##maf version=1 scoring=roast.v3.3 a score=154721.000000 s hg38.chr4_KI270787v1_alt 0 568 + 111943 cagatatttacagaactgtctagccaacaactgcagaatatacattctattcatcatacatggagcattctccaagacagaccatatgacaggccacaaaacaagtcttaataaatttaagaaaatcaaaattatatcaagtactctctcagaccacagtggaatataaaattggaaattaactctgaaaggaaccctgaaaaccatgcaaacacatggaaattaaacaacctgttcctgaatgatcgtcgagtcaaaaggaaatcaagatggaaatttaaatttaaaattctttgaactgaacaatagtaatggcacaatatcaaaacccctgggatacagcaaaggtggtgctaagagggaagttcatagtattaaatgactacatcaaaaggcctgaaagagcacaaatctaaggtcacacctcaaggagctagagaaacaagaacaaagcaaactcaaacccagcagaagaaaagaaataatgaagatcagagcagaactaaatgaaattgaaacaaatgaacaaaaatataaaagacaaatgaagcaaagagctggttttatg s panPan2.chr4 120978570 566 - 195804263 cagatatttacagaactgtctagccaacaactgcagaatatacattctattcatcatacatggagcattctccaagacagaccatatgataggccacaaaacaagtcttaataaatttaagaaaatcaaaattatatcaagtactatctcagaccacagtggaata--aaattggaaattaactctgaaaggaaccctgaaaaccatgcaaacacatggaaattaaacaacctgttcctgaatgatcgtcaagtcaaaaggaaatcaagatggaaatttaaatttaaaattctttgaactgaacaatagtaatgacacaatatcaaaacccctgggatacagcaaaggtggtgctaagagggaagttcatagtattaaatgactacatcaaaaggcctgaaagagcacaaatctaaggtcacacctcaaggagctagagaaacaagaacaaagcaaactcaaacccagcagaagaaaagaaataatgaagatcagagcagaactaaatgaaatagaaacaaacgaacaaaaatataaaagacaaatgaaacaaagagctgattttACG i panPan2.chr4 N 0 C 0 s gorGor5.CYUI01014963v1 4409664 566 - 17550833 cagatatttacagaactgtctagccaacaactgcagaatatatattctattcatcatacatggagcattctccacgacagaccatatgataggccacaaaacaagtcttaataaatttaagaaaatcaaaattatatcaagtactctctcagaccacagtggaata--aaattggaaattaactctgaaaggaaccctgaaaaccatgcaaacacatggaaattaaacaacctgttcctgaatgatcgtcgagtcaaaaggaaatcaagatggaaatttaaatttaaaattctttgaactgaacaatagtaatgacacaatatcaaaacccctgggatacagcaaaggtggtgctaagagggaagttcatagtattaaatgactacatcaaaaggcctgaaagagcacaaatctaaggtcacacctcaaggagctagagaaacaagaacaaagcaaactcaaacccagcagaagaaaagaaataatgaagatcagagcagaactaaatgaaatggaaacaaacaaacaaaaatataaaagacaaatgaaacaaacagctggttttatg i gorGor5.CYUI01014963v1 N 0 C 0 a score=933.000000 s hg38.chr4_KI270787v1_alt 568 3 + 111943 aCc s panPan2.chr4 120979136 3 - 195804263 atc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4410230 3 - 17550833 atc i gorGor5.CYUI01014963v1 C 0 C 0 s macFas5.chr5 110657420 3 - 189454096 att i macFas5.chr5 N 0 C 0 a score=2298128.000000 s hg38.chr4_KI270787v1_alt 571 590 + 111943 atatgatcatctcaatagatgcagaaaaagcatttgacaaaatccagcatcgctttatgattaaaaccttcagcaaaattggcatagaaggaacatatgttaaggtaataaaagccatttatgacaaacccacatccaatattacactgagcaagaaaaaaaatgaaagcatt-cccctgagaattggaagaagacaaggatgtccactttcaccacttctatctaacataatactggaaattctagccagagcaatcagacaagagaaagaaataaagggcatctaaattggtaaaaaggaagtcaaactgtcgctgtttgttgatgatctgactgtatacctagaaaaccctaaagactcatccaaaaagctcctagaactgagaaatgaattcagcaaagtttcagaatacaaattaatatacacaaatcagtagctctcctatacaccaacagcgaccaagttgagaatcaaatcaagaactcaatcacttttacaacagctgcaaaaaaataaaataaaacacttaggaatatacctaaccaatgaggtgaaaggcctctacaaggaaaactacaaaacattactg s panPan2.chr4 120979139 590 - 195804263 atatgatcatctcaatagatgcagaaaaagcatttgacaaaatccagcatcgctttatgattaaaaccttcagcaaaattggcatagaaggaacatatgttaaggtaataaaagccatttatgacaaacccacatccaatattacactgagcaagaaaaaaattgaaagcatt-cccctgagaattggaagaagacaaggatgtccactttcaccacttctatctaacataatactggaaattctagccagagcaatcagacaagagaaagaaataaagggcatctaaactggtaaaaaggaagtcaaactgtcactgtttgttgatgatctgactgtatacctagaaaaccctaaagactcatccaaaaagctcctagaactgagaaatgaattcagcaaagtttcagaatacaaattaatatacacaaatcagtagctctcctatacaccaacagcgaccaagttgagaatcaaatcaagaactcaatcacttttacaacagctgcaaaaaaataaaataaaacacttaggaatatacctaaccaatgaggtgaaaggcctctacaaggaaaactacaaaacattactg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4410233 589 - 17550833 acatgatcatctcaatagatgcagaaaaagcatttgacaaaatccagcatcgctttatgattaaaaccttcagcaaaattggcatagaaggaacttatgttaaggtaataaaagccatttatgacaaacccacatccaatattacactgagcaag-aaaaaattgaaagcatt-cccctgagaactggaagaagacaaggatgtccactttcaccacttctatccaacataatactggaaattctagccagagcaatcagacaagagaaagaaataaagggcatctaaattggtaaaaaggaagtcaaactgtcgctgtttgttgatgatctgactgtatacctagaaaaccctaaagactcatccaaaaagctcctagaactgagaaatgaattcagcaaagtttcagaatacaaattaatatacacaaatcagtagctctcctatacaccaacagcgaccaagctgagaatcaaatcaagaactcagtcacttttacaacagctgcaaaaaaataaaataaaacacttaggaatatacctaaccaatgaggtgaaaggcctctacaaggaaaactacaaaacattactg i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111489309 584 - 190429646 atatgatcatctcaatagatgcagaaaaagcatttgacaatttccagcatccctttatgattaaaaccttcagcaaaattggcaaagaaggagcatatgttaaggtaataaaagtcatttatgacaaacccacatctaatattacactgaacaag-agaaaattgaaagcattccccctgagaactggaaaaagacaaggatgcccactttcaccacttctatccaacatagtactggaaattctagccagagcaatcagacaagagaaagaaataaagggcatctaaatcggtaaaaaggacgtcaaactgtcgctgtttgttgatgatatgactgtatacctagaaaaccctaaagactcatccaaaaagctcctagaactgagaaatgaattcagcaaagtttcagaatacaaattaatgtacacaaatcagtagctctcctatacacaaacagtgaccaagctgagaatcaaatcaagaac-caatcacttttacaacagttgcaaaaaaataaaat-----ccttaggaatatatctaatcaatgaggtgaaaggcctctacaaggaaaactacaaaacattaccg i rheMac8.chr5 N 0 C 0 s macFas5.chr5 110657423 584 - 189454096 atatgatcatctcaatagatgcagaaaaagcatttgacaatttccagcatccctttatgattaaaaccttcagcaaaattggcaaagaaggagcatatgttaaggtaataaaagtcatttatgacaaacccacatctaatattacactgaacaag-agaaaattgaaagcattccccctgagaactggaaaaagacaaggatgcccactttcaccacttctatccaacatagtactggaaattctagccagagcaatcagacaagagaaagaaataaagggcatctaaatcggtaaaaaggacgtcaaactgtcgctgtttgttgatgatatgactgtatacctagaaaaccctacagactcatccaaaaagctcctagaactgagaaatgaattcagcaaagtttcagaatacaaattaatgtacacaaatcagtagctctcctatacacaaacagtgaccaagctgagaatcaaatcaagaac-caatcacttttacaacagttgcaaaaaaataaaat-----ccttaggaatatatctaatcaatgaggtgaaaggcctctacaaggaaaactacaaaacattaccg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13225207 584 + 26754465 atatgatcatctcaatagatgcagaaaaagcatttgacaatttccagcatccctttatgattaaaaccttcagcaaaattggcaaagaaggagcatatgttaaggtaataaaagtcatttatgacaaacccacatccaatattacactgaacaag-agaaaattgaaagcattccccctgagaactggaaaaagacaaggatgcccactttcaccacttctatccaacatagtactggaaattctagccagagcaatcagacaagagaaagaaataaagggcatctaaatcggtaaaaaggacgtcaaactgtcgctgtttgttgatgatatgactgtatacctagaaaaccctaaagactcatccaaaaagcccctagaactgagaaatgaattcagcaaagtttcagaatacaaattaatgtacacaaatcagtagctctcctatacacaaacagtgaccaagctgagaatcaaatcaagaac-caatcacttttacaacagttgcaaaaaaataaaat-----ccttaggaatatacctaatcaatgaggtgaaaggcctctacaaggaaaactacaaaacattaccg i macNem1.NW_012012466v1 N 0 C 0 s cerAty1.NW_012001307v1 4127515 584 - 5137665 atataatcatctcaatagatacagaaaaagcatttgacaatttccagcatccctttatgattaaaaccttcagcaaaattggcaaagaaggagcatatgttaaggtaataaaagtcatttatgacaaacccacatccaattttacactgaacaag-aaaaaattgaaagcattccccctgagaactggaaaaagacaaggatgcccactttcaccacttctatccaacatagtactggaaattctagccagagcaatcagacaagagaaagaaataaaggtcatccaaattggtaaaaaggacgtcaaactgtcgccgtttgttgatgatatgactgtatacctagaaaaccctaaagactcatccaaaaagctcctagaactgagaaatgaattcagcaaagtttcagaatacaaattaatgtacacaaatcagtagctctcctatacacaaacagtgaccaagctgagaatcaaatcaagaac-caatcacttttacaacagttgcaaaaaaataaaat-----ccttaggaatatacctgatcaatgaggtgaaaggcctctacaaggaaaactacaaaacattactg i cerAty1.NW_012001307v1 N 0 C 0 s chlSab2.chr7_KE147969v1_random 34423 584 - 60632 atatgatcatctcaatagatgcagaaaaagcatttgacaatttccagcatccctttatgattaaaaccttcagcaaaattggcaaagaagcagcatatgttaaggaaataaaagtcatttatgagaaacccacatccagtattacactgaacaag-aaaaaattgaaagcattccccctgagaactggaaaaagacaaggatgcccactttcaccacttctatccaacatagtactggaaattctagccagagcaatcagacaagagaaagaaataaagggtatctaaattggtaaaaaggacgtcaaactgtcgctgtttgttgatgatatgactgtatacctagaaaaccctaaagactcatccaaaaagctcctagaactgagaaatgaattcagcaaagtttcagaatacaaattaatgtacacaaatcagtagctctcctatatacaaacagtgaccaagctgagaatcaaatcaagaac-caatcacttttacaacagttgcaaaaaaataaaat-----ccttaggaatatacctgatcagtgaggtgaaaggcctctacaaggaaaactacaaaacattactg i chlSab2.chr7_KE147969v1_random N 0 C 0 s manLeu1.NW_012104388v1 1942729 584 + 2427316 atataatcatctcaatagatgcagaaaaagcatttgacaatttccagcatccctttatgattaaaaccttcagcaaaattggcaaagaaggagcatatgttaaggtaataaaagtcatttatggcaaacccacatccaattttacactgaacaag-aaaaaattgaaagcattccccctgagaactggaaaaagacaaggatgcctactttcaccacttctatccaacatagtactggaaattctagccagagcaatcagacaagagaaagaaataaagggcatccaaattggtaaaaaggacgtcaaactgtcgctgtttgttgatgatatgactgtatacctagaaaaccctaaagactcatccaaaaagctcctagaactgagaaatgaattcagcaaagtttcagaatacaaattaatgtacacaaatcagtacctctcctatacacaaacagtgaccaagctgagaatcaaatcaagaac-caatcacttttacaacagttgcaaaaaaataaaat-----tcttaggaatatacctgatcaatgaggtgaaaggcctctacaaggaaaactacaaaacattactg i manLeu1.NW_012104388v1 N 0 C 0 s colAng1.NW_012119221v1 1226219 584 + 1448899 atatgatcatctcaatagatgcagaaaaagcatttgacaatttccagcatccctttatgattaaaaccttcagccaaattggcaaagaaggagcatctattaaggtaataaaagtcatttatgacaaacccacatccaatattacactgaacaag-aaaaaattgaaagcattcccccggagaaccggaaaaagacaaggatgcccactttcaccacttctatccaacatagtactggaaattctagccagagcaatcagacaagagaaagaaataaaaggcatctaaatcagttaaaaggatgtcaaactgtcgctgtttgttgatgacatgaccatatacctagaaaaccctaaagactcatccaaaaagctcctagaactgagaaatgaattcagcaaagtttcagaatacaaattaatgtacacaaatcagtagctctcctacacacaaacagtgaccaagctgagaatcaaatcaagaac-caatcacttttacaacagttgcaaaaaaataaaat-----acttaggaatatacctaatcaatgaggtgaaaggcctctacaaggaaaactacaaaacattactg i colAng1.NW_012119221v1 N 0 C 0 a score=7022017.000000 s hg38.chr4_KI270787v1_alt 1161 1475 + 111943 aaagaaattatagacaccacaaacaaatggaaatacatcccatgcacatggatgggtagactcaatattgggaaaatgaccatactgccaaaagcaatctaaaattcaatTTGTAGACTGAATTGtaatcaccacaactgcatggtactggtgtaaaaataggcacatagacaaatggaacagaatagagaacccagaaataaagccaaatacttatcaccaactgatcttcgacaaagcaaacaaaaacaaatttatgtttggggaaagaacaccctattcaacaaatggtgctggggtaactggcaagccacgtgtagaagaatgaaactggatcctcatc---------------------actc---------------------aagatgaatcaaagacttaaatctaagaccagaaaccataaacattctagaagataacatcagaaaaacccttttagacgtcggctcaggcaaagactttatgaccaagaacccaaaagcaaatgcaacaaaaacgaagcgctagtttgttgaaaagataaataaaactgatagactattagtgagactaactaagaaaagaagagagaagatccaaataaactcaattagaaatgaaaacggagatattacaaccgataccacagaaatacaaaagatcattcaaagctactatgaacacctttatacgcataaactagaaaacctagaggagattgatacattcctggaaatatacaaccctcctagattaagccaggaagaaacagaaactctgaagagaccaataacaagcagcgagattgaaatagtaataataa------aaaaatgccaacaac--aaaaaagttctggaccagatggaggataactgaattctatcagacattcaaagaagaatgggacttaattaaactaaaaggttctgtacagcaaagaaataatcagcagagtaaacagacaacccacagagtgggagaa---------------------------------aatatccagaatc--tacaaggaactcaaacaaatcaacaagaataaaacaaataatctcatcaaaaag-tgggctaaggatatgaatagacaatctcaaaaaaagaaattcaaatggccaaaaaacat--gaaaaaacaatcaacatcactaatgatcaaggaaatgcaaatcaaaaccacagtgcaatactaccttactgctacaagaatggccatgataaaaaatttaaaaataatagatgttggcatggatgtggtgaaaagggaacacttttacactgctggtgggaatgtaaactagtataactgctatgaaaaacagtgtagagattccttaaagaactaaaaatagaaataccatttgatccagcaacctcattattgggtatctacccagaggaaaagaagtcattatatgaaaaagatattgcacatgcatgtttatagcagcataatttgcaattgcaaaagtatggaaccagcccaaatgcccattaattaacaagtggataaagaaattgtgatatatatatatat-- s panPan2.chr4 120979729 1500 - 195804263 aaagaaattatagacaccacaaacaaatggaaatacatcccatgctcatggatgggtagactcaatattgggaaaatgaccatactgccaaaagcaatctaaaattcaatTTGTAGACTGAATTGtaatcaccaaaactgcatggtactggtgtaaaaataggcacatagacaaatggaacagaatagagaacccagaaataaagccaaatacttatcaccaactgatcttcgacaaagcaaacaaaaacaaatttatgtttggggaaagaacaccctattcaacaaatggtgctggggtaattggcaagccacgtgtagaagaatgaaactggatcctcatctctcaccttatataaaaatcaactc---------------------aagatgaatcaaagacttaaatctaagaccagaaaccataaaaattctagaagataacatcagaaaaacccttttagacgttggcttaggcaaagactttatgaccaagaacccaaaagcaaatgcaacaaaaacaaagtgctagtttgttgaaaagataaataaaactgatagactattagtgagactaactaagaaaagaagagagaagatccaaataaactcaattagaaatgaaaatggagatattacaaccgataccacagaaatacaaaagatcattcaaagctactatgaacacctttatacgcataaactagaaaacctagaggagattgatacattcctggaaatatacaaccctcctagattaagccaggaagaaacagaaactctgaagagaccaataacaagcagcgagattgaaatagtaataataataataaaaaaatgccaacaac--aaaaaagttctggaccagatggaggataactgaattctatcagacattcaaagaagaatgggacttaattaaactaaaaggttctgtacagcaaagaaataatcagcagagtaaacagacaacccacagagtgggagaa---------------------------------aatatccagaatc--tacaaggaactcaaacaaatcaacaagaataaaacaaataatctcatcaaaaag-tgggctaaggatatgaatagacaatctcaaaaaaagaaattcaaatggccaaaaaccat--gaaaaaacaatcaacatcactaatgatcaaggaaatgcaaaccaaaaccacagtgcaatactaccttactgctacaagaatggccatgataaaaaatttaaaaataatagatgttggcatggatgtggtgaaaagggaacacttttacactgctggtgggaatgtaaactagtataactgctatgaaaaacagtgtagagattccttaaagaactaaaaatagaaataccatttgatccagcaacctcattattgggtatctacccagaggaaaagaagtcattatatgaaaaagatattgcacatgcatgtttatagcagcataatttgcaattgcaaaagtatggaaccagcccaaatgcccattaattaacaagtggataaagaaattgtgatatatatatat---- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4410822 1492 - 17550833 aaagaaattatagacaccacaaacaaatggaaatacatcccatgctcatggatgggtagactcaatattgggaaaatgaccatactgccaaaagcaatctaaaattcaatttgtagattgaattgtaatcaccaaaactgcatggtactggtgtaaaaataggcacatagaccaatggaacagaatagagaacccagaaataaagccaaatacttatcaccaactgatcttcgacaaagcaaacaaaaacaaatttatgtttggggaaagaacaccctattcaacaaatggtgctggggtaattggcaagccacgtgtagaagaatgaaactggatcctcatctctcaccttatataaaaatcaactc---------------------aagatgaatcaaagacttaaatctaagaccagaaaccataaaaattctagaagataacatcagaaaaacccttttagacattggcttaggcaaagactttatgaccaagaacccaaaagcaaatgcaacaaaaacaaagcgctagtttgttgaaaagataaataaaactgatagactattagtgag----actaagaaaagaagagagaagatccaaataaactcaattagaaatgaaaacagagatattacaaccgataccacagaaatacaaaagatcattcaaagctactatgaacacctctatacgcataaactagaaaacctagaggagattgatacattcctggaaatatacaaccctcctagattaagccaggaagaaacagaaactctgaagagaccaataacaagcagcgagattgaaatagtaataataataataaaaaaatgccaacaac--aaaaaagttctggaccagatggaggataactgagttctatcagacattcaaagaagaatgggacttaattaaactaaaaggttctgtacagcaaagaaataatcagcagagtaaacagacaacccacagagtgggagaa---------------------------------aatatccagaatc--tacaaggaactcaaacaaat---caagaataaaacaaataatctcatcaaaaag-tgggctaaggatatgaatagacaatctcaaaaaaagaaattcaaatggccaaaaaacat--gagaaaacaatcaacatcactaatgatcaaggaaatgcaaatcaaaaccacagtgcaatactaccttactgctacaagaatggccatgataaaaaaattaaaaataatagatgttggcatggatgtggtgaaaa-ggaacacttttacactgctggtgggaatgtaaactagtataactgctatgaaaaacagtgtggagattccttaaagagctaaaaatagaaataccatttgatccagcaatcccattattgggtatctacccagaggaaaagaagtcattatatgaaaaagatattgcacatgcatgtttatagcagcataatttgcaattgcaaaagtatggaaccagcccaaatgcccattaattaacaagtggataaagaaattgtgatatatatatat---- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69283487 1523 - 118206036 aaagaaatcatagacaccacaaacaaatggaaatacatcccatgctcatggatgggtagactcaatattgtgaaaatgaccatactgccaaaagcaatctaaaattcaatttgtagattgaattgtaatcaccaaaactgcatggtgctggtgtaaaaataggcacatagaccaatggaacagaatagaggacccagaaataaagccaaatacttatcaccaactgatcttcgacaaagcaaacaaaaacata-----aattggggaaagaacaccctattcaacaaatggtgctggggtaattggcaagccacatgtagaagaatgaaactggatcctcatctctcaccttatataaaaatcaactc---------------------aagatgaatcaaagacttaaatctaagaccagaaaccataaaaattctagacgataacatcagaaaaacccttttagacattggcgtaggcaaagactttatgaccaagaacccaaaagcaaatgcaacaaaaactaagcgctggtttgttgaaaagataaataaaactgatagaccattagtgagactaactaagaaaagaagagagaagatccaaatatactcatttagaaatgaaaacggagatattacaaccgataccacagaaatacaaaagatcattcaaagctactatgaacacctttatacgcataaactagaaaacctagaggagattgatacattcctggaaatatacaaccctcctagattaagccaggaagaaacagaaactctgaagagaccaataacaagcagcgagattgaaatagtaataataataataataatatgccaacca---ataaaagttctggaccagatggaggataattgaattctatcagacattcaaagaagaatgagacttaattaaactaaaaggttccgtacagcaaagaaataatcagcagagtaaacagacaacccacagagtgggagaa-atcttcacaatctatatatccaacaaagaactaagatccagaatc--tacaaggaactcaaacaaatcaacaagaataaaacaaataatctcatcaaaaag-tgggctaaggatatgaatagacaatctcaaaaaaagaaattcaaatggccaaaaaacat--gaaaaaataatcaacatcactaatgatcagggaaatacaaatcaaaaccacaatgcaatactaccttactcctgcaagaatggccatgataaaaacatt---aataatagatgttgacatggatgtggtgaaaagggaacacttttacactgctgttgggaatgtaaactagtataactgctatgaaaaacagtgtggagagtccttaaagagctaaaaatagaaataccatttgatccagcaatcccattgttgggtatctacccagaggaaaagaagtcattatatgaaaaaaatattgcacatgcatgtttatagcagcataatttgcaattgcaaaagtatggaaccagcccaaatgcccattaattaacaagtggataaagaaattgtgatatatgtatat---- i nomLeu3.chr9 N 0 C 0 s rheMac8.chr5 111489893 1530 - 190429646 aaagaaatcatagacaacacaaacaaatggaaatacatcccatgctcatgggtgggtagactcaatattgtgaaaatgaccatactgccaaaagcaaactaaaattcaacttgtagattgaattgtagtcatcaaaactgcatggtactggtgtaaaaagaggcacatagaccaatggaacagaatagagaacccagaaataaagccaaatacttatctccacctgatcttcaacaaagcatacaaaaacata-----aattggggaaagaacaccctatgaaataaatgatgctggggtaattggcaagccatgtgtagaagaataaaactggatcctcatctctcaccttatataaaaatcatctc---------------------aagatgaatcaaagacttaactctaagaccagaaaccataaaaattctagaagataacatcagaaaaacccttctagacattggcttaggcaaagactttatgaccaagaatccaaaagcaaatgcatcaaaaacaaagagctagtctgctgaaaat----ataaaattgatagaccattagtgagattaactaagaaaagaagagagaagatccaagtaaactcaattagaaatgaagaggaagatattacaactgataccacagaaatacaaaagatcattcaaagctactatgaacacctttatacacataaactagaaaacctagaggagaatgatacattcctggaaatataaaaccctcctagattaagccaggaagaaacagaaactgtgaagaaaccaataacaagcagcaagattgaaatagtaataataa---taaaaaaatgccaacaacaaaaaaaagttctggaccagatgaaggataactgaattctatcagacattcaaagaagaatgggacttcattaaactaaaagcttctgtacagcaaagaaataatcagcagagtaaacagacaacccacagagtgggagaaaatcttcacaatctatacctccaacaaagaactaatatccagaatctttacaaggacaccaaacaaatcaacaagaataaaataaataatctcattaaaaagttgggctaaggacatgaacagacaatctcaaaaaaagaaattcaaatggccaagaaacattcgaaaaaatgatcaacatcactaatgatcagggaaatgccagtcaaaaccacaatgcaatactaccttactcctgcaagaatggccatgataaaaaaataaaaaataatagatattggcatggatgtggtgaaaagggaacacttttacactgctggtgggaatgtaaactagtataactgctatgaaaaacagtgtggagattccttaaagagctaaaaatagaaataccatttgatctagcaatcccattactgggtatctacccagaggaaaataagttattatatgaaaaagatattgcacacacatgtttatagcagcataatttgcaattgcaaaagtataaaaccagtccaaatgcccattaatcaacaagtggataaagaaattgtggtgtatatatat--at i rheMac8.chr5 C 0 I 44 s macFas5.chr5 110658007 1530 - 189454096 aaagaaatcatagacaacacaaacaaatggaaatacatcccatgctcatgggtgggtagactcaatattgtgaaaatgactatactgccaaaagcaaactaaaattcaaCTTGTAGATTGAATTGtagtcatcaaaactgcatggtactggtgtaaaaagaggcacatagaccaatggaacagaatagagaacccagaaataaagccaaatacttatctccacctgatcttcaacaaagcatacaaaaacata-----aattggggaaagaacaccctatgaaataaatgatgctggggtaattggcaagccatgtgtagaagaataaaactggatcctcatctctcaccttatataaaaatcatctc---------------------aagatgaatcaaagacttaactctaagaccagaaaccataaaaattctagaagataacatcagaaaaacccttctagacattggcttaggcaaagactttatgaccaagaatccaaaagcaaatgcatcaaaaacaaagagctagtctgctgaaaat----ataaaattgatagaccattagtgagattaactaagaaaagaagagagaagatccaagtaaactcaattagaaatgaagaggaagatattacaacagataccacagaaatacaaaagatcattcaaagctactatgaacacctttatacacataaactagaaaacctagaggagaatgatacattcctggaaatataaaaccctcctagattaagccaggaagaaacagaaactgtgaagaaaccaataacaagcagcaagattgaaatagtaataataa---taaaaaaatgccaacaacaaaaaaaagttctggaccagatgaaggataactgaattctatcagacattcaaagaagaatgggacttcattaaactaaaagcttctgtacagcaaagaaataatcagcagagtaaacagacaacccacagagtgggagaaaatcttcacaatctatacctccaacaaagaactaatatccagaatctttacaaggacaccaaacaaatcaacaagaataaaataaataatctcattaaaaagttgggctaaggacatgaacagacaatctcaaaaaaagaaattcaaatggccaagaaacatttgaaaaaatgatcaacatcactaatgatcagggaaatgccagtcaaaaccacaatgcaatactaccttactcctgcaagaatggccatgataaaaaaataaaaaataatagatattggcatggatgtggtgaaaagggaacacttttacactgctggtgggaatgtaaactagtataactgctatgaaaaacagtgtggagattccttaaagagctaaaaatagaaataccatttgatctagcaatcccattactgggtatctacccagaggaaaataagttattatatgaaaaagatattgcacacacatgtttatagcagcataatttgcaattgcaaaagtataaaaccagtccaaatgcccattaatcaacaagtggataaagaaattgtggtgtatatatat--at i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13225791 1528 + 26754465 aaagaaatcatagacaacacaaacaaatggaaatacatcccatgctcatgggtgggtagactcaatattgtgaaaatgaccatactgccaaaagcaaactaaaattcaacttgtagattgaattgtagtcatcaaaactgcatggtactggtgtaaaaagaggcacatagaccaatggaacagaatagagaacccagaaataaagccaaatacttatctccaactgatcttcaacaaagcatacaaaaacata-----aattggggaaagaacaccctatgaaataaatggtgctggggtaattggcaagccatgtgtagaagaataaaactggatcctcatctctcaccttatataaaaatcatctc---------------------aagatgaatcaaagacttaaatctaagaccagaaaccataaaaattctagaagataacatcagaaaaacccttctagacattggcttaggcaaagactttatgaccaagaatccaaaagcaaatgcatcaaaaacaaagagctagtctgctgaaaat----ataaaattgatagaccattagtgagattaactaagaaaagaagagagaagatccaagtaaactcaattagaaatgaagaggaagatattacaactgataccacagaaatacaaaagatcattcaaagctactgtgaacacctttatacacataaactagaaaacctagaggagattgatacattcctggaaatataaaaccctcctagattaagccaggaagaaacagaaactgtgaagaaaccaataacaagcagcaagattgaaatagtaataataa---taaaaaaatgccaacaac--aaaaaagttctggaccagatgaaggataactgaattctatcagacattcaaagaagaatgggacttcattaaactaaaaacttctgtacagcaaagaaataatcagcagagtaaacagacaacccacagagtgggagaaaatcttcacaatctatacctccaacaaagaactaatatccagaatctttacaaggacaccaaacaaatcaacaagaataaaataaataatctcattaaaaagttgggctaaggacatgaacagacaatctcaaaaaaagaaattcaaatggccaagaaacattcgaaaaaatgatcaacatcactaatgatcagggaaatgccagtcaaaaccacaaggcaatactaccttactcctgcaagaatggccatgataaaaaaataaaaaataatagatattggcatggatgtggtgaaaagggaacacttttacactgctggtgggaatgtaaactagtataactgctatgaaaaacagcgtggagattccttaaagagctaaaaatagaaataccatttgatctagcaatcccattactgggtatctacccagaggaaaataagttattatatgaaaaagatattgcacacacatgtttatagcagcataatttgcaattgcaaaagtataaaaccagtccaaatgcccattaatcaacaagtggataaagaaattgtggtgtatatatat--at i macNem1.NW_012012466v1 C 0 I 44 s cerAty1.NW_012001307v1 4128099 1509 - 5137665 aaagaaatcatagataacataaacaaatggaaatacatcccatgctcatgcatgggtaggctcaatattgtgaaaatgaccatactgccaaaagcaaactaaaattcaatttgtagattg-------------aaaactgcatggtactggtgtaaaaataggcacatagaccaatggaacagaatagagaacccagaaataaagccaaatacttatcaccaactgatcttcaacaaagcatacaaaaacata-----aattggggaaagaacaccctgtgaaataaatggtgctggggtaattggcaagccacgtgtagaagaataaaactggatcctcatctctcaccttatataaaaatcatctc---------------------aagatgaatcaaagacttaaatctaagaccagaaaccataaaaattctagaagataacatcagaaaaacccttctagacattggcttaggcaaagactttatgaccaagaatccaaaagcaaatgcatcaaaaacaaagagctggtttgctgaaaat----ataaaattgatagaccattagtgagattaactaagaaaagaagagagaagatccaaataaactcaattagaaatgaagaggaagatattacaactgataccacagaaatacaaaagatcattcaaagctactatgaacacctttatacgcataaactagaaaacctagaggagattgatacattcctggaaatataaaaccctcctagattaagccaggaagaaacagaaactgtgaagagaccaataacaagcagcaagattgaaatagtaataataa---tttaaaaatgccaacaac--aaaaaagttctagaccagatgaaggataactgaattctatcagacattcaaagaagaatgggacttcattaaactaaaagcttctgtacagcaaagaagtaatcagcagagtaaacagacaacccacagagtgggagaaaatcttcacaatctatacctccaacaaagaactaatatccagaatc--tacaaggacaccaaacaaatcaacaagaataaaataaataatctcattaaaaagttgggctaaggacatga----acaatctcaaaaaaagaaatttaaatggccaagaaacattcgaaaaaatgatcaacatcactaatgatcagggaaatgccagtcaaaaccacaatgcaataccaccttactcctgcaagaatggccatgataaaaaaataaaaaataatagatattggcatggatgtggtgaaaagggaacacttttacactgctggtgggaatgtaaactagtataactgctatgaaaaacagtgtggagattccttaaagagctaaaaatagaaataccatttgatctagcaatcccattactgggtatctacccagaggaaaataagtcattatatgaaaaagatattgcacacacatgtttatagcagcataatttgcaattgcaaaagtatagaaccagtccaaatgcccattaatcaacaagtggataaagaaattgtggtgtgtatatat--at i cerAty1.NW_012001307v1 C 0 I 28 s chlSab2.chr7_KE147969v1_random 35007 1526 - 60632 aaagaaatcatagacaacataaacaaatggaaatacatcccatgctcatggatgggtagactcaatattgtgaaaatgatcatactgccaacagcaaattaaaattcaatTTGTAGATTGAATTGtagtcatcaaaactgcatggtactggtgtaaaaacaggcacatagaccaatggaacagaatagagaacccagaaataaagccaaatacttatcaccaactgatcttcaacaaagcatacaaaaacata-----aattggggaaagaacaccctatgaaataaatggtgctggggtaattggcaagccatgtgtagaagaataaaactggatcctcatctctcaccttatataaaaatcatctc---------------------aagatgaatcaaagacttaaatctaagaccagaaaccataaaaattctagaagataacatcagaaaaacccttctagacattggcttaggcaaagactttatgaccaagaatccaaaagcaaatacatcaaaaacaaagagctggtttgctgaaaat----ataaaattgatagaccattagtgagattaactaagaaaagaagagagaagatccaaataaactcaattagaaatgaagaggaagatattacaactgataccacagaaatacaaaagatcattcaaagctactatgaacacctttatacgcataaactagaaaacctagaggagattgatacattcctggaaatataaaaccctcctagattaagccaggaagaaacagaaactgtgaagagaccaataacaagcagcaagattgaaatagtaataataa---taaaaaaatgccaacaac--aaaaaagttctggaccagatgaaggataactgaattctatcagacattcaaggaagaatgggactccattaaactaaaagcttctgtacagcaaagaaataatcagcagagtaaacagacaacccacagagtgggagaaaatcttcacaatctatacctccaacaaagaactaatatccagaatc--tacaaggacaccaaacaaatcaacaagaataaaataaataatctcattaaaaagttgggctaaggacatgaacagacaatctcaaaaaaagaaattcaaatggccaagaaacattcgaaaaaatgatcaacatcactaatgatcagggaaatgccagtcaaaaccacaatgcaatactaccttactcctgcaagaatggccatgataaaaaaataaaaaataatagatattggcatggatttggtgaaaagggaacacttttacactgctggtggcaacgtaaactagtataactgctatgaaaaacagtgtggagattccttaaagagctaaaaatagaaataccatttgatctagcaatttcattactgggtatctacccagaggaaaataagtcattatatgaaaaagatattgcacacacatgtttatagcagcataatttgcaattgcaaaagtatagaaccagtccaaatgcccattaatcaacaagtggataaagaaattgtgatatatatatat--at i chlSab2.chr7_KE147969v1_random C 0 I 12 s manLeu1.NW_012104388v1 1943313 1526 + 2427316 aaataaatcatagacaacataaacaaatggaaatacatcccacgctcatggatgggtaggctcaatattgtgaaaatgaccatactgccaaaagcaaactaaaattcaatttgtagattgaattttagtcatcaaaactgcatggtactggtgtaaaaataggcacatagaccaatggaacagaatagagaacccagaaataaagccaaatacttatcaccaactgatcttcaacaaagcatacaaaaacata-----aattggggaaagaacaccctatgaaataaatggtgctggggtaattggcaagccatgtgtagaagaataaaactggatcctcatctctcaccttatataaaaatcatctc---------------------aagatgaatcaaagacttaaatctaagaccagaaaccataaaaattctagaagataacatcagaaaaacccttctagacattggcttaggcaaagactttatgaccaagaatccaaaagcaaatgcatcaaaaacaaagagctggtttgctgaaaat----ataaaattgatagaccattagtgagattaactaagaaaagaagagagaagatccaaataaactcaattagaaatgaagaggaagatattacaactgataccacagaaatacaaaagatcattcaaagctactatgaacacctttatatgcataaactagaaaacctagaggagattgatacattcctggaaatataaaaccctcctagattaagccaggaagaaacagaaactgtgaagagaccaataacaagcagcaagattgaaatagtaataataa---tttaaaaatgccaacaac--aaaaaagttctagaccagatgaaggataactgaattctatcagacattcaaagaagaatgggacttcattaaactaaaagcttctgtacagcaaagaaataatcagcagagtaaacagacaacccacagagtgggagaaaatcttcacaatctatacctccaacaaagaactaatatccagaatc--tacaaggacaccaaacaaatcaacaagaataaaataaataatctcattaaaaagttgggctaaggacatgaacagacaatctcaaaaaaagaaatttaaatggccaagaaacattcgaaaaaatgatcaacatcactaatgatcagggaaatgccagtcaaaaccacaatgcaataccaccttactcctgcaagaatggccatgataaaaaaataaaaaataatagatattggcatggatgtggtgaaaagggaacactgttacactgctggtgggaatgtaaactagtataactgctatgaaaaacagtgtggagattccttaaagagctaaaaatagaaataccatttgatctagcaatcccattactgggtatctacccagaggaaaataagtcattatatgaaaaagatattgcacacacatgtttatagcagcataatttgcaattgcaaaagtatagaaccagtccaaatgcccattaatcaacaagtggataaagaaattgtggtgtgtgtgtat--at i manLeu1.NW_012104388v1 C 0 I 30 s colAng1.NW_012119221v1 1226803 1547 + 1448899 aaagaaatcacagacaacacaaacaaatggaaatacatcccatgctcatggatgggtagactcaatattgtgaaaatgaccatactgccaaaagcaaactgaaattcaatttgtagattgaattgtagtcatcaaaactgcatggtactggtgtacaaataggcacatagacccatggaacagaatagagaacccagaaataaagccaaatacttatcaccaactgatcttcaacaaagcatacaaaaacata-----aattggggaaagaacaccctatgaaataaatggtgctggcgtaattggcaagccatgtgtagaagaataaaactggatcctcatctctcaccttatataaaaatcatctcaaaaaaaaatcaatcaaaaaaaagatgaatcaaagacttaaatctaagaccagaaaccataaaaattctagaagataacatcagaaaaatccttctggacattggcttaggcaaagactttatgaccaagaatccaaaagcaaatgcaacaaaaacaaagagctggtttgttgaaaat----ataaaattgatagaccattagtgagattaactaaaaaaagaagagagaagatccaaataaactcaattagaaatgaagaggaagatattacaactgataccacagaaatacaaaagatcattcaaagctactatgaacacctttatacgcataaactagaaaacttagaggagattgatacattcctggaaatataaaaccctcctagattaagccaggaagaaacagaaactgtgaagagaccaataacaagcagcaagattgaaatagtaataataa---taataaaatgccaacaat--aaaaaagttctggaccagatgaaagataactgaattctatcagacattcaaagaagaatgggacttcattaaactaaaatcttctgtacagcaaataaataatcagcagagtaaacagacaacccaaagagtgggagaaaattttcacaatctatacatccaacaaagaactagtatccagaatc--tacaaggaaatcaaacaaatcaaccagaacgaaataaataatctcattaaaaagttgtgctaaggacatgaacagacaatctcaaaaaaagaaattcaaatggccaagaaacattcgaataaatgatcaacatcgctaatgatcagggaaatgccagtcaaaactacaatgcaatactaccttactcctgcaagaatggccatgatagaaaaataaaaaataatagatgttggcatggatgtggtgaaaaggaaacacttttacactgctggtgggaatgtaaattagtgtaactgctatgaaaaacagtgtggagattccttaaagagctaaaaatagaaataccgtttgatctagcaatcccattactgggtatctacccagaggaaaataagtcattatatgaaaaagatactgcacacacatgtttatagcagcataatttgcaattgcaaaagtatagaaccagtccaaatgcccattaatcaacaaatggataaataaattgtggtatatatatat--at i colAng1.NW_012119221v1 C 0 C 0 a score=46689.000000 s hg38.chr4_KI270787v1_alt 2636 25 + 111943 gtataccatggattaat----ggccttca s panPan2.chr4 120981229 25 - 195804263 gtataccatggagtaat----ggccttca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4412314 25 - 17550833 gtataccatggagtaat----ggccttca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69285010 23 - 118206036 --ataccatggagtaat----ggccttca i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110659537 27 - 189454096 --atgccgtggaatactactcagccataa i macFas5.chr5 C 0 I 17 s cerAty1.NW_012001307v1 4129636 29 - 5137665 acacgccatggaatactactcagccataa i cerAty1.NW_012001307v1 I 28 I 24 s chlSab2.chr7_KE147969v1_random 36545 29 - 60632 atgcgccatggaatactactcagccataa i chlSab2.chr7_KE147969v1_random I 12 I 24 s manLeu1.NW_012104388v1 1944869 29 + 2427316 acacgccatggaatactactcagccataa i manLeu1.NW_012104388v1 I 30 I 24 s colAng1.NW_012119221v1 1228350 29 + 1448899 atatgccatggaatactactcagccataa i colAng1.NW_012119221v1 C 0 I 24 e macNem1.NW_012012466v1 13227319 44 + 26754465 I e rheMac8.chr5 111491423 44 - 190429646 I a score=831550.000000 s hg38.chr4_KI270787v1_alt 2661 169 + 111943 cagcaacctggatgggtttggagaccattattctaagtgaaataactcaggaatggaaaaccaaacattgtatgttctcactcataagtgggacctaagctatgaggacacaaaggcataagaacgatacaatgaacctgggggaaagggtgggaggaaggtgagggat s panPan2.chr4 120981254 169 - 195804263 cagcaacctggatgggtttggagaccattattctaagtgaaataactcaggaatggaaaaccaaacattgtatgttctcactcataagtgggagctaagctatgaggacacaaaggcataagaatgatacaatgaacctgggggaaagggtgggaggaaggtgagggat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4412339 169 - 17550833 cagcaacctggatgggtttggagaccattattctaagtgaaataactcaggaatggaaaaccaaacattgtatgttctcactcataagtgggagctaagctatgaggacacaaaggcataagaatgatacaatgaacctgggggaaagggtgggaggaaggtgagggat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69285033 169 - 118206036 cagcaacctggatgggtttggagaccattattctaagtgaaataactcaggaatggaagatcaaacattgtatgttctcactcttaagtgggagctaagctatgaggacacaaaggcataagaatgatacaatgaccctgggggaaagggtgggagggaggtcagggat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111491467 169 - 190429646 cagcaacctggatggatttggagaccattattctcagtgaaataactcaggaatggaaaaccaaatactgtatgttctcactcataagtgggagctaagctatgaggacacaaaggcataagaatgatacaatgaacctgggggaaagcgtgggaggaaggtgagggat i rheMac8.chr5 I 44 C 0 s macFas5.chr5 110659581 169 - 189454096 cagcaacctggatggatttggagaccattattctcagtgaaataactcaggaatggaaaaccaaatactgtatgttctcactcataagtgggagctaagctatgaggacacaaaggcataagaatgatacaatgaacctgggggaaagcgtgggaggaaggtgagggat i macFas5.chr5 I 17 C 0 s macNem1.NW_012012466v1 13227363 169 + 26754465 cagcaacctggatggatttggagaccattattctcagtgaaataactcaggaatggaaaaccaaatactgtatgttctcactcataagtgggagctaagctatgaggacacaaaggcataagaatgatacaatgaacctgggggaaagcgtgggaggaaggtgagggat i macNem1.NW_012012466v1 I 44 C 0 s cerAty1.NW_012001307v1 4129689 169 - 5137665 cggcaacctggatgggtttggagaccattattctcagtgaaataactcaggaatggaaaaccaaatactgtacgttctcactcataagtgggagctaagctatgagtacacaaaggcataagaatgatacagtgaacctgggggaaagcatgggaggaaggtgagggat i cerAty1.NW_012001307v1 I 24 C 0 s chlSab2.chr7_KE147969v1_random 36598 169 - 60632 cagcaacctggatgggtttggagaccattattctcagtgaaataactcaggaatggaaaaccaaatactgtatgttctcactcataagtgggagctaagctatgaggacacaaaggcataagaatgatacaatgaacctgggggaaagcgtgggaggaaggtgagggat i chlSab2.chr7_KE147969v1_random I 24 C 0 s manLeu1.NW_012104388v1 1944922 169 + 2427316 cagcaacctggatgggtttggagaccattattctcagtgaaataactcaggaatggaaaaccaaatactgtatgttctcactcataagtgggagttaagctatgagtacacaaaggcataagaatgatacagtgaacctgggggaaagcatgggaggaagatgagggat i manLeu1.NW_012104388v1 I 24 C 0 s colAng1.NW_012119221v1 1228403 169 + 1448899 cagcaacctgggtgggtttggagaccattattctaagtgaaataactcaggaatggaaaaccaaatactgtatgttctcactcataagtgggagctaagctatgaggacacaaaggcataagaatgatacaatgaacctgggggaaagcgtgggaggaaggtgagggat i colAng1.NW_012119221v1 I 24 C 0 a score=1565456.000000 s hg38.chr4_KI270787v1_alt 2830 273 + 111943 aaaagactacacactgggtacagtgtacagtgctggggtgatgggcgcaccaaacttcagaaatcaccactaaataacttatttttgtaactaaacaccacctgttccccaaaaacctattg-----aaataaataaaATGAAGTATGAAAAAAT-------AATTAATAATAAACAAACA----CATACATGCATCCCAGTGGTTCTGTATCTCTGGGGAACCCTGACCAATACAAAgggcatgatgtatgcaacctactctcaaatgtttctaagaaaattttacat s panTro5.chr4 119565140 277 - 194502333 aaaagactacacactgggtacagtgtacagtgctggggtgatgggcgcaccaaacttcagaaatcaccactaaataacttatttttgtaactaaacaccacctgttccccaaaaacctattg-----aaataaataaaATGAAGTATGAAAGAAT-------AATTAATAATAAACAAACAAATACGtacatgcatcccagtggttctgtatctctggggaaccctgaccaatacaAAgggcatgatgtatgcaacctactctcaaatgtttctaagaaaattttacat i panTro5.chr4 N 0 C 0 s panPan2.chr4 120981423 277 - 195804263 aaaagactacacactgggtacagtgtacagtgctggggtgatgggcgcaccaaacttcagaaatcaccactaaataacttatttttgtaactaaacaccacctgttccccaaaaacctattg-----aaataaataaaATGAAGTATGAAAGAAT-------AATTAATAATAAACAAACAAATACGtacatgcatcccagtggttctgtatctctggggaaccctgaccaatacaAAgggcatgatgtatgcaacctactctcaaatgtttctaagaaaattttacat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4412508 277 - 17550833 aaaagactacacactgggtacagtgtacagtgctggggtgatgggcgcaccaaacttcagaaatcaccactaaataacttatttttgtaactaaacaccacctgttccccaaaaacctattg-----aaataaataaaATGAAGTATGAAAAAAT-------AATTAATAATAAACAAACAAATACATACATGCATCCCAGTGGTTCTGTATCTCTGGGGAACCCTGACCAATACAAAgggcatgatgtatgcaacctactctcaaatgtttctaagaaaattttacat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69285202 269 - 118206036 aaaagactacacactgggtacagtgtacagtgctggggtaatggatgcaccaaacttcagaaatcaccactaaataacttatttttgtaactgaacaccacctgttccccaaaaacctattg-----aaataaataaaATGAAGTATGAAAAAAT-------AATTAATAATAAACAAa--------tacatgcatcccagtggttctgtctctctggggaaccctgaccaatacaaagggcatgatgtatgcaacctactctcaaatgtttccaagaaaattttacat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111491636 289 - 190429646 aaaagactacacattgggtacagtgtacactgctgaggtgatggatgcaccaaacttcagaaatcaccattaaataacttatttttgtagctaaacaccccctgttccccaaaaacctattgaaataaaaTAaataaaatgaagcatgaaaaaataattaataattaataataaACAAACAGAtacatacatgtatcccagtggttctgtctctctggagaaccctgaccaatacaaggggcatgatgtatgcagcctactctcaaatgtttctaagaaaattttacat i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110659750 289 - 189454096 aaaagactacacattgggtacagtgtacactgctgaggtgatggatgcaccaaacttcataaatcaccattaaataacttatttttgtagctaaacaccccctgttccccaaaaacctattgaaataaaaTAaataaaatgaagcatgaaaaaataattaataattaataataaACAAACAGAtacatacatgtatcccagtggttctgtctctctggagaaccctgaccaatacaaggggcatgatgtatgcagcctactctcaaatgtttctaagaaaattttacat i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13227532 289 + 26754465 aaaagactacacattgggtacagtgtacactgctgaggtgatggatgcaccaaacttcagaaatcaccattaaataacttatttttgtagctaaacaccccctgttccccaaaaacctattgaaataaaaTAaataaaatgaagcatgaaaaaataaataataattaataataaacaaaCAGAtacatacatgtatcccagtggttctgtctctctggagaaccctgaccaatacaaggggcatgatgtatgcagcctactctcaaatgtttctaagaaaattttacat i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4129858 289 - 5137665 aaaagactacacgctgggtacagtgtacactgctggggtgatggatgcaccaaacttcagaaatcaccattaaataacctatttttgtaactaaacaccacctgttccccaaaaacctattgaaataaaataaATAAAATGAAGCATGAAAAAATAATTAACAATTAATAATAAACAAACAGattcatacatgtatcccactggttctgtctctctggagaaccctgaccaatacaaggggcatgatgtatgcagcctactctcaaatgtttctaagaaaattttacat i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 36767 288 - 60632 aaaagactacacgctgggtacagtgtacactgctggggtgatggatgcaccaaacttcagaaatcacca-taaataacttatttttgtaactaaacaccacctgttccccaaaaacctattgaaataaaaTAAATAAAATGAAGCATGAAAAAATAATTAACAATTAATAATAAACAAACAGattcatacatgtatcccagtggttctgtctctctggagaaccctgaccaatacaaggggcatgatgtatgcagcctactctcaaatgtttctaagaaaattttacat i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1945091 289 + 2427316 aaaagactacacactgggtacagtgtacactgctggggtgatggatgcaccaaacttcagaaatcaccattaaataacttatttttgtaactaaacaccacctgttccccaaaaacctattgaaataaaaTAAATAAAATGAAGCATGAAAAAATAATTAACAATTAATAATAAACAAACAGattcatacatgtatcccagtggttctgtctctctggagaaccctgaccaatacaaggggcatgatgtatgcagcctactctcaaatgtttctaagaaaattttacat i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1228572 285 + 1448899 aaaagaccacacactgggtacagtgtacactgctggggtgatggatgcaccaaacttcagaaatcaccattaaataacttatttttgtaactaaacaccacctgttccccaaaaacctattgaaataaaaTAAATAAAATGAAGCATGAAAAAATAATTAACAATTAATAATAAACAA----AtacatacatgtatcccagcggttctgtctctctggagaaccctgaccaatacaAGGGGAATGATATATGCAGCCTACTTTCAAATGTTTCTAAGAAAATTTTACAT i colAng1.NW_012119221v1 C 0 C 0 a score=2653719.000000 s hg38.chr4_KI270787v1_alt 3103 427 + 111943 taaaaat--atgtggcaaaatgttaaaaa-tggtgaatctggttaaagg--tctat-gaagttgtttatactattactgtaactcttctatatgttttaagttatttcagaataaaaagttggacatttaaaGTGGTAGGCCATTTATGT-TTCAGCTAACAAAATTCTAGTCAGGGGAAGACCCTGACTGGCATTTTTCATAATAGGCCAGGATTTTtcttgttttgggttctgctgaaatgagaacctaaatcaagctttaggtttaggcaagttattgggggta-----------gggggggtgcatctcaggaagcagaaatgagagaat--ggaaga-gtca---aacagggaagaagca--ttatcagttgagctctcactgtaggtacctgtgactcagtcctgctggagacctgtggtagccaggctccaggatggccccaatga--- s panTro5.chr4 119565417 427 - 194502333 taaaaat--atgtggcaaaatgttaaaaa-tggtgaatctgggtaaagg--tatat-gaagttgtttatactattactgtaactcttctatatgttttaagttatttcagaataaaaagttggacatttaaaGTGGTAGGCCATTTATGT-TTCAGCTAACAAAATTCTAGTCAGGGGAAGACCCTGACTGGCATTTTTCATAATAGGCCAGGATTTTtcttgttttgggttctgctgaaatgagaacctaaatcaagctttaggtttaggcaagttattgggggta-----------gggggggtgtatctcaggaagcagaaatgagagaat--ggaaga-gtca---aacagggaagaagca--ttatcagttgagctctcactgtaggtacctgtgactcattcctgctggagacctgtggtagccaggctccaggatggccccaatga--- i panTro5.chr4 C 0 C 0 s panPan2.chr4 120981700 427 - 195804263 taaaaat--atgtggcaaaatgttaaaaa-tggtgaatctgggtaaagg--tatat-gaagttgtttatactattactgtaactcttctatatgttttaagttatttcagaataaaaagttggacatttaaaGTGGTAGGCCATTTATGT-TTCAGCTAACAAAATTCTAGTCAGGGGAAGACCCTGACTGGCATTTTTCATAATAGGCCAGGATTTTtcttgttttgggttctgctgaaatgagaacctaaatcaagctttaggtttaggcaagttattgggggta-----------gggggggtgtatctcaggaagcagaaatgagagaat--ggaaga-gtca---aacagggaagaagCA--TTATCAGTTGAGCTCTCACTGTAGGTACCTGTGACTCATTCCTGCTGGAGACCtgtggtagccaggctccaggatggccccaatga--- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4412785 423 - 17550833 taaaaat--atgtggcaaaatgttaaaaa-tggtgaatctgggtaaaggtatatat-gaagttgtttatactattactgtaactcttctatatgtt-----ttatttcagaataaaaagttggacatttaaaGTGGTAGGCCATTTATGT-TTCAGCTAACAAAATTCTAGTCAGGGGAAGACCCTGACTGGCATTTTTCATAATAGGCCAGGATTTTtcttgttttgggttctgctgaaatgagaacctaaatcaagctttaggtttaggcaagttattgggggta------------ggggggtgtatctcaggaagcagaaattagagaat--ggaaga-gtca---aacagggaagaagCA--TTATCAGTTGAGCTCTCACTGTAGGTACCTGTGACTCAGTCCTGCTGGAGACCtgtggtagccaggctccaggatggccccaatga--- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69285471 427 - 118206036 taaaaat--atgtggcaaaatgttaaaaa-tgctgaatctgggtaaagg--tatat-gaagttgtttatactattactgtaactcttctataagttttaagttatttcagaataaaaagttgaacatttaaaGTGGTAGGCCATTTATGT-TTCAGCCAACAAAATTCTAGTCAGAGGAAGACCCTGACTGGCATTTTTCATAATAGGCCAGGAATTTtcttgttttgggttctgctgaaatgagaacctaaatcaagctttaggtttaggcaagttattgggggta-----------gggggggtgtatctcaggaagcagaaatgagagaat--ggaaga-gtca---aacagggaagaagCA--TTATCAGTTGAGCTCTCACTGTAGGTACCTGTGACTCAGTCCTGCTGGAGACCtgtggtagccaggctccaggatggccccaatga--- i nomLeu3.chr9 C 0 I 3356 s rheMac8.chr5 111491925 424 - 190429646 taaaaat--atgtggcacaatgttaaaaa-tggtgactctgggtaaagg--tatat-gaagttctctatactattactgtaactcttctgtgtgttttaagttatttcaaaataaaaa-TTGCACATTTAAAGTGGTAGGCCATTTATGT-TTCAGCTAACAAAATTCTAGTCAGGGGAAGACCCTGACTAGCTTTTTTCATAATAGGCCAGGATTTTtcttgttttgggttctgctgaaatgagaacctaaatcaagc-ttaggtttaggcaagttattgggggta------------ggagggtgtatctcaggaagcagaaatgagagaat--ggaaga-gtca---aacagggaagaagca--ttatcagttgagctctcactgtaggtacctgtgactcagtcctgctggagacctgtggtagccagtctccaggatggccccaatga--- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110660039 424 - 189454096 taaaaat--atgtggcacaatgttaaaaa-tggtgactctgggtaaagg--tatat-gaagttctctatactattactgtaactcttctgtgtgttttaagttatttcaaaataaaaa-TTGCACATTTAAAGTGGTAGGCCATTTATGT-TTCAGCTAACAAAATTCTAGTCAGGGGAAGACCCTGACTAGCTTTTTTCATAATAGGCCAGGATTTTtcttgttttgggttctgctgaaatgagaacctaaatcaagc-ttaggtttaggcaagttattgggggta------------ggagggtgtatctcaggaagcagaaatgagagaat--ggaaga-gtca---aacagggaagaagca--ttatcagttgagctctcactgtaggtacctgtgactcagtcctgctggagacctgtggtagccagtctccaggatggccccaatga--- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13227821 424 + 26754465 taaaaat--atgtggcacaatgttaaaaa-tggtgactctgggtaaagg--tatat-gaagttctctatactattactgtaactcttctgtgtgttttaagttatttcaaaataaaaa-TTGAACATTTAAAGTGGTAGGCCATTTATGT-TTCAGCTAACAAAATTCTAGTCAGGGGAAGACCCTGACTAGCTTTTTTCATAATAGGCCAGGATTTTtcttgttttgggttctgctgaaatgagaacctaaatcaagc-ttaggtttaggcaagttattgggggta------------ggagggtgtatctcaggaagcagaaatgagagaat--ggaaga-gtca---aacagggaagaagca--ttatcagttgagctctcactgtaggtacctgtgactcagtcctgctggagacctgtggtagccagtctccaggatggccccaatga--- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4130147 425 - 5137665 taaaaat--atgtggcacaatgttaaaaa-tggtgactctgggtaaagg--tatat-gaagttctctatactattactgtaactcttctatgtgttttaagttatttcaaaataaaaagttgaacatttaaaGTGGTAGGCCATTTATGT-TTCAGCTAACAAAATTCTAGTCAGGGGAAGACCCTGACTAGCATGTTTCATAATAGGCCAGGATTTTtcttgttttgggttctgctgaaatgagaacctaaatcaagc-ttaggtttaggcaagttattgggggta------------ggagggtgtatctcaggaagcagaaatgagagaat--ggaaga-gtca---aacagggaagaagca--ttatcagttgagctctcactgtaggtacctgtgactcagtcctgctggagacctgtggtagccagtctccaggatggccccaatga--- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 37055 425 - 60632 taaaaat--atgtggcacaatgttaaaat-tggtgactctgggtaaagg--tatat-gaagttctctatactattactgtaactcttctatgtgttttaagttatttcaaaataaaaagttgaacatttaaaGTGGTAGGCCATTTATGT-TTCAGCTAACAAAATTCTAGTCAGGGGAAGACCCTGACTAGCATTTTTCATAATAGGCCAGGATTTTtcttgttttgggttctgctgaaatgagaacctaaatcaagc-ttaggtttaggcaagttattgggcata------------ggagggtgtatctcaggaagcagaaatgagagaat--ggaaga-gtca---aacagggaagaagca--ttatcagttgagctctcactgtaggtacctgtgactcagtcctgctggagacctgtggtagccagtctccaggatggccccaatga--- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1945380 425 + 2427316 taaaaat--atgtggcacaatgttaaaaa-tggtgactctgggtaaagg--tgtat-gaagttctctatactattactgtaactcttctatgtgttttaagttatttcaaaatgaaaagttgaacatttaaaGTGGTAGGCCATTTATGT-TTCAGCTAACAAAATTCTAGTCAGGGGAAGACCCTGACTAGCATTTTTCATAATAGGCCAGGATTTTtcttgttttgggttctgctgaaatgagaacctaaatcaagc-ttaggtttaggcaagttattgggggta------------ggagggtgtatctcaggaagcagaaatgagagaat--ggaaga-gtca---aacagggaagaagca--ttatcagttgagctctcactgtaggtacctgtgactcagtcctgctggagacctgtggtagccagtctccaggatggccccaatga--- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1228857 425 + 1448899 TAAAAAT--acgtggtacaatgttaaaaa-tggtgactctgggtaaagg--tatat-gaagttctctatactattactgtaactcttctatgtgttttaagttatttcaaaataaaaagttgaacatttaaaGTGGTATGCCATTTATGT-TTCAGCTAACAAAATTCTAGTCAGGGGAAGACCTTGACTAGCATTTTTCATAATAGGCCAGGATTTTtcttgttttgggttctgctgaaatgagaacctaaatcaagc-ttaggtttaggcaagttattgggggta------------ggagggtgtatctcaggaagcagaaatgagagaat--ggaaaa-gtca---aacagggaagaagca--ttatcagttgagctctcactgtaggtacctgtgactcagtcctgctggagacctgtggtagccagtctccaggatggccccaatga--- i colAng1.NW_012119221v1 C 0 C 0 s canFam3.chr13 47941987 426 + 63241923 taaaagtaaatgtggcaaaacattaaaaactggtgaatctggatgaata--tatatgggggctcattatactattattgcaactt-----gatgttttatattattttcaaataaaaaGTTAAAAACGTGAAGTG--AGGCCATTTTTTTGGTAAACTAACAAAATTCAA------GGAAGACCTTAACTGACATTTTGCAT-ATGAGCCAAGATTTCtcttatttggggttgctctgaaatgagaatctaagtcagac-ttcggtttaggtcagttttcgggagggttttcattggagtgaaggtg-atctcaggaagcagaagggagggaatgaggaggatgtcatggaaaaagaaaaagacaacctagcaat---gccttatctattg--actt----ctcagtcctgctgg-gacccgtggtagccagcctccaagatggcccc--tgacaa i canFam3.chr13 N 0 C 0 a score=817758.000000 s hg38.chr4_KI270787v1_alt 3530 155 + 111943 gcccggcctccgtacagtcatacctttgtgtagtgcctgttcactctgtaccagggttggtgtgtctgaccaatgtcacatagcagaagtgatggtaggtcacttacaagattaggtcat-aaaaaagaccatggctttcattttgggcactggcc--------------------- s panTro5.chr4 119565844 155 - 194502333 gccctgcctccgtacagtcatacctttgtgtagtgcctgttcactctgtaccagggttggtgtgtctgaccaatgtcacatagcagaagtgatggtaggtcacttacaagattaggtcat-aaaaaagaccatggctttcattttgggcactggcc--------------------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 120982127 155 - 195804263 gccctgcctccgtacagtcatacctttgtgtagtgcctgttcactctgtaccagggttggtgtgtctgaccaatgtcacatagcagaagtgatggtaggtcacttacaagattaggtcat-aaaaaagaccatggctttcattttgggcactggcc--------------------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4413208 155 - 17550833 gccctgcctccatacagtcatacctttgtgtagtgcctgttcactctgtaccagggttggtgtgtctgaccaatgtcacatagcagaagtgatggtaggtcacttacaagattaggtcat-aaaaaagaccatggctttcattttgggcactggcc--------------------- i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111492349 155 - 190429646 accctgcctccatgtagtcatacctttgtgtaatgcccgttcacactgtactagggttggtgtgtctgaccaatggcacatagcagaagtgatggtaggtcacttacaagattaggtcat-aaaaaagaccatggcttttattttgggcactggct--------------------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110660463 155 - 189454096 accctgcctccatgtagtcatacctttgtgtaatgcccgttcacactgtactagggttggtgtgtctgaccaatggcacatagcagaagtgatggtaggtcacttacaagattaggtcat-aaaaaagaccatggcttttattttgggcactggct--------------------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13228245 155 + 26754465 accctgcctccatgtagtcatacctttgtgtaatgcccgttcacactgtactagggttggtgtgtctgaccaatggcacatagcagaagtgatggtaggtcacttacaagattaggtcat-aaaaaggaccatggcttttattttgggcactggct--------------------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4130572 155 - 5137665 accctgcctccatgtagtcatacctttgtgtaatgcctgttcacactgtactagggttggtgtgtctgaccaatggcacacagcagaagtgatggtaggtcacttacaagattacgtcat-aaaaaagaccatggcttttattttgggcactggct--------------------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 37480 155 - 60632 accctgcctccatgtagtcatacctttgtgtaatgcccgttcacactgtactagggttggtgtgtctgaccaatggcacacagcagaagtgatggtaggtcacttacaagattaggtcat-aaaaaagaccatggcttttattttgggcactggct--------------------- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1945805 155 + 2427316 accctgcctccatgtagtcatacctttgtgtaatgcctgttcacactgtactagggttagtgtgtctgaccaatggcacacagcagaagtgatggtaggtcacttacaagattaggtcat-aaaaaagaccatggcttttattttgggcactggct--------------------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1229282 155 + 1448899 accctgcctccatgtagtcatacctttgtgtagtgcccgttcacactgtaccagggttggtgtgtctgaccaatggcacacagcagaagtgatggcaggtcacttacaagattaggtcat-gaaaaagaccatggcttttattttgggcactggcc--------------------- i colAng1.NW_012119221v1 C 0 C 0 s canFam3.chr13 47942413 174 + 63241923 cacctacttctttgtagtcacacctgtgt---atgtcctcccagactctaccagccttggtctgagtaaccaatagcaaacaatggaagtgatggtatgtcacttctgagattaggtcataaaaaaagactatggcttcctttttggacactggaaagtgcccattctttcagacta i canFam3.chr13 C 0 C 0 e nomLeu3.chr9 69285898 3356 - 118206036 I a score=2422878.000000 s hg38.chr4_KI270787v1_alt 3685 441 + 111943 ctccctctgggggaagcgatgtggtgaggagtcttatgaagaggtctgtgtggccaggtgaagcctcctgtcaacagtcact---ctgtcaacagaagtggatcctccagacctagtcaggcctccaatgactgtagccttcgtgga-------ctcattgattgtagccagtgagagccattgagagtctctgagccaaagccacccagctaagctgctctcagattcctgatgcataggaattgtgaaataaaaaacatttgttattttaaaccactgtttgaagtaatttgttacacagaaa----cagctaacACAggaccctctgaggaatcgtgttgaatatatctcagaactgttcctccaaagatggggaggctgaggcatttatccataaaatcccattcccacctttgctgagagttAGGAACCCTTGGTGTGAACACTGGAGGT s panTro5.chr4 119565999 441 - 194502333 ctccctctgggggaagcgatgtggtgaggagtcttatgaagaggtctatgtggccaggtgaagcctcctgtcaacagtcact---ctgtcaacagaagtggatcctccagacctagtcaggcctccaatgactgtagccttcgcaga-------ctcattgattgtagccagtgagagccattgagagtctctgagccaaagtcacccagctaagctgctctcagattcctgatgcataggaattgtgaaataaaaaacatttgttattttaaaccactgtttgaagtaatttgttacacagaaa----cagctaacACAggaccctctgaggaatcgtgttgaatatatctcagaactgttcctccaaagatggggaggctgaggcatttatccataaaatcccattcccacctttgctgagagttaggaaccctcggTGTGAACACTGGAGGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120982282 440 - 195804263 ctccctctgggggaagcgatgtggtgaggagtcttatgaagaggtctatgtggccaggtgaagcctcctgtcaacagtcact---ctgtcaacagaagtggatcctccagacctagtcaggcctccaatgactgtagccttcgcgga-------ctcattgattgtagccagtgagagccattgagagtctctgagccaaagtcacccagctaagctgctctcagattcctgatgcataggaattgtgaaat-aaaaacatttgttattttaaaccactgtttgaagtaatttgttacacagaaa----cagctaacACAggaccctctgaggaatcgtgttgaatatatctcagaactgttcctccaaagatggggaggctgaggcatttatccataaaatcccattcccacctttgctgagagttaggaaccctcggTGTGAACACTGGAGGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4413363 441 - 17550833 ctccctctgggggaagcgatgtggtgaggagtcttatgaagaggtctatgtggccaggtgaagcctcctgtcaacagtcact---ctgtcaacagaagtggatcctccagacttagtcaggcctccaatgactgtagccttcgcgga-------ctcattgattgtagccagtgagagccattgagagtctctgagccaaagccacccagctaagctgctctcagattcctgatgcacaggaattgtgaaataaaaaatatttgttattttaaaccactgtttgaagtaatttgttacacagaaa----cagctaacAcaggactctctgaggaatcatgttgaatatatctcagaactgttcctccaaagatggggaggctgaggcatttatccataaaatcccattcccacctttgctgagagttAGGAACCCTCAGTGTGAACACTGGAGGT i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111492504 453 - 190429646 gtccctctgggggaagccatgtggtgaggagccttatgaagaggtccatgtggccaggtgaagcctcctgtcaacagtcacg--actgagcttggaagtggatcctccagacctagtcaggcctccaatgactgtagccttggttgactcaaggctcattgattgtagccaatgagagccactgagagtctctgagccaaagccaccccgctaagcttctctcagattcctgatgaacatgaattgtgaaataaaaaacgtttgttattttaaaccactgtttgaagtaatttgttacacagaaatagctaactaacacaggaccctctgaggaactgtgttgaatacatctcagaactgttcctccaaagatggggaggctgaggcatttatccacaaaatcccattcccacctttgctgagggttAGGAACCCTCAGTGTGAACACTGGAGGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110660618 453 - 189454096 gtccctctgggggaagccatgtggtgaggagccttatgaagaggtccatgtggccaggtgaagcctcctgtcaacagtcacg--actgagcttggaagtggatcctccagacctagtcaggcctccaatgactgtagacttggttgactcaaggctcattgattgtagccaatgagagccactgagagtctctgagccaaagccaccccgctaagtttctctcagattcctgatgaacatgaattgtgaaatcaaaaacgtttgttattttaaaccactgtttgaagtaatttgttacacagaaatagctaactaacacaggaccctctgaggaactgtgttgaatacatctcagaactgttcctccaaagatggggaggctgaggcatttatccacaaaatcccattcccacctttgctgagggttAGGAACCCTCAGTGTGAACACTGGAGGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13228400 453 + 26754465 gtccctctgggggaagccatgtggtgaggagccttatgaagagctccatgtggccaggtgaagcctcctgtcaacagtcacg--actgagcttggaagtggatcctccagacctagtcaggcctccaatgactgtagccttggttgactcaaggctcattgattgtagccaatgagagccactgagagtctctgagccaaagccaccccgctaagcttctctcagattcctgatgaacatgaattgtgaaataaaaaacgtttgttattttaaacctctgtttgaagtaatttgttacacagaaatagctaactaacacaggaccctctgaggaactgtgttgaatacatctcagaactattcctccaaagatggggaggctgaggcatttatccacaaaatcccattcccacctttgctgagggttAGGAACCCTAAGTGTGAACACTGGAGGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4130727 453 - 5137665 gtccctctgggggaagccatgtggtgaggagccttatgaagaggtccatgtggccaggtgaagcctcctgtcaatagtcacg--actgagcttggaagtggatcctccagacctagtcaggcctccaatgactgtagccttggttgactcaagtctcattgattgtagccaatgagagccactgagagtctctgagccaaagccaccccgctaagcttctctcagattcctgatgaacatgaattgtgaaataaaaaacgtttgttattttaaaccactgtttgaagtaatttgttacacagaaatagctaactaacacaggaccctctgaggaactgtgttgaatacatctcagaactgttcctccaaagatggggaggctgaggcatttatccacaaaatcccattactacctttgctgagggttAGGAACCCTCAGTGTGAACACTGGAGGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 37635 449 - 60632 gtccctctgggggaagccatgtgttgaggagccttatgaagaggtccatgtggccaggtgaagcctcctgtcaacagtcaca--actgagcttggaagtggatcctccagacctagtcaggcctccaatgactgtagccttggttgactcaaggctcattgattatagccaatgagagccactgagagtctctgagccaaagccaccccgctaagcttctctcagattcctgatgaacatgaattgtgaaataaaaaacatttgttattttaaaccactgtttgaagtaatttgtcacacagaaa----taactaacacaggaccctctgaggaactgtgttggatatatctcagaactgttcctccaaagatggggaagctgaggcatttatccacaaaatcccattcccacctttgctgagggttAGGAACCCTCAGTGTGAACACTGGAGGT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1945960 453 + 2427316 gtccctctgggggaagccatgtggtgaggagccttatgaagaggtccatgtggccaggtgaagcctcctgtcaacagtcacg--actgagcttggaagtggatcctccagacctagtcaggcctccaatgactgtagccttggttgactcaaggctcattgattgtagccaatgagagtcactgagagtctctgagccaaagccaccccgctaagcttctctcagattcctgatgaacatgaattgtgaaataaaaaacgtttgttattttaaaccactgtttgaagtaatttgttacacagaaatagctaactaacacaggaccctctgaagaactgtgttgaatacatctcagaactgttcctccaaagatggggaggctgaggcatttatccacaaaatcccattcctacctttgctgagggttAGGAACCCTCAGTGTGAACACTGGAGGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1229437 432 + 1448899 atccc--------------tgtggtgaggagccttatgaagaggtccatgtggccaggtgaagcctcctgtcaacagtcacg--actgagtttggaagtggatcctccagacctagtcaggcctccaatgactgtagccttggctga-------ctcattgactgtagccaatgagagccattgagagtctctgagccaaagccacccagctaagcttctctcagattcctgatgaacatgaattgtgaaataaaaaacgtttgttattttaaaccactgcttgaagtaatttgttacacagaaatcgctaactaacacaggaccctctgaggaactgtgttgaatacatctcagaactgttcctccaaagatggggaggctgaggcatttatccacaaaatcccattcccacatttgctgagggttAGGAACCCTCAGTGTGAACACTGGAGGT i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8581083 415 + 8790067 CTTGCTGTGGGAAAAGTCATACAGTGAGGTGCCTCATGGAGACATCTGCGTGGCCATGGAAagcc-cttgccacgtgtcacatgagtgggcttggaagtggg-cctccacaccctgtcacgctctggatgcctgtggc---------------------tggttccaacc---------ttgtgagggaccctgagcc-aggccacccagccaagctgctccctgatccctgacccacagaaaaggtgaagtaagaaatgtgtgttagttgaaacctctgtttgaaagacgttgttacacagaaacagagaactaacataGGACCCTTAGGAGCACTGTGTTCATTACACGTCAGAAATGTCCCATTGATGATAGGGAGGCTGAGGC----AGCCACAAAATCTCACTCCCACTTTGGCTGAGG---AGAAACCCTCAGAGTGGGCACTAAAGGC i otoGar3.GL873602 N 0 C 0 s canFam3.chr13 47942587 375 + 63241923 ctcactatgggggaagccatgtggtgaggagccccaggaataggtccagagggtgaagttaagcctcctaccaacagtcacataagtgtg-ttggaagtgaatgtttctgacccagtcatgcctcagatgactgcatccttg----------------------------------------tgagagactctgagccagcacaacccagcaaacctgctccctgattcctgacctagagaaactatggaacaagaaatgtttgttattttaaactaa-atttaaggcattttgtcacaccacaacaggtaactaatacaggaccctttgagga------------atacctcaaaaacctcccaccaaagatcaggaggctgaggcatttacccacaaaatcttattcccA--------------------------GAGTGGGCACTGGAGGT i canFam3.chr13 C 0 C 0 e nomLeu3.chr9 69285898 3356 - 118206036 I a score=119079.000000 s hg38.chr4_KI270787v1_alt 4126 25 + 111943 GAGATGCCATCAACGTGCTGGAGCT s panTro5.chr4 119566440 25 - 194502333 GAGATGCCATCAACGTGCTGGAGCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120982722 25 - 195804263 GAGATGCCATCAACGTGCTGGAGCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4413804 25 - 17550833 GAGATGCCATCAACGTGCTGGAGCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69289254 25 - 118206036 GAGATGCCATCGACATGCTGGAGCT i nomLeu3.chr9 I 3356 C 0 s rheMac8.chr5 111492957 24 - 190429646 GAGATGGCATCAACATGCTGAAAT- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110661071 24 - 189454096 GAGATGGCATCAACATGCTGAAAT- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13228853 24 + 26754465 GAGATGGCATCAACATGCTGAAAT- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4131180 24 - 5137665 GAGATGGCATCAACATGCTGAAAT- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 38084 25 - 60632 GAGATGGCATCAACATGCTGGAGCC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1946413 24 + 2427316 GAGATGGCATCAACATGCTGAAAT- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1229869 25 + 1448899 GAGATGGCATCAACATGCTGGAGCC i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8581498 25 + 8790067 GAGATGCTGCCATCCTCCCACGGCT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47942962 24 + 63241923 GGAATGCTGTCAACATCCAGAGCT- i canFam3.chr13 C 0 I 8 a score=112184.000000 s hg38.chr4_KI270787v1_alt 4151 19 + 111943 GTTCAACATTGTTGAAATt s panTro5.chr4 119566465 19 - 194502333 GTTCAACATTGTTGAAATt i panTro5.chr4 C 0 C 0 s panPan2.chr4 120982747 19 - 195804263 GTTCAACATTGTTGAAATt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4413829 19 - 17550833 GTTCAACATTGTTGAAATt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69289279 19 - 118206036 GTTCAACATTGTTGAAATt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111492981 18 - 190429646 -TTCAACACTGTTGAAATt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110661095 18 - 189454096 -TTCAACACTGTTGAAATt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13228877 18 + 26754465 -TTCAACACTGTTGAAATt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4131204 18 - 5137665 -TTCAACTCTGTTGAAATt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 38109 19 - 60632 GTTCAACACTGTTGAAATt i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1946437 18 + 2427316 -TTCAACACTGTTGAAATt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1229894 19 + 1448899 ATTCAACACTGTTGAAATt i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8581523 19 + 8790067 GTCTAGCATAGTCAAAATC i otoGar3.GL873602 C 0 C 0 e canFam3.chr13 47942986 8 + 63241923 I a score=9619799.000000 s hg38.chr4_KI270787v1_alt 4170 1688 + 111943 gaaactgacccaattttcccacagagctgatgtttatggttt-ctttgaacagacatagaaattgatcctctcaatcttaaaacttgaggaagttaacatttgtcttacctgagttcctttctcaggaaaccaaccgtcaggcctcccaaatagtatcaaggagctgaaactcactagattacttcatttggacagtgagagatcagaccccctcatctgtcatgactgcctaactgaccatctgcttcctgttgaccaactcctcttgtttaccctccctaattcctgttttcccacacatggttacatttcttccctgctatataaaccccttatcttagtaggtcagggagatggatttgagactgatctcccatctcttcagccacagtacctgattaaagcc---tttttttctttttaattatactttaagttctgggatacatgtgcagaatgtgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacc---catcatctacattaggtatttctcctaatgctatccttcccctagccccctaccccccgacaggccctggtgtgtgatattcccttccctgtgtccctgtgttctcattgttcaactcccacttatgagtgagaacatggggtgtttggttttctgttcctgtgttcgtttgctaagaatgatggtttccagtttcatccatgtccctgcaaaggacatga--acttatccttttttat-ggctgcatagtattccatggtgtatatgtgccacattttcttaatcctgtctatcattgatggacatt-gggttggttccaagtctttgctattgtgaatg--gtgctgcaataaacatacgtgtgcttgtgtctttacagtggaataatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagatccttaaggaattgccaaactgtcttccacaatga-ttgaactaatttacactcccactaacagtgtaaaagtgttcctatttctccacatcctctccagcatctgttgtttcttgac---ttaatgatt-gccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctaatgaccagtgatgatgagatttttttcatatgtttttttggctgcataaatgccttcttttgagaggtgtctgttcatatcctttgcccactttttgatgggg------ttttttttcttgtaaatttgtttaagttccttgtagattctggatattagccctttgttagatggatagattgcaaaaattttctaccattttgtaggttgccta-tcattctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttgttattttagtcatgaagtctttgcccatgcctatgtcctgaatgctattgcctaggttttcttctagggtttttatggttttaggtcttacgtttaagtccgtaatccatcttgagctaatttttgtataaggtgtaagaaaggggtcaagtttcagttttctgcatatgaaagccttcttctttagcaatattcatctcagtgattgtctgtctgtgt--tgagcagactgaacccctggtg s panTro5.chr4 119566484 1688 - 194502333 gaaactgacccaattttcccacagagctgatgtttatggttt-ctttgaacagacatagaaattgatcctctcaatcttaaaacttgagaaagttaacatttgtcttacctgagttcctttctcaggaaaccaaccgtcaggcctcccaaatagtatcgaggagctgaaactcactagattacttcatttggacagtgagagatcagactccctcatctgtcatgactgcctaactgaccatctgcttcctgttgaccaactcctcttgtttaccctccctaattcctgttttcccacacatggttacatttcttccctgctatataaaccccttatcttagtaggtcagggagatggatttgagactgatctcccatctcttcagccgcagtacctgattaaagcc---tttttttctttttaatgatactttaagttctgggatacatgtgcagaatgtgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacc---catcatctacattaggtatttctcctaatgctatccttcccctagccccctaccccccgacaggccctggtgtgtgatattcccttccctgtgtccatgtgttctcattgttcaactcccacttatgagtgagaacatggggtgtttggttttctgttcctgtgttagtttgctaagaatgatggtttccagtttcatccatgtccctgcaaaggacatga--acttatccttttttat-ggctgcatagtattccatggtgtatatgtgccacattttcttaatcctgtctatcattgatggacatt-gggttggttccaagtctttgctattgtgaatg--gtgctgcaataaacatacgtgtgcttgtgtctttacagtggaataatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagatccttaaggaattgccaaactgtcttccacaatga-ttgaactaatttacactcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcatctgttgtttcttgac---ttaatgatc-gccattctaactggtgtgagatagtatctcattgtggttttgatttgcatttctctaatgaccagtgatgatgagatttttttcatatgtttttttggctgcataaatgccttcttttgagaggtgtctgttcatatcctttgcccactttttgatgggg------ttttttttcttgtaaacttgtttaagttccttgtagattctggatattagccctttgttagatggatagattgcaaaaattttctaccattttgtaggttgccta-tcattctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttgttattttagtcatgaagtctttgcccatgcctatgtcctgaatgctattgcctaggttttcttctagggtttttatggttttaggtcttacgtttaagtccttaatccatcttgagctaatttttgtataaggtgtaagaaaggggtcaagtttcagttttctacatatgaaagccttcttctttagcaatattcatctcagtgattgtctctctgtgt--tgagcagactgaacccctggtg i panTro5.chr4 C 0 C 0 s panPan2.chr4 120982766 1687 - 195804263 gaaactgacccaattttcccacagagctgatgtttatggttt-ctttgaacagacatagaaattgatcctctcaatcttaaaacttgagaaagttaacatttgtcttacctgagttcctttctcaggaaaccaaccgtcaggcctcccaaatagtatcgaggagctgaaactcactagattacttcatttggacagtgagagatcagactccctcatctgtcatgactgcctaactgaccatctgcttcctgttgaccaactcctcttgtttaccctccctaattcctgttttcccacacatggttacatttcttccctgctatataaaccccttatcttagtaggtcagggagatggatttgagactgatctcccatctcttcagccgcagtacctgattaaagcc---tttttttctttttaatgatactttaagttctgggatacatgtgcagaatgtgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacc---catcatctatattaggtatttctcctaatgctatccttcccctagccccctaccccccgacaggccctggtgtgtgatattcccttccctgtgtccatgtgttctcattgttcaactcccacttatgagtgagaacatggggtgtttggttttctgttcctgtgttagtttgctaagaatgatggtttccagtttcatccatgtccctgcaaaggacatga--acttatccttttctat-ggctgcatagtattccatggtgtatatgtgccacattttcttaatcctgtctatcattgatggacatt-gggttggttccaagtctttgctattgtgaatg--gtgctgcaataaacatacgtgtgcttgtgtctttacagtggaataatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagatccttaaggaattgccaaactgtcttccacaatga-ttgaactaatttacactcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcatctgttgtttcttgac---ttaatgatc-gccattctaactggtgtgagatagtatctcattgtggttttgatttgcatttctctaatgaccagtgatgatgagatttttttcatatgtttttttggctgcataaatgccttcttttgagaggtgtctgttcatatcctttgcccactttttgatgggg-------tttttttcttgtaaacttgtttaagttccttgtagattctgtatattagccctttgttagatggatagattgcaaaaattttctaccattttgtaggttgccta-tcattctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttgttattttagtcatgaagtctttgcccatgcctatgtcctgaatgctattgcctaggttttcttctagggtttttatggttttaggtcttacgtttaagtccttaatccatcttgagctaatttttgtataaggtgtaagaaaggggtcaagtttcagttttctacatatgaaagccttcttctttagcaatattcatctcagtgattgtctctctgtgt--tgagcagactgaacccctggtg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4413848 1689 - 17550833 ggaactgacccaattttcccacagagctgatgtttatggttt-ctttgaacagacatagaaattgatcctctcaatcttaaaacttgagaaagttaacatttgtcttacctgagttcctttctcaggaaaccaaccgtcaggcctcccaaatagtatcaaggagcttaaactcactagattacttcatttggacagtgagagatcagaccccctcatctgtcatgactgcctaactgaccatctgcttcctgttgaccagctcctcttgtttaccctccctaattcctgttttcccacacatggttacatttcttccctgctatataaaccccttatcttagtaggtcggggagatggatttgagactgatctcccatctcttcggctgcagtacctgattaaagcc--ttttttttctttttaattatactttaagttctgcgatacatgtgcagaatgtgcaggtttgttacataggtatacatgtgccatggtggtttgttgcacccatcaacc---catcatctacattaggtatttctcctaatgctatccttcgcctagccccctaccccccgacaggccctggtgtgtgatattcccttccctgtgtccatgtgttctcattgttcaactcccacttatgagtgagaacatggggtgtttggttttctgttcctgtgttagtttgctaagaatgatggtttccagtttcatccatgtccctgcaaaggacatga--acttatccttttatat-ggctgcatagtattccatggtgtatatgtgccacattttcttaatcctgtctatcattgatggacatt--ggttggttctaagtctttgctattgtgaatg--gtgctgcaataaacatacgtgtgcttgtgtctttacagtggaataatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagatccttaaggaattgccacactgtcttccacaatgg-ttgaactaatttacactcccaccaacagtgtaaaagtgttcctatttctccacatcctctgcagcatctgttgtttcttgac---ttaatgatc-gccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctaatgaccagtgatgatgagatttttgtcatatg-ttttttggctgcataaatgccttcttttgagaggtgtctgttcatatcctttgcccactttttgatgggg----ttttttttttcttgtaaatttgtttaagttccttgtagattctggatattagccctttgttagatggatagattgcaaaaattttctaccgttttgtaggttgccta-tcattctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttgttattttagtcatgaagtctttgcccatgcctatgtcctgaatgctattgcctaggttttcttctagggtttttatggttttgggtcttacgcttaagtccttaatccatcttgagctaatttttgtataaggtgtaagaaaggggtcaagtttcagttttctgcatatgaaagccttcttctttagcaatattcatctcagtgattgtctctctgtgt--tgagcagactgaacccctggtg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69289298 1686 - 118206036 gaaactgacccaattttcccatagagctgatgtttatggttt-ctttgaacagacatagaaattgatcctctcagtcttaaaacttgagaaagttaa-gtttgtcttgcctcagttcgtttctcaggaaaccaaccatcaggcctcccagatagtatcaaggagctggaactcactagattactgcatttggacagtgagaggtcagactccctcatctgtcatgactgcctaactgaccatctgcttcctgttgaccaactccttttgtttaccctccctaattcctgttttcccacacatggttacatttcttccctgctatataaaccccttatcttagtaggtcagggagatggacttgagactgatctcccatctcttcggccgcagtacctgattaaagcctttttttttTCtttttaattatactttaagttctgggatacatgtgcagaacgtgcaagtttgttacacaggtatacatgtgccatggtggtttgctgcacccatcaacc---catcatctacattaggtatttctcctaatgctatccttcccctag-cccctaccccccgacaggccctggtgtgtgatattcccttccctgtgtccatgtgttctcattgttcaactcccacttatgagcgagaatatggggtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttccagtttcatccatgtccctgcaaaggacatga--acttatccttttttat-ggctgcatactattccatggtgtatatgtgccacattttcttaatc----ctatcaccgatggacatt-gggttggttccaagtctttgctattgtgaata--gtgctgcaataaacatacgtgtgcgtgtgtctttatagtggaataatttataatcctttgggtatatactcagtaatgggattgctgggtcaaatggtgtttctggttctagatccttaacgaattgccacactgtcttccacaatggtttgaactaatttacactcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcatctgttgtttcttgac---ttaatgatctgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctaatgaccagtgatgatgatatttttttcatatg-ttttttggatgcataaatgccttcttttgagaagtgactgttcatatcctttgcccactttttgatgggg-----ttgttttttcttgtaaatttgcttaagttccttgtagattctg-atattggccctttgtcagatggatagattgcaaaaattttctcccattttgtaggttgccta-tcactgtgatgatagtttcttttgctgcgcagaagctctttagtttaattagatcccatttctcaattttggcttttgttgccattgctcttggtgttttagtcatgaagtctttgcccacgcctatgtcctgaatgctattgcctaggttttcttctagggtttttatggttttgggtcttacgtttaagtccttaatccatcttgagttaatttttgtataaggtgtaagaaaggggtccagtttcagttttctgcatatgaaagccttcttctttagcaatattcatctcagtgattgtctctctgtgt--cgagcagactgaacccctggtg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111492999 1706 - 190429646 gaaactgacccaattttcccatagagctgatgtttatgtttt-ctttgaacaggcatagaaattgatcctctcagtcttaaaacttgagaaaattaacatttgtcttacctgagttcctttctcaggaagccaaccatcagaacttccagatagtatcaaggagctgaaactcactagattactgcatttggacagtgagaggtcagaccccctcacctgccatggctgcctaactgaccatccgcttcctgttgaccaactcttcttgcttaccctccctaattcctgttttcccacacatggttacatttcttccctgctataaaaaccccttatcttagtaggtcagggagatgtatttgagactga-ttcccatctcttcgactgcagtacctgattaaagtc-tttttTAttctttttaattatactttaagttctgggatacatgtgcagaacgtgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacc---catcatctacattaggtatttctcctaatgctatcctttctctagccccataccccccaacaggccctggtgtgtgatgtccccctccctgtgtccatgtgttctcattgtttaactcccacttgtgagtgagaacatgcggtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttccagtttcatccatgtccctgcaaagggcatgaacacacatcctttttcataggctgcatagtattccatggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgttattgtgaatatagtgcagcaataaacatacgtgtgcgtgtgtctttacagtgaaataatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagatccttgaggaattgccacactgtcttccacaatgg-ttgaactaatttacactcccaccaacagtgtaaaagctttcctatttctccacatcctctccagcatctgttgtttcctgactttttaatgatc-accattctaattggtgtgagatgatatctcactgtggttttgatttgcatttctctaatgaccaatgatgatgagatttttttcatatg-tttgttggttgcataaatgccttcttttgagaagtgtctgttcatatccttcacccactttttgatggggttgtttatttttttcctgtaaaattttttaagttccttgcagattctggatattagccctttatcagatagatagattgcaaaaattttcttccattttgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgctcatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttgggtcttacgtttaagtccttaatccatcttgagttaatttttgtataaagtgtaagaaaggggtccagtttcagtattctgcatatgaaagccttcttctttagcagtattcatcccagtgattggctccctgtgtgacgagcagactgaacccctggtg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110661113 1706 - 189454096 gaaactgacccaattttcccatagagctgatgtttatgtttt-ctttgaacaggcatagaaattgatcctctcagtcttaaaacttgagaaaattaacatttgtcttacctgagttcctttctcaggaagccaaccatcagaacttccagatagtatcaaggagctgaaactcactagattactgcatttggacagtgagaggtcagaccccctcacctgccatggctgcctaactgaccatccgcttcctgttgaccaactcttcttgcttaccctccctaattcctgttttcccacacatggttacatttcttccctgctataaaaaccccttatcttagtaggtcagggagatggatttgagactga-ttcccatctcttcgactgcagtacctgattaaagtc-tttttTAttctttttaattatactttaagttctgggatacatgtgcagaacgtgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacc---catcatctacattaggtatttctcctaatgctatcctttctctagccccataccccccaacaggccctggtgtgtgatgtccccctccctgtgtccatgtgttctcattgtttaactcccacttgtgagtgagaacatgcggtgtttggttttctgttcctgtgttagtttgctgagaatggtggtttccagtttcatccatgtccctgcaaagggcatgaacacacatcctttttcataggctgcatagtattccatggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgttattgtgaatatagtgcagcaataaacatacgtgtgcgtgtgtctttacagtgaaataatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagatccttgaggaattgccacactgtcttccacaatgg-ttgaactaatttacactcccaccaacagtgtaaaagctttcctatttctccacatcctctccagcatctgttgtttcctgactttttaatgatc-accattctaattggtgtgagatgatatctcactgtggttttgatttgcatttctctaatgaccaatgatgatgagatttttttcatatg-tttgttggttgcataaatgccttcttttgagaagtgtctgttcatatccttcacccactttttgatggggttgtttatttttttcctgtaaaattttttaagttccttgcagattctggatattagccctttatcagatagatagattgcaaaaattttcttccattttgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgctcatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttgggtcttacgtttaagtccttaatccatcttgagttaatttttgtataaagtgtaagaaaggggtccagtttcagtattctgcatatgaaagccttcttctttagcagtattcatcccagtgattggctctctgtgtgacgagcagactgaacccctggtg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13228895 1709 + 26754465 gaaactgacccaattttcccatagagctgatgtttatgtttt-ctttgaacaggcatagaaattgatcctctcagtcttaaaacttgagaaaattaacatttgtcttacctgagttcctttctcaggaagccaaccatcagaacttccagatagtatcaaggaggtgaaactcactagattactgcatttggacagtgagaggtcagaccccctcacctgccatggctgcctaactgaccatccgcttcctgttgaccaactcttcttgcttaccctccctaattcctgttttcccacacatggttacatttcttccctgctataaaaaccccttatcttagtaggtcagggagatggatttgagactga-ttcccatctcttcgactgcagtacctgattaaagtc-tttttTAttctttttaattatactttaagttctgggatacatgtgcagaacgtgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacccatcatcatctacattaggtatttctcctaatgctatcctttctctagccccataccccccaacaggccctggtgtgtgctgtccccctccctgtgtccatgtgttctcattgtttaactcccacttgtgagtgagaacatgcggtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttccagtttcatccatgtccctgcaaagggcatgaacacacatcctttttcataggctgcatagtattccatggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgttattgtgaatatagtgcagcaataaacatacgtgtgcgtgtgtctttacagtgaaataatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagatccttgaggaattgccacactgtcttccacaatgg-ttgaactaatttacactcccaccaacagtgtaaaagctttcctatttctccacatcctctccagcatctgttgtttcctgactttttaatgatc-accattctaattggtgtgagatgatatctcactgtggttttgatttgcatttctctaatgaccaatgatgatgagatttttttcatatg-tttgttggccacataaatgccttcttttgagaagtgtctgttcatatccttcacccactttttgatggggttgtttatttttttcctgtaaaattttttaagttccttgcagattctggatactagccctttatcagatagatagattgcaaaaattttcttccattttgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgctcatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttgggtcttacgtttaagtccttaatccatcttgagttaatttttgtataaagtgtaagaaaggggtccagtttcagtattctgcatatgaaagccttcttctttagcagtattcatcccagggattgactctctgtgtgacgagcagactgaacccctggtg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4131222 1707 - 5137665 gaaactgacccaattttcccatagagctgatgtttatggttt-ctttgaacagacatagaaattgatcctctcagtcttaaaacttgagaaaattaacatttgtctttcctgagttcctttctcaggaagccaaccatcagaacttccagatagtatcaaggagctgaaactcactagattactgcatttggacagtgagaggtcagaccccctcacctgccatggctgcctaactgaccatccgcttcctgttgaccaactcttcttgcttaccctccctaattcctgttttcccacacatggttacatttcttccctgctatataaaccccttatcttagtaggtcagggagatggatttgagactgatttcccaactcttcgactgcagtacctgattaaagtc-tttttTAttctttttaattatactttaagttctgggatacatgcgcagaacatgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacc---catcatctaccttaggtatttctcctaatgctatcctttctctagccccataccccccaacaggccctggtgtgtgatgtccccctccctgcgtccatgtgttctcattgtttaactcccacttgtgagtgagaacatgcggtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttccagtttcatccatgtccctgcaaagggcatgaacacacatcctttttcataggctgcatagtattccatggtgtatatgtgccacattttctttatccagtctatcattggcgggcatttgggttggttccaagtctttgttattgtgaatatagtgcagcagtaaacatacatgtgcatgtgtctttacagtggaataatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagatccttgagaaattgccacactgtcttccacaatgg-ttgaactaatttacactcccaccaacagtgtaaaagctttcctatttctccacatcctctccagcatctgttgtttcctgactttttaatgatc-accgttctaattggtgtgagatgatatctcactgtggttttgatctgcatttctctaatgaccaatgatgatgagatttttttcatatg-tttgttggttgcataaatgccttcttttgagaagtgtctgttcatatccttcacccactttttgatggggttgtttatttttttcctgtaaaattttttaagttccttgcagattctggatattagccctttgtcagatagatagattgcaaaaattttcttccattttgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgctcatgcctatgtcctgaatggtattacctaggttttcttctagggtttttatggttttgggtcttacgtttaagtccttaatccatcttgagttaatttttgtataaagtgtaagaaaggggtccagtttcagtcttctgcatatgaaagccttcttctttagcagtattcatcccagtgattggctctctgtgtgacgagcagactgaacccctggtg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 38128 1695 - 60632 gaaactgacccaattttcccatagagctgatgtttatggttt-ctttgaacagacatagaaattgatcctctcagtcttaaaacttgagaaaattaacatttgtcttacctgagttcctttctcaggaagccaaccatcagaacttccagatagtatcaaggagctgaaactcactagattactgcatttggacagtgagaggtcagaccccctcacctgccatggctgcctaactgaccatccgcttcctattgaccaactcttcttgcttaccctccctagttcctgttttcccacacatggttacatttcttccctgctatataaaccccttatcttagtaggtcagggagatggatttgagactgatttcccatctcttcaactgcagtacctgattaaag-----------tctttttAattctactttaagttctgggatacatgcacagaacgtgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacc---catcatctaccttaggtatttctcctaatgctatcctttctctagccccataccccccaacaggctctggtgtgtgatgttcccctccctgggtccatgtgttctcattgtttaactcccacttgtgagtgagcacatgcggtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttccagtttcatccatgtccctgcaaaggacatga--acacatcctttttcataggctgcatagtattccatggtgtatatgtgccacattttctttatccagtctatcattgacgggcatttgggttggttccaagtctttgttattgtgaatgtagtgcagcagtaaacatacgggtgcgtgtgtctttacagtggaataatttataatcctttgggtatatacccagtattgggattgctgggtcaaatggtatttctggttctagatccttgaggaattgccacactgtcttccacaatgg-ttgaactaatttacactcccaccaacagtgtaaaaactttcctatttctccacatcctctccagaatctgttgtttcctgactttttaatgatc-accattctaattggtgtgagatgatatctcactgtggttttgatttgcatttctctaatgaccaatgatgatgagatttttttcatatg-tttgttggttgcataaatgccttcttttgagaagtgtctgttcatatccttcacccactttttgatggggttgtttatttttttcctgtaaaattttttaagttccttgcagattctggatattagccctttgtcagatagatagattgcaaaaattttcttccattttgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttgacttttgttgccattgcttttggtgttttagtcatgaagtctttgctcatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttgggtcttacgtttaagtccttaatccatcttgagttaatttttgtataaagtgtaagaaaggggtccagtttcagtcttctgcatgtgaaagccttcttctttagcagtattcatcccagtgattggctctctgcgtgacgagcagactgaacccctggtg i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1946455 1707 + 2427316 gaaactgacccaattttcccatagagctgatgtttatggttt-ctttgaacagacatagaaattgatcctctcaatcttaaaacttgagaaaattaacatttgtctttcctgagttcctttctcaggaagccaaccatcagaacttccagatagtatcaaggagctgaaactcactagattactgcgtttggacagtgagaggtcagaccccctcacctgccatggctgcctaactgaccatccgcttcctgttgaccaactcttcttgcttaccctccctaattcctgttttcccacacatggttacatttcttccctgctatataaaccccttatcttagtaggtcagggagatggatttgagactgatttcccatctcttcgactgcagtacctgattaaagtc-tttttTAttctttttaattatactttaagttctgggacacatgcacagaacgtgcaggcttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacc---catcatctacattaggtatttctcctaatgctatcctttctctagccccataccccccaacaggccctggtgtgtgatgtccccctccctgtgtccatgtgttctcattgtttaactcccacttgtgagtgagaacatgcggtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttccagtttcatccatgtccctgcaaagggcatgaacacacatcctttttcataggctgcatagtattccatggtgtatatgtgccacattttctttatccagtctatcattgacgggcatttgggttggttccaagtctttgttattgtgaatatagtgcagcaataaacatacgtgtgcatgtgtctttacagtggaataatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagatccttgaggaatcgccacactgtcttccacaatgg-ttgaactaatttacactcccaccaacagtgtaaaagctttcctatttctccacatcctctccagcatctgttgtttcctgactttttaatgatc-accattctaattggtgtgagatgatatctcactgtggttttgatttgcatttctctaatgaccaatgatgatgagatttttttcatatg-tttgttggttgcataaatgccttcttttgagaagtgtctgttcatatccttcacccactttttgatggggttgtttatttttttcctgtaaaattttttaagttccttgcagattctggatattagccctttgtcagatagatagattgcaaaaattttcttccattttgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgctcatgcctatgtcctgaatggtattgcctaggttttattctagggtttttatggtttggggtcttacgtttaagtccttaatccatcttgagttaatttttgtataaagtgtaagaaaggggtccagtttcaatcttctgcatatgaaaaccttcttctttagcagtattcatcccagtgattggctctctgtgtgacgagcagactgaacccctggtg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1229913 1706 + 1448899 gaaactgacccaattttcccatagagctgatttttatggtttactttgaacagacatagaaattgatcctctccgtcttaaaacttgagaaaattaacatttgtcttacctgagttcctttctcaggaaaccaaccaccagaacttccagatagtatcaaggaggtgaaactcactagatccctgcatttggacagtgagaggtcagaccccctcacctgccatgactgcctaactgaccatctgcttcctgttgaccaactcttcttgctcaccctccctaattgctgttttcccacacatggttacatttcttccctgctatacaaaccccttatcttagtaggtcagggagataaatttgagactgatttctcatctcctcaactgcagtacctgattaaagtc-tttttttttCtttttaattatactttaagttctgggatacgtgtgcagaacgtgcaggtttgttacatagatatacatgtgccatggtggtttgctgcacccatcaacc---catcatctacattaggtatttctcctaatgctgtcctttctctagccccataccccccaacaggccctggtgtgtgatgttcacctccctgtgtccatgtgttttcattgttcaactcccacttgtgagtgagaacatgtggtgtttggttttctgttcctgtgttagtttgctgagaatgatggttttcagtttcatccatgtccctgcaaaggacatga--acacatcctttttcataggctgcatagtattccatggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgttattgtgaatgtagtgcagcaataaacatacgtgtgcatgtgtctttacagtggaataatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagatccttgaggaattgccacactgtcttccacaatgg-ttgaactaatttacactcccaccaacagtgtaaaagctttcctgtttctccacatcctctccagcatctgttgtttcctgactttttaatgatc-acctttctaactggtgtgggatggtatctcactgtggttttgatctgcatttctctaatgaccagtgatgatgagatttttttcatatg-tttgttggttgcataaatgccttcttttgagaagtgtctgttcatatccttcacccacttttagatggggttgtttatttttttcctgtaaaattttttaagttccttgcagattctggatattagccctttatcagatagatagattgcaaaaatttttttccattttgtaggttgcctgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtattttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggttttcttctggggtttttatggtttggggtcttacgtttaagtccttaatgcatcttgagttaatttttgtataaagtgtaagaaaggggtccagtttcagtcttctgcatatgaaagccttcttcttcagcagtattcatcccagtgattggctctctgtgtgactagcagactgaacccctggtg i colAng1.NW_012119221v1 C 0 C 0 e otoGar3.GL873602 8581542 0 + 8790067 C e canFam3.chr13 47942986 8 + 63241923 I a score=87850.000000 s hg38.chr4_KI270787v1_alt 5858 10 + 111943 ttcagtaaGC s panTro5.chr4 119568172 10 - 194502333 ttcagtaaGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 120984453 10 - 195804263 ttcagtaaGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4415537 10 - 17550833 ttcagtaaGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69290984 10 - 118206036 ttcagtaaGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111494705 10 - 190429646 ttccgTAAGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110662819 10 - 189454096 ttccgTAAGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13230604 10 + 26754465 ttccgTAAGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4132929 10 - 5137665 ttccgTAAGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 39823 10 - 60632 ttccgTAAGG i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948162 10 + 2427316 ttccgTAAGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1231619 10 + 1448899 ttccgTAAGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52975246 10 - 190850796 TTCAGTAAGA i calJac3.chr3 N 0 C 0 s saiBol1.JH378162 8137236 10 - 15139346 TTCAGTAGGA i saiBol1.JH378162 N 0 C 0 s cebCap1.NW_016107439v1 6919289 10 - 7304997 TTCAGTAAGA i cebCap1.NW_016107439v1 N 0 C 0 s aotNan1.NW_018493494v1 9337721 10 - 11631747 TTCAGTAAAA i aotNan1.NW_018493494v1 N 0 C 0 e otoGar3.GL873602 8581542 0 + 8790067 C e canFam3.chr13 47942986 8 + 63241923 I a score=71432.000000 s hg38.chr4_KI270787v1_alt 5868 6 + 111943 AAATCA s panTro5.chr4 119568182 6 - 194502333 AAATCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120984463 6 - 195804263 AAATCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4415547 6 - 17550833 AAATCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69290994 6 - 118206036 AAATCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111494715 6 - 190429646 AAATCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110662829 6 - 189454096 AAATCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13230614 6 + 26754465 AAATCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4132939 6 - 5137665 AAATCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 39833 6 - 60632 AAATCA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948172 6 + 2427316 AAATCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1231629 6 + 1448899 AAATCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52975256 6 - 190850796 AAATCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8137246 6 - 15139346 AAATCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6919299 6 - 7304997 AAATCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9337731 6 - 11631747 AAATCA i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47942994 6 + 63241923 AAATTG i canFam3.chr13 I 8 C 0 e otoGar3.GL873602 8581542 0 + 8790067 C a score=788396.000000 s hg38.chr4_KI270787v1_alt 5874 80 + 111943 AAGGTGGGCTATGATTTCAGGAACGTATGAGGAAAGGGGGCACAA-----------TAAAGCATCTA----------A--ATAGTATCATCTTTAACGTTGCC s panTro5.chr4 119568188 80 - 194502333 AAGGTGGGCTATGATTTCAGGAACGTATGTGGAAAAGGGGCACAA-----------TAAAGCATCTA----------A--ATAGTATCATCTTTAACGTTACC i panTro5.chr4 C 0 C 0 s panPan2.chr4 120984469 80 - 195804263 AAGGTGGGCTATGATTTCAGGAACGTATGTGGAAAAGGGGCACAA-----------TAAAGCATCTA----------A--ATAGTATCATCTTTAACGTTACC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4415553 79 - 17550833 AAGGTGGGCTATGATTTCAGGAACGTATGTGGAAA-GGGGCACAA-----------TAAAGCATCTA----------A--ATAGTATCATCTTTAACGTTGCC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291000 80 - 118206036 AAGGTGGGCTATGATTTCAGGAACGTATGTGGAAAGGGGGCACAA-----------TAAAGCATGTA----------A--ATAGTATCATCTTTAACGTTGCC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111494721 82 - 190429646 AAGGTGGGCAATGATTTCAGGAACATATGTGGAGAGGGGGCATAA-----------AGGAGCATCTA----------ATGATAGTATCATCTTTAACGTTATC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110662835 82 - 189454096 AAGGTGGGCAATGATTTCAGGAACATATGTGGAGAGGGGGCATAA-----------AGGAGCATCTA----------ATGATAGTATCATCTTTAACGTTATC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13230620 82 + 26754465 AAGGTGGGCAATGATTTCAGGAACATATGTGGAGAGGGGGCACAA-----------AGGAGCATCTA----------ATGATAGTATCATCTTTAACGTTATC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4132945 82 - 5137665 AAGGTGGGCAATGATTTCAGGAATATATGTGGAGAGGGGGCACAA-----------AGGAGCATCTA----------ATGATAGTATCATCTTTAACGTTATC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 39839 82 - 60632 AAGGTGGGCCATGATTTCAGGAACATATGTGGAGAGGGGGCACAA-----------AGGAGCATCTA----------ATGATAGTATCATCTTTAACGTTATC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948178 82 + 2427316 AAGGTGGGCCATGATTTCAGGAATATATGTGGAGAGGGGGCACAA-----------AGGAGCATCTA----------ATGATAGTATCATCTTTAACGTTATC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1231635 82 + 1448899 AAGGTGGGCCATGATTTCAGGAACATATGTGGAGAGGGGGAACAA-----------AGGAGCATCTA----------ATGATAGTATCATCTTTAACGTTGTC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52975262 81 - 190850796 AAGGTGGGCTTTGATTTCAGGAACATATGTGGAGAGGGGACCCAG-----------TAAAGCATCCA----------ATGATAGTATCATCTTTAAT-TTGCC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8137252 81 - 15139346 AAGGTGGGCTTTGATTTCAGGAACATATGTGCAGAGGGGGCCCAA-----------TAAAGCATCCA----------ATGATAGTATCATCTTTAAT-TTGCC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6919305 81 - 7304997 AAGGTGGGCTTTGATTTCAGGAACATACGTGGAGAGGGGGCCCAA-----------TAAACCATCCA----------GTGATAGTATCATCTTTAAT-TTGCC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9337737 81 - 11631747 GAGGTGGGCTTTGATTTCAGGAACATATGTGGAGAGGGGGCCCAA-----------TAAAGCATCCA----------ATGACAGTATCATCTTTAAT-TTGCC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8581542 93 + 8790067 AAGGTGGGCTTTAATTTCAGGACCTTCTGTGAAGAGGGGCCCAAATGAGCATCTGCTGAAGTATCTA----------AAGACAGCATCGCATCTAACTTGGTC i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47943000 79 + 63241923 GAGGTGGGCT-----------AAGGTATATGAGGTGGGGGTC--A-----------ATAAGCATCTACTAATGTCTTATGATAGTAACATTTTTGACTTTGCC i canFam3.chr13 C 0 C 0 a score=847364.000000 s hg38.chr4_KI270787v1_alt 5954 67 + 111943 AAAACAAGATACAGGGTTTAAACAATGTGAAGCTCT-CTTGAGGATCTTTTCCCTCTTTATTTAC--TGT s panTro5.chr4 119568268 67 - 194502333 AAAACAAGATACAGGGTTTAAACAATGTGAAGCTCT-CTTGAGGATCTTTTCCCTCTTTATTTAC--TGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120984549 67 - 195804263 AAAACAAGATACAGGGTTTAAACAATGTGAAGCTCT-CTTGAGGATCTTTTCCCTCTTTATTTAC--TGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4415632 67 - 17550833 AAAACAAGATACAGGGTTTAAACAATGTGAAGCTCT-CTTGAGGATCTTTTCCCTCTTTATTTAC--TGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291080 67 - 118206036 AAAACAAGATACAGGTTTTAAACAATGTGAAGCTCT-CTTGAGGATCTTTTCCCTCTTTATTTAC--TGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111494803 67 - 190429646 AAAACGAGATACAGGTTTTAAACAATGTGAAGCTCT-CTTGAGGATCTTTTCCCTCTTTATTTAC--TGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110662917 67 - 189454096 AAAACGAGATACAGGTTTTAAACAATGTGAAGCTCT-CTTGAGGATCTTTTCCCTCTTTATTTAC--TGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13230702 67 + 26754465 AAAACGAGATACAGGTTTTAAACAATGTGAAGCTCT-CTTGAGGATCTTTTCCCTCTTTATTTAC--TGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133027 67 - 5137665 AAAACGAGATACAGGTTTTAAACAATGTGAAGCTCT-CTTGAGGATCTTTTCCCTCTTTATTTAC--TGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 39921 67 - 60632 AAAACGAGATACAGGTTTTAAACAATGTGAAGCTCT-CTTGAGGATCTTTTCCCTCTTTATTTAC--TGT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948260 67 + 2427316 AAAACGAGATACAGGTTTTAAACAATGTGAAGCTCT-CTTGAGGATCTTTTCCCTCTTTATTTAC--TGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1231717 67 + 1448899 AAAACGAGATACAGGTTTTAAACAATGTGAAGCTCT-CTTGAGGATCTTTACCCTCTTTATTTAC--TGT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52975343 67 - 190850796 AAAACAAGATACAGGTTTTAAATAATGTGAAGCTGT-CTTGAGGATATTTTCCCTCTTTATTTAC--TGT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8137333 67 - 15139346 AAAACAAGATACAGGTTTTAAATAATGTGAAGCTGT-CTTGAGGATATTTTCTCTCTTTATTTAC--TGT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6919386 67 - 7304997 AAAACAAGATACAGGTTTTAAATAATGTGAAGCTGT-CTTGAGGATATTTTCCTTCTTTAGTTAC--TGT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9337818 67 - 11631747 AAAACAAGATACAGGTTTTAAATAATGTGAAGCTGT-TTTGAGGATATTTTCCCTCTTTATTTAC--TGT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8581635 69 + 8790067 ACAGCGAGATACAGGTCTTACATGACATGAGGCTCT-CTTTAGGACTTTTCTCCTCTTTATTTACCATGT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47943079 68 + 63241923 AGGACAAGATACAGGTCTCATATAACAGGAAGCTTTCCTTTATGAACTTT--CCTCTTTATTTACTATGT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4046961 66 - 5279953 AGGACATGATACAGA-TTCATTTAACATGAAGATCT-GCTTAGGGGCTTTTCCCTTTTTATTTAC--CGT i dasNov3.JH568349 N 0 I 1260 a score=82841.000000 s hg38.chr4_KI270787v1_alt 6021 6 + 111943 TAGTTT s panTro5.chr4 119568335 6 - 194502333 TAGTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120984616 6 - 195804263 TAGTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4415699 6 - 17550833 TAGTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291147 6 - 118206036 TAGTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111494870 6 - 190429646 TAGTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110662984 6 - 189454096 TAGTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13230769 6 + 26754465 TAGTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133094 6 - 5137665 TAGTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 39988 6 - 60632 TAGTTT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948327 6 + 2427316 TAGTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1231784 6 + 1448899 TAGTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52975410 6 - 190850796 TAGTTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8137400 6 - 15139346 TAGTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6919453 6 - 7304997 TAGTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9337885 6 - 11631747 TAGTTT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8581704 6 + 8790067 TAGTTT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47943147 6 + 63241923 TAGTCT i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4047027 1260 - 5279953 I a score=215594.000000 s hg38.chr4_KI270787v1_alt 6027 20 + 111943 CTT--AGTCTTCAAAGTTTATC s panTro5.chr4 119568341 20 - 194502333 CTT--AGTCTTCAAAGTTTATC i panTro5.chr4 C 0 C 0 s panPan2.chr4 120984622 20 - 195804263 CTT--AGTCTTCAAAGTTTATC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4415705 20 - 17550833 CTT--AGTCTTCAAAGTTTATC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291153 20 - 118206036 CTC--AGTCTTCAAAGTTTATC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111494876 20 - 190429646 CTC--AGTCTTCAAAGTTTATC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110662990 20 - 189454096 CTC--AGTCTTCAAAGTTTATC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13230775 20 + 26754465 CTC--AGTCTTCAAAGTTTATC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133100 20 - 5137665 CTC--AGTCTTCAAAGTTTATC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 39994 20 - 60632 CTC--AATCTTCAAAGTTTATC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948333 20 + 2427316 CTC--AGTCTTCAAAGTTTATC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1231790 20 + 1448899 CTC--AGTCTTCAAAGTTTATC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52975416 22 - 190850796 TTCAAAGTCTTCAAAGTTCATC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8137406 22 - 15139346 TTCAAAGTCTTCAAAGTTCATC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6919459 22 - 7304997 TTCAAAGTCTTCAAAGTTCATC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9337891 22 - 11631747 TTCAAAGTCTTCAAAGTTCATC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8581710 22 + 8790067 TTCAAAATCTGCAAAGTTCACC i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47943153 20 + 63241923 TTCACAATCTGC--AGTTCATC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4048287 20 - 5279953 CTA--AGTTTATAAAGTTTTTT i dasNov3.JH568349 I 1260 C 0 a score=402942.000000 s hg38.chr4_KI270787v1_alt 6047 37 + 111943 -------------------TCATAGAAATAGTA---------ATCCAAGCAGAACTGGAACTGTT s panTro5.chr4 119568361 37 - 194502333 -------------------TCATAGAAATAGTA---------ATCCAAGCAGAACTGGAACTGTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120984642 37 - 195804263 -------------------TCATAGAAATAGTA---------ATCCAAGCAGAACTGGAACTGTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4415725 37 - 17550833 -------------------TCATAGAAATAGTA---------ATCCAAGCAGAACTGGAACTGTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291173 37 - 118206036 -------------------TCACAGAAATAGTA---------ATCCAAGCAGAACTGGAACTGTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111494896 37 - 190429646 -------------------TCATGGAAATATTA---------ATCCAAGCAGAACTGGAACTGTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110663010 37 - 189454096 -------------------TCATGGAAATATTA---------ATCCAAGCAGAACTGGAACTGTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13230795 37 + 26754465 -------------------TCATGGAAATATTA---------ATCCAAGCAGAACTGGCACTGTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133120 37 - 5137665 -------------------TCATGGAAATATTA---------ATCCAAGCAGAACTGGAACTGTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 40014 37 - 60632 -------------------TCATGGAAATATTA---------ATCCAAGCAGAACTGGAACTGTT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948353 36 + 2427316 -------------------TCATGG-AATATTA---------ATCCAAGCAGAACTGGAACTGTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1231810 37 + 1448899 -------------------TCAAGGAAATATTA---------ATCCAAGCAGAACTGGAACTGTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52975438 37 - 190850796 -------------------CCACAGAAACATTA---------ATCCAGGCAGAACTGGAACTGTT i calJac3.chr3 C 0 I 82 s saiBol1.JH378162 8137428 37 - 15139346 -------------------CCACAGAAACATTA---------ATCCAGGCAGAACTGGAACTGTT i saiBol1.JH378162 C 0 I 82 s cebCap1.NW_016107439v1 6919481 37 - 7304997 -------------------CCACAGAAACATTA---------ATCCAGGCAGAACTGGAATTGTT i cebCap1.NW_016107439v1 C 0 I 82 s aotNan1.NW_018493494v1 9337913 37 - 11631747 -------------------CCACAGAAACATTA---------ATCCAGGCAGAACTGGAACTGTT i aotNan1.NW_018493494v1 C 0 I 94 s otoGar3.GL873602 8581732 37 + 8790067 -------------------CTTCAGAAACATTA---------ACCCAGGCAGAACTGGAATTTCT i otoGar3.GL873602 C 0 I 174 s mm10.chr5 76390026 35 + 151834684 -------------------TCATGAAAATGCAG---------AAATAGGGAGAGAAGGAAGAC-- i mm10.chr5 N 0 C 0 s canFam3.chr13 47943173 37 + 63241923 -------------------TTACAGAAACATTA---------ACCTAGGCAGAACTGGAATTTTT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4048307 54 - 5279953 AATTAAAAAAAGCAATCTGTTATTAAAGTATTGTCTAGAAATACCCAAAGAAGA----------- i dasNov3.JH568349 C 0 C 0 a score=30082.000000 s hg38.chr4_KI270787v1_alt 6084 3 + 111943 TTA s panTro5.chr4 119568398 3 - 194502333 TTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120984679 3 - 195804263 TTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4415762 3 - 17550833 TTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291210 3 - 118206036 TTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111494933 3 - 190429646 TTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110663047 3 - 189454096 TTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13230832 3 + 26754465 TTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133157 3 - 5137665 TTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 40051 3 - 60632 TTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948389 3 + 2427316 TTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1231847 3 + 1448899 TTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52975557 3 - 190850796 TTT i calJac3.chr3 I 82 C 0 s saiBol1.JH378162 8137547 3 - 15139346 TTT i saiBol1.JH378162 I 82 C 0 s cebCap1.NW_016107439v1 6919600 3 - 7304997 TTT i cebCap1.NW_016107439v1 I 82 C 0 s mm10.chr5 76390061 3 + 151834684 TTA i mm10.chr5 C 0 C 0 s canFam3.chr13 47943210 2 + 63241923 -TA i canFam3.chr13 C 0 I 127 s dasNov3.JH568349 4048361 3 - 5279953 TTA i dasNov3.JH568349 C 0 C 0 e aotNan1.NW_018493494v1 9337950 94 - 11631747 I e otoGar3.GL873602 8581769 174 + 8790067 I a score=84154.000000 s hg38.chr4_KI270787v1_alt 6087 8 + 111943 AAAACTCC s panTro5.chr4 119568401 8 - 194502333 AAAACTCC i panTro5.chr4 C 0 C 0 s panPan2.chr4 120984682 8 - 195804263 AAAACTCC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4415765 8 - 17550833 AAAACTCC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291213 8 - 118206036 AAAACTCC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111494936 8 - 190429646 AAAACTCC i rheMac8.chr5 C 0 I 1 s macFas5.chr5 110663050 8 - 189454096 AAAACTCC i macFas5.chr5 C 0 I 1 s macNem1.NW_012012466v1 13230835 8 + 26754465 AAAACTCC i macNem1.NW_012012466v1 C 0 I 1 s cerAty1.NW_012001307v1 4133160 8 - 5137665 AAAACTCC i cerAty1.NW_012001307v1 C 0 I 1 s chlSab2.chr7_KE147969v1_random 40054 8 - 60632 AAAACTCC i chlSab2.chr7_KE147969v1_random C 0 I 1 s manLeu1.NW_012104388v1 1948392 8 + 2427316 AAAACTCC i manLeu1.NW_012104388v1 C 0 I 1 s colAng1.NW_012119221v1 1231850 8 + 1448899 AAAACTCC i colAng1.NW_012119221v1 C 0 I 1 s calJac3.chr3 52975560 8 - 190850796 TAAACTCA i calJac3.chr3 C 0 I 1 s saiBol1.JH378162 8137550 8 - 15139346 TAAACTCC i saiBol1.JH378162 C 0 I 1 s cebCap1.NW_016107439v1 6919603 8 - 7304997 AAAACTCC i cebCap1.NW_016107439v1 C 0 I 1 s mm10.chr5 76390064 8 + 151834684 AAAATAGA i mm10.chr5 C 0 C 0 s canFam3.chr13 47943339 8 + 63241923 AAAACACC i canFam3.chr13 I 127 I 3 s dasNov3.JH568349 4048364 8 - 5279953 AAAATACC i dasNov3.JH568349 C 0 C 0 e aotNan1.NW_018493494v1 9337950 94 - 11631747 I e otoGar3.GL873602 8581769 174 + 8790067 I a score=2198296.000000 s hg38.chr4_KI270787v1_alt 6095 178 + 111943 -AAAATGCATCATTCACAGATTGCCATTGTTAAAATTGTCTGCCATTTTATATGCTATAAAAATAC-ACACACGT--TTTTATTGAAATCA---TAATCATAG--TTTATAGCCTGCTTTTGTCACTAACAAATATATGGAAAACAATGTCCAATGTCAAGTGATACCATTTTAATAAGTAAATCCT s panTro5.chr4 119568409 176 - 194502333 -AAAATGCATAATTCACAGATTGCCATTGTTAAAATTGTCTGCCATTTTATATGCTATAAAAATAC-ACAC--GT--TTTTATTGAAATCA---TAATCATAG--TTTATAGCCTGCTTTTGTCACTAACAAATATATGGAAAACAATGTCCAATGTCAAGTGATACCATTTTAATAAGTAAATCCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120984690 176 - 195804263 -AAAATGCATAATTCACAGATTGCCATTGTTAAAATTGTCTGCCATTTTATATGCTATAAAAATAC-ACAC--GT--TTTTATTGAAATCA---TAATCATAG--TTTATAGCCTGCTTTTGTCACTAACAAATATATGGAAAACAATGTCCAATGTCAAGTGATACCATTTTAATAAGTAAATCCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4415773 178 - 17550833 -AAAATGCATAATTCACAGATTGCCATTGTTAAAATTGTCTGCCATTTTATATGCTATAAAAATAC-ATACACGT--TTTTATTGAAATCA---TAATCATAG--TTTATAGCCTGCTTTTGTCGCTAACAAATATATGGAAAACAATGTCCAATGTCAAGTGATACCATTTTAATAACTAAATCCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291221 181 - 118206036 -AAAATGCATAATTCACAGATTGCCGTTGTTACAATTGTGTGCCATTTTATATGCTATAAAAATAC-ACACATGT--TTTTATTGAAATCATATTAATCATAG--TTTATAGCCTGCGTTTGTCACTAACAAATATATGGAAAAGAATATCCAATGTCAAGTGATACCATTTTAATAACTAAATCTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111494945 181 - 190429646 -AAAATGCGTAATTCACAGATTACCATTGTTAAAATTGTGTGCCATTTTGTATGCTACAAAAATAC-ACACACGT--TTTTATTGAAATCACATTAATCATAG--TTTATAGCTTGCTTTTGTCACTAACAAATATATGGAAAACAATGTCCAATGTCAAGTGATACCATTTTAATAACTAAATCCT i rheMac8.chr5 I 1 C 0 s macFas5.chr5 110663059 181 - 189454096 -AAAATGCGTAATTCACAGATTACCATGGTTAAAATTGTGTGCCATTTTGTATGCTACAAAAATAC-ACACACGT--TTTTATTGAAATCACATTAATCATAG--TTTATAGCTTGCTTTTGTCACTAACAAATATATGGAAAACAATGTCCAATGTCAAGTGATACCATTTTAATAACTAAATCCT i macFas5.chr5 I 1 C 0 s macNem1.NW_012012466v1 13230844 181 + 26754465 -AAAATGCGTAATTCACAGATTACCATTGTTAAAATTGTGTGCCATTTTGTATGCTACAAAAATAC-ACACACGT--TTTTATTGAAATCACATTAATCATAG--TTTATAGCTTGCTTTTGTCACTAACAAATATATGGAAAACAATGTCCAATGTCAAGTGATACCATTTTAATAACTAAATCCT i macNem1.NW_012012466v1 I 1 C 0 s cerAty1.NW_012001307v1 4133169 181 - 5137665 -AAAATGCATAATTCACAGATTACCATTGTTAAAATTGTGTGCCATTTTGTATGCTACAAAAATAC-ACACACGT--TTTTATTGAAATCACATTAATCATAG--TTTATAGCTTGCTGTTGTCACTAACAAATATATGGAAAACAACGTCCAATGTCAAGTGATACCATTTTAATAACTAAATCCT i cerAty1.NW_012001307v1 I 1 C 0 s chlSab2.chr7_KE147969v1_random 40063 181 - 60632 -AAAATGCGTAATTCACAGATTACCATTGTTAAAATTGTGTGCCATTTTGTATGTTACAAAAATAC-ACACACGT--TTTTATTGAAATCACATTAATCATAG--TTTATAGCTTGCTTTTGTCACTAAAAAATATATGGAAAACAATGTCCAATGTCAAGTGATACCATTTTAATAACTAAATCCT i chlSab2.chr7_KE147969v1_random I 1 C 0 s manLeu1.NW_012104388v1 1948401 181 + 2427316 -AAAATGCGTAATTCACAGATTACCATTGTTAAAATCGTGTGCCATTTTGTATGCTACAAAAATAC-ACACACGT--TTTTATTGAAATCACATTAATCATAG--TTTATAGCTTGCTTTCGTCACTAACAAATATATGGAAAACAATGTCCAATGTCAAGTGATACCATTTTAATAACTAAATCCT i manLeu1.NW_012104388v1 I 1 C 0 s colAng1.NW_012119221v1 1231859 181 + 1448899 -AAAATGTGTAATTCACAGATTACCATTGTTAAAATTGTGTGCCGTTTTGTATGCTACAAAAATAC-ACACATGT--TTTTATTGAAATCACATTAATCATAG--TTTATAGCTTGCTTTTGTCACTAACAAATATATGGAAAACAATGTCCAATGTCAAGTAATACCATTTTAATAACTAAATCCT i colAng1.NW_012119221v1 I 1 C 0 s calJac3.chr3 52975569 181 - 190850796 -AAAATGCATCATTCACAGATTACCATTGTTAAAATTGTGTGCCATTTTGTATGCTATAAAAATAC-ACACACAT--TTTTATTGAATTCATATTAATCATGG--TTTATAGCCTGCTTTTGTCACTAGAAAATACATGGAAAACAATGTCCAGTGTCAAGTGATACCATTTTAATAACTAAATCTT i calJac3.chr3 I 1 C 0 s saiBol1.JH378162 8137559 181 - 15139346 -AAAATGCATCATTCGCAGATTACCATTGTTAAAATTGTGTGCCATTTTGTATGCTATAAAAATAC-ACACACAT--TTTTATTGAAATCATATTAATCATGG--TTTATAGCCTGCTTTCGTTACTAGCAAATATATGGAAAACAATGTCCGATGTCAAGTGATACCATTTTAATAACTAAATCTT i saiBol1.JH378162 I 1 C 0 s cebCap1.NW_016107439v1 6919612 181 - 7304997 -AAAATGCATCATTCACAGATTACCATTGTTAAAATTGTGTGTCATTTTGTATGCTATAAAAATAC-ACATGCAT--TTTTATTGAAATCATATTAATCATAA--TTTATAGCCTACTTCTGTCACTAACAAATATATGGAAAACAATGTCCTATGTCAAATGATACCATTTTAATAACTAAATCTT i cebCap1.NW_016107439v1 I 1 C 0 s aotNan1.NW_018493494v1 9338044 181 - 11631747 -AAAATGCATCATTCGCAGATTACCACTGTTAAAATTGTGTGCCATTTTGTATGCTATAAAAATAC-ACACACAT--TTTTATTGAAATCATATTAATCATGG--TTTATAGCCTGCTTTTGTCACTAGCAAATATATGGAAAACAATGTCTAATGTCAAGTGATACCATTTTAATAACTAAATCTT i aotNan1.NW_018493494v1 I 94 C 0 s mm10.chr5 76390072 176 + 151834684 -AAGCCGCATAATTTACAGATAGTCATTTTCAAAA-------CCCATTTGTATGCTATAAAAACGCTATAGTAGT--TTTTATGGAAATCCTTTCAGCCATAACTTTTATAGCTTACTTT-ATTACTAACAAATCTATTGAGAAAGTTTTCTGATATGATGTGATACCATGTTAACAACTAAACCTT i mm10.chr5 C 0 C 0 s canFam3.chr13 47943350 184 + 63241923 -AAAATACATCATTACTAGATTATCGTTGTTAAAATTTTGTGCCATATACTATACTGTAAAAATGC-ATATATATACCTTTATTGAAAACATATTAGTCATAA-TTTTATAGACTGCTTTTATCACTAACAAATGTATTGAGAACAATTTCTAATGTGCAGCGATACCACTTTACTAATTAAATCTT i canFam3.chr13 I 3 C 0 s dasNov3.JH568349 4048372 173 - 5279953 AAAAAGACATCATTCACAGATTAC-----TTAAAATTTTGTTCCATTTTGTGTGAGATAAAAATAC-ACATATAT---TTTATTGAACTCATATTAATCATAG-TTTTATATACTGTTTTTGTGACTAA-AAATAT---GAGAACAATTCACAATGTGAAGTGATCTTACTTTCATAACTAAATCTT i dasNov3.JH568349 C 0 I 219 e otoGar3.GL873602 8581769 174 + 8790067 I a score=1553834.000000 s hg38.chr4_KI270787v1_alt 6273 126 + 111943 GAACACATCATCCAATGAAAAACAACAATCTAACTTATCAGGCTTC-A-T-TGTG-----------TTTTCCAGTGTGAGGAAG-----------TTACCAGATGGAGCTTTGAGCAAA----TGAAGGGTATGATGTCATTTATTT---AAGTGACA s panTro5.chr4 119568585 126 - 194502333 GAACACATCATCCAATGAAAAACAACAATCTAACTTTTCAGGCTTC-A-T-TGTG-----------TTTTCCAGTGTGAGGAAG-----------TTACCAGATGGAGCTTTGAGCAAA----TGAAGGGTATGATGTCATTTATTT---AAGTGACA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120984866 126 - 195804263 GAACACATCATCCAATGAAAAACAACAATCTAACTTATCAGGCTTC-A-T-TGTG-----------TTTTCCAGTGTGAGGAAG-----------TTACCAGATGGAGCTTTGAGCAAA----TGAAGGGTATGATGTCATTTATTT---AAGTGACA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4415951 126 - 17550833 GAACGCATCATCCAATGAAAAACAACGATCTAACTTATCAGGCTTC-A-T-TGTG-----------TTTTCCAGTGTGAGGAAG-----------TTACCAGATGGAGCTTTGAGCAAA----TGAAGGGTATGATGTCATTTATTT---AAGTGACA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291402 126 - 118206036 GAACACATCATCCAATGAAAAACAACGATCTAACTTATCAGGCTTC-A-T-TGTG-----------TTTTCCAGTGTGAGGCAG-----------TTACCAGATGGAGCTTTGAGCAAA----TGAAGGGTATGATGTCATTTATTT---AAGTGACA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111495126 126 - 190429646 GAACACATCATCCAATGAAAAACAACAATCTAATTTATCAGGCTTC-A-T-TGTG-----------TTTTCCAGTGTGAGGAAG-----------TTACCAGATGGAGCTTTGAGCAAA----TGAAGGGTATGATGTCATTTACTT---AAGTGACA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110663240 126 - 189454096 GAACACATCATCCAATGAAAAACAACAATCTAATTTATCAGGCTTC-A-T-TGTG-----------TTTTCCAGTGTGAGGAAG-----------TTACCAGATGGAGCTTTGAGCAAA----TGAAGGGTATGATGTCATTTACTT---AAGTGACA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13231025 126 + 26754465 GAACACATCATCCAATGAAAAACAACAATCTAATTTATCAGGCTTC-A-T-TGTG-----------TTTTCCAGTGTGAGGAAG-----------TTACCAGATGGAGCTTTGAGCAAA----TGAAGGGTATGATGTCATTTACTT---AAGTGACA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133350 126 - 5137665 GAACACATCATCCAATGAAAAACAACAATCTAATTTATCAGGCTTC-A-T-TGTG-----------TTTTCCAGTGTGAGGAAG-----------TTACCAGATGGAGCTTTGAGCAAA----TGAAGGGTATGATGTCATTTACTT---AAGTGACA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 40244 126 - 60632 GAACACATCATCCAATGAAAAACAACAATCTAATTTATCAGGCTTC-A-T-TGTG-----------TTTTCCAGTGTGAGGAAG-----------TTACCAGATGGAGCTTTGAGCAAA----TGAAGGGTATGATGTCATTTACTT---AAGTGACA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948582 126 + 2427316 GAACACATCATCCAATGAAAAACAACAATCTAATTTATCAGGGTTC-A-T-TGTG-----------TTTTCCAGTGTGAGGAAG-----------TTACCAGATGGAGCTTTGAGCAAA----TGAAGGGTATGATGTCATTTACTT---AAGTGACA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1232040 126 + 1448899 GAACACATCATCCAATGAAAAACAACAATCTAACTTATCAGGCTTC-A-T-TGTG-----------TTTTCCAGTGTGAGGAAG-----------TTACCAGATGGAGCTTTGAGCAAA----TGAAGGGTATGATGTCATTTACTT---AAGTGACA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52975750 137 - 190850796 GAACACATCATCCAATGAAAAACAATGATGTAACTTATCAGGCTTC-G-T-TGTG-----------TTTTCCAATGCAAGGAAAACATTCTGTGTTTTCCAGATGGAGCTTTGAGCAAA----TGAAGGGTATGATGtcatttattt---aagagaca i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8137740 126 - 15139346 AAACACATCATCCAATGAAAAACAATGATCTAACTTATCAGGCTTC-G-T-TGTG-----------TTTTCCAGTGCAAGGAAG-----------TTACCAGATGGAGCTTTGAGGAAA----TGAAGGGTATGATGTCATTTATTT---AAGTGACA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6919793 126 - 7304997 GAACATATCATCCAATGAAAAACAATGATCTAACTTATCAGGCTTT-G-T-TGTG-----------TTTTCTAGTGCAAGGAAG-----------TTACCAGATGGAGCTTTGAGCAAA----TGAAAGGTATGATGTCATTTATTT---AAGTGACA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9338225 126 - 11631747 GAACACATCATCCAATGAAAAACAATGATCTAACTTGTCAGGCTTC-G-T-TGTG-----------TTTTCCAGTGCAAGGAAG-----------TTACCAGATGGAGTTTTGAGCAAA----TGAAGGGTATGATGTCATTTATTT---AAGTGACA i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76390248 132 + 151834684 GAACCTGTCACTCAAAGAAAAGCAACATAATAAC-CGTCAGATTTC-A-TCTGTG-----------TTCT-TAATGAGATGAGA-----------TGATGGGATAGAGGTTTGAGCAAACAGTTGGGGGGTAGGGGGGCACAGTTTTAGAAAGTTACA i mm10.chr5 C 0 C 0 s canFam3.chr13 47943534 124 + 63241923 AAACACACAATTCAA-AAAAAACAACAATATGTCTTATCAAGTTTCAA-T-TATA-----------TTTTCCAGTATGAGGAAG-----------TTACCAGGTAGAGCTTTGGACAAG----TT-AGGGAGGGGCATCGTTTAGTT---AAGCAAA- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4048764 137 - 5279953 GAACACACCAGTCAATGTAAAACAACCATATAACTTATCAGGGTTC-AGT-TATGCATATGAATGCTGCTCCAGTGTGAGGACA-----------TTACCAGTGGGAATTTTGAGCAAA----TG-AGGGTGTGACATCATTTACTT---GAGCAACA i dasNov3.JH568349 I 219 C 0 e otoGar3.GL873602 8581769 174 + 8790067 I a score=158675.000000 s hg38.chr4_KI270787v1_alt 6399 21 + 111943 CAAAATAAATCCTGTGCCATG s panTro5.chr4 119568711 21 - 194502333 CAAAATAAATCCTGTGCCATG i panTro5.chr4 C 0 C 0 s panPan2.chr4 120984992 21 - 195804263 CAAAATAAATCCTGTGCCATG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4416077 21 - 17550833 CAAAATAAATCCTGTGCCATG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291528 21 - 118206036 CAAAATAAATCCTGTGCCCTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111495252 21 - 190429646 CAAAGTAAATCCTGTGCCCTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110663366 21 - 189454096 CAAAGTAAATCCTGTGCCCTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13231151 21 + 26754465 CAAAGTAAATCCTGTGCCCTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133476 21 - 5137665 CAAAATAAATCCTGTGCCCTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 40370 21 - 60632 CAAAATAAATCCTGTGCCCTG i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948708 21 + 2427316 CAAAATAAATCCTGTGCCCTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1232166 21 + 1448899 CAAAATAAATCCTGTGCCCTG i colAng1.NW_012119221v1 C 0 C 0 s mm10.chr5 76390380 21 + 151834684 TTAAATCAAGGCTGCGCCCTG i mm10.chr5 C 0 C 0 s canFam3.chr13 47943658 21 + 63241923 CTAAATAAACCCCATGCCTTG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4048901 21 - 5279953 TTAAATAACCCCCATGCCATG i dasNov3.JH568349 C 0 C 0 e aotNan1.NW_018493494v1 9338351 0 - 11631747 C e cebCap1.NW_016107439v1 6919919 0 - 7304997 C e saiBol1.JH378162 8137866 0 - 15139346 C e calJac3.chr3 52975887 0 - 190850796 C e otoGar3.GL873602 8581769 174 + 8790067 I a score=106275.000000 s hg38.chr4_KI270787v1_alt 6420 13 + 111943 ACCTCTATAGAGG s panTro5.chr4 119568732 13 - 194502333 ACCTCTATAGAGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 120985013 13 - 195804263 ACCTCTATAGAGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4416098 13 - 17550833 ACCTCTATAGAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291549 13 - 118206036 ACCTCTATAGAGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111495273 13 - 190429646 ACCTCTGTAGAGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110663387 13 - 189454096 ACCTCTGTAGAGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13231172 13 + 26754465 ACCTCTGTAGAGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133497 13 - 5137665 ACCTCTGTAGAGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 40391 13 - 60632 ACCTCTGTAGAGG i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948729 13 + 2427316 ACCTCTGTAGAGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1232187 13 + 1448899 ATCTCTATAGAGG i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8581943 13 + 8790067 ACCCAAATAAGAA i otoGar3.GL873602 I 174 C 0 s mm10.chr5 76390401 13 + 151834684 ATCTCTGTGGAGG i mm10.chr5 C 0 I 43 s canFam3.chr13 47943679 13 + 63241923 ACCCCTACAATGG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4048922 13 - 5279953 ACCTCCACAGAAG i dasNov3.JH568349 C 0 C 0 e aotNan1.NW_018493494v1 9338351 0 - 11631747 C e cebCap1.NW_016107439v1 6919919 0 - 7304997 C e saiBol1.JH378162 8137866 0 - 15139346 C e calJac3.chr3 52975887 0 - 190850796 C a score=317055.000000 s hg38.chr4_KI270787v1_alt 6433 49 + 111943 CACTTCTAAGAGCGTATTGAAATCACTTTCCAATTATATTTTTCAATCT s panTro5.chr4 119568745 49 - 194502333 CACTTCTAAGAGCGTATTGAAATCACTTTCCAATTATATTTTTCAATCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120985026 49 - 195804263 CACTTCTAAGAGCGTATTGAAATCACTTTCCAATTATATTTTTCAATCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4416111 49 - 17550833 CACTTCTAAGAGCGTATTGAAATAACTTTCCAATTATATTTTTCAATCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291562 49 - 118206036 CACTTCTAAGAGCGTATTGAAATAACTTTCCAATTATATTTTTCAATCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111495286 49 - 190429646 CACTTCTAAGAGTGTATTGAAATAACTTCACAATTACATTTTTCAATCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110663400 49 - 189454096 CACTTCTAAGAGTGTATTGAAATAACTTCACAATTACATTTTTCAATCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13231185 49 + 26754465 CACTTCTAAGAGTGTATTGAAATAACTTCACAATTACATTTTTCAATCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133510 49 - 5137665 CACTTCTAAGAGTGTATTGAAATAACTTCACAATTACATTTTTCAATCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 40404 49 - 60632 CACTTCTAAGAGTGTATTGAAATAACTTTACAATTACATTTTTCAATCT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948742 49 + 2427316 CACTTCTAAGAGTGTATTGAAATAACTTCACAATTACATTTTTCAATCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1232200 49 + 1448899 CACTTCTAAGAGTGTATTGAAATAACTTTACAATTACATTTTTCAATCT i colAng1.NW_012119221v1 C 0 I 4738 s otoGar3.GL873602 8581956 34 + 8790067 ATTTTCTGAAAAAACATTAAAA---------------ATGCATCAATCA i otoGar3.GL873602 C 0 I 1 s canFam3.chr13 47943692 48 + 63241923 CATTTCTAAGAGCATGCTGAAAT-ACGTTCTAATTGTGTTTTTCAATCT i canFam3.chr13 C 0 I 5 s dasNov3.JH568349 4048935 45 - 5279953 CTCTTCTCAA---GTACTGAAGTAACCTTGAAATAAC-CTTTCCACTGT i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76390414 43 + 151834684 I e aotNan1.NW_018493494v1 9338351 0 - 11631747 C e cebCap1.NW_016107439v1 6919919 0 - 7304997 C e saiBol1.JH378162 8137866 0 - 15139346 C e calJac3.chr3 52975887 0 - 190850796 C a score=128171.000000 s hg38.chr4_KI270787v1_alt 6482 19 + 111943 AAGTT----TTCTTGTTAAaaat s panTro5.chr4 119568794 19 - 194502333 AAGTT----TTCTTGTTAAaaat i panTro5.chr4 C 0 C 0 s panPan2.chr4 120985075 19 - 195804263 AAGTT----TTCTTGTTAAaaat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4416160 19 - 17550833 AAGTT----TTCTTGTTAAAAAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291611 19 - 118206036 AAGTT----TTCTTGTTAAAAAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111495335 19 - 190429646 AAGTT----TTCTTGTTAAAAAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110663449 19 - 189454096 AAGTT----TTCTTGTTAAAAAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13231234 19 + 26754465 AAGTT----TTCTTGTTAAAAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133559 19 - 5137665 AAGTT----TTCTTGTTAACAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 40453 19 - 60632 AAGTT----TTCTTGTTAAAAAT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948791 19 + 2427316 AAGTT----TTCTTGTTAAAAAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1236987 19 + 1448899 AAGTT----TTCTTATTAAAAAT i colAng1.NW_012119221v1 I 4738 C 0 s canFam3.chr13 47943745 19 + 63241923 AGGAC----TTTTCGTTAAAAAT i canFam3.chr13 I 5 C 0 s dasNov3.JH568349 4048980 21 - 5279953 --GCTTTCATTCTCTTTTAAAAT i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76390414 43 + 151834684 I e aotNan1.NW_018493494v1 9338351 0 - 11631747 C e cebCap1.NW_016107439v1 6919919 0 - 7304997 C e saiBol1.JH378162 8137866 0 - 15139346 C e calJac3.chr3 52975887 0 - 190850796 C e otoGar3.GL873602 8581990 1 + 8790067 I a score=663164.000000 s hg38.chr4_KI270787v1_alt 6501 103 + 111943 aaaaatgaggccaggcatggtggctcacgcctgtaatcctagcactttgggaggctgaagcgggtggactgcctgagttcaggagttcaagaccagcctgggc s panTro5.chr4 119568813 103 - 194502333 aaaaatgaggccaggcacggtggctcacgcctgtaatcctagcactttgggaggctgaagcgggtggactgcctgagctcaggagttcaagaccagcctgggc i panTro5.chr4 C 0 C 0 s panPan2.chr4 120985094 103 - 195804263 aaaaatgaggccaggcacggtggctcacgcctgtaatcctagcactttgggaggctgaagcgggtggactgcctgagctcaggagttcaagaccagcctgggc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4416179 103 - 17550833 AAAAATGAggtcaggcactgtggctcacgcctgtaatcctagcactttgggaggctgaagcgggtggactgcctgagctcaggagttcaagaccagcctgggc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291630 103 - 118206036 AAAAATGAggccaggcacggtggctcacgcctgtaatcctagcactttgggaggccgaagcgggtggactgcctgagctcatgagttcaagaccagcctgggc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111495354 103 - 190429646 AAAAATGAggccaggcacggtggctcacacctgtaatcctagcactttgggaggctgaggcaggtggactgcctgagctcaggagttcaagaccagcctgggc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110663468 103 - 189454096 AAAAATGAggccaggcacggtggctcacacctgtaatcctagcactttgggaggccgaggcaggtggactgcctgagctcaggagttcaagaccagcctgggc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13231253 103 + 26754465 AAAAATGAggccaggcacggtggctcacacctgtaatcctagcactttgggaggccgaggcaggtggactgcctgagctcaggaattcaagaccagcctgggc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133578 103 - 5137665 AAAAATGAggccaggcacggtggctcacacctgtaatcctagcactttgggaggccgaggcaggtggactgcctgagctcaggagttcaagaccagcctgggc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 40472 103 - 60632 AAAAATGAggccaggcacggtggctcacacctgtaatcctagcactttgggaggctgaggcaggtggactgcctgagctcaggagttcaagaccagcctgggc i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948810 103 + 2427316 AAAAATGAggccaggcacagtggctcacacctgtaatcctagcactttgggaggccgaggcaggtggactgcctgagctcaggagttcaagaccagcctgggc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1237006 103 + 1448899 AAAAATGAggccaggcacggtggctcacgcctgtaatcctagcactttgggaggcagaggcagatggactgcctgagctcaggagttcaagaccagcctgggc i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8581991 96 + 8790067 -------Aggccaggtgtgatgccttatacctgtaatcctagaactctgggaggccaaggagggtggattacctgggctcaggactttgagaccagactgagc i otoGar3.GL873602 I 1 C 0 s canFam3.chr13 47943764 15 + 63241923 AAAAATGA---------------------------------------------------------------CCCGAGC------------------------- i canFam3.chr13 C 0 C 0 e mm10.chr5 76390414 43 + 151834684 I e dasNov3.JH568349 4049001 0 - 5279953 C e aotNan1.NW_018493494v1 9338351 0 - 11631747 C e cebCap1.NW_016107439v1 6919919 0 - 7304997 C e saiBol1.JH378162 8137866 0 - 15139346 C e calJac3.chr3 52975887 0 - 190850796 C a score=95119.000000 s hg38.chr4_KI270787v1_alt 6604 17 + 111943 aacatggtgaaatccca s panTro5.chr4 119568916 17 - 194502333 aacatggtgaaatccca i panTro5.chr4 C 0 C 0 s panPan2.chr4 120985197 17 - 195804263 aacatggtgaaatccca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4416282 17 - 17550833 aacatggtgaaatccca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291733 17 - 118206036 aacacggtgaaatccta i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111495457 17 - 190429646 aacacagtgaaatccca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110663571 17 - 189454096 aacacagtgaaatccca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13231356 17 + 26754465 aacacagtgaaatccca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133681 17 - 5137665 aacacagtgaaatccca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 40575 17 - 60632 aacgcagtgaaatccca i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948913 17 + 2427316 aacacagtgaaatccca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1237109 17 + 1448899 aacacggtgaaatccca i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8582087 15 + 8790067 aaga--gcaagacccaa i otoGar3.GL873602 C 0 C 0 e mm10.chr5 76390414 43 + 151834684 I e dasNov3.JH568349 4049001 0 - 5279953 C e aotNan1.NW_018493494v1 9338351 0 - 11631747 C e cebCap1.NW_016107439v1 6919919 0 - 7304997 C e saiBol1.JH378162 8137866 0 - 15139346 C e calJac3.chr3 52975887 0 - 190850796 C e canFam3.chr13 47943779 0 + 63241923 C a score=591893.000000 s hg38.chr4_KI270787v1_alt 6621 97 + 111943 tctcaactaaaatacaaaaaattagctg-gcatggcagcatgtacctgtaatcctagctacttgggaggctgaggcaagagaattgctagaccctgg---------------------g s panTro5.chr4 119568933 97 - 194502333 tctcaactaaaatacaaaaaattagctg-gcatggcagcatgtacctgtaatcctagctacttgggaggctgaggcaagagaattgctagaccctgg---------------------g i panTro5.chr4 C 0 C 0 s panPan2.chr4 120985214 97 - 195804263 tctcaactaaaatacaaaaaattagctg-gcatggcagcatgtacctgtaatcctagctacttgggaggctgaggcaagagaattgctagaccctgg---------------------g i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4416299 97 - 17550833 tctcaactgaaatacaaaaaattagccg-gcatggcagcatgtacctgtaatcctagctacttgggaggctgaggcaagagaattgctagaccctgg---------------------g i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291750 97 - 118206036 tctcaactaaaatacaaaaaattagcca-gcgtggcagcacgtacctgtaatcccagctacttgggaggctgaggccggagaattgctagaacctgg---------------------a i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111495474 118 - 190429646 tctcaactaaaatacaaaaaattagcca-gcgtggcagcatgtacctgtaatcctagctacttgggaggctgaggcaggagaactgctagagcctgggaggcagaggttggagcctggg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110663588 118 - 189454096 tctcaactaaaatacaaaaaattagcca-gcgtggcagcatgtacctgtaatcctagctacttgggaggctgaggcaggagaactgctagagcctgggaggcagaggttggagcctggg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13231373 118 + 26754465 tctcaactaaaatacaaaaaattagcca-gcgtggcagcatgtacctgtaatcctagctacttgggaggctgaggcaggagaactgctagagcctgggaggcagaggttggagcctggg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133698 118 - 5137665 tctcaactaaaatacaaaaaattagcca-gcgtggcagcatgtacctgtaatcctagctacttgggaggctgaggcaggagaactgctagagcctgggaggcagaggttggagcctggg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 40592 118 - 60632 tctcaactaaaatacaaaaaattagcca-gcgtggcagcatgtacctgtaatcctagctacttgggaggctgaggcaggagaactgctagagcctgggaggcagaggttggagcctgag i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1948930 118 + 2427316 tctcaactaaaatacaaaaaattagcca-gcgtggcagcatgtacctgtaatcctagctacttgggaggctgaggcaggagaactgctagagcctgggaggcagaggttggagcctggg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1237126 118 + 1448899 tctcaactaaaatacaaaaaattagcca-gcgtggcagcatgtacctgtaatcctagctacttgggagactgaggcaggagaactgctagagcctgggaggcagaggttggagcctggg i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8582102 94 + 8790067 tctctactaaaaacagaaaaactagccaggtgttgtagtgggcatctgtagtcc-agctactcaggaggctgaggcagg---attgcttgagcccGAG--------------------- i otoGar3.GL873602 C 0 I 249 s dasNov3.JH568349 4049001 36 - 5279953 TTTTCACTAAGAT--GAAAAACTAGCTG-AGGCG---------------------------TTGGG----------------------------------------------------- i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76390414 43 + 151834684 I e aotNan1.NW_018493494v1 9338351 0 - 11631747 C e cebCap1.NW_016107439v1 6919919 0 - 7304997 C e saiBol1.JH378162 8137866 0 - 15139346 C e calJac3.chr3 52975887 0 - 190850796 C e canFam3.chr13 47943779 0 + 63241923 C a score=70939.000000 s hg38.chr4_KI270787v1_alt 6718 12 + 111943 aggcggaggttg s panTro5.chr4 119569030 12 - 194502333 aggcggaggttg i panTro5.chr4 C 0 C 0 s panPan2.chr4 120985311 12 - 195804263 aggcggaggttg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4416396 12 - 17550833 aggtggaggttg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291847 12 - 118206036 aggcagaggttg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111495592 12 - 190429646 aggcagaggttg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110663706 12 - 189454096 aggcagaggttg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13231491 12 + 26754465 aggcagaggttg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133816 12 - 5137665 aggcagaggttg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 40710 12 - 60632 aggcagaggttg i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1949048 12 + 2427316 aggcagaggttg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1237244 12 + 1448899 aggcagaggttg i colAng1.NW_012119221v1 C 0 C 0 e mm10.chr5 76390414 43 + 151834684 I e dasNov3.JH568349 4049037 0 - 5279953 C e aotNan1.NW_018493494v1 9338351 0 - 11631747 C e cebCap1.NW_016107439v1 6919919 0 - 7304997 C e saiBol1.JH378162 8137866 0 - 15139346 C e calJac3.chr3 52975887 0 - 190850796 C e otoGar3.GL873602 8582196 249 + 8790067 I e canFam3.chr13 47943779 0 + 63241923 C a score=777191.000000 s hg38.chr4_KI270787v1_alt 6730 165 + 111943 cagtgagtggagatcacgccactgcactccagcctcggtgactgagcaagactctgtctctaaaaaaaataaattaaattaaataaataaatatataTGAGTTGAGCCAGTGGTTCTACTTCCCTTTGTCAGGTGGGGTGCCAAGAACTTGGCCTGGTACTCATT s panTro5.chr4 119569042 165 - 194502333 cagtgagtggagatcacgccactgcactccagcctcggtgactgagcaagactctgtctctaaaaaaaataaattaaattaaataaataaatatataTGAGTTGAGCCAGTGGTTCTACTTCCCTTTGTCAGGTGGGGTGCCAAGAACTTGGCCTGGTACTCATT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120985323 165 - 195804263 cagtgagtggagatcacgccactgcactccagcctcggtgactgagcaagactctgtctctaaaaaaaataaattaaattaaataaataaatatataTGAGTTGAGCCAGTGGTTCTACTTCCCTTTGTCAGGTGGGGTGCCAAGAACTTGGCCTGGTACTCATT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4416408 165 - 17550833 cagtgagtggtgatcatgccactgcactccagcctcggtgactgagcaagactctgtctctaaaaaaaataaaTTAAATTAAATAAAGAAATATATATGAGTTGAGCCAGTGGTTCTACTTCCCATTGTCAGGTGGGGTGCCAAGAACTTGGCCTGGTACTCATT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69291859 165 - 118206036 cagtgagtggagatcacgccactgcactccagcctcggtgactgagcaagactctgtctctaaaaaaaataaattaaataaaataaaTACATATAAATGAGTTGAGCCAGTGGTTCTACTTCCCTTTGTCAGGTGGGGTGCCAAGAACTTGGCCTGGTACTCATT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111495604 146 - 190429646 cagtgagcggaaatcatgccactgcactccagcctgggtgactgagcaagaatctgtctc-------------------taaataaataaagaaagaaGAGCTGAGCCAATGGTTCTACTTCCCTTTGTCAGGTGGGGTGCCAAGAGCTTGGCCTGGTACTCATT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110663718 146 - 189454096 cagtgagcggaaatcatgccactgcactccagcctgggtgactgagcaagaatctgtctc-------------------taaataaataaagaaagaaGAGCTGAGCCAATGGTTCTACTTCCCTTTGTCAGGTGGGGTGCCAAGAGCTTGGCCTGGTACTCATT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13231503 146 + 26754465 cagtgagcggaaatcatgccactgcactccagcctgggtgactgagcaagaatctgtctc-------------------taaataaataaagaaagaaGAGCTGAGCCAATGGTTCTACTTCCCTTTGTCAGGTGGGGTGCCAAGAGCTTGGCCTGGTACTCATT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133828 150 - 5137665 cagtgagcggaaatcatgccactgcactccagcctgggtgactgagcaagaatctgtctctaaa---------------taaataaataaataaaTAAGAGCTGAGCCAATGGTTCTACTTCCCTTTGTCAGGTGGGGTGCCAAGAGCTTGGCCTGGTACTCATT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 40722 150 - 60632 cagtgagcagaaatcatgccactgcactccagcctgggtgactgagcaagaatccatctctaaa---------------taaataaataaataaaTAAGAGCTGAGCCAATGGTTCTACTTCCCTTTGTCAGGTGGGGTGCCAAGAGCTTGGCCTGGTACTCATT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1949060 146 + 2427316 cagtgagcggaaatcatgccactgcactccagcctgggtgactgagcaagaatctgtctc-------------------taaataaataaataaaTAAGAGCTGAGCCAATGGTTCTACTTCCCTTTGTCAGGTGGGGTGCCAAGAGCTTGGCCTGGTACTCATT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1237256 146 + 1448899 cagtgagcggaaatcatgccactgcactccagcctgggtgactgagcaagaatccgtctc-------------------taaataaataaataaaTAAGAGCTGAGCCAATGGTTCTACTTCCCTTTGTCAGGTGGGGTGCCAAGAGCTTGGCCTGGTACTCATT i colAng1.NW_012119221v1 C 0 C 0 s canFam3.chr13 47943779 58 + 63241923 CAGTGAG-----------------------------------------------------------------------------------------------------------TCTGCTTCATATCTTCATTTGCTGAGCTAAGAGTCTGGCCTTATACTCATT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4049037 48 - 5279953 ------------------------------------------------------------------------------------------------------------------GCTGCTTCATCTCAGCAATT---GCACCAAGAGTCTGGACTTGTAAACTTT i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76390414 43 + 151834684 I e aotNan1.NW_018493494v1 9338351 0 - 11631747 C e cebCap1.NW_016107439v1 6919919 0 - 7304997 C e saiBol1.JH378162 8137866 0 - 15139346 C e calJac3.chr3 52975887 0 - 190850796 C e otoGar3.GL873602 8582196 249 + 8790067 I a score=210154.000000 s hg38.chr4_KI270787v1_alt 6895 24 + 111943 CCACACTTGCTGCTTGACCAGGTG s panTro5.chr4 119569207 24 - 194502333 CCACACTTGCTGCTTGACCAGGTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 120985488 24 - 195804263 CCACACTTGCTGCTTGACCAGGTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4416573 24 - 17550833 CCACACTTGCTGCTTGACCAGGTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69292024 24 - 118206036 CCACACTTGCTGCTTGACCAGGGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111495750 24 - 190429646 CCACACTTGCTGCTTGACCAGGTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110663864 24 - 189454096 CCACACTTGCTGCTTGACCAGGTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13231649 24 + 26754465 CCACACTCGCTGCTTGACCAGGTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4133978 24 - 5137665 CCACACTTGCTGCTTGACCAGGTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 40872 24 - 60632 CCACACTTGCTGCTTGACCAGGTG i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1949206 24 + 2427316 CCACACTTGCTGCTTGACCAGGTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1237402 24 + 1448899 CCACACTTGCTGCTTGACCAGGTG i colAng1.NW_012119221v1 C 0 C 0 s mm10.chr5 76390457 24 + 151834684 CCATGCTCGATGCCCGGCCAGGTG i mm10.chr5 I 43 C 0 s canFam3.chr13 47943837 24 + 63241923 CCATACTTATTTCTTGACCAGGTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4049085 24 - 5279953 CCACATTTGCTGCCTGGCCAGGTG i dasNov3.JH568349 C 0 C 0 e aotNan1.NW_018493494v1 9338351 0 - 11631747 C e cebCap1.NW_016107439v1 6919919 0 - 7304997 C e saiBol1.JH378162 8137866 0 - 15139346 C e calJac3.chr3 52975887 0 - 190850796 C e otoGar3.GL873602 8582196 249 + 8790067 I a score=3697537.000000 s hg38.chr4_KI270787v1_alt 6919 333 + 111943 CTTACTGATGGCCTCCCCTATGGGGTAGGCACACACC----AGCTCTAAAGCCCTTCTCCTGAATCCAGTGCTGGCTTCTGCTAGAAACAACTTCTTGGGAATGAAAATGCATTTCGTTCCTTCACTAATCTAGAAGAGA-GAATAAACATTTTGATATTTATTTTGAGAGATTTTTAGTTGCTTAATGCATAAAG-----GTAATGTA------GGTCAAACATGGATTTG--AGAGTTCATATGTCTCATTAGGC---------CCACCCCAGTGCCTAATGAATCAACATGGATGTGATGT--ATATAAGAGGAGTGGCAGACTAGTCTACCCAATCTGGGAACCAGGATGGCAACTGT s panTro5.chr4 119569231 333 - 194502333 CTTACTGATGGCCTCCCCTATGGGGTAGGCACACACC----AGCTCTAAAGCCCTTCTCCTGAATCCAGTGCTGGCTTCTGCTAGAAACAACTTCTTGGGAATGAAAATGCATTTCGTTCCTTCACTAATCTAGAAGAGA-GAATAAACATTTTGATATTTATTTTGAGAGATTTTTAGTTGCTTAATGCATAAAG-----GTAATGTA------GGTCAAACATGGATTTG--AGAGTTCATATGTCTCATTAGGC---------CCACCCCAGTGCCTAATGAATCAACATGGATGTGATGT--ATATAAGAGGAGTGGCTGACTAGTCTACCCAATCTGGGAACCAGGATGGCAACTGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120985512 333 - 195804263 CTTACTGATGGCCTCCCCTATGGGGTAGGCACACACC----AGCTCTAAAGCCCTTCTCCTGAATCCAGTGCTGGCTTCTGCTAGAAACAACTTCTTGGGAATGAAAATGCATTTCGTTCCTTCACTAATCTAGAAGAGA-GAATAAACATTTTGATATTTATTTTGAGAGATTTTTAGTTGCTTAATGCATAAAG-----GTAATGTA------GGTCAAACATGGATTTG--AGAGTTCATATGTCTCATTAGGC---------CCACCCCAGTGCCTAATGAATCAACATGGATGTGATGT--ATATAAGAGGAGTGGCTGACTAGTCTACCCAATCTGGGAACCAGGATGGCAACTGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4416597 333 - 17550833 CTTACTGATGGCCTCCCGTATGGGGTAGGCACACACC----AGCTCTAAAGCCCTTCTCCTGAATCCAGTGCTGGCTTCTGCTAGAAACAACTTCTTGGGAATGAAAATGCATTTCGTTCCTTCACTAATCTAGAAGAGA-GAATAAACATTTTGATATTTATTTTGAGAGATTTTTAGTTGCTTAATGCATAAAG-----GTAATGTG------GGTCAAACATGGATTTG--AGAGTTCATATGTCTCATTAGGC---------CCACCCCAGTGCCTAATGAATCAACGTGGATGTGATGT--ATACAAGAGGAGTGGCTGACTAGTCTACCCAATCTGGGAACCAGGATGGCAACTGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69292048 329 - 118206036 CTTACTAATGGCCTCCCGTATGGGATAGGCACACACC----AGCTCTAAAGCCCTTCTCCTCAATCCAGTGCTGGCTTCTGCTAGAAACAAGTTCTTGGGAATGAAAATGCATTTCGTTCCTTCACTTATCTAGAAGAGA-GAATAAACATTTTGATATTTATTTTGAGAGATTTTTAGTTGCTTAATGCATAAAG-----GTAATGTA------GGTCAAACATGGATTTG--AGAGTTCATATGTCTCC----AC---------CCACCCAAGGGCCTAATGAATCAACATGGATGTGATGT--ATATAAGAGGAGTGGCTGACTGGTCTACCCAATCTGGGAACCAAGATGGCAACTGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111495774 330 - 190429646 CTTACTAACGGCCTCCCGTGTGGG-TAGGCACACACC----AGCTCTAAAGCCCTTCTCCTGAATCCAGTGCTGGCTTCTGCTAGAAACAAGTTCTTGGGAATAAAAATGAATTTCGTTCCTTCACTAATATAGAAGAGA-GAATAAACATTTTGATATTTATTTTGAGAGATTTTTAGTTGCTTAATGCATAAAG-----GTAATGCA------GGTCAAACATGGTTTTGAAAGAGTTCATATGTCTCC----AC---------CCACCCAAGGGCCTAATGAATCAACGTGGATGTGATGT--ATATAAGAGGAGTGGCTTACTGGTCTACCCAATCTAGGAACCAGGATGGCAACTGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110663888 330 - 189454096 CTTACTAACGGCCTCCCGTGTGGG-TAGGCACACACC----AGCTCTAAAGCCCTTCTCCTGAATCCAGTGCTGGCTTCTGCTAGAAACAAGTTCTTGGGAATAAAAATGAATTTCGTTCCTTCACTAATATAGAAGAGA-GAATAAACATTTTGATATTTATTTTGAGAGATTTTTAGTTGCTTAATGCATAAAG-----GTAATGCA------GGTCAAACATGGTTTTGAAAGAGTTCATATGTCTCC----AC---------CCACCCAAGGGCCTAATGAATCAACGTGGATGTGATGT--ATATAAGAGGAGTGGCTTACTGGTCTACCCAATCTAGGAACCAGGATGGCAACTGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13231673 330 + 26754465 CTTACTAACGGCCTCCCGTGTGGG-TAGGCACACACC----AGCTCTAAAGCCCTTCTCCTGAATCCAGTGCTGGCTTCTGCTAGAAACAAGTTCTTGGGAATAAAAATGAATTTCATTCCTTCACTAATATAGAAGAGA-GAATAAACATTTTGATATTTATTTTGAGAGATTTTTAGTTGCTTAATGCATAAAG-----GTAATGCA------GGTCAAACATGGTTTTGAAAGAGTTCATATGTCTCC----AC---------CCACCCAAGGGCCTAATGAATCAACATGGATGTGATGT--ATATAAGAGGAGTGGCTTACTGGTCTACCCAATCTAGGAACCAGGATGGCAACTGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4134002 330 - 5137665 CTTACTAACGGCCTCCCGTGTGGG-TAGGCACACACC----AGCTCTAAAGCCCTTCTCCTGAATCCAGTGCTGGCTTCTGCTAGAAACAAGTTCTTGGGAATAAAAATGAATTTCGTTCCTTCACTAATATAGAAGAGA-GAATAAACATTTTGATATTTATTTTGAGAGATTTTTAGTTGCTTAATGCATAAAG-----GTAATGCA------GGTCAAACATGGTTTTGAAAGAGTTCATATGTCTCC----AC---------CCACCCAAGGGCCTAATGAATCAACATGGATGTGATGT--ATATAAGAGGAGTGGCTTACTGGTCTACCCAATCTAGGAACCAGGATGGCAACTGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 40896 330 - 60632 CTTACTAACGGCCTCCCGTGTAGG-TAGGCGCACACC----AGCTCTAAAGCCCTTCTCCTGAATCCAGTGCTGGCTTCTACTAGAAACAAGTTCTTGGGAATAAAAATGAATTTCGTTCCTTCACTAATATAGAAGAGA-GAATAAACATTTTGATATTTATTTTGAGAGATTTTTAGTTGCTTAATGCATAAAG-----GTAATGCA------GGTCAAACATGGTTTTGAAAGAGTTCATATGTCTCC----AC---------CCACCCAAGGGCCTAATGAATCAACATGGACGTGATGT--ATATAAGAGGAGTGGCTTACTGGTCTACCCAATCTAGGAACCAGGATGGCAACTGT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1949230 330 + 2427316 CTTACTAACGGCCTCCCGTGTGGG-TAGGCACACACC----AGCTCTAAAGCCCTTCTCCTGAATCCAGTGCTGGCTTCTGCTAGAAACAAGTTCTTGGGAATAAAAATGAATTTCGTTCCTTCACTAATATAGAAGAGA-GAATAAACATTTTGATATTTATTTTGAGAGATTTTTAGTTGCTTAATGCATAAAG-----GTAATGCA------GGTCAAACATGGTTTTGAAAGAGTTCATATGTCTCC----AC---------CCACCCAAGGGCCTAATGAATCAACATGGATGTGATGT--ATATAAGAGGAGTGGCTTACTGGTCTACCCAATCTAGGAACCAGGATGGCAACTGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1237426 330 + 1448899 CTTACTAACGGCCTCCCGTGTGGG-TAGGCACACACC----AGTTCTAAAGCCCTTCTCCTGAATCCAGTGCTGGCTTCTGCTAGAAACAAGTTCTTGGGAATAAAAATACATTTTGTTCCTTCACTAATCTAGAAGAGA-GAATAAACATTTTGATATTTATTTTGAGAGATTTTTAGTTGCTTAATGTGTAAAG-----GTAATGCA------GGTCAAACATGGATTTGAAAGAGTTCATATGTCTCC----AC---------CCACCCAAGGGCCTAATGAATCAACATGGATGTGATGT--Atataagaggagtggcttactggtctacccaatctgggaaccaggatggcaactgt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52975887 335 - 190850796 cttactaatggcctcctgtgtgGAGTAGGCACACACCTAAAGGCCCTAAAGCCCTTCTCCTGAATCTAGTGCTGGCTTCTGCTAGAAACAAGTTCTTGGGAATAAAAATCCATTCAGTTCCTTCACTAATCTTGTAGGGA-GAATAAACATTTTTATATTTATTTTGAGAGATTTTTATTTGCTTAATGTAAAAAG-----GTAATGCA------GGTCAAACATGGACTTGAACGTGTTCGTATGTCTCC----AA---------GCACCCAAGGGCCTGATGAATCTACATGGTTGTAATGT--ATGTAAGAGGAGTAGCTGACTGGTCTGCCCAGTCTGGGACCCAGGATGGCAACTGT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8137866 335 - 15139346 CTTACTAATGGCCTCCCGTGTGGAGTAGGCACACACCTAAAAGCCCTAAAGCCCTTCTCCTGAATCTAGTGCTGGCTTTTGCTAGAAACAAGTTCTTGGGAATAAAAATCCATTCAGTTCCTTCACTAATCTCGTAGAGA-GAATAAACATTTTGATATTTACTTTGAGAGATTTTTAGTTGCTTAATGTATAAAG-----GTAATGTA------GGTCAAACATGGACTTGAAAATGTTCGTATGTCTCC----AT---------GCACCCAAGGGCCTAATGAATGTACATGGTTGTAATGT--GTGTAAGAGGAGTAGCTGACTGGTCTGCCCAATCTGGGAACCAGGATGGCAACTGT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6919919 331 - 7304997 CTTACTAATGGCCTCCTGTGTGGAGTAGGCACACACC----AGTTCTAAAGCCCTTCTCCTGAATCCAGTGCTGGCTTCTGCTAGAAACAAGTTCTTGGGAATAAAAATCCATTCAGTTCCTTCACTAATCTAGTAGAGA-GAAGAAGTATTTTTATATTTATTTTGAGATATTTTTAGTTGCTTAATGTATAAAG-----GTAATGTA------GGTCAAACATGGACTTGAAAGTGTTCATATGTCTCC----AT---------GCACCCAAGGGCCTAATGAATCTACATGGTTGTAATGT--Atgtaagaggagtagctgactggtctacccaatctgggaaccaggatggcaactgt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9338351 335 - 11631747 CTTACTAATGGCCTCCCGTGTGGAGTAGGCACACACCTAAAAGCCCTAAAGCCCTTCTCCTGAATCTAGTGCTGGCTTCTGCTAGAAACAAGTTCTTGGGAATAAAAATCCATTCAGTTCCTTCACTAATCTCGTAGAGA-GAATAAACATTTTTATATTTATTTTGAGAGATTTTTAGTTGCTTAATGTAAAAAG-----GTAATGTA------GGTCAAACATAGACTTGAAAGTGTTCGTATGTCTCC----AC---------GCACCCAAGGGCCTAATGAATCTACATGTTTGTAATGT--GTGTAAGAGGAGTAGCTGACTCGTCTGCCCAATCTGGGAACCAGGATGGCAACTGT i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76390481 267 + 151834684 CTTCCAAGTGGCCTCCTCAGCAGGATAAGCTCTGAGC----ATCTCTAAGAGC--TCTCCTGGA-----------------------------TCTGGGATATAAAAATGCTGCTTGATCCTTCTCTGATCTAGAAGAAA-GAATACA----------------------------GAGTCATTTAATGCATAAGGAAAACGCACTGCA------GGGCA------GAGCTGAAGAGGTCAATCTTCCCCG----AG---------CCACAAAAGGCTCTAAGCTATCAACATGCATGGACTCT--GTAGAAAGAGTACTACTGGCTGGT---CCCAATCTGGGAACCCAGGCAGCGACTG- i mm10.chr5 C 0 C 0 s canFam3.chr13 47943861 306 + 63241923 CTCCCTAATGGCCACCTCTGTGGG-TACGTACATACC----AGCTCTAAAGCAGTTCTCCTGAATC-AGTACTGGCTTTCACTAGAAACAAATTTGGGGGAATAAAAATGCATTCTAATC---CACTAATGTAGATGAGAGGAATAAATACAGGGAT-------------GATGTTTAGTTGTTTAATTCACAAAG-----GAAATATATTTGAGGATCAAACATAATTTTA-AAGGATTAGTATGCCCCT---------------TAATCCAAGTGTCTAATCAATCAACATGGATGTGCTGG--GTACA-----------TGACTGGTCTACCCAATCTGGGAACCAGGATGGCAAGTGT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4049109 329 - 5279953 CTCCCT--CAGCCTTCTCTGTGAGGTGGGCAAACAAC----AGCCCAAGAGCA-TTCCCCAGGTTTCAGGGCAGGCTTCTGCTAGAAACATTTTTTGGGGAATAACAATGCATTCATCTCCTTCACTGATCTAGAAGAAA-GAATAAAAAC----------------AGGCATGTTTGGTTGTTGAATGCACAGAG-----GAAATGCAGGGCAGGGTCCAACAAGGGTCTGGAAGAGTTAATGAGCCCCA----TCCTCCACCCGCCACCCCCAGGCCTAATCAATCAACCTCGAAGTGCTGTGCACATATGAGCGGCTGCTTACTTGTCTACCCAATCTAGCAATGAGGATGGTGACTGT i dasNov3.JH568349 C 0 I 104 e otoGar3.GL873602 8582196 249 + 8790067 I a score=1931603.000000 s hg38.chr4_KI270787v1_alt 7252 185 + 111943 GAA-GTCATTTGGGTCCATTATGTCCTAACA---TCCCTCCTAACAA----AT-----AAAACATTCTGCATAAAG------ACTAT-----AAAAGGATTAGTCTAG-AAA--ATATGAGCCCTAATGGGGACAAATGATACACAGTTAAACTATAAGATAGTATAAGATAGGTAGTTATTTAACAATTGGCAGGTAACCTGGAATATGGT s panTro5.chr4 119569564 185 - 194502333 GAA-GTCATTTGGGTCCATTATGTCCTAACA---TCCCTCCTAACAA----AT-----AAAACATTCTGCATAAAG------ACTAT-----AAAAGGATTAGTCTAG-AAA--ATATGAGCCCTAATGGGGACAAATGATACACAGTTAAACTATAAGATAGTATAAGATAGGTAGTTATTTAACAATTGGCAGGTAACCTGGAATATGGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 120985845 185 - 195804263 GAA-GTCATTTGGGTCCATTATGTCCTAACA---TCCCTCCTAACAA----AT-----AAAACATTCTGCATAAAG------ACTAT-----AAAAGGATTAGTCTAG-AAA--ATATGAGCCCTAATGGGGACAAATGATACACAGTTAAACTATAAGATAGTATAAGATAGGTAGTTATTTAACAATTGGCAGGTAACCTGGAATATGGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4416930 185 - 17550833 GAA-GTCATTTGGGTCCATTATGTCCTAACA---TCCCTCCTAACAA----AT-----AAAACATTCTGCATAAAG------ACTAT-----AAAAAGATTAGTCTAG-AAA--ATATGAGCCCTAATGGGGACAAATGATACACAGTTAAACTATAAGATAGTATAAGATAGGTAGTTATTTAACGATTGGCAGGTAACCTGGAATATGGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69292377 175 - 118206036 GAA-GTCATTTGGGTCCATTATGTCCTAACA---TCCTTCCTAACAA----AT-----AAGACATTCTGCATAAGG------ACTAT-----AAAAGGATTAGTCTAG-AAA--ATATGAGCCCTAATGGGGACAAATGAAACACAGTTAAAC----------TATAAGATAGGTAGTTATTTAACAATTGGCAGGTAACCTGGAATATGGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111496104 175 - 190429646 GAA-GTCATTTGGGTCCATTATGTCCTAACA---TCCCTCCTAACAA----AT-----AAGACATTCTGCATAAGG------ACTGT-----AAAAGGATTAGTCTAG-AAA--ATATGAGCCCTAATGGGGACAAATGATACACAGTTAAAC----------TATAAGATAGGTAGTTATTTAACAATTGGCAGGTAATCTGGAATATGGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110664218 175 - 189454096 GAA-GTCATTTGGGTCCATTATGTCCTAACA---TCCCTCCTAACAA----AT-----AAGACATTCTGCATAAGG------ACTGT-----AAAAGGATTAGTCTAG-AAA--ATATGAGCCCTAATGGGGACAAATGATACACAGTTAAAC----------TATAAGATAGGTAGTTATTTAACAATTGGCAGGTAATCTGGAATATGGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13232003 175 + 26754465 GAA-GTCATTTGGGTCCATTATGTCCTAACA---TCCCTCCTAACAA----AT-----AAGACATTCTGCATAAGG------ACTGT-----AAAAGGATTAGTCTAG-AAA--ATATGAGCCCTAATGGGGACAAATGATACACAGTTAAAC----------TATAAGATAGGTAGTTATTTAACAATTGGCAGGTAATCTGGAATATGGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4134332 175 - 5137665 GAA-GTCATTTGGGTCCATTATGTCCTAACA---TCCCTCCTAACAA----AT-----AAGACATTCTGCATAAGG------ACTGT-----AAAAGGATTAGTCTAG-AAA--ATATGAGCCCTAATGGGGACAAATGATACACAGTTAAAC----------TATAAGATAGGTAGTTATTTAACAATTGGCAGGTAATCTGGAATATGGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 41226 175 - 60632 GAA-GTCATTTGGGTCCATTATGTCCTAACA---TCCCTCCTAACAC----AT-----AAGACATTCTGCATAAGC------ACTGT-----AAAAGGATTAGTCTAG-AAA--ATATGAGCCCTAATGGGGACAAATGATACACAGGTAAAC----------TATAAGATAGGTAGTTATTTAACAACTGGCAGGTAATCTGGAATATGGG i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1949560 175 + 2427316 GAA-GTCATTTGGGTCCATTATGTCCTAACA---TCCCTCCTAACAA----AT-----AAGACATTCTGCATAAGG------ACTGT-----AAAAGGATTAGTCTAG-AAA--ATATGAGCCCTAATGGGGACAAATGATACACAGTTAAAC----------TATAAGATAGGTAGTTATTTAACAATTGGCAGGTAATCTGGAATATGGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1237756 171 + 1448899 gaa-gtcatttgggtccattatgtcctaacc---tccctcctaacaa----at-----aagacattctgcgtaagg------actat-----aaaaggattagtctag-aga--atacgagccctaatggggacaaatgatacacagttaaac----------tataagatagg----tatttaacaattggcaggtaatctggaatatggg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52976222 176 - 190850796 GAA-GCCATTCAGGTCTATTTTGTCCTAACA---TCCCTCCTAACAA----ATA----AAGAGATTCTTCATAAAG------ACCAT-----AAAAGGATTAGTCTAG-AAA--ATATGAGCCTTAATGGGGATAAATGATACACAGTTAAAG----------TGTAAGATAGGTAGTTATTTAACAATTGGCAGGTAAGCTGGAGTATGGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8138201 176 - 15139346 GAA-GCCATTCGGGTCTATTTTGCCCTTACG---TCCCTCCTATCAA----AT-----AAGAGATTCTTCATAAAG------ACTAT-----AAAATGATTAGTCTAGAAAA--ATATGAGCCTTAATGGGGACAAATGACACACAGTTAAAG----------CATAAGATAGGTAGTTATTTAACAATTGGCAGGGAAACTGGAGTATGGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6920250 175 - 7304997 gaa-gccattcgggtctattttgtcctaaca---tccctcctaacaa----at-----aggagattcttcataaag------actat-----aaaaggattagtctag-aaA--ACATGAGCCTTAATGAGGACAAATGATACACAGTTAAAG----------TATAAGATAGGTAGTTATTTAACAACTAGCAGGGAAGCTGGAGTATGGG i cebCap1.NW_016107439v1 C 0 I 309 s aotNan1.NW_018493494v1 9338686 176 - 11631747 GAA-GCCATTCGGGTCTATTTTGTCCTAACG---TCCCTCCTAACAA----ATA----AAGAGATTCTTCATAAAG------ACTAT-----AAAAGGATTAGTCTAG-AAA--ATATGAGCCTTAATGGGGATAAATGATACACAGTTAAAG----------TATAAGATAGGTAGTTATTTAACAATTGGCAGGTAAGCTGGAGTATGGG i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76390748 157 + 151834684 --A-ATGACTCTGGTCC-TTGGGTTCCAGTGTTCTCCTTGCTGATGT----ATT----AAGAGATTCTGTGGAAGA------ACCAA-----GATGAGTTTCTTTCAG-AAA--TTGTGAAGCCAAATGGGT-CAGACCATACACAGTTTACA----------TATATG--------TTACTT----------AGGTGACACGGACTGTGGG i mm10.chr5 C 0 C 0 s canFam3.chr13 47944167 182 + 63241923 AAAGGTCATTTGGGTCCATCTAGTACTGACA---TCCCCCTTACCAGTATCTT-----AAGGGAATCTGCA-GAAG------ACTATCTATGAAAGGGATTAGTTAAG-AAA--ATACAAACTCTAAATGGGATAAACCATACACAACTCA------------TATAAGATAGGTAGTTAAATGACAGTTTTCAATGAGCATAGAGTGTGGG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4049542 167 - 5279953 AAA-GTCATTTGGGTCCATCAAGTCTCAGCA---TTCTTCCTTAAAA----ATTCCTGAAGGGGTTCTGCATGAGGATGAAAATTAT-----AAAAGGATCAGTTAAA-AAAATATATGAGCCCTGAATAAGACACAGTATGGACCGTTTAGG----------TATACGGTAGTTAGCTATATAACAATTT--------------------- i dasNov3.JH568349 I 104 C 0 e otoGar3.GL873602 8582196 249 + 8790067 I a score=41914.000000 s hg38.chr4_KI270787v1_alt 7437 5 + 111943 TCTGA s panTro5.chr4 119569749 5 - 194502333 TCTGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120986030 5 - 195804263 TCTGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4417115 5 - 17550833 CCTGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69292552 5 - 118206036 TCTGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111496279 5 - 190429646 TGTGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110664393 5 - 189454096 TGTGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13232178 5 + 26754465 TGTGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4134507 5 - 5137665 TGTGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 41401 5 - 60632 TGTGA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1949735 5 + 2427316 TGTGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1237927 5 + 1448899 tctga i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52976398 5 - 190850796 TCTGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8138377 5 - 15139346 TCTGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6920734 5 - 7304997 TCTGA i cebCap1.NW_016107439v1 I 309 C 0 s aotNan1.NW_018493494v1 9338862 5 - 11631747 TCTGA i aotNan1.NW_018493494v1 C 0 I 312 s mm10.chr5 76390905 4 + 151834684 TCTC- i mm10.chr5 C 0 C 0 s canFam3.chr13 47944349 5 + 63241923 TCTGA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4049709 5 - 5279953 CCAGA i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8582196 249 + 8790067 I a score=114895.000000 s hg38.chr4_KI270787v1_alt 7442 8 + 111943 TGTTAACT s panTro5.chr4 119569754 8 - 194502333 TGTTAACT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120986035 8 - 195804263 TGTTAACT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4417120 8 - 17550833 TGTTAACG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69292557 8 - 118206036 TGTTAACT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111496284 8 - 190429646 TGTTAACT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110664398 8 - 189454096 TGTTAACT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13232183 8 + 26754465 TGTTAACT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4134512 8 - 5137665 TGTTAACT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 41406 8 - 60632 TGTTAACT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1949740 8 + 2427316 TGTTAACT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1237932 8 + 1448899 tgttaact i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52976403 8 - 190850796 TGTTAACT i calJac3.chr3 C 0 I 310 s saiBol1.JH378162 8138382 8 - 15139346 TGTTAACT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6920739 8 - 7304997 TGTTAACT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9339179 8 - 11631747 TGTTAACT i aotNan1.NW_018493494v1 I 312 C 0 s mm10.chr5 76390909 6 + 151834684 --TTAATT i mm10.chr5 C 0 C 0 s canFam3.chr13 47944354 8 + 63241923 TGTTAATT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4049714 8 - 5279953 TGTTAACT i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8582196 249 + 8790067 I a score=32661.000000 s hg38.chr4_KI270787v1_alt 7450 2 + 111943 GT s panTro5.chr4 119569762 2 - 194502333 GT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120986043 2 - 195804263 GT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4417128 2 - 17550833 GT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69292565 2 - 118206036 GT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111496292 2 - 190429646 GT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110664406 2 - 189454096 GT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13232191 2 + 26754465 GT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4134520 2 - 5137665 GT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 41414 2 - 60632 GT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1949748 2 + 2427316 GT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1237940 2 + 1448899 gt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52976721 2 - 190850796 GT i calJac3.chr3 I 310 C 0 s saiBol1.JH378162 8138390 2 - 15139346 Gt i saiBol1.JH378162 C 0 I 309 s cebCap1.NW_016107439v1 6920747 2 - 7304997 GT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9339187 2 - 11631747 GT i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76390915 2 + 151834684 GT i mm10.chr5 C 0 C 0 s canFam3.chr13 47944362 2 + 63241923 GT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4049722 2 - 5279953 GT i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8582196 249 + 8790067 I a score=1882285.000000 s hg38.chr4_KI270787v1_alt 7452 182 + 111943 TAATTCTCTGTCAGTAGGCCATAGTGTTCTC-GTCTCTGTTCTAGTCCTCGTCTAGATCTTTCTCTTCTTCTGTTGGGCCAGGTTTTATTCCTCTGACCTCTATTGTACATTTCTATGTTGTAGATGGATCTGTATGAGCCAGGGACACATT----TATGAA----AGAGAAACTGATC----------------ACTCTGTCGTAT s panTro5.chr4 119569764 182 - 194502333 TAATTCTCTGTCAGTAGGCCATAGTGTTCTC-ATCTCTGTTCTAGTCCTCGTCTAGATCTTTCTCTTCTTCTATTGGGCCAGGTTTTATTCCTCTGACCTCTATTGTACATTTCTATGTTGTAGATGGATCTGTATGAGCCAGGGACACATT----TATGAA----AGAGAAACTGATC----------------ACTCTGTCGTAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120986045 182 - 195804263 TAATTCTCTGTCAGTAGGCCATAGTGTTCTC-ATCTCTGTTCTAGTCCTCGTCTAGATCTTTCTCTTCTTCTATTGGGCCAGGTTTTATTCCTCTGACCTCTATTGTACATTTCTATGTTGTAGATGGATCTGTATGAGCCAGGGACACATT----TATGAA----AGAGAAACTGATC----------------ACTCTGTCATAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4417130 182 - 17550833 TAATTCTCTGTCAGTAGGCCATAGTGTTCTC-GTCTCTGTTCTAGTCCTCGTCTAGATCTTTCTCTTCTTCTATTGGGCCAGGTTTTATTCCTCTGACCTCTATTGTACATTTCTATGTTGTAGATGGATCTGTATGAGCCAGGGACACATT----TATGAA----AGAGAAACTGATC----------------ACTCTGTCATAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69292567 183 - 118206036 TAATTCTCCCTCAGTAGGCCATAGTGTTCTCTGTCTCTGTTCTAGTCCTCATCTAGATCTTTCACTTCTTCTATCGGGCCAGGTTTTATTCCTCTGACCTCTATTGTACATTTCTATGTTGTAGATGGATCTATATGAGCCAGGGACACATT----TATGAA----CGAGAAACTGATC----------------ACTCTGTCATAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111496294 179 - 190429646 TAATTCTCCCTTGGTAGGCCATGGTGTTCTCTGTCTCTGTTCTAGTCCTTGTCTAGATCTTTC---TCTTCTATTGGGCCAGGTTTTATTCCTCTGACCTCTATTGTAAATTTCTATG-TGTAGATGGATCTGTATGAGCCAGGGACACGTT----TATGAA----CAAGAAATTGATC----------------ACTCTCTCATAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110664408 179 - 189454096 TAATTCTCCCTTGGTAGGCCATGGTGTTCTCTGTCTCTGTTCTAGTCCTTGTCTAGATCTTTC---TCTTCTATTGGGCCAGGTTTTATTCCTCTGACCTCTATTGTAAATTTCTATG-TGTAGATGGATCTGTATGAGCCAGGGGCACATT----TATGAA----CAAGAAATTGATC----------------ACTCTCTCATAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13232193 179 + 26754465 TAATTCTCCCTTGGTAGGCCATGGTGTTCTCTGTCTCTGTTCTAGTCCTTGTCTAGATCTTTC---TCTTCTATTGGGCCAGGTTTTATTCCTCTGACCTCTATTGTAAATTTCTATG-TGTAGATGGATCTGTATGAGCCAGGGGCACATT----TATGAA----CAAGAAATTGATC----------------ACTCTCTCATAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4134522 179 - 5137665 TAATTCTCCCTTGGTAGGCCATGGTGTTCTCTGTCTCTGTTCTAGTCCTTGTCTAGATCTTTC---TCTTCTATTGGGCCAGGTTTTATTTCTCTGACCTCTATTATAAATTTCTATG-TGTAGATGGATCTGTATGAGCCAGGGACACATT----TATGAA----CAAGAAATTGATC----------------ACTCTCTCATAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 41416 182 - 60632 TAATTCTCCCTTGGTAGGCCATGGTGTTCTCTGTCTCTGTTCCAGTCCTTGTCTAGATCTTTCCCTTCTTCTATTGGGCCAGGTTTTATTCCTCTGACCTCTATTGTACATTTCTATG-TGTAGATGGATCTGTATGAGCCAGGGACACATT----TATGAA----CAAGAAATTGATC----------------ACTCTCTCATAT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1949750 179 + 2427316 TAATTCTCCCTTGGTAGGCCATGGTGTTCTCTGTCTCTGTTCTAGTCCTTGTCTAGATCTTTC---TCTTCTATTGGGCCAGGTTTTATTCCTCTGACCTCTATTGTAAATTTCTATG-TGTAGATGGATCTGTATGAGCCAGGGACACATT----TATGAA----CAAGAAATTGATC----------------ACTCTCTCATAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1237942 182 + 1448899 taattctccctcagtaggccgtagtgttctctgtctctgttctagtccttgtctagatctttctcttcttctattgggccaggttttattcctctGACCTCTATTGTACATTTCTATG-TGTAGATGGATCTGTATGAGCCAGGGACACATT----TATGAA----CAAGAAACTGATC----------------ACTCTCTCATAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52976723 173 - 190850796 ----------TAAATAGGCCATAATGTTCTGTGTCTCTGTCCTAGTCTTCATCTAGATCTTTCCCTTCTTCTATTGGGCCCAGTTCTAGTCCTCTGACATCTATTGTACATTTCTTTGTTGTAGATGGATCTGTATGAGCCAGGGACATATT----TATGAA----CAAGAAATGAATC----------------ACTTTCTCATAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8138701 182 - 15139346 TAATTCTCCCTCAATAGGCCATAGCATTCTCTGTCTCTGTTCCAGTCTTCCTCTAGCTCTTTCCCTTCTTCTATTGGGTCCGGTTCTA-TCCTCTGACCTCTATTGTACATTTCTTTGTTGTAAATGGATCTGTATGAGCCAGGGATACATT----TACAAA----CAAGAAATGAATC----------------ATTTTCTCATAT i saiBol1.JH378162 I 309 C 0 s cebCap1.NW_016107439v1 6920749 181 - 7304997 TAATTCTTC-TCAATAGGCCATAGGATTCTCTGTCTCTGGTCTAGTCTTTGTCTAGCTCTTTCCCTTCTTCTATTGGGCCCGATTCTATTCCTCTGACCTCTATTGTACATTTCTTTGTTGTAGATGGATC-GTATGAGCCAGGGATACATT----TACGAA----CAAGAAATGAATC----------------ACTTTCTCATAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9339189 199 - 11631747 TAATTCTCCCTCAATAGGCCATAATGTTCTCTGTCTCTGTTCTAGTCTTCATCTAGCTCTTTCCCTTCTTCTATTGGGCCCAGTTCTATTCCTCTGACTTCTATTGTACATTTCTTTGTTGTAGATGGATCTGTATGAGCCAGGGACACATT----TATGAA----CAAGAAATGATTTTTTTGTTCTCATATAGACTTTCTCATAT i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76390917 153 + 151834684 -------TCATCTCTGGGACACAATGCTTTA-------------------ATCCAGAACTTTC---TCTTCCGTTCTTTCA-GCTCTGCATTTCTGAACTATTCTGCACACTTTTGTGTTATAGATATGTGTGTGTGGGCCAGGGACATAAC----TGTGAA----CTTAGGACTAATC----------------ACTTTCTCATAT i mm10.chr5 C 0 C 0 s canFam3.chr13 47944364 171 + 63241923 TGATCTTCCCTCAGTAGGACATAATGCTCTGTGCTTCTGTTCTGGTCCAAGTTTAGATCT------TTTTCTACTCGGTCAGGTTCTATGCCTCTGACATCTATTGTACAC-TCTATGTTCTAGGTGGGTCCATA----CCATGGATAGAAC----TGTGAATATTCAAAATATGACTT----------------AATTTAT----- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4049724 168 - 5279953 TGGTCCTCC-TCAGTAGACTACTGGATTCT--GTTCCTGTCC---------TCCCGATCTTTCTCTTCTTCCACTAGGCCAAGTTCTATGCCTCTAAACTCTGCTGTACA--TCTGTGTTCCAAATGGGTCCATA-----CATGTTCACAATGTGCTGTGAA----CAAGAGACTGATC----------------ACTTTCTCATAT i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8582196 249 + 8790067 I a score=934861.000000 s hg38.chr4_KI270787v1_alt 7634 103 + 111943 TAGACTTCATTCTCTCTTCA---ACTCAAAATATCTGTCTCCCCCAAGGTTCAGCAAGG--TA-TTTTTTTG----------------GTTTTTCAATT----TGTGTTCTTTT-TAAATTGCTATTTTC s panTro5.chr4 119569946 103 - 194502333 TAGACTTCATTCTCTCTTCA---ACTCAAAATATCTGTCTCCCCCAAGGTTCAGCAAGG--TA-TTTTTTTG----------------GTTTTTCAATT----TGTGTTCTTTT-TAAATTGCTATTTTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 120986227 103 - 195804263 TAGACTTCATTCTCTCTTCA---ACTCAAAATATCTGTCTCCCCCAAGGTTCAGCAATG--TA-TTTTTTTG----------------GTTTTTCAATT----TGTGTTCTTTT-TAAATTGCTATTTTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4417312 102 - 17550833 TAGACTTCATTCTCTCTTCA---ACTCAAAATATCTGT-TTCCCCAAGGTTCAGCAAGG--TA-TTTTTTTG----------------GTTTTTCAATT----TGTGTTCTTTT-TAAATTGCTATTTTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69292750 104 - 118206036 TAGACTTCATTCTCTCTTCA---ACTCAAAATATCTGTCTCCCCCAAGGTTCAGCAAGG--TATTTTTTTTG----------------GTTTTTCAATT----TGTGTTCTTTT-TAAATTGCTATTTTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111496473 111 - 190429646 TAGAATTCATTCTCTCTTCA---ACTCAAAATATCTGTCTCCCCCAAGGTTCAGCAAGg--ta-tttttttgttttgtttt-------gtttttcaatt----tgtgtt-tttt-tAAATTGCTATTTTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110664587 111 - 189454096 TAGAATTCATTCTCTCTTCA---ACTCAAAATATCTGTCTCCCCCAAGGTTCAGCAAGg--ta-tttttttgttttgtttt-------gtttttcaatt----tgtgtt-tttt-tAAATTGCTATTTTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13232372 111 + 26754465 TAGAATTCATTCTCTCTTCA---ACTCAAAATATCTGTCTCCCCCAAGGTTCAGCAAGG--TA-TTTTTTTGTTTTGTTTT-------GTTTTTCAATT----TGTGTT-TTTT-TAAATTGCTATTTTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4134701 118 - 5137665 TAGAATTCATTCTCTCTTCA---ACTCAAAATATCTGTCTCCCCCAAGGTTCAGCAAGG--tt-tttttctttttttttttttttttggtttttcaatt----tgtgtt-tttt-tAAATTGCTATTTTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 41598 117 - 60632 TAGAATTCATTCTCTCTTCA---ACTCAAAATATCTGTCTCCCCCAAGGTTCAGCAAGGtttt-tttttttttttttttttttt----gtttttcaatt----tgtgttctttt-tAAATTGCTATTTTC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1949929 114 + 2427316 TAGAATTCATTCTCTCTTCA---ACTCAAAATATCTGTCTCCCCCAAGGTTCAGCAAGG--TA-tttttttttttttttttttt----gtttttcaatt----tgtgtt-tttt-tAAATTGCTATTTTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1238124 111 + 1448899 TAGACTTCATTCTCTCTTCA---ACTCAAAATGTCTGTCTCCCCCAAGGTTCAGCAAGG--tt-tttttttttttttttg--------gtttttcaatt----tgtgttctttt-tcaattgctattttc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52976896 101 - 190850796 TAGACTTCATTATCTCTTCA---ACCCAAAATA--TGTCTCCCCCAAGGTTCAGCAAAG--TA-GTTATTTG----------------GTTTTGCAATT----TATGTTCTTTT-AAAATTGCTATTGTC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8138883 101 - 15139346 TAGACTTCATTCTCTCTTTA---ATCGAAAATA--TGTCTCCCCCAAGGTTCAACAAAG--TA-TTTATTTG----------------TTTTTTCAACG----TGTGTTCTTTT-AAAATTGCTATTGTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6920930 101 - 7304997 TAGATTTCATTCTCTATTTA---ATCGAAAATA--CGTCTCCCCCAAGGTTCAGCAAAG--TA-TTTATTTG----------------GTTTTTCAATG----TGTGTTCTTTT-AGAATTGCTATTGTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9339388 98 - 11631747 TAGACTTCATTCTCTCTTCA---ATCCAAAATA--TGTCTCTCCCAAGGTTCAGCAAAG--TA-TTCA--------------------GTTTTTCAATT----TGTGTTCTTTCAAAAATTGCTATTGTC i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47944535 85 + 63241923 TTTATTTCATTTTCATTT-----------AATTTGTATTtctctcaggg------gaag--tc-ccttcttc----------------tccttaca-------tttgtt-tttc-tcatctgccattctc i canFam3.chr13 C 0 I 8 s dasNov3.JH568349 4049892 112 - 5279953 TAGACTTCATTCTCAATTCAGTTATTCAAAATATCTGTCTCCCACAGGGTTCTGCAAGGGTGT-TTCTTTTG----------------GTTTTATGATTCCTGTATTTTGTTTT-TAAATTTGTATTGCC i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76391070 0 + 151834684 C e otoGar3.GL873602 8582196 249 + 8790067 I a score=456597.000000 s hg38.chr4_KI270787v1_alt 7737 43 + 111943 CAATGCCAGTGTATCAGATGTTAGGATCCTGGTTCTTTAAAAT s panTro5.chr4 119570049 43 - 194502333 CAATGCCAGTGTATCAGATGTTAGGATCCTGGTTCTTTAAAAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120986330 43 - 195804263 CAATGCCAGTGTATCAGATGTTAGGATCCTGGTTCTTTAAAAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4417414 43 - 17550833 CACTGCCAGTGTATCAGATGTTAGGATCCTGGTTCTTTAAAAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69292854 43 - 118206036 CAATGCCAATGTATCAGATGTTAGGATTCCGGTTCTTTAAAAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111496584 43 - 190429646 CAATGCCAATGTATCAGACGTTAGGATCCTGGTTCTTTAAAAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110664698 43 - 189454096 CAATGCCAATGTATCAGACGTTAGGATCCTGGTTCTTTAAAAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13232483 43 + 26754465 CAATGCCAATGTATCAGACGTTAGGATCCTGGTTCTTTAAAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4134819 43 - 5137665 CAATGCCAATGTATCAGACATTAGGATCCTGGTTCTTTAAAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 41715 43 - 60632 CAATGCCAATGTATCAGACGTTAGGATCCTCGTTCTTTAAAAT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1950043 43 + 2427316 CAATGCCAATGTATCAGACGTTAGGATCCTGGTTCTTTAAAAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1238235 43 + 1448899 CAATGCCAGTGTATCACATGTTAGGATTCTGGTTCTTTAAAAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52976997 43 - 190850796 CAATGCCAGTGTATCAGATGTTAGGATCCTGGTCCTTTAAAAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8138984 43 - 15139346 CAATGTCAGTGTATCAGATGTTAGGATCCTGGTCCTTTAAAAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6921031 43 - 7304997 CAATGCCAATGTATCAGATGTTAGGATCCTGGTCCTTTAAAGT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9339486 43 - 11631747 CAATGCCAGTGTATCAGATGTTAGGATCCTGGTCCTTTAAAAT i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4050004 37 - 5279953 TAGTGCTATGGTATCAG------TGCTTTATGTCCTCTAAAAT i dasNov3.JH568349 C 0 I 426 e mm10.chr5 76391070 0 + 151834684 C e otoGar3.GL873602 8582196 249 + 8790067 I e canFam3.chr13 47944620 8 + 63241923 I a score=2847912.000000 s hg38.chr4_KI270787v1_alt 7780 298 + 111943 ACCTTCTATACCAGTGCGAGAGTAAATTAGAATCCTGTAAGATTTTAAAAGAGGAAGAGAACATATTCTTGGTTGGATATTCCCTGGGATGCAGTCTCTTATTATTTAAATGGCTTTTCTTGTAGAGCTGTTTCTCTGTTCTAGTAACAATGCTTCCATTGTAACTGCCTGCTCTGGAGAACAGAGATTGGCCCCATAGTGGA---CTCTGTAGGCTAACTCTGCACAGGTTCTATAGGTACAGGGAAGGCTCTGGCTATGTAAGTTTCAAAACTT---------------CTTTGAATACTC--AACTTTATATTGC s panTro5.chr4 119570092 298 - 194502333 ACCTTCTATACCAGTGTGAGAGTAAATTAGAATCCTGTAAGATTTTAAAAGAGGAAGAGAACATATTCTTGGTTGGATATTCCCTGGGATGCAGTCTCTTATTATTTAAATGGCTTTTCTTGTAGAGCTGTTTCTCTGTTCTAGTAACAATGCTTCCATTGTAACTGCCTGCTCTGGAGAACAGAGATTGGCCCCATAGTGGA---CTCTGTAGGCTAACTCTGCACAGGTTCTATAGGTACAGGGAAGGCTCTGGCTATGTAAGTTTCAAAACTT---------------CTTTGAATACTC--AACTTTATATTGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 120986373 298 - 195804263 ACCTTCTATACCAGTGTGAGAGTAAATTAGAATCCTGTAAGATTTTAAAAGAGGAAGAGAACATATTCTTGGTTGGATATTCCCTGGGATGCAGTCTCTTATTATTTAAATGGCTTTTCTTGTAGAGCTGTTTCTCTGTTCTAGTAACAATGCTTCCATTGTAACTGCCTGCTCTGGAGAACAGAGATTGGCCCCATAGTGGA---CTCTGTAGGCTAACTCTGCACAGGTTCTATAGGTACAGGGAAGGCTCTGGCTATGTAAGTTTCAAAACTT---------------CTTTGAATACTC--AACTTTATATTGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4417457 298 - 17550833 ACCTTCTATACCAGTGTGAGAGTAAATTAGAATCCTGTAAGATTTTAAAAGAGGAAGAGAACATATTCTTGGTTGGATATTCCCTGGGATGCAGTCTCTTATTATTTAAATGGATTTTCTTGTAGAGCTGTTTCTCTGTTCTAGTAACAATGCTTCCATTGTAACTGCCTGCTCTGGAGAACAGAGATTGGCCCCATAGTGGA---CTCTGTAGGCTAACTCTGCACAGGTTCTATAGGTACAGGGAAGGCTCTGGCTATGTAAGTTTCAAAACTT---------------CTTTGAATACTC--AACTTTATATTGC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69292897 298 - 118206036 ACCTTCTATACCAGTGTGAGAGTAAATTAGAATCCTGTAAGATTTTAAAAGAGGAAGAGAACATATTCTTGGCTGGATATTCCCTGGGATGCAGTCTCTTATTATTTAAATGGATTTTCTTGTAGAGCTGTTTCTCTGTTCTAGTAACAATGCTTCTATTTTAACTGCCTGCTCTGGAGAACAAGGATTGGCCCCATAGTGGA---TTCTGTAGGCTAACTCTGCACAGGTTGTATAGGCACAGGGAAGGCTCTGGCTATGTAAGTTTCAAAACTT---------------CTTTGAATACTC--AACTTTATATTGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111496627 267 - 190429646 ACCTTCTATACCAGTGTGGGAGTAAATTAGAATCCTCTAAGATTTTAGAAGAGGAAGAGAACATATTCTTGGTTGG-------CTGGGATGCAGTCTCT----ATT--------------------GCTGTTTCTCTGTTCTAGTAACAATGCTTCCATTGTAACTGCCGGCTCTGGAGAACAGAGATTGGCCCCATAGTGGA---CTCTGTAGGCTAACTCTGCACAGGTCCTGTAGGCACAGGGAGGGCTCCGGCTATGTAAGTTTCAAAACTT---------------CTTTGAATACTC--AACTTTATATTGC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110664741 267 - 189454096 ACCTTCTATACCAGTGTGGGAGTAAATTAGAATCCTCTAAGATTTTAGAAGAGGAAGAGAACATATTCTTGGTTGG-------CTGGGATGCAGTCTCT----ATT--------------------GCTGTTTCTCTGTTCTAGTAACAATGCTTCCATTGTAACTGCCGGCTCTGGAGAACAGAGATTGGCCCCATAGTGGA---CTCTGTAGGCTAACTCTGCACAGGTCCTGTAGGCACAGGGAGGGCTCCGGCTATGTAAGTTTCAAAACTT---------------CTTTGAATACTC--AACTTTATATTGC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13232526 265 + 26754465 ACCTTCTATACCAGTGTGGGAGTAAATTAGAATCCTCTAAGATTTTAGAAGAGGAAGAGAACATATTCTTGGTTGG-------CTGGGATGCAGTCTCT----ATT--------------------GCTGTTTCTCTGTTCTAGTAACAATGCTTCCATTGTAACTGCCGGCTCTGGAGAACAGAGATTGGCCCCATAGTGGA---CTCTGTAGGCTAA--CTGCACAGGTCCTGTAGGCACAGGGAGGGCTCCGGCCATGTAAGTTTCAAAACTT---------------CTTTGAATACTC--AACTTTATATTGC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4134862 267 - 5137665 ACCTTCTATACCAGTGTGGGAGTAAATTAGAATCCTCTAAGATTTTAGAAGAGGAAGAGAACATATTCTTGGTTGG-------CTGGGATGCAGTCTCT----ATT--------------------GCTGTTTCTCTGTTCTAGTAACAATGCTTCCATTGTAACTGCCGGCTCTGGAGAACAGAGATTGGCCCCATAGTGGA---CTCTGTAGGCTAACTCTGCACAGGTCCTGTAGGCACAGGGAGGGCTCCGGCTATGTAAGTTTCAAAACTT---------------CTTTGAATACTC--AACTTTATATTGC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 41758 267 - 60632 ACCTTCTATACCAGTGTGGGAGTAAATTAGAATCCTCTAAGATTTTAGAAGAGGAAGAGAACATATTCTTGGTTGG-------CTGGGATGCAGTCTCT----ATT--------------------GCTGTTTCTCTGTTCTAGTAACAATGCTTCCATTGTAACTGCCGGCTCTGGAGAACAGAGATTGGCCCCATAGTGGA---CTCTGTAGGCTAACTCTGCGCAGGTCCTATAGGCACAGGGAAGGCTCCGGCTATGTAAGTTTCAAAACTT---------------CTTTGAATACTC--AACTTTATATTGC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1950086 267 + 2427316 ACCTTCTATACCAGTGTGAGAGTAAATTAGAATCCTCTAAGATTTTAGAAGAGGAAGAGAACATATTCTTGGTTGG-------CTGGGATGCAGTCTCT----ATT--------------------GCTGTTTCTCTGTTCTAGTAACAATGCTTCCATTGTAACTGCCGGCTCTGGAGAACAGAGATTGGCCCCATAGTGGA---CTCTGTAGGCTAACTCTGCACAGGTCCTGTAGGCACAGGGAGGGCTCCGGCTATGTAAGTTTCAAAACTT---------------CTTTGAATACTC--AACTTTATATTGC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1238278 266 + 1448899 ATCTTCTATACCAGTGTGGGAGTAAATTAGAATCCTCTAAGATTTTAAAAGAGGAAGAGAACATATTCTTGGTTGG-------CTGGGATGCAGTCTCT-----TT--------------------GCTGTTTCTCTGTTCTAGTAACGATGCTTCCATTGTAACTGCCTGCTCTGGAGAACAGAGATTGGCCCCATAGTGGA---CTCTGTAGGATAACTCTGCACAGGTCCTATAGGCACAGGGAAGGCTCCGGCTATGTAAGTTTCAAAACTT---------------CTTTGAATACTC--AACTTTATATTGC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52977040 300 - 190850796 ACTTTCTGTACCAGTGTGGGAGTAGATTAGAATCCTCTAAGATTTTAAAAGAGGAAGAGAACATATTCGTGGTTGGATATTGCCTGGGATACAGTCTCTTATTATTTAAGTGGCTTTTCTTGTAGAGCTGCTTCTCTCTTCTAATACCAGGGTTTCCACTGTAACTTTCTGCTCTGGAGAACAGAGATTGGTCCCATAGTGAA---CTCTGTGGGCTAACTCTGTACAGGTTCTACAGGCACAGGGAGGGCTCTGACTGTGTAAGTTTCAAAAGTT---------------CTTTGAATACTCTTAACTTTATATTGC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8139027 300 - 15139346 ACTTTCTGTACCAATGTGGGAGTAGATTAGAATCCTCTAAGATTTTAAAAGAGGAAGAGAACATATTTGTGGTTGGATATTGCCTGGGATACAGTCTCTGATTATTTAAGTGGCTTTTCTTGTTGAGCTGCTTCTCTCTTGTAATAGCAGGGCTTCCACTGTAACTTTCTGCTCTGGAGAATAGAGATTGGTCCCATAGTGAA---CTCTGTAGGCTAACTCTGTACAGGTTCTACAGGCACAGGGAGGGCTCTGACTGTGTAAGTTTCAAAACTT---------------CTTTGAATACTCTTAACTTTATATTGC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6921074 299 - 7304997 ACTTTCTATACCAGTGTGGGAGTAGATTAGAATCCTCTAAGATTTTAAAAGAGGAAGAGAACATATTCATAGTTGGATATTGTCTGGGATACAGTCTCTTATTATTTACGTGGCTTTTCTTGTAGAGCTGCTTCTCTC-TCTAATACCAGGGCTTCTACTGTAACTTTCTGCTCTGGAGAACAGAGATTGGTCCCATAGTGAA---CTCTGTAGGCTAACTCTGTACAGGTTCTACAGGCACAGGGAGGGCTCTGACTGTGTAAGTTTCAAAACTT---------------CTTTGAATACTCTTAACTTTATATTGC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9339529 300 - 11631747 ACTTTCTGTACCAGTGTGGGAGTAGGTTAGAATCCTCTAAGATTTTAAAAGAGGAAGAGAACATATTCGTGGTTGGATATTGCAAGGGATACAGTCTCTTATTATTTAAGTGGCTTTTCTTATAGAGCTGCTTCTCTCTTCTAATACCAGGGCTTCCACTGTAACTTTCTGCTCTGGAGAACAGAGATTGGTCCCATAGTGAA---CTCTGTAGGCTAACTCTGTACAGGTTCTACAGGCACAGGGAGGGCTCTGACTGTGTAAGTTTTAAAACTT---------------CTTTGAATACTCTTAACTTTATATTTC i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4050467 313 - 5279953 ACTTTCTATAGCAATATGGGCATGAATTA-CATCCTCTAAATTTT---AACAGGAAAAGAGCATATTCTGGGTTGGATGCTGCCTGGAATATAGTCTCTCATTACTCAAGTGAATTTTCTTCTAGAGTTGTGCCTCTGTTCTAGTACAAATGCTTCCTTTGCTGCTGCCTGCTGTGGAGGGTGGAGACTGGCCTTGGAGCCAACAGCTGTCTGGGCTAACTCTGTGTGTGTACTACAGGCACAAGGCAGGCTCTGGCTAGACGAGTTTCAAAAGTTCCTGTCACTTAGTAGCCTTGAATACTC-TTACTGTAGATGGC i dasNov3.JH568349 I 426 I 417 e mm10.chr5 76391070 0 + 151834684 C e otoGar3.GL873602 8582196 249 + 8790067 I e canFam3.chr13 47944620 8 + 63241923 I a score=1147953.000000 s hg38.chr4_KI270787v1_alt 8078 107 + 111943 TTGAAAAC-TTTGTGAATCTCAAAAAGTGAGGAAAATTAGGAAAATCTGAAAAGTTTCAGTTAACATGGGATAAATCCTGAATATACATGACGTGGAAAATGGCAGAT s panTro5.chr4 119570390 107 - 194502333 TTGAAAAC-TTTGTGAATCTCAAAAAGTGAGAAAAATTAGGAAAATCTGAAAAGTTTCAGTTAACATGGGATAAATCCTGAGTATACATGACGTGGAAAATGGCAGAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120986671 107 - 195804263 TTGAAAAC-TTTGTGAATCTCAAAAAGTGAGAAAAATTAGGAAAATCTGAAAAGTTTCAGTTAACATGGGATAAATCCTGAATATACATGACGTGGAAAATGGCAGAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4417755 107 - 17550833 TTGAAAAC-TTTGTGAATCTCAAAAAGTGAGAAAAGTTAGTAAAATCTGAAAAGTTTCAGTTAACATGGGATAAATCCTGAATATACATGACGTGGAAAATGGCAGAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69293195 107 - 118206036 TTGAAAAC-TTTCTGAATCTCAAAGAGTGAGAAAAATTAGGAAAATCTGAAAAGTTTCAGTTAACATGGGATAAATCCTGAATATACGTGACATGGAAAATGGCAGAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111496894 108 - 190429646 TTGAAAACTTTTGTGAATCTCAAAAAGTGAGAAAAATTAGGAAAATCAGAAAAGTTTCAGTTAACATGGGATAAATTCTGAATATACATGACATGGAAAATGGCAGAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110665008 108 - 189454096 TTGAAAACTTTTGTGAATCTCAAAAAGTGAGAAAAATTAGGAAAATCTGAAAAGTTTCAGTTAACATGGGATAAATTCTGAATATACATGACATGGAAAATGGCAGAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13232791 108 + 26754465 TTGAAAACTTTTGTGAATCTCAAAAAGTGAGAAAAATTAGGAAAATCTGAAAAGTTTCAGTTAACATGGGATAAATTCTGAATATACATGACATGGAAAATGGCAGAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4135129 108 - 5137665 TTGAAAACTTTTGTGAATCTCAAAAAGTGAGAAAAATTAGGAAAATCTGAAAAGTTTCAGTTAACACGGGATAAATTCTGAATATACATGACATGGAAAATGGCAGAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 42025 108 - 60632 TTGAAAACTTTTGTGAATCTCAAAAAGTGAGAAAAATTAGGAAAATCTGAAAAGTTTCAGTTAACATGGGATAAATTCTGAATATACATGACATGGAAAATGGCAGAT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1950353 108 + 2427316 TTGAAAACTTTTGTGAATCTCAAAAAGTGAGAAAAATTAGGAAAATCTGAAAAGTTTCAGTTAACACGGGATAAATTCTGAATATACATGACATGGAAAATGGCAGAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1238544 108 + 1448899 TTGAAAACTTTTGTGAATCTCAAAATGTGAGAAAAATTAGGAAAATCTGAAAAGTTTCAGTTAACATTGGATAAATTTTGAATATACATGACATGGAAAATGACAGAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52977340 107 - 190850796 TTGAAAACTTCTGTGAGTCTCAAAAAGTGATAAAAA-TAGGAAAATCTGTAAGGTTTCAGTTAACATGGGATAAAACTTGAATATATGTGACATGGAAAATGGCAGAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8139327 108 - 15139346 TTGAAAACTTTTGTGAATCTCAAAAAGTGATAAAAATTAGGAAAATCTGTAAGGTTTCAGTTAACATGGGATAAATCTTGAATACATGTGACATGGAAAACGGCAGAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6921373 108 - 7304997 TTGAAAACTTTTGTGACTCTCAAAAAGTGATAAAAATTAGGAAAATCTGTAAGGTTTCAGTTAACATGGGATAAATCTTGAATATACATGACATGGAAAATGGCAGAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9339829 107 - 11631747 TTGAAAACTTTTGTGACTCTCAAAAAG-GATAAAAATTAGGAAAATCTGTAAGGTTTCAGTTAACATGGGATAAATCTTGAATACACATGACATGGAAAATGGCAGAT i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4051197 104 - 5279953 -TTTAAACTTTTGTGAATCTGAAAAAGTGAGAAGCCTAAG---AATTTATTAGGTTTCAGTTAACATGGGAAATATCCTGAATATGTATGAAATGGAAAATAGTATAT i dasNov3.JH568349 I 417 I 14 e mm10.chr5 76391070 0 + 151834684 C e otoGar3.GL873602 8582196 249 + 8790067 I e canFam3.chr13 47944620 8 + 63241923 I a score=3141921.000000 s hg38.chr4_KI270787v1_alt 8185 340 + 111943 GAAAACTGGTATTTATTCTTG-----AAA------AAAAAAAAACCTACCAATAGACCAAAAAAA-TTCCAAGGTAggccgggtgtggtggttaacacctgtaatcccagcactttcagaggctgaggtgggtggatcacttgaggtcaggagtttgagaccggcctagccaacgtggtgagaccccatttctactaaaaatacaaaaattagttgggcatggtggtgtgtgcctgtagtcctagctactcaggaggctgagccaggagaatcgcttgaacccaggaggcagagtgtgcagtgagccgagatcacgccactgcactccagcctgggtg---------------------acagagcaagaccc s panTro5.chr4 119570497 339 - 194502333 GAAAACTGGTATTTATTCTTG------AA------AAAAAAAAACCTACCAATAGACAAAAAAAA-TTCCAAGGGAggccgggtgtggtggttaacacctgtaatcccagcactttcagaggctgaggtgggtggatcacttgaggtcaggagtttgagaccggcctagccaacgtggagagacctcatttctactaaaaatacaaaaattagttgggcatggtggtgtgtgcctgtagtcttagctactcaggaggctgagccaggagaatcgcttgaacccaggaggcagagtgtgcagtgagccgagatcacgccactgcactccagcctgggtg---------------------acagagcaagaccc i panTro5.chr4 C 0 C 0 s panPan2.chr4 120986778 338 - 195804263 GAAAACTGGTATTTATTCTTG------AA------AAAAAAAAACCTACCAATAGAC-AAAAAAA-TTCCAAGGGAggccgggtgtggtggttaacacctgtaatcccagcactttcagaggctgaggtgggtgaatcacttgaggtcaggagtttgagaccggcctagccaacgtggagagacctcatttctactaaaaatacaaaaattagttgggcatggtggtgtgtgcctgtagtcttagctactcaggaggctgagccaggagaatcgcttgaacccaggaggcagagtgtgcagtgagccgagatcacgccactgcactccagcctgggtg---------------------acagagcaagaccc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4417862 340 - 17550833 GAAAACTGGTATTTATTCTTG-----AAA------AAAAAAAAACCTACCAATAGACCAAAAAAA-TTCCAAGGTAggccgggtgtggtggttaacacctgtaatcccagcactttcagaggctgaggtgggtggatcacttgaggtcaggagtttgacaccggcctagccaacatggtgagaccccatttgtactaaaaatacaaaaattagttgggcatggtggtgtgtgcctgtagtcctagctacacaggaggctgagccaggacaatcgcttgaacccaggaggcagagggtgcagtgagccgagatcacgccgctgcactccagcctgggtg---------------------acagagcaagaccc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69293302 342 - 118206036 GAAAACTGGTATTTACTCTTGGA---AAA------AAAAAAAAACCCACCAATAGACCAAAAAAA-TTCCAAGGTAggccgggtgtggtggctaacacctgtaatcctagcactttcggaggcctaggtgggcggatcacttgaggtcaggagtttgagacccacctagccaacatggcgagaccctgtttctactaaaaatacaaaaattggctgggcatggtggtgtgtgcctgtagtcctagctactcaggaggctgagccaggagaatcgcttgaacccgggaggcagaggatgcagtgagctgagatcacgccactgtgctccagcctgggtg---------------------acagagcaagaccc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111497002 336 - 190429646 GAAAACTGGTATTCACTCTTGAAAACAAA------AAACAAAAAAACACCAATAGACCAAACTAT-TTCCAAGGTAggccgggcgtggtggctaacacctataatcccagcacttttggaggccgaggcaggtggatcacctgaggtcaggagtttgagaccagcctagccaatgtggtgagactccttttctactaaaaatacaaaaattagctgggcatgatggtgtgcacctgtagtcctagctactcaggaggctgagccagga---------gaacccaggaggcagaggctgcagtgagccaagatcgtgccactgcgctccagcctgggtg---------------------acagaccaagaccc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110665116 336 - 189454096 GAAAACTGGTATTCACTCTTGAAAACAAA------AAACAAAAAAACACCAATAGACCAAACTAT-TTCCAAGGTAggccgggcgtggtggctaacacctataatcccagcactttcggaggccgaggcaggtggatcacctgaggtcaggagtttgagaccagcctagccaatgtggtgagactccgtttctactaaaaatacaaaaattagctgggcatgatggtgtgcacctgtagtcctagctactcaggaggctgagccagga---------gaacccaggaggcagaggctgcagtgagccaagatcgtgccactgcgctccagcctgggtg---------------------acagaccaagaccc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13232899 336 + 26754465 GAAAACTGGTATTCACTCTTGAAAACAAA------AAACAAAAAAACACCAATAGACCAAACTAT-TTCCAAGGTAggccgggcatggtggctaacacctataatcccagcactttcggaggccgaggcaggtggatcacctgaggtcaggagtttgagaccagcctagccaatgtggtgagactccgtttctactaaaaatacaaaaattagctgggcatgatggtgtgcacctgtagtcctagctactcaggaggctgagccagga---------gaacccaggaggcagaggctgcagtgagccaagatcgtgccactgcgctccagcctgggtg---------------------acagaccaagaccc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4135237 336 - 5137665 GAAAACTGGTATTCACTCTTGAAAACAAA------AAACAAAAAAACACCAATAGACCAAAATAT-TTCCAAGGTAggccgggcgtggtggctaacacctataatcccagcactttcggaggccgaggcaggtggatcacccgaggtcaggagtttgagaccagcctagccaatgtggtgagactccgtttctactaaaaatacaaaaattagctgggcatgatggtgtgcacccgtagtcctagctactcaggaagctgagccagga---------taacccaggaggcagaggctgcagtgagccaagattgtgccactgcgctccagcctgggtg---------------------acagaccaagaccc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 42133 357 - 60632 GAAAACTGGTATTCACTCTTGAAAACAAA------AAACAAAAAAACACCAATAGACCAAAAAAT-TTCCAAGGTAggctgggcgtggtggctaacacctataatcccagcactttcggaggccgaggcaggtggatcacctgaggtcaggagtttgagaccagcctagccaatgtggtgagactccgtttctactaaaaatacaaaaattagctgggcatgatggtgtgcacctgtagtcccagctactcaggaggctgagccagga---------gaatccaggaggcggaggctgcagtgagccaagattgtgccactgtgctccagcctcggtgacagagcaagaccctgtctcaaCAGAGCAAGACCC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1950461 336 + 2427316 GAAAACTGGTATTCACTCTTGAAAACAAA------AAACAAAAAAACACCAATAGACCAAAATAT-TTCCAAGGTAggccgggcgtggtggctaacacctataatcccagcactttcggaggccgaggcaggtggatcacctgaggtcaggagtttgagaccagcctagccaatgtggtgagactccgtttctactaaaaatacaaaaattagctgggcatgaaggtgtgcacctgtagtcctagctactcaggaagctgagccagga---------gaacccaggaggcagaggctgcagtgagccaagatcgtgccactgcgctccagcctgggtg---------------------acagaccaagaccc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1238652 332 + 1448899 GAAAACTGGCATTCACTCTTGA----AAA------AAAAAAAAAAACACCAATAGACCAAAAAAT-TTCCAAGGTAggctgggcatggtggctaacacctataatcccagcactttcagaggccgaggcaggtggatcacctgaggtcaggagtttgagaccagcctagccaatgtggtgagactccgtttctactaaaaatacaaaaagtagctgggcatgatggtgtgcacttgtagtcctagctactcaggaggctgagccagga---------gaacccaggaggcagagtctgcagtgagccaagatcatgcaactgcactccagcctggctg---------------------acagagcaagaccc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52977447 340 - 190850796 GAAAACTGGTATTTACCCTTG------GA------AAAAAAGAAAACACCAATAGACCAAAAAAATTTCCAAGGTAggccaggtgtggtggctaacacctctaatcccagcactttcgtaggctaagacaggtggatcacttgaggtcagtaatttgagaccagcctagccaacatggtgagaccccatttctactaaaaatacaaaaattagctgggcgtggtggtgtgtgcctgtagttctagctactcaggaggttgagccaggagaattgcttgaacccagaaggcagaggctatagtgagccaagatcgcgccactgcactccagcctgggtg---------------------acacagcaagactc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8139435 338 - 15139346 GAAAACTGGTATTTACCCTT-------GA------AAAAAAAAAACCACCAATAGACCAAAAAAA-TTCCAAGGTAggccaggtgtggtggctaacacctctaatcgcggcactttcggaggctaaggcaggtggatcacttgaggtcagtaatttgagaccagcctagccaacatggtgagaccctgtttctactaaaaacacaaaaattagctgggcatggtggtgtgtgcctgtagtcctagctgctcaggaggttgagccaggagaatcgcttgaacccagagggcagaggctacagtgagccgagatcgcaccactgcactccagcctggatg---------------------acagagcaagactc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6921481 344 - 7304997 GAAAACTGGTAATTACCCTT-------Gaaaaaacaaaaaaaaaaacaccaatagaccaaaaaaa-TTCCAAGGTAggccaggcatggtggctaacacctctaatcccagcactttgggaggctaaggcaggtggatcacttgaggtcagtaatttgagaccagcctagccaacatggtgagatcccatttctactaaaaatgcaaaaattagctgggcgtggtggtgtgtgcctgtagtcctagctacttaggaggttgagccaggagaatcacttgaacccgggaggcagaggctacagtaaactgagattgcgccactgcacgccagcctggatg---------------------acagagcaagaccc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9339936 339 - 11631747 GAAAACTGGTATTTACCCTTA------AA------AAAAAACAAACCACCAATAGACCAAAAAAA-TTCCAAGGTAggccaggtgtggtggctaacacctctaatcccagcagttttggaggctaaggcaagtggatcacttgaggtcagtaatttgagaccagcctagccaacatggtgagaccccatttctactaaaaatacaaaaattagctgggcgtggtggtgtgtgcctgtagtcctagctactcaggaggttgagccaggagaatcacttgaacccagaaggcagaggctacagtgagccgagatcgtgccactgcactccagccggggtg---------------------acagagcaagaccc i aotNan1.NW_018493494v1 C 0 C 0 e mm10.chr5 76391070 0 + 151834684 C e dasNov3.JH568349 4051301 14 - 5279953 I e otoGar3.GL873602 8582196 249 + 8790067 I e canFam3.chr13 47944620 8 + 63241923 I a score=41991.000000 s hg38.chr4_KI270787v1_alt 8525 4 + 111943 tgtc----- s panTro5.chr4 119570836 8 - 194502333 tgtc-acaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987116 8 - 195804263 tgtc-acaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418202 4 - 17550833 tgtc----- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69293644 8 - 118206036 tgtc-acaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111497338 8 - 190429646 tgtc-tcaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110665452 8 - 189454096 tgtc-tcaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233235 8 + 26754465 tgtc-tcaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4135573 8 - 5137665 tgtc-tcaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 42490 8 - 60632 TGTC-Tcaa i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1950797 8 + 2427316 tgtc-tcaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1238984 8 + 1448899 tgtc-tcaa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52977787 8 - 190850796 tgtc-aaaa i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8139773 8 - 15139346 tgtc-aaaa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6921825 9 - 7304997 tgtctaaaa i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9340275 8 - 11631747 tgtc-aaaa i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47944628 8 + 63241923 tgtc-tctt i canFam3.chr13 I 8 C 0 e mm10.chr5 76391070 0 + 151834684 C e dasNov3.JH568349 4051301 14 - 5279953 I e otoGar3.GL873602 8582196 249 + 8790067 I a score=1705244.000000 s hg38.chr4_KI270787v1_alt 8529 176 + 111943 a-------caaacaaacaa--------ac-------------aaaTCCAAGGCAATTTAAATATTTTAAATTCCATTTTAAAAATGTTTCAATATTTCTGAACCCAAAGTTTTTTGATTTCCATAAA--------TCTCTTTGGATTTCTACGTTGTAGGATGCTGCTAGGAACGTTGTGTCCTGTCTGTGAGCTCCTATGTGCTGAGCAAA s panTro5.chr4 119570844 176 - 194502333 a-------caaacaaacaa--------ac-------------aaaTCCAAGGCAATTTAAATATTTTAAATTCCATTTTAAAAATGTTTCAATATTTCTGAACCCAAAGTTTTTTGATTTCCATAAA--------TCTCTTTGGATTTCTACGTTGTAGGATGCTGCTAGGAACGTTGTGTCCTGTCTGTGAGCTCCTATGTGCTGAGCAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987124 176 - 195804263 a-------caaacaaacaa--------ac-------------aaaTCCAAGGCAATTTAAATATTTTAAATTCCATTTTAAAAATGTTTCAATATTTCTGAACCCAAAGTTTTTTGACTTCCATAAA--------TCTCTTTGGATTTCTACGTTGTAGGATGCTGCTAGGAACGTTGTGTCCTGTCTGTGAGCTCCTATGTGCTGAGCAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418206 176 - 17550833 a-------caaacaaacaa--------ac-------------aaaTCCAAGGAAATTTAAATATTTTAAATTCCATTTTAAAAATGTTTCAATATTTCTGAACCCAAAGTTTTTTGATTTCCATAAA--------TCTCTTTGGATTTCTACATTGTAGGATGCTGCTAGGAACGTTGTGTCCTGTCTGTGAGCTCCTATGTGCTGAGCAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69293652 176 - 118206036 a-------caaacaaacaa--------ac-------------aaaTCCAAGGCAATTTAAATATTTTAAATTCCATTTTTAAAATGTTTCAATATTTCTGAACCCAAAGTTTTTTTATTTCCATAAA--------TCTCTTTGGACTTCTATGTTGTAGGATGCTGCTAGGAACATTGTGTCCTGTCTGTGAGCTCCTGTGTGCTGAGCAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111497346 187 - 190429646 a-------caaacaaacaa--------acaaaCAGACAGACAAAATCCAAGGCAATTTAAACGTTTTAAATTCCATTTT-AAAATGTTTCAATATTTCTGAACCC-AAGTTTTTTGATTTCCATAAA--------CCTCTTTGGATTTCTGCGTTGTAGGATGCTGCTAGGAACATTGTGCCCTTTCTGTGAGCTTCTGTGTGCTGAGCAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110665460 187 - 189454096 a-------caaacaaacaa--------acaaaCAGACAGACAAAATCCAAGGCAATTTAAACGTTTTAAATTCCACTTT-AAAATGTTTCAATATTTCTGAACCC-AAGTTTTTTGATTTCCATAAA--------CCTCTTTGGATTTCTGCGTTGTAGGATGCTGCTAGGAACATTGTGCCCTTTCTGTGAGCTTCTGTGTGCTGAGCAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233243 195 + 26754465 a-------caaacaaacaaacaaacagacaaacagacagacaaaATCCAAGGCAATTTAAACGTTTTAAATTCCATTTT-AAAATGTTTCAATATTTCTGAACCC-AAGTTTTTTGATTTCCATAAA--------CCTCTTTGGATTTCTGCGTTGTAGGATGCTGCTAGGAACATTGTGCCCTTTCTGTGAGCTTCTGTGTGCTGAGCAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4135581 187 - 5137665 a-------caaacaaacaa--------acaaaCAGACAGACAAAATCCAAGGCAATTTAAACGTTTTAAATTCCATTTT-AAAATGTTTCAATATTTCTGAACCC-AAGTTTTTTGATTTCCATAAA--------CCTCTTTGGATTTCTGTGTTGTAGGATGCTGCTAGGAACATTGTGCCCTTTCTGTGAGCTTCTGTGTGCTGAGCAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 42498 186 - 60632 a-------caaacaaacaa--------acaaacaaacagacaaaATCCAAGGCAATTTAAACATTTTAAATTCCATTTT-AAAATGTTTCAATATTTCTGAACCC-AAGTTTTTTGATTTCCATAAA--------CCGCTTTGGATTTCTGCGTTGTAGGATGCTGCTAGG-ACACTGTGCCCTTTCTGTGAGCTTCTGTGTGCTGAGCAAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1950805 187 + 2427316 a-------caaacaaacaa--------acaaaCAGACAGACAAAATCCAAGGCAATTTAAACGTTTTAAATTCCATTTT-AAAATGTTTCAATATTTCTGAACCC-AAGTTTTTTGATTTCCATAAA--------CCTCTTTGGATTTCTGCGTTGTAGGATGCTGCTAGGAACATTGTGCCCTTTCTGTGAGCTTCTGTGTGCTGAGCAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1238992 182 + 1448899 a-------caaacaaacaa-------------caaacagacaaaaTCCAAGGCAATTTAAACATTTTAAATTCCATTTT-AAAATGTTTCAATATTTCTGAACCC-AAGTTTTTTTATTTCCATAAA--------CCTCTTTGGATTTCTGCGTTGTAGGATGCTGCTAGGAACATTGTGCCCTTTCTGTGAGCTTCTGTGTGCTGAGCAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52977795 167 - 190850796 a------------aaagaa--------a--------------aaaTCCAAGGCTGCTTAAACATTTTAAATTCCATTTT-AAAGTGTTTCAATATTTCTGAACCCAAAG--TTTTTATTTCCATAAA--------TCTCTTTGGATTCCTACATTGTAGAATGTTGCTGGGAACACTGCGTCCTGTCTCTGAGCTCCTGTATGCTGAGCAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8139781 180 - 15139346 acaaaaacaaaacaaaaca--------a--------------aaaTCCAAGGCCACTTAAACATTTTAAATTCCATTTT-AAAGTGTTTCAATATTTCTGAACCCAAAG-TTTTTTATTTCCATAAA--------TCTCTTTAGATTTCTGCATTGTAGGACGTTGCTGGGAACATTGTGTCCTGTCTGTGAGCACCTGTGTGCCGAGCAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6921834 169 - 7304997 a------------aaaaaa--------a--------------aaaTCCAAGGCCATTTAAACATTTTAAATTCCATTTT-AAAGTGTTTCAATATTTCTGAACCCAAAGATATTTTATTTCCATAAA--------TCTCTTTGGATTTCTGCATTGTAGGATATTGCTGGGAACATTGTGTCCTGTCTGTGAGCTCCTGTGTGCCGAGTAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9340283 175 - 11631747 a-----aaaaaaaaaaaaa--------a--------------aaaTCCAAGGCCACTTAATCATTTTAAATTCCATTTT-AAAGTGTTTCAATATTTCTGAACCCAAAG-TTTTTTATTTCCATAAA--------TCTCTTTGGATTCCTACATTGTAGGATGTTGCTGGGAACATTGTGTCCTGTCTGTGAGCTCCTGCATGCCGAGCAAA i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47944636 155 + 63241923 g-------cgaagaaataa--------ata------------caatcttaaaa-----aaaaTTTTTAAACTCTGTTT--AAATTGCTTCAATAATTCTGAAACTGAAG-TTTTTGATTCTCATGAGGTCATCTTCCTCTTTGGATTTCTACTTTGTGGAATGCTGT----------------------GGAGCTCCTATGAGCTGACTACA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4051315 161 - 5279953 A-------AGAACAAATAA-----------------------AAATTCAATGAAAATGAAAAAAAT--AATTCTATTTA-AAA--GTTTCAATAATTCTGAGCTTGAAG-TTTTTTATTCCGATGAGGTCATTC-CTTCTTTGGATTTCTACATTGTAGGCTACTACTAGGAACACTGT--CTTGTCTGTGTGCTCC------------AAA i dasNov3.JH568349 I 14 C 0 e mm10.chr5 76391070 0 + 151834684 C e otoGar3.GL873602 8582196 249 + 8790067 I a score=2450838.000000 s hg38.chr4_KI270787v1_alt 8705 194 + 111943 TGAACATAGCATGTGACTTTTGGAAGAATGATTCAGAGACCACTTT--------GGAAAAAAGATGTGCTTTTACCAGACACAAATGAAGATCACATGATTTGTCCAGTGTTTCCT-CCAAGCCCTCAAATTGTAAGAGAACCCAAGTCACTAAACGTCAAAGGTAACTTTT-TATT-----AATT-----AAGCAAGAGACCAGAAAAATAAA s panTro5.chr4 119571020 194 - 194502333 TGAACATAGCATGTGACTTTTGGAAGAATGATTCAGAGACCACTTT--------GGAAAAAAGATGTGCTTTTACCAGACACAAATGAAGATCACATGATTTGTCCAGTGTTTCCT-CCAAGCCCTCAAATTGTAAGAGAACCCAAGTCACTAAACGTCAAAGGTAACTTTT-TATT-----AATT-----AAGCAAGAGACCAGAAAAATAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987300 194 - 195804263 TGAACATAGCATGTGACTTTTGGAAGAATGATTCAGAGACCACTTT--------GGAAAAAAGATGTGCTTTTACCAGACACAAATGAAGATCACATGATTTGTCCAGTGTTTCCT-CCAAGCCCTCAAATTGTAAGAGAACCCAAGTCACTAAACGTCAAAGGTAACTTTT-TATT-----AATT-----AAGCAAGAGACCAGAAAAATAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418382 194 - 17550833 TGAACATAGCATGTGACTTTTGGAAGAATGATTCAGAGACCACTTT--------GGAAAAAAGATGTGCTTTTACCAGACACAAATGAAGATCACATGATTTGTCCAGTGTTTCCT-CCAAGCCCTCAAATTGTAAGAGAACCCAAGTCACTAAACGTCAAAGGTAACTTTT-TATT-----AATT-----AAGCAAGAGACCAGAAAAATAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69293828 194 - 118206036 TGAACATAACATGTGACTTTTTGAAGAATGATTCAGAGACCACTTT--------GGAAAAAAGATGTGCTTTTAGCAGACACAGATGAAGATCACGTGACTTGTCCAGTGTTTCCT-CCAAGCCCTCAAATTGTAAGAGAACCCAAGTCACTAAACGTCAAAGGTAACTTTT-TATT-----AATT-----AAGCAAGAGACCAGAAAAATAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111497533 192 - 190429646 TGAACACAGCATGTGACTTTTCGAAGAATGATTCAAAGACCACTCT--------GGGAAAAAGATGTGCTTTTACCAGACACAAATGAAGATCACATGACTTGTCCAGTGTTTCCT-CCAAGCCCTCAAATTGTAAG---ACCCAAGTCACTAAATATCAAAGGTAACTTTTTTATT-----AATT-----AAGCAAGAGACCAGAAAAATAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110665647 192 - 189454096 TGAACACAGCATGTGACTTTTCGAAGAATGATTCAAAGACCACTCT--------GGGAAAAAGATGTGCTTTTACCAGACACAAATGAAGATCACATGACTTGTCCAGTGTTTCCT-CCAAGCCCTCAAATTGTAAG---ACCCAAGTCACTAAATATCAAAGGTAACTTTTTTATT-----AATT-----AAGCAAGAGACCAGAAAAATAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233438 192 + 26754465 TGAACACAGCATGTGACTTTTCGAAGAATGATTCAAAGACCACTCT--------GGGAAAAAGATGTGCTTTTACCAGACACAAATGAAGATCACATGACTTGTCCAGTGTTTCCT-CCAAGCCCTCAAATTGTAAG---ACCCAAGTCACTAAATATCAAAGGTAACTTTTTTATT-----AATT-----AAGCAAGAGACCAGAAAAATAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4135768 192 - 5137665 TGAACACAGCATGTGACTTTTCGAAGAATGATTCAAAGACCACTCT--------GGGAAAAAGATGTGCTTTTACCAGACACAAATGAAGATCACATGACTTGTCCAGTGTTTCCT-CCAAGCCCTCAAATTGTAAG---ACCCAAGTCACTAAATATCAAAGGTAACTTTTTTATT-----AATT-----AAGCAAGAGACCAGAAAAATAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 42684 195 - 60632 TGAACACAGCATGTGACTTTTCGAAGAGTGATTCAAAGACCACTTT--------GGGAAAAAGATGTGCTTTTACCAGACACAAATGAAGATCACATGACTTGTCCAGTGCTTCCT-CCAAGCCCTCAAATTGTAAGAGAACCCAAGTCACTAAATATCAAAGGTAACTTTTTTATT-----AATT-----AAGCAAGAGACCAGAAAAATAAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1950992 192 + 2427316 TGAACACAGCATGTGACTTTTCAAAGAATGATTCAAAGACCACTCT--------GGGAAAAAGATGTGCTTTTCCCAGACACAAATGAAGATCACATGACTTGTCCAGTGTTTCCT-CCAAGCCCTCAAATTGTAAG---ACCCAAGTCACTAAATATCAAAGGTAACTTTTGTATT-----AATT-----AAGCAAGAGACCAGAAAAATAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239174 195 + 1448899 TGAACACAGCATGTGACTTTTTGAAGAATGATTCAAAGACCACTTT--------GGGAAAAAGATGTGCTTTTACCAGACACAAATGAAGATCACATGACTTGTCCAGTGTTTCCT-CCAAGCCCTCAAATTGTAAGAGAACCCAAGTCACTAAATATCAAAGGTAACTTTTTTATT-----AATT-----AAGCAAAAGACCAGAAAAATAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52977962 194 - 190850796 TGAACACAGCATGTGACTTTTTCAAGAATGATTCAGAGACCACTTT--------GGGAAAAGGACGTGCTTTTACCAGACACAAATGAAGATCACATGACTTGTCCACTTTTTCCT-CCAAGCCCTCAAATTGTAAGAGAACCCAAGTCACTAAACATCAAAGGTAACTTTT-TATT-----AATT-----AAGCAAAAGACCAGAAAAATAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8139961 194 - 15139346 TGAACACAGCATGTGACTTTTCCAAGAATGATTCAGAGACCACTTT--------GGGAAAAGGATGTGCTTTTACCAGACACAAATGAAGATCACATGACTTGTCCACTGTTTCCT-CCAAGCCCTCAAATTGTAAGAGAACCCAAGTCACTAAACATCAAAGGTAACTTTT-TATT-----AATT-----AAGCAAAAGACCAGAAAAATAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6922003 194 - 7304997 TCAACACAGCATGTGACTTTTCCAAGAATGATTCAGAGATCACTTT--------GGGAAAAGGACATGCTTTTACCAGACACAAATGAAGATCACATGATTTGTCCACTGTTTCCT-CCAAGCCCTCAAATTGTAAGAGAACCCAAGTCACTAATCATTAAAGGTAACTTTT-TATT-----AATT-----AAGCAAAAGACCAGAAAAATAAA i cebCap1.NW_016107439v1 C 0 I 6951 s aotNan1.NW_018493494v1 9340458 194 - 11631747 TGAACACACCATGTGACTTTTCCAAGAATGATTCAGAGACCACTTT--------GGGAAAAGGACGTGCTTTTACCAGACACAAAGGAAGATCACATGACTTGTCCACTGTTTCCT-CCAAGCCCTCAAATTGTAAGAGAACCCAAGTCACTAAACATCAAAGGTAACTTTT-TATT-----AATT-----AAGCAAAAGACCAGAAAAATAAA i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76391070 201 + 151834684 TGGACATAACAGATGGCTTTTGTAAGAATGACTCAGAGACCCCCCCCCCCCAAGGGAAAACAGACACGGTATTAGCAGACAGACAGGAAGATGACGTGGTGTGTCCACTCTTTCTG-CCAAGTCCTAAAATTCTAAGAGAACCTAAATCACTAAGCAACAAAGGTAACTTGT-TATC-----AAGT-----AAAGACCAGGCCAAAAAGTCAA- i mm10.chr5 C 0 C 0 s canFam3.chr13 47944791 195 + 63241923 TGGACAAAGCACATGATTTTTCTAAGGATGATTCAGAGACCATGTA--------G--AAAAAGACACACTCTCACTGAGC-CAAATGAAGATGACATGAATTGTCCACTGTTTCTG-CCAAGCCCCCAAATTGTAAGAGAACCCAAGTCCCTAAA-ATTAAAGGTATCTCTT-TATCAATTAAATT-----AAGCAAGAGACAAGGAAAGTCAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4051476 200 - 5279953 AGAACTTATGATATGATTTTCCTGAGAATGATTCAGAGAACACTCT--------GCATAAAGGATGTGCTCTTGCCAGGCACAAGTGAAGATCCTATGACTTGTCCATTGTTTTATGCCAAGCCCTAAAGTTGGAAAGGAACCCAAGTCACTAAAAATCACAGGTACCTCTT-TATC-----AATTAAACAAAGCAAGGGACAAGAAAAATAAA i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8582196 249 + 8790067 I a score=294633.000000 s hg38.chr4_KI270787v1_alt 8899 27 + 111943 ATCAGCAGCA----------------------------------------------------------GATTTTTAATTAATTCT s panTro5.chr4 119571214 27 - 194502333 ATCAGCAGCA----------------------------------------------------------GATTTTTAATTAATTCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987494 27 - 195804263 ATCAGCAGCA----------------------------------------------------------GATTTTTAATTAATTCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418576 27 - 17550833 ATCAGCAGCA----------------------------------------------------------GATTTTTAATTAATTCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294022 27 - 118206036 ATCAGCAGCA----------------------------------------------------------GATTTTTAATTAATTCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111497725 27 - 190429646 ATCAGCAGCA----------------------------------------------------------GATTTTTAATTAATCCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110665839 27 - 189454096 ATCAGCAGCA----------------------------------------------------------GATTTTTAATTAATCCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233630 27 + 26754465 ATCAGCAGCA----------------------------------------------------------GATTTTTAATTAATCCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4135960 27 - 5137665 ATCAGCAGCA----------------------------------------------------------GATTTTTAATTAATCCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 42879 27 - 60632 ATCAGCAGCA----------------------------------------------------------GATTTTTAATTAATCCT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951184 27 + 2427316 ATCAGCAGCA----------------------------------------------------------GATTTTTAATGAATCCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239369 27 + 1448899 ATCAGCAGCA----------------------------------------------------------GATTTTTAATTAATCCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978156 27 - 190850796 ATCAGCAGCA----------------------------------------------------------GATTTTTTATTAATTCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140155 27 - 15139346 ATCAGCAGCA----------------------------------------------------------GATTTTTAATTAATTCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6929148 27 - 7304997 ATCAGCAGCA----------------------------------------------------------GATTTTTAATTAATTCT i cebCap1.NW_016107439v1 I 6951 C 0 s aotNan1.NW_018493494v1 9340652 27 - 11631747 ATCAGCAGCA----------------------------------------------------------GATTTTTAATTAATTCT i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76391271 85 + 151834684 ATCAGAAGTGTTGATTTggggccgacaatacggttcagtgaataaaggtgcttgctgccaagtctgatgatttgggttcagtcct i mm10.chr5 C 0 I 124 s canFam3.chr13 47944986 29 + 63241923 ATAATAAACATG--------------------------------------------------------GATTTTGGATTAATTCT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4051676 29 - 5279953 ATCAGAAACATG--------------------------------------------------------GAATTTCAGTGAACTTT i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8582196 249 + 8790067 I a score=1618543.000000 s hg38.chr4_KI270787v1_alt 8926 140 + 111943 ACTGTAACA----ATGA-ACCTACACATGGTCTTTTAGGAGTCAAAT-AAAATAGGAATGTAAACTAT-------GTATTCTAAAATCCATGTAAAGT----------------------------------TCAGAATCAGATATTCAGAAG-GA-------ATGAGCCACACTACCAATTAAAATATCTGTTA s panTro5.chr4 119571241 140 - 194502333 ACTGTAACA----ATGA-ACCTACACATGGTCTTTTAGGAGTCAAAT-AAAATAGGAATGTAAACTAT-------GTATTCTAAAATCCATGTAAAGT----------------------------------TCAGAATCAGATATTCAGAAG-GA-------ATGAGCCACACTACCAATTAAAATATCTGTTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987521 140 - 195804263 ACTGTAACA----ATGA-ACCTACACATGGTCTTTTAGGAGTCAAAT-AAAATAGGAATGTAAACTAT-------GTATTCTAAAATCCATGTAAAGG----------------------------------TCAGAATCAGATATTCAGAAG-GA-------ATGAGCCACACTACCAATTAAAATATCTGTTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418603 140 - 17550833 ACTGTAACA----ATGA-ACCTACACATGGTCTTTTAGGAGTCAAAT-AAAATAGGAATGTAAACTAT-------GTATTCTAAAATCCATGTAAAGT----------------------------------TCAGAATCAGATATTCAGAAG-GA-------ATGAGCCACACTACCAATTAAAATATCTGTTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294049 140 - 118206036 ACTGTAGCA----ATGA-ACCTACACATGATCCTTTAGGAGTCAAAT-AAAATAGGAAGGTAAACTAT-------GTATTCTAAAATCCATGTAAAGT----------------------------------TCAGAATCAGATATTCAGAAG-GA-------ATGAGCCACACTACCAATTAAAATATCTGTTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111497752 140 - 190429646 ACTGTGGCA----ATGA-GCCTACACATGATTCTTTAGGAGTCAAAT-AAAATAAGAACGTAAACTAT-------GTACTCTAAAATCCATGTAAAGT----------------------------------TCAGGATCAGATATTCAGAAG-GA-------TTGAGCCATACTACCAATTAAAACATCTCTTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110665866 140 - 189454096 ACTGTGGCA----ATGA-GCCTACACATGATTCTTTAGGAGTCAAAT-AAAATAAGAACGTAAACTAT-------GTACTCTAAAATCCATGTAAAGT----------------------------------TCAGGATCAGATATTCAGAAG-GA-------TTGAGCCATACTACCAATTAAAACATCTCTTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233657 140 + 26754465 ACTGTGGCA----ATGA-GCCTACACATGATTCTTTAGGAGTCAAAT-AAAATAAGAACGTAAACTAT-------GTACTCTAAAATCCATGTAAAGT----------------------------------TCAGGATCAGATATTCAGAAG-GA-------TTGAGCCATACTACCAATTAAAACATCTCTTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4135987 140 - 5137665 ACTGTGGCA----ATGA-GCCTACACATGATTCTTTAGGAGTCAAAT-AAAATAAGAACGTAAACTAT-------GTACTCTAAAATCCATGTAAAGT----------------------------------TCAGGATCAGATATTCAGAAG-GA-------TTGAGCCATACTACCAATTAAAACATCTCTTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 42906 140 - 60632 ACTGTGGCA----ATGA-GCCTACACATGATTCTTTAGGAATCAAAT-AAAATAAGAACGTAAACTAT-------GTACTCTAAAATCCATGTAAAGT----------------------------------TCAGGATCAAATATTCAGAAG-GA-------TTGAGCCATACTACCAATTAAAACATCTCTTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951211 140 + 2427316 ACTGTGGCA----ATGA-GCCTACACATGATTCTTTAGGAGTCAAAT-AAAATAAGAACGTAAACTAT-------GTACTCTAAAATCCGTGTAAAGT----------------------------------TCAGGATCAGATATTCAGAAG-GA-------TTGAGCCATACTACCAATTAAAACATCTCTTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239396 140 + 1448899 GCTGTAGCA----GTGA-GCCTACACATGATTCTTTAGGAGTCAAAT-AAAATAAGAATGTAAACTAT-------ATACTCTAAAATCCATGTAAAGT----------------------------------TCAGGATCAGATATTCGGAAG-GA-------TTGAGCCATACTACCAATTAAAACATCTCTTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978183 140 - 190850796 ACTGTAGCA----ATGA-ACCTACACACGACCCTTTAGGAGTCAAAT-AAAACAGGAATGTAAACTAT-------GCATTCTAAAATCCATGTAAAAT----------------------------------TCAGAATCAGATATTCAGAAG-GA-------AGGAGCCACACTATGAATTAAAACATCTGTTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140182 140 - 15139346 ACTGTAGCA----ATGA-ACCTACACATGACCCTTTAGGAGTCAAAT-AAAATAGGAATGTAAACTAT-------GCATTCCAAAATCCATGTAAAAT----------------------------------TCAGAATCAGATATTCAGAAG-GA-------ATGAGCCACACTATGAATTAAAACATCTCTTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6929175 135 - 7304997 ACTGTAGCA----ATGA-ACCTACACATGACTCTTTAGGAGTCAAAT------AGGAATGTAAACTAT-------GTATTCTAAAATCCATGTAAAGT----------------------------------TCAGAATCAGATATTCAGAAG-GA-------ATGAGCCACACTACAAATTAAAACATTTCTTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9340679 140 - 11631747 ACTGTAGCA----ATGA-ACCTACACATGACTCTTTAGGAGTCAAAT-AGAATAGGAATGTAAACTAT-------GCATTCTAAAATCCATTTAAAAT----------------------------------TCAGAATCAGATATTCAGAAG-GA-------ATGAGCCACACTATGAATTAAAACATCTCTTA i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76391480 180 + 151834684 ATTTTTGTA----ATAG-AACTACACTTGGTTCTTCAGAAGTAAAAT-AAAATCGAAATAGAAACTGT--------TACTCTAACAACCATGTAAAGTGTGAtctctctctctctctcactctctctttctctcatacacacacacacacaca-cacacgtacacTGGCCAGGTCACTAAGTAAAATATCATTTA i mm10.chr5 I 124 C 0 s canFam3.chr13 47945015 143 + 63241923 TCTATAGCA----AAAG-AATTGCATATGGTTCTCCAGGAGTCAAAT-AAAATGGGAATCTAAATTACGTTTATAGTACTCTAAAATCCACTTAAAGC----------------------------------TGAGAATCATATGTTCACAAG-AA-------ATGAGCCATACTACCAATTAAAA----GCTAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4051705 154 - 5279953 ACTGTAGAGACATATGACATATATATATGATTTTCTAGGAGTCAAAAAAAAATGGGAATCTAAACAATGTTTTTAGTTTTCTAAAATCCACAGAAAGC----------------------------------TAAGAATCAAATATTCATAAGAGA-------ATGATCCCCATCACCAATCAAAACATCATTTA i dasNov3.JH568349 C 0 I 648 e otoGar3.GL873602 8582196 249 + 8790067 I a score=20785.000000 s hg38.chr4_KI270787v1_alt 9066 3 + 111943 AAA- s panTro5.chr4 119571381 3 - 194502333 AAA- i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987661 3 - 195804263 AAA- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418743 3 - 17550833 AAA- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294189 3 - 118206036 AAA- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111497892 3 - 190429646 AAA- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666006 3 - 189454096 AAA- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233797 3 + 26754465 AAA- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136127 3 - 5137665 AAA- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43046 3 - 60632 AAA- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951351 3 + 2427316 AAA- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239536 3 + 1448899 AAA- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978323 3 - 190850796 AAA- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140322 3 - 15139346 AAA- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6929310 3 - 7304997 AAA- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9340819 3 - 11631747 AAA- i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76391660 4 + 151834684 CCAT i mm10.chr5 C 0 C 0 s canFam3.chr13 47945158 3 + 63241923 CAT- i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4051859 648 - 5279953 I e otoGar3.GL873602 8582196 249 + 8790067 I a score=677612.000000 s hg38.chr4_KI270787v1_alt 9069 64 + 111943 ATTCAAGGCAGAT---AATCTATTTTTGTTTTGAGTCTTAAAAAATTTATCATAAT---------------GGC-AAAAATGA s panTro5.chr4 119571384 64 - 194502333 ATTCAAGGCAGAT---AATCTATTTTTGTTTTGTGTCTTAAAAAATTTATCATAAT---------------GGC-AAAAATGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987664 64 - 195804263 ATTCAAGGCAGAT---AATCTATTTTTGTTTTGTGTCTTAAAAAATTTATCATAAT---------------GGC-AAAAATGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418746 64 - 17550833 ATTCAAGGCAGAT---AATCTATTTTTGTTTTGAGTCTTAAAAAATTTATCATAAT---------------GGC-AAAAATGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294192 79 - 118206036 ATCCAAGGCAGAT---AATCTATTTTTGTTTTGAGTCTTAAAAAATTTATCACAATGGCAAAAATGAATGAGGC-AAAAATGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111497895 64 - 190429646 ATCCAAGGCAGAT---AATCCATTTTTGTTTTGAGTCTTAAAAGATTTATCATAAT---------------GGC-AAAAATAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666009 64 - 189454096 ATCCAAGGCAGAT---AATCCATTTTTGTTTTGAGTCTTAAAAGATTTATCATAAT---------------GGC-AAAAATAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233800 64 + 26754465 ATCCAAGGCAGAT---AATCCATTTTTGTTTTGAGTCTTAAAAGATTTATCATAAT---------------GGC-AAAAATAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136130 64 - 5137665 ATCCAAGGCAGAT---AATCCATTTTTGTTTTGAGTCTTAAAAGATTTATCATAAT---------------GGC-AAAAATAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43049 64 - 60632 ATCCAAGGCAGAT---AATCCATTTTTGTTTTGAGTCTTAAAAGATTTATCATAAT---------------GGC-AAAAATAT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951354 64 + 2427316 ATCCAAGGCAGAT---AATCCATTTTTGTTTTGAGTCTTAAAAGATTTATCATAAT---------------GGC-AAAAATAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239539 63 + 1448899 ATCCAA-GCAGAT---AATCCATTTTTGTTTTGAGTCTTAAAAGGTTTATCATAAT---------------GGC-AAAAATAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978326 58 - 190850796 ATCCAAGGCAGAT---CATCTAT-----TTTTGAGTTTTCAAAGATTTATTAT-AC---------------GGC-AAAAATGC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140325 63 - 15139346 ATCCAAGGCAGAT---CACCTATTTTTGTTTTGAGTTTTAAAAGATTTATCAT-AT---------------GGC-AAAAATGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6929313 64 - 7304997 ATCCAAGGCAGAT---CATCTATTTTTGTTTTGAGTTTTAAAAGATTCATCAT-AT---------------GGCAAAAAATGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9340822 63 - 11631747 ATTCAAGGCAGAT---CATCTATTTTTGTTTTGAGTTTTAAAAGATTTATCAT-AT---------------GGC-AAAAATGA i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76391664 61 + 151834684 ACCCAAGCAGGGG---GATCTATTTTTATT---AAGCTTAAGAAAGTTATTCCAAT---------------TGC-AAAAGTTA i mm10.chr5 C 0 C 0 s canFam3.chr13 47945161 61 + 63241923 ATCCAAAGTAGAT---AATTTATCTTTGTT---AACTTTAAGAAATTCTTCCTAAT---------------GGC-AAAAATAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4052507 64 - 5279953 ATCCAAGAGAGATAGCAATCAATTT---TTTTAAGCTTTAGGAAATTCTTCCTAAT---------------GAC-AAAAATTA i dasNov3.JH568349 I 648 I 354 e otoGar3.GL873602 8582196 249 + 8790067 I a score=423326.000000 s hg38.chr4_KI270787v1_alt 9133 35 + 111943 ATGATTGTTACTTTTGGGGACAGCCAGACTTGAGC s panTro5.chr4 119571448 35 - 194502333 ATGATTGTTACTTTTGGGGACAGCCAGACTTGAGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987728 35 - 195804263 ATGATTGTTACTTTTGGGGACAGCCAGACTTGAGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418810 35 - 17550833 ATGATTGTTACTTTTGGGGACAGCCAGACTTGAGC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294271 35 - 118206036 ATGATTATTACTTTTGGGGATAGCCAGACTTGAGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111497959 35 - 190429646 ATGATTATTACTTTTGGGGATAGCCAGACTTGAGC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666073 35 - 189454096 ATGATTATTACTTTTGGGGATAGCCAGACTTGAGC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233864 35 + 26754465 ATGATTATTACTTTTGGGGATAGCCAGACTTGAGC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136194 35 - 5137665 ATGATTATTACTTTTGGGGATAGCCAGACTTGAGC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43113 35 - 60632 ATGATTATTACTTTTGGGGATAGCCAGACTTGAGC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951418 35 + 2427316 ATGATTATTACTTTTGGAGATAGCCAGACTTGAGC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239602 35 + 1448899 ATGATTATTACTTTTGGGGATAGCCAGACTTGAGC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978384 34 - 190850796 ATGACTATTACTTT-GGGGATAGCCATACTTGAGC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140388 35 - 15139346 ATGATTATTACTTTGGGGGATAGTCATACTTGAGC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6929377 35 - 7304997 ATGATTATTACTTTGTGGGATAGCCAGACTTGAGC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9340885 35 - 11631747 ATGATTATTACTTTGGGGGATAGCTATACTTGAGC i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76391725 35 + 151834684 ATGCTTACTTTTTGGTAAGACAGTCAGGTGTTAGC i mm10.chr5 C 0 C 0 s canFam3.chr13 47945222 35 + 63241923 ACAATTATGACCTTGGGCGATAGTGGCACTTGAGC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4052925 35 - 5279953 ATAATTATTACTTTTTGGGATAGTGGGAACTGAGC i dasNov3.JH568349 I 354 C 0 e otoGar3.GL873602 8582196 249 + 8790067 I a score=272998.000000 s hg38.chr4_KI270787v1_alt 9168 19 + 111943 TAGGACTTGCAGGACAGAA s panTro5.chr4 119571483 19 - 194502333 TAGGACTTGCAGGACAGAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987763 19 - 195804263 TAGGACTTGCAGGACAGAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418845 19 - 17550833 TAGGACTTGCAGGACAGAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294306 19 - 118206036 TAGGACTTGCAGGACAGAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111497994 19 - 190429646 TAGGACTTGCAGGACAGAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666108 19 - 189454096 TAGGACTTGCAGGACAGAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233899 19 + 26754465 TAGGACTTGCAGGACAGAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136229 19 - 5137665 TAGGACTTGCAGGACAGAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43148 19 - 60632 TAGGACTTGCAGGACAGAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951453 19 + 2427316 TAGGACTTGCAGGACAGAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239637 19 + 1448899 TAGGACTTGCAGGACAGAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978418 19 - 190850796 TAGGACTTGCAGTACAGAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140423 15 - 15139346 TAGGACTTGCAGGAC---- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6929412 19 - 7304997 TAGGACTTGCAGGACAGAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9340920 19 - 11631747 TAGGACTTGCAGTACAGAA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8582445 19 + 8790067 tggaaCTTGCAGGACAGAA i otoGar3.GL873602 I 249 C 0 s mm10.chr5 76391760 19 + 151834684 AGGAACACACAGGGCAAAG i mm10.chr5 C 0 C 0 s canFam3.chr13 47945257 19 + 63241923 TAGAACTAGCAGGTCACAA i canFam3.chr13 C 0 I 4 s dasNov3.JH568349 4052960 19 - 5279953 TGGAACTTGCAGGACAGAA i dasNov3.JH568349 C 0 C 0 a score=35232.000000 s hg38.chr4_KI270787v1_alt 9187 4 + 111943 AAAG s panTro5.chr4 119571502 4 - 194502333 AAAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987782 4 - 195804263 AAAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418864 4 - 17550833 AAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294325 4 - 118206036 AAGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498013 4 - 190429646 AAGC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666127 4 - 189454096 AAGC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233918 4 + 26754465 AAGC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136248 4 - 5137665 AAGC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43167 4 - 60632 AAGC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951472 4 + 2427316 AAGC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239656 4 + 1448899 AAGC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978437 4 - 190850796 AAGC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140438 3 - 15139346 -AGC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6929431 4 - 7304997 AAGT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9340939 4 - 11631747 AAGC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8582464 4 + 8790067 AAGC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76391779 4 + 151834684 AAGT i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4052979 4 - 5279953 AATT i dasNov3.JH568349 C 0 C 0 e canFam3.chr13 47945276 4 + 63241923 I a score=436667.000000 s hg38.chr4_KI270787v1_alt 9191 29 + 111943 TCTTGCTCAG------GAGGGCAGATGATCTAAA--T s panTro5.chr4 119571506 29 - 194502333 TCTTGCTCAG------GAGGGCAGATGATCTAAA--T i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987786 29 - 195804263 TCTTGCTCAG------GAGGGCAGATGATCTAAA--T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418868 29 - 17550833 TCTTGCTCAG------GAGGGCAGGTGATCTAAA--T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294329 29 - 118206036 TATTGCTCAG------GAGGGCAGATGATCTAAA--T i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498017 29 - 190429646 TCTTGCTCAG------GAGGGTAGATGATCTAAA--T i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666131 29 - 189454096 TCTTGCTCAG------GAGGGTAGATGATCTAAA--T i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233922 29 + 26754465 TCTTGCTCAG------GAGGGTAGATGATCTAAA--T i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136252 29 - 5137665 TCTTGCTCAG------GAGGGTAGATGATCTAAA--T i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43171 29 - 60632 TCTTGCTCAG------GAGGGTAGATGATCTAAA--T i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951476 29 + 2427316 TCTTGCTCAG------GAGGGTAGATGATCTAAA--T i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239660 29 + 1448899 TCTTGCTCAG------AAGGGTAGATGATCTAAA--T i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978441 29 - 190850796 TCTTGCTCAG------GAGGGCAGATGATCTAAA--T i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140441 29 - 15139346 TCTTGCTCAG------GAGGGCAGATGATCTAAA--T i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6929435 29 - 7304997 TCTTGCTCAG------GAGGGCAGATGATCTAAA--T i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9340943 29 - 11631747 TCTTGCTCAG------GAGGGCAGATGATCTAAA--T i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8582468 31 + 8790067 TCTTGCTCAG------GAGGGCAGATGACCTAAAAGT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76391783 35 + 151834684 TCTTACTTGGGGGGCAGAGGGAAAATAGTCTGAA--T i mm10.chr5 C 0 C 0 s canFam3.chr13 47945280 29 + 63241923 TTTTGCTCAG------GAGGGCAGATGATCTAAA--T i canFam3.chr13 I 4 C 0 s dasNov3.JH568349 4052983 29 - 5279953 TCTTTTGAAG------GAAGGTAGATGATCTAAA--A i dasNov3.JH568349 C 0 C 0 a score=25248.000000 s hg38.chr4_KI270787v1_alt 9220 3 + 111943 TAA s panTro5.chr4 119571535 3 - 194502333 TAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987815 3 - 195804263 TAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418897 3 - 17550833 TAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294358 3 - 118206036 TAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498046 3 - 190429646 TAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666160 3 - 189454096 TAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233951 3 + 26754465 TAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136281 3 - 5137665 TAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43200 3 - 60632 TAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951505 3 + 2427316 TAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239689 3 + 1448899 TAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978470 3 - 190850796 TAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140470 3 - 15139346 TAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6929464 3 - 7304997 TAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9340972 3 - 11631747 TAA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8582499 2 + 8790067 CA- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76391818 3 + 151834684 TTA i mm10.chr5 C 0 C 0 e dasNov3.JH568349 4053012 0 - 5279953 C e canFam3.chr13 47945309 0 + 63241923 C a score=84627.000000 s hg38.chr4_KI270787v1_alt 9223 19 + 111943 TTTCC--Attttctttttttt s panTro5.chr4 119571538 19 - 194502333 tttcc--tttttttttttttt i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987818 19 - 195804263 TTTCC--Attttttttttttt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418900 19 - 17550833 TTTCC--ATCttttttttttt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294361 19 - 118206036 TTTCC--Attttcttttttct i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498049 10 - 190429646 tttcc-----------ttttt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666163 10 - 189454096 tttcc-----------ttttt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233954 9 + 26754465 tttcc------------tttt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136284 9 - 5137665 tttcc------------tttt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43203 10 - 60632 tttcc-----------ttttt i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951508 9 + 2427316 tttcc------------tttt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239692 21 + 1448899 tttcctttttttttttttttt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978473 19 - 190850796 TTTCC--Attttcttttcttt i calJac3.chr3 C 0 I 3 s saiBol1.JH378162 8140473 19 - 15139346 TTTCC--Attttcttttcttt i saiBol1.JH378162 C 0 I 35 s cebCap1.NW_016107439v1 6929467 19 - 7304997 TATCC--Attttcttttcttt i cebCap1.NW_016107439v1 C 0 I 162 s aotNan1.NW_018493494v1 9340975 19 - 11631747 TTTCC--Attttcttttcttt i aotNan1.NW_018493494v1 C 0 I 10 s mm10.chr5 76391821 19 + 151834684 TTCCC--ATTTTATTAATTTT i mm10.chr5 C 0 C 0 e dasNov3.JH568349 4053012 0 - 5279953 C e otoGar3.GL873602 8582501 0 + 8790067 C e canFam3.chr13 47945309 0 + 63241923 C a score=53398.000000 s hg38.chr4_KI270787v1_alt 9242 13 + 111943 ----ttttttt-----tttgag s panTro5.chr4 119571557 13 - 194502333 ----ttttttt-----tttgag i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987837 9 - 195804263 ----tttttgt---------ag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418919 9 - 17550833 ----ttttttg---------ag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294380 18 - 118206036 ----tttttttttttttttgag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498059 9 - 190429646 ----ttttttg---------ag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666173 9 - 189454096 ----ttttttg---------ag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233963 9 + 26754465 ----ttttttg---------ag i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136293 9 - 5137665 ----ttttttg---------ag i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43213 9 - 60632 ----ttttttg---------ag i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951517 9 + 2427316 ----ttttttg---------ag i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239713 9 + 1448899 ----ttttttg---------ag i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978495 9 - 190850796 ----ttttttg---------ag i calJac3.chr3 I 3 C 0 s saiBol1.JH378162 8140527 9 - 15139346 ----ttttttg---------ag i saiBol1.JH378162 I 35 C 0 s aotNan1.NW_018493494v1 9341004 9 - 11631747 ----ttttttg---------ag i aotNan1.NW_018493494v1 I 10 C 0 s mm10.chr5 76391840 13 + 151834684 CAGTATTAATG---------AG i mm10.chr5 C 0 I 171 e dasNov3.JH568349 4053012 0 - 5279953 C e cebCap1.NW_016107439v1 6929486 162 - 7304997 I e otoGar3.GL873602 8582501 0 + 8790067 C e canFam3.chr13 47945309 0 + 63241923 C a score=137551.000000 s hg38.chr4_KI270787v1_alt 9255 19 + 111943 atggaatgctgctgtgttg s panTro5.chr4 119571570 19 - 194502333 atggaatgctgctgtgttg i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987846 19 - 195804263 atggaatgctgctgtgttg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418928 19 - 17550833 atggaatgctgctgtgtcg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294398 19 - 118206036 atggaatgctgctctgtcg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498068 19 - 190429646 acggagtgctgctctgtcg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666182 19 - 189454096 acggagtgctgctctgtca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233972 19 + 26754465 acggagtgctgctctgtcg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136302 19 - 5137665 atggagtgctgctctgtcg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43222 19 - 60632 acggagtgctgctctgtcg i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951526 19 + 2427316 acggagtgctgctctgtcg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239722 19 + 1448899 acagagtgctgctctgttg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978504 19 - 190850796 gtagtgtgctgctctgtca i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140536 19 - 15139346 gtagagtgcttctctgtca i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9341013 19 - 11631747 aaagagtgcttctctgtca i aotNan1.NW_018493494v1 C 0 C 0 e mm10.chr5 76391853 171 + 151834684 I e dasNov3.JH568349 4053012 0 - 5279953 C e cebCap1.NW_016107439v1 6929486 162 - 7304997 I e otoGar3.GL873602 8582501 0 + 8790067 C e canFam3.chr13 47945309 0 + 63241923 C a score=2454416.000000 s hg38.chr4_KI270787v1_alt 9274 260 + 111943 cccagactggagtgcagttgtgtgatctcggctcactgcaaacttcaccttctgagttcaagtgattctcctgccacagcctcccaagtaactgggactacaggtgcccgcca-tcacacctggctaac--ttgtatttttagtagagatggtgtttcgccatgttggtcaggctggtctcgaactcctgatctcaggtgat-ccactcgcctcacagcccctcaaagtgctgggattacaggcatgagtcatcgcacctggcc s panTro5.chr4 119571589 261 - 194502333 cccagactgaagtgcagttgtgtgatctcggctcactgcaaacttcaccttctgagttcaagtgattctcctgccacagcctcccaagtaactgggactacaggtgcccgccattcacacctggctaac--ttgtatttttagtagagatggcgtttcgccatgttggtcaggctggtctcgaactcctgacctcaggtgat-ccactcgcctcacagcccctcaaagtgctgggattacaggcatgagtcatcgcacctggcc i panTro5.chr4 C 0 C 0 s panPan2.chr4 120987865 261 - 195804263 cccagactggagtgcagttgtgtgatctcggctcactgcaaacttcaccttctgagttcaagtgattctcctgccacagcctcccaagtaactgggactacaggtgcccgccattcacacctggctaac--ttgtatttttagtagagatggcgtttcgccatgttggtcaggctggtctcgaactcctgacctcaggtgat-ccactcgcctcacagcccctcaaagtgctgggattacaggcatgagtcatcgcacctggcc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4418947 260 - 17550833 cccagactggagtgcagttgtgtgatctcagctcactgcaaacttcacctcctgagttcaagtgattctcctgccacagcctcctaagtaactgggactacaggtgcccgcca-tcacacctggctaac--ttgtatttttagtagagatggcgtttcgccatgttggtcaggctggtctcgaactcctgacctcaggtgat-ccactcacctcacagcccctcaaagtgctgggattacaggcatgagtcatcgcacctggcc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294417 247 - 118206036 cccagactggagtgcagttgcgcgatctcggctcactgcaacctttacctcctcggttcaagtgattcttctgccgcagcctcc-------------ctacaggtgcctgcca-tcacacccagctaac--ttgtatttttagtagagatggcgtttcgccgtgttggtcaggctggtctcaaactcctgacctcaggtgat-ccacccgcctcacagcccctcaaagtgctgggattacaggcatgagtcatcacacctggcc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498087 257 - 190429646 tccagactggagtgcagttgtgtgatcttggctcactgcaaccttcacct-cagggttcaagtgattctcctgccacagcctcccaactaactgggactacaggtgcctgcca-tcacatctggccaac--ttgtatttttagtagagacagcattttgccatgttggtcaggccggtctcaaactcctgacctcaggtgat-ccacccgcct--cagtccctcaaagtgctgggattacaggcaggagtcatcgtgcctggcc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666201 257 - 189454096 tccagactggagtgcagttgtgtgatcttggctcactgcaaccttcacct-cagggttcaagtgattctcctgccacagcctcccaactaactgggactacaggtgcctgcca-tcacatctggccaac--ttgtatttttagtagagacagcattttgccatgttggtcaggccggtctcaaactcctgacctcaggtgat-ccacccgcct--cagtccctcaaagtgctgggattacaggcaggagtcatcgtgcctggcc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13233991 257 + 26754465 tccagactggagtgcagttgtgtgatcttggctcactgcaaccttcacct-cagggttcaagtgattctcctgccacagcctcccaactaactgggactacaggtgcctgcca-tcacatctggccaac--ttgtatttttagtagagacagcattttgccaggttggtcaggccggtctcaaactcctgacctcaggtgat-ccacccgcct--cagtccctcaaagtgctgggattacaggcaggagtcatcgtgcctggcc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136321 257 - 5137665 tccagactggagtgcagttgtgtgatcttggctcactgcaaccttcacct-cagggttcaagtgattctcctgccacagcctcccaactaactgggactacaggtgcctgcca-tcacatctggccaac--ttgtatttttagtagagatagcattttgccatgttggtcaggctggtttcgaactcctgacctcaggtgat-ccacccgcct--cagtccctcaaagtgctgggagtacaggcaggagtcatcgtgcctggcc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43241 257 - 60632 tccagactggagtgcagttgtgtgatcttggctcactgcaaccttcacct-cagggttcaagtgattctcctgccacagcctcccaactaactgggactacaggtgcctgcca-tcacatctggccaac--ttgtatttttagtagagacagcattttgccatgttggtcaggctggtctcgaactcctgacctcaggtgat-ccatccgcct--cactccctcaaagtgctgggattacaggcatgagtcatcgtgcctggcc i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951545 257 + 2427316 tccagactggagtgcagttgtgtgatcttggctcactgcaaccttcacct-cagggttcaagtgattctcctgccacagcctcccaactaactgggactacaggtgcctgcca-tcacatctggccaac--ttgtatttttagtagagacagcattttgccatgttggtcaggctggtctcgaactcctgacctcaggtgat-ccacccgcct--cagtccctcaaagtgctgggattacaggcaggagtcatcgtgcctggcc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239741 257 + 1448899 cccagactggagtgcagttgtgtgatcttggctcactgcacccttcacct-cagggttcaagtgattctcctgccacagcctcccaactaactgggactacaggtgcctacca-tcacatctggccaac--ttgtatttttagtagagacagcattttgccatgttggtcaggctggcctcgaactcctgacctcaagtgat-ccacccgcct--cagtccctcaaagtgctgggattacaggcatgagtcatcgtgcctggcc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978523 259 - 190850796 cccagcctggagtgcagttgtgtgatctcagctcactgcaaccttcacttcctgggttcaagtgattgtcctgcctcagcctcccaagtaactaggactatagatgtccgcca-cgacacccagctgacttttgtgttttt-gtagagatggggtttcaccatgttggtcagactggtcttgaactcctgacctcaggtgat-ccacccgcct--cagctcctcaaagtgctgagattacaggtatgagccattgagtctggcc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140555 260 - 15139346 cccagcctggagtgcagttgtgtgatctcggctcactgcaaccttcacttcctgggttcaagtgattcttctgcctcagcctcccaagtaactgggactatagatgcccgcca-ccacacccggctaacttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgat-ccacctgcct--cagctcctcaaagtgctgggattacaggcatgagctattgtacctggcc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6929648 261 - 7304997 cccagcctgaagtatagttgtgtgatcctggctcactgcagccttcacttcctgggttcaagtgattctcctgcctcagcttcccaaggaactgggactatagatgcccgcca-ccacacctggctaacttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctggcctcaggtgatcccacccacct--cagctcctcaaagtgctgggattacaggcatgagccattgtgcctggcc i cebCap1.NW_016107439v1 I 162 C 0 s aotNan1.NW_018493494v1 9341032 260 - 11631747 cccagcctggagtgcagttgtgtgatctcggttcactgcaaccttcacttcctgggttcaagtgattctcctgcctcagcctcccaagtaactaggactatagatgcctgcca-ccacacccggctaacttttgtatttttagtagggatgaggtttcactatgttggccaggctggtcttgaactcctgacctcaggtgat-ccaccggcct--cagctcctcaaagtgctgggattacaggcatgagtcattgtgcctggcc i aotNan1.NW_018493494v1 C 0 C 0 e mm10.chr5 76391853 171 + 151834684 I e dasNov3.JH568349 4053012 0 - 5279953 C e otoGar3.GL873602 8582501 0 + 8790067 C e canFam3.chr13 47945309 0 + 63241923 C a score=41769.000000 s hg38.chr4_KI270787v1_alt 9534 3 + 111943 TAA s panTro5.chr4 119571850 3 - 194502333 TAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988126 3 - 195804263 TAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419207 3 - 17550833 TAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294664 3 - 118206036 TAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498344 3 - 190429646 TAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666458 3 - 189454096 TAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13234248 3 + 26754465 TAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136578 3 - 5137665 TAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43498 3 - 60632 TAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951802 3 + 2427316 TAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1239998 3 + 1448899 TAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978782 3 - 190850796 TAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140815 3 - 15139346 TAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6929909 3 - 7304997 TAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341292 3 - 11631747 TAA i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47945309 3 + 63241923 TAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053012 3 - 5279953 TAA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76391853 171 + 151834684 I e otoGar3.GL873602 8582501 0 + 8790067 C a score=620971.000000 s hg38.chr4_KI270787v1_alt 9537 44 + 111943 TTTCCATTTTCTTAGTAACCAATATGCATGAGTCTTATTTTCTA s panTro5.chr4 119571853 44 - 194502333 TTTCCATTTTCTTAGTAACCAACATGCATGAGTCTTATTTTCTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988129 44 - 195804263 TTTCCATTTTCTTAGTAACCAACATGCATGAGTCTTATTTTCTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419210 44 - 17550833 TTTCCATTTTCTTAGTAACCAATATGCATGAGTCTTATTTTCTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294667 44 - 118206036 TTTCCATTTTCTTAGCAACCAATATGCATGAGTCTTATTTTCTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498347 44 - 190429646 TTTCCATTTTCTTAGTAACCAATATGCATGAGTCTTATTTTCTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666461 44 - 189454096 TTTCCATTTTCTTAGTAACCAATATGCATGAGTCTTATTTTCTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13234251 44 + 26754465 TTTCCATTTTCTTAGTAACCAATATGCATGAGTCTTATTTTCTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136581 44 - 5137665 TTTCCATTTTCTTAGTAACCAATATGCATGAGTCTTATTTTCTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43501 44 - 60632 TTTCCATTTTCTTAGTAACCAATATGCATGAGTCTTATTTCCTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951805 44 + 2427316 TTTCCATTTTCTTAGTAACCAATATGCATGAGTCTTATTTTCTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240001 44 + 1448899 TTTCCATTTTCTTAGTAACCAATATGCATGAGTCTTATTTTCTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978785 44 - 190850796 TTTCCATTTTCTTAATAACCAACATGCATGAGTCTTATTTTCTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140818 44 - 15139346 TTTCCATTTTCTTAATAACCAATATGCATGAGTCTTATTTTCTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6929912 44 - 7304997 Tttccattttcttaataaccaatatgcatgagtcttattttcta i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341295 44 - 11631747 Tttccattttcttaataaccagtatgcatgagtcttattttcta i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8582501 44 + 8790067 TTCCCATTTTGTTAGTGACCATTGTAACTGGGTCTTATTTTCCA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47945312 44 + 63241923 TTCCCATGTACTTAGTAACCAATATGCATGAATCTTATTTACTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053015 44 - 5279953 TTTCCATTTACTTAGTAAACAACATGAATGAGTCTTATTCACTA i dasNov3.JH568349 C 0 I 1 e mm10.chr5 76391853 171 + 151834684 I a score=15300.000000 s hg38.chr4_KI270787v1_alt 9581 1 + 111943 C s panTro5.chr4 119571897 1 - 194502333 C i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988173 1 - 195804263 C i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419254 1 - 17550833 C i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294711 1 - 118206036 C i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498391 1 - 190429646 C i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666505 1 - 189454096 C i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13234295 1 + 26754465 C i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136625 1 - 5137665 C i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43545 1 - 60632 C i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951849 1 + 2427316 C i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240045 1 + 1448899 C i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978829 1 - 190850796 C i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140862 1 - 15139346 C i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6929956 1 - 7304997 c i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341339 1 - 11631747 c i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8582545 1 + 8790067 C i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47945356 1 + 63241923 C i canFam3.chr13 C 0 C 0 e mm10.chr5 76391853 171 + 151834684 I e dasNov3.JH568349 4053059 1 - 5279953 I a score=804538.000000 s hg38.chr4_KI270787v1_alt 9582 67 + 111943 CTCACACATGAGTCTCATTTCTTAACTCATGAGACAAATCTTTATACATTTTTCTTAAGTTATAGAG s panTro5.chr4 119571898 67 - 194502333 CTCACACATGAGTCTCATTTCTTAACTCATGAGACAAATCTTTATACATTTTTCTTAAGTTATAGAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988174 67 - 195804263 CTCACACATGAGTCTCATTTCTTAACTCATGAGACAAATCTTTATACATTTTTCTTAAGTTATAGAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419255 67 - 17550833 CTCACACATGATTCTCATTTCTTAACTCATGAGACAAATCTTTATACATTTTTCTTAAGTCATAGAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294712 67 - 118206036 CTCATACATGATTCTCATTTCTTAACTCATGAGACAAATCTTTATAACTTTTTCTTAAGTTGTAGAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498392 67 - 190429646 CTCATACATGATTCTCAGTTCTTAACTCACGAGAAAAATCTTTATACATTTTTCTTAAGTTATAGAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666506 67 - 189454096 CTCATACATGATTCTCAGTTCTTAACTCACGAGAAAAATCTTTATACATTTTTCTTAAGTTATAGAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13234296 67 + 26754465 CTCATACATGATTCTCAGTTCTTAACTCACGAGAAAAATCTTTATACATTTTTCTTAAGTTATAGAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136626 67 - 5137665 CTCATACATGATTCTCAGTTCTTAACTCACGAGAAAAATCTTTATACATTTTTCTTAAGTTATAGAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43546 67 - 60632 CTCATACATGATTCTCAGTTCTTAACTCACGAGAAAAATCTTTATACATTTTTCTTAAGTTATAGAG i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951850 67 + 2427316 CTCATACATGATTCTCAGTTCTTAACTCACGAGAAAAATCTTTATATATTTTTCTTAAGTTATAGAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240046 67 + 1448899 CTCATACATAATTCTCAGTTCTTAACTCATGAGAAAAATCTTTATACATTTTTCTTAAGTTATAGAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978830 67 - 190850796 CTCATACATGATTCTCATTCCTTAACTCATGAGACACATTTTTATACATTTTGCTTAAATTGTAAAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140863 66 - 15139346 CTCATACATGATTCTCATTCCTTAACTCGTGAGACACATTTCTATACATTTTTCTTAACTTTTAGA- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6929957 66 - 7304997 ttcatacatgattctcattccttaactcatgagacacatttttacccattttt-ttaaattgtagag i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341340 67 - 11631747 ctcatacatgattctcattccttaacacgtgagacacatttttatacatttttcttaaattgtagag i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8582546 67 + 8790067 CCCATATATAACTCTCATTCCTTAACTCATCAGATGAATTTTTACACATTTTTCTTAAGTCATGGTA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47945357 66 + 63241923 C-CACATATAATTCTCATTCCTTAACACATGAGACAAATTCTTATACATTCCTCCTAAGTTATGGAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053060 66 - 5279953 CCCATACAAGATTCTCATTGCTTAGC-CACAAAATAAATTTTCACACATTTCTCTTAAGTTATAGAA i dasNov3.JH568349 I 1 C 0 e mm10.chr5 76391853 171 + 151834684 I a score=1846928.000000 s hg38.chr4_KI270787v1_alt 9649 123 + 111943 CCCAGAACTGGACAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTCATTTCCATACAGGAAGGCGAACACCTAAATTAAGCAGAAACTTACAAACCAGTTTGAGGAGCC----------AGCACCCAGA s panTro5.chr4 119571965 123 - 194502333 CCCAGAACTGGACAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTCATTTCCATACAGGAAGGCGAACACCTAAATTAAGCAGAAACTTACAAACCAGTTTGAGGAGCC----------AGCACCCAGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988241 123 - 195804263 CCCAGAACTGGACAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTCATTTCCATACAGGAAGGCGAACACCTAAATTAAGCAGAAACTTACAAACCAGTTTGAGGAGCC----------AGCACCCAGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419322 123 - 17550833 CCCAGAACTGGACAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTCATTTCCATACAGGAAGGCAAACACTTAAATTAAGCAGAAACTTACAAACCAGTTTGAGGAGCC----------AGCACCCAGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294779 123 - 118206036 CCCAGAACGGGACAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTCATTTCCATACAGGAAGGCAAACACCTAAATTAAGCAGAAACCTACAAACCAGTTTGAGGAGCC----------AGCACCCAGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498459 123 - 190429646 CCCAGAACTAGACAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTCATTTCTATACAGGAAGGCAAACACCTAAATTAAGCAGAAACCTACAAACCAGTTTGAGGAGAC----------AGCACCCAGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666573 123 - 189454096 CCCAGAACTAGACAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTCATTTCTATACAGGAAGGCAAACACCTAAATTAAGCAGAAACCTACAAACCAGTTTGAGGAGAC----------AGCACCCAGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13234363 123 + 26754465 CCCAGAACTAGACAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTCATTTCTATACAGGAAGGCAAACACCTAAATTAAGCAGAAACCTACAAACCAGTTTGAGGAGAC----------AAAACCCAGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136693 123 - 5137665 CCCAGAACTAGACAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTCATTTCTATACAGGAAGGCAAACACCTAAATTAAGCAGAAACCTACAAACCAGTTTGAGGAGAT----------AGCACCCAGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43613 123 - 60632 CCCAGAACTAGACAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTCATTTCTATACAGGAAGGCAAACACCTAAATTAAGCAGAAACCTACAAACCAGTTTGAGGAGAT----------AGCACCCAGA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1951917 123 + 2427316 CCCAGAACTAGACAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTCATCTCTATACAGGAAGGCAAACACCTAAATTAAGCAGAAACCTACAAACCAGTTTGAGGAGAC----------AGCACCCAGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240113 123 + 1448899 CCCAGAACTAGACAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTCATCTCTATACAGGAAGAAAAACACCTAAATTAAGCAGAAACCTACAAACCAGTTTGAGGAGAC----------AGCACCCAGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52978897 123 - 190850796 CCCAGAACTGGATAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTCATTTCCATACAGGAAGGCAAACACCTAAATTAAGCAGAAACCTACAAACCAGTGTGAGGAGCC----------AGCACCCAGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8140929 123 - 15139346 CCCAGAACTGGACAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTCATTTCCATACAGGAGGGCAAACACCTAAATTAAGCAGAAACCTACAAACCAGTGTGAGGAGGC----------AGCACCCAGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930023 123 - 7304997 cccagaactggaGAGTTTATTGGTAAACATCTGTTCAGCATTGAGCTTTTATTTCCATACAGGAGGGCAAACACCTAAATTAAACAGAAACCTACAAATCAGTGTGAGGAGCC----------AGCACCCAGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341407 122 - 11631747 cccagaactggacAGTTTATTGGTAAACATCTGTTCAACATTGAGCTTTCA-TTCCATATAGGAGGGCAAACACCTAAATTTAACAGAAACCTACAAACCAGTGTGAGGAGTT----------AGCACCCAGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1752631 122 + 3286835 CCCAGAACTGGACAGTTTATTGGCTAACATCTGTTCAACATTGAGCTTTCACTTCCATACAGGAAAGTGAA-ACCTCAATTAAGCAGGAAGCTGCAAGTCAGTTTGCGCAGCC----------AGCACCCAGA i micMur3.chrUn_NW_017968520v1 N 0 C 0 s proCoq1.NW_012140747v1 1831873 122 + 4188776 CCCAGAACTGGACAGTTTATTGGCAAACATCTGTTCAACATTGAGCTTTCACTTCCATACAGGAAAGTGAA-ACCTCAATTAAGCAGGAAGCTGCAAGGCAGTTTGAGCAGCC----------AGTTCCCAGA i proCoq1.NW_012140747v1 N 0 C 0 s otoGar3.GL873602 8582613 100 + 8790067 CCCAGAA---------TTATTGGCAAACATCTGTGCAACATAGAGCTTTCATGTCCATACAGGAAAATAAA-CCCTGAACTCAGGTAGAAGCTGTG-------------AGCC----------AGATCCCAGA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47945423 123 + 63241923 CCTACAACAAGAAAGCTAGTTGGTAAACATCTGATCAATACTGAACTTCTACTTTCACACAGGAAAGTATACATCTGAAGTAAGTAGGAACCTGCAAATCAGTTTGAGGAGCC----------AACTCCCAGA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053126 124 - 5279953 CCCGGAACTGGACAGCTTATTGGTAAA-AT-------ACACTGAGTTTTCACTTCCATACAGGAAAATTAA-ACACAAATTGATCATAAATCTGAAGGACAGCTTGGGGAACCAGAAAACCTTAGCACCCAGA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76391853 171 + 151834684 I a score=1518302.000000 s hg38.chr4_KI270787v1_alt 9772 102 + 111943 AGCTAGGTGCCCCCATTATCTTTGAATCAAATGT------TTGTGGAGGGA--AAAATAGAATGTTTCAAAGTACTCACGTATGTGATTACATAACAAA-CAGTTTGGCTA s panTro5.chr4 119572088 102 - 194502333 AGCTAGGTGCCCCCATTATCTTTGAATCAAATGT------TTGTGGAGGGA--AAAATAGAATGTTTCAAAGTACTCACGTATGTGATTACATAACAAA-CAGTTTGGCTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988364 102 - 195804263 AGCTAGGTGCCCCCATTATCTTTGAATCAAATGT------TTGTGGAGGGA--AAAATAGAATGTTTCAAAGTACTCACGTATGTGATTACATAACAAA-CAGTTTGGCTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419445 102 - 17550833 AGCTAGGTGCCCCCATTATCTTTGAATCAAATGT------TTGTGGAGGGA--AAAATAGAATGTTTCAAAGTACTCATGTATGTGATTACATAACAAA-CAGTTTGGCTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69294902 102 - 118206036 AGCTAGGTGCCCCCATTATCTTTGAATCAAATAT------TTGTGGAGGGA--AAAATAGAATGTTTCAAAGTACACATGTATGTGATTACATAACAAA-CAGTTTGGCTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498582 102 - 190429646 AGCTAGGTGCCCCCATTATCTTTGAATCAAATGT------TTGTGAAGGGA--AAAATAGAATGCTTCAAAGTATGCCTGTATGTGATTGCATAACAAA-CAGTTTGGCTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666696 102 - 189454096 AGCTAGGTGCCCCCATTATCTTTGAATCAAATGT------TTGTGAAGGGA--AAAATAGAATGCTTCAAAGTATGCCTGTATGTGATTGCATAACAAA-CAGTTTGGCTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13234486 102 + 26754465 AGCTAGGTGCCCCCATTATCTTTGAATCAAATGT------TTGTGAAGGGA--AAAATAGAATGCTTCAAAGTACGCCTGTATGTGATTGCATAACAAA-CAGTTTGGCTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136816 102 - 5137665 AGCTAGGCGCCCCCATTATCTTTGAATCAAATGT------TTGTGAACGGA--AAAATAGAATGCTTCAAAGTACGCCTGTATGTGATTGCATAACAAA-CAGTTTGGCTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43736 102 - 60632 AGCTAGGTGCCCCCATTATCTTTGAATCAAATGT------TTGTGGAGGGA--AAAATAGAATGCTTCAAAGTACGCCTGTATGTGATTGCATAACAAA-CAGTTTGGCTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1952040 102 + 2427316 AGCTAGGTGCCCCCATTATCTTTGAATCAAATGT------TTGTGAAGGGA--AAAATAGAATGCTTCAAAGTACGCCTGTATGTGATTGCATAACAAA-CAGTTTGGCTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240236 102 + 1448899 AGATAGGTGCCCCCATTATCTTTGAATCAAATGT------TTGTGGAGGGA--AAAATAGAATGCTTCAAAGTACTCCTGTATGTGATTGCATAACAAA-CAGTTTGGCTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979020 102 - 190850796 AGCTAGGTACCCTCAATGTCTTTGAATCGAATGT------TTGTGGAGGGA--AAAATAGAATGTTTCAAAGTATGCATGTATATGTTTACATAGTAAA-CAGTTTGGCTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141052 102 - 15139346 AGCTTGGTGCCCCCAATATCTTTCAATCGAATGT------TTGTAGAGGGA--AAAATAGAATGTTTCAAAGTATGCATGTATATGTTTACGTAACAAA-GAGTTTGGCTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930146 102 - 7304997 AGCTAGGTGCCCCCAATATCTTTGAATCGAATGT------TTGTGGAGGGA--AAAATAGAATGTTTCAAAGTATGCATGTATGTGTTTACATAATAAA-CAGGTTGGCTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341529 102 - 11631747 AGCTAGGTGCCCCGAATACTTTTGAATCGAATGT------TTGTGGAGGGA--AAAATAGAATGTTTCAAAGTATGCATGTATATGTTTACATAACAAA-CAGTTTGGCTA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1752753 102 + 3286835 AGCTAGGTGCCTCTGACATCACTAAGTCAAATGT------TTGCTGAGGGA--AAAATAGAACGTTTCAAAGCGTGCATGTAAGTGATTATCTAACAAA-CAGTGTGGCTA i micMur3.chrUn_NW_017968520v1 C 0 I 22 s proCoq1.NW_012140747v1 1831995 102 + 4188776 AGCTAGATGCCCCTGATACCACTGAGTCAAATGT------TTGTTGAGGGA--AAAATAGAACTTTTCAAAGTGTGCACGTAAGTGACTATCTAACAAA-CAGTTTGGCTA i proCoq1.NW_012140747v1 C 0 I 23 s otoGar3.GL873602 8582713 108 + 8790067 AACTAGGTGCCCCTATTACCCCTGAGTCAAATAGAGGAAAATGTTAGGAGA--AAAATAGAAGATTCCAAAGTGTTCATGTATGTGATTATGTAACAAA-CAGTTTGGCTA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76392024 105 + 151834684 aaccacatgcccctaATGTTCCTGTATCAAATGT------TGGTTGGGGGAGGGGGACAGAGTTGTTCTAATACCTTGGGCATGAGATTATGAAACAACTTAGTAAGCCTG i mm10.chr5 I 171 I 4 s canFam3.chr13 47945546 98 + 63241923 AGCTAAGCGTCCCTAATGTGCCTGAAGGAAATAT------TTGTGGAGGTA--AAAATAGAACTTTCCAAACCGCGAGTGTATGTTATTATACAA-----CAATTTGGCTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053250 94 - 5279953 ACCTAGGCTTAACTAATGCCTCTGAATCAACCAT------TTATGGAGAGG--AAAATAGAAC--------CTGTGCGTGTATGTAATTATGTAACAAA-CAGCTTGGCTA i dasNov3.JH568349 C 0 C 0 a score=49523.000000 s hg38.chr4_KI270787v1_alt 9874 7 + 111943 CTGTAAA--------------- s panTro5.chr4 119572190 7 - 194502333 CTGTAAA--------------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988466 7 - 195804263 CTGTAAA--------------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419547 7 - 17550833 CTGTAAA--------------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295004 7 - 118206036 GTCTAAA--------------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498684 7 - 190429646 GTCTAAA--------------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666798 7 - 189454096 GTCTAAA--------------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13234588 7 + 26754465 GTCTAAA--------------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136918 7 - 5137665 GTCTAAA--------------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43838 7 - 60632 GTCTAAA--------------- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1952142 7 + 2427316 GTCTAAA--------------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240338 7 + 1448899 GTCTAAA--------------- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979122 7 - 190850796 GTCTAAG--------------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141154 7 - 15139346 GCCTAAG--------------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930248 7 - 7304997 GTCTAAG--------------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341631 7 - 11631747 GTCTAAG--------------- i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8582821 7 + 8790067 GTCTTAT--------------- i otoGar3.GL873602 C 0 I 15 s mm10.chr5 76392133 7 + 151834684 GTCTAGT--------------- i mm10.chr5 I 4 I 7 s canFam3.chr13 47945644 7 + 63241923 GTCTAAT--------------- i canFam3.chr13 C 0 I 10 s dasNov3.JH568349 4053344 22 - 5279953 ATCTAATGTCGTTATTACTAAT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1832097 23 + 4188776 I e micMur3.chrUn_NW_017968520v1 1752855 22 + 3286835 I a score=19110.000000 s hg38.chr4_KI270787v1_alt 9881 1 + 111943 T s panTro5.chr4 119572197 1 - 194502333 T i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988473 1 - 195804263 T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419554 1 - 17550833 T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295011 1 - 118206036 T i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498691 1 - 190429646 T i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666805 1 - 189454096 T i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13234595 1 + 26754465 T i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136925 1 - 5137665 T i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43845 1 - 60632 T i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1952149 1 + 2427316 T i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240345 1 + 1448899 T i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979129 1 - 190850796 T i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141161 1 - 15139346 T i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930255 1 - 7304997 T i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341638 1 - 11631747 T i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1752877 1 + 3286835 T i micMur3.chrUn_NW_017968520v1 I 22 C 0 s otoGar3.GL873602 8582843 1 + 8790067 T i otoGar3.GL873602 I 15 C 0 s mm10.chr5 76392147 1 + 151834684 T i mm10.chr5 I 7 C 0 s canFam3.chr13 47945661 1 + 63241923 T i canFam3.chr13 I 10 C 0 s dasNov3.JH568349 4053366 1 - 5279953 T i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1832097 23 + 4188776 I a score=585803.000000 s hg38.chr4_KI270787v1_alt 9882 42 + 111943 AAAA-TATTTTGGTCTTTTTCAACAACTTAAAACTTATTTTAA s panTro5.chr4 119572198 42 - 194502333 AAAA-TATTTTGGTCTTTTTCAACAACTTAAAACTTATTTTAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988474 42 - 195804263 AAAA-TATTTTGGTCTTTTTCAACAACTTAAAACTTATTTTAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419555 42 - 17550833 AAAA-TATTTTGGTCTTTTTCAACAACTTAAAACTTATTTTAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295012 42 - 118206036 AAAA-TATTTTGGTCTTTTTCAACAACCTAAAACTTATTTTAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498692 42 - 190429646 AAGACTGTTTTGGTCTTTTTCAACAACTTAAAACTTA-TTTAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110666806 42 - 189454096 AAGACTGTTTTGGTCTTTTTCAACAACTTAAAACTTA-TTTAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13234596 42 + 26754465 AAGACTGTTTTGGTCTTTTTCAACAACTTAAAACTTA-TTTAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4136926 42 - 5137665 AAAACTGTTTTGGTCTTTTTCAACAACTTAAAACTTA-TTTAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43846 42 - 60632 AAAACTGTTTTGGTCTTTTTCAACAACTTAAAACTTA-TTTAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1952150 42 + 2427316 AAAACTGTTTTGGTCTTTTTCAACAACTTAAAACTTA-TTTAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240346 42 + 1448899 AAAACTGTTTTGGTCTTTTTCAACAACTTAAAACTTA-TTTAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979130 42 - 190850796 AAAA-TATTTTGGTTTTTTTCAACAACTTAAAACTTATTTTAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141162 40 - 15139346 -AAA-TATTTTGG-TTTTTTCAACAACTTAAAACTTACTTTAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930256 42 - 7304997 AAAA-TATTTTGATTTTTTTCAACAACTTAAAACTTATTTTAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341639 42 - 11631747 AAAA-TATTTTGGTTTTTTTCAACAACTTAACACTTATTTTAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1752878 42 + 3286835 AAAA-TATTTTGACCTTTCTCAACAATTTAAAACTTATTTTAA i micMur3.chrUn_NW_017968520v1 C 0 I 301 s proCoq1.NW_012140747v1 1832120 42 + 4188776 AAAA-TATTTTGACCTTTGTCAACAATTTAAAACTTATTTTAA i proCoq1.NW_012140747v1 I 23 C 0 s otoGar3.GL873602 8582844 42 + 8790067 CAAA-TATCTTGAACTTTGTCAACaatttaaaacttattttaa i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76392148 40 + 151834684 AAAA-TATTGTGGTCTCTTTAGCC--CTTAAATTCTATTTTTA i mm10.chr5 C 0 C 0 s canFam3.chr13 47945662 38 + 63241923 AAGA-CATCTTAGCCTTCTTCAACAATTTCAAATT---ATTA- i canFam3.chr13 C 0 I 2 s dasNov3.JH568349 4053367 42 - 5279953 AAAA-TGTTTTGGCCTTCTTTGACTATCTAAAACTTATTTTTA i dasNov3.JH568349 C 0 C 0 a score=28311.000000 s hg38.chr4_KI270787v1_alt 9924 7 + 111943 GAATATT s panTro5.chr4 119572240 7 - 194502333 GAATATT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988516 7 - 195804263 GAATATT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419597 7 - 17550833 GAATATT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295054 6 - 118206036 GAATA-T i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111498734 7 - 190429646 GAATATt i rheMac8.chr5 C 0 I 1309 s macFas5.chr5 110666848 7 - 189454096 GAATATt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13234638 7 + 26754465 GAATATt i macNem1.NW_012012466v1 C 0 I 1325 s cerAty1.NW_012001307v1 4136968 7 - 5137665 GAATATt i cerAty1.NW_012001307v1 C 0 I 1320 s chlSab2.chr7_KE147969v1_random 43888 5 - 60632 GAATA-- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1952192 7 + 2427316 GAATATt i manLeu1.NW_012104388v1 C 0 I 1327 s colAng1.NW_012119221v1 1240388 5 + 1448899 GAATA-- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979172 7 - 190850796 GAAAATT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141202 7 - 15139346 GAAAATT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930298 7 - 7304997 GAAAACT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341681 7 - 11631747 GAAAATT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1832162 4 + 4188776 -AATT-- i proCoq1.NW_012140747v1 C 0 I 310 s otoGar3.GL873602 8582886 4 + 8790067 -aatt-- i otoGar3.GL873602 C 0 I 1 s mm10.chr5 76392188 7 + 151834684 AACTATT i mm10.chr5 C 0 I 2 s canFam3.chr13 47945702 5 + 63241923 AAATA-- i canFam3.chr13 I 2 I 2 s dasNov3.JH568349 4053409 5 - 5279953 AAATA-- i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1752920 301 + 3286835 I a score=29052.000000 s hg38.chr4_KI270787v1_alt 9931 5 + 111943 TTTTT s panTro5.chr4 119572247 5 - 194502333 TTTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988523 5 - 195804263 TTTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419604 5 - 17550833 TTTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295060 5 - 118206036 TTTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500050 5 - 190429646 TTTTT i rheMac8.chr5 I 1309 C 0 s macFas5.chr5 110666855 5 - 189454096 tttct i macFas5.chr5 C 0 I 1308 s macNem1.NW_012012466v1 13235970 5 + 26754465 TTTTT i macNem1.NW_012012466v1 I 1325 C 0 s cerAty1.NW_012001307v1 4138295 5 - 5137665 TTTTT i cerAty1.NW_012001307v1 I 1320 C 0 s chlSab2.chr7_KE147969v1_random 43893 5 - 60632 TTTTT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1953526 5 + 2427316 TTTTT i manLeu1.NW_012104388v1 I 1327 C 0 s colAng1.NW_012119221v1 1240393 5 + 1448899 TTTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979179 3 - 190850796 TTT-- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141209 3 - 15139346 TTT-- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930305 3 - 7304997 TTT-- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341688 3 - 11631747 TTT-- i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1832476 5 + 4188776 TTTTT i proCoq1.NW_012140747v1 I 310 C 0 s otoGar3.GL873602 8582891 5 + 8790067 ttttt i otoGar3.GL873602 I 1 C 0 s mm10.chr5 76392197 3 + 151834684 TTA-- i mm10.chr5 I 2 C 0 s canFam3.chr13 47945709 3 + 63241923 TTT-- i canFam3.chr13 I 2 C 0 s dasNov3.JH568349 4053414 5 - 5279953 TTTTT i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1752920 301 + 3286835 I a score=188518.000000 s hg38.chr4_KI270787v1_alt 9936 13 + 111943 CTGA-GCAAATGTA s panTro5.chr4 119572252 13 - 194502333 CTGA-GCAAATGTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988528 13 - 195804263 CTGA-GCAAATGTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419609 13 - 17550833 CTGA-GCAAATGTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295065 13 - 118206036 CTGA-GCAAATGTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500055 13 - 190429646 CTGA-GCAAATGTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668168 13 - 189454096 CTGA-GCAAATGTA i macFas5.chr5 I 1308 C 0 s macNem1.NW_012012466v1 13235975 13 + 26754465 CTGA-GCAAATGTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4138300 13 - 5137665 CTGA-GCAAATGTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43898 13 - 60632 CTGA-GCAAATGTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1953531 13 + 2427316 CTGA-GCAAATGTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240398 13 + 1448899 CTGA-GCAAATGTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979182 13 - 190850796 CTGA-GCGAATGTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141212 13 - 15139346 CTGA-GCGAACGTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930308 13 - 7304997 CTGA-GCGAATGTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341691 12 - 11631747 -TGA-GCGAATGTA i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1832481 12 + 4188776 CTGA-GCAAATAT- i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8582896 14 + 8790067 CTGATGTGGATGTA i otoGar3.GL873602 C 0 I 337 s mm10.chr5 76392200 12 + 151834684 -CGA-GCAAATATA i mm10.chr5 C 0 C 0 s canFam3.chr13 47945712 13 + 63241923 CTGA-TAAACTATA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053419 13 - 5279953 CTGA-CCAAATATA i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1752920 301 + 3286835 I a score=686823.000000 s hg38.chr4_KI270787v1_alt 9949 54 + 111943 GGTTCCACCAAAAATAAAATTTTATAATAATCATC-------CCCTTTTAACA-TAAAATAT s panTro5.chr4 119572265 54 - 194502333 GGTTCCGCCAAAAATAAAATTTTATAATAATCATC-------CCCTTTTAACA-TAAAATAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988541 54 - 195804263 GGTTCCGCCAAAAATAAAATTTTATAATAATCATC-------CCCTTTTAACA-TAAAATAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419622 54 - 17550833 GGTTCCGCCAAAACTAAAATTTTATAATAATCATC-------CCCTTTTAACA-TAAAATAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295078 54 - 118206036 GGTTCTGCTGAAAATAAAAGTTTATAATACTCATC-------CCCTTTTAACA-TAAAATAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500068 54 - 190429646 GGTTCTGCCAAGAACAAAATTTTATAATAATCATC-------CCCTTTGAACA-TAAAATAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668181 54 - 189454096 GGTTCTGCCAAGAACAAAATTTTATAATAATCATC-------CCCTTTGAACA-TAAAATAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13235988 54 + 26754465 GGTTCTGCCAAGAACAAAATTTTATAATAATCATC-------CCCTTTGAACA-TAAAATAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4138313 54 - 5137665 GGTTCTGCCAAGAACAAAATTTTATAATAATCATC-------CCCTTTGAACA-TAAAATAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43911 54 - 60632 GGTTCTGCCAAAAACAAAATTTTATAATAATCATC-------CTCTTTTAACA-TAAAATAT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1953544 54 + 2427316 GGTTCTGCTAAGAACAAAATTTTATAATAATCATC-------CCCTTTGAACA-TAAAATAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240411 54 + 1448899 GGTTCTGCCAAAAACAAAATTTTATAATAATCATC-------CCCTTTTAACA-TAAAATAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979195 52 - 190850796 GGTTCTACCAAAAAGAAAATTTTATAACAATTATC-------CC--TTTAACA-TAAAATAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141225 54 - 15139346 GGTTCTACCAAAAAGAAAATTTTATAATAATTATC-------CCCTTTTAACA-TAAAATAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930321 55 - 7304997 AATTCTACCAAAAAGAAAATTTTATAAAAATTATC-------CCCTTTTAACATTAAAATAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341703 54 - 11631747 GGTTCTACCAAAAAGAAAATTTTATAATAATTATC-------CCCTTTTAACA-CAAAATAT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1832493 54 + 4188776 GGTCCTGCCAAAAAGAAAATTTTATAATAATTATC-------TCTCTTTCACA-TAAAATAT i proCoq1.NW_012140747v1 C 0 I 44 s mm10.chr5 76392212 52 + 151834684 AGCTCTGCCAAAAGAGAAATTTTATAATTATCATC-------TC--TTCCACA-TAAAATGT i mm10.chr5 C 0 I 1 s canFam3.chr13 47945725 50 + 63241923 GGTTTTTCCAAAAAGAAACATTTATAATAATTCTC-----------TTCCACA-AGAAACAT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053432 61 - 5279953 GATCTTGCCAAAAAGAAAAATTTTTTGTAATCATCAATTAGCTCTCTTCCACA-TAAAATAT i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1752920 301 + 3286835 I e otoGar3.GL873602 8582910 337 + 8790067 I a score=87807.000000 s hg38.chr4_KI270787v1_alt 10003 9 + 111943 CCCAG--TTTT s panTro5.chr4 119572319 9 - 194502333 CCCAG--TTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988595 9 - 195804263 CCCAG--TTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419676 9 - 17550833 CCCAG--TTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295132 9 - 118206036 CCCAG--TTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500122 9 - 190429646 CCCAG--TTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668235 9 - 189454096 CCCAG--TTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236042 9 + 26754465 CCCAG--TTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4138367 9 - 5137665 CCCAG--TTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43965 9 - 60632 CCCAG--TTTT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1953598 9 + 2427316 CCCAG--TTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240465 9 + 1448899 CCCAG--TTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979247 9 - 190850796 CCCAG--TTTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141279 9 - 15139346 CCCAG--TTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930376 11 - 7304997 CCCAGTTTTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341757 9 - 11631747 CCCAG--TTTT i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76392265 8 + 151834684 CTCAC--TTT- i mm10.chr5 I 1 I 358 s canFam3.chr13 47945775 4 + 63241923 TGCA------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053493 9 - 5279953 TCCAA--TTTT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1832547 44 + 4188776 I e micMur3.chrUn_NW_017968520v1 1752920 301 + 3286835 I e otoGar3.GL873602 8582910 337 + 8790067 I a score=168660.000000 s hg38.chr4_KI270787v1_alt 10012 23 + 111943 CTAA---TAAttttttttctgagaca s panTro5.chr4 119572328 23 - 194502333 CTAA---TAAttttttttctgagaca i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988604 23 - 195804263 CTAA---TAAttttttttctgagaca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419685 21 - 17550833 CTAA---TAAttttttt--tgagaca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295141 23 - 118206036 CTAA---TAATTGtttttttgagaca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500131 23 - 190429646 CTAA---TAAttttatttttgagaca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668244 23 - 189454096 CTAA---TAAttttatttttgagaca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236051 23 + 26754465 CTAA---TAAttttatttttgagaca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4138376 23 - 5137665 CTAA---TAAttttatttttgagaca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43974 23 - 60632 CTAA---TAAttttatttttgagaca i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1953607 23 + 2427316 CTAA---TAAttttatttttgagaca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240474 23 + 1448899 CTAA---TAAttttgtttttgagaca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979256 23 - 190850796 CTAG---TAAttttttttttaagaca i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141288 26 - 15139346 CTAGAAtttttttttttttttagaca i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930387 25 - 7304997 CTAGTA-Atttttttttttttagaca i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341766 25 - 11631747 CTAGTA-Atttttttttttttagaca i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47945779 13 + 63241923 -------------TTTTTCTGAAACA i canFam3.chr13 C 0 I 19 e proCoq1.NW_012140747v1 1832547 44 + 4188776 I e micMur3.chrUn_NW_017968520v1 1752920 301 + 3286835 I e mm10.chr5 76392273 358 + 151834684 I e dasNov3.JH568349 4053502 0 - 5279953 C e otoGar3.GL873602 8582910 337 + 8790067 I a score=986206.000000 s hg38.chr4_KI270787v1_alt 10035 107 + 111943 ggatctcactctgttg-cccaggctggattgcagtggcgtgacctcagttcactgcagcctcgacctccctggctcaagggatctccctacctcagcctccttagtag s panTro5.chr4 119572351 107 - 194502333 ggatctcactctgttg-cccaggctggattgcagtggcatgacctcagttcactgcagcctcgacctccctggctcaagggatctccctacctcagcctccctagtag i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988627 107 - 195804263 ggatctcactctgttg-cccaggctggattgcagtggcatgacctcagttcactgcagcctcgacctccctggctcaagggatctccctacctcagcctccctagtag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419706 107 - 17550833 agatctcactgtgttg-cccaggctgcattgcagtggcatgacctcagttcactgcagcctcaacctccctggctcaagggatctccctacctcagcctccctagtag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295164 107 - 118206036 ggatctcactctgtgg-cccaggctggattgcagtggtgtgatctcagctcactgcagcctcgacctccctggctcaagggatcctcctacctcagcctcccgagtag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500154 106 - 190429646 gtatcttactc--ttgccccaggctggattgcagtggtgtgacctcagctcactgcagcctcgacctccctggctcaagggatcctcctacctcagcctcccgagtag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668267 106 - 189454096 gtatcttactc--ttgccccaggctggattgcagtggtgtgacctcagctcactgcagcctcgacctccctggctcaagggatcctcctacctcagcctcccgagtag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236074 106 + 26754465 gtatcttactc--ttgccccaggctggattgcagtggtgtgacctcagctcactgcagcctcgacctccctggctcaagggatcctcctacctcagcctcccgagtag i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4138399 105 - 5137665 gtatcttactc--ttg-cccaggctggattgcagtggtgtgacctcagctcactgcagtctcgacctccctggctcaagggatcctcctacctcagcctcctgagtag i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 43997 105 - 60632 gtatcttactc--ttg-cccaggctggattgcagtggtgtgacctcagctcactgcagtctcgacctccctggctcaagggatcctcctacctcagcctcccgagtag i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1953630 105 + 2427316 gtatcttactc--ttg-cccaggctggattgcagtggtgtgacctcagctcactgcagcctcaacctccctggctcaagggatcctcctacctcagcctcccgagtag i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240497 105 + 1448899 gtatcttattc--ttg-cccaggctggattgcagtggtgtgacctcagctcactgcagcctcgacctccctggctcaagggatcctcctacctcagcctcccgagtag i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979279 107 - 190850796 ggatctcactctgctg-cccaggctggagtgtagtggcactatctcagttcactgcagccttgacccccccggctcaagagatcctcctacctcagtctcccgagtag i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141314 106 - 15139346 ggatctcactctgctg-ctcaggctggagtgtagtggcgctatctcagctcactgcagccttgg-ccccccagctcaagggatcctcctaccccagtctcccgggtag i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930412 106 - 7304997 ggatctcactccattg-cccaggctggagtgcagtggcgctatctcagctcactgcagccttga-ccccctggctcaagggatcctcctacctcagcctcccgagtag i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341791 106 - 11631747 ggatctcactctgctg-cccaggctggagtgtagtggcgctatctcagctcactgcagccttga-ctccccggctcaagggatcctcctacctcaacctcccaagtag i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1832547 44 + 4188776 I e micMur3.chrUn_NW_017968520v1 1752920 301 + 3286835 I e mm10.chr5 76392273 358 + 151834684 I e dasNov3.JH568349 4053502 0 - 5279953 C e otoGar3.GL873602 8582910 337 + 8790067 I e canFam3.chr13 47945792 19 + 63241923 I a score=132976.000000 s hg38.chr4_KI270787v1_alt 10142 11 + 111943 ctggtactaca s panTro5.chr4 119572458 11 - 194502333 ctggtactaca i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988734 11 - 195804263 ctggtactaca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419813 11 - 17550833 ctggtactaca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295271 11 - 118206036 ctggtactaca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500260 11 - 190429646 ctggtactaca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668373 11 - 189454096 ctggtactaca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236180 11 + 26754465 ctggtactaca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4138504 11 - 5137665 ctggtactaca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 44102 11 - 60632 ctggtactaca i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1953735 11 + 2427316 ctggtactaca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240602 11 + 1448899 ctggtactaca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979386 11 - 190850796 ctggtactaca i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141420 11 - 15139346 ctggtactaca i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930518 11 - 7304997 ctggtaccaca i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341897 11 - 11631747 ctgggactaca i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4053502 11 - 5279953 CTGGTGCTATA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1832547 44 + 4188776 I e micMur3.chrUn_NW_017968520v1 1752920 301 + 3286835 I e mm10.chr5 76392273 358 + 151834684 I e otoGar3.GL873602 8582910 337 + 8790067 I e canFam3.chr13 47945792 19 + 63241923 I a score=1330913.000000 s hg38.chr4_KI270787v1_alt 10153 137 + 111943 ggtgtccaccaccacatccgtttaatttttatattttttgtagagatgagttttcaccatgttgcccaggctggtctcaaactcctggcctcatg-tgatccacctgcctcagcctcccaaagtgctgggattacagg s panTro5.chr4 119572469 137 - 194502333 ggtgtccaccaccacatccgtttaatttttatattttttgtagagatgagttttcaccatgttgcccaggctggtctcaaactcctggcctcatg-tgatccacctgcctcagcctcccaaagtgctgggattacagg i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988745 137 - 195804263 ggtgtccaccaccacatccgtttaatttttatattttttgtagagatgagttttcaccatgttgcccaggctggtctcaaactcctggcctcatg-tgatccacctgcctcagcctcccaaagtgctgggattacagg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419824 136 - 17550833 ggtgtacaccaccacgtcagtttaatttttatattttttgtagaaacgag-tttcaccatgttgcccaggctggtctcaaactcctggcctcatg-tgatccacctgccttagcctcccaaagtgctgggattacagg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295282 138 - 118206036 ggtgcacaccaccacatccgtttaatttttatattttttatagagacaagttttcaccatgttgcccaggctggtctcaaactcctggcctcatgttgatccaactgccatggccccccaaagtgctgggattacagg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500271 137 - 190429646 ggtgcacaccaccacatccctctgatttttatattttttgtagagacgggttttcaccatgttgcccaggctggtctcaaactcttggcctcatg-tgatccgcctaccttggcctcccaaaatgctgggattacagt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668384 137 - 189454096 ggtgcacaccaccacatccatctgatttttatattttttgtagagacgggttttcaccatgttgcccaggctggtctcaaactcttggcctcatg-tgatccgcctaccttggcctcccaaaatgctgggattacagt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236191 137 + 26754465 ggtgcacaccaccatatccatctgatttttatattttttgtagagacgggttttcaccatgttgcccaggctggtctcaaactcttggcctcatg-tgatccgcctaccttggcctcccaaaatgctgggattacagt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4138515 137 - 5137665 ggtgcacaccaccacatccatctgatttttatattttttgtagagacgggttttcaccatgttgcccaggctggtctcaaactcttggcctcatg-tgatccacctaccttggcctcccaaaatgctgggattacagt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 44113 137 - 60632 ggtgcacaccaccacatccatctaatttttatattttttgtagagacgggttttcaccatgttgcccaggctggtctcaaactcctggcctcatg-tgatccgcctaccttggcctcccaaaatgctgggattacagt i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1953746 137 + 2427316 ggtgcacaccaccacatccatctgatttttatattttttgtagagacgggttttcaccatgttgcccaggctggtctcaaactcttggcctcatg-tgatcctcctaccttggcctcccaaaatgctgggattacagt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240613 137 + 1448899 tgtgcacaccaccacatccatctgatttttatattttttgtagagatgggttttcaccatgttgcccaggctggtctcaaactcctggcctcatg-tgatccacctaccttggcctcccaaagtgctgggattacagg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979397 137 - 190850796 ggtacacaccaccacatccatctaatttttatattttttgtagagatgggttttcaccatgttgcccaggctggtcttaaactcctggcctcatg-tattatgcctgccttggcctcccaaactgttgggattacagg i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141431 137 - 15139346 ggtgcaaaccaccacatccatctaatttttatattttttgtagagatgggttttcaccatgttgcccaggctggtcttaaactcctggcctcatg-tgttatgtctgccttggcctcccaaagtgttgggattacaca i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930529 137 - 7304997 ggtgcacatcaccacatctatctaatttttatattttttgtagagatgggttttcaccctgctgcccaggctggtcttaaactcctggcctcatg-tgttatgcctgcctttgcctcctaaagtgttgggatttcagg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9341908 137 - 11631747 catgcacaccaccacatccatctactttttatattttttgtagagatgggctttcaccatgttgcccaggctggtcttaaactccaggcctcatg-tgttatgcctgccttggcctcccaaagtgttgtgattacagg i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1832547 44 + 4188776 I e micMur3.chrUn_NW_017968520v1 1752920 301 + 3286835 I e mm10.chr5 76392273 358 + 151834684 I e dasNov3.JH568349 4053513 0 - 5279953 C e otoGar3.GL873602 8582910 337 + 8790067 I e canFam3.chr13 47945792 19 + 63241923 I a score=289947.000000 s hg38.chr4_KI270787v1_alt 10290 28 + 111943 cgtgagccactgcaaccagcTGGTAATT s panTro5.chr4 119572606 28 - 194502333 tgtgagccactgcaaccagcTGGTAATT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988882 28 - 195804263 tgtgagccactgcaaccagcTGGTAATT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419960 28 - 17550833 cgtgagccactgcaaccagcTGGTAATT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295420 28 - 118206036 tgcgagccactgcaaccagcTGGTAATT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500408 28 - 190429646 catgagccactgcaaccagcTAGAAATT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668521 28 - 189454096 catgagccactgcaaccagcTAGAAATT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236328 28 + 26754465 catgagccactgcaaccagcTAGAAATT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4138652 28 - 5137665 catgagccactgcaaccagcTAGAAATT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 44250 28 - 60632 catgagccactgcaaccagcTGGAAATT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1953883 28 + 2427316 catgagccactgcaaccagcTAGAAATT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240750 28 + 1448899 catgagccactgcaaccagcTGGAAATT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979534 28 - 190850796 catgagccactgcaaccagATGGTAATT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141568 28 - 15139346 catgagccactgcaaccagcTGGTAATT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930666 28 - 7304997 cgtgagccactgcaaccagATGGTAATT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342045 28 - 11631747 catgagccactgcaaccagcTGGTAATT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8583247 28 + 8790067 CATGAAACATTTTAAGTTTCTGGTAATG i otoGar3.GL873602 I 337 C 0 e proCoq1.NW_012140747v1 1832547 44 + 4188776 I e micMur3.chrUn_NW_017968520v1 1752920 301 + 3286835 I e mm10.chr5 76392273 358 + 151834684 I e dasNov3.JH568349 4053513 0 - 5279953 C e canFam3.chr13 47945792 19 + 63241923 I a score=238087.000000 s hg38.chr4_KI270787v1_alt 10318 20 + 111943 TATAGATATATATCTGAGTT s panTro5.chr4 119572634 20 - 194502333 TATAGATATATATCTGAGTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988910 20 - 195804263 TATAGATATATATCTGAGTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4419988 20 - 17550833 TATAGATATATATCTGAGTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295448 20 - 118206036 TATGGATATATATCTGAGTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500436 20 - 190429646 TATAGATATATATCTGAGTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668549 20 - 189454096 TATAGATATATATCTGAGTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236356 20 + 26754465 TATAGATATATATCTGAGTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4138680 20 - 5137665 TATAGATATATATCTGAGTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 44278 20 - 60632 TATAGATATATATCTGAGTT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1953911 20 + 2427316 TATAGATATATATCTGAGTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240778 20 + 1448899 TATAGATATATATCTGAGTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979562 20 - 190850796 TATAGATATATATCTGAGTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141596 20 - 15139346 TATACATATATATGTGAGTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930694 20 - 7304997 TATAGATATATATCTGAGTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342073 20 - 11631747 TATAGATATATATCTGAGTT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8583275 18 + 8790067 TAT--ACATATCTCTGAATT i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4053513 20 - 5279953 TACACACATATATATTTGTT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1832547 44 + 4188776 I e micMur3.chrUn_NW_017968520v1 1752920 301 + 3286835 I e mm10.chr5 76392273 358 + 151834684 I e canFam3.chr13 47945792 19 + 63241923 I a score=27271.000000 s hg38.chr4_KI270787v1_alt 10338 3 + 111943 TGT-- s panTro5.chr4 119572654 3 - 194502333 TGT-- i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988930 3 - 195804263 TGT-- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4420008 3 - 17550833 TGT-- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295468 3 - 118206036 TGT-- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500456 3 - 190429646 TGT-- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668569 3 - 189454096 TGT-- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236376 3 + 26754465 TGT-- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4138700 3 - 5137665 TGT-- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 44298 3 - 60632 TGT-- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1953931 3 + 2427316 TGT-- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240798 3 + 1448899 TGT-- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979582 3 - 190850796 CAT-- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141616 3 - 15139346 TGT-- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930714 3 - 7304997 TGT-- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342093 3 - 11631747 TGT-- i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8583293 3 + 8790067 TGT-- i otoGar3.GL873602 C 0 I 6 s canFam3.chr13 47945811 3 + 63241923 TGA-- i canFam3.chr13 I 19 C 0 s dasNov3.JH568349 4053533 3 - 5279953 --TAG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1832547 44 + 4188776 I e micMur3.chrUn_NW_017968520v1 1752920 301 + 3286835 I e mm10.chr5 76392273 358 + 151834684 I a score=630986.000000 s hg38.chr4_KI270787v1_alt 10341 40 + 111943 ---TGTTT--TATACTACCTGTGCCTATGATGGACCTTGTTCTTA s panTro5.chr4 119572657 40 - 194502333 ---TGTTT--TATACTACCTGTGCCTATGATGGACCTTGTTCTTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988933 40 - 195804263 ---TGTTT--TATACTACCTGTGCCTATGATGGACCTTGTTCTTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4420011 40 - 17550833 ---TGTTT--TATACTAGCTGTGCCTATGGTGGACCTTGTTCTTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295471 40 - 118206036 ---TGTTT--TATACTACCTGTGCCTATGATGGACCTTGTTCTTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500459 40 - 190429646 ---TGTTT--TATACTACCTGTGCCTATGTTGGACCTTGTTCTTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668572 40 - 189454096 ---TGTTT--TATACTACCTGTGCCTATGTTGTACCTTGTTCTTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236379 40 + 26754465 ---TGTTT--TATACTACCTGTGCCTATGTTGGACCTTGTTCTTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4138703 40 - 5137665 ---TGTTT--TATACTACCTGTGCCTATGTTGGACCTTGTTCTTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 44301 40 - 60632 ---TGTTT--TATACTACCTGTGCCTATGTTGGACCTTGTTCTTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1953934 40 + 2427316 ---TGTTT--TATACTACCTGTGCCTATGTTGGACCTTGTTCTTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240801 40 + 1448899 ---TGTTT--TATACTACCTGTGCCTATGTTGGACCTTGTTCTTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979585 42 - 190850796 ---TGTTGTATATACTACCTGTGCCTATGATGGCCCTTGTTCTTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141619 40 - 15139346 ---TGTTG--TATACTACCTGTGCCTATGATGGCCCTTGTTCTTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930717 40 - 7304997 ---TGTTG--TATACTACCCGAGCCTATGATGGCCCTTGTTCTTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342096 42 - 11631747 ---TGTTGTATATACTACCTGTGCCTGTGATGGCCCTTGTTCTTA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1753221 39 + 3286835 ---TGTTT--TATACTACCTGTGCCTGTGGTGGGC-CTGTTCTTA i micMur3.chrUn_NW_017968520v1 I 301 C 0 s proCoq1.NW_012140747v1 1832591 40 + 4188776 ---TGTTT--TATACTACCTGTGCCTGTGGTGGGCTTTGTTCTTA i proCoq1.NW_012140747v1 I 44 I 309 s otoGar3.GL873602 8583302 40 + 8790067 ---CATTT--TATGCTACCTGTGCGTGTGGTGGGCCCTGTTCTCT i otoGar3.GL873602 I 6 C 0 s canFam3.chr13 47945814 40 + 63241923 ---TGTTT--TACACTACCTGTGTCTATGATAGACCTTGTCCTTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053536 43 - 5279953 TGATATTT--TATACTACCTGTGTCGATGATAGACCTTATTCTTA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76392273 358 + 151834684 I a score=42585.000000 s hg38.chr4_KI270787v1_alt 10381 5 + 111943 CTTAA- s panTro5.chr4 119572697 5 - 194502333 CTTAA- i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988973 5 - 195804263 CTTAA- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4420051 5 - 17550833 CTTAA- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295511 5 - 118206036 CTTAA- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500499 5 - 190429646 CTTAA- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668612 5 - 189454096 CTTGA- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236419 5 + 26754465 CTTAA- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4138743 5 - 5137665 CTTAA- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 44341 5 - 60632 CTTAA- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1953974 5 + 2427316 CTTAA- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240841 5 + 1448899 CTTAA- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979627 5 - 190850796 CTTAA- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141659 5 - 15139346 CTTAA- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930757 5 - 7304997 CTTAA- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342138 5 - 11631747 CTTAA- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1753260 4 + 3286835 TTTA-- i micMur3.chrUn_NW_017968520v1 C 0 I 306 s otoGar3.GL873602 8583342 4 + 8790067 TTCA-- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47945854 5 + 63241923 TTTAT- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053579 4 - 5279953 --TAAA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1832631 309 + 4188776 I e mm10.chr5 76392273 358 + 151834684 I a score=796966.000000 s hg38.chr4_KI270787v1_alt 10386 73 + 111943 GTTTTTGCATA-T-AGTCCAG----CTT----TTTTCCATTTTCTTGCCTTTTGTCTC--TATGAGAAAATGCTGATATT-------------ATTAT s panTro5.chr4 119572702 73 - 194502333 GTTTTTGCATA-T-AGTCCAG----CTT----TTTTCCATTTTCTTGCCTTTTGTCTC--TATGAGAAAATGCTGACATT-------------ATTAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120988978 73 - 195804263 GTTTTTGCATA-T-AGTCCAG----CTT----TTTTCCATTTTCTTGCCTTTTGTCTC--TATGAGAAAATGCTGACATT-------------ATTAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4420056 73 - 17550833 GTTTTTGCATA-T-AGTCCAG----CTT----GTTTCCATTTTCGTGCCTTTTGTCTC--TATGAGAAAATGCTGATATT-------------ATTAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295516 73 - 118206036 GTTTTTGCATA-T-ATTCCAG----CTT----GTTTCCATTTTCTTACCTTTTGTCTC--TATGAGAAAATGCTGATATT-------------ATTAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500504 73 - 190429646 GTTTTTGCATA-T-ATTCCAG----CTT----GTTTTCATTTTCATACCTTTTGTCTC--TATGAGAAAATGCTGATATT-------------ATTAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668617 73 - 189454096 GTTTTTGCATA-T-ATTCCAG----CTT----GTTTTCATTTTCATACCTTTTGTCTC--TATGAGAAAATGCTGATATT-------------ATTAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236424 73 + 26754465 GTTTTTGCATA-T-ATTCCAG----CTT----GTTTTCATTTTCATACCTTTTGTCTC--TATGAGAAAATGCTGATATT-------------ATTAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4138748 73 - 5137665 GTTTTTGCATA-T-ATTCCAG----CTT----GTTTTCATTTTCATACCTTTTGTCTC--TATGAGAAAATGCTGATATT-------------ATTAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 44346 73 - 60632 GTTTTTGCATA-T-ATTCCAG----CTC----GTTTTCATTTTCATACCTTTTGTCTC--TATGAGAAAATGCTGATATT-------------ATTAT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1953979 86 + 2427316 GTTTTTGCATA-T-ATTCCAG----CTT----GTTTTCATTTTCATACCTTTTGTTTC--TATGAGAAAATGCTGATACTATAAGAGTAGAAAATTAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240846 72 + 1448899 GTTTTTGCATA-T-A-TCCAG----CTT----GTTTCCATTTTCATACCTTTTGTCTC--TATGAGAAAATGCTGATATT-------------ATTAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979632 75 - 190850796 GTTTTTGCACA-T-ATTCCTG----CAT----GTTTCCGTTTTCTTACCTTTTGTCTCTTTATGAGAAAATACTGATATT-------------ATTAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141664 75 - 15139346 GTTTTTGCACA-T-ATTCCAG----CAT----GTTTCCGTTTTCTTACCTTCTGTGTCTTTATGAGAAAATACTGATATT-------------ATTAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930762 75 - 7304997 GTTTTTGCACA-T-ATTCCAG----CAT----GTTTCCGTTTTCTTACCTTTTGTCTCTTTATGAGAAAATACTGATATT-------------ATTAt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342143 75 - 11631747 GTTTTTGCACA-T-ATTCCAG----CAT----GTTTCCATTTCCTTACCTTTTGTCTCTTTATGAGAAAATACTGATATT-------------ATTAT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8583346 73 + 8790067 -----TGCACATT-ATTCTAG----CTTATTCATTTCTATAGTCTCATCTTTTTTCTT--TATTGGAAAATACTGATATT-------------GTTAT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47945859 80 + 63241923 GTTTAGGCACA-TCATCCCAGATTATTT----GTTTCTGTATTCTTATTTTTTGTCTCTTCATTGGAAAATATTGGTATC-------------ATTAC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053583 66 - 5279953 GTTTATGCACA-TGATTCCAG----CTTGTTTGTTTCCATATTCTTATCCTTTGTCTCTTTATTGGAAAAC--------------------------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1832631 309 + 4188776 I e micMur3.chrUn_NW_017968520v1 1753264 306 + 3286835 I e mm10.chr5 76392273 358 + 151834684 I a score=2655027.000000 s hg38.chr4_KI270787v1_alt 10459 233 + 111943 AAGAGTAGAAATTTTGGAATCAGA--------------G----------------CCTA------------GTACTGAAACTTGCTATGTAAGGGACATTAGACCCAATCCTTTATTTTAGGAAGCCCAGTTGGTTTTTTATTTTTT--ATTTTAatttgtaaagtgaggata--aaataactta--------------taggttcattgt-aggatcaaatgagtgaacat-a-----tataaaactcgtagcgtagtt-------tccccatattagctactcaataagtgAGAGGCT-CTCCTTT s panTro5.chr4 119572775 233 - 194502333 AAGAGTAGAAATTTTGGAATCAGA--------------G----------------CCTA------------GTACTGAAACTTGCTATGTAAGGGACATTAGACCCAATCCTTTATTTTAGGAAGCCCAGTTGGTTTTTTATTTTTT--ATTTTAatttgtaaagtgaggata--aaataactta--------------taggttcattgt-aggatcaaatgagtgaacat-a-----tataaaactcgtagcgtagtt-------tccccatattagctactcaataagtgAGAGGCT-CTCCTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120989051 232 - 195804263 AAGAGTAGAAATTTTGGAATCAGA--------------G----------------CCTA------------GTACTGAAACTTGCTATGTAAGGGACATTAGACCCAATCCTTTATTTTAGGAAGCCCAGTTGGTTTTTTA-TTTTT--ATTTTAatttgtaaagtgaggata--aaataactta--------------taggttcattgt-aggatcaaatgagtgaacat-a-----tataaaactcgtagcgtagtt-------tccccatattagctactcaataagtgAGAGGCT-CTCCTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4420129 233 - 17550833 AAgagtagaaattttggaatcaga--------------t----------------ccta------------gtactgaaacttgctatgtaagggacattagacccaatcctttattttaggaagcccagttggttttttatttttt--attttaatttgtaaagtgaggata--aaataacgta--------------taggttcattgt-aggatcaaatgagtgaacat-a-----tataaaactcatagcgtagtt-------tccccatattagctactcaataagtgAGAGGCT-CTCCTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295589 233 - 118206036 AAGAGTAGAAATTTTGGAATCAGA--------------T----------------CCTA------------GTATTGAAACTTGCTATGTAAGGGACATTAGACCCAATCCTTTATTTTAGGAAGCCCAGTTGGTTTTTTATTTTTT--ATTTTAatttgtaaagtgaggata--aaataactta--------------ggggttaattat-aggatcaaatgagtgaacat-a-----tataaaactcgtagcatagtt-------tccccatattagctactcgataagtgAGAGGCT-CTCCTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500577 235 - 190429646 AAGGGTAGAAATTTtggaatcaga--------------t----------------cctg------------gtactgaaacttactatgtaagggacactagactcaatcctttatttgagggtgcccagttggttttttatttttt--attttaatttgtaaaatgaggatt--aaatcactta--------------caggttcattgtaaggatcaaatgagtgaacat-a-----cataaaatccgtagtgtagtt-------tccccatattaactactcgataaatgAGAGGCTCCTCCTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668690 235 - 189454096 AAGggtagaaattttggaatcaga--------------t----------------cctg------------gtactgaaacttactatgtaagggacactagactcaatcctttatttgagggtgcccagttggttttttatttttt--attttaatttgtaaaatgaggatt--aaatcactta--------------caggttcattgtaaggatcaaatgagtgaacat-a-----cataaaatccgtagtgtagtt-------tccccatattaactactcgataaatgagaggctcCTCCTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236497 235 + 26754465 AAGGGTAGAAATTTtggaatcaga--------------t----------------cctg------------gtactgaaacttactatgtaagggacactagactcaatcctttattttagggtgcccagttggttttttatttttt--attttaatttgtaaaatgaggatt--aaatcactta--------------caggttcattgtaaggatcaaatgagtgaacat-a-----cataaaatccgtagtgtagtt-------tccccatattaactactcgataaatgAGAGGCTCCTCCTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4138821 235 - 5137665 AAGAGTAGAAATTTTGGAATCAGA--------------T----------------CTTG------------GTACTGAAACTTACTATGTAAGGGACACTAGACTCAATCCTTTATTTTAGGGTGCCCAGTTGGTTTTTTATTTTTT--ATTTTAatttgtaaaatgaggatt--aaatcactaa--------------taggttcatcgtaaggatcaaatgagtgaacat-a-----cataaaatccgtagtgtagtt-------tccccatattaactactcgataaatgAGAGGCTCCTCCTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 44419 235 - 60632 AAGAGTAGAAATTTtggaatcaga--------------t----------------cctg------------gtactgaaacttactatgtaagggacactagactcaatcctttattttagggtgcccagttggttttttatttttt--attttaatttgtaaaatgaggata--aaatcactta--------------taggttcattgtaaggatcaaatgagtgaacat-a-----cataaaatccgtagtgtagtt-------tccccatattagctactcaataaatgAGAGACTCCTCCTTT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1954065 235 + 2427316 AAGAGTAGAAATTTTGGAATCAGA--------------T----------------CTTG------------GTACTGAAACTTACTATGTAAGGGACACTAGACTCAATCCTTTATTTTAGGGTGCCCAGTTGGTTTTTTATTTTTT--ATTTTAatttgtaaaatgaggatt--aaatcactta--------------taggttcattgtaaggatcaaatgagtgaacat-a-----cataaaatccgtagtgtagtt-------tccccatattaactactcgataaatgAGAGGCTCCTCCTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1240918 234 + 1448899 AAGAGTAGAAATTTtggaatcaga--------------t----------------cctg------------gtactgaaacttactatgtaagggacactagactcagtcctttattttagggtgcccagttgg-tttttaattttt--attttaatttgtaaaatgaggata--aaatcactta--------------taggttccttgtcaggatcaaatgagtgaacat-a-----cataaaatctgtagtgtagtt-------tccctatattagctactcgataaatgAGAGGCTCCTCCTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979707 244 - 190850796 AAGAGTAGGAATTTTGGAATCAGA--------------T----------------CCTGCTTGCTATGTAAGGGACGAAACTTGCTATGTAAGGGACGCTAGACCCAATCCTTTATTTTAAGGATCCCAGTTGG---CTTATTTTTT--ATTTTAatttgcaaaatgaggata--aaataactta--------------caggttcattgtaaggatcaaatgagtgaacat-a-----cataaaacccctagtgtagtt-------tccccatattagctactcaataaatgAGAGGCTCCTCCTTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141739 232 - 15139346 aagagtaggaattttggaatcaga--------------t----------------cctg------------gtactgaaacttgctatgtaaggtacgccagacccaatcctttatttcagggatcccagtttg---cttatttttt--attttaatttgcaaaatgaggata--aaataactta--------------cagcttcattgtaaggatcaaatgagtgaacat-a-----cataaaacccctagtgtagtt-------tccccatattagctactcaataaatgagaggctcCTCCTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6930837 229 - 7304997 aagagtaggaattttggaatcaga--------------t----------------cctg------------gtaccaaaacttgctatgtaagggacgctagacccaaccctttattttagggatcccagttgg---ctta---ctt--attttaatttgcaaaatgaggata--aaataactta--------------cagcttcattgtaaggatcaaatgagtgaacat-a-----cataaaactcctagtgtagtt-------gccccatattagctactcaataaatgAGAGGCTCCTCCTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342218 232 - 11631747 aagagtaggaattttggaatcaga--------------t----------------cctg------------gtaccaaaacttgctatgtaagagacgctagacccaatcctttattttagggatcccagttgg---cttatttttt--attttaatttgcaaaatgaggata--aaataactta--------------caggttcattgtaaggatcaaatgagtgaacat-a-----cataaaccccctagtgtagtt-------tcctcatattagctaatcaataaatgagaggctcCTCCTTT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8583419 218 + 8790067 --GATTATGAATTTTATAAtcaga--------------t----------------cctg------------gttctgcaacttactacgtaagggacattaggccaaatttttaattttatgaaacctgatt----------ttttt--tttttaatttgtaaaacaagg-----aaataactt---------------cagggttgttgtaacaagccagtgagggaagataa-----catgaaacccctaatgtagtT-------TCCCTGTATTAGCTATGCAATAAAGAAGA--CTGTTCCTTA i otoGar3.GL873602 C 0 I 2 s mm10.chr5 76392631 242 + 151834684 AAAAGTAAAG---TTGGAACTGGA--------------T----------------CCTT------------GTTTTGCCGTTTAGAGTGTAAGAGCGTTCTGGCCAAACACTAACTTTTGTGGAGCCCAGTTGTCTTGTTGTCTCT----GTCAAACTTGTAAAATGAGTTTT--GCAATGCTTGACTCAGGGGGTCACCAGGGCCACTGTGAGGATCGAAT-AGGGAGCAC-AATGCTTCCCAGACCTCTGGTATGGGT-------TCCCTTTGTT-GCTGCACT-----TATGAGACTCCCTCTTC i mm10.chr5 I 358 C 0 s canFam3.chr13 47945939 254 + 63241923 aagagtagcagttttataaccagatatatggatctcatt----------------ttca------------gtcctacaacttactatctaagggaccctgagacaaatccttaacttcatggaacccagttgt---tgttgttgtt--gttttaatttgtaaaatggggataataattaattta--------------cagggtcattgtaaggatcaaatgataaaacat-a-----tataaaacCTCTCTAATGGTTTCAAATGTCCTGGTCTTAGCTACTCAATGAATGGGAGATT-TTCTGTT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053649 234 - 5279953 aagggtaggagttttggaatcaga--------------tagacatcatttcagtcctgg------------gttctgtaacttactacattaagga------accaaattcttaacttcatggagcccag----------attttttaaaatttaatttataaaatggggaaaataattaactta--------------ctg-ctcattgtaagaatcaaatgagaaaac---a-----cttaaagccctcagtgcagta-------tcc-tatgttagacactcaataaatgggagactcCTCTTT- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1832631 309 + 4188776 I e micMur3.chrUn_NW_017968520v1 1753264 306 + 3286835 I a score=27999.000000 s hg38.chr4_KI270787v1_alt 10692 3 + 111943 TGT s panTro5.chr4 119573008 3 - 194502333 TGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120989283 3 - 195804263 TGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4420362 3 - 17550833 TGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295822 3 - 118206036 TGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500812 3 - 190429646 TGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668925 3 - 189454096 TGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236732 3 + 26754465 TGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4139056 3 - 5137665 TGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 44654 3 - 60632 TGT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1954300 3 + 2427316 TGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1241152 3 + 1448899 TGT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979951 3 - 190850796 TGT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141971 3 - 15139346 TGT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6931066 3 - 7304997 TGT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342450 3 - 11631747 TGT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1753570 1 + 3286835 T-- i micMur3.chrUn_NW_017968520v1 I 306 I 2 s otoGar3.GL873602 8583639 1 + 8790067 T-- i otoGar3.GL873602 I 2 C 0 s mm10.chr5 76392873 3 + 151834684 TGT i mm10.chr5 C 0 C 0 s canFam3.chr13 47946193 3 + 63241923 CGT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053883 3 - 5279953 TGA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1832631 309 + 4188776 I a score=807954.000000 s hg38.chr4_KI270787v1_alt 10695 56 + 111943 ATGAGGTAGC---CTAGACATCCTCGATCTAAAAA---TTAATAGTTGTCTAGGCTGTGAGA s panTro5.chr4 119573011 56 - 194502333 ATGAGGTAGC---CTAGACATCCTCGATCTAAAAA---TTAATAGTTGTCTAGGCTGTGAGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120989286 56 - 195804263 ATGAGGTAGC---CTAGACATCCTTGATCTAAAAA---TTAATAGTTGTCTAGGCTGTGAGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4420365 56 - 17550833 ATGAGGTAGC---CTAGACATCCTCGATCTAAAAA---TTAATAGTTGTCTAGGCTGTGAGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295825 56 - 118206036 ATGAGGTAGC---CTAGACATCCTCAATCTAAAAA---TTAATAGTTGTCTAGACTGTGAGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500815 59 - 190429646 ATGAGGTAGCTTCTTAGACACCCTCAGTCTAAAAA---TTAATAGTTGTCTAGGCTGTGAGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668928 59 - 189454096 ATGAGGTAGCTTCTTAGACACCCTCAGTCTAAAAA---TTAATAGTTGTCTAGGCTGTGAGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236735 59 + 26754465 ATGAGGTAGCTTCTTAGACACCCTCAGTCTAAAAA---TTAATAGTTGTCTAGGCTGTGAGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4139059 59 - 5137665 ATGAGGTAGCTTCTTAGACATCCTCAGTCTAAAAA---TTAATAGTTGTCTAGGCTGTGAGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 44657 59 - 60632 ATGAGGTAGCTTTTTAGACATTCTCAGTCTAAAAA---TTAATAGTTGTCTAGGCTGTGAGA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1954303 59 + 2427316 ATGAGGTAGCTTCTTAGACATCCTCAGTCTAAAAA---TTAATAGTTGTCTAGGCTGTGAGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1241155 55 + 1448899 ATGAGGTAGCTTCTTAGACATCGTCAGTCTAAA-------AATAGTTGTCTAGGCTGTGAGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52979954 55 - 190850796 ATGAGGTAGC---ACAGACATCTT-GATCTAAAAA---TTAATTGTTATCTAGGCTGTGAGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8141974 55 - 15139346 ATGAGGTAGC---ACAGACATTTT-GATCTAAAAA---TCAATTGTTATCTAGGCTGTGAGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6931069 55 - 7304997 ATGAGGTAGC---ACAGACATCTT-GATCTAAAAC---TTAATTGTTATCTAGGCTGTGAGC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342453 53 - 11631747 ATGAGGTAGC---ACAGACATCTT---TCTAAAAA---TTAATTGTTATCTAGGCTGTGAGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1753573 56 + 3286835 ATGAGGTAGC---ACAGACATCCTTGATCTAAAAT---GTAATAGTTGTCTGGGCTATGAGA i micMur3.chrUn_NW_017968520v1 I 2 I 77 s proCoq1.NW_012140747v1 1832940 56 + 4188776 ATGAGGTAGC---ACAGACATCCTTGATCTAAAAT---TTAATAATTGTCTAGGCTATGAGA i proCoq1.NW_012140747v1 I 309 I 39 s otoGar3.GL873602 8583640 56 + 8790067 ATGCGGTGGC---ACAGACATCCTTAATCTAAAAT---TTAAGCATTGTCTAGGCCATGAGA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76392876 56 + 151834684 ATAAAATAGC---ACAGACGCCCTTGACTTCAAAA---TTGATAGTTGTCTAGTCTCTAGAA i mm10.chr5 C 0 C 0 s canFam3.chr13 47946196 56 + 63241923 ATGAGGTAGC---ACAGATATGCTCAATCTAAAAA---TTAACAGTTGTCTAGACTATGCGG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053886 59 - 5279953 ATGAGGTACC---AGAGATATCCTCAATCTCAGAAACTTCAACAGTTGTCTAGGTTACAAGG i dasNov3.JH568349 C 0 C 0 a score=277040.000000 s hg38.chr4_KI270787v1_alt 10751 22 + 111943 GCATACGCAA--------ATATCTGTTTTA s panTro5.chr4 119573067 22 - 194502333 GCATACGCAA--------ATATCTGTTTTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120989342 22 - 195804263 GCATACGCAA--------ATATCTGTTTTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4420421 22 - 17550833 GCATACGCAA--------ATATCTGTTTTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295881 22 - 118206036 GCATACGCAA--------ATATCTGTTTTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500874 22 - 190429646 GCACATGCAA--------ATATCCATTTTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110668987 22 - 189454096 GCACATGCAA--------ATATCCATTTTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236794 22 + 26754465 GCACATGCAA--------ATATCCATTTTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4139118 22 - 5137665 GCACACGCAA--------ATATCCATTTTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 44716 22 - 60632 GCACATGCAA--------ATATCCATTTTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1954362 22 + 2427316 GCACATGCAA--------ATATCCATTTTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1241210 22 + 1448899 GCACATGCAA--------ATATCCATTTTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52980009 22 - 190850796 GCACATGCAA--------ATATCCattttt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8142029 21 - 15139346 GCACATGC-A--------ATATCCatttaa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6931124 22 - 7304997 GCACATGCAA--------ATATCCATTTTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342506 22 - 11631747 GCACATGCAA--------ATATCCATTTTA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8583696 22 + 8790067 ACACATGTAA--------ATATCTATTTTA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76392932 30 + 151834684 GCACACGCAAAAATGTAGATGTCTTTTTTA i mm10.chr5 C 0 C 0 s canFam3.chr13 47946252 22 + 63241923 GAACATGTAA--------ATATTCATTTGA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053945 22 - 5279953 ATGCATGTAA--------ATATTTGTTAGA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1832996 39 + 4188776 I e micMur3.chrUn_NW_017968520v1 1753629 77 + 3286835 I a score=103118.000000 s hg38.chr4_KI270787v1_alt 10773 9 + 111943 AAATAATTA s panTro5.chr4 119573089 9 - 194502333 AAATAATTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120989364 9 - 195804263 AAATAATTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4420443 9 - 17550833 AAATAATTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295903 9 - 118206036 AAATAATTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500896 9 - 190429646 AAATAATTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110669009 9 - 189454096 AAATAATTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236816 9 + 26754465 AAATAATTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4139140 9 - 5137665 AAATAATTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 44738 9 - 60632 AAATAATTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1954384 9 + 2427316 AAATACTTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1241232 9 + 1448899 AAATAATTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52980031 9 - 190850796 aaatactta i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8142050 9 - 15139346 aaatactta i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6931146 9 - 7304997 AAATATTTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342528 9 - 11631747 AAATACTTA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8583718 9 + 8790067 ATGTAATTG i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47946274 9 + 63241923 AAATGACTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053967 9 - 5279953 AAATTAATG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1832996 39 + 4188776 I e micMur3.chrUn_NW_017968520v1 1753629 77 + 3286835 I e mm10.chr5 76392962 0 + 151834684 C a score=2860278.000000 s hg38.chr4_KI270787v1_alt 10782 344 + 111943 TTTTTAAggctgggcatggtgtttcacacctgtaatcccagcactttgggaggctgaggcaggtgaatcacttgaggtaaggagtttgagaccagcctggccaacatggcaaacc-ctgtctctactaaaaatacaaaaattagccaggcgtggtggcaggtgcctgtagtgttcagc-ctgtagaggctgaggcaggagaactgcatgagtgcttgagtctgggaagcagaggttgcagtgagccgagatcacgccactgcactccagcctgggtgacagagcaagactccctctc--------------------aaaaacaaacaaacaaacaaacaaat-aaaTAAATAAATAAAATAATTTT s panTro5.chr4 119573098 330 - 194502333 TTTTTAAggctgggcatggtggttcacacctgtaatcccagcactttgggaggctgaggcaggtgaatcacttgaggtaaggagtttgagaccagcctggccaacatggcaaacc-ctgtctctactaaaaatacaaaaattagccaggcgtggtggcaggtgcctgtagtgttcagc-ctgtagaggctgaggcaggagaactgcatgagtgcttgagtctgggaagcagaggttgcagtgagccgagatcacgccactgcactccagcctgggtgacagagcaagactccctctc--------------------aa------------aaacaaacaaat-aaataaataaataaaaTAA--TT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120989373 334 - 195804263 TTTTTAAggctgggcatggtggttcacacctgtaatcccagcactttgggaggctgaggcaggtgaatcacttgaggtaaggagtttgagaccagcctggccaacatggcaaacc-ctgtctctactaaaaatacaaaaattagccaggcgtggtggcaggtgcctgtagtgttcagc-ctgtagaggctgaggcaggagaactgcatgagtgcttgagtctgggaagcagaggttgcagtgagccgagatcacgccactgcactccagcctgggtgacagagcaagactccctctc--------------------aa--------aaacaaataaataaat-aaataaataaataaaATAA--TT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4420452 323 - 17550833 TTTTTAAggctgggcatggtggttcacacctgtaatcccagcactttgggaggctgaggcaggtgaatcacttgaggtaaggagtttgagaccagcctggccaacatggcaaacc-ctgtctctactaaaaatacaaaaattagccaggcgtggtggca-gtgcctgtagtcttcagc-ctgtagaggctgaggcaggagaattgcatgagtgcttgagtccgggaagcagaggttgcagtgagccaagatcacgccactgcactccagcctgggtgacagagcaagactccctctc--------------------aa--------------aaaaataaat-aaataaaTACATAAT------TT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69295912 329 - 118206036 TTTTTAAggctgggcatggtggttcacaactgtaatcccagcattttgggaggctgaggcaggtgaatcacttgaggtaaggagtttgagaccagcctggccaacatggcaaacc----------ctaaaaatacaaacattagccaggcgtggtggcaggtgcctgtggtcttcagc-ttgtagaggctgaggcaggagaattgcttcagtgcttgagtctgggaaacagaggttgcagtgagccgagatcacgccactgcactccagcctgggtgacagagcaagagtccctctc--------------------aa------aaaaaaaaataaataaataaaataaaTAAATAAAATAAT-TA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111500905 317 - 190429646 TTTTTAAggcagggcatggtgtttcacacctgtaatcccaggactttgggaggctgaggcaggtgaatcacttgaggtcaggagttcgaaatcagcctggccaacatggcaaaacgctgtctctactaaaaatacaaaaattagccaggcatggtggcaggtgcctgtggtcttcagt-ctgtagaggctgaggcaggagaat--------tgcttgagtctgggaagcagaggtttcagtgagccaagatcacgccactgcactccagcctgggtgacagggcaagactccctgtc--------------------------------------aaataaat-aaataaata-ataaaaTAAT-TA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110669018 313 - 189454096 TTTTTAAggcagggcatggtgtttcacacctgtaatcccaggactttgggaggctgaggcaggtgaatcacttgaggtcaggagttcgaaatcagcctggccaacatggcaaaacgctgtctctactaaaaatacaaaaattagccaggcatggtggcaggtgcctgtggtcttcagt-ctgtagaggctgaggcaggagaat--------tgcttgagtctgggaagcagaggtttcagtgagccaagatcacgccactgcactccagcctgggtgacagggcaagactccctgtc------------------------------------------aaat-aaataaata-ataaaaTAAT-TA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13236825 325 + 26754465 TTTTTAAggcagggcatggtgtttcacacctgtaatcccaggactttgggaggctgaggcaggtgaatcacttgaggtcaggagttcgaaatcagcctggccaacatggcaaaatgctgtctctactaaaaatacaaaaattagccaggcatggtggcaggtgcctgtggtcttcagt-ctgtagaggctgaggcaggagaat--------tgcttgagtctgggaagcagaggtttcagtgagccaagatcacgccactgcactccagcctgggtgacagggcaagactccCTGTC----------------aaataa--------------ataaataaat-aaataaata-ataaaATAAT-TA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4139149 321 - 5137665 TTTTTAAggcagggcatggtgtttcacacctgtaatcccaggactttgggaggctgaggcaggtgaatcacttgaggtcaggagttcgaaatcagcctggccaacatggcaaaacgctgtctctactaaaaatacaaaaattagccaggcatggtggcaggtgcctgtggtcttcagt-ctgtagaggctgaggcaggagaat--------tgcttgagtctgggaagcagaggtttcagtgagccaagatcacgccactgcactccagcctgggtgacagggcaagactccctgtc--------------------aa--------------ataaataaat-aaataaata-ataaaaTAAT-TA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 44747 341 - 60632 TTTTTAAggcagggcatggtgtttcacacctgtaatcccaggactttgggagactgaggcaggtgaatcacttgaggtcaggagttcgaaatcagcctggccaacaaggcaaaacgctgtctctactaaaagtacaaaaattagccaggcatggtggcaggtgcctgtagtcttcagt-ctgtagaggctgaggcaggagaat--------tgcttgagtctgggaagcagaggtttcagtgagccaagatcacgccactgcactccagactgggtgacagggcaagactccctgtcaaGtaaataaataaataaataa--------------ataaataaat-aaataaata-GTAAAATAAT-TA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1954393 321 + 2427316 TTTTTAAggcagggcatggtgtttcacacctgtaatcccaggactttgggaggctgaggcaggtgaatcacttgaggtcaggagttcgaaatcagcctggccaacatggcaaaatgctgtctctactaaaaatacaaaaattagccaggcatggtggcaggtgcctgtggtcttcaat-ctgtagaggctgaggcaggagaat--------tgcttgagtctgggaagcagaggtttcagtgagccaagatcacgccactgcactccagcctgggtgacagggcaagactccccgtc--------------------aa--------------ataaataaat-aaataaata-ataaaaTAAT-TA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1241241 320 + 1448899 TTTTTAA-ACAgggcatggtgtttcacacctgtaatcccaggactttgggaggttgaggcaggtgaatcacttgaggtcaggagttcgaaatcagcctggccaacatggcaaaacgctgtctctactaaaaatacaaaaattagccaggcatggtggcaggtgcctgtggtcttcagt-ctgtagaggctgaggcaggagaat--------tgcttgagtctgggaagcagaggtttcagtgagccgagatcacgccactgcactccagcctgggtgacagggcaagactccctgtc--------------------aa--------------ataaataaat-aaataaata-ataaaaTAAT-TA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52980040 316 - 190850796 tttttaaggccgggcatggtggttcccacctgtaatcccagcactttgggaggctaaggcgggtgaatcacttaagatcaggagttcgagaccagccgggccaacacggcgaaaccctatctctactaaaaacacaaaaattagcctggtatggtggcatgtgcctgtgatccccattactcaggaggctgaagcagaagaat--------tgcttgag-ctgagaagcagaggttgcagtgaactgagatcgtgccactgcactccaggctgggcaacagagcaagactccatctc--------------------aa----------------aaat-----aaataaataaataaaataat-ta i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8142059 320 - 15139346 tttttaaggccaggcatggtggttcacacctgtaatcccagcactttgggaggctaaggcgggtaaatcacttgagatcaggagttcgagaccagccgggccagcatgtctaaaccctgtctctactaaaaatacaaaaattagccaggtatggtggcatgtgcctgtgatccctgttactcaggaagctgaagcagaagaat--------tgcttgag-ccaggaagcagaggttgcagtgaactgagattgtgccactgcactccaggctgggcaacagagcaagactccatctc--------------------aa----------------aaataaaa-aaataaataaataaaataat-ta i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6931155 334 - 7304997 TTTTTAAggccgggcatggtggttcacacctgtaatcccagccctttgggaggctaaggcgggtgaatcacttgagatcaggagttcgagaccagcagggccaacatggaaaaaccctgtctctactaaaaatacaaaaattagccaggtatggtggcatgtgcctgtgatccccgttactcaggaggctgaagcagaagaat--------tgcttgag-ccgggaagcagaggttacagtgaactgagatcgtgccactgcactccagactgggcaacagaggaagactccatctc--------------------aa--ataaataaataaataaataaat-aaataaataaataaaATAAT-TA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342537 328 - 11631747 TTTTTAAggccgggcatggtggttcacacctgtaatcccagcactttgggaggctaaggcgggtgaatcgcttgagatcaggagttcgagaccagcagggccaacagggtgaaacactgtctctactaaaaatacaaaaattagccgggtatggtggcatgtgcctgtgatccccgttactcaggaggctgaagcagaagaat--------ttcttgag-ctgggaagcagaggttacagtgaactgagatcgtgccactgcactccaggctgggcaacagagcaagactccatctc--------------------aa--------aaataaataaataaat-aaataaataaataaaATAAT-TA i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1832996 39 + 4188776 I e micMur3.chrUn_NW_017968520v1 1753629 77 + 3286835 I e mm10.chr5 76392962 0 + 151834684 C e dasNov3.JH568349 4053976 0 - 5279953 C e otoGar3.GL873602 8583727 0 + 8790067 C e canFam3.chr13 47946283 0 + 63241923 C a score=63568.000000 s hg38.chr4_KI270787v1_alt 11126 5 + 111943 TTTTA s panTro5.chr4 119573428 5 - 194502333 TTTTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120989707 5 - 195804263 TTTTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4420775 5 - 17550833 TTTAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69296241 5 - 118206036 TTGTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111501222 5 - 190429646 TTTTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110669331 5 - 189454096 TTTTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13237150 5 + 26754465 TTTTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4139470 5 - 5137665 TTTTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 45088 5 - 60632 TTTTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1954714 5 + 2427316 TTTTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1241561 5 + 1448899 TTTTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52980356 5 - 190850796 tttta i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8142379 5 - 15139346 tttta i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6931489 5 - 7304997 TTTAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342865 5 - 11631747 TTTTA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8583727 5 + 8790067 TTTTA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47946283 5 + 63241923 TTGTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053976 5 - 5279953 TTTTA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1832996 39 + 4188776 I e micMur3.chrUn_NW_017968520v1 1753629 77 + 3286835 I e mm10.chr5 76392962 0 + 151834684 C a score=45657.000000 s hg38.chr4_KI270787v1_alt 11131 3 + 111943 ATT s panTro5.chr4 119573433 3 - 194502333 ATT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120989712 3 - 195804263 ATT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4420780 3 - 17550833 ATT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69296246 3 - 118206036 ATT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111501227 3 - 190429646 ATT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110669336 3 - 189454096 ATT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13237155 3 + 26754465 ATT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4139475 3 - 5137665 ATT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 45093 3 - 60632 ATT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1954719 3 + 2427316 ATT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1241566 3 + 1448899 ATT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52980361 3 - 190850796 att i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8142384 3 - 15139346 att i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6931494 3 - 7304997 ATT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342870 3 - 11631747 ATT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8583732 3 + 8790067 CTT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76392962 3 + 151834684 ATT i mm10.chr5 C 0 C 0 s canFam3.chr13 47946288 3 + 63241923 ATT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053981 3 - 5279953 ATC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1832996 39 + 4188776 I e micMur3.chrUn_NW_017968520v1 1753629 77 + 3286835 I a score=553628.000000 s hg38.chr4_KI270787v1_alt 11134 35 + 111943 ACATATATGCAAACTAAGAATTAAATATAACATAG s panTro5.chr4 119573436 35 - 194502333 ACATATATGCAAACTAAGAATTAAATATAACATAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 120989715 35 - 195804263 ACATATATGCAAACTAAGAATTAAATATAACATAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4420783 35 - 17550833 ACATATATGCAAACTAAGAATTAAATATAACATAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69296249 35 - 118206036 ACATATGTGCAAACTAAGAATTAAATATAACATAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111501230 35 - 190429646 ACATATATGCAAACTAAGAATTAAATATAACATAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110669339 35 - 189454096 ACATATATGCAAACTAAGAATTAAATATAACATAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13237158 35 + 26754465 ACATATATGCAAACTAAGAATTAAATATAACATAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4139478 35 - 5137665 ACATATATGCAAACTAAGAATTAAATATAACATAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 45096 35 - 60632 ACATATATGCAAACTAAGAATTAAATATAACATAG i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1954722 35 + 2427316 ACATATATGCAAACTAAGAATTAAATATAACATAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1241569 35 + 1448899 ACATATATGCAAACTAAGAATTAAATATAATATAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52980364 35 - 190850796 acatatatataaactaagaattaaatataaCATAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8142387 35 - 15139346 acatatatataaactaagaattaaatataaCAGAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6931497 35 - 7304997 ACATATATATAAACTAAGAATTAAATATAACATAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342873 35 - 11631747 ACGTATATATAAACTAAGAATTAAATATAACATAG i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1833035 35 + 4188776 ACATATATGCAAACTAAAAATTAAATACAGCATAT i proCoq1.NW_012140747v1 I 39 C 0 s otoGar3.GL873602 8583735 35 + 8790067 ACATAGATGCAAACTAGAAATTAAATACAGCACAT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76392965 34 + 151834684 GCATATGTGC-AACTAAAGATGAAATGTTACCTAT i mm10.chr5 C 0 C 0 s canFam3.chr13 47946291 35 + 63241923 GCATATATGCAAACTAAAAATTAAATACAGTATAT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4053984 35 - 5279953 AAATATATGCAAACCAAAAATTAAATACAGTATAT i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1753629 77 + 3286835 I a score=7109395.000000 s hg38.chr4_KI270787v1_alt 11169 474 + 111943 ATTAGACTTCTAATAGGAGGCTCTGAGAAGAC--T--GTAACGTAATTT-CAAGTCTCATTTCTCCAGAGCTC-TTCAAGAATGGAGTCAGTCTAAAGGCCAGATAATATGAAACTAAATGAGCTTTGTTTCTGATTCTCT-----------GCCTGAGCCCCATC--------CATAGCCTGGTAAC-AC---------ATGCAAAGC-------------CCATAATGAATCTTCTTACTTCCTTGGTGAC-CACTTGGTCTAGGAAAAGTTCCAGGAAAAGG----------CATTCCTTCAGCTGAGGTTTATAGTGAATAGTAACCCA-TAAAAGTGACTGAAAAGTAGTCTATAAATATATATGCCTGAT----------------AAAAGTGATTAGcaatcaggaaatacttatttataatgtgtgagactatgggaaagacgaatgagatgtgttctttgccttca-agaaacctcagtctgctttggaagaTAAGATTTGC----TTTTTGCATTGATCTAATTGCTTTCTG-AAAAATGCAAGGA----- s panTro5.chr4 119573471 474 - 194502333 ATTAGACTTCTAATAGAAGGCTCTGAGAAGAC--T--GTAACGTAATTT-CAAGTCTCATTTCTCCAGAGCTC-TTCAAGAATGGAGTCAGTCTAAAGGCCAGATAATATGAAACTAAATGAGCTTTGTTTCTGATTCTCT-----------GCCTGAGCCCCATC--------CATAGCCTGGTAAC-AC---------ATGCAAAGC-------------CCGTAATCAATCTTCTTACTTCCTTGGTGAC-CACTTGGTCTAGGAAAAGTTCCAGGAAAAGG----------CATTCCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAAGTGACTGAAAAGTAGTCTATAAATATATATGCCTGAT----------------AAAAGTGATTAGcaatcaggaaatatttatttataatgtgtgagactatgggaaagacgaatgagatgtgttctttgccttca-agaaacctcagtctgctttagaagataAGATTTGC----TTTTTGCATTGATCTAATTGCTTTTTG-AAAAATGCAAGGA----- i panTro5.chr4 C 0 C 0 s panPan2.chr4 120989750 474 - 195804263 ATTAGACTTCTAATAGGAGGCTCTGAGAAGAC--T--GTAACGTAATTT-CAAGTCTCATTTCTCCAGAGCTC-TTCAAGAATGGAGTCAGTCTAAAGGCCAGATAATATGAAACTAAATGAGCTTTGTTTCTGATTCTCT-----------GCCTGAGCCCCATC--------CATAGCCTGGTAAC-AC---------ATGCAAAGC-------------CCATAATCAATCTTCTTACTTCCTTGGTGAC-CACTTGGTCTAGGAAAAGTTCCAGGAAAAGG----------CATTCCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAAGTGACTGAAAAGTAGTCTATAAATATATATGCCTGAT----------------AAAAGTGATTAGcaatcaggaaatatttatttataatgtgtgagactatgggaaagacgaatgagatgtgttctttgccttca-agaaacctcagtctgctttagaagataAGATTTGC----TTTTTGCATTGATCTAATTGCTTTTTG-AAAAATGCAAGGA----- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4420818 475 - 17550833 ATTAGACTTCTAATAGCAGGCTCTGAGAAGAC--T--GTAATGTAATTT-TAAGTCTCATTTCTCCAGAGCTC-TTCAAGAATGGAGTCAGTCTAAAGGCCAGATAATATGAAACTAAATGAGCTTTGTTTCTGATTCTCT-----------GCCTGAGCCCCATC--------CATAGCCTGGTAAC-AC---------ATGCAAAGC-------------CCATAATCAATCTTCTTACTTCCTTGGTGAA-CACTTGGTCTAGGAAAAGTTCCAGGAAAAGG----------CATTCCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAAGTGACTGAAAAGTAGTCTATAAATATATATGCCTGAT----------------AAAAGTGATTAGCTAtcaggaaatatttatttataatgtgtgagactatgggaaagatgaatgagatgtgttctttgccttca-agaaacctcagtctgctttagaagataAGATTTGC----TTTTTGCATTGATCTAATTGCTTTCTGAAAAAATGCAAGGA----- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69296284 474 - 118206036 ATTAGACTTCTAATAGCAGGCTCTGAGAAGAC--T--GTAATGTAATTT-TAAGTCTCATTTCTCCAGAGCTC-TTCAAGAATGGAGTCAGTCTAAAGCCCAGATAATATGAAACTAAATGAGCTTTGTTTCTGATTCCCT-----------GCCTGAGCCCCATC--------CATAGCCTGGTAAC-AC---------ATGCAAAGC-------------CCATAATCAATCTTCTTACTTCCTTGGTGAC-CACTTGGTCTAGGAAAAGTTCTAGGAAAAGG----------CATTCCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAAGTGACTGAAAAGTAGTCTATAAATATATATGCCTGAT----------------AAAAGTGATTAGcaatcaggaaatatttatttataatgtgtgagaccatgagaaagacgaatgagatgtgttctttgccttca-agaaacctcagtctgctttagaagataAGATTTGC----TTTTTGCATTGATCTAATTGCTTTCTG-AAAAATGCAAGGA----- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111501265 456 - 190429646 ATTAGACTTCTAATAGCAGGCTCTGAGAAGAC--T--GTAATGTAATTT-TAAGCCTCATTTCTCCAGAGCTC-ATCAAGAATGG----AGTCTAAAGGCCAGATCATATGAAACCAAATGAGTTTTGTTTCAGATTCTCT-----------GCCTGAGCCCCATC--------CATAGCCTAGCAAC-AC---------ATGCAAAGC-------------CCATAATCCATCTTTTTACTTCCTTGGTGAC-CACTTG---------AAGTTCTGGGAAAAGG----------AATTTCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAAGTGACTGAAAAGTAGTCTATAAATATATATGCCTGAA----------------AAAAGTGATTAGcaatcaggaaatatttatttataatgtgtgagactatggaaaagacgaatgagatgtgttctttgccttca-agaaacctcagtctgctttag-----aagaTTTGC----TTTTTGCATTGATCTACTTGCTTTCCA-AAAAATGCAAGGA----- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110669374 456 - 189454096 ATTAGACTTCTAATAGCAGGCTCTGAGAAGAC--T--GTAATGTAATTT-TAAGCCTCATTTCTCCAGAGCTC-ATCAAGAATGG----AGTCTAAAGGCCAGATCATATGAAACCAAATGAGTTTTGTTTCAGATTCTCT-----------GCCTGAGCCCCATC--------CATAGCCTAGCAAC-AC---------ATGCAAAGC-------------CCATAATCCATCTTTTTACTTCCTTGGTGAC-CACTTG---------AAGTTCTGGGAAAAGG----------AATTTCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAAGTGACTGAAAAGTAGTCTATAAATATATATGCCTGAA----------------AAAAGTGATTAGCAATCAGGAAATATTTATTTATAATGTGTGAGACTATGGAAAAGACGAATGAGATGTGTTCTTTGCCTTCA-AGAAACCTCAGTCTGCTTTAG-----AAGATTTGC----TTTTTGCATTGATCTACTTGCTTTCCA-AAAAATGCAAGGA----- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13237193 456 + 26754465 ATTAGACTTCTAATAGCAGGCTCTGAGAAGAC--T--GTAATGTAATTT-TAAGCCTCATTTCTCCAGAGCTC-ATCAAGAATGG----AGTCTAAAGGCCAGATCATATGAAACCAAATGAGTTTTGTTTCAGATTCTCT-----------GCCTGAGCCCTATC--------CATAGCCTAGCAAC-AC---------ATGCAAAGC-------------CCATAATCCATCTTTTTACTTCCTTGGTGAC-CACTTG---------AAGTTCTGGGAAAAGG----------AATTTCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAAGTGACTGAAAAGTAGTCTATAAATATATATGCCTGAA----------------AAAAGTGATTAGcaatcaggaaatatttatttataatgtgtgagactatggaaaagacgaatgagatgtgttctttgccttca-agaaacctcagtctgctttag-----aagaTTTGC----TTTTTGCATTGATCTACTTGCTTTCCA-AAAAATGCAAGGA----- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4139513 456 - 5137665 ATTAGACTTCTAATAGCAGGCTCTGAGAAGAC--T--GTAATGTAATTT-TAAGCCTCATTTCTCCAGAGCTC-ATCAAGAATGG----AGTCTAAAGGCCAGATCATATGAAACCAAATGAGTTTTGTTTCAGATTCTCT-----------GCCTGAGCCCCATC--------CATAGCCTAGCAAC-AC---------ATGCAAAGC-------------CCATAATCCATCTTTTTACTTCCTTGGTGAC-CACTTG---------AAGTTCTGGGAAAAGG----------AATTTCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAAGTGACTGAAAAGTAGTCTATAAATATATATGCCTGAA----------------AAAAGTGATTAGcaatcaggaaatatttatttataatgtgtgagactatggaaaagacgaatgagatgtgttctttgccttca-agaaacctcagtctgctttag-----aagaTTTGC----TTTTTGCATTGATCTACTTGCTTTCCA-AAAAATGCAAGGA----- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 45131 443 - 60632 ATTAGACTTCTAATAGCAGGCTCTGAGAAGAC--T--GTAATGTAATTT-TAAGTCTCATTTCTCCAGAGCTC-ATCAAGAATGG----AGTCTAAATGCCAGATCATATGAAACCAAATGAGTTTTGTTTCAGATTCTCT-----------GCCTGAGCCTCATC--------CACAGCCTAGCAAC-AC---------ATGCAAAGC-------------CCATAATCCATCTTTTTACTTCCTTGGTGAC-CACTTG---------AAGTTCTGGGAAAAGG----------AATTTCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAAGTGACTGAAAAGTAGTCTATAAATATATATGCCTGAA----------------AAAAGTGATTAGCAATCAGGAAATATTTATTTATAATGTGTGAGACT-------------ATAAGGTGTATTCTTTGCCTTCA-AGAAACCTCAGTCTGCTTTAG-----AAGATTTGC----TTTTTGCATTGATCTACTTGCTTTCCA-AAAAATGCAAGGA----- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1954757 456 + 2427316 ATTAGACTTCTAATAGCAGGCTCTGAGAAGAC--T--GTAATGTAATTT-TAAGCCTCATTTCTCCAGAGCTC-ATCAAGAATGG----AGTCTAAAGGCCAGATCATATGAAACCAAATGAGTTTTGTTTCAGATTCTCT-----------GCCTGAGCCCCATC--------CATAGCCTAGCAAC-AC---------ATGCAAAGC-------------CCATAATCCATCTTTTTACTTCCTTGGTGAC-CACTTG---------AAGTTCTGGGAAAAGG----------AATTTCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAAGTGACTGAAAAGTAGTCTATAAATATATATGCCTGAA----------------AAAAGTGATTAGcaatcaggaaatatttatttataatgtgtgagactatggaaaagatgaatgagatgtgttctttgccttca-agaaacctcagtctgctttag-----aagaTTTGC----TTTTTGCATTGATCTACTTGCTTTCCA-AAAAATGCAAAGA----- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1241604 456 + 1448899 ATTAGACTTCTAATAGCAGGCTCTGAGAAGAC--T--GTAATGTAATTT-TAAGTCTCATTTCTCCAGAACTC-ATCAAGAATGG----AGTCTAAAGGCCAGATCATATGAAACCAAATGAGTTTTGTTTCAGATTCTCT-----------GCCTGAGCCCCATC--------CATAGCCTAGCAAC-AC---------ATGCAAAGC-------------CCATAATCCATCTTTTTACTTCCTTGGTGAC-CACTTG---------AAGTTCTGGGAAAACG----------AATTTCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAAGTGACTGAAAAGTAGTCTATAAATATATATGCCTGAT----------------AAAAGTGATTAGcaatcaggaaatatttatttataatgtgtgagactatgggaaagatgaatgagatgtgttctttgccttca-agaaacctcagtctgctttag-----aagaTTTGC----TTTTTGCATTGATCTACTTGCTTTCCA-AAAAATGCAAGGA----- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52980399 458 - 190850796 ATTAGACTTCTAATAGCAGGCTCTGAGAAAAC--T--GTAATGTAATTT-TAAGTCTCATTTTCCCAGAGCTC-ATCAGGAATGGAGTCAGACTAAAAGCCAGATAATAGGAAACCAAATAAGCTTTGTTTCTGATTCTCT-----------GCCTGAGCCCCATC--------CATAGCCTGGCAAC-AC---------ATTCCAAGG-------------CCATAA-------TCTTACTTCCTTAGTGAC-CACTTA---------AAGTTCTAGAAAAAGG----------AATTTCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAACTAACTGAAAAGTAGTCTAAAAATATATATGCTTGAT----------------AAAAATCATTACAAATCAGGatatatttatttataatatatGAGACTATGGGAAAGACTAATGAGATGTGTTCTTTGCCTTCA-AGAAACCTCACACTGCTTTAGAAGATAAGATTTGC----TTTTTGCATTGATCTAATTGCTTTCTG-GAAAATGCAAAAA----- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8142422 466 - 15139346 ATTAGACTTCTAATAGCAGGCTCTGAGAAAAC--T--GTAATGTAATTT-TAAGTCTCATTTTTCCAGAGCTC-ATCAAGAATGGAGTCAGTCTAAAAGCCAGATAATAGGAGACCAAATGAGCTTTGTTTCTGATTCTCT-----------GCCGGAGCCCCAAC--------CATAGCCTGACAAC-AC---------ATTCCAAGG-------------CCATAATCAATCCTCTTACTTCCTTGGTGACTTCCTTG---------AAGTTATAGAAAAAGG----------CATTTCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAACTGACTGAAAAGTAGTTTATAAATATATATGCTTGAT----------------AAAAATGATTACAAAtcaggaaatatttatttataatatataagaccatgggaaagactaacgagatgtgttctttgccttca-agaaacctcagtctgctttagaagataAGATTTGC----TTTTTGCATTGATCTAATTGCTTTCTG-AAAAATGCAAAAA----- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6931532 465 - 7304997 ATTAGACTTCTAATAGCAGGCTCTGAGAAAAC--C--GTAATGTAATTT-TAAGTCTCATTTTTCCAGAGCTA-ATCAAGAATGGAGTCAGCCTAAAAGCCAGATAATAGGAAACCAAATGCGCTTTGTTTCTGATCCTCT-----------GCCTGAGCCCCATC--------CATAGCCTGACAAC-AC---------ATTCCAAGG-------------CCATAATCAGTCCTCTTACTTCCTTGGTGAG-CACTTG---------AAGTTCTAGAAAAAGG----------CATTTCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAACTGACTGAAAAGTAGTCTATAAATATATATGCTTGAT----------------AAAAATGATTACAAAtcaggaaatatttatttataatatatgagactatggaaaagactaatgagatgtgttctttgccctca-agaaacctcagtctgctttagaagataagattTGC----TTTTCGCATTGATCTAATTGCTTTCTG-GAAAATGCAAAAA----- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9342908 463 - 11631747 ATTAGACTTCTAATAGCAGGCTCTGAGAAAAC--T--GTAATGTAATTT-TAAGTCTCATTTTTCCAGAGCTC-ATCAAGAATT--GTCAGTCTAAAAGCCAGATAATAGGAAACCAAATGAGCTTTGTTTCTGATTCTCT-----------GCCTGAGCCCCATC--------CATAGTCTGACAAC-AC---------ATTCCAAGG-------------CCATAATCAGTCCTCTTACTTCCTTGGTGAC-CACTTG---------AAGTTCTAGAAAAAGG----------CATTTCTTCAGTTGAGGTTTATAGTGAATAGTAACCCA-TAAAACTGACTGAAAAGTAGTCTATAAATATATATGCTTGAT----------------AAAAATGATTACAAAtcaggaaatatttatttataatatatgagactatgggaaagactaatgagatgtgttctttgccttca-agaaacctcagtctgctttagaagataagattTGC----TTTTTGCATTGATCTAATTGCTTTCTG-GAAAATGCAAAAA----- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1753706 466 + 3286835 ATTAGACTTCTAATAGCAGGCTCTGAGAAGACTGT--GTAATGTAATCT-AAAGTCTCATTGTTCCAGAGCTC-ATCAGGAATGGAGTCAGTCTAAAAGCCAGATAATATGAAGCCAAATGAGCTTTGTTTCTGATTCTCT-----------GCCTGAGCTGCACC--------CATAGCATGGTGACAAC---------ATGCAAAGG-------------CCACGAGCAGCCCTCTTACTTCCTTGGTGAC-CACCTG---------AAGTTCCAGGAAAAGG----------CACTTCTTCATCTGAAATTTACAGTGAACAATAATCCA-CCAAAGTGATTG-AAAGTATCTTATAAATATATAATCCTGAT----------------AAAAATGATTAGcaatcaggaaacattta-ttggaatatgtgagactgggggaaagatgaatgagatgtgatttttgccttcg-agaaacctcagtctgctttggaagacaAGATTTGT----TCTTTGAATTGATCTAATTGCATTCTG-AAAAATACAAGGA----- i micMur3.chrUn_NW_017968520v1 I 77 I 185 s proCoq1.NW_012140747v1 1833070 466 + 4188776 ATTAGACTTCTAGTAGCAGGCTCTGAGAAGAC--T--GTAATGTAATCT-CAAGTCTCATTCCTCCAGAGCTC-ATCAGGAATGGAGCCAGTCTAAAAGCCAGATAACATGAAGCCAAATGAGCTTTGTTTCTGAGTCTCT-----------GCCCGAGCTGCATC--------CGTAGCATGGTGACAAC---------ATGCAAAGG-------------CCATGATCAGTCCTCTTACTTCCTTGGTGAC-CACCTG---------AAGTTCTAGGAAAAAG----------CACTTCTTCATTTGAAATTTACAGTGAATGATAACCCA-CAAAAGTGACTGAAAAGTATTTTATAAATATACATGCCTGAT----------------AAAAATGATTAGcaatcaggaaacatttatttagaatatgtgagactgtgggaaagatgaatgagatgtgatctttgccttca-agaaacctcagtctgctttggaagaTAAGATTTGT----TCTTTGAATTGATCTAATTGCATTCTG-AAAAATACAAGGA----- i proCoq1.NW_012140747v1 C 0 I 77 s otoGar3.GL873602 8583770 480 + 8790067 ATTAGGCTTCTAATAGCAGGCTCTGAGAAGACTGT--GTAATGTGATCT-T--GCCTCATTCCTCCAGAGCTC-ATGGAGAATGGAGTCAGTCTAAAAGCCAGAAAGCATGAAGCCAAATGA-CCTTGTTTCTGATTCTCTCCACCTGCAGCACCTGTGCCCCACC--------TGCAGCACCATGACAAC---------ATGCAAAGG-------------CCATGATCTGTCCTCTTTCTTCCTTGGTGAC-CACCTGT--------AAATTCTAGGAAAAGG----------CACCTCTTTGTTTGGAGTTTACAGTGAATGATAACCCA-CAAAAGTGACCAAAAACTATTTTATAAATGTACATGTCTGAT-----------------AAAATGATTAGCAATCA-GAAATATTTATTTAGAATATATGAGACTGTGGGAAAGATGAATGAGATGTGATCTTTGCCTTGACAAAGACTTCAGTCTGTTTTGGAAGATAAGGTCTTCCTTATCTTTGAATTGATCTAATTACATTCTG-AAAAATACAAGGG----- i otoGar3.GL873602 C 0 I 1 s mm10.chr5 76392999 498 + 151834684 ATTAGAC-TCTAATAGCAGGCTCTGGGAAGAC--TACATAATCAAGTCG-GAAGTCTCCTGTACCCAGAGAGC-GCCGGGAAAGGAGGCATTCTGATCTCAGCACAAAGTGAGGCAAAATGAGGTTTAGTTCTCATTCTCT-----------GTCGGACCCTCACC--------CGCAGACGTGGAGC-ACGGTGAGAGTATGCTGAGGGGACGCGACTTTTCCGTAATCAACTTCCTCATTTCCGTGGTGAC-AACCTG---------AAACCCTAAGAGAGGG----------TCTTTTTCCATTTGAAGTCTGTAA-ACATGACAACCCACTAAACATCATTGCGAGGCATTTTATCCCTGCACGTGCCTGGGGGTGGGGGGTGTGGGGGGGAGTAAGGAGCAGTCAGGAA----TTCCTTAGAATGGAGGCAGCTGTGGGAAGGATGAGTGTGATCTCATCTATTGGGGAA-AGAAATCCCAGGATGCTTTGCAAGACAAGATTTGT----GCTTTGAGCTGATCTAATTGCA--CCG-ACGAACTCAAAGG----- i mm10.chr5 C 0 C 0 s canFam3.chr13 47946326 463 + 63241923 ATTAGACTTCTAATAGCAGGCTCTAAGAAGAC--T----AATTTAATCT-GAAGCCTCATTCCTCCAGAGCTT-ATAAAAAATGGAGTTAGTATAAAAGCCAGATGATGTGAGGCCAAATGAGTTTTGTTTCTGATTCTCT-----------GCCTGAGCCCCATCCAGAAAGACACAGCATGGTGACAAA---------ATACAAAGG-------------CCATAATCAGTCATCT---TTCACTGGTCAC-CACCTG---------AAGTTCTAGGAAAATG----------TATAGCTTCTTTTAAAGCACATAGTAAATGATAAGCAA--AGAAGTTATTGAAAAGTATTTTATAAATATACATGCCTGAT----------------GTAAATGACCAGCAATCGGGaaatatttatttaccgtgtgagagactgtagaaaagatgaatgacatgtcatctttgccttga-agaaacttcaggctgctttgg-----aagacaTGA----TCTTCAAATTGATCTCACTGCATTCTG-AAAAATACAATGT----- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4054019 479 - 5279953 ATGAGACTTCTGATAGCAGACTCTGAGAAGACTGT--GTAATTCAATCTATATGCTTCATTTCCCCTGAACTCAATCAAGAATGGAGTCAATCTACAAGCCGGATGATGTGAGGTCAAATGAGCTCTGTTTCTAGTTCCCT-----------GCGTGAGTCCCACC-------------CCAGAAGACAGC---------ATTTGAAGA-------------CCATAATTGGTCACCTGACCCCGTTGGTGAC-CACCCA---------AAGTTCTACACAAGGGCCTGCATCCTCATTTCTTCATTTGAGGTTTACAGTGAATGCTAACTCA-CGAAAGTTACTAAAAAGTATTTTATAAATATACATTCCTGAT----------------GAAA-TGATTAGcattcaggaaatatttatttaggttgggagacactgtgggaaggatgactgagatgcgacccctgtcttca-agaaacgtcaatcctctgtggaggaCAAGATTTAT----TCTATGAATTGACCTAATTGCATACAA-AAAAACACAAGTATCTAA i dasNov3.JH568349 C 0 C 0 a score=897550.000000 s hg38.chr4_KI270787v1_alt 11643 76 + 111943 C--TTTTTAAAAAATGAGCTAAATTTATGTGAGGAAGAAATTAT--TGTTTTCCATTctcaatatgtaccaggcactgaa s panTro5.chr4 119573945 78 - 194502333 C--TTTTTAAAAAATGAGCTAAATTTATGTGAGGAAGAAATTATTATGTTTTCCATTctcaatatgtaccaggcactgaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 120990224 78 - 195804263 C--TTTTTAAAAAATGAGCTAAATTTATGTGAGGAAGAAATTATTATGTTTTCCATTctcaatatgtaccaggcactgaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4421293 78 - 17550833 C--TTTTTTAAAAATGAGCTAAATTTATGTGAGGAAGAAATTATTATGTTTTCCATTctcaatatgtaccaggaactgaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69296758 78 - 118206036 C--TTTTTAAAAAATGAGCTAAATTTATGTGAGGAAGAAATTGTTATGTTTTCCATTcttaatatgtaccaggcactgaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111501721 78 - 190429646 C--TTTTAAAAAAATGAGCTAAATTTATGTGAGGAAGAAATTGTTACGTTTTCCATActtaatatgtaccaggcactgca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110669830 78 - 189454096 C--TTTTTAAAAAATGAGCTAAATTTATGTGAGGAAGAAATTGTTACGTTTTCCATActtaatatgtaccaggcactgca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13237649 78 + 26754465 C--TTTTTAAAAAATGAGCTAAATTTATGTGAGGAAGAAATTGTTACGTTTTCCATActtaatatgtaccaggcactgca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4139969 78 - 5137665 C--TTTTTAAAAAATGAGCTAAATTTATGTGAGGAAGAAATTGTTACATTTTCCATgcttaatatgtaccaggcactgga i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 45574 78 - 60632 C--TTTTTAAAAAATGAGCTAAATTTATGTGAGGAAGAAATTGTTACATTTTCCATActtaatatgtaccaggcactgga i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1955213 78 + 2427316 C--TTTTTAAAAAATGAGCTAAATTTATGTGAGGAAGAAATTGTTACGTTTTCCATActtaatatgtaccaggcactgca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1242060 78 + 1448899 C--TTTTTAAAAAATGAGCTAAATTTATGTGAGGAAGAAATTGTCACGTTTTCCATActtaatatgtaccaggcactgga i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52980857 80 - 190850796 CTTTTTTTAAAAAATGAGCTAAATTTATGTGAGGAAGAAATGATTATATTTTCTATCcttaatatgtgccaggcactgga i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8142888 80 - 15139346 CTTTTTTTAAAAAATGAGCTAAATTTATGTGAGGAAGAAATGATTATGTTTTCTATActtaatatgtaccaggcactgga i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6931997 80 - 7304997 CTTTTTTTAAAAAATGAGCTAAATTTATGTGAGGAAGAAATGATTATGTTTTCTATActtaatatgtgccaggcactgga i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9343371 80 - 11631747 CTTTTTTTCAAAAATGAGCTAAATTTATGTGAGGAAGAAATGATTATGTTTTCTATActtaatatgtgccaggcagtgga i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8584251 55 + 8790067 C--TTTTTTTTTAATAAGTTGAATTCATGAAAGgaa----------tgtt------------tatgtaccaggcactgg- i otoGar3.GL873602 I 1 C 0 s mm10.chr5 76393497 70 + 151834684 --TCCATTTTGTAATGAGTTGAATTCACAGAAGGAAGACCTGAC-ACGTTTATCATATCTACTGCGTGCTGAA------- i mm10.chr5 C 0 I 1 s canFam3.chr13 47946789 78 + 63241923 C--TATTTTTTTAATGAACTAAATTCATGTAAGGAGGgaattgacatgttttgcatacctaatatgtaccaggcattggg i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4054498 77 - 5279953 --TTTTTTAAAAAATGAACTGAATTCAAGTAAGGAGAGAGTTGACAGGCTTTGC-TAcctagtatgtgccaggcactggg i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1833536 77 + 4188776 I e micMur3.chrUn_NW_017968520v1 1754172 185 + 3286835 I a score=1100995.000000 s hg38.chr4_KI270787v1_alt 11719 82 + 111943 cacatatta-----tctcacttaatgctcttgccaattctgtgaagtggatataattattctcattttttagatgagaaaactgagg s panTro5.chr4 119574023 82 - 194502333 cacatatta-----tctcacttaatgctcttgccaattctgtgaagtggatataattattctcattttttagatgagaaaactgagg i panTro5.chr4 C 0 C 0 s panPan2.chr4 120990302 82 - 195804263 cacatatta-----tctcacttaatgctcttgccaattctgtgaagtggatataattattctcattttttagatgagaaaactgagg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4421371 82 - 17550833 cacatatta-----tctcacttaatgctcttgccaattctgtgaagtggatataattattctcattttttacatgagaaaactgagg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69296836 82 - 118206036 cacatattg-----tctcacttaatgctcttggcaattctgtgaagtggatataattattctcattttttagatgagaaaactgagg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111501799 82 - 190429646 cacatacta-----tttcacttaatgctcttggcaattctgtgaagtggatataattattctcattttttaggtgagaaaactgagg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110669908 82 - 189454096 cacatacta-----tctcgcttaatgctcttggcaattctgtgaagtggatataattattctcattttttaggtgagaaaactgagg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13237727 82 + 26754465 cacatacta-----tctcgcttaatgctcttggcaattctgtgaagtggatataattattctcattttttaggtgagaaaactgagg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4140047 82 - 5137665 cacatatta-----tctcacttaatgctcttggcaattctgtgaagtggatataattattctcattttttagatgagaaaactgagg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 45652 82 - 60632 cacatatta-----tctcacttaatgctcttggcaattctgtgaagtggatataattattctcattttttaggtgagaaaactgagg i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1955291 82 + 2427316 cacatacta-----tctcacttaatgctcttggcaattctgtgaagtggatataattattctcattttttaggtgagaaaactgagg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1242138 82 + 1448899 cacatatta-----tctcacttaatgctcttggcaattctgtgaagtagatataattattctcattttttagatgagaaaactgagg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52980937 82 - 190850796 cacatatta-----tctcacttaatgctgacagaaattctgtgatgtggatataagtattctcattttgtagatgagaaaactgagg i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8142968 82 - 15139346 cacatatga-----tctcacttaatgctgacagcaattctgtgatgtggatataagtattctcattttgtagatgagaaaactgagg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6932077 82 - 7304997 cacatatta-----tctcacttaatgctgacggcaattctgtgatatgggtataagtattctcattttgtagatgagaaaactgagg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9343451 82 - 11631747 cacatatta-----tctcacttaatgctgacggcaattctgtgatgtggatataagtattttcattttgtagatgagaaaactgagg i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1833613 71 + 4188776 catatatta-----tctcacttaatgctcacagcaatgctgtgaagtggatataattattctcattttgtagatga----------- i proCoq1.NW_012140747v1 I 77 C 0 s otoGar3.GL873602 8584306 73 + 8790067 catgtatta-----tctta---------cacagcaaggctgtgaagtggctataattattctcattttgtagatgaagaaagtaagg i otoGar3.GL873602 C 0 I 3556 s mm10.chr5 76393568 86 + 151834684 CTCATAGGGTGGATTCTCATGTGGTGTTCA-AGCATTGCTGGGAAGCAGATACAATTACTTTCGATTTGTAGATAGGGTAATGGAAG i mm10.chr5 I 1 I 1 s canFam3.chr13 47946867 82 + 63241923 catattcta-----tctcacttgatcttcacagtaatgctatgaaataggtatcattcttctcattttgtaggtaagcaaactaagg i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4054575 70 - 5279953 catatatta-----cctcacttaatcttcacagcaatgccaggaagaggatataatgcttt------------ggagtaagttgagc i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1754172 185 + 3286835 I a score=466684.000000 s hg38.chr4_KI270787v1_alt 11801 45 + 111943 gtcatacaggttaggtgacttgggtaaggtc----cat-------aggagtggcat s panTro5.chr4 119574105 45 - 194502333 gtcatacaggttaggtgacttgggtaaggtc----cat-------aggagtggcat i panTro5.chr4 C 0 C 0 s panPan2.chr4 120990384 45 - 195804263 gtcatacaggttaggtgacttgggtaaggtc----cat-------aggagtggcat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4421453 45 - 17550833 gtcatacaggttaggtgacttgggtaaggtc----cat-------aggagtggcat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69296918 45 - 118206036 gtcatacaggttaggtgacttggataaggtc----cat-------cagagtggcat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111501881 45 - 190429646 gtcatgcaggttaggtgacttggataaggtc----cat-------aggagtggcat i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110669990 45 - 189454096 gtcatgcaggttaggtgacttggataaggtc----cat-------aggagtggcat i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13237809 45 + 26754465 gtcatgcaggttaggtgacttggataaggtc----cat-------aggagtggcat i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4140129 45 - 5137665 gtcatgcaggttaggtgacttggataaggtc----cac-------aggagtggcat i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 45734 45 - 60632 gtcatgcagtttaggtgacttgcataaggtc----cat-------aggagtggcat i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1955373 45 + 2427316 gtcatgcaggttaggtgacttggataaggtc----cat-------aggagtggcat i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1242220 45 + 1448899 gtcatgcaggttaggtgacttggataaggtc----cat-------aggagtggcgt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52981019 46 - 190850796 ctcatataggttaagtgacttggataaggtc----CAT------AAAGAGTGTCAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8143050 46 - 15139346 ctcatataggttaggtgacttggataaggtc----cat------aaagagtggcat i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6932159 46 - 7304997 ctcatataggttaggtgacttggataaggtc----cat------aaagagtgtcat i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9343533 46 - 11631747 ctcatataggttaggtgacttggataaggtc----cat------aaagagtggcat i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1833684 48 + 4188776 -cgatacagtttaggtgactcagaaaaggtcacataat-------gagagtgtgac i proCoq1.NW_012140747v1 C 0 I 2 s mm10.chr5 76393655 45 + 151834684 GCCTACCAAGGGTGCTCCCTGGAGTGGGCTA----TAG-------AAAACTAGAAA i mm10.chr5 I 1 I 7 s canFam3.chr13 47946949 36 + 63241923 --catacaggcaagatgacttgggataaggt----cat-------ataa------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4054645 52 - 5279953 cacatgcaagtgaggtgatttggaagaaact----caaataactagggagtgacca i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1754172 185 + 3286835 I e otoGar3.GL873602 8584379 3556 + 8790067 I a score=1518959.000000 s hg38.chr4_KI270787v1_alt 11846 117 + 111943 ttccaagaaggcaatg-cagaccaatgtctctggatccaatgtccacactattttcactacCTCT--TATGGTAGCAGGGAGAATGGAAGGGAAGAAATAATTGTGAAATACAC-------------TTTGAA s panTro5.chr4 119574150 117 - 194502333 ttccaagaaggcaatg-cagaccaatgtctctggatccaatgtccacactattttcactAACTCT--TATGGTAGCAGGGAGAATGGAAGGGAAGAAATAATTGTGAAATACAC-------------TTTGAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120990429 117 - 195804263 ttccaagaaggcaatg-cagaccaatgtctctggatccaatgtccacactattttcactAACTCT--TATGGTAGCAGGGAGAATGGAAGGGAAGAAATAATTGTGAAATACAC-------------TTTGAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4421498 117 - 17550833 ttccaagaaggcaatg-cagaccaatgtctctggatccagtgtccacactattttcactaccacT--GATGGTAGCAGGGAGAATGGAAGGGAAGAAATAATTGTGAAATACAC-------------TTTGAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69296963 130 - 118206036 ttccaagaaggcaatg-cagaccaatgtttctggatccaatgtccacactattttcactaccacA--TATGGTAGCAGGGAGAATGGAAGGGAAGAAATAATTGTAAAATACACAAATAAttataaattttaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111501926 117 - 190429646 ttccaagaaggcagtg-cagaccaatgtctctggatccagtgtccacactattttcactaccacT--GATGGTAGCAGGGAGAATGGAAGGGAAGAAATAATTGTGAAATACAC-------------TTTGAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110670035 117 - 189454096 ttccaagaaggcagtg-cagaccaatgtctctggatccagtgtccacactattttcactaccacT--GATGGTAGCAGGGAGAATGGAAGGGAAGAAATAATTGTGAAATACAC-------------TTTGAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13237854 117 + 26754465 ttccaagaaggcagtg-cagaccaatgtctctggatccagtgtccacactattttcactaccacT--GATGGTAGCAGGGAGAATGGAAGGGAAGAAATAATTGTGAAATACAC-------------TTTGAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4140174 117 - 5137665 ttccaagaaggcagtg-cagaccaatgtctctggatccagtgtccacactattttcactaccacT--GATGGTAGCAGGGAGAATGGAAGGGAAGAAATAATTGTGAAATACAC-------------TTTGAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 45779 117 - 60632 ttccaagaaggcagtg-cagacctgtgtctctggatccagtgtccacactattttcactatcacT--GATGGTAGCAGGGAGAATGGAAGGGAAGAAATAATTGTGAAATACAC-------------TTTGAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1955418 117 + 2427316 ttccaagaaggcagtg-cagaccaatgtctctgggtccagtgtccacactattttcactaccacT--GATGGTAGCAGGGAGAATGGAAGGGAAGAAATAATTGTGAAATACAC-------------TTTGAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1242265 117 + 1448899 ttccaagaaggcagtg-cagaccaatgtctctggatccaatgtccacactattttcactaccacT--GATGGCAGCAGGGAGAATGGAAGGGAAGAAATAATTGTGAAATACAC-------------TTTGAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52981065 90 - 190850796 TTCCAA-AAGGCAATG-CAGAATAA---------------TGCCCACACTATTTTCACTACTACT--GATGGTAGCAGGGAGAATGGAAGGGAG-----------GAAATATAC-------------TTTGAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8143096 102 - 15139346 ttccaagaAGGCAATG-CAGACCAA---------------TGTCCACACAATTTTCACTATCACT--GATGGTAGCAGGGAGAATGGAAGGGAGGAAATCATTGTGAAATATAC-------------TTTGAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6932205 98 - 7304997 ttccaagaaggcaatg-cagaccaa---------------tgtccacactattttcactaccacT--GATGGTAGCAGGGAGAATGGAAGGGAGGA----ATTGTGAAATATAC-------------TTTGAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9343579 102 - 11631747 ttccaagaaggcaatg-cagaccaa---------------tgtccgcactattttcactaccacT--GATGGTAGCAGGGAGAATGGAAGGGAAGAAATCATTGTGAAATATAC-------------TTTGAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1754357 117 + 3286835 ttccaagaaggcaaca-caggccaatgtttctggctctaacgtccatgctattttcactacccca--TATGGTAGTAGGGAGAACGGAAGGGAAGAAATTGTTGTGAAATATAC-------------TTTGAA i micMur3.chrUn_NW_017968520v1 I 185 I 43 s proCoq1.NW_012140747v1 1833734 117 + 4188776 ttccaagaaggcaaca-caggccaatgtttctggatctgacgtccacgctattttcactaccacA--TATGGTAGTAGGGAAAACGGGAGGGAAGAAATTATTGTGAAATATAC-------------TTTGAA i proCoq1.NW_012140747v1 I 2 C 0 s mm10.chr5 76393707 105 + 151834684 TATGAAGAAGGCAACATCTGGCCAGGATCTCTGAATCCAGCGTCCTGAC-ATTTCCGTTACCACTAAGAAGGCAGCATAGAGGAAGTGGGGAGAGAAA--------------AT-------------TTTCAT i mm10.chr5 I 7 C 0 s canFam3.chr13 47946985 104 + 63241923 --ccagtaagccaata-caggccaaaggctccgg-tccaatgtccgtgctattttcattaccacT--G------GGATGGAAAATGGGAGAAAAGAAA---TTATGAGAT-TAC-------------TTTGAA i canFam3.chr13 C 0 I 1 s dasNov3.JH568349 4054697 115 - 5279953 ttctaagaaggcaatg-caggcc----tctgtgggttcaatgtccatcctattttcaTGACCCCCGGGACAGTAGAGGGGAGAATGGATGGGAAGAAATCACTGTGAGAAACAT-------------TGTAAA i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8584379 3556 + 8790067 I a score=41122.000000 s hg38.chr4_KI270787v1_alt 11963 4 + 111943 GA--AA s panTro5.chr4 119574267 4 - 194502333 GA--Aa i panTro5.chr4 C 0 C 0 s panPan2.chr4 120990546 4 - 195804263 GA--Aa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4421615 4 - 17550833 GA--AA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69297093 6 - 118206036 aattta i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111502043 4 - 190429646 GA--AA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110670152 4 - 189454096 GA--AA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13237971 4 + 26754465 GA--AA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4140291 4 - 5137665 GA--AA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 45896 4 - 60632 GA--AA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1955535 4 + 2427316 GA--AA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1242382 4 + 1448899 GA--AA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52981155 4 - 190850796 GA--AA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8143198 4 - 15139346 GA--AA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6932303 4 - 7304997 GA--AA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9343681 4 - 11631747 GA--AA i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1833851 4 + 4188776 AA--AA i proCoq1.NW_012140747v1 C 0 I 104 s mm10.chr5 76393812 4 + 151834684 GA--AA i mm10.chr5 C 0 C 0 s canFam3.chr13 47947090 3 + 63241923 GA--A- i canFam3.chr13 I 1 I 1 s dasNov3.JH568349 4054812 4 - 5279953 GG--AA i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1754474 43 + 3286835 I e otoGar3.GL873602 8584379 3556 + 8790067 I a score=294881.000000 s hg38.chr4_KI270787v1_alt 11967 90 + 111943 TAAA---TTATAAATTTTAAAATTTATAGAATTTAAAAAGTTTTTTTAAATTA-------TAAAATTTATAATTTTTATAATTTCTTGAATAGGGATGTT- s panTro5.chr4 119574271 97 - 194502333 taaa---ttataaattttaaaatttataaaatttaaaaaaattttttaaattataaaatttaaaatttataatttttataatttCTTGAATAGGGATGTT- i panTro5.chr4 C 0 C 0 s panPan2.chr4 120990550 96 - 195804263 taaa---ttataaattttaaaatttataaaatttaaaaaa-ttttttaaattataaaatttaaaatttataatttttataatttCTTGAATAGGGATGTT- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4421619 97 - 17550833 Taaa---ttataaattttaaaattcataaaatttaaaatttttttaaaaattataaaatttaaaatttatagtttttataattTCCTGAATAGGGATGTT- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69297099 100 - 118206036 taaaatttaaaaaattttaaaatttataaaatttaaaaaatttttaaaaattataaaatttaaaatttataCTTTTTATAATTTCTTGGATATAGATGTA- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111502047 39 - 190429646 CAAT---TTATAAA----------------------------------------------------------TTTTTATAATTTCTTGGATATGGATGTA- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110670156 39 - 189454096 CAAT---TTATAAA----------------------------------------------------------TTTTTATAATTTCTTGGATATGGATGTA- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13237975 39 + 26754465 CAAT---TTATAAA----------------------------------------------------------TTTTTATAATTTCTTGGATATGGATGTA- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4140295 39 - 5137665 CAAT---TTATAAA----------------------------------------------------------TTTTTATAATTTCTTGGATATGGATGTA- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 45900 39 - 60632 CAAT---TTATAAA----------------------------------------------------------TTTTTATAATTTCTTGGATATGGATGTA- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1955539 39 + 2427316 CAAT---TTATAAA----------------------------------------------------------TTTTTATAATTTCTTGGATATGGATGTA- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1242386 39 + 1448899 CAAT---TTATAAA----------------------------------------------------------TTTTTATAATTTCTTGGATATGGATGTA- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52981159 39 - 190850796 TAAT---TTAGAGA----------------------------------------------------------TTTCTATAATTTCTTGGATATGGATGTA- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8143202 39 - 15139346 TAAT---TTAGAAA----------------------------------------------------------TTTCTATAATTTCTTGGATATGGATGTA- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6932307 39 - 7304997 TAAT---TTAGAAA----------------------------------------------------------TTTCTATAATTTCTTGGATATGGTTGTA- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9343685 39 - 11631747 TAAT---TTAGAAA----------------------------------------------------------TTTCTATAATTTCTTGGATATGGATGTA- i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76393816 48 + 151834684 TAAA---CTCAAAA----------------------------------------------TGAAGCAAA---TTTTTGTATTAGCTTGGGTTTGGACGAT- i mm10.chr5 C 0 I 1 s canFam3.chr13 47947094 39 + 63241923 GAAT---TTGCAAA----------------------------------------------------------TGTTTATAACTGCTTGGATTTGGATAAT- i canFam3.chr13 I 1 I 1 s dasNov3.JH568349 4054816 40 - 5279953 GAAT---TTGCAAA----------------------------------------------------------TTTTTATAACTTCTTGGCCATGGATGATA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1833855 104 + 4188776 I e micMur3.chrUn_NW_017968520v1 1754474 43 + 3286835 I e otoGar3.GL873602 8584379 3556 + 8790067 I a score=786891.000000 s hg38.chr4_KI270787v1_alt 12057 52 + 111943 TTAATATCAATACTTTATTAACAAAATTATATGAAGCCTTGGCTGAATTTTA s panTro5.chr4 119574368 52 - 194502333 TTAATATCAATACTTTATTAACAAAATTATATGAAGCCTTGGGTGAATTTTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120990646 52 - 195804263 TTAATATCAATACTTTATTAACAAAATTATATGAAGCCTTGGGTGAATTTTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4421716 52 - 17550833 TTAATATCAATACTTTATTAACAAAATTATATGAAGCCTTGGCTGAATTTTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69297199 52 - 118206036 TTAACATCAATACTTTATTAACAAAATTATGTGAAGCCTTGGTTGAATTTTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111502086 52 - 190429646 TTAATATCAATACTTTATTAACAAAACCATATGAAGCCTTGGTTGAATTTTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110670195 52 - 189454096 TTAATATCAATACTTTATTAACAAAACCATATGAAGCCTTGGTTGAATTTTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13238014 52 + 26754465 TTAATATCAATACTTTATTAACAAAACCATATGAAGCCTTGGTTGAATTTTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4140334 52 - 5137665 TTAATATCAATACTTTATTAACAAAACCATATGAAGCCTTGGTTGAATTTTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 45939 52 - 60632 TTAATATCAATACTTTATTAACAAAACCATATGAAGCCTTGGTTGAATTTTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1955578 52 + 2427316 TTAATATCAATACTTTATTAACAAAACCATATGAAGCCTTGGTTGAATTTTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1242425 52 + 1448899 TTAGTATCAATACTTTATTAACAAAACCATATGAAGCCCCCGCTGAATTTTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52981198 52 - 190850796 TTAATATTAATACTTTATTAACAAAACCATATGAAGCCTTGGCTGAATTTTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8143241 52 - 15139346 ATAATATCAATACTTTATTAACAAAACCATATGAAGTCTTGGCTGAATTTTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6932346 52 - 7304997 TTAATATCAATACTTTATCAACAAAACCATATGAAGCCTTGGCTGAATTTTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9343724 52 - 11631747 TTAATATCAATACTTTATTAACAAAACCATATGAAGCCTTGGCTGAATTTTA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1754517 51 + 3286835 TTAATATCAATACTTTATTAACAAAACCATATGGAA-CCTGACTGAATTTTA i micMur3.chrUn_NW_017968520v1 I 43 C 0 s proCoq1.NW_012140747v1 1833959 52 + 4188776 TTAATATCAATACTTTATTAATAAAACCATATGGAACCCTGACTGAATTTTA i proCoq1.NW_012140747v1 I 104 M 1915 s mm10.chr5 76393865 52 + 151834684 CCTATATTAACATTTTACTAATAAAACCAAGGACAGCTGCAACTAAAATTTA i mm10.chr5 I 1 C 0 s canFam3.chr13 47947134 52 + 63241923 TTCATGTCAAGACTTTACTAACACAACTATATAGTGCCTTTACTGGATTTTA i canFam3.chr13 I 1 C 0 s dasNov3.JH568349 4054856 51 - 5279953 TTAACATTAGGACTTTATT-ACAAAATCATTTGGAGCCCAGACTGAATTTTG i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8584379 3556 + 8790067 I a score=391007.000000 s hg38.chr4_KI270787v1_alt 12109 27 + 111943 ATGAAAGCTTTCATAAATGAGACAAGG s panTro5.chr4 119574420 27 - 194502333 ATGAAAGCTTTCATAAATGAGACAAGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 120990698 27 - 195804263 ATGAAAGCTTTCATAAATGAGACAAGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4421768 27 - 17550833 ATGAAAGCTTTCATAAATGAGACAAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69297251 27 - 118206036 ATGAAATCTTTCATAAATGAGACAAGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111502138 27 - 190429646 ATGAAATCTTTCATAAATGAAACAAGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110670247 27 - 189454096 ATGAAATCTTTCATAAATGAAACAAGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13238066 27 + 26754465 ATGAAATCTTTCATAAATGAAACAAGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4140386 27 - 5137665 ATGAAATCTTTCATAAATGAAACAAGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 45991 27 - 60632 ATGAAATCTTTCATAAATGAAACAAGG i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1955630 27 + 2427316 ATGAAATCTTTCATAAATGAAACAAGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1242477 27 + 1448899 ATGAAATCTTTCATAAATGAAACAAGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52981250 27 - 190850796 ATGAAATCTTTCATAAATAAGACAAGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8143293 27 - 15139346 ATGAAATCTTTCATAAATAAGACAAGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6932398 27 - 7304997 ATGAAGTCTTTCGTAAATAAGACAAGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9343776 27 - 11631747 ATGAAATCCTTCATAAATAAGACAAGG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1754568 27 + 3286835 TTGAAATCTTTCATAAATGAGACAAGG i micMur3.chrUn_NW_017968520v1 C 0 I 23 s mm10.chr5 76393917 26 + 151834684 ATGAACCCTTTCAT-TATGAGACAGGA i mm10.chr5 C 0 C 0 s canFam3.chr13 47947186 27 + 63241923 ATGAAATATTTCATAAATGAGACAAAG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4054907 27 - 5279953 ATGAAATATTTAATAAATGAGACATAG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e otoGar3.GL873602 8584379 3556 + 8790067 I a score=266793.000000 s hg38.chr4_KI270787v1_alt 12136 22 + 111943 TGGGAGCATCAGGAAATGAAAT--- s panTro5.chr4 119574447 22 - 194502333 TGAGAGCATCAGGAAATGAAAT--- i panTro5.chr4 C 0 C 0 s panPan2.chr4 120990725 22 - 195804263 TGGGAGCATCAGGAAATGAAAT--- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4421795 22 - 17550833 TGGGAGCATCAGGAAATGAAAT--- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69297278 22 - 118206036 TGGGAGCACCAGGAAATGAAAT--- i nomLeu3.chr9 C 0 I 2 s rheMac8.chr5 111502165 22 - 190429646 TGGGAGCATCAGGAAATGAAAT--- i rheMac8.chr5 C 0 I 2 s macFas5.chr5 110670274 22 - 189454096 TGGGAGCATCAGGAAATGAAAT--- i macFas5.chr5 C 0 I 2 s macNem1.NW_012012466v1 13238093 22 + 26754465 TGGGAGCATCAGGAAATGAAAT--- i macNem1.NW_012012466v1 C 0 I 2 s cerAty1.NW_012001307v1 4140413 22 - 5137665 TGGGAGCATCAGGAAATGAAAT--- i cerAty1.NW_012001307v1 C 0 I 2 s chlSab2.chr7_KE147969v1_random 46018 22 - 60632 TGGGAGGATCAGGAAATGAAAT--- i chlSab2.chr7_KE147969v1_random C 0 I 2 s manLeu1.NW_012104388v1 1955657 22 + 2427316 TGGGAGCATCAGGAAATGAAAT--- i manLeu1.NW_012104388v1 C 0 I 2 s colAng1.NW_012119221v1 1242504 22 + 1448899 TGGGAGCATCAGGAAATGAAAT--- i colAng1.NW_012119221v1 C 0 I 2 s calJac3.chr3 52981277 22 - 190850796 CAGGAGCACCAGGAAATAAAAT--- i calJac3.chr3 C 0 I 2 s saiBol1.JH378162 8143320 22 - 15139346 TGGGAGCATCAGGAAATAAAAT--- i saiBol1.JH378162 C 0 I 2 s cebCap1.NW_016107439v1 6932425 22 - 7304997 TGGGAGCATCAGGAAATAAAAT--- i cebCap1.NW_016107439v1 C 0 I 2 s aotNan1.NW_018493494v1 9343803 22 - 11631747 TGGGAGCATCAGGAAATAAAAT--- i aotNan1.NW_018493494v1 C 0 I 2 s mm10.chr5 76393943 22 + 151834684 AAGGGCCCTAAGCAAGCAAAAG--- i mm10.chr5 C 0 I 2 s canFam3.chr13 47947213 22 + 63241923 TAGGAGCATCAGGAAACAGATT--- i canFam3.chr13 C 0 I 1 s dasNov3.JH568349 4054934 25 - 5279953 AGGGAACATCAGGAAACAGAAATCC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754595 23 + 3286835 I e otoGar3.GL873602 8584379 3556 + 8790067 I a score=3657268.000000 s hg38.chr4_KI270787v1_alt 12158 288 + 111943 AATTAAGTGTGTTGAGGGAATCAGATTAGTTTTATC-CTCCTATTTTAAAAGACTTAGCTTAATAATTTTAATAAG-TATA--CTATTGTGCTTTTATGCAATGTATT------------------TTTACTGTT------------------------------------------------------------------------------------------------GGCGTTTTAAATTTAGAaggcagcattgtgaaaaggaaaaagcgttaggttagaagatctgggtttgagttttagctcccaaattactatcgtgt-gtttgattgtgggaggctcacataatctac-tttaatcttGTAGGAATATTATTACAGATTCTACCTGatccagccat------cca---- s panTro5.chr4 119574469 289 - 194502333 AATTAAGTGTGTTGAGGGAATCAGATTAGTTTTATC-CTCCTATTTTAAAAGACTTAGCTTAATAATTTTAATAAG-TATA--CTACTGTGCTTTTATGCAATGTATT------------------TTTACTGTT------------------------------------------------------------------------------------------------GGCATTTTAAATTTAGAaggcaccattgtgaaaaggaaaaagcattaggttagaagatctgggtttgagttttagctcccaaattactatcgtgt-gtttgattgtgggaggctcacataatctacttttaatctTGTAGGAATATTATTACAGATTCTACCTGatccagccat------cca---- i panTro5.chr4 C 0 C 0 s panPan2.chr4 120990747 289 - 195804263 AATTAAGTGTGTTGAGGGAATCAGATTAGTTTTATC-CTCCTATTTTAAAAGACTTAGCTTAATAATTTTAATAAG-TATA--CTACTGTGCTTTTATGCAATGTATT------------------TTTACTGTT------------------------------------------------------------------------------------------------GGCATTTTAAATTTAGAaggcaccattgtgaaaaggaaaaagcattaggttagaagatctgggtttgagttttagctcccaaattactattgtgt-gtttgattgtgggaggctcacataatctacttttaatctTGTAGGAATATTATTACAGATTCTACCTGatccagccat------cca---- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4421817 289 - 17550833 AATTAAGTGTGTTGAGGGAATCAGATTAGTTTTATC-CTCCTATTTTAAAAGACTTACCTTAATAATTTTAATAAG-TATA--CTACTGTGCTTTTATGCAATGTATT------------------TTCACTGTT------------------------------------------------------------------------------------------------GGCATTTTAAATTTAGAaggcaccattgtgaaaaggaaaaagcattaggttagaagatctgggtttgagttttagctcccaaattactatcgtgt-gtttgatcgtgggaggctcacataatctacttttaatctTGTAGGAATATTATTACAGATTCTACCTGatccagccat------cca---- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69297302 288 - 118206036 AATTAAGTGTGTTGAGGGAA-CAGATTAGTTTTATC-CTCCTATTTTAAAAGACTTAGCTTAATAATTTAAATAAG-TATA--CTACTGTGCTTTTATGCAATGTATT------------------TTTACTGTT------------------------------------------------------------------------------------------------GGCATTTTAAATTCAGAaggcaccattgtgaaaaggaaaaagcattaggttagatgatctgggtttgagttttagctcccaaattactatggtgt-gtttgatcgtgggaagctcacataatctacttttaatctTGTAGGAATATTATTACCGATTCTACCTGATCCAGCCAT------GCA---- i nomLeu3.chr9 I 2 C 0 s rheMac8.chr5 111502189 289 - 190429646 AATTAAGTGTATTGAAGGAATCAGATTAGTTTTATC-CTCCTATTTTAAAAGACTTAGCTTAATAATTTAAATAAG-TATA--TTACTGTGCTTTTACGCAACGTATT------------------TTTACTGTT------------------------------------------------------------------------------------------------GGCATTTTAAATTTATAaggcaacattgtgaaaaggaaaaagcattaggttagaagatctgggtttgagttttagcccccaagttactatggtgt-gtttgatcatgggaagctcacataatctacttttaatcttgtaggaatattattacctatcctatctGATCCAGCCAT------CTA---- i rheMac8.chr5 I 2 C 0 s macFas5.chr5 110670298 289 - 189454096 AATTAAGTGTATTGAAGGAATCAGATTAGTTTTATC-CTCCTATTTTAAAAGACTTAGCTTAATAATTTAAATAAG-TATA--TTACTGTGCTTTTACGCAACGTATT------------------TTTACTGTT------------------------------------------------------------------------------------------------GGCATTTTAAATTTAGAaggcaacattgtgaaaaggaaaaagcattaggttagaagatctgggtttgagttttagcccccaagttactatggtgt-gtttgatcatgggaagctcacataatctacttttaatctTGTAGGAATATTATTACCTATCCTATCTGATCCAGCCAT------CTA---- i macFas5.chr5 I 2 C 0 s macNem1.NW_012012466v1 13238117 289 + 26754465 AATTAAGTGTATTGAAGGAATCAGATTAGTTTTATC-CTCCTATTTTAAAAGACTTAGCTTAATAATTTAAATAAG-TATA--TTACTGTGCTTTTACGCAACGTATT------------------TTTACTGTT------------------------------------------------------------------------------------------------GGCATTTTAAATTTAGAaggcaacattgtgaaaaggaaaaagcattaggttagaagatctgggtttgagttttagcccccaagttactatggtgt-gtttgatcatgggaacctcacataatctacttttaatcttgtaggaatattattacctatcctatctGATCCAGCCAT------CTA---- i macNem1.NW_012012466v1 I 2 C 0 s cerAty1.NW_012001307v1 4140437 289 - 5137665 AATTAAGTGTGTTGAAGGAATCAGATTAGTTTTATC-CTCCTATTTTAAAAGACTTAGCTTAATAATTTAAATAAG-TATA--TTACTGTGCTTTTACGCAACGTATT------------------TTTACTGTT------------------------------------------------------------------------------------------------GGCATTTTAAATTTAGAAggcaacattgtgaaaaggaaaaagcattaggttagaagatctgggtttgagttttagcccccaagttactatggtgt-gtttgatcgtgggaagctcacataatctacttttaatctTGTAGGAATATTATTACCTATCCTATCTGATCCAGCCAT------CTA---- i cerAty1.NW_012001307v1 I 2 C 0 s chlSab2.chr7_KE147969v1_random 46042 289 - 60632 AATTAAGTGTGTTGAAGGAATCAGATTAGTTTTATC-CTCCTATTTTAAAAGACTTAGCTTAATAATTTACATAAG-TATA--TTACTGTGCTTTTACGCAATGTATT------------------TTTACTGTT------------------------------------------------------------------------------------------------GGCATTTTAAATTTAGAaggcaacattgtgaaaaggaaaaagcgttaggttacaagatctgggtttgagttttagcccccaagttactatggtgt-gtttgatcgtgggaagctcacataatctacttttaatctTGTAGGAATATTATTACCTATTCTATCTGATCCAGCCAT------CTA---- i chlSab2.chr7_KE147969v1_random I 2 C 0 s manLeu1.NW_012104388v1 1955681 289 + 2427316 AATTAAGTGTGTTGAAGGAATCAGATTAGTTTTATC-CTCCTATTTTAAAAGACTTAGCTTAATAATTTAAATAAG-TATA--TTACTGTGCTTTTACGCAACGTATT------------------TTTACTGTT------------------------------------------------------------------------------------------------GGCATTTTAAATTTAGAaggcaacattgtgaaaaggaaaaagcattaggttagaagatctgggtttgagttttagcccccaagttactatggtgt-gtttgatcgtgggaagctcacataatctacttttaatcttgtaggaatattattacctatcctatctGATCCAGCCAT------CTA---- i manLeu1.NW_012104388v1 I 2 C 0 s colAng1.NW_012119221v1 1242528 289 + 1448899 AATTAAGTGTGTTGAAGGAATCAGATTAGTTTTATC-CTCCTGTTTTAAAAGACTTAGCTTAATAATTTAAATAAG-TATA--TTACTGTGCTTTTACGCAATGTATC------------------TTTACTGTT------------------------------------------------------------------------------------------------GGCATTTTAAATTTAGAaggcaacattgtgaaaaggaaaaagcattaggttagaagatctgggtttgagttttagcccccaagttactatggtgt-gtttgatcatgggaagctcacataatctacttttaatcttgtaggaatattattacctattctacctGATCCAGCCAT------CTA---- i colAng1.NW_012119221v1 I 2 C 0 s calJac3.chr3 52981301 288 - 190850796 AATTAAGTGTGTTGAAGGAATCAGATTAGTTTTATC-TTCCTATTTTAAAAGACTTAGCTTAATAATTTAAATAGG-TATA--TTACTGTGCTTTCATGCAATGTATT------------------TTTACTGTT------------------------------------------------------------------------------------------------GGTGTTTTAAATTTAGAAAGCAACACTGTCAAAAAgaaaaagcattaggttagaagatctgggtttaagttttagccaccaaattgctatggttt-gtttgattgtgggaagtttacataatc-acttttaatctTTTAGGAATATTAATATGTATTCTACCTGATTCAGCCAT------CTT---- i calJac3.chr3 I 2 C 0 s saiBol1.JH378162 8143344 288 - 15139346 AATTCAGTATGTTGAAGGAATCAGATTAGTTTTATC-TTCCTATTTTAAAAGATTTAACTTAATAATTTAAATAGG-TATA--TTGCTGTGCTTTTATGCAATGTATT------------------TTTACTGTT------------------------------------------------------------------------------------------------GGTGTTTTAAATTTAGAaggcaacactgtcaaaaagaaaaagcattaggttagaagatctgggtttaagttttagcccccaaattgctatggttt-gtttgttcatggaaagtttacataatc-acttttaatctTGTAGGAATATTAATATGTATTCTACCTCATTCAGCCAT------CTA---- i saiBol1.JH378162 I 2 C 0 s cebCap1.NW_016107439v1 6932449 288 - 7304997 AATTAAGTGTGTTGAAGGAATCAGATTAGTTTTATC-TTCCTATTTTAAAAGACTTAGCTTAATAATTTAAATAGG-TATA--TTACTGTGCTTTTATGCAATGTATT------------------TTTACTGTT------------------------------------------------------------------------------------------------GGTGTTTTCAACTTAGAAGGCAACACTATCAAAAAGAAAAAGCATTAGGTTAGAAGATCTGGGTTTAAGTTTTAGCCCCCAAATTGCTATGGTTT-GTTTGATCGTGGGAAGTTTACATAATC-ACTTTTAATCTTGTAGGAATATTAATATGTACTCTACCTGATTCAGCCAT------CTA---- i cebCap1.NW_016107439v1 I 2 C 0 s aotNan1.NW_018493494v1 9343827 288 - 11631747 ATTTAAGTGTGTTGAAGGAATCAGATTAGTTTTATC-CTCCTATTTTAAAAGACTTAGCTTAATAATTTAAATAGG-TATA--TTACTGTGCTTTTATGCAATGTATT------------------TTTACTGTT------------------------------------------------------------------------------------------------GGTGTTTTAAATTTAGACggcaacactgtcaaaaagaaaaagcattaggttagaagatctgggtttaagttttagcccccaaattgctatggttt-gtttgattgtgggaagtttacataatc-acttttaatctTGTAGGAATATTAATATGCATTCTACCTGATTCAGCCAT------CTA---- i aotNan1.NW_018493494v1 I 2 C 0 s micMur3.chrUn_NW_017968520v1 1754618 281 + 3286835 AATTAAGTGTGTCGAAGGAATCCGATTAGTTTTATC-TGCCTATTTTAAAAGCCTCAGCTTAATAATTTAAATAAA-TATA--TCACTGTACTGTTACGTAATG--TT------------------TTTAACATT------------------------------------------------------------------------------------------------GACATTATAAGTTTAGAaggcaatactgcataaaggaaaaaacattaggttagaagatctgggtttgggttttagcccccaaattactgtg-----gcttgatcttgggaagctcacataatc-acttttaacctTGTAGGAATATTATTACCAATCTT-CCTGATccagccat------cca---- i micMur3.chrUn_NW_017968520v1 I 23 I 1581 s mm10.chr5 76393967 401 + 151834684 AATTAAATGTACTGAAGGAA-GAGATT--CTTTGTCTCTCCCAATTAAAAAGACCCAGCTTAATAACCTGAACAAACTGTA--TTACTGACCTGTTATGCAATGTTTTAAAATTTGCCATTTTAGCTTTATTATTATTTTACTTACATATTATAttttgcagtagatattgaactgagcatcttgcatgctctaggtgatggctctgccagtgagctatgtccccagatccAGCGTCTTGAATTTAGGTAGCA-TATTGCAGGCAGGAACCAGTGCTGAGTTGGAAGATCTGGGTTTGAGTCTTAGCTTGCGAGATGCTGTGAGATCATCTCATGATGTTTACACCGCACTGTC-ACATTTAATTGAGTAGAACTCTAGATAACCAGCCAGGCCGAGTCAGCCAT------CCC---- i mm10.chr5 I 2 I 19 s canFam3.chr13 47947236 279 + 63241923 AATTAAATATGTTGAAAGAATCAGATTAG-TTTATC-CACCTATTTAAAAAGACTC-----AATAATTGGAATAAG-TGTGTTTTATTGTTCTTTTATACAC--TATT------------------TTTAATGTT------------------------------------------------------------------------------------------------GGCATTTTAAATTTGGAAGGCCACACTGGgtggggga---agcattaagctaaaaaatatggatttgagttgtagccctcaaattactatggtat-----gatcttgggaagctcat-taatc-gcttttaatcttaTATAAATATTATTACCTACT-TACTTCATAGAGCCATAGTCCCCCA---- i canFam3.chr13 I 1 C 0 s dasNov3.JH568349 4054959 272 - 5279953 AATTAACTGTGTTGGAGGAATCAGATGAGTTTTATC-CATCTATTTTAAAAAGATCAACT---TAATTTAAATAAG-TTTA--TTGCCCTCCTTTTATGCATTG--TT------------------TTTAATGTT------------------------------------------------------------------------------------------------GGCATTTTAAATTTAGgaggcaatactgtagagaggaaaaaacattaggttagaagatctgggtttgaattttagtccccaaattacaatgacct----------tgggaagctcacAAGATC-AGTCTTTTTTTTttttaaagatt------tattttatttatttctctccc------ctatccc i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e otoGar3.GL873602 8584379 3556 + 8790067 I a score=427915.000000 s hg38.chr4_KI270787v1_alt 12446 40 + 111943 tccatccaCT------------TATGCAAttatttattcaatatgcatttat s panTro5.chr4 119574758 40 - 194502333 tccatccaCT------------TATTCAAttatttattcaatatacatttat i panTro5.chr4 C 0 C 0 s panPan2.chr4 120991036 40 - 195804263 tccatccaCT------------TATTCAAttatttattcaatatacatttat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4422106 40 - 17550833 tccatccaCT------------TATTCAAttatttattcaatatacatttat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69297590 40 - 118206036 CCCATCCACT------------TATTCAAttatttattcaatatacatttat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111502478 40 - 190429646 CCCCTCTACT------------TATTCAAttatttattcaatatacattcac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110670587 40 - 189454096 CCCCTCTACT------------TATTCAAttatttattcaatatacattcac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13238406 40 + 26754465 CCCCTCTACT------------TATTCAAttatttattcaatatacattcac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4140726 40 - 5137665 CCCCTCCACT------------TATTCAAttatttattcaatatacattcac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 46331 40 - 60632 CCCCTCCACT------------TATTCAAttatttattcaatatacattcac i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1955970 40 + 2427316 CCCCTCCACT------------TATTCAAttatttattcaatatacattcac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1242817 40 + 1448899 CCCATCCACT------------TATTCAAttatttattcaatatacattcat i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52981589 40 - 190850796 CCCATCCACT------------TATTCAAttatttattccatatgcatttat i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8143632 40 - 15139346 CCCATCCACT------------TATTCAACTatttattccatatacatttat i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6932737 33 - 7304997 CCCATCCact------------tattca-------attctgtatacatttat i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9344115 40 - 11631747 CCCATCCACT------------TATTCAAttatttactccatatacatttat i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76394387 52 + 151834684 ACCATCCACTTACCCATAGATCTATTCAACATTTACTTCAATATATATTTAT i mm10.chr5 I 19 C 0 s canFam3.chr13 47947515 43 + 63241923 TATATTCACT---------ATTAATTCAAttattcattcaacatacatttat i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4055231 40 - 5279953 cccattgtct------------gatctctgtgtccattcgctgtgtgttcat i dasNov3.JH568349 C 0 I 1990 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e otoGar3.GL873602 8584379 3556 + 8790067 I a score=1997396.000000 s hg38.chr4_KI270787v1_alt 12486 187 + 111943 tgagcatctactaagtgccgatcactttcacttgagacatcttagagttaaactagattcagattctgccctggaggagacca--gtatagaaagagagacagac---atgaatataaaacaaggcagtgtaaaacatcataggtgacataaagaaaacctgtcctgatcacagtggacagaaagA-AGAGGT s panTro5.chr4 119574798 185 - 194502333 tgagcatctactaagtgccaatcactttcacttgagacatcttagagttaaactagattcagattctgccctggaggagacca--gtatagaa--agagacagac---atgaatataaaacaaggcagtgtaaaacatcataggtgacataaagaaaacctgtcctgatcacagtggacagaaagA-AGAGGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120991076 187 - 195804263 tgagcatctactaagtgccaatcactttcacttgagacatcttagagttaaactagattcagattctgccctggaggagacca--gtatagaaagacagacagac---atgaatataaaacaaggcagtgtaaaacatcataggtgacataaagaaaacctgtcctgatcacagtggacagaaagA-AGAGGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4422146 187 - 17550833 tgagcatctactaagtgccaatcactttcacttgagacatcttagagttaaactagattcagattctgccctggaggagacca--gtatagaaagagagacagac---atgaatataaaacaaggcagtgtaaaacatcataggtgacataaagaaaacctgtcctgatcacagtggacagaaagA-AGAGGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69297630 187 - 118206036 tgagcatctactaagtgccagtcactttcacttgagacatcttagagttaaactagattcagattctgacctggaggagacta--gtatagaaagagagacagac---atgaatataaaacaaggcagtgtaaaacatcataggtgacataaagaaaacctgtcctgatcacagtggacagaaaga-agaggt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111502518 185 - 190429646 tgagcatctactaagtgccagtcactttcacttgagatatcttacagttaaactagattcagactttgccctggaggagacca--gtatagaaagagagacagac---atgaatacaaaacaaggcagtgtaaaacatcgtaggtgacataaagaaagcctgtcctgatcaca--ggacagaaaga-agtggt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110670627 185 - 189454096 tgagcatctactaagtgccagtcactttcacttgagatatcttacagttaaactagattcagactctgccctggaggagacca--gtatagaaagagagacagac---atgaatacaaaacaaggcagtgtaaaacatcgtaggtgacataaagaaagcctgtcctgatcaca--ggacagaaaga-agtggt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13238446 185 + 26754465 tgagcatctactaagtgccagtcactttcacttgagatatcttacagttaaactagattcagactctgccctggaggagacca--gtatagaaagagagacagac---atgaatacaaaacaaggcagtgtaaaacatcgtaggtgacataaagaaagcctgtcctgatcaca--ggacagaaaga-agtggt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4140766 185 - 5137665 tgagcatctactaagtgccagtcactttcacttgagatatcttacagttaaactagattcagactctgccctggaggagacca--gtatagaaagagagacagac---atgaatacaaaacaaggcagtgtaaaacatcgtaggtgacataaagaaagcctgtcctgatcaca--ggacagaaaga-agtggt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 46371 185 - 60632 tgagcatctactaagtgccagtcactttcacttgagatatcttacagttaaactagattcagactctgccctggaggagacca--gtatagaaagagagacagac---atgaatacaaaacaaggcagtgtaaaacatcgtaggtgacataaagaaagcctgtcctgatcaca--ggacagaaaga-agtggt i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1956010 185 + 2427316 tgagcatctactaagtgccagtcactttcacttgagatatcttacagttaaactagattcaggctctgccctggaggagaccg--gtatagaaagagagacagac---atgaatacaaaacaaggcagtgtaaaacatcataggtgacataaagaaagcctgtcctgatcaca--ggacagaaaga-agtggt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1242857 185 + 1448899 tgagcatctactaagtgccagtcactttcacttgagatatcttacagttaaactggattcagactctgccctggaggagacca--gtatagaaagagagacagac---atgaatacaaaacaaggcagtgtaaaacatcataggtgacataaagaaagcctgtcctgatcaca--ggacagaaaga-agtggt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52981629 185 - 190850796 tgagcatctactaagtgccggtcactttcacttgagacatgttagagttaaagtagattcagactctgccctggaggagacca--gtatagaaagagagacagac---ataaatataaaacaaggca--gtaaaatgtggtaggtgacataaagaaaacctgtcctgatcgtggtggacagaaaga-tgaggt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8143672 185 - 15139346 tgagcatctactaagtgccagtcactttcacttgagacatgttagagttaaactagattcagactctgccctggaggagacca--gtataggaagagagacagac---ataaatataaaacaaggca--gtaaaatgtggtaggtgacataaagaaaacctgtcctgatcacagtggacagtaaga-agaggt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6932770 185 - 7304997 tgagcatctactaactgccagtcactttcacttgagacatgttagagttaaactagattcagactctgccctggaggggacca--gaatagaaagagagacagac---gtaaatataaaacaaggca--gtaaaatgtggtaggtgacataaagagaacctgtcctgatcacaggggacagaaaga-agaggt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9344155 185 - 11631747 tgagcatgtactaagtgccagtcactttcacttgagacatgttagagttaaactagattcagactctgccctggaggaaacca--gtataggaagagagacagac---ataaatataaaacaaggca--gtaaaatgtggtaggtgacataaagaaaacctgtcctgatcacagtgaacagaaaga-agaggt i aotNan1.NW_018493494v1 C 0 I 1712 s mm10.chr5 76394439 170 + 151834684 GGAGCATCAGC------CCAGCCA---TGACTTAAAATAGTTCACAGCTAACCTGTA------CTCTGCTCCTGAGGAGCCCA---CAGCGGAGGAGAGACAGCCAAGAGGAATAGAAACCAATGCA--GGAAGAGATGGTGGGCGCTGTGCTGAAATGC--TTCTGATTGCAGCACTCAGAAAGA-AGAGGG i mm10.chr5 C 0 C 0 s canFam3.chr13 47947558 170 + 63241923 tgaacatttactaagtgccagacac-----------------tggaattaaactacactcaacctccccattcataaaatccacagtttagaaagagagattgac---aggagtataaaggaatgta--gtaaaatgtgatgagtcctgtaaagaaaacctat-ctgtccacattgggcagaaaaagagaggt i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e dasNov3.JH568349 4055271 1990 - 5279953 I e otoGar3.GL873602 8584379 3556 + 8790067 I a score=23880.000000 s hg38.chr4_KI270787v1_alt 12673 2 + 111943 CA s panTro5.chr4 119574983 2 - 194502333 CA i panTro5.chr4 C 0 C 0 s panPan2.chr4 120991263 2 - 195804263 CA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4422333 2 - 17550833 CA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69297817 2 - 118206036 ca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111502703 2 - 190429646 ca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110670812 2 - 189454096 ca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13238631 2 + 26754465 ca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4140951 2 - 5137665 ca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 46556 2 - 60632 ca i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1956195 2 + 2427316 ca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1243042 2 + 1448899 ca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52981814 2 - 190850796 ca i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8143857 2 - 15139346 ca i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6932955 2 - 7304997 ca i cebCap1.NW_016107439v1 C 0 C 0 s mm10.chr5 76394609 2 + 151834684 CA i mm10.chr5 C 0 I 938 s canFam3.chr13 47947728 2 + 63241923 ta i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e dasNov3.JH568349 4055271 1990 - 5279953 I e aotNan1.NW_018493494v1 9344340 1712 - 11631747 I e otoGar3.GL873602 8584379 3556 + 8790067 I a score=33840.000000 s hg38.chr4_KI270787v1_alt 12675 3 + 111943 CTT s panTro5.chr4 119574985 3 - 194502333 CTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120991265 3 - 195804263 CTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4422335 3 - 17550833 CTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69297819 3 - 118206036 ctt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111502705 3 - 190429646 ctt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110670814 3 - 189454096 ctt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13238633 3 + 26754465 ctt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4140953 3 - 5137665 ctt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 46558 3 - 60632 ctt i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1956197 3 + 2427316 ctt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1243044 3 + 1448899 ctt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52981816 3 - 190850796 ctt i calJac3.chr3 C 0 I 3 s saiBol1.JH378162 8143859 3 - 15139346 ctt i saiBol1.JH378162 C 0 I 3 s cebCap1.NW_016107439v1 6932957 3 - 7304997 ctt i cebCap1.NW_016107439v1 C 0 I 1685 s canFam3.chr13 47947730 3 + 63241923 ctt i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4055271 1990 - 5279953 I e aotNan1.NW_018493494v1 9344340 1712 - 11631747 I e otoGar3.GL873602 8584379 3556 + 8790067 I a score=20055.000000 s hg38.chr4_KI270787v1_alt 12678 2 + 111943 CT s panTro5.chr4 119574988 2 - 194502333 CT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120991268 2 - 195804263 CT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4422338 2 - 17550833 CT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69297822 2 - 118206036 ct i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111502708 2 - 190429646 ct i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110670817 2 - 189454096 ct i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13238636 2 + 26754465 ct i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4140956 2 - 5137665 ct i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 46561 2 - 60632 ct i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1956200 2 + 2427316 ct i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1243047 2 + 1448899 ct i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52981822 2 - 190850796 ct i calJac3.chr3 I 3 C 0 s saiBol1.JH378162 8143865 2 - 15139346 ct i saiBol1.JH378162 I 3 C 0 s canFam3.chr13 47947733 2 + 63241923 ct i canFam3.chr13 C 0 I 972 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4055271 1990 - 5279953 I e aotNan1.NW_018493494v1 9344340 1712 - 11631747 I e cebCap1.NW_016107439v1 6932960 1685 - 7304997 I e otoGar3.GL873602 8584379 3556 + 8790067 I a score=8281.000000 s hg38.chr4_KI270787v1_alt 12680 1 + 111943 T s panTro5.chr4 119574990 1 - 194502333 T i panTro5.chr4 C 0 C 0 s panPan2.chr4 120991270 1 - 195804263 T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4422340 1 - 17550833 T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69297824 1 - 118206036 t i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111502710 1 - 190429646 t i rheMac8.chr5 C 0 I 1689 s macFas5.chr5 110670819 1 - 189454096 t i macFas5.chr5 C 0 I 1688 s macNem1.NW_012012466v1 13238638 1 + 26754465 t i macNem1.NW_012012466v1 C 0 I 1691 s cerAty1.NW_012001307v1 4140958 1 - 5137665 t i cerAty1.NW_012001307v1 C 0 I 1687 s chlSab2.chr7_KE147969v1_random 46563 1 - 60632 t i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1956202 1 + 2427316 t i manLeu1.NW_012104388v1 C 0 I 1686 s colAng1.NW_012119221v1 1243049 1 + 1448899 t i colAng1.NW_012119221v1 C 0 I 1690 s calJac3.chr3 52981824 1 - 190850796 t i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8143867 1 - 15139346 t i saiBol1.JH378162 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4055271 1990 - 5279953 I e aotNan1.NW_018493494v1 9344340 1712 - 11631747 I e cebCap1.NW_016107439v1 6932960 1685 - 7304997 I e otoGar3.GL873602 8584379 3556 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I a score=10948.000000 s hg38.chr4_KI270787v1_alt 12681 4 + 111943 GGTG s panTro5.chr4 119574991 4 - 194502333 GGTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 120991271 4 - 195804263 GGTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4422341 4 - 17550833 GGTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69297825 4 - 118206036 ggtg i nomLeu3.chr9 C 0 I 1692 s chlSab2.chr7_KE147969v1_random 46564 4 - 60632 ggtg i chlSab2.chr7_KE147969v1_random C 0 I 1694 s calJac3.chr3 52981825 4 - 190850796 ggtg i calJac3.chr3 C 0 I 1611 s saiBol1.JH378162 8143868 4 - 15139346 ggtg i saiBol1.JH378162 C 0 I 1715 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4055271 1990 - 5279953 I e aotNan1.NW_018493494v1 9344340 1712 - 11631747 I e cebCap1.NW_016107439v1 6932960 1685 - 7304997 I e otoGar3.GL873602 8584379 3556 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e colAng1.NW_012119221v1 1243050 1690 + 1448899 I e manLeu1.NW_012104388v1 1956203 1686 + 2427316 I e cerAty1.NW_012001307v1 4140959 1687 - 5137665 I e macNem1.NW_012012466v1 13238639 1691 + 26754465 I e rheMac8.chr5 111502711 1689 - 190429646 I e macFas5.chr5 110670820 1688 - 189454096 I a score=546.000000 s hg38.chr4_KI270787v1_alt 12685 1 + 111943 A s panTro5.chr4 119574995 1 - 194502333 A i panTro5.chr4 C 0 C 0 s panPan2.chr4 120991275 1 - 195804263 A i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4422345 1 - 17550833 A i gorGor5.CYUI01014963v1 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4055271 1990 - 5279953 I e aotNan1.NW_018493494v1 9344340 1712 - 11631747 I e cebCap1.NW_016107439v1 6932960 1685 - 7304997 I e saiBol1.JH378162 8143872 1715 - 15139346 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8584379 3556 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e nomLeu3.chr9 69297829 1692 - 118206036 I e colAng1.NW_012119221v1 1243050 1690 + 1448899 I e manLeu1.NW_012104388v1 1956203 1686 + 2427316 I e chlSab2.chr7_KE147969v1_random 46568 1694 - 60632 I e cerAty1.NW_012001307v1 4140959 1687 - 5137665 I e macNem1.NW_012012466v1 13238639 1691 + 26754465 I e rheMac8.chr5 111502711 1689 - 190429646 I e macFas5.chr5 110670820 1688 - 189454096 I a score=9176.000000 s hg38.chr4_KI270787v1_alt 12686 3 + 111943 cta s panTro5.chr4 119574996 3 - 194502333 cta i panTro5.chr4 C 0 C 0 s panPan2.chr4 120991276 3 - 195804263 cta i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4422346 3 - 17550833 cta i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69299521 3 - 118206036 cta i nomLeu3.chr9 I 1692 C 0 s macFas5.chr5 110672508 3 - 189454096 ctg i macFas5.chr5 I 1688 C 0 s saiBol1.JH378162 8145587 3 - 15139346 cta i saiBol1.JH378162 I 1715 C 0 s cebCap1.NW_016107439v1 6934645 3 - 7304997 cta i cebCap1.NW_016107439v1 I 1685 C 0 s aotNan1.NW_018493494v1 9346052 3 - 11631747 cta i aotNan1.NW_018493494v1 I 1712 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4055271 1990 - 5279953 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8584379 3556 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e colAng1.NW_012119221v1 1243050 1690 + 1448899 I e manLeu1.NW_012104388v1 1956203 1686 + 2427316 I e chlSab2.chr7_KE147969v1_random 46568 1694 - 60632 I e cerAty1.NW_012001307v1 4140959 1687 - 5137665 I e macNem1.NW_012012466v1 13238639 1691 + 26754465 I e rheMac8.chr5 111502711 1689 - 190429646 I a score=915959.000000 s hg38.chr4_KI270787v1_alt 12689 101 + 111943 tgttgcccaggctggtctcaaactcttggcctcagagatcctcctgctttaacctcccaaagtgccaggattacagatgtaacccactgcaccttgccAAG s panTro5.chr4 119574999 101 - 194502333 tgttgcccaggctggtctcaaactcttggcctcagagatcctcctgctttaacctcccaaagtgccaggattacagatgtaacccactgcaccttgccAAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 120991279 101 - 195804263 tgttgcccaggctggtctcaaactcttggcctcagagatcctcctgctttaacctcccaaagtgccaggattacagatgtaacccactgcaccttgccAAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4422349 101 - 17550833 tgttgcccaggctggtctcaaactcttggcctcagagatcctcctgctttaacctcccaaagtgccaagattacagatgtaacccactgcaccttgccAAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69299524 101 - 118206036 tgttacccaggctggtctcaaactcttggcctcagagatcctcctgccttaacctcccaaagtgccaggattacagatgtaacccactgcaccttgccAAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111504400 101 - 190429646 tgttgcccaggctggtctcaaactcttggcctcagagaacctcctgccttaacttcccaaagtgccaggattacagatgtaacccactgcaccttgccAAG i rheMac8.chr5 I 1689 C 0 s macFas5.chr5 110672511 101 - 189454096 tgttgcccaggctggtctcaaactcttggcctcagagaacctcctgccttaacttcccaaagtgtcaggattacagatgtaacccactgcaccttgccAAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13240330 101 + 26754465 tgttgcccaggctggtctcaaactcttggcctcagagaacctcctgccttaacttcccaaagtgccaggattacagatgtaacccactgcaccttgccAAG i macNem1.NW_012012466v1 I 1691 C 0 s cerAty1.NW_012001307v1 4142646 101 - 5137665 tgttgcccaggctggtctcaaactcttggcctcagagatcctcctgccttaacttcccaaagtgccaggattacagatgtaacccactgcaccttgccAAG i cerAty1.NW_012001307v1 I 1687 C 0 s chlSab2.chr7_KE147969v1_random 48262 101 - 60632 tgttgcccaggctggtctcaaactcttggcctcagagatcctcctgccttaacttcccaaagtgccaggattacagatgtaacccactgcaccttgccAAG i chlSab2.chr7_KE147969v1_random I 1694 C 0 s manLeu1.NW_012104388v1 1957889 101 + 2427316 tgttgcccaggctggtctcaaactcttggcctcagagatcctcctgccttaacttcccaaagtgccaggattacagatgtaacccactgcaccttgccAAG i manLeu1.NW_012104388v1 I 1686 C 0 s colAng1.NW_012119221v1 1244740 101 + 1448899 tgttgcccaggctggtctcaaactcttggcctcagagatcctcctgccttaacttcccaaagtgccaggattacagatgtaacccactgcaccttgccAAG i colAng1.NW_012119221v1 I 1690 C 0 s saiBol1.JH378162 8145590 101 - 15139346 tgttgctcaggctggtatcagactcttggtctcaaatatgctcctgcctcaacttcccaaagtgctaggattacagatgtaactcactgaaccttgccAAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6934648 99 - 7304997 tgtttcccaggctggtatcagactcttggtctcaaagatcctcctgcctcaacctccc--agtgctaggattacagatgtaacccactgAATCTTGCCAAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9346055 100 - 11631747 tgtttcccaggctggtatcagactcttggtctcaaagatcctcctgcctcaacctcccaaagtgctaggattacagatgtaacccactgAACTTTGCC-AG i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4055271 1990 - 5279953 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8584379 3556 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I a score=291722.000000 s hg38.chr4_KI270787v1_alt 12790 38 + 111943 AGTTAGTTTTTAAATCATTGACAGTATGAAGGGTTTCT----- s panTro5.chr4 119575100 38 - 194502333 AGTTAGTTTTTAAATCATTGACAGTATGAAGGGTTTCT----- i panTro5.chr4 C 0 C 0 s panPan2.chr4 120991380 38 - 195804263 AGTTAGTTTTTAAATCATTGACAGTATGAAGGGTTTCT----- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4422450 38 - 17550833 AGTTAGTTTTTAAATCATTGACAGTATGAAGGGTTTCT----- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69299625 33 - 118206036 AGTTAGTTTTTAAATCATTGACAGTATGAAGGG---------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111504501 33 - 190429646 AGTTAGTTTTTAAATCATTGACAGTGTGAAGGG---------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110672612 33 - 189454096 AGTTAGTTTTTAAATCATTGACAGTGTGAAGGG---------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13240431 33 + 26754465 AGTTAGTTTTTAAATCATTGACAGTGTGAAGGG---------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4142747 33 - 5137665 AGTTAGTTTTTAAATCATTGACAGTGTGAAGGG---------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 48363 33 - 60632 AGTTAGTTTTTAAATCATTGACAGTGTGAAGGG---------- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1957990 33 + 2427316 AGTTAGTTTTTAAATCATTGACAGTGTGAAGGG---------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1244841 33 + 1448899 AGTTAGTTTTTAAATCATTGACAGTGTGAAGGG---------- i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8145691 33 - 15139346 AATTAGTTTCTACATCATTGACAGTGTGAAGGG---------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6934747 33 - 7304997 AGTTAGTTTCTACATCATTGACAGTGTGAAGAG---------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9346155 33 - 11631747 AGTTAGTTTCTACATCATTGATAGTGTGAAGAG---------- i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4057261 38 - 5279953 AGTTAGTTTTAAAATAATTTATATTGAGAGGAG-----CTTAT i dasNov3.JH568349 I 1990 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8584379 3556 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I a score=1074238.000000 s hg38.chr4_KI270787v1_alt 12828 117 + 111943 ----TTTCTT--TTCTTTTCTTTTGGT-GGGGAGATAGTGGCTTACAGT------AAAAAAAAAAAAATTATACACTATATCTCAACTAGAAACTAAATGAAACCAAACTAGTATGCACTTTTGAGACAT s panTro5.chr4 119575138 115 - 194502333 ----TTTCTT--TTCTTTTCTTTTGGT-GGGGAGATAGTGGCTTACAGT--------AAAAAAAAAAATTATACGCTATATCTCAACTAGAAACTAAATGAAACTAAACTAGTATGCACTTTTGAGACAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 120991418 115 - 195804263 ----TTTCTT--TTCTTTTCTTTTGGT-GGGGAGATAGTGGCTTACAGT--------AAAAAAAAAAATTATACGCTATATCTCAACTAGAAACTAAATGAAACTAAACTAGTATGCACTTTTGAGACAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4422488 115 - 17550833 ----TTTCTT--TTCTTTTCTTTTGGT-GGGGAGATAGTGGCTTACAGT--------AAAAAAAAAAATTATACACTATATCTCAACTAGAAACTAAATGAAACTAAACTAGTATGCACTTTTGAGACAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69299658 116 - 118206036 ----TTTCTT--TTCTTTCCTTTTGGT-GGGGAGATAGTGGCTTACAGT-------AAAAAAAAAAAATTATACACTATATCTCAACTAGAAACTAAATGAAACTAAACTAGTATGCACTTTTGAGACAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111504534 122 - 190429646 ----TTTCTT--TTCTTTTCTTTTGGT-GGGGAGATAGTGGCTTACATTaaaaaaaaaaaacaaaaaaTTATACACTATATCTCCATTAGAAACTAAATGAAACTAAACTAGT-TATACTTTTGAGACAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110672645 122 - 189454096 ----TTTCTT--TTCTTTTCTTTTGGT-GGGGAGATAGTGGCTTACAGTAACAAAAAAAAACAAAAAATTATACACTATATCTCCATTAGAAACTAAATGAAACTAAACTAGT-TATACTTTTGAGACAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13240464 122 + 26754465 ----TTTCTT--TTCTTTTCTTTTGGT-GGGGAGATAGTGGCTTACAGTaaaaaaaaaaaacaaaaaaTTATACACTATATCTCCATTAGAAACTAAATGAAACTAAACTAGT-TATACTTTTGAGACAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4142780 122 - 5137665 ----TTTCTT--TTCTTTTCTTTTGTT-GGGGAGATAGTGGCTTACAGTaaaaaaaaaaaacaaaaaaTTATACACTATATCTCCATTAGAAACTAAATGAAACTAAACTAGT-TATACTTTTGAGACAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 48396 122 - 60632 ----TTTCTT--TTCTTTTCTTTTGGT-GGGGAGATAGTGGCTTACAGTAAAAAAACAAAACAAAAAATTATACACTATATCTCCATTAGAAACTAAATGAAACTAAACTAGT-TATACTTTTGAGATAT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1958023 121 + 2427316 ----TTTATT--TTCTTTTCTTTTCGT-GGGGAGATAGTGGCTTACAGTAAAAAAA-AAAACAAAAAATTATACACTATATCTCCATTAGAAACTAAATGAAACTAAACTAGT-TATACTTTTGAGACAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1244874 121 + 1448899 ----TTTCTT--TTCTTTTCTTTTGGT-GGGGAGATAGTGGCTTACAGTaaaaaaaaaaa--aaaaaaTTATACACTATATCTCCATTAGAAACCAAATGAAACTAAACTAGTATACACTTTTGAGACAT i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8145724 115 - 15139346 ----TTTCTT--TTCTTTTCTTTTGGT-GGGGAGATAGTGGCTTACAGT--------CAAAAAAATTATTATACACTATATTTCTACTAGAAACTAAGTGAAACTAAACTACTATGCATTTTTGAGACAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6934780 110 - 7304997 ---------T--TTCTTTTCTTTTGGT-GAGGAGATAGCGGCTTACATT--------CAAAAAAATTATTATACACTATATCTCTACTAGAAACTAAGTGAAACTAAACTAGTATGCACTTTTGAGACAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9346188 110 - 11631747 ---------T--TTCTTTTCTTTTGGT-GGGGAGATAGTGGCTTACATT--------CAAAAAAATTATTATACACTATATCTCTACTAGAAACTAAGTGAAACTAAACTAGTATGCACTTTTGAGACAT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8587935 107 + 8790067 ----TTTCTT--TTTTTTTTTTTTAAT----GAGATAGTGGTTTTCATT-----------AAAAAAAATTACACACTATACCTT--CTAGATACTAAATTAAACTAAACCAGTATATATTTTTGGAACAT i otoGar3.GL873602 I 3556 C 0 s dasNov3.JH568349 4057299 122 - 5279953 TTCCTTTCTTTATTTTCTTTTTTTAGTGGGGGAGAAAGTGGTTTGTATT--------CAAAGAAATTATTATACACGTTATTTTCACTAGATACTAAATTAAACTACATCAGTATGCACTTCCCGAACAT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e calJac3.chr3 52981829 1611 - 190850796 I e canFam3.chr13 47947735 972 + 63241923 I a score=1682592.000000 s hg38.chr4_KI270787v1_alt 12945 182 + 111943 TAAGATGA-AATCAAAAACTAACACCAATCatact--------tccaaa------------------------ctcattt------------------atcatatcaaagccagagaaggacactataagaaaataaaaattacaggccaatatccctgataaacatagatgaaaaagtcctcaacaaaatactagcaagccaaattcaacagcacatc-aaaggataattcat s panTro5.chr4 119575253 182 - 194502333 TAAGATGA-AATCAAAAACTAACACCAATCatact--------tccaaa------------------------ctcattt------------------atcatatcaaagccagagaaggacactataagaaaataaaaattacaggccaatatccctgataaacatagatgaaaaagtcctcaacaaaatactagcaagccaaattcaacagcacatc-aaaggataattcat i panTro5.chr4 C 0 C 0 s panPan2.chr4 120991533 181 - 195804263 TAAGATGA-AATCAAAAACTAACACCAATCatact--------tccaaa------------------------ctcattt------------------atcatatcaaagccagagaaggacactataagaaaataaaaattacaggccaatatccctgataaacata-atgaaaaagtcctcaacaaaatactagcaagccaaattcaacagcacatc-aaaggataattcat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4422603 181 - 17550833 TAAGATGA-AATCAAAAACTAATACCAATCATACT--------TCCAAA------------------------CTGATTT------------------ATCatatcaaagccagagaaggacactataagaaaat-aaaattacaggccaatatccctgataaacatagatgaaaaagtcctcaacaaaatactagcaagccaaattcaacagcacatc-aaaggataattcat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69299774 182 - 118206036 TAAGATGA-AATAAAAAACTAATACCAATGatact--------tccaaa------------------------cttattt------------------atcatatcaaagccagagaaggacactataagaaaagaaaaattacaggccaatatccctgataaacatagatgcaaaagtcctcaacaaaatactagcaagccaaattcaacagcgcatc-aaaggatgattcat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111504656 194 - 190429646 TAGGATGA-AATCAAAAACTAATACCAATCatact--------tccaaa------------------------ctcattttatgaggccaaaattatcttcatatcaaagccagagaaggacactataag------aaaattacaggccaatatccctgataaacatagatgcaaaagtcctcaacaaaatattagcaagcccaattcaacagcacacc-aaaggataattcat i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110672767 194 - 189454096 TAGGATGA-AATCAAAAACTAATACCAATCatact--------tccaaa------------------------ctcattttatgaggccaaaattatcttcatatcaaagccagagaaggacactataag------aaaattacaggccaatatccctgataaacatagatgcaaaagtcctcaacaaaatattagcaagcctaattcaacagcacatc-aaaggataattcat i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13240586 194 + 26754465 TAGGATGA-AATCAAAAACTAATACCAATCatact--------tccaaa------------------------ctcattttatgaggccaaaattatcttcatatcaaagccagagaaggacactataag------aaaattacaggccaatatccctgataaacatagatgcaaaagtcctcaacaaaatattagcaagcccaattcaacagcacatc-aaaggataattcat i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4142902 194 - 5137665 TAGGATGA-AATCAAAAACTAATACCAATCatact--------tccaaa------------------------ctcattttatgaggccaaaattatcttcatatcaaagccagagaaggacactataag------aaaattacaggccaatatccctgataaacatagatgcaaaagtcctcaacaaaatattagcaagcccaattcaacagcacatc-aaaggataattcat i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 48518 194 - 60632 TAGGATGA-AATCAAAAACTAATGCCAATCatact--------tccaaa------------------------ctcattttatgaggccaaaattatcttcatatcaaagccagagaaggacactatatg------aaaattacaggccaatatccctgataaacatagatgcaaaagtcctcaacaacatattagcaagccaaattcaacagcacatc-aaaggataattcat i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1958144 194 + 2427316 TAGGATGA-AATCAAAAACTAATACCAATCatact--------tccaaa------------------------ctcattttatgaggccaaaattatcttcatatcaaagccagagaaggacactataag------aaaattacaggccaatatccctgataaacatagatgcaaaagtcctcaacaaaatattagcaagcccaattcaacagcacatc-aaaggataattcat i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1244995 194 + 1448899 TAGGATGA-AATCAAAAACTAATACCAATCGtact--------tccaaa------------------------ctcattttatgaggccaagattatcttcatatcaaagccagagaatgacactataag------aaaattacaggccaatgtccctgataaacacagatgcaaaagtcatcaacaaaatattagcaagccaaattcaacagcacatc-aaaggataattcat i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8145839 200 - 15139346 TAAGATGAGAATCAAGAACTAATACCAATCatact--------tccaaa------------------------ctcattttatcaggccaacattaccttcataccaaagccagagaaggacactataagaaaag-aaaattacaggccaatatcctttataaacacagatgcagaagtcctcaacaaaatactagcaagccaaattcaacagcacatc-acaagataatttat i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6934890 200 - 7304997 TAAGATGAGAATCAAGAACTAATACCAAACatact--------tccaaa------------------------ctcattttatgaggccaacattaccttcataccaaagccagagcaggacactataagaaaag-aaaattacaggccaatatccttgataaacacagatgcaaaagtcctcaaaaaaatactagcaagccaaattcaacagcatatc-acaggataatttat i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9346298 200 - 11631747 TAAGATGAGAATCAAGAACTAATACCAATCatact--------tccaaa------------------------ctcattttatgaggccaacattaccttcataccaaagccagagaaggacactagaagaaaag-aaaattacaggtcaatatccttgataaacacagatgcaaaagtcctcaacaaaatactagcaagccaaattcaacatcatatc-acaggataatttat i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8588042 230 + 8790067 TAAAAAGGGAATCGagaacaaataccaatccttctcaaactcctccaaaaagttaaagagaagagaatattctctcattttacaaggcca--attacccagataccaaagccaaacaaggacagtataagaaaa--aaaagtgacggcctatatccctgataaacacagatgcaaaaatcctcaacagaataatagtaaatcaaattcaaccatgcatcaaaaggatcattcaT i otoGar3.GL873602 C 0 I 463 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e calJac3.chr3 52981829 1611 - 190850796 I e canFam3.chr13 47947735 972 + 63241923 I a score=2940300.000000 s hg38.chr4_KI270787v1_alt 13127 337 + 111943 caaaaggataattcatcgagatcaagtaggattaaccctgggatgcaaagaaggttcaacataggtaaattaaatatat-------gtaatgtactgcattaagagaatgaaggtcaggaatcacataatcatctcaatagatgcaggaaaggcatttggcaacattcaacatcttacaatgataaatactctcaatacattaggtacagaaggaatgtatcttaatacaacaaagtctatatatgacaagccaataactagcattagtgaaaagttaaaaaatcagaaaggaagaagttatttctgtttgtgaatgacatgatcttatataaagaaaatccta s panTro5.chr4 119575435 337 - 194502333 caaaaggataattcatcgagatcaagtaggattaaccctgggatgcaaagaaggttcaacataggtaaattaaatatat-------gtaatgtactgcattaagagaatgaaggtcaggaatcacataatcatctcaatagatgcaggaaaggcatttggcaaaattcaacatcttacaatgataaatactctcaatacattaggtacagaaggaatgtatcttaatacaacaaagtctatatatgacaagccaataactagcattagtgaaaagttaaaaaatcagaaaggaagaagttatttctgtttgtgaatgacatgatcttatataaagaaaatccta i panTro5.chr4 C 0 C 0 s panPan2.chr4 120991714 337 - 195804263 caaaaggataattcatcgagatcaagtaggattaaccctgggatgcaaagaaggttcaacataggtaaattaaatatat-------gtaatgtactgcattaagagaatgaaggtcaggaatcacataatcatctcaatagatgcaggaaaggcatttggcaaaattcaacatcttacaatgataaatactctcaatacattaggtacagaaggaatgtatcttaatacaacaaagtctatatatgacaagccaataactagcattagtgaaaagttaaaaaatcagaaaggaagaagttatttctgtttgtgaatgacatgatcttatataaagaaaatccta i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4422784 337 - 17550833 caaaaggataattcatcgagatcaagtaggattaaccctgggatgcaaagaagtttcaacataggtaaattaaatatat-------gtaatgtactgcattaagagaatgaaggtcaggaatcacataatcatctcaatagatgcaggaaaggcatttggcaaaattcaacatcttacaatgataaatactctcaatacattaggtacagaaggaacgtatcttaatacaacaaagtctatatataacaagccaataactagcattagtgaaaagttaaaaaatcagaaaggaagaagttatttctgtttgtgaatgacatgatcttatataaagaaaatccta i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69299956 334 - 118206036 caaaaggataattcattgagatcaagtaggattaaccctgggatgcaaggaaggttcaacataggcaaagtaaatatat-------gtaatgtactgcattaagagaatgaaggacaggaatcacataatcatctcaatagatgcaggaaaggcatttggcaaaattcaacatcttacaatgataaatactctccatacattaggtacagaaggaatgtatcttaacacaacaaagtctata---acaaagccaataactagcattagtgaaaagttaaaaaatcagaaaggaagaagttatttctgtttgtgaatgacatgatcttatataaagaaaatccta i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111504850 342 - 190429646 caaaaggataattcatcaggatcaagtaggattaaccctcggatgcaaggaaggttcaacataggcaaattaaatatatgtaatgcgtaatgtaccgaattaagagaatgaaggacaggaatcacataatcatctcaaaagatgcaggaaaggcatttgacaaaattcaacatctcaccatgataaatactctcaatacattaggtacagaaggaatgtatcttaacacaataaagtctatatatgacaagccaataactagcattagtgaaaagtt-aaaaatcagaaaggaagaagttatttctgtttgtg-ttgacatgatcttatataaagaaaatccta i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110672961 342 - 189454096 caaaaggataattcatcaggatcaagtaggattaaccctcggatgcaaggaaggttcaacataggcaaattaaatatatgtaatgtgtaatgtaccgaattaagagaatgaaggacaggaatcacataatcatctcaaaagatgcaggaaaggcatttgacaaaattcaacatctcaccatgataaatactctcaatacattaggtacagaaggaatgtatcttaacacaataaagtctatatatgacaagccaataactagcattagtgaaaagtt-aaaaatcagaaaggaagaagttatttctgtttgtg-ttgacatgatcttatataaagaaaatccta i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13240780 342 + 26754465 caaaaggataattcatcaggatcaagtaggattaaccctcggatgcaaggaaggttcaacataggcaaattaaatatatgtaatgcgtaatgtaccgaattaagagaatgaaggacaggaatcacataatcatctcaaaagatgcaggaaaggcatttgacaaaattcaacatctcaccatgataaatactctcaatacattaggtacagaaggaatgtatcttaacacaataaagtctatatatgacaagccaataactagcattagtgaaaagtt-aaaaatcagaaaggaagaagttatttctgtttgtg-ttgacatgatcttatataaagaaaatccta i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4143096 342 - 5137665 caaaaggataattcatcaggatcaagtaggattaaccctcggatgcaaggaaggttcaacataggcaaattaaatatatgtaatgcgtaatgtaccgaattaagagaatgaaggacaggaatcacataatcatctcaaaaaatgcaggaaaggcatttgacaaaattcaacatctcaccatgataaatactctcaatacattaggtacagaaggaatgtatcttaacacaataaagtctatatatgacaagccaataactagcattagtgaaaagtt-aaaaatcagaaaggaagaagttatttctgtttgtg-ttgacatgatcttatataaagaaaatccta i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 48712 343 - 60632 caaaaggataattcatcaggatcaagtaggattaaccctcggatgcaaggaaggttcaacataggcaaattaaatatatgtaatgtgtaatgtaccgaattaagagaatgaaggacaggaatcacacaatcatctcaaaagatgcacgaaaggcatttgacaaaattcaacctctcaccatgataaatactctcaatacattaggtacagaaggaatatatcttaacacaataaagtctatatatgacaagtcaataactagcattagtgaaaagttaaaaaatcagaaaggaagaagttatttctgtttgtg-ttgacatgatcttatataaagaaaatccta i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1958338 342 + 2427316 caaaaggataattcatcaggatcaagtaggattaaccctcggatgcaaggaaggttcaacataggcaaattaaatatatgtaatgcgtaatgtaccgaattaagagaatgaaggacaggaatcacataatcatctcaaaagatgcaggaaaggcatttgacaaaattcaacatctcaccatgataaatactctcaatacattaggtacagaaggaatgtatcttaacacaataaagtctatatatgacaagccaataactagcattagtgaaaagtt-aaaaatcagaaaggaagaagttatttctgtttgtg-ttgacatgatcttatataaagaaaatccta i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1245189 343 + 1448899 caaaaggataattcatcaggatcaagtaggattaaccctcggatgcaaggaaggttcaacataggcaaattaaatatatgtaatgtgtaatgtatccaattaagagaatgaaggacaggaatcacataatcatctcaaaagatgcaggaaaggcatttgacaaaattcaacatctcaccatgataaatactctcaatacattaggtacagaaggaacatatcttaacacaataaagtctatatatgacaagccaataactagcattagtgaaaagttaaaaaatcagaaaggaagaagttacttctgtttgtg-ttgacatggtcttatataaagaaaatccta i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8146039 335 - 15139346 caaaagaataattcatcaagatgaagtaggattaactctgggatgcaaggaaggttcaacataggcaaattaaatatat-------gtaatatactgcattaagagactaaaggacaggaatcacataatcatctcaatagatgcaggaaaggcatttgacaaacttcaacatcttacaatgataaatactctcaatacattagata-agaaggaatgtatcttaacacaataaagtctatatatgacaagcccat-actaacattggtgaaaagttaaaatatcagaaaggaagaagtgatttctgtttgtggatgacatgatcttatataaagaaaacccta i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6935090 336 - 7304997 caaaaggataattcatgaagatcaagtaggattaactctgagatgcaaggaaggttcaacataggcaaattaaatatat-------ataatgtactgcattaagagaataaaggacagg-attacataatcatctcaatagatgcaggaaaggcatttgacaaacttcaacatcttacaatgataaatactctcaatacattaggtacagaaggaatgtatcttaacacaataaagtctatatatgacaagcccataactaacattggtgaaacgttaaaaaatcagaaaggaagaagtgatttctgtttgtggatgacatgatcttatataaagaaaacccta i cebCap1.NW_016107439v1 C 0 I 220 s aotNan1.NW_018493494v1 9346498 337 - 11631747 caaaaaaataattcatcaagatcaagtaggattaactctgggatgcaaggaaggttcaacataggcaaattaaatatat-------gtaatgtactgcattaagagaataaaggacgggaattacataatcatctcagtagatgtaggaaaggcatttgacaagcttcaacatcttacaatgataaatactctcaatacattacatacagaaggaatgtatcttaacacaataaagtccatatatgacaagcccataactaacattggtgaaaagttaaaaaatcagaaaggaagaagtgatttctgtttgtggatgacatgatcttatatgaagaaaatccta i aotNan1.NW_018493494v1 C 0 I 3542 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I a score=178012.000000 s hg38.chr4_KI270787v1_alt 13464 31 + 111943 GGGtctgttccaagatggccaaataagaaca s panTro5.chr4 119575772 31 - 194502333 GGGtctgttccaagatggccaaataagaaca i panTro5.chr4 C 0 C 0 s panPan2.chr4 120992051 31 - 195804263 GGGtctgttccaagatggccaaataagaaca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4423121 31 - 17550833 gggtccgttccaagatggccaaataagaaca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69300290 31 - 118206036 gggtccgttccaagatggccgaataggaaca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111505192 31 - 190429646 gggtccattccaagatggccgaataggaaca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110673303 31 - 189454096 gggtccattccaagatggccgaataggaaca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13241122 31 + 26754465 gggtccattccaagatggccgaataggaaca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4143438 31 - 5137665 GGGTCCTttccaagatggccgaataggaaca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 49055 31 - 60632 gggtccattccaagatggccgaataggaata i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1958680 31 + 2427316 gggtccattccaagatggccgaataggaaca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1245532 31 + 1448899 gggtccattccaagatggccgaataggaaca i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8146374 19 - 15139346 -----------aagacta-caaataaaaata i saiBol1.JH378162 C 0 I 3483 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I a score=6021170.000000 s hg38.chr4_KI270787v1_alt 13495 1091 + 111943 gctccggtctgcagctcccagcgtgatcgatgcagaaaacaggtgatttctgcatttccaactgagcctctgctggtggtacccaggcaaacagggtctggagtggacctccagcaaactccaacagacctgcagctgagggacctgtttgaaggaaaactaacaaacagaaaggaataacatcaacatcaacaaaaaggacatccacaccaaaaccccatctgtaggtcaccaacatcaaagaccaaaggtagataaaaccacaaagatggggagaaaccagagca-gaaaagttgaaaattctaaaaacc-gagagcctcttctcttccaaaggatcacagctccttgccagcaatggaacaaagctggatggagaatgactttgacgagttgacagaagtaggcttcagaaggttggtaataacaaacttctctgagctaaaggaggatgtttgaacccatcgcaaggaagctaaaaaccttg-aaaaaagattagatgaatggctaagtaaaataaacagtgtagagaagaccttaaatgacct-gatagagctgaaaaccatggcatgagaactacgtgatgcatgcacaagcttcagcagctgatttgatcaagtggaagaaagggtatcagtgatacaagatcaaattaatgaaataaagtgagaagagaagtttaga-aaaaaagagtaaaaagaaatgaacaaagcctccaagaa-----------------------------------------------atatgggactatgtgaaaagaccaaat-atatgtttgattggtgtacctgaaagtgacagggagaatggaaccaagttggaaaacactcttcaggatattatcaaagagaacttccccaacctagcaaggcaggccaacattcaaattcaggaactacagagaagatcacaaagatactcctcaagaagagcaactccaagacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatattaagggcagccagagagaaaaatcaggttaccttcaaagggaaacccatcagactaacaacggatctctttgcagaaactctacaagccagaagagagtggaggccaatattcaacattctta--aa s panTro5.chr4 119575803 1091 - 194502333 gctccggtctgcagctcccagcgtgatcgatgcagaaaacaggtgatttctgcatttccaactgagcctctgctggtggtacccaggcaaacagggtctggagtggacctccagcaaactccaacagacctgcagctgagggacctgtttgaaggaaaactaacaaacagaaaggaataacatcaacatcaacaaaaaggacatccacaccaaaaccccatctgtaggtcaccaacatcaaagaccaaaggtagataaaaccacaaagatggggagaaaccagagca-gaaaagttgaaaattctaaaaacc-gagagcctcttctcttccaaaggatcacagctccttgccagcaatggaacaaagctggatggagaatgactttgacgagttgacagaagtaggcttcagaaggttggtaataacaaacttctctgagctaaaggaggatgttcgaacccatcgcaaggaagctaaaaaccttg-aaaaaagattagatgaatggctaagtagaataaacagtgtagaggagaccttaaatgacct-gatagagctgaaaaccatggcatgagaactacgtgatgcatgcacaagcttcagcagctgatttgatcaagtggaagaaagggtatcagtgatacaagatcaaattaatgaaataaagtgagaagagaagtttaga-aaaaaagagtaaaaagaaatgaacaaagcctccaagaa-----------------------------------------------atatgggactatgtgaaaagaccaaat-atatgtttgattggtgtacctgcaagtgacagggagaatggaaccaagttggaaaacactcttcaggatattatcaaagagaactttcccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacatcacaaagatactcctcaagaagagcaactccaagacacataattgtcatattcaccaaggttgaaatggaggaaaaaatgttaagggcagccagagagaaaaatcaggttaccctcaaagggaagcccatcagactaacaacggatctctttgcagaaactctacaagccagaagagagtggaggccaatattcaacattctta--aa i panTro5.chr4 C 0 C 0 s panPan2.chr4 120992082 1092 - 195804263 gctccggtctgcagctcccagcgtgatcgatgcagaaaacaggtgatttctgcatttccaactgagcctctgctggtggtacccaggcaaacagggtctggagtggacctccagcaaactccaacagacctgcagctgagggacctgtttgaaggaaaactaacaaacagaaaggaataacatcaacatcaacaaaaaggacatccacaccaaaaccccatctgtaggtcaccaacatcaaagaccaaaggtagataaaaccacaaagatggggagaaaccaaagcaggaaaagttgaaaattctaaaaacc-gagagcctcttctcttccaaaggatcacagctccttgccagcaatggaacaaagctggatggagaatgactttgacgagttgacagaagtaggcttcagaaggttggtaataacaaacttctctgagctaaaggaggatgttcgaacccatcgcaaggaagctaaaaaccttg-aaaaaagattagatgaatggctaagtagaataaacagtgtagaggagaccttaaatgacct-gatagagctgaaaaccatggcatgagaactacgtgatgcatgcacaagcttcagcagctgatttgatcaagtggaagaaagggtatcagtgatacaagatcaaattaatgaaataaagtgagaagagaagtttaga-aaaaaagagtaaaaagaaatgaacaaagcctccaataa-----------------------------------------------atatgggactatgtgaaaagaccaaat-atatgtttgattggtgtacctgcaagtgacagggagaatggaaccaagttggaaaacactcttcaggatattatcaaagagaactttcccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacatcacaaagatactcctcaagaagagcaactccaagacacataattgtcatattcaccaaggttgaaatggaggaaaaaatgttaagggcagccagagagaaaaatcaggttaccctcaaagggaagcccatcagactaacaacggatctctttgcagaaactctacaagccagaagagagtggaggccaatattcaacattcttg--aa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4423152 1139 - 17550833 gctccggtctgcagctcccagcgtgatcgatgcagaaaacaggtgatttctgcatttccaactgagcctctgctggtggtacccaggcaaacagggtctgaagtggacctccagcaaactccaacagacctgcagctgagggacctgtttgaaggaaaactaacaaacagaaaggaataacatcaacatcaacaaaaaggacatccacaccaaaaccccatctgtaggtcaccaacatcaaagaccaaaggtagataaaaccacaaagatggggagaaaccagagca-gaaaagctgaaaattctaaaaaccagagagcctcttctcttccaaaggatcacagctccttgccagcaatggaacaaagctggatggagaatgactttgacgagttgacagaagtaggcttcagaaggttggtaataacaaacttctctgagctaaagaaggatgttcgaacccatcgcaaggaagctaaaagccttg-aaaaaagattagatgaatggctaagtagaataaacagtgtagagaagaccttaaatgacct-gatagagctgaaaaccatggcatgagaactacgtgatgcatgcacaagcttcagcagctgatttgatcaagtggaagaaagggtatcagtgataaaagatcaaattaatgaaataaagtgagaagagaagtttaga-aaaaaagagtaaaaagaaatgaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatatgaacaaagcctccaagaaatatgggactatgtgaaaagaccaaat-atatgtttgattggtgtacccgaaagtgacagggagaatagaaccaagttggaaaacactcttcaggatattatcaaagagaatttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacatcacaaagatactcctcaagaagagcaactccaagacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgttaagggcagccagagagaaaaatcaggttaccctcaaagggaagcccatcagactaacaacagatctctttgcagaaactttacaagccagaagagactggaggccaatattcaacattctta--aa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69300321 1088 - 118206036 gctccggtctgcagctcccagcgtgatcgatgcagaagacaggtgatttctgcatttccacctgagcctctgctggtggtacccaggcaaaca--gtctggagtggacctccagcaaactccaacagacctgcagctgagggacctgtttgaaggaaaactaacaaacagaaaggaatagcatcaacatcaacaaaaaggacatccataccaaaaccccatctgtaggtgaccaacatcaaagaccaaaggtagataaaaccacaaagatggggagaaaccagagca-gaaaagctgaaaattctaaaaaccagagaggctcttctcctccaaaggatcgcagctccttgccatcaatagaacaaagctggacagagaatgacttttacgagttgatagaagtaggcttcagaaggttggtaataacaaacttctctgagctaaaggaggat-ttcgaacccatcgcaaggaagctaaaaaccttg-aaaaaagattagatgaatggctaactagaataaacagtggagagaagaccttaaatgacct-gatagagctgaaaaccatggcatgtgaactacatgatgcatgcacaagcttcagtagctgatttgatcaagtggaagaaagggtatcagtgatagaagatcaaattaatgaaatgaagcaagaagagaagtttaga-aaaaaagagtaaaaagaaacaaacaaagcctaccagaa-----------------------------------------------atatgggactatgtgaaaagaccaaat-atatgtttgattggtgtacctgaaagtgacagagagaatagaaccaaggtggaaaacactctgcaggatattatcgaagagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacatcacaaagatactcctcgagaagagcaactccaagacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgttaacggcagccagagagaaaggtcgggttacccacaaagggaagcccatcagactaacagctgatctcttggcagaaactctacaagccagaagagagtgg-ggccaatattcaacaatctta--aa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111505223 1077 - 190429646 gctctggtctgcagctcccagcgtgattgacgcagaagacgggtaatttctgcatttccaactgagcctccgctggtgataccccagcaaacagggtctggagtagacctccagcaaactccaacagacctgcagcggagggacctgttagaaggaaaactaacaaacagaaaggaatagcatcaacatcaacaaaaatgacatccacaccaaaaccccatctgtaggtcaccaatatcaaagaccaaaggtagataaaaccacaaagatggggag---------------aaactgaaaattctaaaaaccagagtccctcttctcctctaaaggattgcagctcctcgccagcaacggaacaaagctggacggagaatgaatttgcggcattgacagggatcggcttcaaaaggtcagtaataacaaacttctctgagctaaaggaggttgttcaaacccattgcaaggaagctaaaaaccttgaaaaaaagactagatgaatggctaactagaataaacagtgtagagaagaccttaaatga-ct-gatacagctgaaaaccatggcacgagaactacgtgatgtatgcccaagcttcagtagctgatttgatcaagtgtaagaaagggtatcagtgattgaagatcaaattaatgaaataaagcaagaagagaaatttagagaaaaaagagtaaaaagaaatgaacaaagcctccaagaa-----------------------------------------------atatgggactctgtgaaaagaccaaat-atacatttgattggtgtacctgaaaatgacagggagaatacaatcaagttggaaaacactcttcaggatattatccaagagaatttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacaccacaaagatagtcctcgagaagaacagctccaagatacataattgtcagattcaccaaaattgaactgaaggaaaaaatgttaagggcaaccagagagaaaggacgggttacccacaaagggaagcccatcagactaacagcggatctctcggcagaaacactacaagccagaagaaagtgaaggccaatgttcaacattctta---- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110673334 1091 - 189454096 gctctggtctgcagctcccagcgtgattgacgcagaagacgggtaatttctgcatttccaactgagcctccgctggtgataccccagcaaacagggtctggagtagacctccagcaaactccaacagacctgcagcggagggacctgttagaaggaaaactaacaaacagaaaggaatagcatcaacatcaacaaaaatgacatccacaccaaaaccccatctgtaggtcaccaatatcaaagaccaaaggtagataaaaccacaaagatggggagaaaccagagca-gaaaaactgaaaattctaaaaaccagagtccctcttctcctctaaaggattgcagctcctcgccagcaacggaacaaagctggacggagaatgaatttgcggcattgacagggatcggcttcaaaaggtcagtaataacaaacttctctgagctaaaggaggttgttcaaacccattgcaaggaagctaaaaaccttgaaaaaaagactagatgaatggctaactagaataaacagtgtagagaagaccttaaatga-ct-gatacagctgaaaaccatggcacgagaactacgtgatgtatgcccaagcttcagtagctgatttgatcaagtgtaagaaagggtatcagtgattgaagatcaaattaatgaaataaagcaagaagagaaatttagagaaaaaagagtaaaaagaaatgaacaaagcctccaagaa-----------------------------------------------atatgggactatgtgaaaagaccaaat-atacatttgattggtgtacctgaaaatgacagggagaatacaatcaagttggaaaacactcttcaggatattatccaagagaatttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacaccacaaagatagtcctcgagaagagcagctccaagatacataattgtcagattcaccaaaattgaactgaaggaaaaaatgttaagggcagccagagagaaaggacgggttacccacaaagggaagcccatcagactaacagcggatctctcggcagaaacactacaagccagaagaaagtgaaggccaatgttcaacattctta---- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13241153 1091 + 26754465 gctctggtctgcagctcccagcgtgattgacgcagaagacgggtaatttctgcatttccaactgagcctccgctggtgataccccagcaaacagggtctggagtagacctccagcaaactccaacagacctgcagcggagggacctgttagaaggaaaactaacaaacagaaaggaatagcatcaacatcaacaaaaatgacatccacaccaaaaccccatctgtaggtcaccaatatcaaagaccaaaggtagataaaaccacaaagatggggagaaaccagagca-gaaaaactgaaaattctaaaaaccagagtccctcttctcctctaaaggattgcagctcctcgccagcaacggaacaaagctggacggagaatgaatttgtggcactgacagggatcggcttcaaaaggtcagtaataacaaacttctctgagctaaaggaggttgttcaaacccattgcaaggaagctaaaaaccttgaaaaaaagactagatgaatggctaactagaataaacagtgtagagaagaccttaaatga-ct-gatacagctgaaaaccatggcacgagaactacgtgatgtatgcccaagcttcagtagctgatttgatcaagtgtaagaaagggtatcagtgattgaagatcaaattaatgaaataaagcaagaagagaaatttagagaaaaaagagtaaaaagaaatgaacaaagcctccaagaa-----------------------------------------------atatgggactatgtgaaaagaccaaat-atacatttgattggtgtacctgaaaatgacagggagaatacaatcaagttggaaaacactcttcaggatattatccaagagaatttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacaccacaaagatagtcctcgagaagagcagctccaagatacataattgtcagattcaccaaaattgaactgaaggaaaaaatgttaagggcagccagagagaaaggacgggttacccacaaagggaagcccatcagactaacagcggatctctcggcagaaacactacaagccagaagaaagtgaaggccaatgttcaacattctta---- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4143469 1091 - 5137665 gctctggtctgcagctcccagcatgattgacgcagaagacgggtaatttctgcatttccaactgagcctccactggtgataccccagcaaacagggtccggggtagacctccagcaaactccaacagacctgcagcggagggacctgttagaaggaaaactaacaaacagaaaggaatagcatcaacatcaacaaaaatgacatccacaccaaaaccccatctgtaggtcaccaatatcaaagaccaaaggtagataaaaccacaaagatggggagaaaccagagca-gaaaaactgaaaattctaaaaaccagagtccctcttctcctctaaaggactgcagctcctcgccagcaacggaacaaagctggacggagaatgaatttgaggcattgacaggggtcggcttcaaaaggtcagtgataacaaacttctctgagctaaaggaggttgttcgaacccattgcaaggaagctaaaaaccttgaaaaaaagactagatgaatggctagctagaataaacagtgtagagaagaccttaaatga-ct-gatacagctgaaaaccatggcacaagaactacgtgacgtatgcccaagcttcagtagctgatttgatcaagtgtaagaaagggtatcagtgattgaagatcaaattaatgaaataaagcaagaagagaaacctaaagaaaaaagaagaaaaagaaatgaacaaagcctccaagaa-----------------------------------------------atatgggactatgtgaaaagaccaaat-atacatttgattggtgtacctgaaaatgacagggagaatacaatcaagttggaaaacactcttcaggatattatccaagagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacaccacaaagatagtcctcgagaagagcagctccaagatacataattgtcagattcaccaaaattgaactgaaggaaaaaatgttaagggcagccagagagaaaggtcgagttacccacaaagggaagcccatcagactaacagcggatctctcggcagaaacactacaagccagaagaaagtgaaggccaatgttcaacattctta---- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 49086 1091 - 60632 gctctggtctgcagctcccagcgtgattgacgcagaagacgggtaatttctgcatttccaactgagcctccgctggcgataccctggcagacagggtctggagtagacctccagcaaactccaacagacctgcagcggagggacctgttagaaggaaaactgaaaaacagaaaggaataacatcaatatcaacaaaaatgacatccacaccaaaactccatctgtaggtcaccaatatcaaagaccaaaggtagataaaaccacaaagatggggagaaaccagagca-gaaaaactgaaaattctaaaaaccagagtccctcttctcctctaaaggattgcagctcctcgccagcaatggaacaaagctggacagagaatgaatttgaggcattgacagggatcggcttcaaaaggtcagtaataacaaacttctctgagctaaaggaggttgttcgaacccgttgcaaggaagctaaaaaccttgaaaaaaagactagatgaatggctaactagaataaacaatgtagagaagaccttaaatga-ct-gatacagctgaaaaccatggcacgagaaatacgtgacatatgcccaagcttcagtagctgatttgatcaagtgtaagaaagggtatccgtgattgaatatcaaattaatgaaataaagcaagaagagaaatttagagaaaaaagagtaaaaagaaacgaacaaagcctgcaagaa-----------------------------------------------atatgggactatgtgaaaagaccaaat-atacatttgattggtgtacctgaaagtgacagggagaatacaatcaagttggaaaacactcttcaggatattatccaagagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacaccacaaagatagtcctcgagaagagcagctccaagatacataattgtcagattcaccaaagttgaaatgaaggaaaaaatattaagggcagtcagagagaaaggtcgggttacccacaaagggaagcccatcagactaatagcagatctcttggcagaaacactacaagccagaagaaagtgcaggccaatattcaacattctta---- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1958711 1091 + 2427316 gctctggtctgcagctcccagcgtgattgacgcagaagacgggtaatttctgcatttccaactgagcctccgctggtgataccccagcaaacagggtccggggtagacctccagcaaactccaacagacctgcagcggagggacctgttagaaggaaaactaacaaacagaaaggaatagcatcaacatcaacaaaaatgacatccacaccaaaaccccatctgtaggtcaccaatatcaaagaccaaaggtagataaaaccacaaagatggggagaaaccagagca-gaaaaactgaaaattctaaaaaccagagtccctcttctcctctaaaggactgcagctcctcgccagcaacggaacaaagctggacggagaatgaatttgaggcattgacaggggtcggcttcaaaaggtcagtgataacaaacttctctgagctaaaggaggttgttcgaacccattgcaaggaagctaaaaaccttgaaaaaaagactagatgaatggctagctagaataaacagtgtagagaagaccttaaatga-ct-gatacagctgaaaaccatggcacaagaactacgtgacgtatgcccaagcttcagtagctgatttgatcaagtgtaagaaagggtatcagtgattgaagatcaaattaatgaaataaagcaagaagagaaatttagagaaaaaagagtaaaaagaaatgaacaaagcctccaagaa-----------------------------------------------atatgggactatgtgaaaagaccaaat-atacatttgattggtgtacctgaaaatgacagggagaatacaatcaagttggaaaacactcttcaggatattatccaagagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacaccacaaagatagtcctcgagaagagcagctccaagatacataattgtcagattcaccaaaattgaactgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttacccacaaagggaagcccatcagactaacagcggatctctcggcagaaacactacaagccagaagaaagtgaaggccaatgttcaacattctta---- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1245563 1094 + 1448899 gctccggtctgcagctcccagcgtgattgacacagaagatgggtgatttctgcgtttccaactgagcctccactggtggtaccccggcaaacagggtctggagtagacctccagcaaactccaacagacctgcggcggagggacctgttagaaggaaaactaacaaacagaaaggaatagcatcaatgtcaacaaaaatgacatccacacgaaaaccccatctgtaggtcaccaatatcaaagaccaaagatagataaaaccacaaagatggggagaaaccagagca-gaaaaactgaaaattctaaaaaccagagt-cctcttctcctctaaaggatcgcagctcctcaccagcaatggaacaaagctggatggagaatgactttgaggcattcacaggggtcggcttcaaaaggtcagtaataacaaacttctctgagccaaaggaggttgttcgaacccattgcaaggaagctaaaaaccttgaaaaaaagactagatgaatggctaactagaataaacactgtaaagaagaccttaaatga-ctggatacagctgaaaaccatgacacgagaactacatgacgtatgcccaagctccagtagctgatttgatcaagtgtaagaaagggtatcagtgattgaagatcaaattaatgaaataaagcaagaagagaaatttagagaaaaaagagtaaaaagaaacgaagaaagcctccaagaa-----------------------------------------------atatgggactatgtgaaaagaccaaataatacgtttgattggtgtacctgaaagtgacaggaagaatacaatcaagttggaaaacactcttcaggatattatccaagagaacttccccaacctaggaaggcaggccaacattcaaattcaggaaatacagagaacaccacaaagatagtcctcgagaagagcaactccaagatacgtaattgtcagattcaccaaaattgaactgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttacccacaaagggaagcccatcagactaacagcggatctctgggcagaaacaccacaagccagaagaaagtggaggccaatattcaacattcttaaa-- i colAng1.NW_012119221v1 C 0 I 1076 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I a score=1138231.000000 s hg38.chr4_KI270787v1_alt 14586 243 + 111943 gaaaagaattttcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagaga-ttttgtcaccaccaggcttgccttacaagagctcctgaaggaagcactaaacatggaaaggaacaaccagtaccagccactgcaaaaacatgccaaattgtaaagaccatcgatgctgtgaagaaactgaatcaactaacagcta------------------- s panTro5.chr4 119576894 243 - 194502333 gaaaagaattttcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagaga-ttatgtcaccaccaggcttgccttacaagagctcctgaaggaagcactaaacatggaaaggaacaaccagtaccagccactgcaaaaacatgccaaattgtaaagaccatcgatgctgtgaagaaactgaatcaactaacagcta------------------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 120993174 243 - 195804263 gaaaagaattttcaacccacaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagaga-ttatgtcaccaccaggcttgccttacaagagctcctgaaggaagcactaaacatggaaaggaacaaccagtaccagccactgcaaaaacatgccaaattgtaaagaccatcgatgctgtgaagaaactgaatcaactaacagcta------------------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4424291 243 - 17550833 gaaaagtattttcaacccagaatttcatatccagccaaactaagtttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagaga-ttttgtcaccaccaggcttgccttacaagagctcctgaaggaagcactaaacatggaaaggaacaaccagtaccagccactgcaaaaacatgccaaattgtaaagaccatcgaggctaggaagatactgcatcaactaacagcta------------------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69301409 244 - 118206036 gaaaagaattttcaacccagaatctcatatccagccaaactaagctgcataagtgaaggagaaataaaatactttacagacaagcaaatgctgagagatttttgtcaccaccaggcctgccttacaagagttcctgaacgaagcactaaatgtggaaaggaacaaccagtaccagccactgcaaaaacatgccaaattgtaaagaccatcgatgccgtgaagaaactgaatcaactaacagCTA------------------- i nomLeu3.chr9 C 0 I 462 s rheMac8.chr5 111506300 260 - 190429646 -aaaagaattttcaa-ccagaatttcatatccagtcaaactaagcttcataagcaaagaagaaataaaatcctttacagacaagcaaatgctgagaga-ttttgtcaccaccaggcctgccttacaagagttcctgagggaagcactaaacatggaaaggaacaaccagtaccagccattgcaaaaacatgccaaactgtgaagaccatcaatgctgtgaagaaactgcatcaactaacaggcaaaataacatctaacagcta i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110674425 260 - 189454096 -aaaagaattttcaa-ccagaatttcatatccagtcaaactaagcttcataagcaaagaagaaataaaatcctttacagacaagcaaatgctgagaga-ttttgtcaccaccaggcctgccttacaagagttcctgaaggaagcactaaacatggaaaggaacaaccagtaccagtcactgcaaaaacatgccaaattgtgaagaccgtcaatgctgtgaagaaactgcatcaactaacaggcaaaataacatctaacagcta i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13242244 258 + 26754465 -aaaagaattttcaa-ccagaatttcatatccagtcaaactaagcttcataagcaaagaagaaataaaatcctttacagacaagcaaatgctgagaga-ttttgtcaccaccaggcctgccttacaagag--cctgaaggaagcactaaacatggaaaggaacaaccagtaccagtcactgcaaaaacatgccaaattgtgaagaccatcaatgctgtgaagaaactgcatcaactaacaggcaaaataacatctaacagcta i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4144560 260 - 5137665 -aaaagaattttcaa-ccagaatttcatatccagtcaaactaagcttcataagcaaagaagaaataaaatcctttacagacaagcaaatgctgagaga-ttttgtcaccaccaggcctgccttacaagagttcctgaaggaagcactaaacatggaaaggaacaaccagtaccagtcactgcaaaaacatgccaaattgtgaagaccatcaatgctgtgaagaaactgcatcaactaacaggcaaaataacatctaacagcta i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 50177 260 - 60632 -aaaagaattttcaa-ccagaatttcatatccagtcaaactaagcttcataagcaaagaagaaataaaatcctttacagacaagcaaatgctgagaga-ttttgtcaccaccaggcctgccttacaagagttcctgaaggaagcgctaaacatggaaaggaacaaccagtaccagtcactgcaaaaacatgccaaattgtgaagaccatcaatgctgtgaagaaactgcatcagctaacgggcaaaataatatctaacagcta i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1959802 260 + 2427316 -aaaagaattttcaa-ccagaatttcatatccagtcaaactaagcttcataagcaaagaagaaataaaatcctttacagacgagcaaatgctgagaga-ttttgtcaccaccaggcctgccttacaagagttcctgaaggaagcactaaacacggaaaggaacaaccagtaccagtcactgcaaaaacatgccaaattgtgaagaccatcaatgctgtgaagaaactgcatcaactaacaggcaaaataacatctaacagcta i manLeu1.NW_012104388v1 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e colAng1.NW_012119221v1 1246657 1076 + 1448899 I a score=844812.000000 s hg38.chr4_KI270787v1_alt 14829 221 + 111943 acatcataatgacaggctcaaattcacacctaacaatattaaccttaaatataaatgggctaaatgccccacttgaaagacacagactggcaaattggatagagtcaagacccatcagtgtgctgtattcaggaaacccatctcatgtgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaa--g-aaaaaaaaaag s panTro5.chr4 119577137 221 - 194502333 acatcataatgacaggctcaaattcacacctaacaatattaaccttaaatataaatgggctaaatgccccacttgaaagacacagactggcaaattggatagagtcaagacccatcagtgtgctgtattcaggaaacccatctcatgtgcagagacacacataggctcaaaataaagggatggaggaagatctaacaagcaaatggaaa--g-aaaaaaaaaag i panTro5.chr4 C 0 C 0 s panPan2.chr4 120993417 220 - 195804263 acatcataatgacaggctcaaattcacacctaacaatattaaccttaaatataaatgggctaaatgccccacttgaaagacacagactggcaaattggatagagtcaagacccatcagtgtgctgtattcaggaaacccatctcatgtgcagagacacacataggctcaaaataaagggatggaggaagatctaacaagcaaatggaaa--g--aaaaaaaaag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4424534 222 - 17550833 acatcataatgacaggctcaaattcacacctaacaatattaaccttaaatataaatgggctaaatgccccacttgaaagacacagaatggcaaattggatagagtcaagacccatcagtgtgctgtattcaggaaacccatctcatgtgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaa--gaaaaaaaaaaag i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111506560 219 - 190429646 acattgtaatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgccccagttgaaagacacagactggcaaattgg-tagagtcaagacccatcagtgtgctgtattca-gagatccatctcatgtgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaa--a-aaaaaaaaaaa i rheMac8.chr5 C 0 I 6 s macFas5.chr5 110674685 219 - 189454096 acattgtaatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgccccagttgaaagacacagactggcaaattgg-tagagtcaagacccatcagtgtgctgtattca-gagatccatctcatgtgcagagacacacataggctcaaaattaagggatggaggaagatctaccaagcaaatggaaa--a-aaaaaaaaaaa i macFas5.chr5 C 0 I 6 s macNem1.NW_012012466v1 13242502 219 + 26754465 acattgtaatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgccccagttgaaagacacagactggcaaattgg-tagagtcaagacccatcagtgtgctgtattca-gagatccatctcatgtgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaa--a-aaaaaaaaaaa i macNem1.NW_012012466v1 C 0 I 6 s cerAty1.NW_012001307v1 4144820 219 - 5137665 acattgtaatgacagaatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgccccagttgaaagacacagactggcaaattgg-tagagtcaagacccatcagtgtgctgtattca-gagatccatctcatgtgcagagacacatataggctcaaaataaagggatggaggaagatctaccaagcaaatgggaa--a-aaaaaaaaaaa i cerAty1.NW_012001307v1 C 0 I 23 s chlSab2.chr7_KE147969v1_random 50437 222 - 60632 acattgtaatgacaggatcaaattcacacataacaatgttaaccttaaatgtaaatgggctaaatgccccagttgaaagacacagactggcaaattggatagagtcaagacccatcagtgtgctgtattca-gagacccatctcatgtgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaattt-aaaaaaaaaaa i chlSab2.chr7_KE147969v1_random C 0 I 8 s manLeu1.NW_012104388v1 1960062 219 + 2427316 acattgtaatgacagaatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgccccagttgaaagacacagactggcaaattgg-tagagtcaagacccatcagtgtgctgtattca-gagatccatctcatgtgcagagacacatataggctcaaaataaagggatggaggaagatctaccaagcaaatgggaa--a-aaaaaaaaaga i manLeu1.NW_012104388v1 C 0 I 8 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e nomLeu3.chr9 69301653 462 - 118206036 I e colAng1.NW_012119221v1 1246657 1076 + 1448899 I a score=38092.000000 s hg38.chr4_KI270787v1_alt 15050 13 + 111943 gcaggggttgtaa s panTro5.chr4 119577358 13 - 194502333 gcaggggttgtaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 120993637 13 - 195804263 gcaggggttgtaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4424756 13 - 17550833 gcaggggttgcaa i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111506785 13 - 190429646 gcaggggttgcaa i rheMac8.chr5 I 6 C 0 s macFas5.chr5 110674910 13 - 189454096 gcaggggttgcaa i macFas5.chr5 I 6 C 0 s macNem1.NW_012012466v1 13242727 11 + 26754465 --aggggttgcaa i macNem1.NW_012012466v1 I 6 C 0 s chlSab2.chr7_KE147969v1_random 50667 13 - 60632 ccaggagttgcaa i chlSab2.chr7_KE147969v1_random I 8 C 0 s manLeu1.NW_012104388v1 1960289 13 + 2427316 gcaggggttgcaa i manLeu1.NW_012104388v1 I 8 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e nomLeu3.chr9 69301653 462 - 118206036 I e colAng1.NW_012119221v1 1246657 1076 + 1448899 I e cerAty1.NW_012001307v1 4145039 23 - 5137665 I a score=543871.000000 s hg38.chr4_KI270787v1_alt 15063 148 + 111943 tcctagtctctgataaaatagactttaaaccaacaaagatcaaaagagacaaagaaggccattatataatggtaaagggttcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcat s panTro5.chr4 119577371 148 - 194502333 tcctagtctctgataaaatagactttaaaccaacaaagatcaaaagagacaaagaaggccattatataatggtaaagggttcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccaggttcat i panTro5.chr4 C 0 C 0 s panPan2.chr4 120993650 148 - 195804263 tcctagtctctgataaaatagactttaaaccaacaaagatcaaaagagacaaagaaggccattatataatggtaaagggttcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccaggttcat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4424769 148 - 17550833 tcatagtctctgataaaatagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggttcaattcaacaagaagagctaactatcctaaatacatatgcacccaatacaggagcacccagattcat i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111506798 148 - 190429646 tcctagtctctgacaaaacggactttaaaccaacaaagatcaaaagaggcaaagaaggccattacataatagtaaagtgatgaattcaacaagaagagctaactgtcctaaatatatatgcacccaatacaggagcacccagattcac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110674923 148 - 189454096 tcctagtctctgacaaaacggactttaaaccaacaaagatcaaaagaggcaaagaaggtcattacataatggtaaagtgatgaattcaacaagaagagctaactgtcctaaatatatatgcacccaatacaggagcacccagattcac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13242738 122 + 26754465 tcctagtctctgacaaaacggactttaaaccaacaaagatcaaaagag--------------------------aagtgatgaattcaacaagaagagctaactgtcctaaatatatatgcacccaatacaggagcacccagattcac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4145062 148 - 5137665 tcctagtctctgacaaaacagactttaaaccaacaaagatcaaaagaggcaaagaaggccattatataatggtaaagtgatgaattcaacaagaagagctaactgtcctaaatatatatgcacccaatacaggagcacccagattcac i cerAty1.NW_012001307v1 I 23 C 0 s chlSab2.chr7_KE147969v1_random 50680 147 - 60632 tcctagtctctga-aaaacagactttaaatcaacgaagatcaaaagaggcaaagaaggccattacataatggtaaagggatgaattcaacaggaagagctaactgtcctaaatatatatgcacccaatacaggagcacctagattcac i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1960302 148 + 2427316 tcctagtctctgacaaaacagactttaaaccaacaaagatcaaaagaggcaaagaaggccattatataatggtaaagtgatgaattcaacaagaagagctaactgtcctaaatatatatgcacccaatacaggagcacccagattcac i manLeu1.NW_012104388v1 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e nomLeu3.chr9 69301653 462 - 118206036 I e colAng1.NW_012119221v1 1246657 1076 + 1448899 I a score=5733.000000 s hg38.chr4_KI270787v1_alt 15211 3 + 111943 aaa s panTro5.chr4 119577519 3 - 194502333 aaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 120993798 3 - 195804263 aaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4424917 3 - 17550833 aaa i gorGor5.CYUI01014963v1 C 0 C 0 s macFas5.chr5 110675071 3 - 189454096 aaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13242860 3 + 26754465 aaa i macNem1.NW_012012466v1 C 0 I 3101 s chlSab2.chr7_KE147969v1_random 50827 3 - 60632 aaa i chlSab2.chr7_KE147969v1_random C 0 I 2943 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e nomLeu3.chr9 69301653 462 - 118206036 I e colAng1.NW_012119221v1 1246657 1076 + 1448899 I e manLeu1.NW_012104388v1 1960450 0 + 2427316 C e cerAty1.NW_012001307v1 4145210 0 - 5137665 C e rheMac8.chr5 111506946 0 - 190429646 C a score=1476.000000 s hg38.chr4_KI270787v1_alt 15214 2 + 111943 ac s panTro5.chr4 119577522 2 - 194502333 gc i panTro5.chr4 C 0 C 0 s panPan2.chr4 120993801 2 - 195804263 gc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4424920 2 - 17550833 gc i gorGor5.CYUI01014963v1 C 0 C 0 s macFas5.chr5 110675074 2 - 189454096 gc i macFas5.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e nomLeu3.chr9 69301653 462 - 118206036 I e colAng1.NW_012119221v1 1246657 1076 + 1448899 I e manLeu1.NW_012104388v1 1960450 0 + 2427316 C e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I e cerAty1.NW_012001307v1 4145210 0 - 5137665 C e macNem1.NW_012012466v1 13242863 3101 + 26754465 I e rheMac8.chr5 111506946 0 - 190429646 C a score=2400732.000000 s hg38.chr4_KI270787v1_alt 15216 4378 + 111943 aagtccttagagacctacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaatattagacagatcaatgagacagaaggttaacaaggatatccaggacttgaactcagctctgcacctagtggacctaatagacatctacagaactctccaccccaaatcaatgaaacatacattcttctcagcaccacaccgcacttatgccaaaattgaccacatagttggaagtaaagcactcctcagcaaatgtaaaagaacagaaatcacaacaaactgtctctcagaccacagtgcaatcaaattataactcaggattaagaaactcacccgaaactgcacaactacatgctcctgaatgactactgggtacataacgaaatgaaggcaaaaataaagatgttctttgaaaccaatgagaacaaagatacaacataccagaatctctgggagacatttactgcagtgtgtacagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaatcgacacaccctaacatcacaatttaaagaactagagaagcaagagcaaacaaattcaaaactagcagaaggcaagaaataagtaagatcagagcagaactgaaagagatagagacataaaaaacctttcaaaaaaatcaatgaatccagatgctgttttttagaaaagatcaacaaaattgacagaccactatcaagactaacaaagaagaaaggagagaagaatcaaatagacgcaataaaaaatgataaaggtgatattaccactgatgccacagaaatacaaactaccatc-agagaatactataaacacctctacacaaataaactagaaaatttagaagaaatggataaattcctcgacacatacaccctcccaagactaaaccagaaagaagttgaatttctgaatagaccaataacaggctctgaaattgaggcaataattaatagcctaccaaccaaaaaaagtccaggaccagatggattcacagctgaattctaccagaggtacaaggaggagttggtaccattccttctgaaactattccaatcaatagaaaaagagggaatcctccgtaactcattttatgaggccagcatcatcctgataccaaagcctggcagagacacaacaaaaaaagaaaattttagaccaatatccctgatgaacatagatgcaaaaatcctcaataaaatactggcaaactgaatccagcagcacatcaaaaagcttattcaccacaatcaagtcagcttcatcccttatatgcaaagctggttcaacatatgcaaatcagtaaacataatccatcacataaacagaaccaacgacaaaaaccacatgttcatctgaatagatgcagaaaaggccttcaacaaaattcaacagcgcttcatgctaaaaactctc-aataaactaggtattgatggaatgtatctccaaataataagagctgtttatgacaaacccccagccagtatcacaacgaatgggcaaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcaccactcttattcaacatagtgttggaagttctggccagggcagttaggcaagagaaagaaataaagggtattcaattaggaaatgaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctcagcccaaaatctcaagctgataagcaatttcagcaaagtctcaggatacaaaatcaatgtacaaaaatcagaagaactcctatacaccaataacagatgaacagagagccaaatcttgagtgaactcccattcacaattgctacaaagagaataaaatacctaggaatccaactgacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaacgaaataaaggaggacacaaacaaatggaagaacattccatgctcatggatagaaagaagcaatatcgtgaaaacagctatactgcccaaggcaatttatagattgaatgccatcaccatcaagctaccaatgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccataaaagagaccgcattgccagacaatcctaagtaaaaagagcaaagctggaggcatcatactacctgatttcaaactatactacaaggctacagtaaccaaaacagtatggtactggtaccaaaacagagatatagaccaatggaacagaacagagccctcagaaataacaccacacatctgcagccatttgatgtttgacaaaccttgcaaaaacaagaaatggggaaaggattccctatttaataaatggttctgggataactggctagccacatgtagaaaggtgaaactggatcccttccttacactttatacaaaaattaattcaagatggattaaagacttaaatgttagacctaaaaccataaaaaccccagaagaaaatctaggcaataccattcaggacatagtcatgtggaaggacttcatgactaaaacaccaaaagcaatagcaacaaaagccaaaatagacaaatgggatctaatcaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcaatctacccatgtgactaagggctaatatccagaatctacaaagaaattaaacaaatttacag-aaaaaaaaaccccatcaaaaagtgggcaacggttatgaacagacatttctcaaaagaagacatttatgcagccaacagacacgtgaaaaaatgctcatcatcactgaccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggggatcattaaaaagtcaggaaacaacagatgctggagaggatgtggagaaataggaaagcttttacactgttggtgggactgtaaactagttcaaccattgtggaagacaatgtggcgattcctcaaggatctagaactagaaataccatttgatccagccatcccattactgggtatatacccaaaggattataaatcatgctactataaagacacatacacacatatgtttattacagcactattcacaatagcaaagacttggaaccaacccaatgtccatcaatgatagacaggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaaggatagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctgagcaaagaatcataaggacagaaaaccaaacactgcacgttcttactcataggtgggaattgaacaatgagaacatttggacacagggtggggaacatcacacaccggggcctgtcatggggtagggggttgggggagggatagcgttaggagaaatacctaacgtaaatgacgagttgatgggtgcagcaaaccaacacggcacatgtatacctatgtaacaaacctgcacgttgtgcacatgtaccctataacttaaagtataataaaaaaagaaaaccctaaagactctacaaataaaaatattagaacaagtaaacaaattcagtgaagttgcaggataaaaaaaatcaacataacaaaaatcagtagcatttctatacactaacaacaaactaccccccaaaaaatcatgaaaatgatcttgtttatgatagcaactcaaaaaataagatacttaggaataaatttcaccaagggagtgaaagatctgtactctgaaaactataaaacactgatgaacaaaattgaaaaagacaaacataaatgaaaagatattccatgttcatggattggaataattaatatggttaaaatgaccataaaaaacccgaatagcaaagccatcacaagcaaaaagaataaagccaaaggtaccataccaccagatctcaaaatcagaactacaatgtatctccactagaaactaaatgtcagtaccatgctgttttggttactacagctttagtagtagtatagcttaaagctgtagtaaccaaaacagcatggtactgacataaaaactcatacatagtcaaatggaagagaatgagggacccagaatttaatccacatatccacagccaacagatttctgacaaagatgtcaagaatactcactggagaaaggacagtctcttcaacaaatggtgctgggaaaactggatatccatatgcagaagaatgaaactagacccccacctctcaccctatacaaaaatcaactcaaaatgggtc s panTro5.chr4 119577524 4365 - 194502333 aagtccttagagacctacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaatattagacagatcaatgagacagaaggttaacaaggatatccaggacttgaactcagctctgcacctagtggacctaatagacatctacagaactctccaccccaaatcaatgaaacatacattcttctcagcaccacaccgcacttatgccaaaattgaccacatagttggaagtaaaacactcctcagcaaatgtaaaagaacagaaatcacaacaaactgtctctcagaccacagtgcaatcaaattataactcaggattaagaaactcactcgaaactgcacaactacatgctcctgaatgactactgggtacataacgaaatgaaggcaaaaataaagatgttctttgaaaccaatgagaacaaagatacaacataccagaatctctgggagacatttactgcagtgtgtacggggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaatcgacacaccctaacatcacaatttaaagaactagagaagcaagagcaaacaaattcaaaactagcagaaggcaagaaataagtaagatcagagcagaactgaaagagatagagacataaaaaacctttcaaaaaaatcaatgaatccagatgctgttttttagaaaagatcaacaaaattgacagaccactatcaagactaacaaagaagaaaagagagaagaatcaaatagacgcaataaaaaatgataaaggggatattaccactgatgccacagaaatacaaactaccatc-acagaatactataaacacctctacacaaataaactagaaaatttagaagaaatggataaattcctcgacacatacaccctcccaagactaaaccagaaagaagttgaatttctgaatagaccaataacaggctctgaaattgaggcaataattaatagcctaccaaccaaaaaaagtccaggaccagatggattcacagctgaattctaccagaggtacaagaaggagttggtaccattccttctgaaactattccaatcaatagaaaaagagggaatcctccgtaactcattttatgaggccagcatcatcctgataccaaagccgggcagagacacaacaaaaaaagaaaattttagaccaatatccctgatgaacatcgatgcaaaaatcctcaataaaatagtggcaaactgaatccagtagcacatcaaaaagcttattcaccacaatcaagtcagcttcatcccttatatgcaaagctggttcaacatatgcaaatcagtaaacataatccatcacataaacagaaccaatgacaaaaaccacatgttcatctgaatagatgcagaaaaggccttcaacaaaattcaacagcccttcatgctaaaaactctc-aataaactaggtattgatggaatgtacctccaaataataagagctgtttataacaaacccccagccagtatcacaatgaatgggcaaaaaattggaagcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcagttaggcaagagaaagaaataaagggtattcaattaggaaatgaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctcagcccaaaatctcaagctgataagcaatttcagcaaagtctcacgatacaaaatcaatgtacaaaaatcagaagaactcctatacaccaataacagatgaacagagagccaaatcttgagtgaactcccattcacaattgctataaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaacgaaataaaggaggacacaaacaaatggaagaacattccatgctcatggatagaaagaagcaatatcgtgaaaacagctatactgcccaaggcaatttatagattgaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccataaaagagaccgcattgccagacaatcctaagtaaaaagaacaaagctggaggcatcatactacctgacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagagatatagaccaatggaacagaacagagccctcagaaata-------acatctgcagccatttgatgtttgacaaaccttgcaaaaacaagaaatggggaaaggattcccta-ttaataaatggttctgggataactggctagccacatgtagaaaggtgaaaatggatcccttccttacactttatacaaaaattaattcaagatggattaaagacttacatgttagacctaaaaccataaaaaccccagaagaaaacctaggcattaccattcaggacatagtcatgtggaaggacttcatgactaaaacaccaaaagcaatagcaacaaaagccaaaatagacaaatgggatctaatcaaactaaagggcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcaatctacccatgtgactaagggctaatatccagaatctacaaagaaattaaacaaatttacag-aaaaaacaaccccatcaaaaagtgggcaacagttatgaacagacatttctcaaaagaagacatttatgcagccaacagacacgtgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggggatcattaaaaagtcaggaaacaacagatgctggagaggatgtggagaaataggaaagcttttacactgttggtgggactgtaaactagttcaaccattgtggaagacaatgtggtgattcctcaaggatctagaactagaaataccatttgatccagccatcccattactgggtatatacccaaaggattataaatcatgctactataaagacacatgcacacgtatgtttattacagcactattcacaatagcaaagacttggaaccaacccaatgtccatcaatgatagacaggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaaggatagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctgagcaaacaatcataaggacagaaaaccaaacactgcacgttcttactcataggtgggaattgaacaatgagaacatttggacacagggtggggaacatcacacaccggggcctgtcatggggtagggggttgggggagggatagcgttaggagaaatacctaacgtaaatgacaagttgatgggtgcagcaaaccaacacggcacatgtatacctatgtaacaaacctgcacgttgtgcacatgtaccctataacttaaagtataataaaaaaaaaaaaccctaaagactctacaaataaaaatattagaacaagtaaacaaattcagtgaagttgcaggat-aaaaaaatcaacataacaaaaatcagtagcatttctatacactaacaacaaactactccccaaaaaatcatgaaaatgatc----ttatgatagcaactcaaaaaataagatacttaggaataaatttcaccaagggagtgaaagatctgtactctgaaaactataaaacattgacgaacaaaattgaaaaagacaaacataaatgaaaagatattccatgttcatggattggaataattaatatggttaaaatgaccataaaaaacccgaatagcaaagccatcacaagcaaaaagaataaagccaaaggtaccataccaccagatctcaaaatcagaactacagtgtatctccactagaaactaaatgtcagtaccatgctgttttggttactacagctttagtagtagtatagcttaaagctgtagtaaccaaaacagcatggtactgacataaaaactcatacatagtcaaatggaagagaatgagggacccagaatttaatccacatatccacagccaacagatttctgacaaagatgtcaggaatactcactggagaaaggacagtctcttcaacaaatggtgctggggaaactggatatccatatgcagaagaatgaaactagacccccacctctcaccctatacaaaaatcaactcaaaatgggtc i panTro5.chr4 C 0 C 0 s panPan2.chr4 120993803 4369 - 195804263 aagtcctgagtgacctacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaatattagacagatcaatgagacagaatgttaacaaggatatccaggacttgaactcagctctgcacctagtggacctaatagacatctacagaactctccaccccaaatcaatgaaacatacattcttctcagcaccacaccgcacttatgccaaaattgaccacatagttggaagtaaagcactcctcagcaaatgtaaaagaacagaaatcacaacaaactgtctctcagaccacagtgcaatcaaattataactcaggattaagaaactcactcgaaactgcacaactacatgctcctgaatgactactgggtacataacgaaatgaaggcaaaaataaagatgttctttgaaaccaatgagaacaaagatacaacataccagaatctctgggagacatttactgcagtgtgtacagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaatcgacacaccctaacatcacaatttaaagaactagagaagcaagagcaaacaaattcaaaactagcagaaggcaagaaataagtaagatcagagcagaactgaaagagatagagacataaaaaacctttcaaaaaaatcaatgaatccagatgctgttttttagaaaagatcaacaaaattgacagaccactatcaagactaacaaagaagaaaagagagaagaatcaaatagacgcaataaaaaatgataaaggggatattaccactgatgccacagaaatacaaactaccatc-agagaatactataaacacctctacacaaataaactagaaaatttagaagaaatggataaattcctcgacacatacaccctcccaagactaaaccagaaagaagttgaatttctgaatagaccaataacaggctctgaaattgaggcaataattaatagcctaccaaccaaaaaaagtccaggaccagatggattcacagctgaattctaccagaggtacaagaaggagttggtaccattccttctgaaactattccaatcaatagaaaaagagggaatcctccgtaactcattttatgaggccagcatcatcctgataccaaagccgggcagagacacaac-aaaaaagaaaattttagaccaatatccctgatgaacatcgatgcaaaaatcctcaataaaatagtggcaaactgaatccagcagcacatcaaaaagcttattcaccacaatcaagtcagcttcatcccttatatgcaaagctggttcaacatatgcaaatcagtaaacataatccatcacataaacagaaccaatgacaaaaaccacatgttcatctgaatagatgcagaaaaggccttcaacaaaattcaacagcccttcatgctaaaaactctcaaataaactaggtattgatggaatgtacctccaaataataagagctgtttataacaaacccccagccagtatcacaatgaatgggcaaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcagttaggcaagagaaagaaataaagggtattcaattaggaaatgaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctcagcccaaaatctcaagctgataagcaatttcagcaaagtctcacgatacaaaatcaatgtacaaaaatcagaagaactcctatacaccaataacagatgaacagagagccaaatcttgagtgaactcccattcacaattgctataaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaacgaaataaaggaggacacaaacaaatggaagaacattccatgctcatggatagaaagaagcaatatcgtgaaaacagctatactgcccaaggcaatttatagattgaatgccatccgcatcaagctaccaatgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccataaaagagaccgcattgccagacaatcctaagtaaaaagaacaaagctggaggcatcatactacctgacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagagatatagaccaatggaacagaacagagccctcagaaata-------acatctgcagccatttgatgtttgacaaaccttgcaaaaacaagaaatggggaaaggattcccta-ttaataaatgattctgggataactggctagccacatgtagaaaggtgaaaatggatcccttccttacactttatacaaaaattaattcaagatggattaaagacttacatgttagacctaaaaccataaaaaccccagaagaaaacctaggcattaccattcaggacatagtcatgtggaaggacttcatgactaaaacaccaaaagcaatagcaacaaaagccaaaatagacaaatgggatctaatcaaactaaagggcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcaatctacccatgtgactaagggctaatatccagaatctacaaagaaattaaacaaatttacag-aaaaaacaaccccatcaaaaagtgggcaacagttatgaacagacatttctcaaaagaagacatttatgcagccaacagacacgtgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggggatcattaaaaagtcaggaaacaacagatgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagacaatgtggtgattcctcaaggatctagaactagaaataccatttgatccagccatcccattactgggtatatacccaaaggattataaatcatgctactataaagacacatgcacacgtatgtttattacagcactattcacaatagcaaagacttggaaccaacccaatgtccatcaatgatagacaggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaaggatagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctgagcaaacaatcataaggacagaaaaccaaacactgcacgttcttactcacaggtgggaattgaacaatgagaacatttggacacagggtggggaacatcacacaccggggcctgtcatggggtagggggttgggggagggatagcgttaggagaaatacctaacgtaaatgacaagttgatgggtgcagcaaaccaacacggcacatgtataccaatgtaacaaacctgcacgttgtgcacatgtaccctataacttaaagtataataaaaaaagaaaaccctaaagactctacaaataaaaatattagaacaagtaaacaaattcagtgaagttgcaggat-aaaaaaatcaacataacaaaaatcaatagcatttctatacactaacaacaaactactccccaaaaaatcatgaaaatgatcttgtttatgatagcaactcaaaaaataagatacttaggaataaatttcaccaagggagtgaaagatctgtactctgaaaactataaaacattgatgaacaaaattgaaaaagacaaacataaatgaaaagatattccatgttcatggattggaataattaatatggttaaaatgaccataaaaaacccgaatagcaaagccatcacaagcaaaaagaataaagccaaaggtaccataccaccagatctcaaaatcagaactacagtgtatctccactagaaactaaatgtcagtaccatgctgttttggttactacagctttagtagtagtatagcttaaagctgtagtaaccaaaacagcatggtactgacataaaaactcatacatagtcaaatggaagagaatgagggacccagaatttaatccacatatccacagccaacagatttctgacaaagatgtcaggaatactcactggagaaaggacagtctcttcaacaaatggtgctggggaaactggatatccatatgcagaagaatgaaactagacccccacctctcaccctatacaaaaatcaactcaaaatgggtc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4424922 4377 - 17550833 aagccctgagtgacctacaaagagacttagactcccacacaataataatgggagactttaacaccccattgtcaatattagacagatcaatgagacagaaggttaacaaggatatccaggacttgaactcagctctgcacctagcggacctaatagacatctacagaactctcctccccaaatcaatgaaacatacattcttctcagcaccacaccgcacttatgccaaaattgaccacatagtt-caagtaaagcactcctcagcaaatgtaaaagaacagaaatcacaacaaactgtctctcagaccacagtgcaatcaaattataactcaggattaagaaactcactcgaaactgcacaactacatgctcctgaatgactactgggtacataacgaaatgaaggcaaaaataaagatgttctttgaaaccaatgagaacaaagatacaacataccagaatctctgggagacatttactgcagtgtgtacagggaaatttatagcactaaatgcccacaagacaaagcaggaaagatctaaaatcgacacaccctaacatcacaatttaaagaactagagaagcaagagcaaacaaattcaaaactagcagaaggcaagaaataagtaagatcagagcagaactgaaagagatagagacataaaaaacctttcaaaaaaatcaatgaatccagatgctgtttttttgaaaagatcaacaaaattgacagaccactatcaagactaacaaagaagaaaagagagaagaatcaaatagacgcaataaaaaatgataaaggggatatcaccactgatgccacagaaatacaaactaccatcaagagaatactgtaaacacctctatgcaaataaactagaaaatttagaagaaatggataaattcctcgacacatacaccctcccaagactaaaccagaaagaagttgaatttctgaatagaccaataacaggctctgaaattgaggcaataattaatagcctaccaaccaaaaaaagtccaggaccagatggattcacagctgaattctaccagaggtacaaggaggagttggtaccattccttctgaaactattccaatcaacagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgataccaaagcctggcagagacacaacaaaaaaagaaaattttagaccaatatccctgatgaacatcgatgcaaaaatcctcaataaaatactggcaaactgaatccagcagcacatcaaaaagcttattcaccgcaatcaagtcagcttcatcccttatatgcaaagctggttcaacatatgcaaatcaatacaaataatccatcacataaacagaaccaacgacaaaaaccacatgttcatctgaatagatgcagaaaaggtcttcaacaaaattcaacagcccttcatgctaaaaactctc-aataaactaggtattgatggaatgtatctccaaataataagagctgtttatgacaaacccccagccagtatcacaatgaatgggcaaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgtttgaagttctggccagggcagttaggcaagagaaagaaataaagggtattcaattaggaaatgaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctcagcccaaaatctcaagctgataagcaatttcagcgaagtctcaggatacaaaatcaatgtacaaaaatcagaagaactcctatacaccaataacagatgaatagagagccaaatcttgagtgaactcccattcacaattgctacaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaacgaaataaaggaggacacaaacaaatggaagaacattccatgctcatggatagaaagaatcaatatcataaaaacggctatactgcccaaggcaatttatagattgaatgccatcaccatcaagctaccaatgactttcttcacagaattggaaaaaactactttgaagttcatatggaaccaaaaaagagactgcattgccagacaatcctaagtaaaaagaacaaagctggaggcatcacgctacctgacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagagatatagaccaatggaacagaacagagccctcagaaataacaccacacatctgcagccatttgatgtttgacaaaccttacaaaaacaagaaaaggggaaaggattccctatttaataaatggttctgggataactggctagccacatgtagaaaggtgaaactggatcccttccttacactttatacaaaaattaattcaagacggattaaagacttacatgttagacctaaaaccataaaaaccccagaagaaaacctaggcaataccattcaggacatagtcatgtggaaggacttcatgactaaaacaccaaaagcaatagcaacaaaagccaaaatagacaaatgggatctaatcaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggaggaaatttttgcaatatacccatgtgactaagggctaatatccagaatctacaaagaaattaaacaaatttacagaaaaaaacaaccccatcaacaagtgggcaacggatatgaacagacatttctcaaaagaagacagttatgcagccaacagacacgtgaaaaaaagctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggtgatcattaaaaagtcaggaaacaacagatgctggagaggatgtggagaaataggaaagcttttacactgttggtgggagtgtaaacaagttcaaccattgtggaagagaatgtggcgattcctcaaggatctagaactacaaataccatttgatccagccatcccattactgggtatatacccaaaggattataaatcatgctactataaagacacatgcacacgtatgtttattacagcactattcacagtagcaaagacttggaaccaacccaatgtccatcaatgatagacaggattaagaaaatgtggcacatatacaccacggaatactatgcagccataaaaaaggatagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctgagcaaacaatcataaggacagaaaaccaaacactgcatgttcttactcataggtgggaattgaacaatgagaacacttggacacagggtgggaaacatcacacactggggcctgtcatggggtagggggttgggggagggatagtgttaggagaaatacctaacgtaaatgacgagttgatgggtgtagcaaaccaacacggcacatgtatacctatgtaacaaacctgcacgttgtgcacatgtaccctataacttaaagtataataaaaaaagaaaaccct-aagactctacaaataaaaatattagaacaagtaaacaaattcagtgaagttgcaggat-aaaaaaatcaacataacaaaaatcagtagcatttctatacactaacaacaaactaccccccaaaaaatcatgaaaatgatcttgtttatgatagcaactcaaaaaataagatacttaggaataaatttcaccaagggagtgaaagatctgtactctgaaaactataaaacattgatgaacaaaattgaaaaagacaaacataaatgaaaagatattccatgttcatggattggaataattaatatggttaaaatgaccataaaaaacccgaatagcaaagccatcacaagcaaaaagaataaagccaaaggtaccataccatcagatctcaaaatcagaactacagtgtatctccactagaaactaaatgtcagtaccatgctgttttgtttactatagctttagtagtagtatagcttaaagctgtagtaaccaaaacagcatggtactggcataaaaactcatacatagtcaaatggaagagaatgaaggatccagaatttaatccacatatccacagccaacagatttctgacaaagatgtcaagaatactcactggagaaaggacaatctcttcaacaaatggtgctgggaaaactggatatccatatgcagaagaatgaaactagacccccacctctcaccctatacaaaaatcaactcaaaatgggtc i gorGor5.CYUI01014963v1 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e nomLeu3.chr9 69301653 462 - 118206036 I e colAng1.NW_012119221v1 1246657 1076 + 1448899 I e manLeu1.NW_012104388v1 1960450 0 + 2427316 C e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I e cerAty1.NW_012001307v1 4145210 0 - 5137665 C e macNem1.NW_012012466v1 13242863 3101 + 26754465 I e rheMac8.chr5 111506946 0 - 190429646 C e macFas5.chr5 110675076 0 - 189454096 C a score=36336.000000 s hg38.chr4_KI270787v1_alt 19594 42 + 111943 aaaggcctaaat-gaagaagaaaaacaataaagcgactagaag s panTro5.chr4 119581889 42 - 194502333 aaaggcctaaat-gaagaagaaaaacaataaagtgactagaag i panTro5.chr4 C 0 C 0 s panPan2.chr4 120998172 42 - 195804263 aaaggcctaaat-gaagaagaaaaacaataaagcgactagaag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4429299 42 - 17550833 aaaggcctaaat-gaagaagaaaaacaataaagcgactagaag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69302115 43 - 118206036 aaaggcctaaatggaagaacaaaaacaataaagcgactagaag i nomLeu3.chr9 I 462 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e colAng1.NW_012119221v1 1246657 1076 + 1448899 I e manLeu1.NW_012104388v1 1960450 0 + 2427316 C e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I e cerAty1.NW_012001307v1 4145210 0 - 5137665 C e macNem1.NW_012012466v1 13242863 3101 + 26754465 I e rheMac8.chr5 111506946 0 - 190429646 C e macFas5.chr5 110675076 0 - 189454096 C a score=14318.000000 s hg38.chr4_KI270787v1_alt 19636 5 + 111943 aaaac s panTro5.chr4 119581931 5 - 194502333 aaaac i panTro5.chr4 C 0 C 0 s panPan2.chr4 120998214 5 - 195804263 aaaac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4429341 5 - 17550833 aaaac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69302158 5 - 118206036 aaaac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111506946 5 - 190429646 aaagc i rheMac8.chr5 C 0 C 0 s cerAty1.NW_012001307v1 4145210 5 - 5137665 aaagc i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 1960450 5 + 2427316 aaagc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1247733 5 + 1448899 aaagc i colAng1.NW_012119221v1 I 1076 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I e macNem1.NW_012012466v1 13242863 3101 + 26754465 I e macFas5.chr5 110675076 0 - 189454096 C a score=1509195.000000 s hg38.chr4_KI270787v1_alt 19641 385 + 111943 acagagaagatgcttcacagcaatggtctgggaaagattttatgaataagacctcaaaagcacaggcgtcaataggaaaaataaacaaatgggattatatcaaactaaaaaacttctgcacagcaaaggaaatatcaacagtgaaaaggcaacctacagaataggagaaaacatttaaaaattactcatctgacaggggattaatatccagaatatacaaggaacggaaccatctcaacagcaaaacaaaaatctgtttttaaaatgggcagatgatttgcacagacgtttctcaaagggagacatgcaaacagctaacaaacatatgaaaaaatgctcaatatcattaatcatcagggaaatgcaaatcaaaaccacagtgagg s panTro5.chr4 119581936 385 - 194502333 acagagaaaatgcttcacagcaatggtctgggaaagattttatgaataagacctcaaaagcacaggcgtcaataggaaaaataaacaaatgggattatatcaaactaaaaaacttctgcacagcaaaggaaatatcaacagtgaaaagacaacctacagaataggagaaaacattttaaaattactcatctgacaggggattaatatccagaatatacaaggaacggaaccatctcaacagcaaaacaaaaatctgtttttaaaatgggcagatgatttgcacagacgtttctcaaagggagacatgcaaacagctaacaaacatgtgaaaaaatgctcaatatcattaatcatcagggaaatgcaaatcaaaaccacagtgagg i panTro5.chr4 C 0 C 0 s panPan2.chr4 120998219 385 - 195804263 acagagaaaatgcttcacagcaatggtctgggaaagattttatgaataagacctcaaaagcacaggcgtcaataggaaaaataaacaaatgggattatatcaaactaaaaaacttctgcacagcaaaggaaatatcaacagtgaaaagacaacctacagaataggagaaaacatttaaaaattactcatctgacaggggattaatatccagaatatacaaggaacggaaccatctcaacagcaaaacaaaaatctgtttttaaaatgggcagatgatttgcacagacgtttctcaaagggagacatgcaaacagctaacaaacatgtgaaaaaatgctcaatatcattaatcatcagggaaatgcaaatcaaaaccacagtgagg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4429346 385 - 17550833 acagagaaaatgcttcacagcaatggtctggcaaagattttatgaataagacctcaaaagcacagtcgtcaatatgaaaaataaacaaatgggattatatcaaactaaaaaacttctgcacagcaaaggaaatatcaacagtgaaaagacaacctacagaataggagaaaacatttaaaaattactcatctgacaggggattaatatccagaatatacaaggaacggaaccatctcaacagcaaaacaaaaatctgtttttaaaatgggcagatgatttgcacagacatttctcaaaaggagacacgcaaacagctaacaaacatatgaaaaaatgctcaatatcattaatcatcagggaaatgcaaatcaaaaccacaatgagg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69302163 385 - 118206036 acagggaaaatgcttcagaacaatgtcctgggaaagattttatgaatgagacctcaaaagcacaggaaccaataggaaaaataaacaaatgggattatatcaaactaaaaaacttctgcacagcaaaggaaatatcaacaatgaaaagacaacctacagaatgggagaaaacattcaaaatttactcatctgacaggggattaatatccagaatacacaaggaacggaaccgtctcaacagcaaaacaaaaatctgtttttaaaatgggcagatgatttgcacagacgtttctcaaaagaagacatgcaaacagctaacaaacatatgaaaaaatactcaatatcattaatcatcagggaaatgcaaatcaaaaccacagtgagg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111506951 383 - 190429646 acagggaaaatgcttcagaacaatgatctgggaaagattttttgaataagacctcaaaagcacaggcatcaataggaaaaataaacaaatgggattatatcaaactaaaaaat-tctgcacagcaaaggaaatatcaacagtgaaaacacaacctagagaatgggagaaaacattcaaaaattact-atctgacaggggattaatatccagaatatacaaggaatggaaccatctcaacagtaaaacaaaaatctgtttttaaaatgggcagatgatttgcacagacatttcccaaaagaagacatgcaaacagctaacaaatatatgaaaaaatgctcaatatcattaatcatcagggaaatgcaaatcaaaaccacagtgagg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110675076 383 - 189454096 acagggaaaatgcttcagaacaatgatctgggaaagattttttgaataagacctcaaaagcacaggcatcaataggaaaaataaacaaatgggattatatcaaactaaaaaac-tctgcacagcaaaggaaatatcaacagtgaaaacacaacctagagaatgggagaaaacattcaaaaattact-atctgacaggggattaatatccagaatatacaaggaatggaaccatctcaacagtaaaacaaaaatctgtttttaaaatgggcagatgatttgcacagacatttcccaaaagaagacatgcaaacagctaacaaatatatgaaaaaatgctcaatatcattaatcatcagggaaatgcaaatcaaaaccacagtgagg i macFas5.chr5 C 0 C 0 s cerAty1.NW_012001307v1 4145215 383 - 5137665 acagggaaaatgcttcagaacaatgatcagggaaagattttttgaataagacctcaaaagcacaggcatcaataggaaaaataaacaaatgggattatatcaaactaaaaaac-tctgcacagcaaaggaaatatcaacagtgaaaacacaacctagagaatgggagaaaacattcaaaaattact-atctgacaggggattaatatccagaatatacaaggaatggaaccatctcaacagtaaaacaaaaatctgtttttaaaatgggcagatgatttgcacagacatttcccaaaagaagacatgcaaacagctaacaaatatatgaaaaaatgctcaatatcattaatcatcagggaaatgcaaatcaaaaccacagtgagg i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 1960455 383 + 2427316 acagggaaaatgcttcagaacaatgatcagggaaagattttttgaataagacctcaaaagcacaggcatcaataggaaaaataaacaaatgggattatatcaaactaaaaaac-tctgcacagcaaaggaaatatcaacagtgaaaacacaacctagagaatgggagaaaacattcaaaaattact-atctgacaggggattaatatccagaatatacaaggaatggaaccatctcaacagtaaaacaaaaatctgtttttaaaatgggcagatgatttgcacagacatttcccaaaagaagacatgcaaacagctaacaaatatatgaaaaaatgctcaatatcattaatcatcagggaaatgcaaatcaaaaccacagtgagg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1247738 384 + 1448899 acagggaaaatgcttcagaacaatggtctgggaaagattttttgaataagacctcaaaagcacaggcatcaataggaaaaataaacaaatgggattatatcaaactaaaaaac-tctgcacagcaaaggaaatatcaacagtgaaaacacaacctagagaatgggagaaaacattcaaaaattactcatctgacaggggattaatatccagaatatacaaggaatggaaccatctcaacagtaaaacaaaaatctgtttttaaaatgggcagatgatttgcacagacatttctcaaaagaagacatgcaaacagctaacaaacatatgaaaaaatgctcaatatcattaatcatcagggaaatgcaaatcaaaaccacagtgagg i colAng1.NW_012119221v1 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52981829 1611 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I e macNem1.NW_012012466v1 13242863 3101 + 26754465 I a score=3525012.000000 s hg38.chr4_KI270787v1_alt 20026 797 + 111943 tataatctc--actccatttagcatggctattatcaaa----aggataaaaaaagatgctgatgaggatgcagagaaaagggaac-ttttatacaccgttgatgggaatgt-aaactagtacagctactatggagaacagtatggaggtttctcaaaaaactacaaacagaactaccgtatgatccagcaagccacgactgggaatttatccaaaggaaaggaaatcattatattgaaggaacatttgta-ccctatatttattgcagcactattttcaacagccaagagatggaatcaacatcagtatccagcaacagatgaatggatttttaaaagtagtatatataca-ccgtggaatactatttagccataaaacagaatgaaatccttttatttgtggcaacatggatggaattggaggacactatctcaagttaaacaagcaaagaacagaaagttaagcactgcaggttctcacttggaagtggaaacaaaaacattgatctcatagaagtaaaaagtaggac--agggtagtagaggctcaaaaaggtaagggaaaggaggggataattgggagagatatgttagaggatccaaaattatag-----------ctagataggagacaaaagtgttctataccactgtagaattattgcagttaacaataatatg-ttatatagtttcaaatagctagaaggaggatattaaatcttcacaacacaaataaatgataaatgtttgagatgatagatatgctaattaccctaataga------atacattatgctgaaacatcactatgtactccatgaat s panTro5.chr4 119582321 797 - 194502333 tataatctc--actccatttagcatggctattatcaaa----aggataaaaaaagatgctgatgaggatgcagagaaaagggaac-ttttatacaccgttgatgggaatgt-aaactagtacagctactatggagaacagtatggaggtttctcaaaaaactacaaacagaactaccatatgatccagcaagccacgactgggaatttatccaaaggaaaggaaatcattatattgaaggaacatctgta-ccctatatttattgcagcactattttcaacagccaagagatggaatcaacatcagtatccagcaacagatgaatggatttttaaaagtagtatatataca-ccatggaatactacttagccataaaacagaatgaaatccttttatttgtggcaacatggatggaattggaggacactatctcaagttaaataagcaaagaacagaaagttaagcactgcaggttctcacttggaagtggaaacaaaaacattgatctcatagaagtaaaaagtaggac--aggatagtagaggctcaaaaaggtaagggaaaggaggggataattgggagagatatgttagaggatccaaaattatag-----------ctagataggagacaaaagtgttctataccactgtagaattactgcagttaacaataatatg-ttatatagtttcaaatagctagaaggaggatattaaatcttcacaacacaaataaatgataaatgtttgagatgatagatatgctaattaccctaataga------atacattatgctgaaacatcactatgtactgcatgaat i panTro5.chr4 C 0 C 0 s panPan2.chr4 120998604 797 - 195804263 tataatctc--actccatttagcatggctattatcaaa----aggataaaaaaagatgctgatgaggatgcagagaaaagggaac-ttttatacaccgttgatgggaatgt-aaactagtacagctactatggagaacagtatggaggtttctcaaaaaactacaaacagaactaccatatgatccagcaagccacgactgggaatttatccaaaggaaaggaaatcattatattgaaggaacatctgta-ccctatatttattgcagcactattttcaacagccaagagatggaatcaacatcagtatccagcaacagatgaatggatttttaaaagtagtatatataca-ccatggaatactacttagccataaaacagaatgaaatccttttatttgtggcaacatggatggaattggaggacactatctcaagttaaataagcaaagaacagaaagttaagcactgcaggttctcacttggaagtggaaacaaaaacattgatctcatagaagtaaaaagtaggac--aggatagtagaggctcaaaaaggtaagggaaaggaggggataattgggagagatatgttagaggatccaaaattatag-----------ctagataggagacaaaagtgttctataccactgtagaattactgcagttaacaataatatg-ttatatagtttcaaatagctagaaggaggatattaaatcttcacaacacaaataaatgataaatgtttgagatgatagatatgctaattaccctaataga------atacattatgctgaaacatcactatgtactccatgaat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4429731 798 - 17550833 tataatctc--actccatttagcatggctattatcaaa----gggataaaaaaagatgctgatgaggatgcagagaaaagggaac-ttttatacaccattgatgggaatgtaaaactagtacagctactatggagaacagtatggaggtttctcaaaaaactacaaacagaactaccatatgatccagcaagccacaactgggaatttatccaaaggaaaggaaatcattatattgaaggaacatctgta-tcctatatttattgcagcactattttcaacagccaagagatggaatcaacatcagtatccagcaacagatgaatggatttttaaaagtagtatatataca-ccatggaatactatttagccataaaacagaatgaaatccttttatttgtggcaacatggatggaattggaggacactatctcaagttaaataagcaaagaacagaaagttaagcactgcaggttctcacttggaagtggaaacaaaaacattgatctcatagaagtaaaaagtaggac--aggatagtagaggctcaaaaaggtaagggaaaggaggggataattgggagagatatgttagaggatccaaaattatag-----------ctagataggagacaaaagtgttctataccactgtagaattactgcagttaacaataatatg-ttatatagtttcaaatagctagaaggaggatattaaatcttcacaacacaaataaatgataaatgtttgagatgatagatatgctaattaccctaataga------atacattatgctgaaacatcactatgtactctatgaat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69302548 798 - 118206036 tataatctg--actccatttagcatggctattatcaaa----aagacaaaaaaagatgctgatgaggatgcagagaaaagggaac-ttttatacaccgttgatgggaatgt-aaactagtacagctactatggagaacagtatggaggtttctcagaaaactacaaacagaactaccatatgatccagcaagccacgactgggaatttatccaaaggaaaggaaatcattatgttgaagagacatttgtacccctctatttattgcagcactattttcaacagccaagatatggaatcaacatcagtatccagtaacagatgaatggatttttaaaagtagtacatataca-ccatggaatactatttagccataaaacagaatgaaatcctgttatctgtggcaacatggatggaattggaggacactatgttaagttaaataagcaaagaacagagagttaaacattgccggttctcacttggaagtggaaacaaaaacattgatctcatagaagtaaaaagtaggac--aggatactagaggctcaaaaaggtaggggaaaggaggggataattgggagagagatgttagaggatccaaaattatag-----------ctagatagtagaaataagtgttctataccactgtagaataactgcagttaacaataatatg-ttatatagtttcaaatagctagaaggaggatattaaatcttcacaacacaaataaatgataaatgtttgagatgatagatatgctaattaccctaattag------atacattatgctgaaacatcactatgtactccatgaat i nomLeu3.chr9 C 0 I 1 s rheMac8.chr5 111507334 796 - 190429646 tataatctc--actcaatttacgatggctattatcaaa----aagacaaaaaatgatgctgatgaggatgcagaaaaaagggaac-ttttatacaccattggtgggaatgt-aaactagtacagctactatgaagaacagtatggaggtttctcaaaaaactacaagcagaccaaccatatgatcctgcaagccatgactgggaatttatccaaaggaaaggaaatcattatattgaagagaaatctgtacccccatatttattgcagcactattctcaacagccaagatatggaatcaatatcactatccagcaacagatgaatggatttttaaaagtagtatat-------------atactatttagccataaaacagaatgaaatcctgttatttgtggcaacatggatggaactggaggacactatgttaagttaaataagcaaagaacagaaagttaaaccctgcaggttcttacttagatgtggaaacaaaaacattaatctcatagaagtaaaaagtaggac--aggatactagaggctcaaaagggtaggggaaaggaggggataattgggagagatatgttagaggatccaaaattatagaggatccaaaattatataggaga-aatagtgttctatgccactataggatgactgcagttaacaataatatg-ttatatagttttgaatagctagaaggaggatactaaatctttccaacacaaataaatgataaatatttgagatgatagatgtgctaattaccctaattgg------atacattatcctgaaacatcactatgtactccatgaat i rheMac8.chr5 C 0 I 10 s macFas5.chr5 110675459 796 - 189454096 tataatctc--actcaatttacgatggctattatcaaa----aagacaaaaaatgatgctgatgaggatgcagaaaaaagggaac-ttttatacaccattggtgggaatgt-aaactagtacagctactatgaagaacagtatggaggtttctcaaaaaactacaagcagaccaaccatatgatcctgcaagccatgactgggaatttatccaaaggaaaggaaatcattatattgaagagaaatctgtacccccatatttattgcagcactattctcaacagccaagatatggaatcaatatcactatccagcaacagatgaatggatttttaaaagtagtatgt-------------atactatttagccataaaacagaatgaaatcctgttatttgtggcaacatggatggaactggaggacactatgttaagttaaataagcaaagaacagaaagttaaaccctgcaggttcttacttagatgtggaaacaaaaacattaatctcatagaagtaaaaagtaggac--aggatactagaggctcaaaagggtaggggaaaggaggggataattgggagagatatgttagaggatccaaaattatagaggatccaaaattatataggaga-aatagtgttctatgccactataggatgactgcagttaacaataatatg-ttatatagttttgaatagctagaaggaggatactaaatctttccaacacaaataaatgataaatgtttgagatgatagatgtgctaattaccctaattgg------atacattatcctgaaacatcactatgtactccatgaat i macFas5.chr5 C 0 I 1 s cerAty1.NW_012001307v1 4145598 788 - 5137665 tataatctc--actcaatttacgatggctattatcaaa----aagacaaaaaatgatgctgatgaggatgcagaaaaaagggaac-ttttatacaccattggtgggaatgt-aaactagtacagctactatggagaacagtatggaggtttctcaaaaaaccacaagcagaccaaccatatgatcctgcaagccatgactgggaatttatccaaaggaaaggaaatcattatattgaagagaaatctgtacccccatatttattgcagcactattctcaacagccaagatatggaatcaatatcactatccagcaacagatgaatggatttttaaaagtagtatat-------------atactatttagccataaaacagaatgaaatcctgttatttgtggcaacatggatggaactggaggacactatgttaagttaaataagcaaagaacagaaagttaaaccctgcaggttcttacttagatgtggaaacaaaaacattaatctcatagaagtaaaaagtaggac--aggatactagaggctcaaaagggtaggggaaaggaggggataattgggagagatatgttagaggatccaaaattatagaggatccaaaattatataggaga-aatagtgttctatgccactataggatgactgcagttaacaataatatg-ttatatagttt--------tagaaggaggatactaaatctttccaacacaaataaatgataaatgtttgagatgatagatgtgctaattaccctaattgg------atacattatcctgaaacatcactatgtactccatgaat i cerAty1.NW_012001307v1 C 0 I 10 s manLeu1.NW_012104388v1 1960838 788 + 2427316 tataatctc--actcaatttacgatggctattatcaaa----aagacaaaaaatgatgctgatgaggatgcagaaaaaagggaac-ttttatacaccattggtgggaatgt-aaactagtacagctactatggagaacagtatggaggtttctcaaaaaactacaagcagaccaaccatatgatcctgcaagccatgactgggaatttatccaaaggaaaggaaatcattatattgaagagaaatctgtacccccatatttattgcagcactattctcaacagccaagatatggaatcaatatcactatccagcaacagatgaatggatttttaaaagtagtatat-------------atactatttagccataaaacagaatgaaatcctgttatttgtggcaacatggatggaactggaggacactatgttaagttaaataagcaaagaacagaaagttaaaccctgcaggttcttacttagatgtggaaacaaaaacattaatctcatagaagtaaaaagtaggac--aggatactagaggctcaaaagggtaggggaaaggaggggataattgggagagatatgttagaggatccaaaattatagaggatccaaaattatataggaga-aatagtgttctatgccactataggatgactgcagttaacaataatatg-ttatatagttt--------tagaaggaggatactaaatctttccaacacaaataaatgataaatgtttgagatgatagatgtgctaattaccctaattgg------atacattatcctgaaacatcactatgtactccatgaat i manLeu1.NW_012104388v1 C 0 I 10 s colAng1.NW_012119221v1 1248122 798 + 1448899 tataatctc--actcaatttaggatgactattatcgaa----aagacaaaaaacgatgctgatgaggatgcagaaaaaagggaactttttatacaccattggtgggaatgt-aaactagtacagctactatggagaacagtatggaggtttctcagaaaactacaagcagaccaaccatatgatccagcaatccaggactgggaatttatccaaaggaaaggaaatcattatattgaagagaaatctgtatccccatatttattgcagcattattctcaacagccaagatatggaatcaatatcactatccagtaacagatgaatggatttttaaaagtagtatatataca-ccatggaatactacttagccataaaaaagaatgaaatcctgttatctgtggcaacatggatggaattggaggacactatgttaagttaaatcagcaaagaacataaagttaaaccctgcaggttcttacttagatgtggaaacaaaaacattaatctcatagaagtaaaaagtaggac--aggatactagaggctcaaaagggtaggggaaaggaggggataattgggagagatatgttagaggatccaaaattatag-----------ctatatatgaga-aatagtgttctatgccactataggatgactgcagttaacaataatatg-ttttatagttttgaatagctagaaggaggatactaaatcttcccaacacaaataaatgataaatgtttaagatgatagatgtgctaattaccctaattgg------atacattatgctgaaacatcactatgtactccatgaat i colAng1.NW_012119221v1 C 0 I 10 s calJac3.chr3 52983440 807 - 190850796 tgtaacctcaaactcc-ttggGTGAAgcaattatcaaaaaacaaaacaaaacaaagtgctgatgaggatgcaaagaaaagggaac-tcttatataccattggtgggaatgt-aaactggtatagctactatggagaacagtatggaggtttctcaaaaaattataaacagaactactatatgatccagcaagccacaactgggaatttatccaaaggaaaggaagtcactatattgaagagacatctgtacccccatatttattgcagcactattctcaacagccaagatatgaaatcaatatcactgtccagcaacagatgaatggatttttaaaagtactatatatacacccatggaatactatttagccataaa--agaatgaaatcctgttatttatggcaacatggatggaattggaggacactatgttaagttaaataagcaaggaacagaaagttaaacactgcaggttctcacttggatatggaaacaaaaacatttatctcttagaagtaaaaagtaggacagagaattctaaaggctggaaagggta-gggaaatgaggggataattgagagagatttgttaaaggatccaaaattatag-----------ctatatagggaa-ataagtgttctataacactgtaggatgactgtaggtaacaataatatatttaaagagtttcaaatagctagaagtaggatattaaatcttcccaacacaagtaaatgataaatgtttgagatgatagata--ctaattaccctaattggattgctatacattatgctgtaatatcaccatttacctattgaat i calJac3.chr3 I 1611 I 1 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I e macNem1.NW_012012466v1 13242863 3101 + 26754465 I a score=9094.000000 s hg38.chr4_KI270787v1_alt 20823 8 + 111943 tggatggt s panTro5.chr4 119583118 8 - 194502333 tggatggt i panTro5.chr4 C 0 C 0 s panPan2.chr4 120999401 8 - 195804263 tggatggt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4430529 8 - 17550833 tggatggt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69303347 8 - 118206036 tgtatggt i nomLeu3.chr9 I 1 C 0 s macFas5.chr5 110676256 8 - 189454096 catatgat i macFas5.chr5 I 1 I 1 s calJac3.chr3 52984248 8 - 190850796 tgtacaat i calJac3.chr3 I 1 I 1 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e colAng1.NW_012119221v1 1248920 10 + 1448899 I e manLeu1.NW_012104388v1 1961626 10 + 2427316 I e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I e cerAty1.NW_012001307v1 4146386 10 - 5137665 I e macNem1.NW_012012466v1 13242863 3101 + 26754465 I e rheMac8.chr5 111508130 10 - 190429646 I a score=1176196.000000 s hg38.chr4_KI270787v1_alt 20831 258 + 111943 attatttgtcaattaaatagaaaTGAAACAATTTAAAAATGTATACAATTTTTAAAAattgctaaaatgtccatactgctcaaattaatatacagattcaatccaatttctatcaaaattccaacgacatttttacagaaatagaaaaaacaatcttaaaattcatatgaaaccacaaaagactctgaatagccaaagcagtcttgagcaaaaagaacagagggaggtatcacactacctgatttgaaaatctactac s panTro5.chr4 119583126 257 - 194502333 attatttgtcaattaaatagaaaTGAAACAACTTAAAAATGTATACAATTTTTAAAAattgctaaaatgtccatactgctcaaattaatatacagattcaatccaatttctatcaaaattccaacgacatttttacagaaatagaaaaaacaatcttaaaattcatatgaaa-cacaaaatactctgaatagccaaagcagtcttgagcaaaaagaacagagggaggtatcacactacctgatttgaaaatctactac i panTro5.chr4 C 0 C 0 s panPan2.chr4 120999409 257 - 195804263 attatttgtcaattaaatagaaaTGAAACAACTTAAAAATGTATACAATTTTTAAAAattgctaaaatgtccatactgctcaaattaatatacagattcaatccaatttctatcaaaattccaatgacatttttacagaaatagaaaaaacaatcttaaaattcatatgaaa-cacaaaatactctgaatagccaaagcagtcttgagcaaaaagaacagagggaggtatcacactacctgatttgaaaatctactac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4430537 254 - 17550833 a----ttgtcaattaaatagaaaTGAAACAATTTAAAAATGTATACAATTTTTAAAATttgctaaaatgtccatattgctcaaattaatatacagattcaatccaatttctatcaaaattccaatgacatttttacagaaatagaaaaaacaatcttaaaattcatatgaaaccacaaaagactctgaatagccaaagcagtcttgagcaaaaagaacagagggaggtatcacactacctgatttgaaaatctactac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69303355 258 - 118206036 attatttgtcaattaaatagaaaTGAAACAATTTAAAAATGTATACAATTTTTAAAAattcctaaaatgtccatactgctcaaattaatatacagattcaatccaatttctatcaaaattccaatgacatttttacagaaatagaaaaaacaatcctaaaattcatatgaaaccacaaaagactctgaatagccaaagcagtcttgagcaaaaagaacagagggaggtatcacactacctgatttgaaaatctactac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111508140 257 - 190429646 attatttgtcaattaaatagaaaTGAAACAATTTTAAAATGTCTACAATTTTTAAAAactgctaaaatgtccatattgctcaaattaatgcacagattcaatccaatttctatcaaaattccaatgacatttttacagaaatagaaaaaa-aattctaaaattcatatgaaactacaaaagactctgaacagccaaagcagtcttgagcaaaaagaacagagggaggtatcacaccacctgatttgaaaatctactac i rheMac8.chr5 I 10 I 1675 s macFas5.chr5 110676265 257 - 189454096 attatttgtcaattaaatagaaaTGAAACAATTTTAAAATGTCTACAATTTTTAAAAACtgctaaaatgtccatattgctcaaattaatacacagattcaatccaatttctatcaaaattccaatgacatttttacagaaatagaaaaaa-aatcctaaaattcatatgaaactacaaaagactctgaacagccaaagcagtcttgagcaaaaagaacagagggaggtatcacaccacctgatttgaaaatctactac i macFas5.chr5 I 1 C 0 s cerAty1.NW_012001307v1 4146396 257 - 5137665 attatttgtcaattaaatagaaaTGAAACAATTTTAAAATGTCTACAATTTTTAAAAactgctaaaatgtccatattgctcaaattaatacacagattcaatccaatttctatcaaaattccaatgacatttttacagaaatagaaaaaa-aatcctaaaattcatatgaaactacaaaagactctgaacagccaaagcagtcttgagcaaaaagaacagagggaggtatcacactacctgatttgaaaatctactac i cerAty1.NW_012001307v1 I 10 I 1677 s manLeu1.NW_012104388v1 1961636 257 + 2427316 attatttgtcaattaaatagaaaTGAAACAATTTTAAAATGTCTACAATTTTTAAAAactgctaaaatgtccatattgctcaaattaatacacagattcaatccaatttctatcaaaattccaatgacatttttacagaaatagaaaaaa-aatcctaaaattcatatgaaactacaaaagactctgaacagccaaagcagtcttgagcaaaaagaacagagggaggtatcacactacctgatttgaaaatctactac i manLeu1.NW_012104388v1 I 10 I 1678 s colAng1.NW_012119221v1 1248930 257 + 1448899 attatttgtcaattaaatagaaaTGAAACAATTTTAAAATGTCTACAATTTTTAAAAattgctaaaatgtccatactgctcagattaatacacagattcaatccaatttctatcaaaattccaatgacatttttacagaaatagaaaaaa-aatcctaaaattcatatgaaaccacaaaagactctgaatagccaaagcagtcttgagcaaaaagaacagagggaggtatcacactacctgatttgaaaatctactac i colAng1.NW_012119221v1 I 10 C 0 s calJac3.chr3 52984257 244 - 190850796 attatttgtcaattaaaTCGAAGTGAA--------AAAATGTATACAATTTTTACAAattgctgaaatatccatac-gctcaaatcaatatacagattctatgcaatttctatcaaaattccaagaatatttttatagaaatagaaaaa--aatcctaaaattcatacgaaaccacaaaagactctgaatagccaaagaagtcttgggcaaaaagaacagagggaggtatcacactacctg-catgaaaatctatt-- i calJac3.chr3 I 1 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I e macNem1.NW_012012466v1 13242863 3101 + 26754465 I a score=3279.000000 s hg38.chr4_KI270787v1_alt 21089 2 + 111943 ag s panTro5.chr4 119583383 2 - 194502333 ag i panTro5.chr4 C 0 C 0 s panPan2.chr4 120999666 2 - 195804263 ag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4430791 2 - 17550833 ag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69303613 2 - 118206036 ag i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110676522 2 - 189454096 gg i macFas5.chr5 C 0 I 1644 s colAng1.NW_012119221v1 1249187 2 + 1448899 ag i colAng1.NW_012119221v1 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52984501 0 - 190850796 C e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e manLeu1.NW_012104388v1 1961893 1678 + 2427316 I e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I e cerAty1.NW_012001307v1 4146653 1677 - 5137665 I e macNem1.NW_012012466v1 13242863 3101 + 26754465 I e rheMac8.chr5 111508397 1675 - 190429646 I a score=1054252.000000 s hg38.chr4_KI270787v1_alt 21091 583 + 111943 aattacaataaccaaaaaagcatggtactggcataaaaaaagtcacatgcaccaatggaatagaacaaagagcccagaaataaatccacacatttaaagtccattgattctcaacaaggatgtcatgaacacacaatgggaaaagaacactcttcaataaatg--gtgctttgaaaactggatattcatatacagaagaatggaattagatcatcacctcacaccatgt-aaaaaactcaatgcaaaatgaattaaagacttaaatgtaggacttgaaacttcaaacctcctagaagaaaacatagagggaaagctgcataacactggtctaggcaaagactttttgcatatgactccaaaagcatggcaacaaaagcaaaaatagacaaatgagattatatcaatctaaaaagcttctgtaccacaaaggaaacaatcagcagagtaaaaagagacaacctatagaatgggagaatatatttgcaaaccatatgtctgctaagaggataatatctaaatacatataatgaactcaaacaactcaatagtaagaaaacaaatagcccaattaaaaaatgggcaaag s panTro5.chr4 119583385 583 - 194502333 aattacaataaccaaaaaagcatggtactggcataaaaaaagtcacatgcaccaatggaatagaacaaagagcccagaaataaatccacacatttaaagtccattgattctcaacaaggatgtcatgaacacacaatgggaaaagaacactcttcaataaatg--gtgctttgaaaactggatattcatatacagaagaatggaattagatcatcacctcacaccatat-aaaaaactcaatgcaaaatgaattaaagacttaaatgtaggacttgaaacttcaaacctcctagaagaaaacatagagggaaagctgcataacactggtctaggcaaagactttttgcatatgactccaaaagcatggcaacaaaagcaaaaagagacaaatgagattatatcaatctaaaaagcttctgtaccacaaaggaaacaatcatcagagtaaaaagagacaacctatagaatgggagaatatatttgcaaaccgtatgtctgctaagaggttaatatctaaatacatataatgaactcaaacaactcaatagtaagaaaacaaatagcccaattaaaaaatgggcaaag i panTro5.chr4 C 0 C 0 s panPan2.chr4 120999668 583 - 195804263 aattacaataaccaaaaaagcatggtactggcataaaaaaagtcacatgcaccaatggaatagaacaaagagcccagaaataaatccacacatttaaagtccattgattctcaacaaggatgtcatgaacacacaatgggaaaagaacactcttcaataaatg--gtgctttgaaaactggatattcatatacagaagaatggaattagatcatcacctcacaccatat-aaaaaactcaatgcaaaatgaattaaagacttaaatgtaggacttgaaacttcaaacctcctagaagaaaacatagagggaaagctgcataacactggtctaggcaaagactttttgcatatgactccaaaagcatggcaacaaaagcaaaaatagacaaatgagattatatcaatctaaaaagcttctgtaccacaaaggaaacaatcatcagagtaaaaagagacaacctatagaatgggagaatatatttgcaaaccgtatgtctgctaagaggttaatatctaaatacatataatgaactcaaacaactcaatagtaagaaaacaaatagcccaattaaaaaatgggcaaag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4430793 580 - 17550833 aattacaataaccaaaaaagcatggtactggcataaaaaaagtcacatgcaccaatggaatagaacaaagagcccagaaataaatccacacatttaaagtccattgattctcaacaaggatgtcaagaacacacaatgggaaaagaacactcttcaataaatg--gtgctttgaaaactggatattcatatacagaagaatggaattagatcatcacctcacaccatat-aaaaaactcaatgcaaaatgaactaaagacttaaatgtaggacttgaaacttcaaa---cctagaagaaaacatagagggaaagctgcataacactggtctaggcaaagactttttgcatatgactccaaaagcatggcaacaaaagcaaaaatagacaaatgagattatatcaatctaaaaagcttctgtaccacaaaggaaacaatcatcagagtaaaaagagacaatctatagaatgggagaatatatttgcaaaccgtatgtctgctaagaggttaatatctaaatacatataatgaactcaaacaactcaatagtaagaaaacaaatagcccaattaaaaaatgggcaaag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69303615 583 - 118206036 aattacaataaccaaaaaagcatggtactggcataaaaaaagtcacatgcaccaatggaatagaataaagagcccagaaataaatccacatatttaaggtccattgattctcaacaaggatgtcatgaacacacaatgggaaaagaacactcttcaataaatg--gtgcttggaaaactggatattcatatacagaagaatggaattagatcatcacctcacaccatat-aaaaaactcaatgcaaaatgaattaaagacttaaatgtaggacttgaaacttcaaacctcctagaagaaaacatagagggaaagctgcataacactggtctaggcaaaggctttttgcatatgactccaaaagcatggcaacaaaagcaaaaatagacaaatgagattatatcaatctaaaaagcttctgtaccacaaaggaaacaatcaacagagtaaaaagagacaacctatagaatgggagaatatatttgcaaaccatatgtctgctaagaggttaatatctgaatatatataatgaactcaagcaactcaatagtaagaaaacaaatagcccaattaaaaaatgggcaaag i nomLeu3.chr9 C 0 C 0 s colAng1.NW_012119221v1 1249189 583 + 1448899 aattacaataaccaaaaaagcatggcactggcataaaaacagtcacatgcaccaacggaatagaataaagagcccagaaacaaatccacacatttaaggtccattgattctcaacaaggatgtcatgaacacacgatgggaaaagaacactcttcaataagcg--atgcttgggaaactggatattcatatgcagaataatggaattagatcatcacctcacaccacat-aaaacactcaatgcaaaatgacttaaagatttaaatgtaggacttgaaacttcaaacttcctagaagaaaacatagagggaaagctgcataacattggtctaggcaaacactttttgcatatgactccaaaagcatggcaacaaaagcaaaaatagacaaatgagattatatcaatctaaaaagcttccgcaccacaaaggaaacaattaacagagtaaaaagagacaacctattgaatgggagaatatatttgcaaatcatatgtctgatatgaggttaatatctaaacatatataaggaactcaaacaactcaatagtgagaaaacaaatagcccaactgaaaaatgggcaaag i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52984501 583 - 190850796 agtcatagtaaccaaaaaagcatagtactagcataataatagacacatacaccagtggaatagaataaagagcac--aaataaatccacacatttaaagtccgttgattctcagtgaggatgccatgaacacacaatgggaaaagaatagtcttcaataaatggtgtgcttggaaaactggatattcatacacagaagaatggaattagatcatcatctcatgccatataaaaaaactcaatgcaaaatgaattaaagacttaaaagtaggacttgaaactacaaaactcctagaagaaaacatagagggaaaggtgcatatcattggtctaggcaaagactttttgcatatgactccaaaagcatggcaacaaaagcaaaaatagacaaatgagattatatcaatctaaaaagcttctgtaccacaaaggaaacaatcatcag-gtaaaaagagacaacctatggaatgggagaatatatttgcaaaccatatatgtgctaagaggttaatatctaaatatatataaggaactcaaacaactcaatagtaagaaaacaaacagcccaatttaaaaatgggcaaag i calJac3.chr3 C 0 I 1292 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e manLeu1.NW_012104388v1 1961893 1678 + 2427316 I e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I e cerAty1.NW_012001307v1 4146653 1677 - 5137665 I e macNem1.NW_012012466v1 13242863 3101 + 26754465 I e rheMac8.chr5 111508397 1675 - 190429646 I e macFas5.chr5 110676524 1644 - 189454096 I a score=1032448.000000 s hg38.chr4_KI270787v1_alt 21674 782 + 111943 gacctgaatagacatttctcaaaagaagacatacatattgtataacatgacgactacagttaacaaaatattgtattcttgaaaaatgct--gagagtggatataaaatgttctcaccacagaaataggaatgcttttacac----tgtgagagtgtaaattagttcaaccattgtggaagacggtgtggcaattcctcaaggatctagaacaaaaaataccatttgacccagcaatccccttactgggtatatacccaaagaattataaatcatgctactataaagacacatgcacacgtatgtttattgcatcactattcacaatagcaaagacttggaaccaacccaaatgcccatcaatgatagactgtataaagaaaatgtggcacatatgcacatggaatactatgcagccataaaaggagtgagttcatgccctttgcagagacatggatgaagctggaagccatcattctcagcaaactaacacaggaacagaaaaccaaacactgcgtgttctcactaataagtgggagtaaaacaaggaggacacatggacacatagagggtaacatcacacaccggggcctgccaagggggtggggggcaaggggagggaaagcattacaacaaatacctaatgcatgcagggcttaaaacctagatgatgggttgataggtacagcaaaccaccatggcacatgtatacctatgtagcaaacatgcacattctgcacatgtatcccagaacttaaagtaaaataaaaataaaaaaGATTTAGTTGT s panTro5.chr4 119583968 782 - 194502333 gacctgaatagacatttctcaaaagaagacatacatattgtataacatgacgactacagttaacaaaatattgtattcttgaaaaatgct--gagagtggatataaaatgttctcaccacagaaataggaatgcttttacac----tgtgagagtgtaaattagttcaaccattgtggaagatggtgtggcaattcctcaaggatctagaacaagaaataccatttgacccagcaatcccattactgggtatatacccaaagaattataaatcattctactataaagacacatgcacacgtatgtttattgcaccactattcacaatagcaaagacttggaaccaacccaaatgcccatcaatgatagactgtataaagaaaatgtggcacatatgcacatggaatactatgcagccataaaaggagtgagttcatgccctttgcagagacatggatgaagctggaagccatcattctcagcaaactaacacaggaacagaaaaccaaacactgcgtgttctcactaataagtgggagtagaacaaggaggacacatggacacatagagggtaacatcacacaccggggcctgccaagggggtggggggcaaggggagggaaagcgttacaacaaatacctaatgcatgcagggcttaaaacctagatgatgggttgataggtacagcaaaccaccatggcacatgtatacctatgtagcaaacatgcacattctgcacatgtatcccagaacttaaagtaaaataaaaataaaaaaGATTTAGTTGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121000251 780 - 195804263 gacctgaatagacatttctcaaaagaagacatacatattgtataacatgatgactacagttaacaaaatattgtattcttgaaaaatgct--gagagtggatataaaatgttctcaccacagaaataggaatgcttttacac----tgtgagagtgtaaattagttcaaccattgtggaagatggtgtggcaattcctcaaggatctagaacaagaaataccatttgacccagcaatcccattactgggtatatacccaaagaattataaatcattctactataa--acacatgcacacgtatgtttattgcatcactattcacaatagcaaagacttggaaccaacccaaatgcccatcaatgatagactgtataaagaaaatgtggcacatatgcacatggaatactatgcagccataaaaggagtgagttcatgccctttgcagagacatggatgaagctggaagccatcattctcagcaaactaacacaggaacagaaaaccaaacactgcgtgttctcactaataagtgggagtagaacaaggaggacacatggacacatagagggtaacatcacacaccggggcctgccaagggggtggggggcaaggggagggaaagcgttacaacaaatacctaatgcatgcagggcttaaaacctagatgatgggttgataggtacagcaaaccaccatggcacatgtatacctatgtagcaaacatgcacattctgcacatgtatcccagaacttaaagtaaaataaaaataaaaaaGATTTAGTTGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4431373 782 - 17550833 gatctgaatagacatttctcaaaagaacacatacatattgtataacatgacgactacagttaacaaaatattgtattcttgaaaaatgct--gagagtggatataaaatgttctcaccacagaaagaggaatgcttttacac----tgtgagagtgtaaattagttcaaccattgtggaagacggtgtggcaattcctcaaggatctagaacaagaaatactatttgacccagccattccattactgggtatatacccaaagaattataaatcattctactataaagccacatgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgcccatcaatgatagactgtataaagaaaatgtggcacatatgcacatggaatactatgcagccataaaaggagtgagttcataccctttgcagagacatggatgaagctggaagccatcattctcagcaaactaacagaggaacagaaaaccaaacactgcgtgttctcactaataagtgggagtagaacaaggaggacacatggacacatagagggtaacatcacacaccggggcctgccaagggggtggggggcaaggggagggaaagcattacaacaaatacctaatgcatgcagggcttaaaacctagatgatgggttgataggtatagcaaaccaccatggcacatgtatacctatgtagcaaacatgcacattatgcacatgtatcccagaacttaaagtaaaataaaaataaaaaaGATTTAGTTGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69304198 781 - 118206036 gacctgaatagacatttctcaaaagaagacatacatattgtataacatgacggctacagttaacaaaatattgtattcttgaaaaatgct--gagagtggatataaaatgttctcaccacagaaataggaatgcttttacac----tgtgagagtgtaaattagttcaaccattgtggaagatggtgtggcaattcctcaaggatctagaacaagaaacaccatttaacccagcaatcccattactgagtgtatacccaaagaattataaatcattctactataaagacacatgcacatgtatgtttattgcagcactattcacaatagcaaagacttggaaccaacccaaatgtccatcagtgataggctgtataaagaaaatgtggcacatatgcacatggaaaactatgcagccataaaaggagtgagttcatgccccttgcagaggcatggatgaagctggaagccaccattctcagcaaactaatacaggaacagaaaaccaaacactgcatgttctcactaataagtgggagtagaacaatgaggacacatggacatatagagggtaacatcacacaccggggcctgcc-agggggtggggggcaaggggagggaaagcattacaacaaatacctaatgcatgcagggcttaaaacctagatgatgggttgataggtacagcaaaccaccatggcacatgtatacctatgtagcaaacatgcacattctgcacatgtatcccagaacttaaagtaaaataaaaataaaaaaGATTTAGTTGT i nomLeu3.chr9 C 0 C 0 s colAng1.NW_012119221v1 1249772 785 + 1448899 gacctgaatcgacatttctcaaaagaagacaaacatactgtacaacatgacggctatagttaacaacatattgtgttcttgaaaaatgctaagagagtggatataaaatgttctcaccacagaaataggaatgcttttacactgtttgtgagagtgtaagttagttcaaccattgtggaagacagtgtggcaatttctcaaggatctagaaccagaaataccatttgacccagcaatcccatcacttggtatatacccaaaggatcataaatcattctactataaagatgcatgcacac--atgtttattgcagcactattcacaatagcaaagacttggaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggcacatatatgcatggaatactatgcagccataaaaagagtgagttcatgccctttgcagagacatggatgaagctggaagccatcattctcagcagactaacacaggaacagaaaaccaaacactgcatgttctcactaataaatgggagtagaacaatgaggacacatggacacatagaagggaacatcacacaccaggacctgcc-agggggtgggggacaagggaagggaaagcattacaacaaatccctaatgcacgcagggcttaaaacctagatgatgggttgatagatacagcaaaccaccatggcatatatatacctatgtaacaaacctgcacattctgcacatatatcccagaacttgaagtaaaataaaaataaaaaaGATTGAGTTGT i colAng1.NW_012119221v1 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52985084 1292 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e manLeu1.NW_012104388v1 1961893 1678 + 2427316 I e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I e cerAty1.NW_012001307v1 4146653 1677 - 5137665 I e macNem1.NW_012012466v1 13242863 3101 + 26754465 I e rheMac8.chr5 111508397 1675 - 190429646 I e macFas5.chr5 110676524 1644 - 189454096 I a score=258791.000000 s hg38.chr4_KI270787v1_alt 22456 298 + 111943 AAGAACGTCCgccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgagacgggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaaaagaaattagccgggcgtagtggcgggcgcctatagtcccagctactcgga-aggctgaggcaggagaatggtgtgaacccgggaggcggagcttgcggtgagccgagatcagcgccactgcactctagcctgggcgactgagcgagactccgtctc s panTro5.chr4 119584750 297 - 194502333 AAGAATGTCCgccaggcgcggtggctcacgcctgtaatcccagcgctttgggaggccgagacgggcggatcacgaggtctggaaatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatac-aaaaaaaagaaattagccgggcgtagtggcgagcgcctatagtcccagctactcgga-aggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagccgagatcagcaccactgcactccagcctgggcgactgagcgagactccgtctc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121001031 296 - 195804263 AAGAATGTCCgccgggcgcggtggctcacgcctgtaatcccagcgctttgggaggccgagacgggcggatcacgaggtctggaaatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatac--aaaaaaagaaattagccgggcgtagtggtgggcgcctatagtcccagctactcgga-aggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagccgagatcagcaccactgcactccagcctgggcgactgagcgagactccgtctc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4432155 297 - 17550833 AAGAATGTCTgccgggcgcgggggctcacgcctgtaatcccagcactttgggaggccgagacgggcagatcacgaggtcaggagatcgagaccatcttggctaacacggtgaaactccggctctactaaaaatac-aaaaaaaagaaattagccgggcgtagtggcgggcgcctatagtcccagctactcgga-aggctgaggtaggagaatggtgtgaacccgggaggcggagcttgcggtgagccgagatcagcgccactgcactctagcctgggcgactcagagagactccgtctc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69304979 296 - 118206036 AAGAATGTCCgccaggcgcggtggctcacgcctgtaatcccagcactttgggagaccgagacgggcggatcacgaagtcaggagatcgagactatcctggctaacaaggtggaaccccgtctctactaaaaatac--aaaaaaagaaattagccgggcgtggtggcgggcgcctatagtcccagctactcggagaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccaagatc-gcgccactgcactccagcctgagcgactgagcgagactccgtctc i nomLeu3.chr9 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52985084 1292 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e colAng1.NW_012119221v1 1250557 0 + 1448899 C e manLeu1.NW_012104388v1 1961893 1678 + 2427316 I e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I e cerAty1.NW_012001307v1 4146653 1677 - 5137665 I e macNem1.NW_012012466v1 13242863 3101 + 26754465 I e rheMac8.chr5 111508397 1675 - 190429646 I e macFas5.chr5 110676524 1644 - 189454096 I a score=182.000000 s hg38.chr4_KI270787v1_alt 22754 2 + 111943 aa s macFas5.chr5 110678168 2 - 189454096 aa i macFas5.chr5 I 1644 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e calJac3.chr3 52985084 1292 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e panTro5.chr4 119585047 0 - 194502333 C e nomLeu3.chr9 69305275 0 - 118206036 C e colAng1.NW_012119221v1 1250557 0 + 1448899 C e manLeu1.NW_012104388v1 1961893 1678 + 2427316 I e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I e cerAty1.NW_012001307v1 4146653 1677 - 5137665 I e macNem1.NW_012012466v1 13242863 3101 + 26754465 I e rheMac8.chr5 111508397 1675 - 190429646 I e gorGor5.CYUI01014963v1 4432452 0 - 17550833 C e panPan2.chr4 121001327 0 - 195804263 C a score=9243.000000 s hg38.chr4_KI270787v1_alt 22756 14 + 111943 aaaaaaaaaaaaaa-- s panTro5.chr4 119585047 13 - 194502333 -aaaaaaaaaaaaa-- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121001327 11 - 195804263 ---aaaaaaaaaaa-- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4432452 12 - 17550833 --aaaaaaaaaaaa-- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69305275 9 - 118206036 -----aaaaaaaaa-- i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110678170 14 - 189454096 ataaaaataaaaaa-- i macFas5.chr5 C 0 I 11 s calJac3.chr3 52986376 14 - 190850796 --aaaataaataaata i calJac3.chr3 I 1292 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9346835 3542 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8146393 3483 - 15139346 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e colAng1.NW_012119221v1 1250557 0 + 1448899 C e manLeu1.NW_012104388v1 1961893 1678 + 2427316 I e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I e cerAty1.NW_012001307v1 4146653 1677 - 5137665 I e macNem1.NW_012012466v1 13242863 3101 + 26754465 I e rheMac8.chr5 111508397 1675 - 190429646 I a score=1176196.000000 s hg38.chr4_KI270787v1_alt 22770 171 + 111943 aagaaTGTCCTATAAAT-TTTTTTATTATGAAAaaatgttatcaccacaaaaatgacagccatatgaggtaatgcatatgttaattagctagat----ttagtcattccacaatgtataaatacttcaaaatattatgttgtacaca--------atac--atacatacaattttatctgtcaatt s panTro5.chr4 119585060 179 - 194502333 aagaaTGTCCAATAAAT-TTTTTTATTATGAAAaaatattatcaccacaaaaatgacaaccatatgaggtaatgcatatgttaattagctagat----ttagtcattccacaatgtataaatacttcaaaacattatgttgtacacaatacatacatac--atacatacaattttatctgtcaatt i panTro5.chr4 C 0 I 6 s panPan2.chr4 121001338 178 - 195804263 aagaaTGTCCTATAAAT-TTTTTTATTATG-AAaaatattatcaccacaaaaatgacaaccatatgaggtaatgcatatgttaattagctagat----ttagtcattccacaatgtataaatacttcaaaacattatgttgtacacaatacatacatac--atacatacaattttatctgtcaatt i panPan2.chr4 C 0 I 6 s gorGor5.CYUI01014963v1 4432464 170 - 17550833 aaaaaaGTCCTATAAAT-TTTTTTATTATGAAAaaatgttatcaccacaaaaatgacagccatatgaggtaatgcatatgttaattagctagat----ttagtcattccacaatgtataaatacttcaaaatattatgttgtacaca--------atac--atacatacaa-tttatctgtcaatt i gorGor5.CYUI01014963v1 C 0 I 6 s nomLeu3.chr9 69305284 171 - 118206036 aaGCATGTCCTATAAAT-TTTTTTATTATGAAAaaatgttatcaccacaaaaatgacaaccatgtgaggtaatgcatatgttaattagctagat----ttagtcattccacaatgtataaatacttcaaaacgttatgttgtacaca--------atac--atacatacaattttatctgtcaatt i nomLeu3.chr9 C 0 I 6 s rheMac8.chr5 111510072 171 - 190429646 AAGAATGTCCTATAAAT-TTTTTTATTATGGAAaaatgttatcaccacaaaaatgacaaccatgcgaggtaatgcatatgttatttagatatat----ttagtcattccacaatgtatatatacttcaaaacattatgttgtacaca--------atac--acacatacaattttatctgtcaatt i rheMac8.chr5 I 1675 I 6 s macFas5.chr5 110678195 171 - 189454096 AAGAATGTCCTATAAAT-TTTTTTATTATGGAAaaatgttatcaccacaaaaatgacaaccatgcgaggtaatgcatatgttatttagatatat----ttagtcattccacaatgtatatatacttcaaaacattatgttgtacaca--------atac--acacatacaattttatctgtcaatt i macFas5.chr5 I 11 I 6 s macNem1.NW_012012466v1 13245964 171 + 26754465 aagaatgtcctataaat-ttttttattatggaaaaatgttatcaccacaaaaatgacaaccatgcaaggtaatgcatatgttatttagatatat----ttagtcattccacaatgtatatatacttcaaaacattatgttgtacaca--------atac--acacatacaattttatctgtcaatt i macNem1.NW_012012466v1 I 3101 I 6 s cerAty1.NW_012001307v1 4148330 171 - 5137665 aagaatgtcctataaat-ttttttattatggaaaaatgttatcaccacgaaaatgacaaccatgcgaggtaatgcatatgttatttagacatat----ttagtcattccacaatgtacatatacttcaaaacattatgttgtacaca--------atac--acacatacaattttatctgtcaatt i cerAty1.NW_012001307v1 I 1677 I 6 s manLeu1.NW_012104388v1 1963571 171 + 2427316 aagaatgtcctataaat-ttttttattatggaaaaatgttatcaccacgaaaatgacaaccatgcgaggtaatgcatatgttatttagacatat----ttagtcattccacaatgtacatatacttcaaaacattatgttgtacaca--------atac--acacatacaattttatctgtcaatt i manLeu1.NW_012104388v1 I 1678 I 6 s colAng1.NW_012119221v1 1250557 171 + 1448899 AAGAATGTCCTATAAAT-TTTTTTATTATGGAAaaatgttatcaccacaaaaatgacaaccatgtgaggtaatgcatatgttatttagatatat----ttagtcattccacaatgtaaatatacttcaaaacattatgttgtacaca--------atac--acacatacaattttatctgtcaatt i colAng1.NW_012119221v1 C 0 I 6 s calJac3.chr3 52986390 153 - 190850796 ----------aataaataaatttta----aaaaaaaagttctcaccacaaaaatgacaaccatgtgaggtaatgtatatgttagttagctagat----ttagtcattccacaatttatacatatttcaaaacatcatgttgtacaca--------atac--atatacataatt-----tgtcaatt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8149876 169 - 15139346 aagaatgtcctataaatattttttattttaaaaaaatgttctcactgcaaaaatgacaaccatgtgaggtaatgcatatgttaattagctagat----ttagtcattccacaatttatatatacttcaaaacatcatgttgtacaca--------atacatatatatataatt-----tgtcaatt i saiBol1.JH378162 I 3483 C 0 s aotNan1.NW_018493494v1 9350377 170 - 11631747 aagaatgtcctataaatattttttattataaaaaaa-gttctcaccacaaaaatgacaactatgtgaggtaatgcatatgttaattagctagatttagttagtcattccacaatttatatatacttcaaaacatcatgttgtacaca--------atac--atatatataatt-----tgtcaatt i aotNan1.NW_018493494v1 I 3542 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I e chlSab2.chr7_KE147969v1_random 50830 2943 - 60632 I a score=2276474.000000 s hg38.chr4_KI270787v1_alt 22941 282 + 111943 -t-----aaaaaGTAAAT-ATTTATTTTGGGGTATGATAAAGCAAATATCTTCAGTTACATGCTGTTACTGAAATTTAAGGACTATTATTGTTCAAGAACGATTTTTAAATTAAAATTCTTTATActcaaaaa-atgagggcat--aaatggttaataggtata--tttttttaatgttcaacatcactaatcatgagag-aatgcaaattaaaaccacaatggggtatcatctcacacctgttagaatggctactatcaaaaacatgaaagatatcacaagttggcaaggatg-t s panTro5.chr4 119585245 281 - 194502333 -t-----aaaAAGTAAAT-ATTTATTTTGGGGTATGATAAAGCAAATATCTTCAGTTACACGCTGTTACTGAAATTTAAGGACTATTATTGTTCAAGAACAATTTTTAAATTAAAATTCTTTATActcaaaaa-a--agggcat--aaatggttaataggtatat-tttttttaatgttcaacatcactaatcatgagag-aatgcaaattaaaaccacaatggggtatcatctcacacctgttagaatggctactatcaaaaacatgaaagataacacaagttggcaaggatg-t i panTro5.chr4 I 6 C 0 s panPan2.chr4 121001522 280 - 195804263 -t-----aaaAAGTAAAT-ATTTATTTTGGGGTATGATAAAGCAAATATCTTCAGTTACACGCTGTTACTGAAATTTAAGGACTATTATTGTTCAAGAACAATTTTTAAATTAAAATTCTTTATActcaaaaa-a--agggcat--aaatggttaataggtata--tttttttaatgttcaacatcactaatcatgagag-aatgcaaattaaaaccacaatggggtatcatctcacacctgttagaatggctactatcaaaaacatgaaagataacacaagttggcaaggatg-t i panPan2.chr4 I 6 C 0 s gorGor5.CYUI01014963v1 4432640 283 - 17550833 -t-----aaaAAGTAAAT-ATTTATTTTGGGGTATGATAAAGCAAATATCTTCAGTTACATGCTGTTCCTGAAATTTAAGGACTATTATTTTTCAAGAACAATTTTTAAATTAAAATTCTTTATActcaaaaa-aagagggcat--aaatggttaataggtacat-tttttttaatgttcaacatcactaatcgtgagag-aatgcaaattaaaaccacaatggggtatcatctcacacctgttagaatggctactatcaaaaacatgaaagataacacaagttggcaaggatg-t i gorGor5.CYUI01014963v1 I 6 C 0 s nomLeu3.chr9 69305461 277 - 118206036 -t-----aaaAAGTAAATAATTTATTTTGGGGTATGATAAAG----------CTGTTACATGCTGTTACTGAAATTTAAGGACTATTATTGTTCAAGAACAATTTTTAAATTAAAATTCTTTATActcaaaaa-aagagggcatacaaatggttaataggtatatatttttttaatgttcaacatcactaatcatgagag-aatgcaaattaaaaccacaatggggtatcatctcacacctgttagaatggctactatcaaaaacatgaaagctaacacaagttggcaaggatg-t i nomLeu3.chr9 I 6 C 0 s rheMac8.chr5 111510249 281 - 190429646 -t-----aaaAAGTAAAT-ATTTACTTTGGGGTATGATAAAGCAAATATCTTCAGTTACATGCTGTTACTGAAATTTAAGGACTATTATTTTTCAAGAACAATTTTTAAATTAAAATTCTTTCTActcaaaga-a-gaggacaaacaaatagttaataggtata--ttttttaaaagttcaacaccactaatcatgagag-aatgcaaattaaaaccacaatggggtaccatctcatacctgttagaatggctattatcaaaaacatgaaaaataacac--gttggcaaggatg-t i rheMac8.chr5 I 6 C 0 s macFas5.chr5 110678372 283 - 189454096 -t-----aaaAAGTAAAT-ATTTACTTTGGGGTATGATAAAGCAAATATCTTCAGTTACATGCTGTTACTGAAATTTAAGGACTATTATTTTTCAAGAACAATTTTTAAATTAAAATTCTTTCTActcaaaga-a-gaggacaaacaaatagttaataggtata--ttttttaaatgttcaacatcactaatcatgagag-aatgcaaattaaaaccacaatggggtaccatctcatacctgttagaatggctattatcaaaaacatgaaaaataacacatgttggcaaggatg-t i macFas5.chr5 I 6 C 0 s macNem1.NW_012012466v1 13246141 283 + 26754465 -T-----AAAAAGTAAAT-ATTTACTTTGGGGTATGATAAAGCAAATATCTTCAGTTACATGCTGTTACTGAAATTTAAGGACTATTATTTTTCAAGAACAATTTTTAAATTAAAATTCTTTCTActcaaaga-a-gaggacaaacaaatagttaataggtata--ttttttaaatgttcaacatcactaatcatgagag-aatgcaaattaaaaccacaatggggtaccatctcatacctgttagaatggctattatcaaaaacatgaaaaataacacatgttggcaaggatg-t i macNem1.NW_012012466v1 I 6 C 0 s cerAty1.NW_012001307v1 4148507 283 - 5137665 -T-----AAAAAGTAAAT-ATTTACTTTGGGGTATGATAAAGCAAATATCTTCAGTTACATGCTGTTACTGAAATTTAAGGACTATTATTTTTCAAGAACAATTTTTAAATTAAAATTCTTTCTActcaaaga-a-gaggacaaacaaatagttaataggtata--ttttttaaatgttcaacatcactaatcatgagag-aatgcaaattaaaaccacaatggggtaccatctcatacctgtcagaatggctattatcaaaaacatgaaaaataacacatgttggcaaggatg-t i cerAty1.NW_012001307v1 I 6 C 0 s chlSab2.chr7_KE147969v1_random 53773 283 - 60632 -t-----aaaAAGCAAAT-ATTTACTTTGGGGTATGATAAAGCAAATATCTTCAGTTACATGCTGTTACTGAAATTTAAGGACTATTATTTTTCAAGAACAATTTTTAAATTAAAATTCTTTCTActcaaaga-a-gaggacaaacaaatggttaataggtata--ttttttaaatgttcaacatcactaatcatgagag-aatgcaaattaaaaccacaatggggtaccatctcatacctgttagaatggctattatcaaaaacatgaaaaataacacgtgttggcaaggatg-t i chlSab2.chr7_KE147969v1_random I 2943 C 0 s manLeu1.NW_012104388v1 1963748 283 + 2427316 -T-----AAAAAGTAAAT-ATTTACTTTGGGGTATGATAAAGCAAATATCTTCAGTTACATGCTGTTACTGAAATTTAAGGACTATTATTTTTCAAGAACAATTTTTAAATTAAAATTCTTTCTActcaaaga-a-gaggacaaacaaatagttaataggtata--ttttttaaatgttcaacatcactaatcatgagag-aatgcaaattaaaaccacaatggggtaccatctcatacctgtcagaatggctattatcaaaaacatgaaaaataacacatgttggcaaggatg-t i manLeu1.NW_012104388v1 I 6 C 0 s colAng1.NW_012119221v1 1250734 280 + 1448899 -t-----aaaAAGTAAAT-ATTTACTTTGGGGTATGATAAAGCAAATATCTTCAGTTACATGCTGTTACTGAAATTTAAGGACTATTATTTTTCAAGAACAATTTTTAAATTAAAATTCTTTCTACTCAAaaa-a-gaggacaaacaaatggttaataggtata--ttttttaaatgttcaacatcactaatcatgagag-aatgcaaattaaaaccacaat---gtaccatctcatacctgttagaatggctattatcaaaaacatgaaaaataacacatgttggcaaggatg-t i colAng1.NW_012119221v1 I 6 C 0 s calJac3.chr3 52986543 283 - 190850796 ta-----aaagaaCAAAT-ATTTATTTTGGGGTATGATAAAGCAAATGTCTTCA-TAACATGCTGTTACTGAAATTTAAGGGCTATTATT-TTCAAGAACAATTTTTAAATTAAAATTCTTTCTACTAAAaaa-a-taagacatacaaatggttaataggaata--ttttttaaatgttcaacatcactaatcatcagagaaatgcaaattaaaaccacaatgggatattatctcacacctgttagaatggctattaacaaaaacacgaaagataacaaatgttggcacggatg-t i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8150045 269 - 15139346 ta-----aaaaaataaat-atttattttGGGGTATGATAAAGCAAATGTCTTCA-TAACATGCTGTTACTGAAATTTAAGGACTATTATT-TTCAAGAACAATTT-----TTAAAGTTCTTTCTACTAAAAAATA-Taagacatacaaatggttaataggaata--ttttaaaaatgttcaacatcactaatcatcagagaaatgcaaattaaaaccaca----------atctcacacctgttagaatggctattatcaaaaacacgaaagataacaaatgttggcaaggttg-c i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9350547 287 - 11631747 TAAAAATAAAAAATAAAT-ATTTATTTTGAGGTATGATAAAGCAAATGTTTTCA-TGACATGCTATTACTGAAATGTAAGGACT-TATTT-TTCAAGAACAATTTTTAAATTAAAATTCTTTCTAC-AAAaaa-a-taagacatacaaatggttaataggcata--tttttaaagtgttcaacatcgctaatcatcagagaaatgcaaattaaaaccacagtggggtattatctcacacctgttagaatggctattatcaaaaacacgaaagataacaaatgttggcaaggatgtt i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47947735 972 + 63241923 I a score=3546268.000000 s hg38.chr4_KI270787v1_alt 23223 398 + 111943 ggaaaaaag--ggaaccc-tgtacactcttggtggggatgtaagttagtacagccattatggaaaatagtatggaggttcctcaaaaaatt-aaaatataactagtatgtgattcagccatgccatttctgcatatatatccaaaggagatgaaatcagtatgtcaaagagatatgtgcactcccatgttcactgcagcattattcacaacagctaagacatgtaaacaacctaagtat--------ctatcagcagatgaatggataaagaaaatgtagtatatatacaaagtggaatact--attccgccttaaataagaaggaaatct--aatttgcgacaacatgggtgaacctggagaaca-----ttaagtgaaattacccagaca-caaaaagatttaaaaattgcatgatct s panTro5.chr4 119585526 398 - 194502333 ggataaaag--ggaaccc-tgtacactcttggtggggatttaagttagtacagccattatggaaaatagtatggaggttcctcaaaaaatt-aaaatagaactagtatgtgattcagccatgccatttctgcatatatatccaaaggagatgaaatcagtatgtcaaagagatatgtgcactcccatgttcactgcagcattattcacaacagctaagacatgtaaacaacctaagtat--------ctatcagcagatgaatggataaagaaaatgtagtatatatacaaagtggaatact--attccgccttaaataagaaggaaatct--aatttgcgacaacatgggtgaacctggagaaca-----ttaagtgaaattacccagaca-caaaaagatttaaaaattgcatgatct i panTro5.chr4 C 0 C 0 s panPan2.chr4 121001802 398 - 195804263 ggataaaag--ggaaccc-tgtacactcttggtggggatgtaagttagtacagccattatggaaaatagtatggaggttcctcaaaaaatt-aaaatagaactagtatgtgattcagccatgccatttctgcatatatatccaaaggagatgaaatcagtatgtcaaagagatatgtgcactcccatgttcactgcagcattattcacaacagctaagacatgtaaacaacctaagtat--------ctatcagcagatgaatggataaagaaaatgtagtatatatacaaagtggaatact--attccgccttaaataagaaggaaatct--aatttgcgacaacatgggtgaacctggagaaca-----ttaagtgaaattacccagaca-caaaaagatttaaaaattgcatgatct i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4432923 398 - 17550833 ggaaaaaag--ggaaccc-tgtacacttttggtggggatgtaagttagtacagccattatggaaaatagtatggaggttcctcaaaaaatt-aaaatagaactagtatgtgattcagccatgccatttctgcatatatatccaaaggagatgaaatcagtatgtcaaagagatatgtgcattcccatgttcactgcagcattattcacaacagctaagacatgtaaacaacctaagtat--------ctatcagcagatgaatggataaagaaaatgtagtatatatacaaagtagaatact--attccgccttaaataagaaggaaatct--aatttgcgacaacatgggtgaacttggagaaca-----ttaagtgaaattacccagaca-caaaaagatttaaaaattgcatgatct i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69305738 396 - 118206036 ggataaaag--cgaacccttggacactcttggtggggatgtaagttagtacaggcattatggaaaatagtatggaggttcctcaaaaagtt-aaaatagaactagtatgtgattcagccatgccatttctgcatatatatccaaaggagatgaaatcagtaggtcaaagagatatgtacactcccatgttcactgcagcattattcacaacagctaagacatgtaaacaacctaagtat--------ctatcagcagatgaatggataaagaaaat---gtatatatacaaagtggaatact--attcagccttaaataagaaggaaatct--catgtgcgacaacatggatgaacctggagaaca-----ttaagtgaaattacccagaca-caaaaagatttaaaaattgcatgatct i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111510530 399 - 190429646 ggagaaaag--ggaacccttgcacacttttggtggggatggaagttagtacagcctttatggaaaatagtatggagacgcctcaaaaaatt-aaaatagaactactatgtgattcagccatcccatttctgcatatatatccaaaggagatgaaatcggtaagtcaaagatatatgtgcactcccatgttcactgcagcaatattcacaatagctaagacatgtaaacaacccaagtat--------ctatcagcagatgaatggataaagaaaatgtagtgtatatacaaagtggactact--attcaatcttaaataaaaaggaaatct--catttgagccaacatggatgaacctggagaaca-----ttaagtggaattacccagaca-caaaaagatttaaaaattgtatgatct i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110678655 399 - 189454096 ggagaaaag--ggaacccttgcacacttttggtggggatggaagttagtacagcctttatggaaaatagtatggaggcgcctcaaaaaatt-aaaatagaactactatgtgattcagccatcccatttctgcatatatatccaaaggagatgaaatcggtaagtcaaagatatatgtgcactcccatgttcactgcagcaatattcacaatagctaagacatgtaaacaacccaagtat--------ctatcagcagatgaatggataaagaaaatgtagtgtatatacaaagtggaatact--attcaatcttaaataaaaaggaaatct--catttgagccaacatggatgaacctggagaaca-----ttaagtggaattacccagaca-caaaaagatttaaaaattgtatgatct i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13246424 399 + 26754465 ggagaaaag--ggaacccttgcacacttttggtggggatggaagttagtacagcctttatggaaaatagtatggaggcgcctcaaaaaatt-aaaatagaactactgtgtgattcagccatcccatttctgcatatatatccaaaggagatgaaatcggtaagtcaaagatatatgtgcactcccatgttcactgcagcaatattcacaatagctaagacatgtaaacaacccaagtat--------ctatcagcagatgaatggataaagaaaatgtagtgtatatacaaagtggaatact--attcaatcttaaataaaaaggaaatct--catttgagccaacatggatgaacctggagaaca-----ttaagtggaattacccagaca-caaaaagatttaaaaattgtatgatct i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4148790 399 - 5137665 ggagaaaag--ggaacccttgcacacttttggtggggatagaagttagtacagcctttatggaaaatagtatggaggcgcctcaaaatatt-aaaatagaactactatgtgattcagccatcccatttctgcatatatatccaaacgagatgaaatcggtaagtcaaagagatatgtgcactcccatgttcactgcagcaatattcacaatagctaagacatgtaaacaacccaagtat--------ctatcagcagatgaatggataaagaaaatgtagtgtatatacaaagtggaatact--attcaatcttaaataaaaagaaaatct--catttgagccaacatggatgaacctggagaaca-----ttaagtggaattacccagaca-caaaaagatttaaaaattgtatgatct i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 54056 399 - 60632 ggagaaaag--ggaacccttgcacacttttggtggggatgtaagttagtacagcctttatggaaaatagtatggaggcgcctcaaaaaatt-aaaatagaactactatgtgattcagccatcccatttctgcatatatatccaaaggagatgaaatcggtaagtcaaagagatatgtgcactcccatgttcactgcagcaatattcacaatagctaagacatgtaaacaacccaagtat--------ctatcagcagatgaatggataaagaaaatgtagtgtatatacaaagtagaatact--attcaatcttaaataaaaaggaaatct--catttgagccaacatggatgaacctggagaaca-----ttaagtggaattacccagaca-caaaaagatttaaaaattgtatgatct i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1964031 399 + 2427316 ggagaaaag--ggaacccttgcacacttttggtggggatagaagttagtacagcctttatggaaaatagtatggaggcgcctcaaaaactt-aaaatagaactactatgtgattcagccatcccatttctgcatatatatccaaaggagatgaaatcggtaagtcaaagagatatgtgcactcccatgttcactgcagcaatattcacaatagctaagacatgtaaacaacccaagtat--------ctatcagcagatgaatggataaagaaaatgtagtgtatatacaaagtggaatact--attcaatcttaaataaaaaggaaatct--catttgagccaacatggatgaacctggagaaca-----ttaagtggaattacccagaca-caaaaagatttaaaaattgtatgatct i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1251014 399 + 1448899 ggagaaaag--ggaacccttgcacactcttggtggggatgtaagttagtacagccattatggaaaatagtatggaggcttctcaaaaaatt-aaaatagaactagtatgtgattcagccatcccatttctgcatatatatccaaaggagatgaaatcagtaagtcaaagagatatgtgcactcccatgttcactgcaacaatattcacaatagctaagacatgtaaacaaccgaagtat--------ctatcagcagatgaatggataaagaaaatgtagtgtatatacaaagtggaatact--attcaatcttaaataaaaaggaaatct--tatttgagacaacatggatgaacctggagaaca-----ttaagtggaattacccagaca-caaaaagatttaaaaattgtatgatct i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52986826 401 - 190850796 ggagaaaag--ggaacgctcgtacactcttggtgggaatgtaagctagtacaaccactatgaaaaatagtatggaggttcctcaaaaaatt-aaaatataactaatatgtgattcagccatcctacttctgcatatatatccaaaggaagtaaaatcagtatgtcaaagagacatgtgcactcccaggttcactgcactattattcacaatagctaagacatgtaaacaacctaaagatctatcagcctatcagcagatgaatgaataaagaaaatgtagtacatatacaaactggaatatc--gttc-----------agaaggaaatct--catttgtggcaacatggatgaatctggagaacattatgttaagtgaaattagccagaca-caaaaagatttaaacattgcatgatct i calJac3.chr3 C 0 I 267 s saiBol1.JH378162 8150314 412 - 15139346 ggagaaaag--ggaacccttgtacactctttgtgagaatgtgagctagtacaaccactatgaaaaatagtatggaggttcctcaaaaaatt-agaatataactaatatgtgattcagccatcctacttctgcatatatatccaaaggaaataaaatcagtacatcaaagagacgtgtgcactcccatgttcactgcactattattcacaatagctaagacatgttaacaacctaaagatccatcagcctatcagcagatgaatgaataaagaaaatgtagtacatttacaaactggaatacc--attcagccttacataagaagaaaatct--catttgtgacaacatggatgaatctggagaacattatgttaagtgaaattagccagaca-caaaaagatttaaacattgcatgatct i saiBol1.JH378162 C 0 I 278 s aotNan1.NW_018493494v1 9350834 404 - 11631747 agagaaaag--ggaacccttgtacactcttgatgggaatgtaagctagtacaaccattatcaaaaatagtatggagggtcctcaaaaaatt-aaaatagaactaatatgtgattcagccatcctacttctgcatatatatccaaaggaaataaaatcag--------agagacatgtgcactcccatgttcactgcacc-ttattcacagtagttatgacatgtaaactatctaaagatctatcagcctatcagcagatgaatgaataaagaaaatgtagtacatatacaaactggaatact--attcagccttacataaaaaggaaatct--catttgtgacaacatggctgaatctggagaacattatgttaagtgaaattagccagacaccaaaaagatttaaacattgcatgatct i aotNan1.NW_018493494v1 C 0 I 356 s canFam3.chr13 47948707 397 + 63241923 gaaaataagttggaacccttaagcaatgttggtagg-atgtaaaatggtgcagccactatagaaaacattatggcagttcctcagaaaattaaaaatataattaccatatgatctagcaattctagttctgggtatacatctaaaaaatttgaaatcagggtcttgtagagataattgtactcccatattcatgggagcattattgacaataactgaaaggtagaagcagtcacagtat--------ccatcgatggataaatagatgaag----tgtggtgtatttatacaatgaactatttatttccttaaaaaaaaaaaaggaaatttgacacatgctacaatatggataaaccttggggatattatgttaaatgaaat-------aca-caaaaaga--caaatactgtctgaatc i canFam3.chr13 I 972 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e otoGar3.GL873602 8588272 463 + 8790067 I a score=1405386.000000 s hg38.chr4_KI270787v1_alt 23621 243 + 111943 tatttatatgtggaatccaaaaaattcaaactcatagaaacagagagtaaaatagtagttaccagaggctaaggggtagggagtttggtgaaatgttggtcaa-agacacaaagtttcagttacacaggaggagtaagttcaagagat---ctactgcataccatggtactatagttaataacaatatatcgtatacttgaacattgtgaaga-ggtagattttaagtt-------tcttaccatacac--aaaaaa s panTro5.chr4 119585924 243 - 194502333 tatttatatgtggaatccaaaaaattcaaattcatagaaacagagagtaaaatagtagttaccagaggctaaggggtagggagtttggtgaaatgttggtcaa-agacacaaagtttcagttacacaggaggagtaagttcaagagat---ctactgcataccatggtactatagttaataacaatatactgtatacttgaacattgtgaaga-ggtagattttaagtt-------tcttaccatacac--aaaaaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121002200 243 - 195804263 tatttatatgtggaatccaaaaaattcaaattcatagaaacagagagtaaaatagtagttaccagaggctaaggggtagggagtttggtgaaatgttggtcaa-agacacaaagtttcagttacacaggaggagtaagttcaagagat---ctactgcataccatggtactacagttaataacaatatactgtatacttgaacattgtgaaga-ggtagattttaagtt-------tcttaccatacac--aaaaaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4433321 243 - 17550833 tatttatatgtggaatccaaaaaattcaaactcatagaaacagagagtaaaatagtagttaccagaggctaaggggtagggtgtttggtgaaatgttggtcaa-agacacaaagtttcaggtacacaggaggagtaagttcaagagat---ctactgcataccatggtactatagttaataacaatatattgtatacttgaacattgtgaaga-ggtagattttaagtt-------tcttaccatacac--aaaaaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69306134 243 - 118206036 tatttatatgtggaatccaaaaaattcaaactcatagacacagagagtaaaatggtagttaccagaggctaaggggtagggagtttggcgaaatgttggtcaa-agacacaaagtttcagttacacaggaggagtaagttcaagagat---ctactgcataccatggtactatagttaataacaatatattgtatacttgaacattgtgaaga-ggtagattttaagtt-------tcttaccatacac--aaaaaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111510929 241 - 190429646 tatttatatgtggaatctaaaaaattcaaactcatagaaacagagagtaaaatggtagttaccagaggctaagaggtacggagattggggaaatgttggtcaa-agacacaaagtttcagtcacac---aggagtaagttcaagagat---ctactacataccatggtactacagttaataacaacatattgtatacttgaacattgtgaaga-gatagattttaagtt-------tcttaccacaaac-aaaaaaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110679054 241 - 189454096 tatttatatgtggaatctaaaaaattcaaactcatagaaacagagagtaaaatggtagttaccagaggctaagaggtagggagattggggaaatgttggtcaa-agacacaaagtttcagtcacac---aggagtaagttcaagagat---ctactacataccatggtactacagttaataacaacatattgtatacttgaacattgtgaaga-gatagattttaagtt-------tcttaccacaaac-aaaaaaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13246823 242 + 26754465 tatttatatgtggaatctaaaaaattcaaactcatagaaacagagagtaaaatggtagttaccagaggctaagaggtagggagattggggaaatgttggtcaa-agacacaaagtttcagtcacac---aggagtaagttcaagagat---ctactacataccatggtactacagttaataacaacatattgtatacttgaacattgtgaaga-gatagattttaagtt-------tcttaccacaaacaaaaaaaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4149189 242 - 5137665 tatttatatgtggaatctaaaaaattcaaactcatagaaacagagagtaaaatggtagttaccagaggctaagaggtagggagactggggaaatgttggtcaa-agactcaaagtttcagtcacac---aggagtaagttcaagagat---ctactacataccatggtactacagttaataacaacatattgtatacttgaacattgtgaaga-gatagattttaagtt-------tcttaccacaaacaaaaaaaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 54455 241 - 60632 tatttatatgtggaatctaaaaaagtcaaactcatagaaacagagagtaaaatggtagttaccagaggctaagaggtagggagattggggaaatgttggtcaa-agacacaaagtttcagttacac---aggagtaagttcaagagat---ctactacataccatggtactacagttaacaacaacatattgtatacttgaacattgtgaaga-gatagattttaagtt-------tcttaccacaaac-aaaaaaa i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1964430 242 + 2427316 tatttatatgtggaatctaaaaaattcaaactcatagaaacagagagtaaaatggtagttaccagaggctaagaggtagggagattggggaaatgttggtcaa-agacacaaagtttcagtcacac---aggagtaagttcaagagat---ctactacataccatggtactacagttaataacaacatattgtatacttgaacattgtgaaga-gatagattttaagtt-------tcttaccacaaacaaaaaaaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1251413 241 + 1448899 tatttataggtggaatctaaaaaattcaaactcatagaaacagacagtaaaatggtagttaccagaggctaagaggtagggagattggggaaatattggtcaa-agacacaacgtttcagttacac---aggagtaagttcaagagat---ctactacataccatggtactatagttaataacagcatattgtatacttgaacattgtgaaga-gatagattttaagtt-------tcttaccataaac-aaaaaaa i colAng1.NW_012119221v1 C 0 C 0 s canFam3.chr13 47949104 247 + 63241923 cacttctatgagatatatagataatttgaattcatagaaacaa--agtagaatggt-gttgccaggtactacagggaggaagaaacaaagagttgttgtttgatgggcatagaactttagttttacgagatgaaaaaattctggagtttggttattcaataacatg--aatatatttacaacaaatata---tacacttagaaatggttaagataataagttttatcttaagcatattttactacagtt--aaaaaT i canFam3.chr13 C 0 I 4 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9351238 356 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8150726 278 - 15139346 I e calJac3.chr3 52987227 267 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I a score=66577.000000 s hg38.chr4_KI270787v1_alt 23864 10 + 111943 tggtaactat s panTro5.chr4 119586167 10 - 194502333 tggtaactat i panTro5.chr4 C 0 C 0 s panPan2.chr4 121002443 10 - 195804263 tggtaactat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4433564 10 - 17550833 tggtaaatat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69306377 10 - 118206036 tggtaaatat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111511170 10 - 190429646 tggtaaatat i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110679295 10 - 189454096 tggtaaatat i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13247065 10 + 26754465 tggtaaatat i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4149431 10 - 5137665 tggtaaatat i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 54696 10 - 60632 tggtaaatat i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1964672 10 + 2427316 tggtaaatat i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1251654 10 + 1448899 tggtaaatat i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52987494 10 - 190850796 tggtaacaga i calJac3.chr3 I 267 C 0 s canFam3.chr13 47949355 10 + 63241923 TGGTGACTAT i canFam3.chr13 I 4 I 247 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9351238 356 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8150726 278 - 15139346 I e otoGar3.GL873602 8588272 463 + 8790067 I a score=29784.000000 s hg38.chr4_KI270787v1_alt 23874 5 + 111943 gtgag s panTro5.chr4 119586177 5 - 194502333 gtgag i panTro5.chr4 C 0 C 0 s panPan2.chr4 121002453 5 - 195804263 gtgag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4433574 5 - 17550833 gtgag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69306387 5 - 118206036 gtgag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111511180 5 - 190429646 gtgag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110679305 5 - 189454096 gtgag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13247075 5 + 26754465 gtgag i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4149441 5 - 5137665 gtgag i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 54706 5 - 60632 gtgag i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1964682 5 + 2427316 gtgag i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1251664 5 + 1448899 gtgag i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52987504 3 - 190850796 gtg-- i calJac3.chr3 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9351238 356 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e saiBol1.JH378162 8150726 278 - 15139346 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47949365 247 + 63241923 I a score=402806.000000 s hg38.chr4_KI270787v1_alt 23879 53 + 111943 gtgatgcatatgttaaatagcttgatttagccattctacaatgtatacatata s panTro5.chr4 119586182 53 - 194502333 gtgatgcatatgttaaatagcttgatttagccattctacaatgtatacatata i panTro5.chr4 C 0 C 0 s panPan2.chr4 121002458 53 - 195804263 gtgatgcatatgttaaatagcttgatttagccattctacaatgtatacatata i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4433579 53 - 17550833 gtgacgcatatgttaaatagcttgatttagccattctacaatgtacacatata i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69306392 53 - 118206036 gtgatgcatatgttaaatagcttgatttagccattctacaatgtatacatata i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111511185 53 - 190429646 gtgatgcatatgttaaatagcttgatttagccattttacaatgtatacataca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110679310 53 - 189454096 gtgatgcatatgttaaatagcttgatttagccattttacaatgtatacataca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13247080 53 + 26754465 gtgatgcatatgttaaatagcttgatttagccattttacaatgtatacataca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4149446 53 - 5137665 gtgatgcatatgttaaatagcttgatttagccattttacaatgtatacataca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 54711 53 - 60632 gtgatgcatatgttaaatagcttgatttagccattttacaatgtatacataca i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1964687 53 + 2427316 gtgatgcatatgttaaatagcttgatttagccattttacaatgtatacataca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1251669 53 + 1448899 gtgatgcatatgttaaatagcttgatttaggcattttacaatgtatacataca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52987507 52 - 190850796 -TGatgtatatgttagatagcttgatttagccattctactgtgtgtgtgtgtg i calJac3.chr3 C 0 I 19 s saiBol1.JH378162 8151004 53 - 15139346 gtgatgtatatgttaaatagcttgatttagccattctacagtgtgtgtgtgtg i saiBol1.JH378162 I 278 I 38 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9351238 356 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47949365 247 + 63241923 I a score=17381.000000 s hg38.chr4_KI270787v1_alt 23932 2 + 111943 tc s panTro5.chr4 119586235 2 - 194502333 tc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121002511 2 - 195804263 tc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4433632 2 - 17550833 tc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69306445 2 - 118206036 tc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111511238 2 - 190429646 tc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110679363 2 - 189454096 tc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13247133 2 + 26754465 tc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4149499 2 - 5137665 tc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 54764 2 - 60632 tc i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1964740 2 + 2427316 tc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1251722 2 + 1448899 tc i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8151095 2 - 15139346 tc i saiBol1.JH378162 I 38 C 0 s aotNan1.NW_018493494v1 9351594 2 - 11631747 tc i aotNan1.NW_018493494v1 I 356 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e calJac3.chr3 52987559 19 - 190850796 I e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47949365 247 + 63241923 I a score=404345.000000 s hg38.chr4_KI270787v1_alt 23934 53 + 111943 aaaatatcatgctgtgtgccacaaataatacaatttt--------------------------tagtcatcaatttaaa- s panTro5.chr4 119586237 53 - 194502333 aaaatatcatgctgtgtgccacaaataatacaatttt--------------------------tagtcatcaattaaaa- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121002513 53 - 195804263 aaaatatcatgctgtgtgccacaaataatacaatttt--------------------------tagtcatcaattaaaa- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4433634 50 - 17550833 aaaat---atgctgtgtgccacaaataatacaatttt--------------------------tagtcatcaattaaaa- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69306447 53 - 118206036 aaaatatcatgctgtgtgccacaaataatacaatttt--------------------------tagtcatcaattaaaa- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111511240 53 - 190429646 aaaatatcatgctgtgtgacacaaataatacaacttt--------------------------tagtcgtcaatttaaa- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110679365 53 - 189454096 aaaatatcatgctgtgtgacacaaataatacaatttt--------------------------tagtcgtcaattttaa- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13247135 53 + 26754465 aaaatatcatgctgtgtaacacaaataatacaatttt--------------------------tagtcatcaatttaaa- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4149501 52 - 5137665 aaaatatcatgctgtgtgacacaaataatacaatttt--------------------------tagtcgtcaa-ttaaa- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 54766 49 - 60632 aaaatatcatgctgtgtgacacaaataatacaatttt--------------------------tagtcgtcaatt----- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1964742 52 + 2427316 aaaatatcatgctgtgtgacacaaataatacaatttt--------------------------tagtcgtcaattt-aa- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1251724 53 + 1448899 aaaatatcatgctgtgtgacacaaataatacaatttt--------------------------tagacgtcaatttaaa- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52987578 47 - 190850796 ---acatcatgctgtgtgtcaca---aatacaatttt--------------------------tagttgtcaatttaaa- i calJac3.chr3 I 19 C 0 s saiBol1.JH378162 8151097 53 - 15139346 aaaacatcattctgtgtgtcacaaataatacaatttt--------------------------tagttgtcaatttaaa- i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9351596 53 - 11631747 aaaatatcatgctgtgtgccacaaataatacaatctt--------------------------tagttgtcaatttaaa- i aotNan1.NW_018493494v1 C 0 I 11 s canFam3.chr13 47949612 73 + 63241923 aaaaaaTTATAGTGTG-------AAGATTTTATTTTTCTGTGTTTTTTGGTTGGGGGAGGTAGTGGTTTTCAGTTAAGaa i canFam3.chr13 I 247 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e otoGar3.GL873602 8588272 463 + 8790067 I a score=22450.000000 s hg38.chr4_KI270787v1_alt 23987 15 + 111943 aaT-TTAATAAATAGT---- s panTro5.chr4 119586290 15 - 194502333 aaT-TTAATAAATAGT---- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121002566 15 - 195804263 aaT-TTAATAAATAGT---- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4433684 15 - 17550833 aaT-TTAATAAATAGT---- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69306500 15 - 118206036 aaT-TTAATAAATAGT---- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111511293 13 - 190429646 aaa---aaTAAATAAT---- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110679418 13 - 189454096 aaa---aaTAAATAAT---- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13247188 13 + 26754465 aaT---AATAAATAAT---- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4149553 13 - 5137665 aaa---aaTAAATAAT---- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 54815 11 - 60632 --a---aaaaaaTAAT---- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1964794 13 + 2427316 aaa---aaTAAATAAT---- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1251777 16 + 1448899 aaaaTTAACAAATAAT---- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52987625 7 - 190850796 ---------aaaTGTT---- i calJac3.chr3 C 0 I 4 s saiBol1.JH378162 8151150 7 - 15139346 ---------aaaTGTT---- i saiBol1.JH378162 C 0 C 0 s canFam3.chr13 47949685 15 + 63241923 -----aattttatatttttt i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9351649 11 - 11631747 I e cebCap1.NW_016107439v1 6935426 220 - 7304997 I e otoGar3.GL873602 8588272 463 + 8790067 I a score=29232.000000 s hg38.chr4_KI270787v1_alt 24002 4 + 111943 AAAT s panTro5.chr4 119586305 4 - 194502333 AAAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121002581 4 - 195804263 AAAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4433699 4 - 17550833 AAAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69306515 4 - 118206036 AAAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111511306 4 - 190429646 AAAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110679431 4 - 189454096 AAAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13247201 4 + 26754465 AAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4149566 4 - 5137665 AAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 54826 4 - 60632 AATA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1964807 4 + 2427316 AAAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1251793 4 + 1448899 AAAT i colAng1.NW_012119221v1 C 0 I 8 s calJac3.chr3 52987636 4 - 190850796 AAAT i calJac3.chr3 I 4 C 0 s cebCap1.NW_016107439v1 6935646 4 - 7304997 AAAT i cebCap1.NW_016107439v1 I 220 C 0 s canFam3.chr13 47949700 4 + 63241923 atat i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e aotNan1.NW_018493494v1 9351649 11 - 11631747 I e saiBol1.JH378162 8151157 0 - 15139346 C e otoGar3.GL873602 8588272 463 + 8790067 I a score=299238.000000 s hg38.chr4_KI270787v1_alt 24006 37 + 111943 ----AATAAGCAGTTTTTTATATTA----AGTATA-------GAAACCTTAA s panTro5.chr4 119586309 36 - 194502333 ----AATAAGCAG-TTTTTATATTA----AGTATA-------GAAACCTTAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121002585 36 - 195804263 ----AATAAGCAG-TTTTTATATTA----AGTATA-------GAAACCTTAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4433703 37 - 17550833 ----AATAAGCAGTTTTTTATATTA----AGTATA-------GAAACCTTAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69306519 37 - 118206036 ----AATAAGCAGTTTTCTATATTA----AGTATA-------GAAACTTTAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111511310 37 - 190429646 ----AATAAGCAGTTTTCTATATTA----AGTATA-------GAAACTTTAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110679435 37 - 189454096 ----AATAAGCAGTTTTCTATATTA----AGTATA-------GAAACTTTAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13247205 37 + 26754465 ----AATAAGCAGTTTTCTATATTA----AGTATA-------GAAACTTTAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4149570 37 - 5137665 ----AATAAGCAGTTTTCTATATTA----AGTATA-------GAAACTTTAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 54830 37 - 60632 ----AATAAGCAGTTTTCTATATTA----AGTATA-------GAAACTTTAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1964811 37 + 2427316 ----AATAAGCAGTTTTCTATATTA----AGTATA-------GAAACTTTAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1251805 37 + 1448899 ----AAAAAGCAGTTTTCTATATTA----AGTATA-------GAAACTTTAA i colAng1.NW_012119221v1 I 8 C 0 s calJac3.chr3 52987640 31 - 190850796 ----AATAAGCAGTTT----TATTA----AGTAT---------AAATTTAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8151157 19 - 15139346 ----------------------TTA----AGTATA-------GAAACTTAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6935650 37 - 7304997 ----AATAAGCAGTTTTCTATATTA----AGTATA-------GAAACTTCAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9351660 37 - 11631747 ----AATAAGCAGTTTTCTATATTA----AGTATA-------GAAACTTAAA i aotNan1.NW_018493494v1 I 11 C 0 s canFam3.chr13 47949704 52 + 63241923 taCCACTAGATATTACATTAAACTAAACTAGTATGTACTTTTGGAACATTAA i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057421 0 - 5279953 C e otoGar3.GL873602 8588272 463 + 8790067 I a score=2946083.000000 s hg38.chr4_KI270787v1_alt 24043 273 + 111943 AAAGAGAAAAATCAAATAATTTTATCTATTACTTTTAATTTAATGGCAGCTAAAAATAAGCAGAAATACTACAAATCT------------------------AATAAATTCAAGAACAGAAATTTAGGAGGAAGATATGCAAATGAAATTACTCATAAGATTATATATTACAAGGCAAATCAAACTGTTGTATAGGTCAAGCTAATC-TTTTTTTTTCAGTGTAATGAAGTAGGATTTG-CCCATTAACTAAGTTATGTAGATCTACCTTGCTTTTTTGCCTATGTTCAACAAGATACT s panTro5.chr4 119586345 272 - 194502333 AAAGAGAAAAATCAAATAATTTTGTCTATTACTTTTAATTTAATGGCAGCTAAAAATAAGTAGAAATACTACAAATCT------------------------AATAAATTCAAAAACAGAAATTTAGGAGGAAGATATGCAAATGAAATTACTCATAGGATTATATATTACAAGGCAAATCAAACTGTTGTATAGGTCAAGCTAATC--TTTTTTTTCAGTGTAATGAAGTAGGATTTG-CCCATTAACTAAGTTATGTAGATCTACCTTGCTTTTTTGCCTATGTTCAACAAGATACT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121002621 270 - 195804263 AA--AGAAAAATCAAATAATTTTGTCTATTACTTTTAATTTAATGGCAGCTAAAAATAAGTAGAAATACTACAAATCT------------------------AATAAATTCAAAAACAGAAATTTAGGAGGAAGATATGCAAATGAAATTACTCATAGGATTATATATTACAAGGCAAATCAAACTGTTGTATAGGTCAAGCTAATC--TTTTTTTTCAGTGTAATGAAGTAGGATTTG-CCCATTAACTAAGTTATGTAGATCTACCTTGCTTTTTTGCCTATGTTCAACAAGATACT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4433740 271 - 17550833 AA-GAGAAAAATCAAATAATTTTATCTATTACTTTTAATTTAATGGCAGCTAAAAATAAGCAGAAATACTACAAATCT------------------------AATAAATTCAAGAACAGAAATTTAGGAGGAAGATATGCAAATGAAATTACTCATAGGATTATATATTACAAGGCAAATCAAACTGTTGTATAGGTCAAGCTAATC--TTTTTTTTCAGTGTAATGAAGTAGGATTTG-CCCATTAACTAAGTTACATAGATCTACCTTGCTTTTTTGCCTATGTTCAACAAGATACT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69306556 267 - 118206036 AAAGAGAA-----AAATAATTTTATCTATTACTTTTAATTTAATGGCAGCTAAAAATAAGCAGAAATACTACAAATCT------------------------AATAAATTCAAGAACAGAAATTTAGGAGGAAGATATGCAAATGAAATTACTCATAGGATTATATTTTACAAGGTAAATCAAACTGTTGTATAAGTCAAGCTAATC--TTTTTTTTCAGTATAATGAAGTAGGATTTG-CCCATTAACTAAGTTATGTAGATCTACCTTGCTTTTTTGCCTATGTTCAACAAGATACT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111511347 272 - 190429646 AAAGACAAAAATAAAATAATTTTATCTATTACTTTTAATTTAATAGCAGCTAAAAATAAGCAGAAATGCTACAAATCT------------------------AATAAATTCAAGAACAGAAATTTACAAGGAAGATATGCAAATGAAATTATTCATAGGATTATATGTTACAAGGCAAATCAAACTGTTGTATAGGTCAAGCTAATC--TTTTTTTTCAGTATAATGAAGTAGGATTTG-CCCATTAACTAAGTTATGTAGATCTACCTTGCTTTTTTGCCTATGTTCAACAAGATACT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110679472 272 - 189454096 AAAGACAAAAATAAAATAATTTTATCTATTACTTTTAATTTAATAGCAGCTAAAAATAAGCAGAAATGCTACAAATCT------------------------AATAAATTCAAGAACAGAAATTTACAAGGAAGATATGCAAATGAAATTATTCATAGGATTATATGTTACAAGGCAAATCAAACTGTTGTATAGGTCAAGCTAATC--TTTTTTTTCAGTATAATGAAGTAGGATTTG-CCCATTAACTAAGTTATGTAGATCTACCTTGCTTTTTTGCCTATGTTCAACAAGATACT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13247242 272 + 26754465 AAAGACAAAAATAAAATAATTTTATCTATTACTTTTAATTTAATAGCAGCTAAAAATAAGCAGAAATGCTACAAATCT------------------------AATAAATTCAAGAACAGAAATTTACAAGGAAGATATGCAAATGAAATTATTCATAGGATTATATGTTACAAGGCAAATCAAACTGTTGTATAGGTCAAGCTAATC--TTTTTTTTCAGTATAATGAAGTAGGATTTG-CCCATTAACTAAGTTATGTAGATCTACCTTGCTTTTTTGCCTATGTTCAACAAGATACT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4149607 272 - 5137665 AAAGACAAAAATAAAATAATTTTATCTATTACTTTTAATTTAATGGCAGCTAAAAATAAGCAGAAATGCTACAAATCT------------------------AATAAATTCAAGAACAGAAATTTACGAGGAAGATATGCGAATGAAATCACTCATAGGATTATATGTTACAAGGCAAATCAAACTGTTGTATAGGTCAAGCTAATC--TTTTTTTTCAGTATAATGAAGTAGGATTTG-CCCATTAACTAAGTTATGTAGATCTACCTTGCTTTTTTGCCTATGTTCAACAAGATACT i cerAty1.NW_012001307v1 C 0 I 324 s chlSab2.chr7_KE147969v1_random 54867 272 - 60632 AAAGACAAAAATAAAATAATTTTATCTATCACTTTTAATTTAATGGCAGCTAAAAATAAGCAGAAATGCTACAAATCT------------------------AATAAATTCAAGAACAGAAATTTACGAGGAAGATATGCAAATGAAATTACTCATAGGATTATATGTTACAAGGCAAATCAAACTGTTGTATAGGTCAAGCTAATC--TTTTTTTTCGGTATAATGAAGTAGGATTTG-CCCATTAACTAAGTTATGTAGATCTACCTTGCTTTTTTGCCTATGTTCAACAAGATACT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1964848 272 + 2427316 AAAGACAAAAATAAAATAATTTTATCTATTACTTTTAATTTAATGGCAGCAAAAAATAAGCAGAAATGCTACAAATCT------------------------AATAAATTCAAGAACAGAAATTTACGAGGAAGATATGCGAATGAAATCACTCATAGGATTATATGTTACAAGGCAAATCAAACTGTTGTATAGGTCAAGCTAATC--TTTTTTTTCAGTATAATGAAGTAGGATTTG-CCCATTAACTAAGTTATGTAGATCTACCTTGCTTTTTTGCCTATGTTCAACAAGATACT i manLeu1.NW_012104388v1 C 0 I 324 s colAng1.NW_012119221v1 1251842 272 + 1448899 AAAGACCAAAATAAAATAATTTTATCTATTACTTTTAATTTAATGGCAGCTAAAAATAAGCAGAAATGCTACAAATCT------------------------AATAAATTCAAGAACAGAAATTTATGAGGAAGATAGGCAAATGAAATTACTCATAGGATTATATATTACAAGGCAAATCAAACTGTTGTATAGGTCAAGCTAATC--TTTTTTTTCAGTATAATGAAGTAGGATTTG-CCCATTAACTAAGTTATGTAGATCTACCTCGCTTTTTTGCCTATGTTCAACAAGATACT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52987671 267 - 190850796 AAAGA--AAAATCAAATAATGTCATATATTA---TACATTTAATGGCAGCTAAAAATAAGCAGAAATACTATAAATCT------------------------AATAAATTCAAGAACAGAAATTTAGGAGGAAGATATGCAAATGAAATTATTTATAGGATTATATATTATAAGGCAAATCAAATTGTTGCATAGGTCGAGTTAATC---TTTTTTTCAGTATAATGAAGTAAGATTTGCCCCATCAACTAAGTCTTGTAGGTGTACCTTTCTTTTTTGGCTATGTTCAACAAGACACT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8151176 270 - 15139346 AAAGG--AAAATCAAATAATGTCATATATTA---TACATTTAATGGCAGCTAAAAATAAGCAGAAATACTACAAATCT------------------------AATAAATTCAAGAACAGAAATTTAGGAGGAAGATACGCAAATGAAGTTACTCACAGGATTATATATTACAAGGCAAATCAAACTGTTGCATAGGTCAGGTTAGTCTTTTTTTTTTCAGTATAATGAAGTAAGAGTTGCCCCATCAACTAAGTCTTGTAGGTCTACCTTGCTTTTTTGGCTATGTTCAACAAGACACT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6935687 266 - 7304997 AAAGA--AAAATCAAATAATGTCATATATTA---TACATTTAATGGCAGCTAAAAATAAGCAGAAATACTACAATTCT------------------------AATAAATTCAAGAACAGAAATTTAGGAGGAAGATATGCAAATGAAATT-CTCATAGGATTATATATTACAAGGCAAATCAAACAGTTGTATAGGTCAAGTTAATC---TTTTTTTCAGTATAATGAAGTAGGATTTGCCCCATCAACTAAGTCTTGTAGGTCTACCTTGCTTTTTCGGCTATGTTCAACAAGACACT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9351697 266 - 11631747 AAAGA--AAAATCAAATAATGTCATATATTA---TACATTTAATGGCAGTTAAAAATAAGCAGAAATACTACAAGTCT------------------------AATAAATTCAAGAACAGAAATTTAGGAGGAAGATACGCAAATGAAATTACTCATAGGATTATATATTACAAGGC-AATCAAACTGTTGCATAGGTCAAGTTAATC---TTTTTTTCAGTATAATGAAGTAGGATTTGCCCCATTAACTAAGTCTTGTAGGTCTACCTTGCTTTTTTGGCTATATTCAACAAGACACT i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47949756 280 + 63241923 GAAGG---GAATAAAATTATTTTATCTATTACCTTAAATTAAATAGTATCTTTAAATAAGCAAAAATACCACAAATACTTTGTGTTTTCACAATCACTTGAAAATAAATTCAAGAACAGAAATTAAGGAGAAAAATATTCAAATGAAGTTATATA-AGGATTACA--GTACAA-GCAAATCAGCCTGTTACAAATGTCAAACTCATT----TTCTTTCAGTATAATGATGTAGGATTTG-CCC---TACTAAGTTGTGTGGGTCTACCTTGCTTCT----CCACTTTCAGCAGGATAGT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4057421 277 - 5279953 AAAGAAGTGAATTCAATTATTTTATCTATTACT-TTAATTAAATAGCAGCTAAAAACAAGC----ACATCACAAATCCTTTGTGGTTTCACAATCATTTGAAAATAAATTCAAGAACAGAAATTTATAAG-AAAACATTCAAATGAAATTACTGTAAGGGTTATGTATCAC--------TC--CTTGTTATATAGGTCAAGCTAATT----TTCTTTCAGTATACTAATGTAGAATTTT-CCCTACTACCAAGGTGTATAGGTCTACCTTGCTTCTATA-CTATTTTTAGCAAAGCAAT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e otoGar3.GL873602 8588272 463 + 8790067 I a score=2438766.000000 s hg38.chr4_KI270787v1_alt 24316 215 + 111943 TAGAAAGGAATTATTTCCAACCCATTAG--------------CATGgtggtttttcaaacctgagtg----taagaatcacctggggaatctgtgaaaattgcagatcccacggcatcatctccttctgccagattctaattcag-taggtctgaggtgaagccaaggaatctgcattttag---cacaca----------tacaagggtattttagtgcttcaggttcacagaccatactttgaga s panTro5.chr4 119586617 215 - 194502333 TAGAAAGGAATTATTTCCAACCCATTAG--------------CATGgtggtttttcaaacctgagtg----taagaatcacctggggaatctgtgaaaattgcagatcccacggcatcatctccttctgccagattctaattcag-taggtctgaggtgaagccaaggaatctgcattttag---cacaca----------tacaagggtgttttagtgcttcaggttcacagaccatactttgaga i panTro5.chr4 C 0 C 0 s panPan2.chr4 121002891 215 - 195804263 TAGAAAGGAATTATTTCCAACCCATTAG--------------CATGgtggtttttcaaacctgagtg----taagaatcacctggggaatctgtgaaaattgcagatcccacggcatcatctccttctgccagattctaattcag-taggtctgaggtgaagccaaggaatctgcattttag---cacaca----------tacaagggtgttttagtgcttcaggttcacagaccatactttgaga i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4434011 215 - 17550833 TAGAAAGGAATTATTTCCAACCCATTAG--------------CATGgtggtttttcaaacctgagtg----taagaatcacctggggaatctgtgaaaattgcagatcccacggcatcatctccttctgccagattctaattcag-taggtctggggtgaagccaaggaatctgcattttag---cacaca----------tacaagggtattttagtgcttcaggttcacagaccatactttgaga i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69306823 215 - 118206036 TAGAAAGGAATTATTTCCAACCCATTAG--------------CATGgtggtttttcaaacctgagtg----taagaatcacctggagaatctgtgaaaattgcagatcccatggcatcatctccttctgccagattctaattcag-taggtctagggtgaagccaaggaatctgcattttag---cacaca----------tacaagggtattttattgcttcaggttcacagaccatactttgaga i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111511619 215 - 190429646 TAGAAGGGAATTATTTCCAACCCATTAG--------------CTTGgtggtttttcacacctgagtg----taagaatcacctggggaatctgtgaaaattgcagatcccatggcgccatctccttctgccagattctatttcag-taggtctggggtgaaaccaaggaatctgcattttag---cataca----------tacaagggtattttagtgcttcagtttcacagaccatattttgaga i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110679744 215 - 189454096 TAGAAGGGAATTATTTCCAACCCATTAG--------------CTTGgtggtttttcacacctgagtg----taagaatcacctggggaatctgtgaaaattgcagatcccatggcgccatctccttctgccagattctatttcag-taggtctggggtgaaaccaaggaatctgcattttag---cataca----------tacaagggtattttagtgcttcagtttcacagaccatattttgaga i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13247514 215 + 26754465 TAGAAGGGAATTATTTCCAACCCATTAG--------------CTTGgtggtttttcacacctgagtg----taagaatcacctggggaatctgtgaaaattgcagatcccatggcgccatctccttctgccagattctatttcag-taggtctggggtgaaaccaaggaatctgcattttag---cataca----------tacaagggtattttagtgcttcagtttcacagaccatattttgaga i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4150203 215 - 5137665 TAGAAGGGAATTATTTCCAACCCATTAG--------------CATGgtggtttttcacacctgagtg----taagaatcacctggggaatctgtgaaaattgcagatcccatggctccatctccttctgccagattctatttcag-taggtctggggtgaaaccaaggaatctgcattttag---cacaca----------tacaagggtattttagtgcttcagtttcacaaaccatattttgaga i cerAty1.NW_012001307v1 I 324 C 0 s chlSab2.chr7_KE147969v1_random 55139 215 - 60632 TAGAAGGGAATTATTTCCAACCCATTAG--------------CATGgtggttttccacacctgagtg----taagaatcacctggggaatctgtgaaaattgcagatcccatggctccatctccttctgccagattctatttcag-taggtctggggtgaaaccaaggaatctgcattttag---cacaca----------tacaagggtattttagtgcttcagtttcacagaccatattttgaga i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1965444 215 + 2427316 TAGAAGGGAATTATTTCCAACCCATTAG--------------CATGgtggtttttcacacctgagtg----taagaatcacctggggaatctgtgaaaattgcagatcccatggctccatctccttctgccagattctatttcag-taggtctggggtgaaaccaaggaatctgcattttag---cacaca----------tacaagggtattttagtgcttcagtttcacagaccatattttgaga i manLeu1.NW_012104388v1 I 324 C 0 s colAng1.NW_012119221v1 1252114 215 + 1448899 TAGAAGGGAATTATTTCCAACCCATTAG--------------CATGGTAGTttttcacacctaagtg----taagaatcacctggagaatctgtgaaaattgcaggtcccatggcgtcatctccttctgccagattctatttcag-taggtctggggtgaaaccaaggaatctgcattttag---cacaca----------tacaagggtattttagtgcttcaatttcatagaccatattttgaga i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52987938 212 - 190850796 TAGAGAGGAATTATTTCCAACCCATTAG--------------CATGgtggtttt-caaaccctagtg----taagaatcgcctggggaatc--tgaaaattgcagatcccaaggcatcatctccttctgccagattctaattcag-taagtctggggtaaagccaaggaatctgcagtttag---cacaca----------tacaagggtattttaatgcttcaggttcacagaccatactttgaga i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8151446 212 - 15139346 TAGAGAGGAATTATTTCCAACCCATTAA--------------CATGgtggtttt-caaacccaagtg----taagaatcacctggggaatttgtgaaaattgcagatcccagggcatcatctccttctgccagattctaattcagttaggtctggggtaaagccaaggaatctgcagttt------acaca----------tacaagggtattttaatgcttcaggttcgcagaccatactttgaga i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6935953 212 - 7304997 TAGAGAGGAATTATTTCCAACCCATTAG--------------CATGgtggtttt-caaaccggagtg----taagaatcacctggggaatctgtgaaaattgcagatcccaaggcatcatctctttctgccagattctaattcagttaggtctggggtaaagccaagaaatcttcagttt------acaca----------tacaagagtattttaatgcttcaggttcacagaccattctttgaga i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9351963 212 - 11631747 TAGAGATGAATTATTTCCAACCCATTAG--------------CATGgtggtttt-caaacccgagtg----taagaatcacctggggaatctgtgaaaattgcagatcccaaggcatcatctctttctgccacattctaattcagttaggtctggggtaaagccaaggaatctgcagttt------acaca----------tacaagagtattttaatgcttcaggttcacagaccatactttgaga i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47950036 214 + 63241923 TAGA----AATTATTTCTAATTTATCAGAAATAATAAATTGACAAGAtggtttc-gaaacctgagtgtgaataagaatcacatggagaatttgtgaaacttgcagatccctgggcaccatccccttccaccagattctggttcag-taggt-----------------------cATTTTAG----ACACAGTATAGATGGCAGGGGAGGATTCTGACCCTTGAAATTCACAAACTATACTTTGAGA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4057698 221 - 5279953 TAGAGAGGAATAATTTCTGACTTGTTAA--------------CATGGCTAtttt-caaacttgagtgtgagtaagaatcacctgggtaatttgctcaaattacagatctcaaggtaacatcccttttcaccagattctgattcag-taggtttgggatgagatcaaggaatctgcattttaggcacacaca----------gaccagggaattctgatgctagaggttcacagaccatactttgaaa i dasNov3.JH568349 C 0 I 41 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e otoGar3.GL873602 8588272 463 + 8790067 I a score=428184.000000 s hg38.chr4_KI270787v1_alt 24531 42 + 111943 TAAACTATATTGTAGATGGTC--------AAGTAAAAACAATCTATCCCA s panTro5.chr4 119586832 42 - 194502333 TAAACTATATTGTAGATGGTC--------AAGTAAAAACAATCTATCCCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121003106 42 - 195804263 TAAACTATATTGTAGATGGTC--------AAGTAAAAACAATCTATCCCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4434226 42 - 17550833 TAAACTATATTGTAGATGGTC--------AAGTAAAAACAATCTATCCCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69307038 42 - 118206036 TAAACTATATTGTAGATGGCC--------AAGTAAAAATGATCTATCCCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111511834 42 - 190429646 TAAACTATATTGTAGGTGGTC--------AAATAAAAACAATCTATCCCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110679959 42 - 189454096 TAAACTATATTGTAGATGGTC--------AAATAAAAACAATCTATCCCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13247729 42 + 26754465 TAAACTATATTGTAGATGGTC--------AAATAAAAACAATCTATCCCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4150418 50 - 5137665 TAAACTATATTGTAGGTGGTCAAATAAAAAAATAAAAAAAATCTATCCCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 55354 50 - 60632 TAAACTATATTGTAGATGGTCAAATAAAAAAATAAAAACAATCTATCCCA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1965659 50 + 2427316 TAAACTATATTGTAGATGGTCAAATAAAAAAATAAAAACAATCTATCCCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1252329 42 + 1448899 TAAACTATATTGTAGATGGGC--------AAATAAAAACAATCTATCCCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52988150 39 - 190850796 TAAACTGTATTG-AGATGGTC--------AGGTAAAAACAATCTATCA-- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8151658 42 - 15139346 TAAACTGTATTGTAGATGGTC--------AAGTAAAAACAATCTATCCCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6936165 42 - 7304997 TAAACTGTATTGTAGATGGTC--------AAGTAAAAACAATCTATCCCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9352175 42 - 11631747 TAAACTGTATTGTAGATGGTC--------AAGTAAAAACAACCTATCCCA i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47950250 41 + 63241923 TAAACTGCATTGCAAACGATT---------AGTAAAAACAACCCATCCCA i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057919 41 - 5279953 I e otoGar3.GL873602 8588272 463 + 8790067 I a score=80674.000000 s hg38.chr4_KI270787v1_alt 24573 13 + 111943 CATGTATCCTGAt s panTro5.chr4 119586874 12 - 194502333 CATGTATCCTGA- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121003148 12 - 195804263 CATGTATCCTGA- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4434268 12 - 17550833 CATGTATCCTGA- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69307080 12 - 118206036 CGTGTATCCTGA- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111511876 13 - 190429646 CATGTATCCTGAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110680001 13 - 189454096 CATGTATCCTGAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13247771 13 + 26754465 CATGTATCCTGAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4150468 13 - 5137665 CATGTATCCTGAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 55404 13 - 60632 CATGTATCCTGAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1965709 13 + 2427316 CATATATCCTGAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1252371 13 + 1448899 CATGTATCCTGAA i colAng1.NW_012119221v1 C 0 C 0 s cebCap1.NW_016107439v1 6936207 13 - 7304997 CAAATACCCTGAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9352217 13 - 11631747 CAAATACCCTGAT i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47950291 13 + 63241923 CATGTAGCTTGAA i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057919 41 - 5279953 I e saiBol1.JH378162 8151700 0 - 15139346 C e calJac3.chr3 52988189 0 - 190850796 C e otoGar3.GL873602 8588272 463 + 8790067 I a score=-25751.000000 s hg38.chr4_KI270787v1_alt 24586 3 + 111943 t-----------------tt s gorGor5.CYUI01014963v1 4434280 3 - 17550833 t-----------------tt i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111511889 1 - 190429646 t------------------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110680014 1 - 189454096 t------------------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13247784 1 + 26754465 t------------------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4150481 20 - 5137665 tttatttatttatttatttt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 55417 19 - 60632 TTTATTTTtttattt-tttt i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1965722 20 + 2427316 TTTATTTAtttatttatttt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1252384 1 + 1448899 t------------------- i colAng1.NW_012119221v1 C 0 C 0 s cebCap1.NW_016107439v1 6936220 3 - 7304997 -----------------TTT i cebCap1.NW_016107439v1 C 0 I 2 s canFam3.chr13 47950304 3 + 63241923 ----------TAT------- i canFam3.chr13 C 0 I 210 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057919 41 - 5279953 I e aotNan1.NW_018493494v1 9352230 0 - 11631747 C e saiBol1.JH378162 8151700 0 - 15139346 C e calJac3.chr3 52988189 0 - 190850796 C e otoGar3.GL873602 8588272 463 + 8790067 I e panTro5.chr4 119586886 0 - 194502333 C e nomLeu3.chr9 69307092 0 - 118206036 C e panPan2.chr4 121003160 0 - 195804263 C a score=1573063.000000 s hg38.chr4_KI270787v1_alt 24589 291 + 111943 ttttttttttt-ttttttt------gagacacagtcttgctctgtcgcccaggctggagtgcagtggcacaatttcagctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggtgcatgccaccacgctcgcctaatttttgtaattttagtagagatggggtttcaccatgttggctaggctggtctcaaactcctgaccttgtgatccacccgcctcagcctcccaaagtgctgggattacaggcgtgagccactgtg s panTro5.chr4 119586886 290 - 194502333 -tttttttttt-ttttttt------gaggcactgtcttgctctgtcgcccaggctggagtgcagtggcacaatttcagctcactgcaacctctgcctcctgggttcaagcaattctcccgcctcagcctcccgagtagctgggattacaggcgcatgccaccacgctcgcctaatttttgtaattttagtagagacggggtttcaccatgttggctaggctggtctcaaactcctgaccttgtgatccacccacctcagcctcccaaagtgctgggattacaggcgtgagccaccgtg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121003160 289 - 195804263 --ttttttttt-ttttttt------gagacactgtcttgctctgtcgcccaggctggagtgcagtggcacaatttcagctaactgcaacctctgcctcctgggttcaagcaattctcccacctcagcctcccgagtagctgggattacaggcgcatgccaccacgctcgcctaatttttgtaattttagtagagatggggtttcaccatgttggctaggctggtctcaaactcctgaccttgtgatccacccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgtg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4434283 291 - 17550833 ttttttttttt-ttttttt------gagacacagtcctactctgtcgcccaggccagagtgcagtggcacaatttcagctcactgcaatctctgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagctggggttacaggcgcatgccaccacgctcgcctaatttttgtaattttagtagagacggggtttcaccatgttggctaggctggtctcaaactcctgaccttgtgatccacccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgtg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69307092 288 - 118206036 ---Attttttt-ttttttt------gagacacagtcttgctctgttgcccaggctggagtgcagtggcacgatttcagctcactgcaatctccgcctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcgcatgccaccatgctcgcctaatttttgtatttttagtagagatggggtttcaccgtgttggccaggctggtctcaaactcctgaccttgtgatccacccgcctcagcctcccaaagtgctgggattacaggcgtaagccactgtg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111511890 289 - 190429646 ------ttttt-tttttt--ggggggggacacagtcttgctctgtcacccaggctggagtgcagttgtatgaaatcagctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctccccagtagctgggattacaggcgcatgccaccaaccccgcctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccacccgcctcagcctcccaaagtgctgcgattaccggcatgagccaccgtg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110680015 290 - 189454096 ------ttttt-ttttttt-ggggggggacacagtcttgctctgtcacccaggctggagtgcagtggtatgaaatcagctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctccccagtagctgggattacaggcgcatgccaccaaccccgcctagtttttgtatttttagtagacacagggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccacccgcctcagcctcccaaagtgctgcgattaccggcatgagccaccgtg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13247785 291 + 26754465 ------ttttt-tttttttgggggggggacacagtcttgctctgtcacccaggctggagtgcagtggtatgaaatcagctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctccccagtagctgggattacaggcgcatgccaccaaccccgcctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccacccgcctcagcctcccaaagtgctgcgattaccggcatgagccaccgtg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4150501 290 - 5137665 attttatttta-ttttttt------gagacacagtcttgctctgtcacccaggctggagtgcagtggcatgaaatcagctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcaacctccccagtagctggaattacaggcacatgccaccaaccccgcctaatttttgtatttttagtagagaca-ggtttcaccatgttggccaggctggtctcaaactcctgactttgtgatccacccgccttagtctcccaaagtgctgggattacaggcatgagccaccgtg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 55436 292 - 60632 attttattttatttttttt------gagacacagtcttgctctgtcacccaggctggagtgcagtggcatgaaatcagctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcaacctccccagtagctggaattacaggcacatgccaccaaccctgcctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccacctgcctcagtctcccaaagtgctgggattacaggcatgagccaccatg i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1965742 290 + 2427316 attttattttg-ttttttt------gagacacagtcttgctctgtcacccaggctggagtgcagtggcatgaaatcagctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcaacctccccagtagctggaattacaggcacatgccaccaaccccgcctaatttttgtatttttagtagagaca-ggtttcaccatgttggccaggctggtctcaaactcctgactttgtgatccgcccgccttagtctcccaaagtgctgggattacaggcatgagccaccgtg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1252385 289 + 1448899 --ttttttttt-tattttt------gagacacagtcttgctctgtcacccgggctggagtgcaatggcatgaaatcagctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcagcctccccagtagcagggatcacaggcgcatgccaccaagcccgcctaatttttgtatttttagtagtgacaggatttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccacccacctcagcctcccaaagtgctgggattataggcatgagccaccgtg i colAng1.NW_012119221v1 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057919 41 - 5279953 I e aotNan1.NW_018493494v1 9352230 0 - 11631747 C e cebCap1.NW_016107439v1 6936223 2 - 7304997 I e saiBol1.JH378162 8151700 0 - 15139346 C e calJac3.chr3 52988189 0 - 190850796 C e otoGar3.GL873602 8588272 463 + 8790067 I e canFam3.chr13 47950307 210 + 63241923 I a score=40128.000000 s hg38.chr4_KI270787v1_alt 24880 6 + 111943 tctggc s panTro5.chr4 119587176 6 - 194502333 tctggc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121003449 6 - 195804263 tctggc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4434574 6 - 17550833 tctggc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69307380 6 - 118206036 tctggc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111512179 6 - 190429646 tctggc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110680305 6 - 189454096 tctggc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13248076 6 + 26754465 tctggc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4150791 6 - 5137665 tctggc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 55728 6 - 60632 tctggc i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1966032 6 + 2427316 tctggc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1252674 6 + 1448899 tctggc i colAng1.NW_012119221v1 C 0 C 0 s canFam3.chr13 47950517 6 + 63241923 tctctc i canFam3.chr13 I 210 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e dasNov3.JH568349 4057919 41 - 5279953 I e aotNan1.NW_018493494v1 9352230 0 - 11631747 C e cebCap1.NW_016107439v1 6936223 2 - 7304997 I e saiBol1.JH378162 8151700 0 - 15139346 C e calJac3.chr3 52988189 0 - 190850796 C e otoGar3.GL873602 8588272 463 + 8790067 I a score=123994.000000 s hg38.chr4_KI270787v1_alt 24886 13 + 111943 cATGTATCCTGAA s panTro5.chr4 119587182 13 - 194502333 cATGTATCCTGAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121003455 13 - 195804263 cATGTATCCTGAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4434580 13 - 17550833 cATGTATCCTGAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69307386 13 - 118206036 cATGTATCCTGAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111512185 13 - 190429646 cATGTATCCTGAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110680311 13 - 189454096 cATGTATCCTGAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13248082 13 + 26754465 cATGTATCCTGAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4150797 13 - 5137665 cATGTATCCTGAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 55734 13 - 60632 cATGTATCCTGAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1966038 13 + 2427316 cATGTATCCTGAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1252680 13 + 1448899 cATGTATCCTGAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52988189 13 - 190850796 CAAATATCTTGAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8151700 13 - 15139346 CAAATACCTTGAA i saiBol1.JH378162 C 0 C 0 s otoGar3.GL873602 8588735 13 + 8790067 CATGTAGCCTGAA i otoGar3.GL873602 I 463 C 0 s canFam3.chr13 47950523 8 + 63241923 cctGTATC----- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4057960 13 - 5279953 CATGTAGCTTGAA i dasNov3.JH568349 I 41 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e aotNan1.NW_018493494v1 9352230 0 - 11631747 C e cebCap1.NW_016107439v1 6936223 2 - 7304997 I a score=45927.000000 s hg38.chr4_KI270787v1_alt 24899 5 + 111943 TTTTG s panTro5.chr4 119587195 5 - 194502333 TTTTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121003468 5 - 195804263 TTTTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4434593 5 - 17550833 TTTTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69307399 5 - 118206036 TTTTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111512198 5 - 190429646 TTTTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110680324 5 - 189454096 TTTTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13248095 5 + 26754465 TTTTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4150810 5 - 5137665 TTTTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 55747 5 - 60632 TTTTG i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1966051 5 + 2427316 TTTTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1252693 5 + 1448899 TTTTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52988202 5 - 190850796 TTTTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8151713 5 - 15139346 TTTTA i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9352230 5 - 11631747 TTTTA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8588748 5 + 8790067 CATTG i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4057973 5 - 5279953 TGTCA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e cebCap1.NW_016107439v1 6936223 2 - 7304997 I e canFam3.chr13 47950531 0 + 63241923 C a score=4911117.000000 s hg38.chr4_KI270787v1_alt 24904 416 + 111943 AGATACAGTTGATAAATGATCAATTCTAATTGGAAGATTC-CTTTAGCATCAAAAGGTAAACTCATGTTATGTCATATTTATCCTTTGAACAAGATCTCCAAGGATTTGACCATGA-TCC----TCAAGTTAGACTTGAGGTCCAAGATGGCTGTGACCATGACATGTAC--CT--ACAGCCTCCCAGTAAGGAAGAGTGTCACCCATCGCCTCTTCTGTTGGAAA-------------------------CTTCTCTGCTCTCCTGAAACCCACAATGGATCATTTTAGGGAATTTAAATTAGCG---------------------TGGGCATGCCCATTGGTGTGCTCTGACATGTAACCAAAGGAGA---CAGGGAAAAG---TCAGAGTTG--AATgaatcctg-----gaatttcagaactggaagatgatgctt--gaaggtctaatcctctaaatgtacagatgagtaaacaggcagcca s panTro5.chr4 119587200 416 - 194502333 AGATACAGTTGATAAATGATCAATTCTAATTGGAAGATTC-CTTTAGCATCAAAAGGTAAACTCATGTTATGTCATATTTATCCTTTGAACAAGATCTCCAAGGATTTGGCCATGA-TCC----TCAAGTTAGACTTGAGGTCCAAGATGGCTGTGACTATGACATGTAC--CT--ACAGGCTCCCAGTAAGGAAGAGTGTCACCCATCGCCTCTTCTGTTGGAAA-------------------------CTTCTCTGCTCTCCTGAAACCCACAGTGGATCATTTTAGGGAATTTAAATTAGCG---------------------TGGGCATGCCCACTGGTGTGCTCTGACATGTAACCAAAGGAGA---CAGGGAAAAG---TCAGGGTTG--AATgaatcctg-----gaatttcagaactggaagatgatgctt--gagggtctaatcctctaaatgtacagatgagtaaacaggcagcca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121003473 416 - 195804263 AGATACAGTTGATAAATGATCAATTCTAATTGGAAGATTC-CTTTAGCATCAAAAGGTAAACTCATGTTATGTCATATTTATCCTTTGAACAAGATCTCCAAGGATTTGGCCATGA-TCC----TCAAGTTAGACTTGAGGTCCAAGATGGCTGTGACTATGACATGTAC--CT--ACAGGCTCCCAGTAAGGAAGAGTGTCACCCATCGCCTCTTCTGTTGGAAA-------------------------CTTCTCTGCTCTCCTGAAACCCACAGTGGATCATTTTAGGGAATTTAAATTAGCG---------------------TGGGCATGCCCACTGGTGTGCTCTGACATGTAACCAAAGGAGA---CAGGGAAAAG---TCAGGGTTG--AATgaatcctg-----gaatttcagaactggaagatgatgctt--gagggtctaatcctctaaatgtacagatgagtaaacaggcagcca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4434598 416 - 17550833 AGATACAGTTGATAAATGATCAATTCTAATTGGAAGATTC-CCTTAGCATCAAAAGGTAAACTCATGTTATGTCATATTTATCCTTTGAACAAGATCTCCAAGGATTTGACCATGA-TCC----TCAAGTTAAACTTGAGGTCCAAGATGGCTGTGACTATGACATGTAC--CT--ACAGCCTCCCAGTAAGGAAGAGTGTCACCCATCGCCTCTTCTGTTGGAAA-------------------------CTTCTCTGCTCTCCTGAAACCCACAATGGATCATTTTAGGGAATTTAAATTAGCA---------------------TGGGCATGCCCATTGGTGTGCTCTGACATGTAACCAAAGGAGA---CAGGGAAAAG---TCAGGGTTG--AATgaatcctg-----gaatttcagaactggaagatgatgctt--gagggtctaatcctctaaatgtacagatgagtaaacaggcagcca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69307404 415 - 118206036 AGATACAGTTGATAAATGATCAATTCTAATTGGAAGATTC-CTTTAGCATCAAAAGGTCAACTCA-GTTATGTCATATTGATCCTTTGAACAAGATCTCCACGGATTTGACCATGA-TCC----TCAAGTTAGACTTGAGGTCCAAGATGGCTGTTACTGTGACATATAC--CT--ACAGCCTCGCAGTAAGGAAGAGTGTCATCCATCGCCTCTTCTGTTGGAAA-------------------------CTTCTCTGCTCTCCTGAAACCCACAATGGATCATTTTAGGGAATTTAAATTAGCG---------------------TGGGCATGCCCATTGGTGTGCTCTGACATGTAACCAAAGGAGA---CAGGGAAAAG---TCAGGGTCG--AATgaatcctg-----gaatttcagaactagaagatgatgctt--gagggtctaatcctctaaatgtacagatgagtaaacaggcagcca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111512203 416 - 190429646 AGATACAGTTGATAAATGATCAATTTGAATTGGAAGATTC-CTTCAGCATCAAAAGATAAACGCATGTTATGTCATATTTATCCTTTGAACAAGATCTCCTTGGATTTGACCATGA-TCC----TCAAGTTAGACTTGAGGTCCAAGATGGCTGTGACTGTGACATGTAC--CT--ACAGCCTCCCAGTAAGGAAGAGTGTCACCCATCGCCTCTTCTGTTGGAAA-------------------------CTTCTCTGCTCTCCTGAAACCCATAGTGGATCATTTTAGGGAATTTAAATTAGCA---------------------TGAGTATGCCCATTGGTGTGCTTTGACATGTAACCACAGGGGA---TAGGGAAAAG---TCAGGGTTG--AATgaatcctg-----gaatttcagaactagaagatgatgctt--gagggcctaatcctctaaatgtacagatgagtaagcaggcagcca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110680329 416 - 189454096 AGATACAGTTGATAAATGATCAATTTGAATTGGAAGATTC-CTTCAGCATCAAAAGATAAACGCATGTTATGTCATATTTATCCTTTGAACAAGATCTCCTTGGATTTGACCATGA-TCC----TCAAGTTAGACTTGAGGTCCAAGATGGCTGTGACTGTGACATGTAC--CT--ACAGCCTCCCAGTAAGGAAGAGTGTCACCCATCGCCTCTTCTGTTGGAAA-------------------------CTTCTCTGCTCTCCTGAAACCCATAGTGGATCATTTTAGGGAATTTAAATTAGCG---------------------TGAGTATGCCCATTGGTGTGCTTTGACATGTAACCACAGGGGA---TAGGGAAAAG---TCAGGGTTG--AATgaatcctg-----gaatttcagaactagaagatgatgctt--gagggcctaatcctctaaatgtacagatgagtaagcaggcagcca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13248100 416 + 26754465 AGATACAGTTGATAAATGATCAATTTGAATTGGAAGATTC-CTTCAGCATCAAAAGATAAATGCATGTTATGTCATATTTATCCTTTGAACAAGATCTCCTTGGATTTGACCATGA-TCC----TCAAGTTAGACTTGAGGTCCAAGATGGCTGTGACTGTGACATGTAC--CT--ACAGCCTCCCAGTAAGGAAGAGTGTCACCCATTGCCTCTTCTGTTGGAAA-------------------------CTTCTCTGCTCTCCTGAAACCCATAGTGGATCATTTTAGGGAATTTAAATTAGCG---------------------TGAGTATGCCCATTGGTGTGCTTTGACATGTAACCACAGGGGA---TAGGGAAAAG---TCAGGGTTG--AATgaatcctg-----gaatttcagaactagaagatgatgctt--gagggcctaatcctctaaatgtacagatgagtaagcaggcagcca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4150815 416 - 5137665 AGATACAGTTGATAAATGATCAATTCTAATTGGAAGATTC-CTTCAGCATCAAAAGATAAACTCATGTTATGTCATATTTATCCTTTGAACAAGATCTCCATGGATTTGACCATGA-TCC----TCAAGTTAGACTTGAGGTCCAAGATGGCTGTGACTGTGACATGTAC--CT--ACAGCCTCCCAGTAAGGAAGAGTGTCACCCATCGCCTCTTCTGTTGGAAA-------------------------CTTCTCTGCTCTCCTGAAACCCATAGTGGATCATTTTAGGGAATTTAAATTAGTG---------------------TGAGTATGCCCATTGGTGTGCTTTGACATGTAACCACAGGAGA---TAGGGAAAAG---TCAGGGTTG--AATgaatcctg-----gaatttcagaactagaagatgatgctt--gagggtctaatcctctaaatgtacagatgagtaagcaggcagcca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 55752 416 - 60632 AGATACAGTTGATAAATGATCAATTCTAATTGGAAGATTC-CTTCAGCATCAAAAGATAAACTCATGTTATGTCATATTTATCCTTTGAACAAGATCTCCATGGATTTGACCATGA-TCC----TCAAGTTAGACTTGAGGTCCAAGATGGCTGTGACTGTGACATGTAC--CT--ACAGCCTCCCAGTAAGGAAGAGTGTCACCCATCGCCTCTTCTGTTGGAAA-------------------------CTTCTCTGCTCTCCTGAAACCCATAATGGATCATTTTAGGGAATTTAAATTAGTG---------------------TGAGTATGCCCATTGGTGTGCTTTGACATGTAACCAGAGGAGA---TAGGGAAAAG---TCAGGGTTG--AATgaatcctg-----gaatttcagaactagaagatgatgctt--gagggtctaatcctctaaatgtacagatgagtaagcaggcagcca i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1966056 416 + 2427316 AGATACAGTTGATAAATGATCAATTCTAATTGGAAGATTC-CTTCAGCATCAAAAGATAAACTCATGTTATGTCATATTTATCCTTTGAACAAGATCTCCATGGATTTGACCATGA-TCC----TCAAGTTAGACTTGAGGTCCAAGATGGCTGTGACTGTGACATGTAC--CT--ACAGCCTCCCAGTAAGGAAGAGTGTCACCCATCGCCTCTTCTGTTGGAAA-------------------------CTTCTCTGCTCTCCTGAAACCCATAGTGGATCATTTTAGGGAATTTAAATTAGTG---------------------TGAGTATGCCCATTGGTGTGCTTTGACATGTAACCACAGGAGA---TAGGGAAAAG---TCAGGGTTG--AATgaatcctg-----gaatttcagaactagaagatgatgctt--gagggtctaatcctctaaatgtacagatgagtaagcaggcagcca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1252698 416 + 1448899 AGATACAGTTGATAAATGATCAATTCTAATTGGAAGATTC-CTTCAGCATCAAAAGATTAACTCATGTTATGTCATATTTATCCTTTGAACAAGATCTCCATGAATTTGACCATGA-TCC----TCAAGTTAGACTTGAGGTCCAAGATGGCTGTGACTGTGATATGTAC--CT--ACAGCCTCCCAGTAAGAAAGAGTGTCACCCATCACCTCTTCTGTTGGAAA-------------------------CTTCTCTGCTCTCCTGAAACCCACATTAGATCATTTTAGGGAATTTAAATTAGCA---------------------TGAGTATGCCCATTGGTGTGCTTTGACATGTAACCAGAGGAGA---TAGGGAAAAG---TCAGGGTTG--AATgaatcctg-----gaatttcagaactagaagatgatgctt--gagggtctaatcctctaaatgtacagatgagtaagcaggcagcca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52988207 412 - 190850796 AGATACAGTTGATAAGCAATCAAGTCTAATTGGAAGATTC-CTTTAGCATCAAAAGGTAAACTCGTGTTATGTCATGTTTATCCTTTGAACAAGATATCCAGGGATTTGACCATGA-TCT----TCAGGTCAGACTTGAAATCAAAGATGGCTATGACTGTGACATGTAC--CT--ACAGCCTCCAAGCA-ACAAGAGTGTCACCCATCA---CTTCCGTTGGAAA-------------------------CATCTCTGCTCTCCTTAAACCCACAATGGATCATTTTAGGAAATTTAAATTAGCT---------------------TGGGCATGCCCGTTTGTGTGCTCTGACATGGAACCAAAGGAGA---TAGAGAAAAG---GCAGGGTTG--AATAaatcatg-----gaattacagaactagaagttgatgctt--gaggatctaatcctctaaatgtacagatgagtaaacaggcAGCAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8151718 392 - 15139346 AGATATAGTTGATAAACAATCAAGTCTAATTGGAAGATTC-CTTTAGCATCAAAAGGTAAATTCATGTAATGTCATGTTTATCCTTTGAACAAGATCTCTGGGGATTTGACCATGA-TCC----TCAGGTCAGACTTGAGATCCAAGATGGCTGTGACTGTGACATGTAC--CT--ACAGCCTCCAAGCA-AGGAGAGTGTCACCGATCACTTCTTCTGTTGGAA------------------------------------------------ACGATGGATCATTTTAGGAAATTTAAATTAGCT---------------------TGGGCATGCCCATTTGTGTGCTCTGACATGTAACCAAAGGAGA---TAGAGAAAAG---GCAGGGTTG--AAagaatcatg-----gaattacagagctagaagttgatgctt--gaggatctaatcctctaaatgtacagaggaataaacGGGCAGCAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6936225 415 - 7304997 AGATACAGTTGATAAACAATCAAGTCTAATTGGAAGATTC-CTTTAGCATCAAAAGGTAAACTCATGTTATGTCATGTTTATCCTTTGAACAAGATCTCCACAGATTTGACCATGA-TCC----TCAGGTCAGCCTTGAGGTCCAAGATGGCTGTGACTGTGACACGTAC--CT--ACAGCCTCCAAGCACGGAAGAGTGTCACCCATCACTTCTTCTGTTGGAAA-------------------------CGTCTCTGCTCTCCTTAAACCCACAATGGATCATTTTAGGAAATTTAAATTAGC----------------------TAGGCATGCCCATTTTTGTGCTCTGACATGTAATCAAAGGAGA---TAGAGAAAAG---GCAGAGTTG--AATgaatcatg-----gaattacagaactagaagttgatgctt--gaggatctaatcctctaaatgtacagatgaaaaaacaggcAGCAA i cebCap1.NW_016107439v1 I 2 C 0 s aotNan1.NW_018493494v1 9352235 415 - 11631747 AGATACAGTTGATAAACAATCAAGTCTAATTGGAAGATTC-CTTTAGCATCAAAAGGTAAACTCATGTTATGTCATGTTTATCCTTTGAACAAGATCTCCAGGGA-TTGACCATGA-TCCTCATTCATGTCAGACTTGAGGTCCAAGATGGCTGTGACTGTGACATGTAC--CT--ACAGCCTCCAAGCA-AGGAGAGTGTCACCCATCA---CTTCTGTTGGAAA-------------------------CATCTCTGCTCTCCTTAAACCCACAATGGATCATTTTAGGAAATTTAAATTAGCT---------------------TGGGCATGCCCATTTGTGTGCTCTGACATGTAACCAAAGGAGA---TAGAGAAAAG---GCAGGGTTG--AATgaatcatg-----gaattacagaactagaagttgatgctt--gaggatctaatcctctaaatgtacagatgagtaaacaggcAGCAA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8588753 412 + 8790067 AGATATAGTTGATAAATGGTAAATTCTAATTGGAA-ATTT-CTTTAGAATCAGAAGGCAaagtcagatcatgtcatattcaccctttgaacaagatctccaataatctgatcccag-ccc----acaggtcagagtagaggtcaaagATATCTGTGACTGGGACAGGCAC--CT--GCTGATGCCC------CAACAGTGTTGCCCTTCACCTCTTTTGTTGGAAA-------------------------TTTCCCTGCTGCCCTCAAACCCACAGCAGATCATTTTAGGAAATTTAAG-TAGCA---------------------TTCAGATGCTTGTTGATGGTCTCTGAAACATAACCAGAGGAGA---CAGAGAAAAGGCAGCAGAACTGTCAGTgaatctga-----gaatct-agagctggaaactgatgctt--gagggtctaattctctaaatttacaggtgaggaaacAGTCAGCAA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47950531 385 + 63241923 ---------taataaataaataa----aatttaaGA---------------AAAAGGAAAATCCACGTCTTGCTATATTTATCCTCTAAGCAAGGTTGCCCACAAATTGAACATGAGCCC----ACAGGTCAGACTTGAGGTCTAAGATGGCTGTGACTGTGACATGAAC--TTGAAGAGATTCCCAGCA-GCAGCAGTATTACCTATCAGCTCTTC---GGAAGA-------------------------CTTCTCTACTCTCCC-AAACTCATAACAGATCATTCTCAGAAATTTAAATTAGTT---------------------TAGGGATGTCTGCTGGTGTCCTCTGAAA-ATGACCAAAGGAGA---TAGAAGAAAG-----------A--AGGGAGACCTGTCAATGAATTTCAGAGCTAAAATTTGATGCTTAAGGGGGTCTAACACTCTAAATTTACAGGTGAGAAAACAGGTGGCAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4057978 466 - 5279953 AGATACAGCTGATAAATGATCAGTTGTAACTGGAACATTCTTTTTAACATGAAAAGATAAGTTTGTTTCATGGAATGTTTATCCTTCGGGCAAAATCTCCAACAAGTTGACCAAGA-GCC-----AAGGTCAGACTTGAGATCCAAGATGACTGTGACAAGGACATGTGCTTCT--AGAGATTCCCAGCAGGCAATAGCGCTGCCCGT-ACTTCTCCCATTGAAAACTATTTTATCTCCCTTTATCACTTTCTTCTCTGATCTCCC-CAGCCCACCACATATCATTTTAGGAAATCTTAATTAGCAAAGAAGCTTGAATCAAAGGTTTGGAGACACCCACTGGGGTCCCCCGAAAC-TAATTGGAGAGGAATGGAGGAAAAAA---GGACAACTGTCAATGAATTTGG-----TAATTTTAGAGCTAGAAGTTGGTATGT--GGAGAGCTAACCCACTAAATGTACAGTTGAAGAAACAAACAGCCA i dasNov3.JH568349 C 0 I 457 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I a score=1408914.000000 s hg38.chr4_KI270787v1_alt 25320 119 + 111943 aataaataaaTAAAAATGTAA--GCAACTTACTAAAAACCACATTTGTGGAGTTTCCCTGTACTCTATGT-CAGATGATAGCCTG--A---CCTTTAATTCC-T-CCATAATGATGGATTGCTTCATCC s panTro5.chr4 119587616 119 - 194502333 aataaataaaTAAAAATGTAA--GCAACTTACTAAAAACCACATTTGTGGAGTTTCCCTGTACTCTATGT-CAGATGATAGCCTG--A---CCTTTAATTCC-T-CCATAATGATGGATTGCTTCATCC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121003889 118 - 195804263 aataaataaaTAAAAATGTAA--GCAACTTACT-AAAACCACATTTGTGGAGTTTCCCTGTACTCTATGT-CAGATGATAGCCTG--A---CCTTTAATTCC-T-CCATAATGATGGATTGCTTCATCC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4435014 119 - 17550833 aataaatacataaaaatgtaa--gcaacttactaaaaaccacaTTTGTGGAGTTTCCCTGTACTCTATGT-CAGATGATAGCCTG--A---CCTTTAATTCC-T-CCGTAATGATGGATTGCTTCATCC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69307819 119 - 118206036 aataaataaaCAAAAATGTAA--GCAACTTACTAAAAACCACATTTGTGGAGTTTCCCTGTACTCTACAT-CAGATGATAGCCCG--A---CCTTTAATTCC-T-CCATAATGATGGATTGCTTCATCC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111512619 118 - 190429646 aacaaataaaTAAAAATATAA--GCAACTTACTAAAAACCACATTTGTGGA-TTTCCCTGTACTCTACGT-CAGATGATAGCCTG--A---CCTTTAATTCC-T-CCATAATGATGGATTGCTTCATCC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110680745 118 - 189454096 aataaataaaTAAAAATATAA--GCAACTTACTAAAAACCACATTTGTGGA-TTTCCCTGTACTCTACGT-CAGATGATAGCCTG--A---CCTTTAATTCC-T-CCATAATGATGGATTGCTTCATCC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13248516 118 + 26754465 aataaataaaTAAAAATATAA--GCAACTTACTAAAAACCACATTTGTGGA-TTTCCCTGTACTCTACGT-CAGATGATAACCTG--A---CCTTTAATTCC-T-CCATAATGATAGATTGCTTCATCC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4151231 119 - 5137665 aataaataaaTAAAAATATAA--GCAACTTACTAAAAACCACATTTGTGGAGTTTCCCTGTACTCTACGT-CAGATGATAGCCTG--A---CCTTTAATTCC-T-CCATAATGATGGATTGCTTCATCC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 56168 119 - 60632 aataaataaaTAAAAATATAA--GCAACTTACTAAAAACCACATTTGTGGAGTTTCCCTGTGCTCTACGT-CAGATGATAGCCTG--A---CCTTTAATTCC-T-CCATAATGATGGATTGCTTCATCC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1966472 119 + 2427316 aataaataaaTAAAAATATAA--GCAACTTACTAAAAACCACATTTGTGGAGTTTCCCTGTACTCTACGT-CAGATGATAGCCTG--A---CCTTTAATTCC-T-CCGTAATGATGGATTGCTTCATCC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1253114 119 + 1448899 aataaataaaTAAAAATATAA--GCAACTTACTAAAAACCACATTTGTGGAGTTTCCCTGTACTCTACGT-CAGATGATAGCCTG--A---CCTTTAATTCC-T-CCATAATGATGGATTGCTTCATCC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52988619 119 - 190850796 AATAAATAAATAAAAACATAA--GCAACTTACTAAAAACCACATTTGTGGAGTTTCCCTGTACTCTACTT-CAGATGATAGCCTG--A---CCTTTAATTCT-T-CCATAATGCTGGATTGCTTCATCC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8152110 119 - 15139346 AATAAATAAATAAAAACACAA--GCAACTTACTAAAAACTACATTTGTGTAGTTTCCCTGTACTCTACTT-CAGATGATAGCCTG--A---CCTTTAATTCT-T-CCATAATGATGGATTGCTTCATTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6936640 119 - 7304997 AATAAATAAATAAAAACACAA--GCAACTTACTCAAAACCACATTTGTGTAGTTTCCCCGTACTCTACTT-CAGATGATAGCCTG--A---CCTTTAATTCT-T-CCATAATGATGGATTGCTTCATCC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9352650 119 - 11631747 AATAAATAAATAAAAACACAC--GCAACTTACTAAAAACCACATTTGTGTAGTTTCCCCGTACTCTACGT-CAGATGATAGCCTG--A---CCTTTAATTCT-T-CCATAATGATGGATTACTTCATCC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8589165 107 + 8790067 AA-------AGAAAAACGTAA--GCAATTTACTGAAAACCATGTAAGTGGGGTTTCCTTGGATTCTGCTTGAAAATGATAACCTGTTC---CTCTCAGTTCC-T-CCT--GTAATGGATTGCT------ i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47950916 113 + 63241923 AA---GTAAACAAAAAAATAA--GCAACTTACTGAAAACCACATTAATGGA-TTTTCCTGGACCCTATCT-CAAATAATAGTCCC--ACACCTTTTAATTCCTT-CTGTAATGTTGGATTGCT------ i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4058901 119 - 5279953 AATGAATGAATAAATATATAAATGCAACTTACCAGAAACCATTTGAAAAGGATTTCTGTGGACCCTATTT-CAAATGATATTCTT--GCTCCTTTTAACTTC-TACTATAATTATGATTTGCC------ i dasNov3.JH568349 I 457 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e micMur3.chrUn_NW_017968520v1 1754899 1581 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I a score=4390876.000000 s hg38.chr4_KI270787v1_alt 25439 360 + 111943 ATCCTTCCATACACCA------GG-AAAAAACAAACTAATTAGATGCATATTTTCTATCTACTGAATGGCAAAAGGGATTCTTGGAGTGGGGCAGCAGGCAATTTGGGCTCTTGCAATTTTCCTTATAATTATGTCATTTAAAATTTTTAATCTGTCTTCTCTATTGAGATGTCTTCACTGGTAATGAATAATGAC--AGATGCAAACTTTTTAACTAGAATTTCATATGTTATGG--------------------------------------------------AAATACTGAC------ACTCAAGAGTTGAAGAAAACTCACTGGTGTTTTTGCTGATAAAATACATAATTTGCTT---------------------TTAGTTGCTCCTAGATTTTTATGTTGTATATACCAG----TACAAAAAGAAATAACTGA--CATA--ATT-GTA s panTro5.chr4 119587735 360 - 194502333 ATCCTTCCATACACCA------GG-AAAAAACAAACTAATTAGATGCATATTTTCTATCTACTGAATGGCAAAAGGGATTCTTGGAGTGGGGCAGCAGGCAATTTGGGCTCTTGCAATTTTCCTTATAATTATGTCATTTAAAATTTTTAATCTGTCCTCTCTATTGAGATGTCTTCACTGGTAATGAATAATGAC--AGATGCAAACTTTTTAACTAGAATTTCATATGTTATGG--------------------------------------------------AAATACTGAC------ACTCAAGAGTTGAAGAAAACTCACTGGTGTTTTTGCTGATAAAATACATAATTTGCTT---------------------TTAGTTGCTCCTAGATTTTTATGTTGTATATACCAG----TACAAAAAGAAATAACTGA--CATA--AGT-GTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121004007 359 - 195804263 ATCCTTCCATACACCA------GG--AAAAACAAACTAATTAGATGCATATTTTCTATCTACTGAATGGCAAAAGGGATTCTTGGAGTGGGGCAGCAGGCAATTTGGGCTCTTGCAATTTTCCTTATAATTATGTCATTTAAAATTTTTAATCTGTCCTCTCTATTGAGATGTCTTCACTGGTAATGAATAATGAC--AGATGCAAACTTTTTAACTAGAATTTCATATGTTATGG--------------------------------------------------AAATACTGAC------ACTCAAGAGTTGAAGAAAACTCACTGGTGTTTTTGCTGATAAAATACAGAATTTGCTT---------------------TTAGTTGCTCCTAGATTTTTATGTTGTATATACCAG----TACAAAAAGAAATAACTGA--CATA--AGT-GTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4435133 361 - 17550833 ATCCTTCCATACACCA------GGAAAAAAACAAACTAATTAGATGCATATTTTCTATCTGTTGAATGGCAAAAGGGATTCTTGGAGGGGGGCAGCAGGCAATTTGGGCTCTTGCAATTTTCCTTATAATTATGTCATTTAAAATTTTTAATCTGTCCTCTCTATTGAGATGTCTTCACTGGTAATGAATAATGAC--AGATGCAAACCTTTTAACTAGAATTTCATATGTTATGG--------------------------------------------------AAATACTGAC------ACTCAAGAGTTGAAGAAAATTCACTGGTGTTTTTGCTGATAAAATACATAATTTGCTT---------------------TTAGTTGCTCCTAGATTTTTATGTTGTATATACCAG----TACAAAAAGAAATAACTGA--CATA--AGT-GTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69307938 360 - 118206036 ATCCTTCCATACACCA------GG-AAAAAACAAACTAATTAGATGCATCTTTTCTATCTACTGAATGGCAAAAGGGATTCTTGGAGGGGGGCAACAGGCAATTTGGGCTCTTGCAATCTTCCTTATAATTATGTCATTTAAAATTTTTAACCTGTCCTCTCTATTGAGATGTCTTCGCTGGTAATGAATAATGAC--AGATGCAAACTTTTTAACTAGAATTTCATATATTATGG--------------------------------------------------AAATACTGAC------TCTCAAGAGTTGAAGAAAACTCACTGGTGTTTTTGCTGATAAAATACATAATTTGCTT---------------------TTAGTTGCTCCTAGATTTTTATGTTGTATATACCAG----TACAAAAAGAAATAACTGA--CATA--AGT-GTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111512737 358 - 190429646 ATTCTTCCATACACCA------GG-AAAAAACAAACTAATTAGATGCATCTTTTCTATCTACTGAATGGCAAAAGGGATTCTTGGAGGGGGGCCCCAGGCAGTTTGGGCTCTTGCAATCTTCCTTATAATTATGTCATTTAAAATTTTTAATCTGTC--CTCTATTGAGATGTCTTCACTGGTAATGAATGATGAC--AGATGCAAACTTACTAACTAGAATTTCATATGTTATGG--------------------------------------------------AAATACTGAC------TCTC-AGAGATGAAGAAAACTCATTGGTGTTTTTGCTGATAAAGTACATAATTTGCTT---------------------TTAGTTGCTCCTAGATTTTTATGTTGTATATACCAG----CACAAAAAGAAATAACTAA--CATA--AGTAGTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110680863 358 - 189454096 ATTCTTCCATACACCA------GG-AAAAAACAAACTAATTAGATGCATCTTTTCTATCTACTGAATGGCAAAAGGGATTCTTGGAGGGGGGCCCCAGGCAGTTTGGGCTCTTGCAATCTTCCTTATAATTATGTCATTTAAAATTTTTAATCTGTC--CTCTATTGAGATATCTTCACTGGTAATGAATGATGAC--AGATGCAAACTTACTAATTAGAATTTCATATGTTATGG--------------------------------------------------AAATACGGAC------TCTC-AGAGATGAAGAAAACTCATTGGTGTTTTTGCTGATAAAGTACATAATTTGCTT---------------------TTAGTTGCTCCTAGATTTTTATGTTGTATATACCAG----CACAAAAAGAAATAACTGA--CATA--AGTAGTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13248634 358 + 26754465 ATTCTTCCATACACCA------GG-AAAAAACAAACTAATTAGATGCATCTTTTCTATCTACTGAATGGCAAAAGGGATTCTTGGAGGGGGGCCCCAGGCAGTTTGGGCTCTTGCAATCTTCCTTATAATTATGTCATTTAAAATTTTTAATCTGTC--CTCTATTGAGATATCTTCACTGGTAATGAATGATGAC--AGATGCAAACTTACTAATTAGAATTTCATATGTTATGG--------------------------------------------------AAATACGGAC------TCTC-AGAGATGAAGAAAACTCATTGGTGTTTTTGCTGATAAAGTACATAATTTGCTT---------------------TTAGTTGCTCCTAGATTTTTATGTTGTATATACCAG----CACAAAAAGAAATAACTGA--CATA--AGTAGTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4151350 358 - 5137665 ATCCTTCCATACACCA------GG-AAAAAACAAACTAATTAGATGCATCTTTTCTatctactgaatggcaaaagggattcttggaggggggccccaggcaatttgggctcttgcaatcttccttataattatgTCATTTAAAATTTTTAATCTGTC--CTCTATTGAGATATCTTCACTGGTAATGAATAATGAC--AGATGCAAACTTACTAACTAGAATTTCATATGTTATGG--------------------------------------------------AAATACTGAC------TCTC-AGAGATAAAGAAAACTCATTGGTGTTTTTGCTGATAAAGTACATAATTTGCTT---------------------TTAGTTGCTCCTAGATTTTTATGTTGTATATACCAG----CACAAAAAGAAATAACTGA--CATA--AGTAGTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 56287 358 - 60632 ATCCTTCCATACACCA------GG-AAAAAACAAACTAATTAGATGCATCTTTTCTATCTACTGAATGGCAAAAGGGATTCTTGGAGGGGGGCCCCAGGCAGTTTGGGCTCTTGCAATCTTCCTTATAATTATGTCATTTAAAATTTTTAATCTGTC--TTCTATTGAGATGTCTTCACTGGTAATGAATGATGAC--AGACGCAAACTTACTAACTAGAATTTCATATGTTATGG--------------------------------------------------AAATACTGAC------TCTC-AGAGATGAAGAAAACTCATTGGTGTTTTTGCTGATAAAGTACATAATTTGCTT---------------------TTAGTTGCTCCTAGATTTTTATGCTGTATACACCAG----CACAAAAAGAAATAACTGA--CATA--AGTAGTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1966591 358 + 2427316 ATTCTTCCATACATCA------GG-AAAAAACAAACTAATTAGATGCATCTTTTCTATCTACTGAATGGCAAAAGGGATTCTTGGAGGGGGGCCCCAGGCAGTTTGGGCTCTTGCAATCTTCCTTATAATTATGTCATTTAAAATTTTTAATCTGTC--CTCTATTGAGATGTCTTCACTGGTAATGAATGATGAC--AGATGCAAACTTACTAACTAGAATTTCATATGTTATGG--------------------------------------------------AAATACTGAC------TCTC-AGAGATGAAGAAAACTCATTGGTGTTTTTGCTGATAAAGTACATAATTTGCTT---------------------TTAGTTGCTCCTAGATTTTTATGTTGTATATACCAG----CACAAAAAGAAATAACTGA--CATA--AGTAGTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1253233 352 + 1448899 ATCCTTCCATACACCA------GG-AAAAAACCAAC----TAGATGCATCTTTTCTATCTAATGAATGGCAAAAGAGATTCTTGGAGGGGGGCCCTGGGCAATTTGGGCTCTTGCAATCTTCCTTATAATTATGTCATTTAAAATTTTTAATCTGTC--CTCTATCGAGATGTCTTCACTGGTAATGAATAATGAC--AGATGCAAACTTACTAACTAAAATTTC--ATGTTATGG--------------------------------------------------AAATACTGAC------TCTC-AGAGATGAAAAAAACTCATTGGTGTTTTTGCTGATAAAGTACATAATTTGCTT---------------------TTAGTTGCTCCTAGATTTTTATGTTGTATATACCAG----CACAAAAAGAAATAACTGA--CATA--AGTAGTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52988738 349 - 190850796 ATTCTTCCATACACCA------GG-AAAAAACAAACCAATTAGACACATCTTTTCTGTCTACTGAATGGC-AAAGGGATTCTTGGAGGGAGACAGCAGGCAATTTGGGATCTTGCAATCTTCCTTATAATTATATCATTGAAAAATTTTCATCTGACCTCTCTATTGAGATGTCTTCACTGGT-ATGAATAATGAC--ATATGCAAACTTATTAACTAGAATTTCACATGTTATGG--------------------------------------------------AAATACTGAC------TC---AAAGTTGAAGAAAACTCATTGATCTTTTTGGTG-------ATATAATTTGTTT---------------------TTAGTTGCTCCTAGATTTTTATGTTGTATCTACCAG----TATAAAAAGAAATAACTGA--CATA--AGTAGTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8152229 347 - 15139346 TTACTTCCACACACAA------GG-AAAAAACAAACCAATTAGATACATCTTTTCTATCTACCGAATGGC-AAAGGGATTCTTGGAGGGAGACAGCAGGCAATTTGGGATCTTGCAATCTTCCttataattatatcatttaaattttttaatCTGTCCTCTCTATTGAGACGTCTTCACTGGT-ATGAATAATGAC--ATATGCAAACTTATTAACTAGAATTTCACA--TCATGG--------------------------------------------------AAATACTGAC------TC---AAAGTTGAAGAAGGCTCATTGATCTTTTTGGTG-------ACATAATTTGTTT---------------------TTAGTTGCTCCTAGATTTTTATGTAGTATCTACCAG----TATAAAAAGAAATAACTGA--TATA--AGTAGTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6936759 347 - 7304997 ATCCTTCCACACGCCA------GG-AAAAAACAAACCAATTAGATACATCTTTTCTATCTACTGAATGGC-AAAGGGATTCTTGGAGGGAGACAGCAGGCAATTTGGGATCTTGCAATCTTCCTTATAATTACATCATTTAAAATTTTTAATCTATCCTCTCTATTGAGATGTCTTCACTGGT-ATGAATAATGAC--ATATGCAAACTTATTAACTAGAATTTCACG--TTATGG--------------------------------------------------AAATACTGAC------TC---AAAGTTGAAGAAAGCTCATTGATCTTTTTGGTG-------ACATAATTTGTTT---------------------TTAGTTGCTCCTAGATTTTTATGTTGTATCTACCAG----TATAAAAAGAAATAACTGA--CATA--AGTAGTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9352769 348 - 11631747 ATCTTTCCACACACCA------GG-AAAAAACAAACCAATTAGATACATCTTTTCTATCTACTGAATGGC-AAAGGGATTCTTGGAGGGAGACAGCAGGCAATTTGGGATCTTGCAATCTTCCTTATAATTATATCATTTAAAATTTTT-ATCTGTCCTCTCTATTGCGATGCCTTCACTGGT-ATGAATAATGAC--ATATGCAAACTTATCAACTAGAATTTCACATGTTATGG--------------------------------------------------AAATACTGAC------TC---AAAGTTGAAGAAAACTCATTGATCTTTTTGGTG-------ACATAATTTGTTT---------------------TTAGTTGCTCCTAGATTTTTATGTTGTATCTACCAG----TATAAAAAGAAATAACTGA--CATA--AGTAGTA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1756480 364 + 3286835 ATCCTTCCCTACATCA------GG-GAAAACCAGACTAATTAGACACGTTTTCTCTGTCATCTGAATGGCAAAAGGGAATCTTGCAGGGAGACAGCAGGCAATTTTGGATCTGTTGATCTTCCTTATAATTATGTCATTTTTAATTTTTAATCTGACCTCTCTTTTTACATGTCTTCATTGGTCATGAATAATGAAAGAGATGCATATTTACTAACTAAAATTTCACATTTTATGG--------------------------------------------------AAGTCCTGGC------TCTT-AAAGTTGAAGAAAACTTATTGATCTTTTTATGGATAAAGTACATAATTTGTTT---------------------TTAGTTGCTCCTAGATTTTTATACTATATCTACCAG----CACCAAAAAAAAAAAAAAAACCCCA--AACAGTT i micMur3.chrUn_NW_017968520v1 I 1581 C 0 s otoGar3.GL873602 8589272 351 + 8790067 ATCCTTCCCTACACCA------GG-G-AAACCAAACTAATTAGACACATCATTTCTGTCACCTGAATGGCAAAAGGGATTCTTGCAGAGAGACAGCAGGCAATTTGGGATGTGGTTATATTCCTTATAATCATATTGTTTTTAATTTTTAATCTGACTTCTCCTTTTACATGTCTGCATTGGCAATTAATAATGAAAGAGAGGCACATTT----GCTAAAATTTCACATGTTATGG--------------------------------------------------AAGCACTGAT------TCTC-AAAGTTCGAGAAAACTCATTGATCTTTTGGCTAGTGAAGTACATAATTTGTTT---------------------TCAGTTGCCACTAGATGTTTATATTGTGTCTACCATACTCCCCCAAA--------------CCCAGGAATAGTT i otoGar3.GL873602 C 0 I 4 s canFam3.chr13 47951029 393 + 63241923 ATCTTTCCATACACAATTATATAC-AAGGAGCAAACCAATTATATACATCTTTTCTAACACCCGAATGATAAAAGGAATTTTCACAGAG----ATCTGGCCACTTAGGATCTGGCAATCTGCCTTATAATTACGTCATTTAAAATTTTTAATCTGACCTCTCTTTTTCCATGACTTGATTGGTTATGAATAATGACAGGGATGCAAATTTTCTAACTAAAATTTCACATATTATGGAAATAAGCCTGGTGGGTGAACAACAACAAAATTTTTTTTTAACAACAACAAAATATTGACAAATAGTCTC-ATATTTGAAGGAAATTCATTAATCTTTTTGTTGATAAAGTATATCATTTGTTT---------------------TTAGTTGCTCCTAGATTTTTATGCTGTATCAATCAG----TGG------------------------------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4059020 362 - 5279953 ATCCTTTCATACACAA------AT----------------TAGATACAAATTTTCTATTACCCGAATGGCAAAAGGGGTTCTTGCAGGGGGACAGCAGGCCGTCTGGGATTTGGCAATTTTCCTTATCATTATGTCATTTTAAAATTTTAACCTGATCTCTCTTTTTCCTTATCTTCACTGATCATGAATAATGACAAAGATGCAAATTTACTAACTA-AGTTTGACATATTATGGGATTAAGCCTGGAAAAAAG-------------------------------TAATACTTTT------TCTG-AGAGTTGAAGAAAACTCATTGATCTTTTTGTTGATGGAACACATAATTTGTTTTTTTACTTATTCCTTTCTTTCTTATTTGCTCCTATATTTTGATATTATATCAACCAC----------------TTAGTG---------------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1834011 1915 + 4188776 M e mm10.chr5 76394611 938 + 151834684 I a score=5998654.000000 s hg38.chr4_KI270787v1_alt 25799 411 + 111943 CCTGATTTGCTAAATAACTAGCAATCATGGCAATAGTTTGAT---AACAGT---ATGACAGATAGGAAGAAAAGCAGCAGCTATTCTATATAGTCTGTGAGGACC-----------------------------------AGAAAGTGAAATCTATGCTCTTTACTGT-AGCTGAATGCATAGATCCCAATA-AAAATGGCATAGGTATCAATAAAATGAGAAATGAATTGATTCCTAGATTCAAGGCCAAGTGCTTCTTGTAAGCCACCTCAAACCATTTTGTGAAACAGATCAAGGTGTAGATAAATGCATGCACACGCAGCACATTCATATATACACATA-AAACTATTTTTCTCTTTCACTTCACCATCATTCattcaatttattcaacaaat-ttttacttcatgcctaccaagtaccaggcactcgtgtgagtaac--agcagcaaacaaga s panTro5.chr4 119588095 411 - 194502333 CCTGATTTGCTAAATAACTAGCAATCATGGCAATAGTTTGAT---AACAGT---ATGACAGATAGGAAGAAAAACAGCAGCTATTCTATATAGTCTGTGAGGACC-----------------------------------AGAAAGTGAAATCTATGCTCTTTACTGT-AGCTGAATGCATAGATCCCAATA-AAAATGGCATAGGTATCAATAAAATGAGAAATGAATTGATTCCTAGATTCAAGGCCAAGTGCTTCTTGTAAGCCACCTCAAACCATTTTGTGAAACAGATCAAGGTGTAGATAAATGCATGCACACGCAGCACATTCATATATACACATA-AAACTATTTTTCTCTTTCACTTCACCATCATTCattcaatttattcaacaaat-ttttacttcatgcctatcaagtaccaggcactcgtgtgagtaac--agcagcaaacaaga i panTro5.chr4 C 0 C 0 s panPan2.chr4 121004366 411 - 195804263 CCTGATTTGCTAAATAACTAGCAATCATGGCAATAGTTTGAT---AACAGT---ATGACAGATAGGAAGAAAAACAGCAGCTATTCTATATAGTCTGTGAGGACC-----------------------------------AGAAAGTGAAATCTATGCTCTTTACTGT-AGCTGAATGCATAGATCCCAATA-AAAATGGCATAGGTATCAATAAAATGAGAAATGAATTGATTCCTAGATTCAAGGCCAAGTGCTTCTTGTAAGCCACCTCAAACCATTTTGTGAAACAGATCAAGGTGTAGATAAATGCATGCACACGCAGCACATTCATATATACACATA-AAACTATTTTTCTCTTTCACTTCACCATCATTCattcaatttattcaacaaat-ttttacttcatgcctatcaagtaccaggcactcgtgtgagtaac--agcagcaaacaaga i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4435494 408 - 17550833 CCTGATTTGCTAAATAACTAGCAATCATGGCAATAGTTTGAT---AACAGT---ATGACAGATAGGAAGAAAAGCAGCAGCTATTCTATATAGTCTGTGAGGACC-----------------------------------AGAAAGTGAAATCTATGCTCTTTATTGT-AGCTGAATGCATAGATCCCAATA-AAAGTGGCATAGGTATCAATAA---GAGAAATGAATTGATTCCTAGATTCAAGGCCAAGTGCTTCTTGTAAGCCACCTCAAACCATTTTGTGAAACAGATCAAGGCATAGATAAATGCATGCACATGCAGCACATTCATATATACACATA-AAACTATTTTTCTCTTTCACTTCACCATCATTCattcaatttattcaacaaat-ttttacttcatgcctatcaagtaccaggcactcgtgtgagtaac--agcagcaaacaaga i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69308298 407 - 118206036 CCTGATTTGCTAAATAACTAGCAATCATGGCAATAGTTTGAT---AACAAT---ATGAC----AGGAAGAAAAGCAGCAGCTATTCTATATAGTCTGTGAGGACC-----------------------------------AGAAAGTGAAATCTATGCCCTTTACTGT-AGCTGAATGCCTAGATCCCAGTA-AAAATGGCATAGGTATCAATAAAATGAGAAATGAATTGATTCCTAGATTCAAGGCCAAGTGCTTCTTGTAAGCCACCTCAAACCATTTTGTGAAACAGATCAAGGCGTAGATAAATGCACGCACACACAGCACATTCATATATATACATA-AAACTATTTTTCTCTTTCACTTCACCATCATTCattcaatttattcaacaagt-ttttactgcatgcctactgagtaccaggcactcgtgtgagtaac--agcagcaaacaaga i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111513095 411 - 190429646 CCTGATTTGATAAATAACTAGCAATCATGGTAATAGTTTGAT---AACAGT---ATGACAGATAAGAAGAAAAGAAGCAGCTATTCTATATAGTCTGTGAGGACC-----------------------------------AGAAAGTGAAATCTATGCCCTTTACTGT-AGCTGAATGCATAGATCCCAATA-AAAATGGCATAGGTATCAATAAAACGAGAAATGAATTGATTCCTAAATTCAAGGCCAAGTGCTTCTTGTAAGCCACCTCAAACCATTTTGTGAAACAGATCAAGGCATAGGTAAATGCATGCACACACAGCACATTCATATACACACATA-AAACTATTTTTCTCTTTCACTTCACTCTCATTCattcaatttattcaacaaat-ttttactgcatgcctaccaagtgccaggcactcatgtgagtcac--agcagcaaacaaga i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110681221 411 - 189454096 CCTGATTTGATAAATAACTAGCAATCATGGTAATAGTTTGAT---AACAGT---ATGACAGATAAGAAGAAAAGAAGCAGCTATTCTATATAGTCTGTGAGGACC-----------------------------------AGAAAGTGAAATCTATGCCCTTTACTGT-AGCTGAATGCATAGATCCCAATA-AAAATGGCATAGGTATCAATAAAACGAGAAATGAATTGATTCTTAAATTCAAGGCCAAGTGCTTCTTGTAAGCCACCTCAAACCATTTTGTGAAACAGATCAAGGCATAGGTAAATGCATGCACACACAGCACATTCATATACACACATA-AAACTATTTTTCTCTTTCACTTCACTCTCATTCattcaatttattcaacaaat-ttttactgcatgcctaccaagtgccaggcactcatgtgagtcac--agcagcaaacaaga i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13248992 411 + 26754465 CCTGATTTGATAAATAACTAGCAATCATGGTAATAGTTTGAT---AACAGT---ATGACAGATAAGAAGAAAAGAAGCAGCTATTCTATATAGTCTGTGAGGACC-----------------------------------AGAAAGTGAAATCTATGCCCTTTACTGT-AGCTGAATGCATAGATCCCAATA-AAAATGGCATAGGTATCAATAAAACGAGAAATGAATTGATTCTTAAATTCAAGGCCAAGTGCTTCTTGTAAGCCACCTCAAACCATTTTGTGAAACAGATCAAGGCATAGGTAAATGCATGCACACACAGCACATTCATATACACACATA-AAACTATTTTTCTCTTTCACTTCACTCTCATTCattcaatttattcaacaaat-ttttactgcatgcctaccaagtgccaggcactcatgtgagtcac--agcagcaaacaaga i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4151708 411 - 5137665 CCTGATTTGATAAATAACTAGCAATCATGGTAATAGTTTGAT---AACAGT---ATGACAGATAAGAAGAAAAGAAGCAGCTATTCTATATAGTCTGTGAGGACC-----------------------------------AGAAAGTGAAATCTATGCCCTTTACTGT-AGCTGAATGCATAGATCCCAACA-AAAATGGCATAGGTATCAATAAAACGAGAAATGAATTGATTCCTAAATTCAAGGCCAAGTGCTTCTTGTAAGCCTCCTCAAACCATTTTGTGAAACAGATCAAGGCATAGGTAAATGCATGCACACACAGCACATTCATATACACACATA-AAACTATTTTTCTCTTTCACTTCACTCTCATTCattcaatttattcaacaaat-ttttactgcatgcctaccaagtgccaggcactcatgtgagtcac--agcagcaaacaaga i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 56645 411 - 60632 CCTGATTTGATAAATAACTAGCAATCATGGTAATAGTTTGAT---AACAGT---ATGACAGATAAGAAGAAAAGAAGCAGCTATTCTATATAGTCTGTGAGGACC-----------------------------------AGAAAGTGAAATCTATGCCCTTTACTGT-AGCTGAATACATAGATCCCAATA-AAAATAGCATAGGTATCAATAAAACAAGAAATGAATTGATTCCTAAATTCAAGGCCAAGTGCTTCTTGTAAGCCAACACAAACCATTTTGTGAAACAGATCAAGGCATAGATGAATGCATGCACACACAGCACATTCATATACACACATA-AAACTATTTTTCTCTTTCACTTCACCCTCATTCattcaatttattcaacaaat-ttttactgcatgcctaccaagtgccaggcactcatgtgagtcac--agtagcaaacaaga i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1966949 411 + 2427316 CCTGATTTGATAAATAACTAGCAATCATGGTAATAGTTTGAT---AACAGT---ATGACAGATAAGAAGAAAAGAAGCAGCTATTCTATATAGTTTGTGAGGACC-----------------------------------AGAAAGTGAAATCTATGCCCTTTACTGT-AGCTGAATGCATAGATCCCAATA-AAAATGGCATAGGTATCAATAAAACGAGAAATGAATTGATTCCTAAATTCAAGGCCAAGTGCTTCTTGTAAGCCACCTCAAACCATTTTGTGAAACAGATCAAGGCATAGGTAAATGCATGCACACACAGCACATTCATATACACACATA-AAACTATTTTTCTCTTTCACTTCACTCTCATTCattcaatttattcaacaaat-ttttactgcatgcctaccaagtgccaggcactcatgtgagtcac--agcagcaaacaaga i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1253585 411 + 1448899 CCTGATTTGATAAATAACTAGCAATCATGGTAATAGTTTGAT---AACAGT---ATGACAGATAAGAAGAAAAGAAGCAGCTATTCTATATAGTCTGTGAGGACC-----------------------------------AGAAAGTGAAATCTATGCCCTTTACTGT-AGCTGAATGCATAGATCCCAATA-AAAATGGCATAGGTATCAATAAAATGAGAAATGAATTGATTCCTAGATTCAAGGCCAAGTGCTTCCTGTAAGCCACCTCAAACCATTTTGTGAAACAGATCAAGGCATAGATAAATGCATGCACACAGAGCACATTCACATACACACATA-AAGCTATTTTTCTCTTTCACTTCACCCTCATTCattcaatttagtcaacaaat-ttttactgcatgcctaccaagtgccaggcactcgtgtgagtcac--agcagcaaacaaga i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52989087 412 - 190850796 -CTGATTTGATAAATAACTAGCACTTATGGCAATAGTTTAAT---AACAGT---ATAACAGATAGGAAGAAAAGAAGCAGCTATTTTATACACTCTTTGAGGACC-----------------------------------AGAAACTGAAATCTATGCTCTTTACTAT-AACTGAATGCATAGATCCCAACG-AAAATGACATAGGTGTCAATAAAATGAGAAAATAATTGATTCCTAGAGTCAAGGCCAGgtgtttcttgtaagccacctcaaaccattttgtgaaatatatcaaggcatagataaatGCATGCACACACAGCACATTCATATACATACATATAAACTATTTTTCTCTTTCTGTTTACCATCGTTCattcaatttattcaacaaatatttaactgcgtgtctaccaaatgctaggcacttgtgtgagtaac--agcagcaaacaaga i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8152576 400 - 15139346 -CTGATTTGATAATTAATCAGCAATTATGGTAAAAGTTTAAT---AACAG------------TAGACAGAAAAAAAGCAGCTATTTTTCATA-TTTCCAAGGACC-----------------------------------AGAAAGTGAAATCTAAGCCCTTTACTAT-AACTGAATGCATAGCT-CCAATG--AAATGGCATAGATGTCAATAAAATGAGCAATTAATTGATTCCTAGATTCAAGCCCAGGTGTTTCTTATAAGCCACCTCAAACCATTTTGTGACACATACCAAGGCATAGATAAATGCATGCACACACAGCACATTCATATACATACATATAAACTATGTTTCTCTTTCAGTTTACCATCATTTattcaatttattcaacaaatacttaactgtgtgcctaccaagtgccaggcactcctgtgagtaac--agcagcaaacaaga i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6937106 404 - 7304997 -CTGATTTAATAAATAACTAGCAATTATGGTAATAGTTTAAT---AATAGT---ATGACAGATAGGAAGAAAAGAAGCAGCTATTTTTCATA-TTTCTGAGGACC-----------------------------------AGAACGTGAAATCTATACCCTTTACTAT-AACTGAATGCATAGATCCCAATG--AAATGGCATAGGTATAAATAAAATGAGAAATTAATTGATTCTTAGATTCACGGCCAGGTGTTTCTTGTAAGCCACCTCAAACCATTTTGTGAAACATATCAAGGCATAGATAAATGCATGCACACACAGCACATTCATATACATACATATAAACTATT------TTTCAGTTTACCATCATTCattcaatttattcaacaaatatttaactgtgtgcttaccaagtgccaggcactcctgtgagtaac--agcagcaaacaaga i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9353117 410 - 11631747 -CTGATTTGATAAATAACTAGCAATTACGGTAATAGTTTAAT---AACAGT---ATGACAGATAGGAAGAAAAGAAGCAGCTATTTTTCATA-TTTCTGAGGACC-----------------------------------AGAAAGTGAAATCTATGCCCTTTACTAT-AACTGAATGCATAGATCTCAATG--AAATGGCATAGGAGTCAATAAAATGAGAAATTAATTGATGCCTAGATTCAAGGCCAGGTGTTTCTTGTAAGACACCTCAAACCATTTTGTGAAACATATCAAGTCATAGATAAATGCATGCACACACAGCACATTCAAATACATACATATAAACTATTTTTCTCTTTCAGTTTACCATCATTCattcaatttattcaacaaatatttaaccgtgtgcctaccaagtgccaggcactcgtgtgagtaac--ggcagcaaacaaga i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1756844 397 + 3286835 CCTGATTTGATATATAATCTGCAATTATAGTATTAGGTTAAT---AACAGC---ATAACAGACCATAAGAAAAGAAGCATCTATTTTATATGGTCTGTGAAGACC-----------------------------------AGAAAGTGAATTCTATGCCCTTTACTGC-AATTGAATAAGTAGATCACAATG-AAAATGGTGTGAATATCA--------------TAATTAATACCTAGATTCAAGGCCAGGTGCttcttgtaagccatctcaaatccttctgggaaacaaatcagagcatgaataaatGCATACACACATTGCACATTCATAGACACATATA-AAATTATTGCTCTCTTTCACTTCACCATCATTCattcaattcattcaacaaat-atttattaggtgcttgtcaagtgccaggcaccagtgtgaatagc--agcagctaacaaga i micMur3.chrUn_NW_017968520v1 C 0 I 552 s proCoq1.NW_012140747v1 1835976 411 + 4188776 CCTGATTTGATAAATAATTAGCAATTATAGCAATAGGTTAAT---AACAGT---ATGTCAGACCAGAAGAAAAGAAGCATCTATTTTATATAGTCTGTGAAGACC-----------------------------------AGAAAGTGAACTCTCTGCCCTTTACTGT-AATTGAATAAGTAGATCACAACG-AAACTGGAGTAAGTATCAATAAAATGAGAAATTAATTAATACCTAGATTCAAGGCCAGGTGCTTCttgtaagccatctcaaatccttctgggaaacaaatcagggcatacataaatGCTTGCACACATGGCACATTCACAGACACATATA-AAACTATTTTTCTCTTTCACTTCACCATCATTCattcaattcattcaacaaat-atttattgagtgcctgtcaagcgccaggcgctagtgtgagtagc--agcagcaaacaaga i proCoq1.NW_012140747v1 M 1915 C 0 s otoGar3.GL873602 8589627 407 + 8790067 CCCAATTTGATAAATAACTAGCAATTGTAACAATAGTTTAAT---AGTAGTAGAATAATAGACAGGAAGAAGATAAGCCTCTATTTTATATAATCTGTGAAGATC-----------------------------------AGAAAGTGAGCTCTATACCCTTCATTGC-AATTAAATAAGTAGACCACAATG-AAAATGGCATAAGTTTCAATAAGATGAGAAATTAATTAATACTTAAATCCAAGGCCAGGGACTTCTTGTAAACAACCACAAATTCTTTTGTGAATCAAATCGGGGCATAAATAAATGCTTGCACACACTGCACATTCATAGACACATATA-TCAT--TTTTTCTCTTTTACTTCACCA----TTattcaattctatcaacaaat-atttattgagtgcctgccaagtaccaggtactagtgtaagtaat--agcagc-aacaaga i otoGar3.GL873602 I 4 C 0 s canFam3.chr13 47951422 426 + 63241923 -CTGATTTGATAAATAACTATCAATTGTAGCAATAGGTTAAT---AACAAT---ATAACAG----GAAAAAAAGAAACAGCCATTTCATATAGTCAGAGAGGACCAGAAGACTTCATTTTCTGCTATAGAAAATGGGTAAAGAAAATGAAATCTATACCCTTTATTGC-AAATGAATAAGCAGATCACAGTGAAAAATGGCGTAAGTATCAACAAAATGAAAAATTAATTGCTTCCTAGATTCAAAGCTGGTTGCTTCTTGTAAGTCACTTCATACTCTTTCAAGAAATAAA-----GCATAAGTAAATGCATGTACACA---------CACACACACGTATA-TAACTATTTGTCTCTTTCATTTCAC----ATTCattcaattcattcaacaaac-atttacggagtgtccaccaagtgccaggccccagtgtgagtaacataggagccagcaaga i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4059382 412 - 5279953 GTTGATTTTATAAAACACTAGCAATTGTAATAGTAGGTTAATAACAACAGT---ATGATGGACAGGAAGAAAAGCAGCAGGTATATTATATAATCTGTGCAGACC-----------------------------------ACAACATGAAATCTCTGCCCTTCACCCTCAATTGAAAGAGCCGATCACAATG-AAAATGGCATAAGTATCAA-AAACTGAGAAACTAATTGATTCCTAGATTCAAGGCCAGGTGCTTTTTATAAGCCACTTCAAATC-TTCTGTGAAATAAA--ACGGCATAAATAAATGCATGCATGTACA-CACATTCATACACACACAAAAAAACTATTTTTCTCTTTCACTTCACCATCA-TCattcaatacattcaacaaat-atttactgagtgcctactatgtgccaggcactagtaagaataacacagcaccaaacgaga i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76394611 938 + 151834684 I a score=94455.000000 s hg38.chr4_KI270787v1_alt 26210 9 + 111943 cataccaag------- s panTro5.chr4 119588506 9 - 194502333 cataccaag------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121004777 9 - 195804263 cataccaag------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4435902 9 - 17550833 cataccaag------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69308705 9 - 118206036 cataccaag------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111513506 9 - 190429646 cataccaag------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110681632 9 - 189454096 cataccaag------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13249403 9 + 26754465 cataccaag------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4152119 9 - 5137665 cataccaag------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 57056 9 - 60632 cataccaag------- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1967360 9 + 2427316 cataccaag------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1253996 9 + 1448899 cataccaag------- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52989499 9 - 190850796 cagactgag------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8152976 9 - 15139346 tgtaccgag------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6937510 9 - 7304997 cataccgag------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9353527 9 - 11631747 cataccgag------- i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1836387 9 + 4188776 tatatgagg------- i proCoq1.NW_012140747v1 C 0 I 14 s otoGar3.GL873602 8590034 9 + 8790067 tatatgagg------- i otoGar3.GL873602 C 0 I 7 s canFam3.chr13 47951848 9 + 63241923 cataccagg------- i canFam3.chr13 C 0 I 6 s dasNov3.JH568349 4059794 14 - 5279953 --gatgaggcccccgg i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1757241 552 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I a score=90370.000000 s hg38.chr4_KI270787v1_alt 26219 9 + 111943 ctttctgag s panTro5.chr4 119588515 9 - 194502333 ctttctgaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121004786 9 - 195804263 ctttctgaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4435911 9 - 17550833 ctttctgaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69308714 9 - 118206036 ccttctgaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111513515 9 - 190429646 ccttctgaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110681641 9 - 189454096 ccttctgaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13249412 9 + 26754465 ccttctgaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4152128 9 - 5137665 ccttctgaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 57065 9 - 60632 ccttctgaa i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1967369 9 + 2427316 ccttctgaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1254005 9 + 1448899 ccttctgaa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52989508 9 - 190850796 acttctcaa i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8152985 9 - 15139346 acttctgaa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6937519 9 - 7304997 actactgaa i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9353536 9 - 11631747 acttctgaa i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8590050 9 + 8790067 gcttctgga i otoGar3.GL873602 I 7 C 0 s canFam3.chr13 47951863 9 + 63241923 gcctgtgaa i canFam3.chr13 I 6 C 0 s dasNov3.JH568349 4059808 9 - 5279953 ctttgcaga i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1836396 14 + 4188776 I e micMur3.chrUn_NW_017968520v1 1757241 552 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I a score=1096234.000000 s hg38.chr4_KI270787v1_alt 26228 83 + 111943 gctcataacctagagggaggaagacagaccataagcaaaaaagcaaacagatatacaaagtaatttcagaaagtaataagagc s panTro5.chr4 119588524 83 - 194502333 gctcataacctagaaggaggaagacagaccataagcaaaaaagcaaacagatatacaaggtaatttcagaaagtaataagagc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121004795 83 - 195804263 gctcataacctagaaggaggaagacagaccataagcaaaaaagcaaacagatatacaaggtaatttcagaaagtaataagagc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4435920 83 - 17550833 gctcataacctagagggaggaagacagaccataagcgaaaaagcaaacagatatacaaggtaatttcagaaagtaataagagc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69308723 83 - 118206036 gctcataacctagagggaggaagacagaccataagcaaaaaagcaaacagatatacaaggtaatttcagaaagtaataagagc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111513524 83 - 190429646 gctcataacctagagggaggaagacagaccataagcaaaaaagcaaacagatatacaaggtaatttcagaaagtaataagagc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110681650 83 - 189454096 gctcataacctagagggaggaagacagaccataagcaaaaaagcaaacagatatacaaggtaatttcagaaagtaataagaac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13249421 83 + 26754465 gctcataacctagagggaggaagacagaccataagcaaaaaagcaaacagatatacaaggtaatttcagaaagtaataagaac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4152137 83 - 5137665 gctcataacctacagggaggaagacagaccataagcaaaaaagcaaacagatatacaaggtaatttcagaaagtaataagaac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 57074 83 - 60632 gctcataacctagagggaggaagacagaccataagcaaaaaagcagacagatatacaaggtaatttcagaaagtaataagaac i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1967378 83 + 2427316 gctcataacctagagggaggaagacagaccataagcaaaaaagcaaacagatatacaaggtaatttcagaaagtaataagaac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1254014 83 + 1448899 gctcataacctagagggaggaagacagaccataagcaaaaaagcaaacagatatacaaggtaatttcagaaagtaataagaac i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52989517 82 - 190850796 actcataatctagagggaggcagat-gaccataagcaagaaagcaaacagatatacaaggtaattttagaaagtaataagagc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8152994 83 - 15139346 gctcataatctagagggaggaagacagaccataagcaagaaagcaaacagatatacaaggtaattttagaaagtaataagagg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6937528 83 - 7304997 gctcataatctagaggaaggaagacagaccataagcaagaaagcaaacagatatacaaggtaattttagaaagtaataagagc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9353545 83 - 11631747 gctcataatctagagggaggaagatagaccataaacaagaaagcaaacagatacacaaggtaattttagaaagtaagaagagc i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1836410 83 + 4188776 gctgataacctagaggaagacagacagacaataagcaagaaggcaacaagatatacaaggtaattttagaaagtaacaagagc i proCoq1.NW_012140747v1 I 14 I 28 s otoGar3.GL873602 8590059 27 + 8790067 gctgatgacctacagggag-------------------gaAGGCCC------------------------------------- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47951872 82 + 63241923 gctgataacccagagggaggaagacagacaat-ggcaagaaagcaaagagatatacacgataatgtcagaaagtgataagctc i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4059817 76 - 5279953 gctgagatgctggagagaggcagacag-------gcaggaagacaaacagacacacaagataatctcagaaagtaataagtgc i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1757241 552 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I a score=436084.000000 s hg38.chr4_KI270787v1_alt 26311 51 + 111943 tctgaagagttggaccaagaca-tg--agagacagactgggtaaga--ggtcattt s panTro5.chr4 119588607 51 - 194502333 tctgaagagttggaccaagaca-tg--agagacagactgggtaaga--ggtcattt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121004878 51 - 195804263 tctgaagagttggaccaagaca-tg--agagacagattgggtaaga--ggtcattt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4436003 51 - 17550833 tctgaagagttggaccaagaca-tg--agagaaagactgggtaaga--ggtcattt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69308806 51 - 118206036 tctgaagagttggaccaagaca-tg--agggacagactgggtaaga--ggtcattt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111513607 47 - 190429646 tc----gtggtggaccaagaca-tg--agagacacactgggtaaga--ggtcattt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110681733 47 - 189454096 tc----gtggtggaccaagaca-tg--agagacacactgggtaaga--ggtcattt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13249504 47 + 26754465 tc----gtggtggaccaagaca-tg--agagagacactgggtaaga--ggtcattt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4152220 47 - 5137665 tc----gtggtggaccaagaca-tg--agagacacactgggtaaga--ggtcattt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 57157 47 - 60632 tc----atggtggaccaagaca-tg--agagacaccctgggtaaga--ggtcattt i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1967461 47 + 2427316 tc----gtagtggaccaagaca-tg--agagacacactgggtaaga--ggtcattt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1254097 47 + 1448899 tg----gtggtggaccaagaca-tg--agagacacactgggtaaga--ggtcattt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52989599 51 - 190850796 tctggagagttggaccaaggta-tg--agagagagactgggtaaga--gcttattt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8153077 51 - 15139346 tctgaagagttggaccaagata-tg--agagagagactgggtaaga--gctcattt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6937611 51 - 7304997 tctgaagagttggaccaagata-tg--agagagagactgggtaaga--gttcattt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9353628 51 - 11631747 tctgaagagttggaccaagata-tg--agagagagactgggtaaga--gctcattt i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8590086 21 + 8790067 TCTGAAGAGGTGG-------CA-TG--TGAG------------------------- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47951954 51 + 63241923 tctggaaggcttgataagatcagtg--agggactggctaga-aaga--ggtcattc i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4059893 55 - 5279953 tcctaaaaatgtgataaaggga-tgcaagagagagactgggtgagaagaggcattt i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1836493 28 + 4188776 I e micMur3.chrUn_NW_017968520v1 1757241 552 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I a score=289784.000000 s hg38.chr4_KI270787v1_alt 26362 29 + 111943 tgatgggaaga-ccccagtgaagaag-------tgac s panTro5.chr4 119588658 29 - 194502333 tgatgggaaga-ccccagtgaagaag-------tgac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121004929 29 - 195804263 tgatgggaaga-ccccagtgaagaag-------tgac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4436054 29 - 17550833 tgatgggaaga-ccccagtgaagaag-------tgac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69308857 29 - 118206036 tgatgggaaga-ccccaatgaagaag-------tgac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111513654 29 - 190429646 tgatgggaaga-ccccaaggaagaag-------tgac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110681780 29 - 189454096 tgatgggaaga-ccccaaggaagaag-------tgac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13249551 29 + 26754465 tgatgggaaga-ccccaaggaagaag-------tgac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4152267 29 - 5137665 tgatgggaaga-ccccaaggaagaag-------tgac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 57204 30 - 60632 tgatgggaagacccccaaggaagaag-------tgac i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1967508 29 + 2427316 tgatgggaaga-cccgaaggaagaag-------tgac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1254144 29 + 1448899 tgatgggaaga-ccccaaggaagaag-------tgac i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52989650 36 - 190850796 tgatgggaagg-ccccaatgaagaaggggcacatgac i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8153128 36 - 15139346 tgatgggaagg-ccccagtgaagaaggggcacatgac i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6937662 33 - 7304997 tgatgggaagg-ccccagt---gaaggggcatatgag i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9353679 36 - 11631747 tgatggtaaga-gttcaatgaagaaggggcacatgac i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1836521 29 + 4188776 tgatgggaagg-ccccactgaagagg-------tggc i proCoq1.NW_012140747v1 I 28 I 49 s canFam3.chr13 47952005 29 + 63241923 tgatgaaaggg-cctctctgaagagg-------tggt i canFam3.chr13 C 0 I 7 s dasNov3.JH568349 4059948 21 - 5279953 ggatggtaagg-cccctctgag--------------- i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1757241 552 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I e otoGar3.GL873602 8590107 0 + 8790067 C a score=708547.000000 s hg38.chr4_KI270787v1_alt 26391 62 + 111943 tctgagatgggaacaatgagaaggagcctgagagtgtaaagcactgtgtgaagagggaggaa s panTro5.chr4 119588687 62 - 194502333 tctgagatgggaacaatgagaaggagcctgagagtgtaaaccactgtgtgaagagggaggaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121004958 62 - 195804263 tctgagatgggaacaatgagaaggagcctgagagtgtaaaccactgtgtgaagagggaggaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4436083 62 - 17550833 tctgagatgggaacaatgagaaggagcctgagagtgtaaaccactgtgtgaagagggaggaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69308886 62 - 118206036 tctgagatgggaacaatgagaaggaggctgagagtgtaaagcactgtgtgaagagggaggaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111513683 62 - 190429646 tctgagatgggaacaattagaaggagcctgagagtgtaaagcactgtgtgaagagggaggaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110681809 62 - 189454096 tctgagatgggaacaattagaaggagcctgagagtgtaaagcactgtgtgaagagggaggaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13249580 62 + 26754465 tctgagatgggaacaattagaaggagcctgagagtgtaaagcactgtgtgaagagggaggaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4152296 62 - 5137665 tctgagatgggaacaatgagaaggagcctgagagtgtaaagcactgtgtgaagagggaggaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 57234 62 - 60632 tctgagatgggaacaatgagaaggagcctgagagtgtaaagcactgtgtgaagagggaggaa i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1967537 62 + 2427316 tctgagatgggaacaatgagaaggagcctgagagtgtaaagcactgtgtgaagagggaggaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1254173 62 + 1448899 tctgagatgggaacaatgagaaggagcctgagagtgtaaagcactgtgtgaagagggaggaa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52989686 59 - 190850796 cctgagatgggaacaatg---agaagcctgagagggtaaagcactgtgggaagaggaaggag i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8153164 62 - 15139346 cctgagacgggaacgatgagaagaagcctgagagggtaaagcactgtgggaagaggaaggag i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6937695 62 - 7304997 cctgagctgggaacaatgagaagaagcctgagagggtaaagcactgtgggaagaggaaggag i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9353715 62 - 11631747 cctgagatgggaacaatgagaagaagcctgagagggtaaagcactgtgggaagaggaaggag i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8590107 47 + 8790067 CCTGAGGTGGGAAGCATGAGAGAGAGCTTGTCGGCACATGGAACTGC--------------- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47952041 52 + 63241923 cctgagtcaggaacaaagagaaagggcctgccagtgtaaaa---tgtgtgaagaa------- i canFam3.chr13 I 7 C 0 s dasNov3.JH568349 4059969 54 - 5279953 ---gagatgggaatgatgagaaaggtcctgccagggtaaagcactgggggaagtgag----- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1836550 49 + 4188776 I e micMur3.chrUn_NW_017968520v1 1757241 552 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I a score=1722312.000000 s hg38.chr4_KI270787v1_alt 26453 160 + 111943 cattctgagcagggcaaacagcaaggacaa-ggtcagtcaggaggcaggaataagctcagccc-taagcatcgtgagcgggtga----aatgagcaagaaggg-gat-ggtatgagctgaggttggcaagacaggcagatgtcaagtcatgctg--------ggctttaggggtta s panTro5.chr4 119588749 161 - 194502333 cattctgagcagggcaaacagcaaggacaa-ggtcagtcaggaggcaagaataagctcagccc-taagcatcgtgagcgggtga----aatgagcaagaaggg-gatgggtatgagctgaggttggcaaggcaggcagatgtcaagtcatgctg--------ggctttaggggtta i panTro5.chr4 C 0 C 0 s panPan2.chr4 121005020 161 - 195804263 cattctgagcagggcaaacagcaaggacaa-ggtcagtcaggaggcaagaataagctcagccc-taagcatcgtgagcgggtga----aatgagcaagaaggg-gatgggtatgagctgaggttggcaaggcaggcagatgtcaagtcatgctg--------ggctttaggggtta i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4436145 160 - 17550833 cattctgagcagggcaaacagcaaggacaa-ggtcagtcaggaggcaggaataagctcagccc-taagcatcgtgagcgggtga----aatgagcaagaaggg-gat-ggtatgagctgaggttggcaaggcaggcagatgtcaagtcatgctg--------ggctttaggggtta i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69308948 160 - 118206036 cattctgagcagggcaaacagcaaggacaa-ggtcagtcaggaggcaggaacaagctcagccc-taagcatcgtgagcgggtga----aatgagcaagaaggg-gat-ggtatgagctgaggttggcaaggcaggaagatgtcaagtcatgctg--------ggctttaggggtta i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111513745 160 - 190429646 cattctgagtagggcaaacagcaaggacaa-ggtctgtcaggaggcaggaatgagctcagccc-taagcatcgtgagcaggtga----aatgagcaagaaggg-gac-ggtatgagctggggttggccaggtaggcagacggcaagtcatgctg--------gactttaggggtta i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110681871 160 - 189454096 cattctgagtagggcaaacagcaaggacaa-ggtctgtcaggaggcaggaatgagctcagccc-taagcatcgtgagcaggtga----aatgagcaagaaggg-gac-ggtatgagctggggttggccaggtaggcagacggcaagtcatgctg--------gactttaggggtta i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13249642 160 + 26754465 cattctgagtagggcaaacagcaaggacaa-ggtctgtcaggaggcaggaatgagctcagccc-taagcatcgtgagcaggtga----aatgagcaagaaggg-gac-ggtatgagctggggttggccaggtaggcagacggcaagtcatgctg--------gactttaggggtta i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4152358 160 - 5137665 cattctgagtagggcaaacagcaaggacaa-ggtctgtcaggaggcaggaatgagctcagccc-taagcatcgtgagcaggtga----aatgagcaagaaggg-gac-ggtatgagctggggttggccaggtaggcagacggcaagtcatgctg--------gactttaggggtta i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 57296 160 - 60632 cattctgagcagggcaaacagcaaggacaa-ggtcagtcaggaggcaggaatgagctcagccc-taagcatcgtgagcaggtga----aatgagcaagaaggg-gat-ggtatgagctgaggttggccaggtaggcagacggcaagtcatgCTG--------GACTTTAGGGATTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1967599 160 + 2427316 cattctgagtagggcaaacagcaaggacaa-ggtctgtcaggaggcaggaatgagctcagccc-taagcatcgtgagcaggtga----aatgagcaacaaggg-gac-ggtatgagctggggttggccaggtaggcagacggcaagtcatgctg--------gactttaggggtca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1254235 160 + 1448899 cattctgagtagggcaaacagcaaggacag-ggtcagtctggaggcaggaacgagctcagccc-taagcatcgtgagcaggtga----aatgagcaagaaggg-gat-ggtatgagctgaggttggcaaggtaggcagatggcaagtcatgctg--------gactttaggggtta i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52989745 155 - 190850796 tattctgagcaggtcaaatagcaaggacaa-ggtt----aggaggaaggaacaagctaagctc-taaccatcgtgagtgggcga----agtaagcgagaaggg-gat-ggtaagagctga-ggGGCCAAGGTCGGCAGATGTCAAGTCAGGCTG--------GGCTTTAGGGGTTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8153226 142 - 15139346 cattctgagcagggcaaatgccaaggacaa-tgttagtcaggaggcagggacaagctcagccc-taaccgtcgtgagtggacga----agtgagcaagaag--------------------gaTGCCAAGGTCGGCAGATGTCAAGTCATGCTG--------GGCTTTCGGGGTTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6937757 146 - 7304997 cattctgagcagggcaaataccaaggacaa-ggttagtcaggaggcaggaacaagctcagcCC-TAACCATCGTGAGTGGATGAAGTGAGTGAGCAAGAAG--------------------GTTGCCAAGGTCGGCAGATGTCAAGTCATGCTG--------GGCTTTAGGGGTTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9353777 142 - 11631747 cattctcagcaaggcaaataccaaggacaa-ggttagtcaggaggcaggaacaagctcagcCC-TAACCATCGTGAGAGGGCGA----AGTGAGCAAGAAT--------------------ATTGCCAAGGTTGGCAGACGTCAAGTCATGCTG--------GGCTTTAGGGGTTA i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1836599 161 + 4188776 cattctgagaaggccagacagcaaggacagcggccagtcggcaggcaggagcaagtgtggccagtgagcatcgtgaacgg-tga----cgtaggcgaggaggg-aac-aacctgagctgaggttggcaagggaggcagctgtcagatcatgCTG--------GGCTTTAGGGATTA i proCoq1.NW_012140747v1 I 49 C 0 s otoGar3.GL873602 8590154 150 + 8790067 --------ACAGCCCAGACCACAGGAACAGTGACCAGTCAGGAGGCAGGAACAAGCATGGCCAGTGAGCATCGTGAGCAG-TAA-----GTGGGC--AGAATG-GGC-GATCTGCCCTGAGGTTGGCAAGGGAGGCCCCTGCTAGATCACTCTG--------GGCTTTAGGGTGCA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47952093 146 + 63241923 -catctgggcagagcaaacagaaagtacaatggtcagctcagaagcaggaatcaactggcgag-tgagcacagggaatgggcca----agtgagt-agaggat-gac--------------gttggcaagggATGCAGCCACCAGATCATGCTG--------AGCTCTAGGGATTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4060023 147 - 5279953 -ctcctgg---------------agagcag--------tgagaagcaggaactagcttggcccatgagcacagtgagagaggga----agtgagtgagcagggcggt-ggtacaggttgcagttggcaaggaaagcagctgtcggatcatgCTGACATGCTAGGCATTAAGGATTA i dasNov3.JH568349 C 0 I 559 e micMur3.chrUn_NW_017968520v1 1757241 552 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I a score=2009691.000000 s hg38.chr4_KI270787v1_alt 26613 158 + 111943 ttCCAGTGTTGCAT-AGCAATAAGGGTCAGAACTCTGATTTTCTGATTTATAGCTC-AGGTCCTTATTCT-CC--CCTTTGCCACTTT-CTTT-GGGGGGAGGCATGGAATGGAATAGCCAGCTGCCCATTCAAACAAAACAGAGACCTGCCAAGCTCTGGGAGG s panTro5.chr4 119588910 157 - 194502333 ttCCAGTGTTGCAT-AGCAGTAAGGGTCAGAACTCTGATTTTCTGATTTATAGCTC-AGGTCCTTATTCT-CC--CCTTTGCCACTTT-CTTT--GGGGGAAACATAGAATGGAATAGCCAGCTGCCCATTCAAACAAAACAGAAACCTGCCAAGCTCTGGGAGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121005181 157 - 195804263 ttCCAGTGTTGCAT-AGCAGTAAGGGTCAGAACTCTGATTTTCTGATTTATAGCTC-AGGTCCTTATTCT-CC--CCTTTGCCACTTT-CTTT--GGGGGAAACATAGAATGGAATAGCCAGCTGCCCATTCAAACAAAACAGAAACCTGCCAAGCTCTGGGAGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4436305 159 - 17550833 ttCCAGTGTTGCAT-AGCAGTAAGGGTCAGAACTCTGATTTTCTGATTTATAGCTC-AGGTCCTTATTCT-CC--CCTTTGCCACTTT-CTTTTGGGGGGAAACATAGAATGGAATAGCCAGCTGCCCATTCAAACAAAACAGAGACCTGCCAAGCTCTGGGAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69309108 158 - 118206036 ttCCAGTGTTGTAT-AGCAATAAGGGTCAGAACTCTGATTTTCTGATTTATAGCTC-AGGTCCTTATTCT-CC--CCTTTGCCACTTT-CTTT-GGTGGGAAACATGGAGTGGAATAGCCAGCTGCCCATTCAAACAAAACAGAGACCTGCCAAGCTCTGGGAGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111513905 158 - 190429646 ttCCAGTGTTGCAT-AGCAATAAGGGTCAGAACTCTGATTTTCTGATTTATAGCTC-AGGTCCTTATTCT-CC--CCTTTGCCACTTT-CTTT-GGTGGGAAACATGGAATGGAATATTTAGCTGCCCATTCAAACAAAACAGAGGCCTGCCAAGCTCTGGGAGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682031 158 - 189454096 ttCCAGTGTTGCAT-AGCAATAAGGGTCAGAACTCTGATTTTCTGATTTATAGCTC-AGGTCCTTATTCT-CC--CCTTTGCCACTTT-CTTT-GGTGGGAAACATGGAATGGAATATTTAGCTGCCCATTCAAACAAAACAGAGGCCTGCCAAGCTCTGGGAGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13249802 158 + 26754465 ttCCAGTGTTGCAT-AGCAATAAGGGTCAGAACTCTGATTTTCTGATTTATAGCTC-AGGTCCTTATTCT-CC--CCTTTGCCACTTT-CTTT-GGTGGGAAACATGGAATGGAATATTTAGCTGCCCATTCAAACAAAACAGAGGCCTGCCAAGCTCTGGGAGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4152518 158 - 5137665 ttCCAGTGTTGCAT-AGCAATAAGGGTCAGAACTCTGATTTTCTGATTTATAGCTC-AGGTCCTTATTCT-CC--CCTTTGCCACTTT-CTTT-GGTGGGAAACATGGAATGGAATATTTAGCTGCCCATTCAGACAAAACAGAGGCCTGCCAAGCTCTGGGAGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 57456 158 - 60632 TTCCAGTGTTGCAT-AGCAATAAGGGTCAGAACTCTGATTTTCTGACTTATAGCTC-AGGTCCTTATTCT-CC--CCTTTGCCACTTT-CTTT-GGTGGGAAACATGGAATGGAATATTTAGCTGCCCATTCAAACAAAACAGAGGCCTGCCAAGCTCTGGGAGG i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1967759 158 + 2427316 ttCCAGTGTTGCAT-AGCAATAAGGGTCAGAACTCTGATTTTCTGATTTATAGCTC-AGGTCCTTATTCT-CC--CCTTTGCCACTTT-CTTT-GGTGGGAAACATGGAATGGAATATTTAGCTGCCCATTCAAACAAAACAGAGGCCTGCCAAGCTCTGGGAGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1254395 158 + 1448899 ttCCAGTGTTGCAT-AGCAATAAGGGTCAGAACTCTGATTTTCTGATTTATAGCTC-AGGTCCTTATTCT-CC--CCTTTGCCACTTT-CTTT-GGTGGGAAACATGGAATGGAATATTTAGCTGCCCATTCAAACAAAACAGAGGCCTGCCAagctctgggagg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52989900 158 - 190850796 TTCCAGTGATGCAC-AGCAATAAGAGTCAGAACTCTGATCTTTTGATTTATAGCCC-AGGTCCCTGTTCT-CC--CCTTTGCCACTTT-CGTT-AGTGGGAAACGTGGAATAGAATAGCCAGCTGCCCACCCAAACAAAACAGAGGCCTGCCAAGCTCTGGAAGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8153368 152 - 15139346 TTCCAGTGATGCAC-AGCAATAAGAGTCAGAACGCTGATCTTCGGATTTATAGCCC-AGGTCCCTGTTCTCCC--CCTTTGCCACTTT-CTCT-GGTGGGAAACATGGAATGGAATAGCCAGCTGCCCACCCAGACAAAACAGAGGCCTGC----CTCTT---CG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6937903 158 - 7304997 TTCCAGTGATGCAT-AGCAATAAGAGTCAGAACTCTGATCTTCTGATTTATAGCCC-AGGTCCCTGTTCT-CC--CCTTTGCCACTTT-CTTT-GGTGGGAAACATGGAATGGAATAGCCAGATGCCCACCCAAACAAAACAGAGGCCTGCCAagctctggaagt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9353919 158 - 11631747 TTCCAGTGATGCAC-AGCAATAAGAGTCAGAACTCTGATCTTCTGATTTATAGCCC-AGGTCCCTGTTCT-CC--CCTTTGCCACTTT-CTTT-GGTGGGAAACATGGAATGGAATAGCCAGCTGCCCACCCAAACAAAACAGAGGCCTGCCAAGCTCTGGAAGG i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1836760 159 + 4188776 TTGCAATATTGCACAGGCAGTAAGGGGCAGAACTTGGATCTCCTGACATATAGCTCAAAGTCCCTGTTCT-CC--CCCTTGCCACTCC-GTTC--GGGGAAAACACGGAATGGAATAGCCAGCCACTCACCCGAACGAAACAAAGGCCTGCCAAGCTCTGGAAGG i proCoq1.NW_012140747v1 C 0 I 25 s otoGar3.GL873602 8590304 158 + 8790067 GTGCAATGTTGCACCAGCAATAAGAGTCAGAATTTGGGTCTTCTGATATGTAGCTCAAAACCCCTGTTGT-CT--CTCTTGCCACTCT-GTTT-AGGAGGGAATGTGGAATGGAATAGCCAACTACTCACCCAAACAAAACAAAGGCCTGCCAAGCTCCAGAA-- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47952239 152 + 63241923 TTCTGATGCTACAAAAACAGTAAGGGTCAGAGCTTGGATCTTACAGTTCACGGTTC-G----TCTGTTTC-CC--TCCTTGCCACTCTGCTTC-AGTGGGGAGCATGGGAGGGAATAGCCAGTCACCCAC----ATAAAACACAGGCTGACTAAGCTCTGAAAGG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4060729 125 - 5279953 gtctaatgttgcataagcaataagggtcagaactcagttcctctgatttgtagttc-atgatccttttgt-tctgctcttgctactctgcTTC-AGTGGG-------------------CGAATGACCGCTCA------------------CAAGTTCTGGAAGG i dasNov3.JH568349 I 559 C 0 e micMur3.chrUn_NW_017968520v1 1757241 552 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I a score=304083.000000 s hg38.chr4_KI270787v1_alt 26771 29 + 111943 CATGGAAGAGGTGACTATGTCCTCAGTCG- s panTro5.chr4 119589067 29 - 194502333 CATGGAAGAGGTAACTATGTCCTCAGTCG- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121005338 29 - 195804263 CATGGAAGAGGTAACTATGTCCTCAGTCG- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4436464 29 - 17550833 CATGGAAGAGGTGACTATGTCCTCAGTCG- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69309266 29 - 118206036 CATGGAAGAGGTGACTATGTCCCCAGTCG- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514063 29 - 190429646 CATGGAAGAGGTGACTATGTCCCCACTCG- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682189 29 - 189454096 CATGGAAGAGGTGACTATGTCCCCACTCG- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13249960 29 + 26754465 CATGGAAGAGGTGACTATGTCCCCACTCG- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4152676 29 - 5137665 CATGGAAGAGGTGACTATGTCCCCACTCG- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 57614 29 - 60632 CATGGAAGAGGTGACTATGTCCCCACTCG- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1967917 29 + 2427316 CATGGAAGAGGTGACTATGTCCCCACTCG- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1254553 29 + 1448899 catggaagaggtgactatgtccccactcg- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990058 29 - 190850796 CATGGAATAGGCGACTGTGCCCCCACTCT- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8153520 29 - 15139346 CACGGAGGAGGCGTCTTTGCCGTCACTCT- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6938061 29 - 7304997 catggcagaggcgactgtgccaccactct- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9354077 29 - 11631747 CATGGAAGAGGCGACTGTGCCGCCACTCT- i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8590462 23 + 8790067 ---GGAAGAGGTAATTGTG-CATCTCT--- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47952391 29 + 63241923 CATAGAAGAGGTGACCATGCCCCATCTTT- i canFam3.chr13 C 0 I 4 s dasNov3.JH568349 4060854 30 - 5279953 CATGGAAGAGGTGACGATGGCCCCAGCTCT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1836919 25 + 4188776 I e micMur3.chrUn_NW_017968520v1 1757241 552 + 3286835 I e mm10.chr5 76394611 938 + 151834684 I a score=1573139.000000 s hg38.chr4_KI270787v1_alt 26800 104 + 111943 CATTTTGCCTTCTTGGATGTGGC-T-CCCCTT-GGGGTTCTCTTACTTTGATTCCCATCAGTCCCATCCTGCCCAAGTCCCT-GAAGTATAGTTGTCCATACACGGAC s panTro5.chr4 119589096 104 - 194502333 CATTTTGCCTTCTTGGATGTGGC-T-CCCCTT-GGGGTTCTCTTACTTTGATTCCCATCAGTCCTATCCTGCCCAAGTCCCT-GAAGTATAGTGGTCCATACACGGAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121005367 104 - 195804263 CATTTTGCCTTCTTGGATGTGGC-T-CCCCTT-GGGGTTCTCTTACTTTGATTCCCATCAGTCCTATCCTGCCCAAGTCCCT-GAAGTATAGTGGTCCATACACGGAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4436493 104 - 17550833 CATTTTGCCTTCTTGGATTTGGC-T-CCCCTT-GGGGTTCTCTTACTTTGATTCCCATCAGTCCCATCCTGCCCAAGTCCCT-GAAGTATAGTGGTCCATACACGGAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69309295 104 - 118206036 CATTTTGCCTTCTTGGATGTGGC-T-CCCCCT-GGGGTTCTCTTACTTTGATTCCCATCACTCCCATCCTGCCCAAGTCCCT-GAAGTATAGTGGTCCATAAATGGAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514092 104 - 190429646 CATTTCGCCTTCTTGGCTGTGGC-T-CCACCT-GGTGTTCCCTTGCTTTGATTCCCATTACTCCCATCCTGCCCAAGTCCCT-GAAGTAAGGTggtccatacatggac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682218 104 - 189454096 CATTTCGCCTTCTTGGCTGTGGC-T-CCACCT-GGTGTTCCCTTGCTTTGATTCCCATTACTCCCATCCTGCCCAAGTCCCT-GAAGTAAGGTGGTCCATACATGGAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13249989 104 + 26754465 CATTTTGCCTTCTTGGCTGTGGC-T-CCACCT-GGTGTTCCCTTGCTTTGATTCCCATTACTCCCATCCTGCCCAAGTCCCT-GAAGTAAGGTggtccatacatggac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4152705 104 - 5137665 CATTTCGCCTTCTTGGCTGTGGC-T-CCACCT-GGTGTTCCCTTGCTTTGATTCCCATTACTCCCATCCTGCCCAAGTCCCT-GAAGTAAGGTggtccatacatggac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 57643 104 - 60632 CATTTCGCCTTCTTGGCTGTGGC-T-CCACCC-AGTGTTCTCTTGCTTTGATTCCCATTACTCCCATCCTGCCCAAGTCCCT-GAAGTAAGGTGGTCCATACATGGAC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1967946 104 + 2427316 CATTTCGCCTTCTTGGCTGTGGC-T-CCACCT-GGTGTTCCCTTGCTTTGATTCCCATTACTCCCATCCTGCCCAAGTCCCT-GAAGTAAAGTggtccatacatggac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1254582 104 + 1448899 catttcgccttcttggctgtggc-c-ccacct-ggcgttctcttgctttgattcccatcactcccatcctgcccaagtccct-gaagtaaggtggtccatacatggac i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990087 104 - 190850796 CATTTTGCCTTCTTGGATGGGGC-T-CCCCCT-GGTGTTCTCTTGCTTTGATTCCCATCACTCCTATCCTGCCCAAGTCCCT-GAAGAATGGTGGTCCATACATGGAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8153549 104 - 15139346 CCTTTTGCCTTCTTGGATATGGC-T-CCCCCT-GGGGTTCTCTTGCTTTGATTCCCATCACGCCCATCCTGCCCAAGTCCCT-GAAGAATGGTGGTCCATACATGGAC i saiBol1.JH378162 C 0 I 319 s cebCap1.NW_016107439v1 6938090 104 - 7304997 cattttgccttcctggatgtggc-t-ccccct-ggggttctcttgctttgattcccatcactcccatcctgcccaagtccct-gaagaatagtggtccatacatggac i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9354106 104 - 11631747 CATTTTGCCTTCTTGGATGCGGC-T-CCCCGT-GGGGTTCTCTTGCTTTGATTCCCATCACTCCCATCCTGTCCAAGTGCCT-GAAGAATGGTggtccatacatggac i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1757793 104 + 3286835 CATTCTGCCTTCTTGGATGTGGCTT-CCCCCT-GGGGTTCTCTTGCTTTGATTTCTATCGTTCCTATCCCACCCACATCCCT-GAAGTACAGTGGTCCATACATGG-C i micMur3.chrUn_NW_017968520v1 I 552 C 0 s proCoq1.NW_012140747v1 1836944 105 + 4188776 CATTCTGCCTTCTTGGATGTAACTT-CCCCCT-GGGGTTCTCTTGCTTTGATTTCCATCACTCCCATCCCACCCAAGTCCCT-GAAGTACGGTGGTCCATACATGGAC i proCoq1.NW_012140747v1 I 25 C 0 s otoGar3.GL873602 8590485 105 + 8790067 TATTTTGTTTTCCTGGACGTGGCTT-CTCCCT-GGGGTTTTCTTGCTTTGATTTCCATCACTCCCAACCTGCCCAAGTCCTA-GAAATATGGTGGTCCATATATGGAC i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47952424 105 + 63241923 CACTCTGCTTTTCTGGATGTGGC-TGCTTCCT-GGGATTCTTTTGCTCTGATTTCTATCACTCCCATCTTGTCCAAATCCTT-AAACTATGGTGGTCCATACATGGAC i canFam3.chr13 I 4 C 0 s dasNov3.JH568349 4060884 86 - 5279953 CACTCTGCCTTCCTGGGTGTGGC-T-CCCTCTCGGGGTTCTCTTGCTTTTATTT-------------------CAAGTCTCTGGAAGTATGGCAGTCC-TACATAGAC i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76394611 938 + 151834684 I a score=916962.000000 s hg38.chr4_KI270787v1_alt 26904 59 + 111943 AAAGAAATACTGCTGTCCTTGTTTCTCCTTGGCA--------------TGTGTGAGATAAGCAAACATTTTTA s panTro5.chr4 119589200 59 - 194502333 AAAGAAATACTGCTGTCCCTGTTTCTCCTTGGCA--------------TGTGTGAGATAAGCAAACATTTTTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121005471 59 - 195804263 AAAGAAATACTGCTGTCCCTGTTTCTCCTTGGCA--------------TGTGTGAGATAAGCAAACATTTTTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4436597 59 - 17550833 AAAGAAATACTGCTGTCCTTGTTTCTCCTTGGCA--------------TGTGTGAGATAAGCAAACATTTTTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69309399 59 - 118206036 AAAGAAATACTGCTGTCCTTGTTTCTCCTTGGCA--------------TGTATGAGATAAACAAACATTTTTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514196 59 - 190429646 aaagaaatactgctgtccttgtttctccttggca--------------tgtttgagataagcaaatgttttta i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682322 59 - 189454096 AAAGAAATACTGCTGTCCTTGTTTCTCCTTGGCA--------------TGTCTGAGATAAGCAAATGTTTTTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13250093 59 + 26754465 aaagaaatactgctgtccttgtttctccttggca--------------tgtctgagataagcaaatgttttta i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4152809 59 - 5137665 aaagaaatactgctgtccttgtttctccttggca--------------tgtctgagataagcaaatgtgttta i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 57747 59 - 60632 AAAGAAATACTGCTGTCCTTGTTTCTCCTTGGCA--------------TGTCTGAGATAAGCAGATGTTTTTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1968050 59 + 2427316 aaagaaatactgctgtccttgtttctccttggca--------------tgtctgagataagcaaatgtgttta i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1254686 59 + 1448899 aaagaaatactgctgtccttgttgctccttggca--------------tgtatgagataagcaaatgttttta i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990191 59 - 190850796 AAAGAAATACTGCTGCTCTTGTTTCTCCTTGGCA--------------TGTATGAGATAAGCAAGCATTTTTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8153972 59 - 15139346 aaagaaaTACTGCTGTTCCTGTTTCTCCTTGGCA--------------TGTATGAGATAAGCAAGCGTTTTTA i saiBol1.JH378162 I 319 C 0 s cebCap1.NW_016107439v1 6938194 59 - 7304997 aaagaaatactgctgttcttgtttctccttggca--------------tgtatgagataagcaagcattttta i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9354210 59 - 11631747 aaagaaatactgctgttcttgtttctccctggca--------------tgtatgagataagcaagcattttta i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1757897 58 + 3286835 AGAGAAATACTCCCATG-TTGTTTCTCCTTGGCA--------------TGTCTGAGATAAGCAAACATTTTTA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1837049 58 + 4188776 AGAGAAATACTCCCGGG-TTGTTTCTCCTTGGCA--------------TGTCTGAGATAAGCAAACATTTTTA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8590590 58 + 8790067 AAAGAAATACTCCTAGG-TTGTTTTTCCTTGGCA--------------TGTCTGAGATAAGAAGACATTTTTA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47952529 73 + 63241923 AAAGAAATATTCCTGCCCTTGTTTCTCTTTGGCAAATACTCCTGTCCTTATTTGAGATGAGCAAACATATTTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4060970 59 - 5279953 AAGGAAATACTACTGTCCCTGTTTCCTCGCGGCA--------------TAGTTGAGACAAGGAAACATTTTTA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76394611 938 + 151834684 I a score=3891388.000000 s hg38.chr4_KI270787v1_alt 26963 270 + 111943 AAGGAGAAATTTAGTAAATAGAAAGGGAGAAATAGATTTCCAAAATGCAGGTTACTGAACATAAGATTCATTCATCCCTGTGTTACCCAGCCTCAATGGATTGGTGCAGATCCTCAAATACCCTGACCAGC------TTTTTTCCCACCCAAGTGCCACCCATTATTTGACATTAGATCTTGGGG-ACCCATCCTGTTT-CCTGACTGTGGGAGATGA--TCTTCCTGTCCAGTC--TGTCATTCTGAGACAAGTTTGC--AAAATAATCAAATTAAACTTT-----GA s panTro5.chr4 119589259 270 - 194502333 AAGGAGAAATTTAGTAAATAGAAAGGGAGAAATAGATTTCCAAAATACAGGTTCCTGAACATAAGATTCATTCATCCCTGTGTTACCCAGCCTCAATGGATTGGTGCAGATCCTCAAATACCCTGACCAGC------TTTTTTCCCACCCAAGTCCCACCCATTATTTGACATTAGATCTTGGGG-ACCCATCCTGTTT-CCTGACTGTGGGAGATGA--TCTTCCTGTCCAGTC--TGTCATTCTGAGACCAGTTTGC--AAAATAATCAAATTAAACTTT-----AA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121005530 270 - 195804263 AAGGAGAAATTTAGTAAATAGAAAGGGAGAAATAGATTTCCAAAATACAGGTTCCTGAACATAAGATTCATTCATCCCTGTGTTACCCAGCCTCAATGGATTGGTGCAGATCCTCAAATACCCTGACCAGC------TTTTTTCCCACCCAAGTCCCACCCATTATTTGACATTAGATCTTGGGG-ACCCATCCTGTTT-CCTGACTGTGGGAGATGA--TCTTCCTGTCCAGTC--TGTCATTCTGAGACCAGTTTGC--AAAATAATCAAATTAAACTTT-----AA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4436656 270 - 17550833 AAGGAGAAATTTAGTAAATAGAAAGGGAGAAATAGATTTCCAAAATACAGGTTCCTGAACATAAGATTCATTCATCCCTGTGTTACCCAGCCTCAATGGATTGGTGCAGATCCTCAAATACCCTGACCAGC------TTTTTTCCCACCCAAGTCCCACCCATTATTTGACATTAGATCTTGGGG-ACCCATCCTGTTT-CCTGACTGTGAGAGATGA--TCTTCCTGTCCAGTC--TGTCATTCTGAGACCAGTTTGC--AAAATAATCAAATTAAACTTT-----AA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69309458 259 - 118206036 AAGGAGAAATTTAGTAAATAGAAAGGGAGAAATAGATTTCCAAAATACGGGTTCCTGAACATAAGATTCATTCATCCCTATATTACCCAGCCTCAATGGATTGGTGCAGATCCTCAAATACCCTGATCAGC------TTTTTTCCCACCCAAGTCTCACCTGTTATTTGACATTAGATCTTGGGG-ACCCATCCTGTTT-CCTGA------AAGA-------TTCCTGTCCAGTC--TGTCATTCTGAGACAAGTTTGC--AAAATAATCAAATTAAACTTT-----AA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514255 269 - 190429646 aaggagaaatgtagtaaatataaagggagaaGTAGATTTCCAAAATACAGGTTCCTGAACATAAGATTCGTTCATCCCTATGTTACCCAGCCTCCATAAATTGGTGCAGATCCTCAAATATCCTGACCAGC------TTTTTTCCCACCCAAGT-CCACCTGTTATTTGACATTAGATCTTGGGG-ACCCATCCTGTTT-CCTGACTGTGGGAGGTGA--TCTTCCTGTCCAGTC--TGTCATTCTGAGACAAGTTTGC--AAAATAATCAAATTAAACTTT-----AA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682381 269 - 189454096 AAGGAGAAATGTAGTAAATATAAAGGGAGAAGTAGATTTCCAAAATACAGGTTCCTGAACATAAGATTCGTTCATCCCTATGTTACCCAGCCTCCATAAATTGGTGCAGATCCTCAAATATCCTGACCAGC------TTTTTTCCCACCCAAGT-CCACCTGTTATTTGACATTAGATCTTGGGG-ACCCATCCTGTTT-CCTGACTGTGGGAGGTGA--TCTTCCTGTCCAGTC--TGTCATTCTGAGACAAGTTTGC--AAAATAATCAAATTAAACTTT-----AA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13250152 269 + 26754465 aaggagaaatgtagtaaatataaagggagaaGTAGATTTCCAAAATACAGGTTCCTGAACATAAGATTCATTCATCCCTATGTTACCCAGCCTCCATAAATTGGTGCAGATCCTCAAATATCCTGACCAGC------TTTTTTCCCACCCAAGT-CCACCTGTTATTAGACATTAGATCTTGGGG-ACCCATCCTGTTT-CCTGACTGTGGGAGGTGA--TCTTCCTGTCCAGTC--TGTCATTCTGAGACAAGTTTGC--AAAATAATCAAATCAAACTTT-----AA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4152868 268 - 5137665 aaggagaaatgtagtaaatataaagggagaaGTAGATTTCCAAAATACAGGTTCCTGAACATAAGA-TCGTTCATCCCTATGTTACCTAGCCTCCATAAATTGGTGCAGATCCTCAAATATCCTGACCAGC------TTTTTTCCCACCCAAGT-CCACCTGTTATTTGACATTAGATCTTGGGC-ACCCATCCTGTTT-CCTAACTGTGGGAGGTGA--TCTTCCTGTCCAGTC--TGTCATTCTGAGACAAGTTTGC--AAAATAATCAAATTAAACTTT-----AA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 57806 270 - 60632 AAGGAGAAATGTAGTAAATATAAAGGGAGAAGTAGATTTCCAAAATACAGGTTCCTGAACATAAGATTCATTCATCCCTATGTTACCCAGCCTCCATGGATTGGTGCAGATCCTCAAATATCCTGACCAGC------TTTTTTCCCACCCAAGTCCCACCTGTTATTTGACATTAGATCTTGGGG-ACCCATCCTGTTT-CCTGACTGTGGGAGGTGA--TCTTCCTGTCCAGTC--TGTCATTCTGAGACGAGTTTGC--AAAATAATCAAATTAAACTTT-----AA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1968109 269 + 2427316 aaggagaaatgtagtaaatataaagggagaaGTAGATTTCCAAAATACAGGTTCCTGAACATAAGATTCGTTCATCCCTATGTTACCTAGCCTCCATAAATTGGTGCAGATCCTCAAATATCCTGACCAGC------TTTTTTCCCACCCAAGT-CCACCTGTTATTTGACATTAGATCTTGGGC-ACCCATCCTGTTT-CCTAACTGTGGGAGGTGA--TCTTCCTGTCCAGTC--TGTCATTCTGAGACAAGTTTGC--AAAATAATCAAATTAAACTTT-----AA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1254745 270 + 1448899 aaggagaaatgtagtaaatataaagggagaaGTAGATTTCCAAAATACAGGTTCCCGAACATAAGATTCATTCATCCCTATGTTACCCAGCCTCCATGAATTGGTGCAGATCCTCAAATATCCTGACCAGC------TTTTTTCCCACCCAAGTCCCACCTGTTATTTGACATTAGATCTTGGGG-ACCCATCCTGTTT-CCTGACTGTGGGAGGTGA--TCTTCCTGTCCAGTC--TGTCATTCTGGGACAAGTTTGC--AAAATAATCAAATTAAACTTT-----AA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990250 270 - 190850796 AAGGAGAAATTTAGTAAATACAAAGGGAGAAGTAGATTTCCAAAATACAGGTTCCTGAACATAAGATTCATTCATCCCCATATTACCCAGTCTCAATGGATTGGTGCAGATCCTCAATTATCCTGATGAGC------TTTTTTCCGACCCAAGTCTCACCTGTTGTTTGACATTGGATCTTGGAG-ACCCATCCTGTTT-CCTGACTGTGGGAGATGA--TATTCCTGTCTAGTC--TATCATTCTGAGACAAGTTTGC--AAAATAACAGAATTAAAATGT-----AA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154031 270 - 15139346 AAGGAGAAATTTAGTAAATATAAAGGGAGAAGTAGATTTCCAAAATACAGGTTCCTGAACATAAGATTCATTCATCCCCATATTACCTAGCCTCAATGGATTGGTGCAGATCCTCAAATATCCTGATGAGG------ATTTTTCCGACTCAAGTTCCACCTGTCATTTGACATTGGATCTTGGAG-ACCTATCCTGTTT-CCTGACTGTGAGAGATGA--TATTCCTGTCTAGTC--TATCATTCTGAGACAAGTTTGC--AAAATAATAGAATTAAAATTT-----GA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6938253 270 - 7304997 aaggagaaatttagtaaatataaagggagaaGTAGATTTCTAAAATACAGGTTCCTGAACATAAGATTCATTCATCCCCATATTACCTAGTCTCAATGGATCGGTGCAGATCCTTAAATATCCTGATGAGG------TTTTTTCTGACCCAAGTTCCACCTGTTATTTGACATTGGATCTTGGAG-ACCCATCCTGTTT-CCTGACTGTGGGAGATGA--TATTCCTGTCTAGTC--TATCATTCTAAGACAAGTTTGC--AAAATAATAGAATTAAAATTT-----AA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9354269 270 - 11631747 aaggagaaatttagtaaacataaagggagaaGTAGATTTCCAAAATACAGGTTCCTGAACATAAGATTCATTCATCCCCATATTACCTAGCCTCAATGGATTGGTGCAGATCCTCAAATATCCTGATGAGG------TTTTTTCCGACCCAAGTTCCACCTGTTATTTGACATTGGATCTTGGAG-ACCCATCCTGTTT-CCTGACCATGGGAGATGA--TATTTCTGTCTAGTC--TATCATTCTGAGACAAGTTTGC--AAAATAATAGAATTAAAATTT-----AA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1757955 273 + 3286835 AAGGAGAAACTTAGTACATATGAATGGAAAAGTAGATTTCCAAAGTACAGGTTTCTGAGCATAAGATTCATCCATCCCCATAGTATCCTGCACAAGT--CCTAGTGCAGATCCCCAAATACTTTGTCCAGC------TTTATTCTGACCCAAATACCACCTGCCATTTGGCACCGGATCTTAGGG-ACCCATCCTGTTT-CCTTACTGTGGGAGATGA--TCTTCCTGTCCTGTC--TGTCATTCTGAGACAAGTTTCC--AAAGGCATCAAATTAAAGTTGAATTGAA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1837107 273 + 4188776 AAGGAGAAATTTAGTAAATATGAATGGAAAAGTAGATTTCCAAAGTACAGGATTCTGCGAATAAGATTCATCCATCCCCATATTATCCTGCACAACT--CCTGGTGCAGATCCCTAAATACTTTGTCCAGC------TTTATTCTGACCCAAATACCACCTGCCATTTGGCATTGGATCTTAGGG-ACCCATCCTGTTT-CCTTACCATGGGAGATGA--TCTACCTGTCCAGTC--GGTCATTCTGAGACAAGTTTCC--AAAGGAATCAAATTAAAATTCAGTTGAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8590648 275 + 8790067 AAAGGACAATCTAGTAAATATGAATGGAAAAGTAGATTTCCAAAGTACAAGTTTCTGAAAAAACGATTAATCCATCCCCATATTATCCTGCACAAAT--CCTGGTGCAGATCCCTAAATATCTTGCACATC------TTTATTCTGACCCAAGTACCATCTGCCCTTTGGCATTGGATCTTGGGGAACCCATGCTGTTT-CTTGTCCCCGAGAGATGATCTCTTCCTGTCCA-TC--TGTCATTCTGAGACAAGTTCCC--AAAAGAATCAAATTAAAATTGAATTGAA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76395549 216 + 151834684 AAATAGAAATTTAGTGAATTTGAAAGAGCAA--AGCTTTCCAA------GGTCTCTGAAGATGAGATTCATCGAGACC-ATATTACCAGTCC-----------------------------------CAGC------TCTTCTCAGACCTGAGTCCCACCTGACATGGGACTTTGGATCTTGACT-TCTCATTCAGTTTCCCCGATCCTAGGAGGTGA--TAGACCTGTCAAGCCCTTGTTTGTCTTAGGCAAGTTTCC---------------TAAGGCTC-----AA i mm10.chr5 I 938 C 0 s canFam3.chr13 47952602 268 + 63241923 AAGAAAAAATTTACTAAATGTGAAAGGGAAAATGGATTTCCAAAGTATAGGTTTCTGAACACAAGATCAAGCTATTTC-AT-TTATCCAGCCTCAATGGACCAGCAGAGATCCTCAGATACCTTGCCCAGC------TTTTTTCTGATCCAAGTTCCACCTGTCATTTGGTATTGGGTATTGGGG-ACCTATCTGGTTT-CCAGGTCCTGGAAGATGA--TCTAACTATTCAGTCTGTGTCATTGTGAGACAAGTTCCC--AAAAAATT--AATTAAACTTT-----TA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4061029 241 - 5279953 AAGGAGAAATTTACTGAATAGCAA-GGAAAATTAGATGACCAAAGCACAGGTTTCTGAACCTAAGAGTCTTCCACCTGCA--------GTCCTCAGTGGGCTAACCTCCATCCTCAAATCTCTTTACCACCTGTGTTTTTTTTAATGACCAAGTCCTAGCTGTCATTTGGCATTAGCTCTTGGGG-ACTTGTCCTATTT-C-----------AAATGA-------------------TA--ATTTTGAGACAAGTTTCCCCACAAAAACAGAATTCAACTTT-----AA i dasNov3.JH568349 C 0 I 8174 a score=55751.000000 s hg38.chr4_KI270787v1_alt 27233 5 + 111943 TT------CAA s panTro5.chr4 119589529 5 - 194502333 TT------CAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121005800 5 - 195804263 TT------CAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4436926 5 - 17550833 TT------CAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69309717 5 - 118206036 TT------CAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514524 5 - 190429646 TT------CAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682650 5 - 189454096 TT------CAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13250421 5 + 26754465 TT------CAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153136 5 - 5137665 TT------CAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58076 5 - 60632 TT------CAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1968378 5 + 2427316 TT------CAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255015 5 + 1448899 TT------CAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990520 4 - 190850796 -T------TGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154301 5 - 15139346 TT------TAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6938523 5 - 7304997 TT------CAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9354539 5 - 11631747 TT------CAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1758228 5 + 3286835 TT------GAA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1837380 5 + 4188776 TT------TAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8590923 5 + 8790067 TT------TAA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76395765 2 + 151834684 GT--------- i mm10.chr5 C 0 C 0 s canFam3.chr13 47952870 11 + 63241923 TTACTTAGTAA i canFam3.chr13 C 0 I 6283 s dasNov3.JH568349 4069444 5 - 5279953 TT------CAA i dasNov3.JH568349 I 8174 C 0 a score=1345582.000000 s hg38.chr4_KI270787v1_alt 27238 97 + 111943 ----ACTTGCTCTCCTTATGAATG--AA---AAAAAA-------ATTTACTTTCCCAAGAAGC----TCTTTCTTCATTGCCTATCCAAACCC-----------TTTTCATTCATTAAGA-TCCAGTTC s panTro5.chr4 119589534 98 - 194502333 ----ACTTGCTTTCCTTATGAATG-AAA---AAAAAA-------ATTTACTTTCCCAAGAAGc----tctttcttcattgcctatccaaaccc-----------ttttcattcattaaga-tccagttc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121005805 97 - 195804263 ----ACTTGCTTTCCTTATGAATG--AA---AAAAAA-------ATTTACTTTCCCAAGAAGc----tctttcttcattgcctatccaaaccc-----------ttttcattcattaaga-tccagttc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4436931 97 - 17550833 ----ACTTGCTTTCCTTATGAATG--AA---AAAAAA-------ATTTACTTTCCCAAGAAGc----tctttcttcattgcctatccaaaccc-----------ttttcattcattaaga-tccagttc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69309722 97 - 118206036 ----ATTTGCTCTCCTTATGAATG--AA---AAAAAA-------ATTTACTCGCCCAAGAAGC----TCTTTCTTCATTGCCTATCCAAACCC-----------TTTTCATTCATTAACA-TCCAGTTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514529 108 - 190429646 ----ACTTGCTTTCCTTATGAATG--AA---AAAAAA-------AATTACTCTCCCAAGAAGC----TCTTTCTTCATTGACTATCCAAACCTTAATGAATGAATTTTCATTCATTAAGA-TCCAGTTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682655 108 - 189454096 ----ACTTGCTTTCCTTATGAATG--AA---AAAAAA-------AATTACTCTCCCAAGAAGC----TCTTTCTTCATTGACTATCCAAACCTTAATGAATGAATTTTCATTCATTAAGA-TCCAGTTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13250426 108 + 26754465 ----ACTTGCTTTCCTTATGAATG--AA---AAAAAA-------AATTACTCTCCCAAGAAGC----TCTTTCTTCATTGACTATCCAAACCTTAATGAATGAATTTTCATTCATTAAGA-TCCAGTTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153141 108 - 5137665 ----ACTTGCTTTCCTTATGAATG--AA---AAAAAA-------AATTACTCTCCCAAGAAGC----TCTTTCTTCATTGACTATCCAAACCTTAATGAATGAATTTTCATTCATTAAGA-TCCAGTTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58081 110 - 60632 ----ACTTGCTTTCCTTATGAATGAAAA---AAAAAA-------AATTACTCTCCCAAGAAGC----TCTTTCTTCATTGCCTATCCAAACCTTAATGAACGAATTTTCATTCATTAAGA-TCCAGTTC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1968383 108 + 2427316 ----ACTTGCTTTCCTTATGAATG--AA---AAAAAA-------AATTACTCTCCCAAGAAGC----TCTTTCTTCATTGACTATCCAAACCTTAATGAATGAATTTTCATTCATTACGA-TCCAGTTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255020 110 + 1448899 ----ACTTGCTTTCCTTATGAATG--AAAAGAAAAAA-------AATTACTCTCCCAAGAAGC----TCTTTCTTCATTGCCTATCCAAACCTTAACG-ATGAATTTTCATTCATTAAGA-TCCAGTTC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990524 104 - 190850796 ----ACCTGCTCTCCTTATGAATG--AA---AAAAAAAAAAAATACATACTCTCCCAAGAAGC----TCTTTCTTCATTGCCTATCCAAACCC-----------TTTTCATTCATTAAGA-TCTAGTTC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154306 101 - 15139346 ----ACCTGCTCTCCTTATGAATG--AA---AAAAAAAAAA---ACATACTCTCCCAAGAAGC----TCTTTCTTCATTGCGTATCCAAATCC-----------TTTTCATTCAGTAAGA-TCTAGTTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6938528 99 - 7304997 ----ACCTGCTCTCCTTATGAATG--AA---AAAAAAAT-----ACGTACTCTCCCAAGAAGc----tctttcttcattgcctatccaaaccc-----------ttttcattcattaaga-tctagttc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9354544 98 - 11631747 ----ACCTGCTCTCCTTATGAATG--AA---AAAAAAT------ACATACTCTCCCAAGAAGc----tctttcttcattgcctatccaaaccc-----------ttttcattcattaaga-tctagttc i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1758233 100 + 3286835 ----ACATGCCCTCCCTGTGAATG--AA---AATAT--------ATTTACTTTCcctagaagctctctctttcttccctgtctatccaaacca-----------tttccattcattaaga-tccagctc i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1837385 100 + 4188776 ----ACATGCCCTCCCTATGAATG--AA---AAAAT--------Atttactctcccaagaagctctgtctttcttccctgtctatccaaacca-----------tctccattcattaaga-tccagctc i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8590928 99 + 8790067 ----ACTTGTCCTCCCTATGAGTG--AG---AAAAT--------ATTTACTCT-TCAAGAATCTCTCTCTTTCTTTACTACTTGTCCAAACCA-----------TTTCCATTCATTAAGA-TTCAGCTC i otoGar3.GL873602 C 0 I 744 s mm10.chr5 76395767 81 + 151834684 ------------------TGAATT--AA---AC-----------ATTTTTCCTGGAAGGAAGA----CTTCCATTCACTGCTGGCCCAAAGCTC----------CACCCACTCAATAAGAGTTCAGCTT i mm10.chr5 C 0 I 1 s canFam3.chr13 47959164 100 + 63241923 ----ACTTGCTCTGCTTATAAGTG--AG---AAAAC--------ATTTACTCTCCCAGGAGGCTCTCTCTTTCCTCATTGCCTGTCCAAACCT-----------TTTCCATTCTTTAAGA-TTCAGTTC i canFam3.chr13 I 6283 C 0 s dasNov3.JH568349 4069449 100 - 5279953 AATTTCTTGTTCTCTTTCT-AATG--AG---AAAGA--------ATTTACTCT-TCAAAAAGCTC--TCTTTCCTCACTGCCGACCCAAACGC-----------TTTCCATTCATTAAGA-CTCATTTC i dasNov3.JH568349 C 0 C 0 a score=8090.000000 s hg38.chr4_KI270787v1_alt 27335 1 + 111943 -A s panTro5.chr4 119589632 1 - 194502333 -a i panTro5.chr4 C 0 C 0 s panPan2.chr4 121005902 1 - 195804263 -a i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437028 1 - 17550833 -a i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69309819 1 - 118206036 -A i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514637 1 - 190429646 -A i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682763 1 - 189454096 -A i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13250534 1 + 26754465 -A i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153249 1 - 5137665 -A i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58191 1 - 60632 -A i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1968491 1 + 2427316 -A i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255130 1 + 1448899 -A i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990628 1 - 190850796 -A i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154407 1 - 15139346 -A i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6938627 1 - 7304997 -a i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9354642 1 - 11631747 -a i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1758333 1 + 3286835 -a i micMur3.chrUn_NW_017968520v1 C 0 I 646 s proCoq1.NW_012140747v1 1837485 1 + 4188776 -a i proCoq1.NW_012140747v1 C 0 I 956 s otoGar3.GL873602 8591771 1 + 8790067 -A i otoGar3.GL873602 I 744 C 0 s canFam3.chr13 47959264 1 + 63241923 -A i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4069549 1 - 5279953 T- i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76395848 1 + 151834684 I a score=209037.000000 s hg38.chr4_KI270787v1_alt 27336 15 + 111943 CATTCTATCTGATCA s panTro5.chr4 119589633 15 - 194502333 cattctatctgatca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121005903 15 - 195804263 cattctatctgatca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437029 15 - 17550833 cattctatctgatca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69309820 15 - 118206036 CATTCTATTTGATCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514638 15 - 190429646 CATTCTATCTGATCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682764 15 - 189454096 CATTCTATCTGATCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13250535 15 + 26754465 CATTCTATCTGATCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153250 15 - 5137665 CATTCTATCTGATCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58192 15 - 60632 CATTCTACCTGATCA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1968492 15 + 2427316 CATTCTATCTGATCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255131 15 + 1448899 CATTCTATCTGATCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990629 15 - 190850796 CATTCTCTCTGATCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154408 15 - 15139346 CATTTTATCTGATCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6938628 15 - 7304997 cattctatctgatca i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9354643 15 - 11631747 cattctgtctgatca i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8591772 15 + 8790067 CATGCTATCTGATCC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76395849 10 + 151834684 CACTCTGTCT----- i mm10.chr5 I 1 C 0 s canFam3.chr13 47959265 15 + 63241923 CATTCTATCTGACCA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4069550 15 - 5279953 CATTTTATATTACCA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e micMur3.chrUn_NW_017968520v1 1758334 646 + 3286835 I a score=1499601.000000 s hg38.chr4_KI270787v1_alt 27351 122 + 111943 CTCTGGGTTATATTACTGTCT---TTCTCTAAA----TAGCTACCTACCTACCATTTATGTAAGCCAACAAAGCATTTATTTACATATGGGTTTATTCCCAAATTGTGGCAGCAAAGCCATAAACTTCT s panTro5.chr4 119589648 122 - 194502333 ctctgggttatattactgtct---ttctctaaa----tagctacctacctaccatttatgtgagccaacaaagcacttatttacatatgggtttattcccaaattgtGGCAGCAAAGCCATAAACTTCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121005918 122 - 195804263 ctctgggttatattactgtct---ttctctaaa----tagctacctacctaccatttatgtgagccaacaaagcacttatttacatatgggtttattcccaaattgtGGCAGCAAAGCCATAAACTTCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437044 122 - 17550833 ctctgggttatattactgtct---ttctctaaa----tagctacctacctaccatttatgtaagccaacaaagcatttatttacatatgggtttattcccaaattgtGGCAGCAAAGCCATAAACTTCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69309835 122 - 118206036 CTCTGGGTTATATTACTGTCT---TTCTCTAAA----TAGCTACCTACCTACCATTTATATAAACCAACAGAGCATTTATTTACATATGGGTTTATTCCCAAATTGTGGCAGCAAAGCCATAAACTTCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514653 118 - 190429646 CTCTGGGTTATATTACTGTCC---TTCTC--------TAGCTACCTACCTACCATGTATATAAGACAACAGAGCATTTATTTACATAGGGATTTATTCGCAAATTGTGGCAGCAAAGCCATAAACTTCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682779 118 - 189454096 CTCTGGGTTATATTACTGTCC---TTCTC--------TAGCTACCTACCTACCATGTATATAAGACAACAGAGCATTTATTTACATAGGGATTTATTCGCAAATTGTGGCAGCAAAGCCATAAACTTCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13250550 118 + 26754465 CTCTGGGTTATATTACTGTCC---TTCTC--------TAGCTACCTACCTACCATGTATATAAGACAACAGAGCATTTATTTACATAGGGATTTATTCGCAAATTGTGGCAGCAAAGCCATAAACTTCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153265 118 - 5137665 CTCTGGGTTATATTACTGTCC---TTCTC--------TAGCTACCTACCTACCATGTATATAAGACAACAGAGCATTTATTTACATAGGGATTTATTCGCAAATTGTGGCAGCAAAGCCATAAACTTCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58207 122 - 60632 CTCTGGGTTATATTACTGTCC---TTCTCTAAA----TAGCTACCTACCTACCATGTATATAAGACAACAGAGCATTTATTTACATAGGGATTTATTCCCAAATTGTGGCAGCAAAGCCATAAACTTCT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1968507 118 + 2427316 CTCTGGGTTATATTACTGTCC---TTCTC--------TAGCTACCTACCTACCATGTATATAAGACAACAGAGCATTTATTTACACAGGGATTTATTCGCAAATTGTGGCAGCAAAGCCATAAACTTCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255146 122 + 1448899 CTCTGGGTTATATTACTGTCT---TTCTCTAAA----TAGCTACCTATCTACCATGTATATAAGACAACAGAGCATTTATTTACATAGGGATTCATTCCCAAATTGTGGCAGCAAAGCCATAAACTTCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990644 122 - 190850796 CTCTGGGTTATAGTATTGTCT---TTCTCTAAA----TAGCTATGTACTTACCATTTATATAAGCCAACAGAGCATTTATTTACATATGGGTGTATTCCCAAATTGTCGCAGCAAAACCATAAATTTTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154423 122 - 15139346 CTCTGGATTATAGTATTGTCT---TTCTCTAAA----TAGCTATGTACTTACCATTTATATAAGCCAACAGAGCATTTATTTACATATGGGTATATTCCCAAATTGTGGCAGCAAAGCCATAAACTTCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6938643 122 - 7304997 ctctgggttatagtattgtct---ttctctaaa----cagctatgtacttaccatttatataagccaacagagcatttatttacataTGGGTATATTCCCAAATTGTGGCAGCAAAGCCATAAACTTCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9354658 122 - 11631747 ctctgggttatagtattgtct---ttctctaaa----tagctatgtacttaccattcatataagccaacagagcatttatttacataTGGGTATATTCCCAAATTGTGGCAGCAAAGCCATAAACTTCT i aotNan1.NW_018493494v1 C 0 I 61 s micMur3.chrUn_NW_017968520v1 1758980 122 + 3286835 CTCTAGGTCATATCACTATCT---TTCTCTAAA----CGGCTACCTACCTACCATTTATAGAAGAAAACAGAGCACTTATTTACATACAGTTTTATTCTCAAATTGTGGcagcaaagctgtaaactcct i micMur3.chrUn_NW_017968520v1 I 646 C 0 s otoGar3.GL873602 8591787 117 + 8790067 CTCTGAGTCATGTTACTATCT---TTCTCT-AA----TGGCTACCTACCTATCATTTACAGAGGACAACAGAGCACTTA-TCACATATGGTTTTATTCTCAAATTGTAGCAG--AAGCTGTAAACTCC- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76395859 92 + 151834684 CACTGAGTGACG----------------------------------GCCTCCAAGTTTAGTAA--CAGCAAAAGACTGCTTCTCACACAGTTTTATTCAGAAATTATGACAA-AAAGCTATAAACTCCT i mm10.chr5 C 0 C 0 s canFam3.chr13 47959280 114 + 63241923 CTGCAGATCACATTACTACCC---TTCCCTAAA----CAGCTACTTATCTACCATTTATATAAGGCAACAGAGTACTTATTTATATGTGGTCTTATTCTCAAATAGTGGCAGCAAACTCTT-------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4069565 92 - 5279953 CTACACATCACCCTAGTTTCTGCCTTCTCTAAGAGTCAACTTACCTATCTACAATTTAAATAAAAACAAAGAATACTTA--CACACATGGTTTT----------------------------------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I a score=43704.000000 s hg38.chr4_KI270787v1_alt 27473 3 + 111943 CAA s panTro5.chr4 119589770 3 - 194502333 CAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006040 3 - 195804263 CAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437166 3 - 17550833 CAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69309957 3 - 118206036 CAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514771 3 - 190429646 CAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682897 3 - 189454096 CAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13250668 3 + 26754465 CAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153383 3 - 5137665 CAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58329 3 - 60632 CAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1968625 3 + 2427316 CAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255268 3 + 1448899 CAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990766 3 - 190850796 CAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154545 3 - 15139346 CAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6938765 3 - 7304997 CAA i cebCap1.NW_016107439v1 C 0 I 57 s micMur3.chrUn_NW_017968520v1 1759102 3 + 3286835 caa i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8591904 1 + 8790067 --A i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76395951 3 + 151834684 CAA i mm10.chr5 C 0 C 0 s canFam3.chr13 47959394 3 + 63241923 CAA i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e dasNov3.JH568349 4069657 0 - 5279953 C e aotNan1.NW_018493494v1 9354780 61 - 11631747 I a score=13600.000000 s hg38.chr4_KI270787v1_alt 27476 1 + 111943 G s panTro5.chr4 119589773 1 - 194502333 G i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006043 1 - 195804263 G i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437169 1 - 17550833 G i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69309960 1 - 118206036 G i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514774 1 - 190429646 G i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682900 1 - 189454096 G i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13250671 1 + 26754465 G i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153386 1 - 5137665 G i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58332 1 - 60632 G i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1968628 1 + 2427316 G i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255271 1 + 1448899 G i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990769 1 - 190850796 G i calJac3.chr3 C 0 I 41 s saiBol1.JH378162 8154548 1 - 15139346 G i saiBol1.JH378162 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1759105 1 + 3286835 g i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8591905 1 + 8790067 G i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47959397 1 + 63241923 G i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e mm10.chr5 76395954 0 + 151834684 C e dasNov3.JH568349 4069657 0 - 5279953 C e aotNan1.NW_018493494v1 9354780 61 - 11631747 I e cebCap1.NW_016107439v1 6938768 57 - 7304997 I a score=275202.000000 s hg38.chr4_KI270787v1_alt 27477 32 + 111943 GGTAGAGACAATGTCATAATATTT-------TATTATTA s panTro5.chr4 119589774 32 - 194502333 GGTAGAGACAATGTCATAATCTTT-------TATTATTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006044 32 - 195804263 GGTAGAGACAATGTCATAATCTTT-------TATTATTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437170 32 - 17550833 GGTAGAGACAATGTCATAATCTTT-------TATTATTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69309961 32 - 118206036 GGTAGAGACAATGTCATAATCTTT-------TATTATTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514775 32 - 190429646 GGTAGAGACAATATCATAATCTTT-------TATTATTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682901 32 - 189454096 GGTAGAGACAATATCATAATCTTT-------TATTATTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13250672 32 + 26754465 GGTAGAGACAATATCATAATCTTT-------TATTATTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153387 32 - 5137665 GGTAGAGACAATATCATAATCTTT-------TATTATTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58333 32 - 60632 GGTAGAGACAATATCATAATCTTA-------TATTATTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1968629 32 + 2427316 GGTAGAGACAATATCATAATCTTT-------TATTATTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255272 32 + 1448899 GGTAGAGACAATATCATAATCTTT-------TATTATTA i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1759106 32 + 3286835 ggtagagacaatgccataatcttt-------tatTATTA i micMur3.chrUn_NW_017968520v1 C 0 I 92 s otoGar3.GL873602 8591906 32 + 8790067 AGTAGAGACAATGCCATATTCTTT-------TATCATTA i otoGar3.GL873602 C 0 I 9 s mm10.chr5 76395954 39 + 151834684 GGTAAAGAGGATGTTATAATCTTTTAGGGAGTATTCTTC i mm10.chr5 C 0 C 0 s canFam3.chr13 47959398 29 + 63241923 AATAGAGACAATGTCA-AATCTTT-------TAATTC-- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4069657 10 - 5279953 ----------------------TT-------TGTTGTTG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e aotNan1.NW_018493494v1 9354780 61 - 11631747 I e cebCap1.NW_016107439v1 6938768 57 - 7304997 I e saiBol1.JH378162 8154549 0 - 15139346 C e calJac3.chr3 52990770 41 - 190850796 I a score=139678.000000 s hg38.chr4_KI270787v1_alt 27509 27 + 111943 CTG-----TC--TGTTATA-ACTTGAAATGTAAA---T- s panTro5.chr4 119589806 27 - 194502333 CTG-----TC--TGTTATA-ACTTGAAATGTAAA---T- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006076 27 - 195804263 CTG-----TC--TGTTATA-ACTTGAAATGTAAA---T- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437202 27 - 17550833 CTG-----TC--TGTTGTA-ACTTGAAATGTAAA---T- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69309993 27 - 118206036 CTG-----TC--TGTTATA-ACTTGAAATGTAAA---T- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514807 27 - 190429646 CTG-----TC--TGTTATA-ACTTGAAATGTAAAt---- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682933 26 - 189454096 CTG-----TC--TGTTATA-ACTTGAAATGTAAA----- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13250704 26 + 26754465 CTG-----TC--TGTTATA-ACTTGAAATGTGAA----- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153419 26 - 5137665 CTG-----TC--TGTTATA-ACTTGAAATGTAAA----- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58365 27 - 60632 CTG-----TC--TGTTATA-ACTTGAAATGTAAA-t--- i chlSab2.chr7_KE147969v1_random C 0 I 17 s manLeu1.NW_012104388v1 1968661 27 + 2427316 CTG-----TC--TGTTATA-ACTTGAAATGTAAA-t--- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255304 27 + 1448899 CTG-----TC--TGTTATA-ACTTGAAATGTAAA--t-- i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8591947 31 + 8790067 CTGTCCATTC--CATTATA-GTTTGAAACTTAAA----- i otoGar3.GL873602 I 9 I 1 s mm10.chr5 76395993 27 + 151834684 TTG-----CT--TCTCACAGGATTGAAACCCAAA----- i mm10.chr5 C 0 I 1 s canFam3.chr13 47959427 26 + 63241923 CTA-----CC--TGCTTTA-ACTTGAAACTTCAA----- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4069667 29 - 5279953 ATG-----TCGTTGTTTTT-accttgtatgtaga----a i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I e aotNan1.NW_018493494v1 9354780 61 - 11631747 I e cebCap1.NW_016107439v1 6938768 57 - 7304997 I e saiBol1.JH378162 8154549 0 - 15139346 C e calJac3.chr3 52990770 41 - 190850796 I a score=1491.000000 s hg38.chr4_KI270787v1_alt 27536 2 + 111943 -GT s panTro5.chr4 119589833 2 - 194502333 -GT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006103 2 - 195804263 -GT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437229 2 - 17550833 -GT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310020 2 - 118206036 -GT i nomLeu3.chr9 C 0 C 0 s otoGar3.GL873602 8591979 2 + 8790067 -GT i otoGar3.GL873602 I 1 C 0 s mm10.chr5 76396021 2 + 151834684 -GT i mm10.chr5 I 1 I 37 s dasNov3.JH568349 4069696 2 - 5279953 ag- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I e aotNan1.NW_018493494v1 9354780 61 - 11631747 I e cebCap1.NW_016107439v1 6938768 57 - 7304997 I e saiBol1.JH378162 8154549 0 - 15139346 C e calJac3.chr3 52990770 41 - 190850796 I e canFam3.chr13 47959453 0 + 63241923 C e colAng1.NW_012119221v1 1255331 0 + 1448899 C e manLeu1.NW_012104388v1 1968688 0 + 2427316 C e chlSab2.chr7_KE147969v1_random 58392 17 - 60632 I e cerAty1.NW_012001307v1 4153445 0 - 5137665 C e macNem1.NW_012012466v1 13250730 0 + 26754465 C e rheMac8.chr5 111514834 0 - 190429646 C e macFas5.chr5 110682959 0 - 189454096 C a score=2865.000000 s hg38.chr4_KI270787v1_alt 27538 2 + 111943 TG s panTro5.chr4 119589835 2 - 194502333 TG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006105 2 - 195804263 TG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437231 2 - 17550833 TG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310022 2 - 118206036 TG i nomLeu3.chr9 C 0 C 0 s dasNov3.JH568349 4069698 2 - 5279953 tg i dasNov3.JH568349 C 0 I 40 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I e mm10.chr5 76396023 37 + 151834684 I e aotNan1.NW_018493494v1 9354780 61 - 11631747 I e cebCap1.NW_016107439v1 6938768 57 - 7304997 I e saiBol1.JH378162 8154549 0 - 15139346 C e calJac3.chr3 52990770 41 - 190850796 I e otoGar3.GL873602 8591981 0 + 8790067 C e canFam3.chr13 47959453 0 + 63241923 C e colAng1.NW_012119221v1 1255331 0 + 1448899 C e manLeu1.NW_012104388v1 1968688 0 + 2427316 C e chlSab2.chr7_KE147969v1_random 58392 17 - 60632 I e cerAty1.NW_012001307v1 4153445 0 - 5137665 C e macNem1.NW_012012466v1 13250730 0 + 26754465 C e rheMac8.chr5 111514834 0 - 190429646 C e macFas5.chr5 110682959 0 - 189454096 C a score=2923.000000 s hg38.chr4_KI270787v1_alt 27540 31 + 111943 CATTTCtgttttttgtttttg-----tttttgtt-----tg s panTro5.chr4 119589837 24 - 194502333 CA-------TTTTTGTTTTTG-----tttttgtt-----tg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006107 24 - 195804263 CA-------TTTTTGTTTTTG-----tttttgtt-----tg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437233 24 - 17550833 CA-------TTTTTGTTTTTG-----tttttgtt-----tg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310024 19 - 118206036 CA-------ttt---tttttg-----tttttgtt------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514834 14 - 190429646 ---------------tttttt-----ttttcttt------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682959 14 - 189454096 ---------------tttttt-----ttttcttt------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13250730 14 + 26754465 ---------------tttttt-----ttttcttt------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153445 19 - 5137665 ---------------tttttttttccttttcttt------- i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 1968688 21 + 2427316 -------------tttttttt-----ttttcttttcttt-- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255331 17 + 1448899 ------------tttcttttc-----ttttcttt------- i colAng1.NW_012119221v1 C 0 C 0 s canFam3.chr13 47959453 10 + 63241923 --------------------------TCTTTGTT-----GG i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I e mm10.chr5 76396023 37 + 151834684 I e dasNov3.JH568349 4069700 40 - 5279953 I e aotNan1.NW_018493494v1 9354780 61 - 11631747 I e cebCap1.NW_016107439v1 6938768 57 - 7304997 I e saiBol1.JH378162 8154549 0 - 15139346 C e calJac3.chr3 52990770 41 - 190850796 I e otoGar3.GL873602 8591981 0 + 8790067 C e chlSab2.chr7_KE147969v1_random 58392 17 - 60632 I a score=3998.000000 s hg38.chr4_KI270787v1_alt 27571 16 + 111943 ----tttgtttgtttgtttg s panTro5.chr4 119589861 12 - 194502333 ----tttgtttgtttg---- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006131 12 - 195804263 ----tttgtttgtttg---- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437257 12 - 17550833 ----tttgtttgtttg---- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310043 8 - 118206036 --------tttatttt---- i nomLeu3.chr9 C 0 C 0 s canFam3.chr13 47959463 12 + 63241923 ----ATTGAATATTAC---- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4069740 16 - 5279953 ctagtttttttctttg---- i dasNov3.JH568349 I 40 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I e mm10.chr5 76396023 37 + 151834684 I e aotNan1.NW_018493494v1 9354780 61 - 11631747 I e cebCap1.NW_016107439v1 6938768 57 - 7304997 I e saiBol1.JH378162 8154549 0 - 15139346 C e calJac3.chr3 52990770 41 - 190850796 I e otoGar3.GL873602 8591981 0 + 8790067 C e colAng1.NW_012119221v1 1255348 0 + 1448899 C e manLeu1.NW_012104388v1 1968709 0 + 2427316 C e chlSab2.chr7_KE147969v1_random 58392 17 - 60632 I e cerAty1.NW_012001307v1 4153464 0 - 5137665 C e macNem1.NW_012012466v1 13250744 0 + 26754465 C e rheMac8.chr5 111514848 0 - 190429646 C e macFas5.chr5 110682973 0 - 189454096 C a score=102344.000000 s hg38.chr4_KI270787v1_alt 27587 24 + 111943 tttttttgagatggagtctcgctc s panTro5.chr4 119589873 22 - 194502333 --tttttgagatggagtctcgctc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006143 22 - 195804263 --tttttgagatggagtctcgctc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437269 22 - 17550833 --tttttgagatggagtctcgctc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310051 22 - 118206036 --tttttgagatggagtctcactc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514848 24 - 190429646 tcttttttaagcagaatctcactc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682973 24 - 189454096 tcttttttaaacagaatctcactc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13250744 24 + 26754465 tcttttttaaacagaatctcattc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153464 24 - 5137665 tcttttttaaacagaatctcactc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58409 24 - 60632 tcttttttaaacagaatctcactc i chlSab2.chr7_KE147969v1_random I 17 C 0 s manLeu1.NW_012104388v1 1968709 24 + 2427316 tcttttttaaacagaatctcactc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255348 24 + 1448899 tcttttttaaacagaatctcgctc i colAng1.NW_012119221v1 C 0 C 0 s canFam3.chr13 47959475 17 + 63241923 ---TCTTTAA----AGTTTTTCTC i canFam3.chr13 C 0 I 4 s dasNov3.JH568349 4069756 17 - 5279953 tttttttaggaagtagg------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I e mm10.chr5 76396023 37 + 151834684 I e aotNan1.NW_018493494v1 9354780 61 - 11631747 I e cebCap1.NW_016107439v1 6938768 57 - 7304997 I e saiBol1.JH378162 8154549 0 - 15139346 C e calJac3.chr3 52990770 41 - 190850796 I e otoGar3.GL873602 8591981 0 + 8790067 C a score=1328278.000000 s hg38.chr4_KI270787v1_alt 27611 273 + 111943 tgtcacccaggctggagtgcagtggtgcaatcttggctccctgcaagctctgcctcccgggttcacaccattctcctgcctcagcctcctcagtagctgggactgca--ggtgcccaccaccgcacatggctaa-------------tttttttttttttttgtatttttagtagagatggggtttcaccatgttagccaggatggtcttgatctcctgacctcatgatcagcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccacacctggcc s panTro5.chr4 119589895 277 - 194502333 tgtcacccaggctggagtgcagtggtgcaatcttggctccctgcaagctctacctcgcgggttcacaccattctcctgcctcagcctcctcagtagctgggactgca--ggtgcccaccaccgcacatggctaa---------tttttttttttttttttttgtatttttagtagagacagggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacacctggcc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006165 272 - 195804263 tgtcacccaggctggagtgcagtggtgcaatcttggctccctgcaagctctacctcgcgggttcacaccattctcctgcctcagcctcctcagtagctgggactgca--ggtgcccaccaccgcacatggctta--------------ttttttttttttttgtatttttagtagagacagggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtaagccaccacacctggcc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437291 286 - 17550833 tgtcacccaggctggagtgcagtggtgcaatcttggctccctgcaagctctgcctcgcgggttcacaccattctcctgcctcagcctcctcagtagctgggactgca--ggtgcccaccaccgcacatggctaattttttttttttttttttttttttttttgtatttttagtagagacagggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccacacctggcc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310073 271 - 118206036 tgtcacccaggctggagtgcagtggtgcaatctcggctccctgcaagctctgcctccctggttcacaccattctcctgcctcagcctcctaagtagctggaactaca--ggtgcccaacaccatacatggctaa---------------ttttttttttcttgtgtttttagtagagacggggtttcaccatgttagccaggatgatctccatctcctgacctcatgatctgcccgccttggcctcccaaagtgctgggattacaggcatgagccaccacatctggcc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111514872 269 - 190429646 tgtcgcccaggctggagtgcagtgctgccatctcagctcactgcaagctccgcctcctgggttcatgccgctcccctgcctcagcttcctgagtagctaggactaca--ggcgcctgtcaccacacccggctaa-----------------tatatatatatatatttttagtagcgatgaggtttcactgtgttagccagggtggtctcgatctcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtaagccaccacacctagcc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110682997 269 - 189454096 tgtcgcccaggctggagtgcagtgctgccatctcagctcactgcaagctccgcctcctgggttcatgccactcccctgcctcagcttcctgagtagctaggactaca--ggcgcctgtcaccacacccggctaa-----------------tatatatatatatatttttagtagcgatgaggtttcactgtgttagccagggtggtctcgatctcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtaagccaccacacctagcc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13250768 267 + 26754465 tgtcgcccaggctggagtgcagtgctgccatctcagctcactgcaagctccgcctcctgggttcatgccactcccctgcctcagcttcctaagtagctaggactaca--ggcgcctgtcaccacacccggcta-------------------atatatatatatttttttagtagcaatgaggtttcactgtgttagccagggtggtctcgatctcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtaagccaccacacctggcc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153488 268 - 5137665 tgtcgcccaggctggagtgcagtgctgccatctcagctcactgcaagctccgcctcctgggttcatgccactcccctgcctcagcttcctgagtagctaggactaca--ggcgcctgtcaccacacccggctaa-----------------t-tttttttttttttttttagtagagatggggtttcactgtgttagccagggtggtctcgatctcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtaagccaccacacccagcc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58433 273 - 60632 tgttgcccaggctggagtgcagcagtgccatctcagctcactgcaagctccgcctcctgggttcatgccactcccctgcctcagcttcctgagtagctaggactaca--ggcgcctgccaccacacccggctaa-------------tttttttttttttttttttttttagtagcgatgaggtttcactgtgttagccagggtggtctctatctcctgacctcatgatccgcctgcctcagcctcccaaagtgctgggattataggtgtaagccaccacacctggcc i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1968733 267 + 2427316 tgtcgcccaggctggagtgcagtgctgccatctcagctcactgcaagctccgcctcctgggttcatgccactcccctgcctcagcttcctgagtagctaggactaca--ggcgcctgtcaccacacccggctaa-------------------tttttttttttttttttagtagcgatgaggtttcactgtgttagccagggtggtctcgatctcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcataagccaccacacccagcc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255372 268 + 1448899 tgtcacccaggctggagtgcagtggtgccatttcagctcactgcaagttctgcctcctgggttcatgccactcccctgcctcagcttcctgagtagctaggactaca--ggtgcctgccaccacacctggctaa-----------------t-tttttttttttttttttagtagagatgaggtttcactgtgttagccagggtggtctcgatctcctgacctcatgatctgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacatccggcc i colAng1.NW_012119221v1 C 0 C 0 s dasNov3.JH568349 4069773 152 - 5279953 --------------------agggatgaaa-------------------------cccggg---accccatacatgggaagcaggcacttaacca-cttgagctacatctgctcccATATACACATATGGTTAT-------------------------TCTCAAATTGTGGcagtaa--agctgtaaacttctca---agggtagagacaatgtcat------attatttttTTGT--------------------------------------------------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I e mm10.chr5 76396023 37 + 151834684 I e aotNan1.NW_018493494v1 9354780 61 - 11631747 I e cebCap1.NW_016107439v1 6938768 57 - 7304997 I e saiBol1.JH378162 8154549 0 - 15139346 C e calJac3.chr3 52990770 41 - 190850796 I e otoGar3.GL873602 8591981 0 + 8790067 C e canFam3.chr13 47959492 4 + 63241923 I a score=7397.000000 s hg38.chr4_KI270787v1_alt 27884 1 + 111943 C s panTro5.chr4 119590172 1 - 194502333 C i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006437 1 - 195804263 C i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437577 1 - 17550833 C i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310344 1 - 118206036 C i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515141 1 - 190429646 C i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110683266 1 - 189454096 C i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251035 1 + 26754465 C i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153756 1 - 5137665 C i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58706 1 - 60632 C i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969000 1 + 2427316 C i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255640 1 + 1448899 C i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8154549 1 - 15139346 C i saiBol1.JH378162 C 0 C 0 s dasNov3.JH568349 4069925 1 - 5279953 T i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I e mm10.chr5 76396023 37 + 151834684 I e aotNan1.NW_018493494v1 9354780 61 - 11631747 I e cebCap1.NW_016107439v1 6938768 57 - 7304997 I e calJac3.chr3 52990770 41 - 190850796 I e otoGar3.GL873602 8591981 0 + 8790067 C e canFam3.chr13 47959492 4 + 63241923 I a score=77721.000000 s hg38.chr4_KI270787v1_alt 27885 15 + 111943 TGAAATGTAAATGTT- s panTro5.chr4 119590173 15 - 194502333 TGAAATGTAAATGTT- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006438 15 - 195804263 TGAAATGTAAATGTT- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437578 15 - 17550833 TGAAATGTAAATGTT- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310345 15 - 118206036 TGAAATGTAAATGTT- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515142 13 - 190429646 TGAAATGTAAA--TT- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110683267 13 - 189454096 TGAAATGTAAA--TT- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251036 13 + 26754465 TGAAATGTAAA--TT- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153757 13 - 5137665 TGAAATGTAAA--TT- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58707 13 - 60632 TGAAGTGTAGA--TT- i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969001 13 + 2427316 TGAAATGTAAA--TT- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255641 13 + 1448899 TGAAATGTAAA--TT- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990811 14 - 190850796 TGAGATGTAAAT-GT- i calJac3.chr3 I 41 C 0 s saiBol1.JH378162 8154550 14 - 15139346 TGAAATGTAAAT-GT- i saiBol1.JH378162 C 0 C 0 s dasNov3.JH568349 4069926 14 - 5279953 TGAAACATAAA--TCT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I e mm10.chr5 76396023 37 + 151834684 I e aotNan1.NW_018493494v1 9354780 61 - 11631747 I e cebCap1.NW_016107439v1 6938768 57 - 7304997 I e otoGar3.GL873602 8591981 0 + 8790067 C e canFam3.chr13 47959492 4 + 63241923 I a score=213189.000000 s hg38.chr4_KI270787v1_alt 27900 37 + 111943 GTATTTCTTGGAT----TG----TTATTTTTCAGTTA------TTTAAAAA s panTro5.chr4 119590188 33 - 194502333 GTATTTCTTGGAT----TG----TTATTTTTCAGTTA------TTT----A i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006453 32 - 195804263 GTATTTCTTGGAT----TG----TTATTTTTCAGTTA------TTT----- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437593 34 - 17550833 GTATTTCTTGGAT----TG----TTATTTTTCAGTTA------TTT---AA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310360 37 - 118206036 GTATCTGTTGGAC----TG----TTATTCTTCAGTTG------TTTTTTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515155 37 - 190429646 ATATTTGTTGGAT----TG----TTATTCTTCAGTTA------TTTaaaaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110683280 34 - 189454096 ATATTTGTTGGAT----TG----TTATTCTTCAGTTA------TTT---AA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251049 34 + 26754465 ATATTTGTTGGAT----TG----TTATTCTTCAGTTA------TTt---aa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153770 34 - 5137665 ATATTTGTTGGAT----TG----TTATTCCTCAGTTA------TTt---aa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58720 34 - 60632 ATATTTGTTGGAT----TG----TTATTCTTCAGTTA------TTT---AA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969014 34 + 2427316 ATATTTGTTGGAT----TG----TTATTCTTCAGTTA------TTT---AA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255654 34 + 1448899 ATATTTGTTGGAT----TG----TTATTCTTCAGTTA------TTT---TT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990825 36 - 190850796 GTATTTGTTGGATTGAATG----TTATTCTTCAGTAA------TTT----- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154564 42 - 15139346 GTATTTGTTGGATTGAATG----TTATTCTTCAGttattttttttt----- i saiBol1.JH378162 C 0 C 0 s otoGar3.GL873602 8591981 41 + 8790067 GTATTTATTGCAT----TGAAGATGACTCTTTAGTTT------TTTTTAAA i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4069940 38 - 5279953 GTATTTATTGGAT----TG---AATGCTCCTCATATT------TTTTTCAA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I e mm10.chr5 76396023 37 + 151834684 I e aotNan1.NW_018493494v1 9354780 61 - 11631747 I e cebCap1.NW_016107439v1 6938768 57 - 7304997 I e canFam3.chr13 47959492 4 + 63241923 I a score=-4699.000000 s hg38.chr4_KI270787v1_alt 27937 2 + 111943 -AA s panTro5.chr4 119590221 2 - 194502333 -AA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006485 2 - 195804263 -AA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437627 2 - 17550833 -AA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310397 2 - 118206036 -TA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515192 2 - 190429646 -aa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110683314 2 - 189454096 -AA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251083 2 + 26754465 -aa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153804 2 - 5137665 -aa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58754 2 - 60632 -AA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969048 2 + 2427316 -AA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255688 2 + 1448899 -TT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990861 2 - 190850796 -AA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154606 2 - 15139346 -ta i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9354841 2 - 11631747 -AA i aotNan1.NW_018493494v1 I 61 C 0 s otoGar3.GL873602 8592022 1 + 8790067 --A i otoGar3.GL873602 C 0 I 1 s dasNov3.JH568349 4069978 1 - 5279953 C-- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1837486 956 + 4188776 I e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I e mm10.chr5 76396023 37 + 151834684 I e cebCap1.NW_016107439v1 6938768 57 - 7304997 I e canFam3.chr13 47959492 4 + 63241923 I a score=10920.000000 s hg38.chr4_KI270787v1_alt 27939 1 + 111943 A s panTro5.chr4 119590223 1 - 194502333 A i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006487 1 - 195804263 A i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437629 1 - 17550833 A i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310399 1 - 118206036 A i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515194 1 - 190429646 a i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110683316 1 - 189454096 A i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251085 1 + 26754465 a i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153806 1 - 5137665 a i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58756 1 - 60632 A i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969050 1 + 2427316 A i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255690 1 + 1448899 A i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990863 1 - 190850796 A i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154608 1 - 15139346 a i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9354843 1 - 11631747 A i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1838442 1 + 4188776 A i proCoq1.NW_012140747v1 I 956 C 0 e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I e mm10.chr5 76396023 37 + 151834684 I e dasNov3.JH568349 4069979 0 - 5279953 C e cebCap1.NW_016107439v1 6938768 57 - 7304997 I e otoGar3.GL873602 8592023 1 + 8790067 I e canFam3.chr13 47959492 4 + 63241923 I a score=24752.000000 s hg38.chr4_KI270787v1_alt 27940 2 + 111943 AA s panTro5.chr4 119590224 2 - 194502333 AA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006488 2 - 195804263 AA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437630 2 - 17550833 AA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310400 2 - 118206036 AA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515195 2 - 190429646 aa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110683317 2 - 189454096 AA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251086 2 + 26754465 aa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153807 2 - 5137665 aa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58757 2 - 60632 AA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969051 2 + 2427316 AA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255691 2 + 1448899 AA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990864 2 - 190850796 AA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154609 2 - 15139346 aa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6938825 2 - 7304997 AA i cebCap1.NW_016107439v1 I 57 C 0 s aotNan1.NW_018493494v1 9354844 2 - 11631747 AA i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1838443 2 + 4188776 AA i proCoq1.NW_012140747v1 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I e mm10.chr5 76396023 37 + 151834684 I e dasNov3.JH568349 4069979 0 - 5279953 C e otoGar3.GL873602 8592023 1 + 8790067 I e canFam3.chr13 47959492 4 + 63241923 I a score=65977.000000 s hg38.chr4_KI270787v1_alt 27942 5 + 111943 AAAAA s panTro5.chr4 119590226 5 - 194502333 AAAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006490 5 - 195804263 AAAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437632 5 - 17550833 AAAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310402 5 - 118206036 AAAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515197 5 - 190429646 aaaaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110683319 5 - 189454096 AAAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251088 5 + 26754465 aaaaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153809 5 - 5137665 aaaaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58759 5 - 60632 AAAAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969053 5 + 2427316 AAAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255693 5 + 1448899 AAAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990866 5 - 190850796 AAAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154611 5 - 15139346 aaaaa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6938827 5 - 7304997 AAAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9354846 5 - 11631747 AAAAA i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1838445 5 + 4188776 AAAAA i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76396060 5 + 151834684 AAAAT i mm10.chr5 I 37 C 0 e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I e dasNov3.JH568349 4069979 0 - 5279953 C e otoGar3.GL873602 8592023 1 + 8790067 I e canFam3.chr13 47959492 4 + 63241923 I a score=81998.000000 s hg38.chr4_KI270787v1_alt 27947 9 + 111943 CAT-GGACTA s panTro5.chr4 119590231 9 - 194502333 CAT-AGACTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006495 9 - 195804263 CAT-AGACTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437637 9 - 17550833 CAT-GGACTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310407 9 - 118206036 CAT-GGACTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515202 9 - 190429646 aaC-GAACTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110683324 9 - 189454096 AAC-GAACTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251093 9 + 26754465 aaa-gaacta i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153814 9 - 5137665 aaa-gaacta i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58764 10 - 60632 ACATGAACTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969058 8 + 2427316 AA--GAACTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255698 9 + 1448899 CAT-GAACTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990871 9 - 190850796 CAT-GGACTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154616 9 - 15139346 CAT-GGACTG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6938832 9 - 7304997 CAT-GGACTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9354851 9 - 11631747 CAT-GGACTG i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1838450 9 + 4188776 CAT-GAACTA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8592024 9 + 8790067 CAT-AAACTA i otoGar3.GL873602 I 1 C 0 s mm10.chr5 76396065 9 + 151834684 CAT-GAGCTA i mm10.chr5 C 0 C 0 s canFam3.chr13 47959496 9 + 63241923 CAT-GAGATA i canFam3.chr13 I 4 C 0 s dasNov3.JH568349 4069979 9 - 5279953 CAT-GAGCTG i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1759138 92 + 3286835 I a score=4790103.000000 s hg38.chr4_KI270787v1_alt 27956 295 + 111943 CATTTATATCTTAAATAAATAAAACAAAAAGATAT-CTTTCTTGATTAGACAGTCTAGCATAACTTTGGGTACAAGATTATGTAACTAACATC-----------------------CTTATTAAATTTAATTAGGAGGTAGGGGGTTGCA-CTTACATactaaca-ttttttctttgtgccaggcaatgttcttagtgctttgcataaatatttttatttaatTAAGTGGAATAAAATCTGAGTCACATATAAACATTAGTGTACATTTAGGATGCGCAAAT------AAGATGAATTATTTTTATCAATTTAAAAATGTCAGTTAA s panTro5.chr4 119590240 295 - 194502333 CATTTATATCTTAAATAAATTAAACAAAAAGATAT-CTTTCTTAATTAGACAGTCTAGCATAACTTTGGGTACAAGATTATGTAACTAACATC-----------------------CTTATTAAATTTAATTAGGAGGTAGGGGGTTGCA-CTTATATactaaca-tttttcctttgtgccaggcaatgttcttagtgctttgcataaatatttttatttaatTAAGTGGAATAAAATCTGAGTCACATGTAAACATTAGTGTACATTTAGGATGTGCAAAT------AAGATGAATTATTTTTATCAATTTAAAAATGTCAGTTAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006504 295 - 195804263 CATTTATATCTTAAATAAATTAAACAAAAAGATAT-CTTTCTTAATTAGACAGTCTAGCATAACTTTGGGTACAAGATTATGTAACTAACATC-----------------------CTTATTAAATTTAATTAGGAGGTAGGGGGTTGCA-CTTATATactaaca-tttttcctttgtgccaggcaatgttcttagtgctttgcataaatatttttatttaatTAAGTGGAATAAAATCTGAGTCACATGTAAACATTAGTGTACATTTAGGATGTGCAAAT------AAGATGAATTATTTTTATCAATTTAAAAATGTCAGTTAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437646 295 - 17550833 CATTTATATCTTAAATAAATTAAACAAAAAGATAA-CTTTCTTAATTAGACAGTCTAGCATAACTTTGGGTACAAGATTATGTAACTAACATC-----------------------CTTATTAAATTTAATTAGGAGGTAGGGGGTTGCA-CTTATATactaaca-tttttcctttgtgccaggcaatgttcttagtgctttgcataaatatttttatttaatTAAGTGGAATAAAATCTGAGTCACATATAAACATTAGTGTACATTTAGGATGTGCAAAT------AAGATGAATTATTTTTATCAATTTAAAAATGTCAGTTAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310416 294 - 118206036 CATTTATATCTTAAATAACTTAAACAAAAAGATAT-CTTTCTTAATTAGACAGCCTAGCATAACTTTGGGTACAAGATTATGTAACTAACATC-----------------------CTTATTAAATTTAATTAGGAGGT-GGGGGTTGCA-CTTATATactaaca-ttttttctttgtgccaggcaatgttcttagtgctttgcataaatatttttatttaatTAAGTGGAATAAAATCTGAGTCACATATAAACATTATTGTACATTTAGGATGTGCAAAT------AAGATGAATTATTTTTATCAACTTAAAAATGTCAGTTAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515211 295 - 190429646 CATTTATATCTTAAATAAATTAAACAAAAAGATAT-CTTTCTTAATTAGACAGTCTAGCATAACTTTGGGTACAAGATTATGTAACTAACATC-----------------------CTTATTAAATTTAATTAGGAGGTAGGGGGTTGCA-CTAAGACACTAACA-TTTTTTCTTTATGCCAGCCAATGTTCTTAGTGTTTTGCATAAATATTTTTATTTAATTAAGTGGAACAAAATCTGAGTCACATGTAAACATTATTGTACATTTAGGATGTTTAAAT------AAGATGAATTATTTTTATCAACTTGAAAATGTCAGTTAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110683333 295 - 189454096 CATTTATATCTTAAATAAATTAAACAAAAAGATAT-CTTTCTTAATTAGACAGTCTAGCATAACTTTGGGTACAAGATTATGTAACTAACATC-----------------------CTTATTAAATTTAATTAGGAGGTAGGGGGTTGCA-CTAATACACTAACA-TTTTTTCTTTGTGCCAGCCAATGTTCTTAGTGTTTTGCATAAATATTTTTATTTAATTAAGTGGAACAAAATCTGAGTCACATGTAAACATTATTGTACATTTAGGATGTTTAAAT------AAGATGAATTATTTTTATCAACTTGAAAATGTCAGTTAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251102 295 + 26754465 catttatatcttaaataaattaaacaaaaagataT-CTTTCTTAATTAGACAGTCTAGCATAACTTTGGGTACAAGATTATGTAACTAACATC-----------------------CTTATTAAATTTAATTAGGAGGTAGGGGGTTGCA-CTAATACACTAACA-TTTTTTCTTTGTGCCAGCCAATGTTCTTAGTGTTTTGCATAAATATTTTTATTTAATTAAGTGGAACAAAATCTGAGTCACATGTAAACATTATTGTACATTTAGGATGTTTAAAT------AAGATGAATTATTTTTATCAACTTGAAAATGTCAGTTAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4153823 295 - 5137665 catttatatcttaaataaattaaacaaaaagataT-CTTTCTTAATTAGACAGTCTAGCATAACTTTGGGTACAAGATTATGTAACTAACATC-----------------------CTTATTAAATTTAATTAGGAGGTAGGGGGTTGCA-CTAATACACTAACA-TTTTTTCTTTGTGCCAGCCAATGTTCTTAGTGTTTTGCATAAATATTTTTATTTAATTAAGTGGAACAAAATCTGAGTCACATGTAAACATTATTGTACATTTAGGATGTTTAAAT------AAGATGAATTATTTTTATCAACTTGAAAATGTCAGTTAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 58774 295 - 60632 CATTTATATCTTAAATAAATTAAACAAAAAGATAT-CTTTCTTAATTAGACAGTCTAACATAACTTTAGGCACAAGATTATGTAACTAACATC-----------------------CTTATTAAATTTAATTAGGAGGTAGGGGGTTGCA-CTAATACACTAACA-TTTTTTCTTTGTGCCAGCCAATGTTCTTAGTGTTTTGCATAAACATTTTTATTTAATTAAGTGGAACAAAATCTGAGTCACATGTAAACATTATTGTACATTTAGGATGTTTAAAT------AAGATGAATTATTTTTATCAACTTGAAAATGTCAGTTAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969066 295 + 2427316 CATTTATATCTTAAATAAATTAAACAAAAAGATAT-CTTTCTTAATTAGACAGTCTAGCATAACTTTGGGTACAAGATTATGTAACTAACATC-----------------------CTTATTAAATTTAATTAGGAGGTAGGGGGTTGCA-CTAATACACTAACA-TTTTTTCTTTGTGCCAGCCAATGTTCTTAGTGTTTTGCATAAATATTTTTATTTAATTAAGTGGAACAAAATCTGAGTCACATGTAAACATTATTGTACATTTAGGATGTTTAAAT------AAGATGAATTATTTTTATCAACTTGAAAATGTCAGTTAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1255707 293 + 1448899 CATTTATATCTTAAATAAATTAAACAAAAAGATAT-CTTTCTTAATTAGACAGTCTAGCATAACTTTGGGTACAAGATTATGTAACTAACATC-----------------------CTTCTTAAATTTAATTAGGAGGTAGGGG--TTCA-CTAATATACTAACA-TTTTTTCTTTGTGCCAGCCAATGTTCTTAGTGTTTTGCATAAATATTTTTATTTAATTAAGTGGAACAAAATCTGAGTCACATATAAACATTATTATACATTTAGGATGTGCAAAT------AAGATGAATTATTTTTATCAGCTTGAAAATGTCAGTTAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52990880 291 - 190850796 CATTTGTATCTTAAATAAATTAAACAAAAAGATAT-ATTTCTTAATTAGGCAGTCTAGCATAATTTTGGGCACAAGAGTATGTAAGTAACATC-----------------------TTTATTAAATTTAACTAGGAGAT-GGGGGTTGCA-CTAATATACTTATA-ttt---ctttgtgccaagcaatgttctcagtgctttgcataaatatttttatttaatTAAGTGGAATAAAATGTGAGTCACATGTAAACTTTATTGTACATTTAGGAAGAACAAAT------AAGATGAATTATTTTTATCGATGTAAAAATGTCAGTAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154625 292 - 15139346 CATTTGTATCTTAAATAAATTAAACAAAAAGATAT-ATTTCTTAATTAGACAGTCTAGCATAATTTTGGGCACAAGAGTATGTAACTAACATC-----------------------TTTATTAAATTTAATTAGGAGATAGGGGGTTGTA-CTAATATACTAATA-TTT---CTTTGTGCCAAGAAATGTTCTCAGTGCTTTGCataaatatttttatttaattaaGTGGAATAAAATGTGAGTCACATGTAAATATTATTGTACATTTAAGATGTACAAAT------AAGATGAATTATTTTTATCAATTTAAAAATGTCAGTTAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6938841 292 - 7304997 CATTTGTATCTTAAATAAATTAAACAAAAAGATAT-ATTTCTTAATTAGACAGTCTAGCATAATTTTGGGCACAAGAGTATGTAACTAACATC-----------------------TTTATTAAATTTAATTAGGAGATAAGGGGTTGTA-CTAATATACCAATA-TTT---TTTtgtgccaagtaatgttctcagtgctttgcataaatatttttatttaatTAAGTGGAATAAAATGTAAGTCACATGTAAACATTATTGTACATTTAGGATGTAGAAAT------AAGATGAATTATTTTTATCAACTTAAAAATGTCAGTTAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9354860 290 - 11631747 CATTTGTATCTTAAATAAATTAAACAAAAAG--AT-ATTTCTTAATTAGACAGTCTAGCATAATTTTGGGCACAAGAGTATGTAACTAACATC-----------------------TTTATTAAATTTAATTAGGAGATAGGGGGTTGTA-CTAATATACTAATA-ttt---ctttgtgccaagcaatgttctcagtgctttgcataaatatttttatttaatTAAGTGGAATAAAATGTGAGTCACATGTAAACATTATTGTACATTTAGGGTGTACAAAT------AAGATGAATTATTTTTATCAACTTAAAAATGTCAGTTAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1759230 318 + 3286835 CATTTTTATCTTAAATAAATTAAACAAAAAGATATATTTTCTTAATTAGACAGTCTAGCATAACTTTGGGTACAGTAGTATGTAACTAACATCTTTGttaaatttgttaaatttaatttgttaaatttaattAAGAAATAGCGGGTTGCA-CTAATATGCTAACA-TCTtttctttgtgccaggcaatgttctcagtgttttgcataaatactttgatttaatTAAGTGGAATAAATTATGAGTCACATGTAAACATTATTATACATTTAGGATGTGCAAAT------TAGATATA-CTTTTTAATCAACTTAAAAATGTTGGTTAA i micMur3.chrUn_NW_017968520v1 I 92 C 0 s proCoq1.NW_012140747v1 1838459 296 + 4188776 CGTTTTTATCTTAAATAAATTAAACAAAAAGATATATTTTCTTAATTAGACAGTCTAGCATAACCTTGGGTACAGTAGTATGTAACTAACATC-----------------------TTTATTAAATTTAATTAGGAGGTAGGGGGTTGCa-ataatatgctaaca-tcttttctttgtgccaggcaatgttttcaacgttttgcataaataattttatttaatTAAGCGGAATAAAATGTGAGTCACATGTAAACATTATTATACATTTAGGATGTGCAAAT------TAGATGTATTTTTTTAATCAACTTAAAAATATTGGTTAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8592033 273 + 8790067 TATTTTTATCTTAAA-----TAAACAAAAAAATGTATTTTCTTAATT----AGTCTAGCATAACTTTGGGTGCAGGAGTATGTAGCTAACATC-----------------------TTTGGTAAATTTAATCAGGAGGTGGGGAGTTG---------------CT-TCTTttatttgggccaggcaatgttcccaatgttttacataaatcattttatttaatTAGATGTAATAAAATGTGAGTCATATGTAAACATTATTATATATTTAGGATGTGCAAAT------TAGATATATTATTTTTATCAATTTAAAAATGTTGGTTAA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76396074 278 + 151834684 CATTTATATTT-----AAATTAAAC----AGATAT-ATTTTC---TCAGACAGTCCAGCATAGCTTTGGATATAATGATTCCTAACTAGTGTC-----------------------TTTATTAAATTTA--TAGAAGG-AAGTGGTTACA-TTAACATGCTAACA-TATTTTCTTTGGGCCAGTTGATGTCCTCAGTGATTTGCATAAATAACATTACTTATTTAAATGGACTAGAG--TGAGTCACATGTAAACATTATCATACAGTTAGGATGTGCAAAT------CAGATATATTATGTTTATCGGTTTAAAAATGGCCATTAA i mm10.chr5 C 0 C 0 s canFam3.chr13 47959505 294 + 63241923 TATTTATACCTTAAATAAATTAAACAAAAA-ATA--CTTTCTTAAATAGACAATCTAGCATAATGTTAGGCACAATAGTATGTAACTGACATC-----------------------TTTGTTAAATTTAATTAGGAGTTGAAGGGTTGCAGCTAATATCCGgaac-acttttctttgtgctaggcaatgaccttggtgctttgcatgaataattttatgtaatTAAATGTAATAAAATGTGAATCACATGTAAACATTATTACACATTTTGGATGTGAAAAT------AAGGTATGTTATTTTTATCAACTTAAAAATGTTGGTTAA i canFam3.chr13 C 0 I 191 s dasNov3.JH568349 4069988 300 - 5279953 TATGTATATTTTAACTAGATAAAACTAAATAATATATTTTCTTAATTATACAGTATTGCATAAATTTGGGAATAATAGAAAGCAACAAACATC-----------------------TTTGTTAAATGTAAGTAGGAAATAATGGGATGCAACTAAAATACTAACagtattttcttagtgccaggcaatgtgcttggtactttgc-taaataattttatttaatTAAATAGAATAAAATGTGAGTCGTGAGTAAACATTA---TATATTTAGGAAGTGCAAATTAAAAGAAGATGAATTATCTTTATCAGCTTTAAAATGTTGGTTAA i dasNov3.JH568349 C 0 C 0 a score=8090.000000 s hg38.chr4_KI270787v1_alt 28251 1 + 111943 -T s panTro5.chr4 119590535 1 - 194502333 -T i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006799 1 - 195804263 -T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437941 1 - 17550833 -T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310710 1 - 118206036 -T i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515506 1 - 190429646 -T i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110683628 1 - 189454096 -T i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251397 1 + 26754465 -T i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154118 1 - 5137665 -T i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59069 1 - 60632 -T i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969361 1 + 2427316 -T i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256000 1 + 1448899 -T i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52991171 1 - 190850796 -T i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154917 1 - 15139346 -T i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939133 1 - 7304997 -T i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355150 1 - 11631747 -T i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1759548 1 + 3286835 -T i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1838755 1 + 4188776 -T i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8592306 1 + 8790067 -T i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76396352 1 + 151834684 -T i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4070288 1 - 5279953 A- i dasNov3.JH568349 C 0 C 0 e canFam3.chr13 47959799 191 + 63241923 I a score=2090241.000000 s hg38.chr4_KI270787v1_alt 28252 134 + 111943 CTAATTC--AGCTACCCAAGAAATCATTCCTCAGAATCCCAAATTTCTGTCTTGATGCACCTCATCATGATGAAAATATC-AAACTTAGAATGTTC--AATACAC--T-ATAACATTGCTAATCATATTCTCCAATAA-TTTA s panTro5.chr4 119590536 133 - 194502333 CTAATTC--AGCTACCCAAGAAATCATTCCTCAGAATCCCAAATTTCTGTCTTGATGCACCTCATCATGATG-AAATATC-AAACTTAGAATATTC--AATACAC--T-ATAACATTGCTAAGCATATTCTCCAATAA-TTTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006800 133 - 195804263 CTAATTC--AGCTACCCAAGAAATCATTCCTCAGAATCCCAAATTTCTGTCTTGATGCACCTCATCATGATG-AAATATC-AAACTTAGAATATTC--AATACAC--T-ATAACATTGCTAAGCATATTCTCCAATAA-TTTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4437942 133 - 17550833 CTAATTC--AGCTACCCAAGAAATCATTCCTCAGAATCCCAAATTTCTGTCTTGATGCACCTCATCATGATG-AAATATC-AAACTTAGAATATTC--AATACAC--T-ATAACATTGCTAAGCATATTCTCCAATAA-TTTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310711 134 - 118206036 CTAATTC--AGCTACCCAAGAAATCATTCCTCAGAATCCCAAATTTCTGTCTTGACCCACCTCATCATGATGAAAATATC-AAACTTAGAATATTC--AATACAC--T-TTAACATTGCTAAGCATATTCTCCAATAA-TTTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515507 134 - 190429646 CTAATTC--AGCTACCCAAGAAATCATTCCTCAGAATCCCAAATTTCTGTCTTGACCCACCTCATCATGATGAAAATATC-AAACTTAGAATATTC--AATACAC--T-ATAACATTGCTAAGCATATTCTCTGATAA-TTTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110683629 134 - 189454096 CTAATTC--AGCTACCCAAGAAATCATTCCTCAGAATCCCAAATTTCTGTCTTGACCCACCTCATCATGATGAAAATATC-AAACTTAGAATATTC--AATACAC--T-ATAACATTGCTAAGCATATTCTCTGATAA-TTTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251398 134 + 26754465 CTAATTC--AGCTACCCAAGAAATCATTCCTCAGAATCCCAAATATCTGTCTTGACCCACCTCATCATGATGAAAATATC-AAACTTAGAATATTC--AATACAC--T-ATAACATTGCTAAGCATATTCTCTGATAA-TTTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154119 134 - 5137665 CTAATTC--AGCTACCCAAGAAATCATTCCTCAGAATCCCAAATTTCTGTCTTGACCCACCTCATCATGATGAAAATATC-AAACTTAGAATATTC--AATACAC--T-ATAACATTGCTAAGCATATTCTCTGACAA-TTTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59070 134 - 60632 CTAATTC--AGCTACCCAAGAAATCATTCCTCAGAATCCCAAATTTCTGTCTTGACCCACCTCATCATGATGAAAATATC-AAACTTAGAATATTC--AATACAC--T-GTAACATTGCTAAGCATATTCTCTGATAA-TGTA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969362 134 + 2427316 CTAATTC--AGCTACCCAAGAAATCATTCCTCAGAATCCCAAATTTCTGTCTTGACCCACCTCATCATGATGAAAATATC-AAACTTAGAATATTC--AATACAC--T-ATAACATTGCTAAGCATATTCTCTGATAA-TTTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256001 134 + 1448899 CTAATTC--AGCTACCCAAGAAATCATTCCTCAGAATCCCAAATTTCTGTCTTGACCCACCTCATCGTGATGAAAATATC-AAACTTAGAATATTC--AATACAC--T-ATAACATTGCTAAGCATATTCTCCGATGA-TTTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52991172 134 - 190850796 CTAATTC--AGCTACCCAAGAAACCATTTCTCAGAATCCAGAATTTCTGTCTGGACCAACCTCATCATGATGAAAATATC-AAACTTAAAATATTC--AATACAC--T-ATAACATTGCTAAGCATATTTTCCAACAA-TTTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8154918 134 - 15139346 CTAATTC--AGCTACCCAAGAAACCATTTCTCAGAATCCCAAATTTCTGTCTGGACCCACCTCATCATGATGAAAATATC-AAACTTAAAATATTC--AATACAC--T-ATAACATTGCTAAGCATATTTTCTAACAA-TTTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939134 135 - 7304997 CGAATTC--AGCTACCCAAGAAACCATTTCTCAGGATCTCAAATTTCTGTGTGGACCCACCTCATCATGATGAAAATATCAAAACTTAAAATATTC--AATACAC--T-ATAACATTGCTAAGCATATTTTCCAACAA-TTTG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355151 134 - 11631747 CTAATTC--AGCTACCCAAGAAACCATTTCTCAGAATCCCAAATTTCTGTCTGGACCCACCTCATCATGATGAAAATATC-AAACTTAAAATATTC--AATACAC--T-ATTACATTGCTAAGCATATTTTCCAACAA-TTTA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1759549 135 + 3286835 CTAATTT--AGCTACTCAAGAGATCATTCCTCAGAACCCCAAATTTCTGTTATGACTCA-CTCATCACAATGAAATTTTC-AAAGTTAGAATATTC--AACACAATTT-ATAACATTGCTAAGGATATTCTTTAATAA-TTTA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1838756 136 + 4188776 CTAATTT--AGCTACTCAAGAGATCATTCCTCAGAACCCCAAATTTCTGTCATGACTTACCCCACCACGATGAAATTTTC-AAACTTAGAATATTC--AACACACTTT-ATAACATTGCTAAGGATATTCTCTGATAA-TTTA i proCoq1.NW_012140747v1 C 0 M 755 s otoGar3.GL873602 8592307 115 + 8790067 CTAATTT---GCTACTCAAGAGATCATTCCTCAGAATCCCAAATTTCTGTCTTGACTC--------------------TC-AAACTTAGAGTATTC--AACACACTTT-ATAACATTGCTAAGCATACGCTCCAACAA-TTTA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76396353 124 + 151834684 CTGATTT--TGCTATCCACATGTTCATTCCTTGGAATTCCAAATTTGTGTTTTGATCCATCCAA--------------TC-ACACTTAGAATACTTAGAATGGAC--TGACCACACTGCTCAGGACATTCGCCAGTAAGTTTA i mm10.chr5 C 0 C 0 s canFam3.chr13 47959990 133 + 63241923 ATGATTT--AGCTACACAAGTG--CATTCCTCAGAGTCCC-AACTGCTGTCTTGACCCATTCCATCACCACAAAAATCTC-AAACTGAAAACAGTG--AATACATTTT-ATAACATTGCTAAGCATATTCTCCAATAA-CTTA i canFam3.chr13 I 191 C 0 s dasNov3.JH568349 4070289 124 - 5279953 CTAATTTTTAGCTAC------------TCCAAAGAATCCCAAATTCCTGTCTTGATCCTCTCCACCGTGAAGACAGCATC-AAACTCAGAATAATC--AATACTT--T-ATAATGTTGCTATACATATTCTCCAATAA-TTTA i dasNov3.JH568349 C 0 C 0 a score=587168.000000 s hg38.chr4_KI270787v1_alt 28386 51 + 111943 TAGTGAT-------AATCATGTTCTTAAAAT--ATGATTACAAAAACTATTTGAATTGTC s panTro5.chr4 119590669 51 - 194502333 TAGTGAT-------AATCATGTTCTTAAAAT--ATGATTACAAAAACTATTTGAATTGTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006933 51 - 195804263 TAGTGAT-------AATCATGTCCTTAAAAT--ATGATTACAAAAACTATTTGAATTGTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438075 51 - 17550833 TAGTGAT-------AATCATGTTCTTAAAAT--ATGATTACAAAAACTATTTGAATTGTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310845 51 - 118206036 TAGTGAT-------AATCATGTTCTTAAAAT--ATGATTACAAAAACTATTTGAATTATC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515641 48 - 190429646 TA---AT-------AATCATGTTCTTAAGAT--ATGATTGCAAAAACTATTTGAATTGTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110683763 48 - 189454096 TA---AT-------AATCATGTTCTTAAGAT--ATGATTGCAAAAACTATTTGAATTGTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251532 48 + 26754465 TA---AT-------AATCATGTTCTTAAGAT--ATGATTGCAAAAACTATTTGAATTGTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154253 48 - 5137665 TA---AT-------AATCATGTTCTTAAGAT--ATGATTGTAAAAACTATTTGAATTGTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59204 48 - 60632 TA---AT-------AATCATGTTCTTAAGAT--ATGATTGCAAAAACTATTTCAATTGTC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969496 48 + 2427316 TA---AT-------AATCAAGTTCTTAAGAT--ATGATTGCAAAAACTACTTGAATTGTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256135 48 + 1448899 TA---AT-------AATCATGTTCTTAAGAT--ATGATTGCAAAAACTATTTGAATTGTC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52991306 51 - 190850796 TAGTGAT-------AATTGTGTTTTTAAAAC--ATGATTACAAAAACTATTGAAACTGTC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155052 51 - 15139346 TAGTGAT-------AATCATGTTTTTAAAAT--ATTATTACAAAAACTATTGAAATTGTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939269 51 - 7304997 TAGTGAC-------AATCATGTTTTTAAAAT--ATGATTACAAAAACTATTGAAATTGTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355285 51 - 11631747 TAGTGAT-------AATCATGTTTTTAAAAT--ATGATTATAAAAACTATTGAAATTGTC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1759684 51 + 3286835 TAGTGAT-------AATCATATTTTTAAAAT--ATGATTATAAAAATTATTAGAATTATT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8592422 48 + 8790067 ---TGAT-------AATCATGTTTCTAAAAT--ATGATTGTAAAAATTACTACAATTGTC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76396477 54 + 151834684 TGGTGATATGATGAAACCATTTT----AAAT--ACACCTACACAAATCACTCTGCCTGTT i mm10.chr5 C 0 C 0 s canFam3.chr13 47960123 47 + 63241923 ---TAGT-------ATATTTATTTTTAAAAT--ATGCCTAAAAAAATT-TTGTAATTGTT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4070413 51 - 5279953 TAGCTAT-------AATCATCTGTTTTGTTTTAATGCTTG--AAAATTATTATAATTGTT i dasNov3.JH568349 C 0 I 488 e proCoq1.NW_012140747v1 1838892 755 + 4188776 M a score=2638975.000000 s hg38.chr4_KI270787v1_alt 28437 185 + 111943 CTAAAACGATTTTCATTTTATGCATTTGAATTA-------A-------------------------------------------------------AGTCAATAA---GTTCCTCTAAAATAATTACT-TTATCTCACTTTCCTTGGTATATTC-----------TCTTAGTACTCAAGAGTAT-CTTTGTTTATATTAGATTCACATGACTGTCCAAATATG-TAACTGTGGATGCCAGAAATATTTTTCAGATTAGGGCAAA s panTro5.chr4 119590720 192 - 194502333 CTAAAACGATTTTCATTTTATGTATTTGAATTATGCCATTA-------------------------------------------------------AGTCAATAA---GTTCCTCTAAAACAATTACT-TTATCTCACTTTCCTTGGTATATTC-----------TCTTAGTACTCAAGAGTAT-CTTTGTTTATATTAGATTCACATGACTGTTCAAATATG-TAACTGTGGATGCCAGAAATATTTTTCAGATTAGGGCAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121006984 192 - 195804263 CTAAAACGATTTTCATTTTATGTATTTGAATTATGCCATTA-------------------------------------------------------AGTCAATAA---GTTCCTCTAAAACAATTACT-TTATCTCACTTTCCTTGGTATATTC-----------TCTTAGTACTCAAGAGTAT-CTTTGTTTATATTAGATTCACATGACTGTTCAAATATG-TAACTGTGGATGCCAGAAATATTTTTCAGATTAGGGCAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438126 192 - 17550833 CTAAAACGATTTTCATTTTATGCATTTGAATTATGCCATTA-------------------------------------------------------AGTCAATAA---GTTCCTCTAAAACAATTACT-TTATCTCACTTTCCTTGGTATATTC-----------TCTTAGTACTCAAGAGTAT-CTTTGTTTATATTAGATTCACATGACTGTCCAAATATG-TAACTGTGGATGCCAGAAATATTTTTCAGATTAGGGCAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69310896 192 - 118206036 CTAAAACTATTTTCATTTTATACATTTGAATTATGCCATTA-------------------------------------------------------AGTCAGTAA---GTTCCTTTAAAACAATTACT-TTATCTCACTTTCCTTGGTATCTTC-----------TCTTAGTACTCAAGAGTAT-CTTTGTTTATATTAGATTCACATGACTGTCCAAATACG-TAACTGTGGATGCCAGAAATATTTTTCAGATTAGGACAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515689 192 - 190429646 CTAAAACTGTTTTCATTTTATGCATTCGAATTATGCCATTA-------------------------------------------------------AGTCAATAA---ATTCCTCTAAAACAATTACT-TTATCTCACTTTCCTTGGTATCTTC-----------TCTTAGTACTCAAGAGTAG-CTTCGTTTATATTAGATTTACGTGACTGTCCAAATACG-TAACTGTGGATACCAGAAATATTTTTCAGATTAGGGCAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110683811 192 - 189454096 CTAAAACTATTTTCATTTTATGCATTCGAATTATGCCATTA-------------------------------------------------------AGTCAATAA---ATTCCTCTAAAACAATTACT-TTATCTCACTTTCCTTGGTATCTTC-----------TCTTAGTACTCAAGAGTAG-CTTCGTTTATATTAGATTTACGTGACTGTCCAAATACG-TAACTGTGGATACCAGAAATATTTTTCAGATTAGGGCAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251580 192 + 26754465 CTAAAACTATTTTCATTTTATGCATTCGAATTATGCCATTA-------------------------------------------------------AGTCAATAA---ATTCCTCTAAAACAATTACT-TTATCTCACTTTCCTTGGTATCTTC-----------TCTTAGTACTCAAGAGTAG-CTTCGTTTATATTAGATATACGTGACTGTCCAAATACG-TAACTGTGGATACCAGAAATATTTTTCAGATTAGGGCAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154301 192 - 5137665 CTAGAACTATTTTCATTTTATGCATTCGAATTATGCCATTA-------------------------------------------------------AGTCAATAA---ATTCCTCTAAAACAATTACT-TTATCTCACTTTCCTTGGTATCTTC-----------TCTTAGTACTCAAGAGTAG-CTTCGTTTATATTAGATTTACGTGACTGTCCAAATACG-TAACTGTGGATACCAGAAATATTTTTCAGATTAGGGCAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59252 192 - 60632 CTAAAACTATTTTCATTTTATGCATTTGAATTATGCCATTA-------------------------------------------------------AGTCGGTAA---GTTCCTCTAAAACAATTACT-TTATCTCACTTTCCTTGGTATCTTC-----------TCTTAGTACTCAAGAGTAG-CTTCGTTTATATTAGATTTACGTGACTGTCCAAATACG-TAACTGTGGATACCAGAAATATTTTTCAGATTAGGGCAAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969544 192 + 2427316 CTAAAACTATTTTCATTTTATGCATTCGAATTATGCCATTA-------------------------------------------------------AGTCAATAA---GTTCCTCTAAAACAATTACT-TTATCTCACTTTCCTTGGTATCTTC-----------TCTTAGTACTCAAGAGTAG-CTTCGTTTATATTAGATTTACGTGACTGTCCAAATATG-TAACTGTGGATACCAGAAATATTTTTCAGATTAGGGCAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256183 191 + 1448899 CTAAAACTATTTTCATTTTATGCATTCGAATTATGCCATTA-------------------------------------------------------AGTCAATAA----TTCCTCTAAAACAATTACT-TTATCTCACTTTCCTTGGTATCTTC-----------TCTTAGTACTCAAGAGTAT-CTTCGTTTATATTAGATTCACGTGACTGTCCAAATACG-TAACTGTGGATACCAGAAATATTTTTCAGATTAGGGCAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52991357 191 - 190850796 CTAAAACTATTTTCATTTTATGCATTTGAATTATGCCATTA-------------------------------------------------------AGTCAATAA---GTTCCTCCAAAACAATTACT-TTCTCTCGCTTTCCTTGTTATCTTC-----------CCTTAGTACTCAG-AGTAT-CTTTATTTATATTTGATTCACATGACTGTCCAAATATG-TAATTGTGAATGCCAGAAATGTTTTTCAGATTAGGGTAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155103 192 - 15139346 CTAAAACTATTTTCATTTTATGCATTTGAATTATGCCATTA-------------------------------------------------------AGTCAATAA---GTTCCTCCAAAACAATTACT-TTATCTCGCTTTCCTTGGTATCTTC-----------CCTTAGTATTCAACAGTAT-CTTTGTTTATATTAGATTCACATGACTGTCCAGATACG-TAACTGTGAATGCCAGAAATGTTTTTCAGATTAGGGCAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939320 192 - 7304997 CTAAAGCTATTTTCATTTTATGCATTTGAATTATGCCATTA-------------------------------------------------------AGTCAATAA---GTTCCTCCAAAACAATTACT-TTATCTCGCTTTCCTTGGTATCTTC-----------CCTTAGTACTCAAGAGTAT-CTTTGTTTATATTAGATTCACATGACTGTCCAAATATG-TAATTGTGAATGCCATAAATGTTTTCCAGATTAGGGCAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355336 192 - 11631747 CTAAAACTGTTTTCATTTTATGCATTTGAATTATGCCATTA-------------------------------------------------------AGTCAATAA---ATTCCTCCAAAACAATTACT-TTATCTCGCTTTCCTTGGTATCTTC-----------CCTTAGTACTCAATAGTAT-CTTTGTTTATATTAGATTCACATGACTGTCCAAATATG-TAATTGTGAATGCCAAAAATGTTTTTCAGATTAGGGCAAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1759735 196 + 3286835 CTAAAAATCTTTTCATTTCAAGCATTTGAATTGTGCCATGA-------------------------------------------------------AATTAATAATAGTTCCCTCCAAAATAATTACT-TTATCCCATTGTCTTTGGTGTCTTC-----------CCTTAATACCCAAGAGTATGCTTTATTTATATGAAAGATGCATGACTGTCAAAATATG-TAACTGTGGATAACAGAAATATTTTTCAGATCAGGGTAAA i micMur3.chrUn_NW_017968520v1 C 0 I 346 s otoGar3.GL873602 8592470 195 + 8790067 CCCCAAATATTTTCATTTCAAGTATTGGAATTATA-CAGGA-------------------------------------------------------AGTAAATAATAATTTCCTCCAAAATAATTATT-TCATTCCACTCTGCTTGGTATCTTC-----------TCTCAGTACCCAAGAATATGCTTTATGTCTATGACATTTGCACAACTGTCAACGTATG-TAACTGTGGATGACAGAAGTGTTTTTCAGATCAGGGCAAA i otoGar3.GL873602 C 0 I 14 s mm10.chr5 76396531 162 + 151834684 TTGAAGGGATTTTCAT-------------------CCACAA-------------------------------------------------------ACGAAATGA---GTTCCCCCAAGAGGATCGTT-TGCCC-------CCTTGGTATCTTC--------------TAGCAC-CAAGAGTATGCCTTGCTTATGGTAGAGTCACAGGGCTGTCACAATATG-CAACTGTGGGTACTGGGAATATTTTT-AAATCAGGAAATA i mm10.chr5 C 0 C 0 s canFam3.chr13 47960170 249 + 63241923 CTAAAAATGCTTTCATTTTATGCATTTAAATTATGCCATAAGCgcccggctagctcagtcggtagagcatgagactcttaaATTATGCCATGGAGTAAACAATAA---TTTACTCCAAAATAATTATTATTTTATCTCTTTCTGTGGTGCCTTC-----------CCTTAGTACCTCAGAGTTTGGTTTATTCATATTAGATTCATATGACTGTCAAAATATT-TAACTGTGGATGCCAGAAATATTTTTCAGATCAGGGCAAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4070952 177 - 5279953 CTATAAACATTTTCATTTTATGCATTTGAATTATGCCATGA-------------------------------------------------------AGTAAATAGTAAGTTTCTCCAAGACAATTATT-TTGTCT--------TCTGTGTCTTGAGTAAGGGAAGTCTTAATACCCAAGAGTGTGCTTT----------------------TGTCAAAATATGTTAAGTGTG-ATGCCAAACATATTTTTTAGATCATGGCAAA i dasNov3.JH568349 I 488 C 0 e proCoq1.NW_012140747v1 1838892 755 + 4188776 M a score=66959.000000 s hg38.chr4_KI270787v1_alt 28622 6 + 111943 TAGTT-A s panTro5.chr4 119590912 6 - 194502333 TAGTT-A i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007176 6 - 195804263 TAGTT-A i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438318 6 - 17550833 TAGTT-A i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311088 6 - 118206036 TAGTT-A i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515881 6 - 190429646 TAGTT-A i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684003 6 - 189454096 TAGTT-A i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251772 6 + 26754465 TAGTT-A i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154493 6 - 5137665 TAGTT-A i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59444 6 - 60632 TAGTT-A i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969736 6 + 2427316 TAGTT-A i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256374 6 + 1448899 TAGTT-A i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52991548 6 - 190850796 TTGTT-A i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155295 7 - 15139346 TAGTGAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939512 7 - 7304997 TAGTTAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355528 7 - 11631747 TAGTTAA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8592679 6 + 8790067 AAATT-A i otoGar3.GL873602 I 14 I 135 s mm10.chr5 76396693 6 + 151834684 TAGTT-A i mm10.chr5 C 0 I 3 s canFam3.chr13 47960419 6 + 63241923 TAGTT-A i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4071129 6 - 5279953 TAGCT-A i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1838892 755 + 4188776 M e micMur3.chrUn_NW_017968520v1 1759931 346 + 3286835 I a score=91335.000000 s hg38.chr4_KI270787v1_alt 28628 6 + 111943 CTGGAA s panTro5.chr4 119590918 6 - 194502333 CTGGAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007182 6 - 195804263 CTGGAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438324 6 - 17550833 CTGGAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311094 6 - 118206036 CTGGAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515887 6 - 190429646 CTGGAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684009 6 - 189454096 CTGGAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251778 6 + 26754465 CTGGAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154499 6 - 5137665 CTGGGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59450 6 - 60632 CTGGAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969742 6 + 2427316 CTGGGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256380 6 + 1448899 CTGGAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52991554 6 - 190850796 CTGGGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155302 6 - 15139346 CTGGGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939519 6 - 7304997 CTGGGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355535 6 - 11631747 CTGGGA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8592820 6 + 8790067 ctggga i otoGar3.GL873602 I 135 I 156 s mm10.chr5 76396702 6 + 151834684 TTGGAA i mm10.chr5 I 3 C 0 s canFam3.chr13 47960425 6 + 63241923 GTGGAA i canFam3.chr13 C 0 I 3 s dasNov3.JH568349 4071135 6 - 5279953 CTGGAA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1838892 755 + 4188776 M e micMur3.chrUn_NW_017968520v1 1759931 346 + 3286835 I a score=93671.000000 s hg38.chr4_KI270787v1_alt 28634 9 + 111943 AAAAATTAC s panTro5.chr4 119590924 9 - 194502333 AAAAATTAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007188 9 - 195804263 AAAAATTAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438330 9 - 17550833 AAAAATTAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311100 9 - 118206036 AAAAATTAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515893 9 - 190429646 AAAAATTAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684015 9 - 189454096 AAAAATTAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251784 9 + 26754465 AAAAATTAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154505 9 - 5137665 AAACATTAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59456 9 - 60632 AAAAATTAT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969748 9 + 2427316 AAAAATTAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256386 9 + 1448899 AAAAATTAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52991560 9 - 190850796 AAAAATTAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155308 9 - 15139346 AAAAATTAC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939525 9 - 7304997 AAAAATTAC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355541 9 - 11631747 AAAAATTAC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8592982 7 + 8790067 --AAATTTT i otoGar3.GL873602 I 156 I 2 s mm10.chr5 76396708 6 + 151834684 ---GATTTT i mm10.chr5 C 0 I 8 s canFam3.chr13 47960434 4 + 63241923 -----TTTT i canFam3.chr13 I 3 I 5 s dasNov3.JH568349 4071141 8 - 5279953 -AATTTTAC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1838892 755 + 4188776 M e micMur3.chrUn_NW_017968520v1 1759931 346 + 3286835 I a score=615883.000000 s hg38.chr4_KI270787v1_alt 28643 41 + 111943 TAT-TTT-------TCTACTAAAATAGTCACTGGA-A--ATTTTTTTCTAAA s panTro5.chr4 119590933 41 - 194502333 TAT-TTT-------TCTACTAAAATAGTCACTGGA-A--ATTTTTTTCTAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007197 41 - 195804263 TAT-TTT-------TCTACTAAAATAGTCACTGGA-A--ATTTTTTTCTAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438339 41 - 17550833 TAT-TTT-------TCTACTAAAATAGTCACTGGA-A--ATTTTTTTCTAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311109 41 - 118206036 GAT-TTT-------TCTACTAAAATAGTCACTGGA-A--ATTTTTTTCTAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515902 41 - 190429646 TAT-TTT-------TCTACTAAAATAGTCACTGGA-A--ATTTTTTTCTAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684024 41 - 189454096 TAC-TTT-------TCTACTAAAATAGTCACTGGA-A--ATTTTTTTCTAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251793 41 + 26754465 TAT-TTT-------TCTACTAAAATAGTCACTGGA-A--ATTTTTTTCTAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154514 41 - 5137665 TAT-TTT-------TCTACTAAAATAGTCACTGGA-A--ATTTTTTTCTAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59465 41 - 60632 TAT-TTT-------TCTACTAAAATAGTCACTGGA-A--ATTTTTTTCTAAA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969757 41 + 2427316 TAT-TTT-------TCTACTAAAATAGTCACTGGA-A--ATTTTTTTCTAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256395 41 + 1448899 TAT-TTT-------TCTACTAAAATAGTCACTGGA-A--ACTTTTTTCTAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52991569 43 - 190850796 TAC-TTT-------TCTACTAAAATAGTCACTGGA-ATTTTTTTTTTCTAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155317 42 - 15139346 TAC-TTT-------TCTACTCAAATGGTCACTGGA-A-TTTTTTTTCCTAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939534 42 - 7304997 TAC-TTT-------TCTACTAAAATAGTCACTGGA-A-TTTTTTTTCCTAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355550 42 - 11631747 TAC-TTT-------TCTACTAAAATAGTCACTGGA-A-TTTTTTTTCCTAAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1760277 41 + 3286835 TAT-TTT-------TCTACTAAAATACTTACTGGA-A--ATTTTTTTCTAAa i micMur3.chrUn_NW_017968520v1 I 346 C 0 s otoGar3.GL873602 8592991 40 + 8790067 TAT-TTT-------TCTACTAAAATAGTTATTGG--A--ACTTTTTTCTAAA i otoGar3.GL873602 I 2 C 0 s mm10.chr5 76396722 49 + 151834684 TAT-TTTGTTTGCCTTTACTAAAGTAGTTGCTGAACA--ATTTTCTTCTAAA i mm10.chr5 I 8 C 0 s canFam3.chr13 47960443 41 + 63241923 TAT-TTT-------TCTACAAAAATAGTTACTGGA-A--AATATTTGCTAAA i canFam3.chr13 I 5 C 0 s dasNov3.JH568349 4071149 40 - 5279953 TATCTTT-------TCTACTAAAATA--TACTGGA-A--AATGTTTTCTAAA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1838892 755 + 4188776 M a score=148003.000000 s hg38.chr4_KI270787v1_alt 28684 8 + 111943 AATACCCA s panTro5.chr4 119590974 8 - 194502333 AATACCCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007238 8 - 195804263 AATACCCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438380 8 - 17550833 AATACCCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311150 8 - 118206036 AATACCCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515943 8 - 190429646 AATACCCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684065 8 - 189454096 AATACTCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251834 8 + 26754465 AATACCCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154555 8 - 5137665 AATACCCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59506 8 - 60632 AATACCCA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969798 8 + 2427316 AATACCCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256436 8 + 1448899 AATACCCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52991612 8 - 190850796 AATACTCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155359 8 - 15139346 AATACTCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939576 8 - 7304997 AATACTCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355592 8 - 11631747 AATACTCA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1760318 8 + 3286835 aatattca i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1839647 8 + 4188776 AATACTCA i proCoq1.NW_012140747v1 M 755 C 0 s otoGar3.GL873602 8593031 8 + 8790067 AATATTCA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76396771 8 + 151834684 GATACTCA i mm10.chr5 C 0 I 347 s canFam3.chr13 47960484 8 + 63241923 AATATTCA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4071189 8 - 5279953 AATACTCA i dasNov3.JH568349 C 0 C 0 a score=1213253.000000 s hg38.chr4_KI270787v1_alt 28692 71 + 111943 ATATGAAATGTGGTA-------------GAATTATTTAATGTGGGAAC-CACAGCTT-TAACTCAAATATTGTTGGCATCAGTGAG s panTro5.chr4 119590982 71 - 194502333 ATATGAAATGTGGTA-------------GAATTATTTAATGTGGGAAC-CACAGCTT-TAACTCAAATATTGTTGGCATCAGTGAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007246 71 - 195804263 ATATGAAATGTGGTA-------------GAATTATTTAATGTGGGAAC-CACAGCTT-TAACTCAAATATTGTTGGCATCAGTGAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438388 71 - 17550833 ATATGAAATGTGGCA-------------GAATTATTTAACGTGGGAAC-CACAGCTT-TAACTCAAATATTGTTGGCATCAGTGAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311158 71 - 118206036 ATATGAAATGTGGTA-------------GAATTATTCAATGTTGGAAC-CACGGCTT-TAACTCAAATATTGTTGGCATCAGTGAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111515951 72 - 190429646 ATATAAAATGTGGTA-------------GAATTATTTAATGTTGGAAC-CACAGTTTATAACTCAAATATCGTTGGCATTAGTGAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684073 72 - 189454096 ATATAAAATGTGGTA-------------GAATTATTTAATGTTGGAAC-CACAGTTTATAACTCAAATATCGTTGGCATTAGTGAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251842 72 + 26754465 ATATAAAATGTGGTA-------------GAATTATTTAATGTTGGAAC-CACAGTTTATAACTCAAATATCGTTGGCATTAGTGAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154563 72 - 5137665 ATATAAAATGTGGTA-------------GAATTATTTAATGTTGGAAC-CACAGTTAATAACTCAAATATCGTTGGCATTAGTGAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59514 72 - 60632 ATATAAAATGTGGTA-------------GAATTATTTAATGTTGGAAC-CACAGCTTATAACTCAAATATCGTTGGCATCAGTGAG i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969806 72 + 2427316 ATATAAAATGTGGTA-------------GAATTATTTAATGTTGGAAC-CACAGTTTATAACTCAAATATCGTTGGCATTAGTGAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256444 72 + 1448899 ATATAAAATGTGGTA-------------GAATTATTTAATGTTGGAAC-CACAGCTTATAACTCAAATATCGTTGGCATCAGTGAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52991620 71 - 190850796 ATATGAAATGTGGTA-------------GAATTATTTAATGTTGGAAC-CACAGCTT-TAACTCAAATATTGTTGGTATCAGTGAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155367 71 - 15139346 ATATGAAATGTGGTA-------------GAATGATTTAATGTTGGAAC-CACAGCTT-TAACTCAAATATTGTTGCCATCAGTGAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939584 71 - 7304997 ATATGAAATGTGGTA-------------GAATGATTTAATGTTGTAAC-CACAGCTT-TAACTCAAATATTGTTGCCATCAGTGAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355600 71 - 11631747 ATATGAAATGTGGTA-------------GAATTATTTAATGTTGGAAC-CACAGCTT-TAACTCAAATATTGTTGCCATCAGTGAG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1760326 84 + 3286835 atgtgaaatgtgttctaatattaaatattaattattaaatattGGAAC-CACAGCTT-TAACTCAAATACTGTTGGCATCAGTGAG i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1839655 71 + 4188776 ATGTGAAATGTGGTA-------------GAATTATTTAATATTGGAAC-TACAGCTT-TAACTCAAATACTGTTGGCATCAGTGAG i proCoq1.NW_012140747v1 C 0 I 169 s otoGar3.GL873602 8593039 70 + 8790067 ATGTGAAATATGGTA-------------GAATTATTTAATATTTGAAC-CACAGTTT-TAACAT-AATACTGTTGGTGTCAGTGAA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76397126 72 + 151834684 ATGTGAAATGTGGTG-------------GAATTATTTAATATTGAGACTCACAGCTT-TAACTCAAATACTGTTTGTGTCAGTAAG i mm10.chr5 I 347 C 0 s canFam3.chr13 47960492 71 + 63241923 TTGTGAAATGTGGTA-------------GAATGATTTAATGTTGGAAC-AAAAGCTT-TAGCTCAAATATTATTGGCATCAGTAAG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4071197 71 - 5279953 GTGCAAAATATGGTA-------------GAATTATTTAATATTGGAAC-CACAGCTT-TAACTCAAATACTGTTGGCATTACAGAG i dasNov3.JH568349 C 0 C 0 a score=1030561.000000 s hg38.chr4_KI270787v1_alt 28763 89 + 111943 AGTCTGTGTTGCTACAT----AAAGG------AAAAA---ATAGCCCTTATTATAGATGAAATATTAAAAAGATTTCAGAAATATATAAATTTAAAAGAGGT s panTro5.chr4 119591053 90 - 194502333 AGCCTGTGTTGCTACAT----AAAGG-----AAAAAA---ATAGCCCTTATTATAAATGAAATATTAAAAAGATTTCAGAAATATATAAATTTAAAAGAGGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007317 90 - 195804263 AGCCTGTGTTGCTACAT----AAAGG-----AAAAAA---ATAGCCCTTATTATAAATGAAATATTAAAAAGATTTCAGAAATATATAAATTTAAAAGAGGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438459 90 - 17550833 AGCCTGTGTTGCTACAT----AAAGG-----AAAAAA---ATAGCCCTTATTATAAATGAAATATTAAAAAGATTTCAGAAATATATAAATTTAAAAGAGGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311229 91 - 118206036 AGCCTGTGTCAATACAT----AAAGGA----AAAAAA---ATAGCCCTTATTATAAATGAAATATTAAAAAGATTTCAGAAAGATATAAATTTAAAAGCGGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516023 92 - 190429646 AGCCTGTGTCACTACAT----AAAGG-----AAAAAA-ACATAGCCCTTATTATAAATGAAATATTAAAAATATTTCAGAAAGATATAAATTTAAAAGAGGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684145 92 - 189454096 AGCCTGTGTCACTACAT----AAAGG-----AAAAAA-ACATAGCCCTTATTATAAATGAAATATTAAAAATATTTCAGAAAGATATAAATTTAAAAGAGGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13251914 92 + 26754465 AGCCTGTGTCACTACAT----AAAGG-----AAAAAA-ACATAGCCCTTATTATAAATGAAATATTAAAAATATTTCAGAAAGATATAAATTTAAAAGAGGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154635 91 - 5137665 AGCCTGTGTCACCACAT----AAA-G-----AAAAAA-ACATAGCCCTTATTATAAATGAAATATTAAAAATATTTCAGAAAGATATAAATTTAAAAGAGGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59586 92 - 60632 AGCCTGTGTCACTACAT----AAAGG-----AAAAAA-ACATAGCCCTTATTATAAATGAAATATTAAAAATATTTCAGAAAGATATAAATTTAAAAGAGGT i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1969878 92 + 2427316 AGCCTGTGTCACTACAT----AAAGG-----AAAAAA-ACATAGCCCTTATTATAAATGAAATATTAAAAATATTTCAGAAAGATATAAATTTAAAAGAGGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256516 91 + 1448899 AGCCTGTGTCACTACAT----AAA-G-----GAAAAA-ACATAGCCCTTATTATAAATGAAATATTAAAAATATTTCAGAAAGATATAAATTTAAAAGAGGT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52991691 90 - 190850796 TGCCTGTGTCACTACAT----AAAAA-----AAAAAC---ATAGCCCTTGTTATAAATGCAATATTAAAAAGATTTTGGAAAGATATAAATTTAAAAGAGGT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155438 94 - 15139346 TGCCTGAGTCACTACATAAAGAAAAA-----AAAAAC---ATAGTTCTTATTATAAATACAATATTAAAGAGATTTTAGAAAGATATAAATTTAAAAGAGGT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939655 90 - 7304997 TGCCTGTGTCACTACAT----AAAGG-----GAAAAA---AAAGCCCTTATTATAAATACAATATTAAAAAGATTTTAGAAAGATATAAATTTAAAAGAGGT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355671 93 - 11631747 TGCCTGTGTCACTACATAAA-GGAAA-----AAAAAT---ATAGCCCTTATTATAAATAAAATATTAAAAAGATTTTAGAAAGATATAAATTTAAAAGAGGT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1760410 92 + 3286835 TACCTGAGTCACTATGT----GGAAT-----AAAAAG-GTATAGTCCTTATTATTATTGAAATAGTAAAAAGATTTCAGAAAGATATAAATttaaatgaggt i micMur3.chrUn_NW_017968520v1 C 0 I 57 s otoGar3.GL873602 8593109 91 + 8790067 TACATGAGTCA-TAAGT----GGAAT-----AAAAAG-TAATAATTCTTATCATTATCAAAATATTAAAAAGATTTCAGAAAGATAAACACTTAAATGAGTT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76397198 81 + 151834684 GGCATGAGCC----CAG----TGGGGCATTTAAAGAG-GCACAGCCTTCATTATCAT---ACTATGAAAAA-------GAAGGGTACATATTTCAGTGGG-- i mm10.chr5 C 0 C 0 s canFam3.chr13 47960563 93 + 63241923 TGCATGAGTCATTAAGT----GGAAT-----AAGAAAGGTATAGCACATATCAGTATTGAATTTTTCAAAATATTTCAGAAAGTTACAAAGTTAAATAAAGT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4071268 75 - 5279953 TACATGAGTCACTAGGC----AGAAT-----AAAAAG-GCACAGTTCTTACTGTTATTGAAATATTAAAAAG-TTTCAGAAATGTC---------------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1839726 169 + 4188776 I a score=595096.000000 s hg38.chr4_KI270787v1_alt 28852 79 + 111943 CACT-----------------tatatttagtgatatatttagtgatataACTTGAAA--------------TGTAAATGTGGATTTGTTGGA--------TTGAATGTTATCTTTCAG s panTro5.chr4 119591143 79 - 194502333 CACT-----------------tatatttagtgatatatttagtgatataACTTGAAA--------------TGTAAATGTGTATTTGTTGGA--------TTGAATGTTATTCTTCAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007407 79 - 195804263 CACT-----------------tatatttagtgatatatttagtgatataACTTGAAA--------------TGTAAATGTGTATTTGTTGGA--------TTGAATGTTATTCTTCAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438549 79 - 17550833 CACT-----------------tatatttagtgatatatttagtgatataACTTGAAA--------------TGTAAATGTGTATTTGTTGGA--------TTGAATGTTATTCTTCAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311320 79 - 118206036 TGCT-----------------tatatttagtgatatatttagtgatataACTTGAAA--------------TGGAAATGTATATTTGTTGGA--------TTGAATGTTATTCTTCAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516115 79 - 190429646 CGCT-----------------tatatttagtgatatatttagtgataCAACTTGAAA--------------TGTAAATGTATATTTGTTCGA--------TTCAATGTTATTCTTCAG i rheMac8.chr5 C 0 I 2 s macFas5.chr5 110684237 79 - 189454096 CGCT-----------------tatatttagtgatatatttagtgataCAACTTGAAA--------------TGTAAATGTATATTTGTTCGA--------TTCAATGTTATTCTTCAG i macFas5.chr5 C 0 I 2 s macNem1.NW_012012466v1 13252006 79 + 26754465 CGCT-----------------tatatttagtgatatatttagtgataCAACTTGAAA--------------TGTAAATGTATATTTGTTCGA--------TTCAATGTTATTCTTCAG i macNem1.NW_012012466v1 C 0 I 2 s cerAty1.NW_012001307v1 4154726 79 - 5137665 CGCT-----------------tatatttagtgatatatttagtgataCAACTTGAAA--------------TGTAAATGTATATTTGTTCGA--------TTCAATGTTATTCTTCAG i cerAty1.NW_012001307v1 C 0 I 2 s chlSab2.chr7_KE147969v1_random 59678 79 - 60632 TGCT-----------------TATATTTAGTGATATATTTAGTGATACAACTTGAAA--------------TGTAAATGTATATTTGTTGGA--------TTCAATGTTATTCTTCAG i chlSab2.chr7_KE147969v1_random C 0 I 1 s manLeu1.NW_012104388v1 1969970 79 + 2427316 CGCT-----------------TATATTTAGCGATATATTTAGTGATACAACTTGAAA--------------TGTAAATGTATATTTGTTCGA--------TTCAATGTTATTCTTCAG i manLeu1.NW_012104388v1 C 0 I 285 s colAng1.NW_012119221v1 1256607 79 + 1448899 CGCT-----------------tatatttagtgatatatttagtgatataACTTGAAA--------------TGTAAATGTATATTTGTTGGA--------TTCAATGTTATTCTTCAG i colAng1.NW_012119221v1 C 0 I 2 s calJac3.chr3 52991781 84 - 190850796 CACTTATAG------------TATATTTAGTGATATATTTAGCAATATAACTTGAAA--------------TATAAATGTATATTTGTTGGA--------TTGAATGCTATTCTTCAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155532 73 - 15139346 CACT-----------------TATATTTACTGATATATTTAGCAATATAACTTG--------------------AAATGTATATTTGCTGGA--------CTGAATATTATTCTTCAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939745 84 - 7304997 CACTTACAG------------tatatttagtgatatatttagtgatataACTTGAAA--------------TGTAAATGTATATTTGTTGGA--------TTGAATATTATTCTTCAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355764 96 - 11631747 CACTTACAGtatatttagtgatatatttagtgatatatttagcgatataACTTGAAA--------------TGTAAATGTATATTTGTTGGA--------TTGAATATTATTCTTCAG i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8593200 17 + 8790067 AGCt-----------------tata------aatatattt------------------------------------------------------------------------------ i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76397279 98 + 151834684 ---T-----------------TAAATTCTAGGACATGTACTCTCGCACTGCTTATAAAAAAACACCCACTCAGTAAATGTGATCTTTTTATATCATATCTTTACATGACACCgtcttg i mm10.chr5 C 0 C 0 s canFam3.chr13 47960656 8 + 63241923 AGCT-----------------TATA--------------------------------------------------------------------------------------------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4071343 19 - 5279953 CATT-----------------TAAATTCAGTAGCTT---------------------------------------------------------------------------------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1839726 169 + 4188776 I e micMur3.chrUn_NW_017968520v1 1760502 57 + 3286835 I a score=208261.000000 s hg38.chr4_KI270787v1_alt 28931 29 + 111943 TTTTTTT-TAAAAAACCATGGACTACATTT s panTro5.chr4 119591222 30 - 194502333 TTTTTTTAAAAAAAACCATGGGCTACATTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007486 30 - 195804263 TTTTTTTAAAAAAAACCATGGGCTACATTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438628 30 - 17550833 TTTTTTTAAAAAAAACCATGGACTACATTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311399 29 - 118206036 TTTTTTT-AAAAAAACCATGGACTACATTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516196 29 - 190429646 -TTTTTAAAAAAAAATCATGGACTACATTT i rheMac8.chr5 I 2 C 0 s macFas5.chr5 110684318 29 - 189454096 -TTTTTTAAAAAAAATCATGGACTACATTT i macFas5.chr5 I 2 C 0 s macNem1.NW_012012466v1 13252087 29 + 26754465 -TTTTTTTAAAAAAATCATGGACTACATTT i macNem1.NW_012012466v1 I 2 C 0 s cerAty1.NW_012001307v1 4154807 29 - 5137665 -TTTTTAAAAAAAAATCATGGACTACATTT i cerAty1.NW_012001307v1 I 2 C 0 s chlSab2.chr7_KE147969v1_random 59758 29 - 60632 -TTTTTTTTAAAAAACCATGGACTACATTT i chlSab2.chr7_KE147969v1_random I 1 C 0 s manLeu1.NW_012104388v1 1970334 29 + 2427316 -TTTTTTTTAAAAAATCATGGACTACATTT i manLeu1.NW_012104388v1 I 285 C 0 s colAng1.NW_012119221v1 1256688 29 + 1448899 -TTTTTTTAAAAAAACCATGGACTACATTT i colAng1.NW_012119221v1 I 2 C 0 s calJac3.chr3 52991865 29 - 190850796 -TTTTTTTTAAAAAACCATGGACTACATTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155605 29 - 15139346 -CTTTTTAAAAAAAATCATAGACTAAATTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939829 28 - 7304997 -TTTTTT-TAAAAAACCATGGACTACATTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355860 28 - 11631747 -TTTTTT-TAAAAAACCATGGACTACATTT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8593217 2 + 8790067 ----------------------------tt i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76397377 20 + 151834684 -ttttgtgt---------tgttttacattt i mm10.chr5 C 0 I 60 s canFam3.chr13 47960664 10 + 63241923 --------------------GCATACTTGT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4071362 13 - 5279953 -----------------ATAGAATATTTGT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1839726 169 + 4188776 I e micMur3.chrUn_NW_017968520v1 1760502 57 + 3286835 I a score=721273.000000 s hg38.chr4_KI270787v1_alt 28960 73 + 111943 ATATCTTAAATAAATTAAACAAAAAGTTATATTTTCTTAGATAGTCTAGCACATAGCATCACTTAATAAATGT s panTro5.chr4 119591252 73 - 194502333 ATATCTTAAATAAATTAAACAAAAAGTTATATTTTCTTAGATAGTCTAGCACATAGCATCACTCAATAAATGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007516 73 - 195804263 ATATCTTAAATAAATTAAACAAAAAGTTATATTTTCTTAGATAGTCTAGCACATAGCATCACTCAATAAATGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438658 73 - 17550833 ATATCTTAAATAAATTAAACAAAAAGTTATATTTTCTTAGATAGTCTAGCACATAGCATCACTCAATAAATGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311428 73 - 118206036 ATATCTTAAATAAATTAAACAAAAAGTTATATTTTCTTAGATAGTCTAGCACATAGCATCACTCAATAAATGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516225 73 - 190429646 ATATCTTAAATAAATTAAACCAAAAGTTATATTTTcttagacagtctagcacatagcatcactcaataaatgt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684347 73 - 189454096 ATATCTTAAATAAATTAAACCAAAAGTTATATTTTcttagacagtctagcacatagcatcactcaataaatgt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13252116 73 + 26754465 ATATCTTAAATAAATTAAACCAAAAGTTATATTTTcttagacagtctagcacatagcatcactcaataaatgt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154836 73 - 5137665 ATATCTTAAATAAATTAAACTAAAAGTTATATTTTcttagacagtctagcacatagcatcactcaataaatgt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59787 73 - 60632 ATATCTTAAATAAATTAAACCAAAAGTCATATTTTcttagacagtctagcacatagcatcactcaataaatgt i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1970363 73 + 2427316 ATATCTTAAATAAATTAAACCAAAAGTTATATTTTcttagacagtctagcacatagcatcactcaataaatgt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256717 73 + 1448899 ATATCTTAAATAAATTAAACCAAAAGTTACATTTTCTTAGACTGTCTAGCACATAGCATCACTCAATAAGTGT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52991894 73 - 190850796 ATATCTTAAACGAATTAAACAAAAAGATAAATTTTCTTAGACAGTCTAGCACATAGTTTCACTCAATAAATAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155634 73 - 15139346 ATATCTTAAACAAATTAAACAAAAAGATATATTTTCTTAGTTATTCTAGCACATAGTTTCACTCAATAAATAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939857 73 - 7304997 ATATCCTAAACAAATTAAACAAAAATATATATTTTCTTAGTTATTCTAGCACATAGTTTCACTCAATAAATAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355888 73 - 11631747 ATATCTTTAACGAATTAAACAAAAAGATATATTTTCTTAGTTATTCTAGCACATAGTTTCACTCAATAAACAT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8593219 52 + 8790067 atattataa---aattgtattataGCTTGTAAT----------GTCTGGCA--------CACTCAGGAAATGG i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47960674 42 + 63241923 ATGTCTCATAGCA-------------------------------TTTAGCACATTGTAACACTTAATAAATGG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4071375 42 - 5279953 ATATCTCA------------------CTATGGT-------------TAACATGTAGTAATATTCAACAAATCA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1839726 169 + 4188776 I e micMur3.chrUn_NW_017968520v1 1760502 57 + 3286835 I e mm10.chr5 76397397 60 + 151834684 I a score=108925.000000 s hg38.chr4_KI270787v1_alt 29033 8 + 111943 AACCTTTC s panTro5.chr4 119591325 8 - 194502333 AACCTTTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007589 8 - 195804263 AACCTTTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438731 8 - 17550833 AACCTTTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311501 7 - 118206036 -ACCTTTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516298 8 - 190429646 AACCTTTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684420 8 - 189454096 AACCTTTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13252189 8 + 26754465 AACCTTTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154909 8 - 5137665 AACCTTTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59860 8 - 60632 AACCTTTC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1970436 8 + 2427316 AACCTTTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256790 8 + 1448899 AACCTTTC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52991967 8 - 190850796 AACCTTTC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155707 8 - 15139346 AACCTTTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939930 8 - 7304997 AACGTTTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355961 8 - 11631747 AACCTTTC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1760559 8 + 3286835 aacctttT i micMur3.chrUn_NW_017968520v1 I 57 C 0 s otoGar3.GL873602 8593271 8 + 8790067 AATCTCTT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47960716 8 + 63241923 AACTTTTT i canFam3.chr13 C 0 I 2 s dasNov3.JH568349 4071417 7 - 5279953 AGCTTTT- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1839726 169 + 4188776 I e mm10.chr5 76397397 60 + 151834684 I a score=285641.000000 s hg38.chr4_KI270787v1_alt 29041 25 + 111943 ATATCACATTA----TCACATGACTCTCA s panTro5.chr4 119591333 25 - 194502333 ATATCACATTA----TCACATGACTCTCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007597 25 - 195804263 ATATCACATTA----TCACATGACTCTCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438739 25 - 17550833 ATATCACATTA----TCACATGACTCTCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311508 25 - 118206036 ATATCACATTA----TCACAGGACTCTCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516306 29 - 190429646 ATATCACATGAAAGGTTACATGACTCTCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684428 29 - 189454096 ATATCACATGAAAGATTACATGACTCTCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13252197 29 + 26754465 ATATCACATGAAAGGTTACATGACTCTCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154917 29 - 5137665 ATATCACATGAAAGGTTACATGACTCTCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59868 29 - 60632 ATGTGATATGAAAGGTTACATGACTCTCA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1970444 29 + 2427316 ATATCACATGAAAGGTTACATGACTCTCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256798 29 + 1448899 ATGTGATATGAAAGGTTACATGACTCTCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52991975 25 - 190850796 ATATCACATTA----TCACATGGCTCTCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155715 25 - 15139346 ATATCACATTA----TCACATGGCTCTCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939938 25 - 7304997 ATATCACATTA----TCACATGGCTCTCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355969 25 - 11631747 ATATCACATTA----TCACATGGTTCTCA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1760567 20 + 3286835 ATATCACATTA----TCACATGAC----- i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8593279 25 + 8790067 CTATGATATTA----TCACACAACTCTCA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76397457 20 + 151834684 gtatcccATTC---------TGACATTTA i mm10.chr5 I 60 I 1 s canFam3.chr13 47960726 25 + 63241923 AAATCACATTA----CTATAGAACTGTCA i canFam3.chr13 I 2 C 0 s dasNov3.JH568349 4071424 24 - 5279953 -TATCACATTA----TCACATGACTCTAA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1839726 169 + 4188776 I a score=1738820.000000 s hg38.chr4_KI270787v1_alt 29066 111 + 111943 ACATTTCCAATGGTGAGATTTAGTGAGTGA-TAGAGATAAGTTACTTATATGTTAGTTTTTCATAACAGTCTCAATCAATACTTA-TTTAAATATTTACTCATGCAGATATTC s panTro5.chr4 119591358 111 - 194502333 ACATTTCCAATGGTGAGATTTAGTGAGTGA-TAGGGATAAGTTACTTATATGTTAGTCTTTCATAACAGTCTCAATCAATACTTA-TTTAAATATTTACTCATGCAGATATTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007622 111 - 195804263 ACATTTCCAATGGTGAGATTTAGTGAGTGA-TAGGGATAAGTTACTTATATGTTAGTCTTTCATAACAGTCTCAATCAATACTTA-TTTAAATATTTACTCATGCAGATATTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438764 111 - 17550833 ACATTTCCAATGGTGAGATTTAGTGAGTGA-TAGGGATAAGTTACTTATATGTTAGTCTTTCATAACAGTCTCAATCAATACTTA-TTTAAATATTTACTCATGCAGGTATTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311533 112 - 118206036 ACATTTCCAATGGTGATATTTAATGAGTGA-TAGGGATAAGTTACTTATATGTTAGTCTTTCATAACAGTCTCAATCGATACTTATTTTAAATATTTACTCATGCAGATATTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516335 112 - 190429646 ACATTTCCAATGGTGAGATTTAATGAGTGA-CAGGGATAATTTACTTATATGTTAGTCTTTCACAACAGTCTCAATCAACACTTATTTTAAATATTTACTCATGCAGATATTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684457 112 - 189454096 ACATTTCCAATGGTGAGATTTAATGAGTGA-CAGGGATAATTTACTTATATGTTAGTCTTTCACAACAGTCTCAATCAACACTTATTTTAAATATTTACTCATGCAGATATTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13252226 112 + 26754465 ACATTTCCAATGGTGAGATTTAATGAGTGA-CAGGGATAATTTACTTATATGTTAGTCTTTCACAACAGTCTCAATCAACACTTATTTTAAATATTTACTCATGCAGATATTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4154946 107 - 5137665 ACATTTCCAATGGTGAGATTTAATGAGTGA-CAGGGA-----TACTTATATGTTAGTCTTTCACAACAGTCTCAATCAACACTTATTTTAAATATTTACTCATGCAGATATTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 59897 112 - 60632 ACATTTCCAATGGTGAGATTTAATGAGTGA-CAGGGATAAGTTACTTATACGTTAGTCTTTCACAACAGTCTCAATCAACACTTATTTTAAATATTTACTCACGCAGATATTC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1970473 112 + 2427316 ACATTTCCAATGGTGAGATTTAATGAGTGA-CAGGGATAATTTACTTATATGTTAGTCTTTCACAACAGTCTCAATCAACACTTATTTTAAATATTTACTCATGCAGATATTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256827 112 + 1448899 ACATTTCCAATGGTGAGATTTAATGAGTGA-CAGGGATAAGTTACTTATATGTTAGTCTTTCACAACAGTCTCAATCAACACTTATTTTAAATATTTACTTATGCAGATATTC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52992000 112 - 190850796 ACATTTCCAATGGTGAGATTTGATGAGTGA-TAGGGATAAGTTAGTTATATGTTAGTCTTTCATAACAGTCTCAATCAACACTTATTTTAAATGTTTACTCATGCAGATATTC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155740 112 - 15139346 ACATTTCCAATGGTGAGATTTAATGAGTGA-TAGTGATAAGTTAGTTATATGCTAGTCTTTCATAACAGTCTCAGTCAACACTTATTTTAAATGTTTACTCATGCAGATATTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6939963 112 - 7304997 ACATTTCCAATGGTGAGATTTAATGAGTGA-TAGGGATAAATTAGTTATATGTTAGTATTTCATAACAGTCTCAATCAACACTTATTTTAAATGTTTACTCATGCAAATATTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9355994 112 - 11631747 ACATTTCCAATGGTGAGATTTAATGAGTGA-TAGGGATAAGTTAGTTATATGTTAGTCTTTCATAACAGTCTCAATCAACACTTATTTTAAATGTCTACTCATGCAGATattc i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1760587 110 + 3286835 --ATTTCCAATGGTGAGATATAATGAGTGA-TAGGGAGAAGTCACTTGTCTGTTAGTCTTTTGTAACATTCCCAATCATCACATATTTTAAATATTTACTCATGCATATACTC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1839895 112 + 4188776 ACATTTCCAATGGTGAGATTGAATGAGTGA-CAGGGAGAAGTTACTTGTATGCTAGTCTTTTGTAACAGTCCCAATCATCACATATTTTAAATATTTACTCATGCATATACTC i proCoq1.NW_012140747v1 I 169 C 0 s otoGar3.GL873602 8593304 110 + 8790067 ACATTCCCAGTGGTGACACTTAGTGAGTGG-TGGGGAG--GGCACCTGCATGCGAGTCTTCTGTGACACTCCCAGGCATCACAGATTTTAAGTATTTTCTCATGCATGTACTC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76397478 99 + 151834684 TTATTTCTAATGGTAAGACTTACTGAGTAA-CAGAGT-------ATTATA-GATACTGTTTATAAATTGACTC-----CCACATATTTAAAATATTTACTCACACACATATAA i mm10.chr5 I 1 C 0 s canFam3.chr13 47960751 112 + 63241923 ATATTTCTGATGGTAAGATTTAATGAGTGA-TGGGGACAAATTATTTGCATGTTAGTCTTTTGTAACAGGCTTAACTATCACATATTTTAAATATTGACTCATGCATATACCT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4071448 108 - 5279953 ACATTTTCAATG---AGGTTTCAAGAGTGACCAGGAATAAGTGACTT-TATGTTAGCCTTTTGTAACAGTCTCTATCATCTCATATTTTAAATATTTATTCATGCAT-TATTC i dasNov3.JH568349 C 0 C 0 a score=250427.000000 s hg38.chr4_KI270787v1_alt 29177 20 + 111943 ATTCCTAAAACATT-TT----TGTC s panTro5.chr4 119591469 20 - 194502333 ATTCCTAAAACATT-TT----TGTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007733 20 - 195804263 ATTCCTAAAACATT-TT----TGTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438875 20 - 17550833 ATTCCTAAAACATT-TT----TGTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311645 20 - 118206036 ATTCCTAAAACATT-TT----TGTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516447 20 - 190429646 TTTCCTAAAACATT-TT----TGTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684569 20 - 189454096 TTTCCTAAAACATT-TT----TGTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13252338 20 + 26754465 TTTCCTAAAACATT-TT----TGTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4155053 20 - 5137665 TTTCCTAAAACATT-TT----TGTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 60009 20 - 60632 ATTCCTAAAACATT-TT----TGTC i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1970585 20 + 2427316 TTTCCTAAAACATT-TT----TGTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256939 20 + 1448899 ATTCCTAAAACATT-TT----TGTC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52992112 20 - 190850796 ATTCATAAAACATT-TT----TGTC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155852 20 - 15139346 ATTCATAAAACATT-TT----TGTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6940075 20 - 7304997 ATTTATAAAACATT-TT----TGTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9356106 19 - 11631747 attcataaaaca-t-tt----tgtc i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1760697 24 + 3286835 ATTCCTAAACCATT-TTCATCTACC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1840007 24 + 4188776 GTTCCTAAACCATT-TTCATCTACC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8593414 24 + 8790067 ACTCCCAAACCATT-CCCATCTATC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76397577 21 + 151834684 CTTTCCAAAAAATTATC----TAGG i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4071556 20 - 5279953 ATTCCTAAACCATT-TT----TGTC i dasNov3.JH568349 C 0 I 699 e canFam3.chr13 47960863 0 + 63241923 C a score=173430.000000 s hg38.chr4_KI270787v1_alt 29197 12 + 111943 TAATACGTGCCA s panTro5.chr4 119591489 12 - 194502333 TAATATGTGCCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007753 12 - 195804263 TAATATGTGCCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438895 12 - 17550833 TAATATGTGCCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311665 12 - 118206036 TAATATGTGCCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516467 12 - 190429646 TAATATGTGTCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684589 12 - 189454096 TAATATGTGTCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13252358 12 + 26754465 TAATATGTGTCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4155073 12 - 5137665 TAATATGTGCCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 60029 12 - 60632 TAATATGTGCCA i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1970605 12 + 2427316 TAATATGTGCCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256959 12 + 1448899 TAATATGTGCCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52992132 12 - 190850796 TGATATGTACCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155872 12 - 15139346 TGATATGTACCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6940095 12 - 7304997 TGATATGTACCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9356125 12 - 11631747 taatatgtacca i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1760721 12 + 3286835 TAATATGTGCTA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1840031 12 + 4188776 TAATATGTGCTA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8593438 12 + 8790067 TAACATGTGGTG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76397598 12 + 151834684 TCATAAGTGTCA i mm10.chr5 C 0 I 605 s dasNov3.JH568349 4072275 11 - 5279953 TAATATAT-CCA i dasNov3.JH568349 I 699 C 0 e canFam3.chr13 47960863 0 + 63241923 C a score=4214283.000000 s hg38.chr4_KI270787v1_alt 29209 332 + 111943 AGGACTGAAGAATTACATGTTTT-----------CTATAACACATACAGGA--TGTGCACATGCATCAGTACCTAATCTACTATACTCTAAAATTTAAATATTATCTCATGCTTTCAGCAGGGAGTGATTATTTAACTATATGTATATCATGCTTCTATTTACACCTCTAAATTTAAGTAATAAATagaggcagatttaccaagaaacaatgaatcttaaactttagagtccctcatttgcacaggccccttgcaaggtctaagag----gagttccagcaacagagtcacaaaaacatatattttttgtcaaatttg-aaaatgtaagacattttaactacaattgttt s panTro5.chr4 119591501 332 - 194502333 AGGACTGAAGAATTACATGTTTT-----------CTATAATACATACAGGA--TGTGCACATACATCAGTACCTAATCTACTGTACTCTAAAATTTAAATATTATCTCATGCTTTCAGCAGGGAGTGATTATTTAACTATATGTATATCATGCTTCTATTTACACCTCTAAATTTAAGTAATAAATagaggcagatttgccaagaaacaatgaatcttaaacttttgagtccctcatttgcacaggcccctTGCAAGGTCTAAGAG----GAGTTCCAGCAACAGAGTCACAAGGACATATATTTTTTGTCAAATTTG-AAAATGTAAGACATTTTAACTACAATTGTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121007765 332 - 195804263 AGGACTGAAGAATTACATGTTTT-----------CTATAATACATACAGGA--TGTGCACATACATCAGTACCTAATCTACTGTACTCTAAAATTTAAATATTATCTCATGCTTTCAGCAGGGAGTGATTATTTAACTTTATGTATATCATGCTTCTATTTACACCTCTAAATTTAAGTAATAAATagaggcagatttgccaagaaacaatgaatcttaaacttttgagtccctcatttgcacaggcccctTGCAAGGTCTAAGAG----GAGTTCCAGCAACAGAGTCACAAGGACATATATTTTTTGTCAAATTTG-AAAATGTAAGACATTTTAACTACAATTGTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4438907 332 - 17550833 AGGACTGAAGAATTACATGTTTT-----------CTATAATACATACAGGA--TGTGCACATACATCAGTACCTAATCTACTATACTCTAAAATTTAAATATTATCTCATGCTTTCAGCAGGGAGTGATTATTTAACTATATGTATATCATGCTTCTATTTACACCTCTAAATTTAAGTAATAAATagaggcagatttgccaagaaacaatgaatcttaaactttagagtccctcatttgcacaggcccctTGCAAGGTCTAAGAG----GAGTTCCAGCAACAGAGTCACAAGGACATATATTTTTTGTCAAATTTG-AAAATGTAAGACATTTTAACTACAATTGTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69311677 332 - 118206036 AGGACTGAAGAACTGCATGTTTT-----------CTATAATATGTACAGGA--CGTGCACATGCATCAGTACCTAATCTACTATACTCTAAAATTTACATATTATCTCATCTTTTCAGCAGGGAATGATAATTTAATTATGTGTATATCATGCTTCTATTTATACCTCTAAATTTAAGTAATAAATagaggcagatttgccaagaaacaatgactcttaaactttagagtccctcatttgcacaggtcccttgcaaggtctaagag----gagttccagcaacagagccacaagaacatatattttctgtcaaatttg-aaaacgtaagacattttaactacagttgttt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516479 336 - 190429646 AGGACTGAATAATTGCATGTTTT-----------CTATAATACATACATGA--TGTGCATATGCATCAGTACCTAATCTATTATACTCTAAAATTTAAATATTATCTCATGCTTTCAGCAGGGAGTGATTATTTCATTATGTGTATATCATGCTTCTATTCACACCTCTAACTTTAAGTAATATATagaggcgaatttgccaagaaactacgaatcttaaactttagagtccctcacttgcacaggccccttgcaaggtctaagaggaaagagttccagcaacagagtcacaaggacatatattttttgtcaaatttg-aaaaagtaagatattttaactacagttgttt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684601 336 - 189454096 AGGACTGAATAATTGCATGTTTT-----------CTATAATACATACATGA--TGTGCATATGCATCAGTACCTAATCTATTATACTCTAAAATTTAAATATTATCTCTTGCTTTCAGCAGGGAGTGATTATTTCATTATGTGTATATCATGCTTCTATTCACACCTCTAACTTTAAGTAATATATagaggcgaatttgccaagaaactacgaatcttaaactttagagtccctcacttgcacaggccccttgcaaggtctaagaggaaagagttccagcaacagagtcacaaggacatatattttttgtcaaatttg-aaaaagtaagatattttaactacagttgttt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13252370 336 + 26754465 AGGACTGAATAATTGCATGTTTT-----------CTATAATACATACATGA--TGTGCATATGCATCAGTACCTAATCTATTATACTCTAAAATTTAAATATTATCTCATGCTTTCAGCAGGGAGTGATTATTTCATTATGTGTATATCATGCTTCTATTCACACCTCTAACTTTAAGTAATATATagaggcgaatttgccaagaaactacgaatcttaaactttagagtccctcacttgcacaggccccttgcaaggtctaagaggaaagagttccagcaacagagtcacaaggacatatattttttgtcaaatttg-aaaaagtaagatattttaactacagttgttt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4155085 336 - 5137665 AGGACTGAATAATTGCATGTTTT-----------CTATAATACATACATGA--TGTGCATATGCATCAGTACCTAATCTATTATACTCTAAAATTTAAATATTATCTCATGCTTTCAGCAGGGAGTGATTATTTCATTATGTGTATATTATGCTTCTATTCACACCTCTAACTTTAAGTAATAAATagaggcgaatttgccaagaaactacgaatcttaaactttagagtccctcacttgcacaggccccttgcaaggtctaagaggaaagagttccagcaacagagtcacaaggacatatattttttgtcaaatttg-aaaaagtaagatattttaactacagttgttt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 60041 335 - 60632 AGGACTGAATAACTGCATGTTTT-----------CTATAATACATACATGA--TGTGCATATGCATCAGTACCTAATCTATTATACTCTAAAATTTAAATATTATCTCATGCTTTCAGCAGGGAGTGATTATTTCATTATGTGTATATCATGCTTCTATTCACACCTCTAACTTTAAGTAATAAATagaggcgaatttgccaagaaactatgaatctcaaactttagagtccctcacttgcacaggccccttgcaaggtctaagaggaaagagttccagcaacagagtcacaaggacatata-tttttgtcaaatttg-aaaaagtaagatattttaactacaattgttt i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1970617 336 + 2427316 AGGACTGAATAATTGCATGTTTT-----------CTATAATACATACATGA--TGTGCATATGCATCAGTACCTAATCTATGATACTCTAAAATTTAAATATTATCTCATGCTTTCAGCAGGGAGTGATTATTTCATTATGTGTATATCATGCTTCTATTCACACCTCTAACTTTAAGTAATAAATagaggcgaatttgccaagaaactacgaatcttaaactttagagtccctcacttgcacaggccccttgcaaggtctaagaggaaagagttccagcaacagagtcacaaggacatatattttttgtcaaatttg-aaaaagtaagatattttaactacagttgttt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1256971 336 + 1448899 AGGACTGAATAACTGCATGTTTT-----------CTATAATACATACATGA--TGTGCATATGCATCAGTACCTAATCTATTATACTCTAAAATTTAAATATTATCTCATGTTTTCAGCAGGGAGTGATTATTTCATTATGTGTATATCATGCTTCTATTCACACCTCTAATTTTAAGTAATAAATagaggtgaatttgccaagaaacaatgaatcttaaactttagagtccctcacttgcacaggcccgttgcaaggtttaagaggaaagagttccagcaacagagtcacaaggacatatattttttgtcaaatttg-aaaaagtaagatattttaactacaattgttt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52992144 330 - 190850796 AGGACCAAAGAATTGCATGTTTT-----------CTATAATACATACAGGA--TGTGCATATGTATCAGTACCTAATGTACCATACTATAAAATTTAAATATTATCTCATGCTTTCAGCAGGGAGTAATTTTTAAATTATGTGTATATCATGCTTCTATTTACAATTGTAACTTTAAGTAATAAAGagaggcagatttgccaaaaaacaatgaatcttaaactttagagtctttcacttgcacaggcccc-tgcaaggtctaagag----gagttccagcaacagagttgcagggatttaaattttttatcagatttg-gaaaagcaag-cattttgactacatttattt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8155884 323 - 15139346 AGGACTGAAGAATCGCATGGTTT-----------CTACGATACATACAGGA--TGTGCACAGGTATCAGTACCCAATGTACTACACTCTAAAATTTAAATATT-----ATGTTTTCAGCAGGGAGTAATTTTTAAATTATATGTATATCATGCTTCTATTTACAATTCTAACTTTAAGTAATAA--agaggcagatttgccaaaaaacaataaatcttaaactttagagtctttcacttgcacaggcccc-tgcaaggtctaagag----gagttccagcaacagagtcacagggatttaaattttttgtcaaatttg-aaaaagcaag-cattttaactacatttattt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6940107 328 - 7304997 AGGACCGAAGGATTGCATGTTTT-----------CTACAATACATACAGGA--GGTGCACATGTATCAGTACCTAATGTACTATACTCTAAAATTTAAATATTATCCCATGCTTTCAGCAAGGAGTAATTTTTAAATTATGTGTATATCACGCTTCTATTTACAATTCTAACTTTAAGTAACAA--agaggcagatttgccaaaaaacaatgaatctttaactttagagtctttcacttgcacaggcccc-tgcaaagcctaagag----gagttccagcaaccgaatcgcagggatttaaattttttgtcaaatttg-aaaaagcaag-cattttaactacatttattt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9356137 324 - 11631747 aggactgaggaATTGCATGTTTT-----------CTACAATACATACAGGA--TGTGCATATGTATCAGTACCTAATGTACTAT--TCTAAAATTTAAATATTATCTCATGCTTTCAGCAGGGAGTAATTTTTTAATTATGTGTATATCATGCTTCTATTTACAATTCTAACTTTAAGTAAT----agaggcagatttgccaaaaaacaatgaatcttaaactttagagtctttcacttgcacaggcccc-tgcaaggtctaagag----gagttccagcaacagagtcgcagggatttaaattttttgtcacatttg-aaaaagcaag-cattttaactacatttattt i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1760733 315 + 3286835 AGCACTGAAGAATC--ACATTTT-----------CTATCATGTATAGAGGA--TGGATATATGCATTAGCACCTAATGTACTAAATTCTAAGATTTAAATATTATCTAATGTTTTCAACAGGGAGTAACTGTTGAATA-----------ATGCTTCTATTTATACTTCTAAATTTAAGTAACAAATagaggcagatttaccatgaagcaatgaatctcaagcttt---gtttctcacttgcacagtccccttccaaggtctaagag----gggctccagtaacatattcacatggacatata-tttttgtaaaatttg-aaaaagtgagacatcttaactacaattgttt i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1840043 337 + 4188776 AGCACTGAAGAATT--ACAGTGTATAGAGGATGCATATAATGTATAGAGGA--TGCATATACACATTAGCACCTCATTTACTAAATTCTAAGATTTAAATATCATCTACTGTTTTCAACAGGGAATAATTGTTAAATAATGTGTATATCATGCTTCTATTTACACTTCTAATTTTAAGTAACAAATagaggcagatttcccatgaaataatgtatcttaagcttt---gtttctcacttgcacaatcctcttccaaggtctaagag----ggactccagcaatatattcacacagacatata-tttttttaaaatttg-aaaaagtcagacatcttaactgtaattgttt i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8593450 326 + 8790067 AGTACTGAAGAATT--ATGTTTT-----------CTACAATACATAGAAGA--GACATGTATACATTAACACCTAATGTACCAAATTCTAAGATTTAAATATTACCTAATATTTTCAGCCAGGAGTAATTGTTAACTGTTATCTTTATTATGCTTCCGTTTATACTTCCAATTCTAAGCAATAAGTACaggcagatttaccatgaaatactgaatcttaagcttt---atttctcacttgcactgtccccttccaaggtctaagag----gagctccagcaacctattcacatggatg-ata-tttttgcaaaatttgaaaaaagtgagacatcttagtaaacactggtt i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4072286 314 - 5279953 GACACTAAAGAGTTAGATGTTTT-----------CTACAATACATAATGGATGTGTGTATATGCATCATCACCTAATGTACTATTCTCTAAAATTTAAATGTTATGTAATATTTATGGTAGGAAGTAATTATTAAATAATG----TATCATGTTTCTATTTATATTTATAATTTCAAGAATAAAAcagaagcag-tttaccacaaaataatgaatcttaag-tctagtgtccctaact-------------tcccaggcttaggag----caaccctagtaatgtattcacacggacatata-tttttgtaaaatttg-taaaagaaagctgttttcactacaattggtt i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76397610 605 + 151834684 I e canFam3.chr13 47960863 0 + 63241923 C a score=46026.000000 s hg38.chr4_KI270787v1_alt 29541 3 + 111943 aag s panTro5.chr4 119591833 3 - 194502333 AAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121008097 3 - 195804263 AAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4439239 3 - 17550833 AAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69312009 3 - 118206036 aag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516815 3 - 190429646 aag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684937 3 - 189454096 aag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13252706 3 + 26754465 aag i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4155421 3 - 5137665 aag i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 60376 3 - 60632 aag i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1970953 3 + 2427316 aag i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1257307 3 + 1448899 aag i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52992474 3 - 190850796 aag i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8156207 3 - 15139346 aag i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6940435 3 - 7304997 aag i cebCap1.NW_016107439v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1761048 3 + 3286835 aag i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1840380 3 + 4188776 aag i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8593776 3 + 8790067 gag i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4072600 3 - 5279953 aag i dasNov3.JH568349 C 0 I 729 e mm10.chr5 76397610 605 + 151834684 I e aotNan1.NW_018493494v1 9356461 0 - 11631747 C e canFam3.chr13 47960863 0 + 63241923 C a score=66657.000000 s hg38.chr4_KI270787v1_alt 29544 5 + 111943 aGCTT s panTro5.chr4 119591836 5 - 194502333 AGCTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121008100 5 - 195804263 AGCTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4439242 5 - 17550833 AGCTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69312012 5 - 118206036 aGCTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516818 5 - 190429646 agctt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684940 5 - 189454096 agctt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13252709 5 + 26754465 agctt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4155424 5 - 5137665 agctt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 60379 5 - 60632 agctt i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1970956 5 + 2427316 agctt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1257310 5 + 1448899 agctt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52992477 5 - 190850796 agctt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8156210 5 - 15139346 agctt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6940438 5 - 7304997 agctt i cebCap1.NW_016107439v1 C 0 I 54 s micMur3.chrUn_NW_017968520v1 1761051 5 + 3286835 agctt i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1840383 5 + 4188776 agctt i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8593779 5 + 8790067 aacgt i otoGar3.GL873602 C 0 C 0 e mm10.chr5 76397610 605 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e aotNan1.NW_018493494v1 9356461 0 - 11631747 C e canFam3.chr13 47960863 0 + 63241923 C a score=24024.000000 s hg38.chr4_KI270787v1_alt 29549 2 + 111943 TC s panTro5.chr4 119591841 2 - 194502333 TC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121008105 2 - 195804263 TC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4439247 2 - 17550833 TC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69312017 2 - 118206036 TC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516823 2 - 190429646 tc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684945 2 - 189454096 tc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13252714 2 + 26754465 tc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4155429 2 - 5137665 tc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 60384 2 - 60632 tc i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1970961 2 + 2427316 tc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1257315 2 + 1448899 tc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52992482 2 - 190850796 tc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8156215 2 - 15139346 cc i saiBol1.JH378162 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1761056 2 + 3286835 tc i micMur3.chrUn_NW_017968520v1 C 0 I 418 s proCoq1.NW_012140747v1 1840388 2 + 4188776 tc i proCoq1.NW_012140747v1 C 0 I 16566 s otoGar3.GL873602 8593784 2 + 8790067 tc i otoGar3.GL873602 C 0 C 0 e mm10.chr5 76397610 605 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e aotNan1.NW_018493494v1 9356461 0 - 11631747 C e cebCap1.NW_016107439v1 6940443 54 - 7304997 I e canFam3.chr13 47960863 0 + 63241923 C a score=8666.000000 s hg38.chr4_KI270787v1_alt 29551 1 + 111943 C s panTro5.chr4 119591843 1 - 194502333 C i panTro5.chr4 C 0 C 0 s panPan2.chr4 121008107 1 - 195804263 C i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4439249 1 - 17550833 C i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69312019 1 - 118206036 C i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516825 1 - 190429646 c i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110684947 1 - 189454096 c i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13252716 1 + 26754465 c i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4155431 1 - 5137665 c i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7_KE147969v1_random 60386 1 - 60632 c i chlSab2.chr7_KE147969v1_random C 0 C 0 s manLeu1.NW_012104388v1 1970963 1 + 2427316 c i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1257317 1 + 1448899 c i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52992484 1 - 190850796 c i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8156217 1 - 15139346 c i saiBol1.JH378162 C 0 I 691 s otoGar3.GL873602 8593786 1 + 8790067 t i otoGar3.GL873602 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761058 418 + 3286835 I e mm10.chr5 76397610 605 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e aotNan1.NW_018493494v1 9356461 0 - 11631747 C e cebCap1.NW_016107439v1 6940443 54 - 7304997 I e canFam3.chr13 47960863 0 + 63241923 C a score=6228.000000 s hg38.chr4_KI270787v1_alt 29552 1 + 111943 C s panTro5.chr4 119591844 1 - 194502333 C i panTro5.chr4 C 0 C 0 s panPan2.chr4 121008108 1 - 195804263 C i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4439250 1 - 17550833 T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69312020 1 - 118206036 C i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111516826 1 - 190429646 c i rheMac8.chr5 C 0 I 5577 s macFas5.chr5 110684948 1 - 189454096 c i macFas5.chr5 C 0 I 5596 s macNem1.NW_012012466v1 13252717 1 + 26754465 c i macNem1.NW_012012466v1 C 0 I 5886 s cerAty1.NW_012001307v1 4155432 1 - 5137665 c i cerAty1.NW_012001307v1 C 0 I 4415 s chlSab2.chr7_KE147969v1_random 60387 1 - 60632 c i chlSab2.chr7_KE147969v1_random C 0 N 0 s manLeu1.NW_012104388v1 1970964 1 + 2427316 c i manLeu1.NW_012104388v1 C 0 I 5570 s colAng1.NW_012119221v1 1257318 1 + 1448899 c i colAng1.NW_012119221v1 C 0 I 2216 s calJac3.chr3 52992485 1 - 190850796 c i calJac3.chr3 C 0 I 525 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761058 418 + 3286835 I e mm10.chr5 76397610 605 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e aotNan1.NW_018493494v1 9356461 0 - 11631747 C e cebCap1.NW_016107439v1 6940443 54 - 7304997 I e saiBol1.JH378162 8156218 691 - 15139346 I e otoGar3.GL873602 8593787 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C a score=2107053.000000 s hg38.chr4_KI270787v1_alt 29553 2414 + 111943 ggggggcagttccaagatggctgaataggaaggaacagctccagtctatagctcccagcatgagtgacacagaagacggatgatttctgcatttccaactgatgtaccagtttcatctcactggggattgttggacagtgggtgcaggacagtgggtgcagcacactgagcgtgacccgaagcagggtgaggcatcacctcacccgggaagcaaaaggggtcagggaattccctttcctagtcaaggaaaggggtgacagacagcacctggaaaatcaggtcactcccaccctaatactgcgcttttccaacggtcttagcaaacagcacaccaggagactatatcctgcgcctggctcggagggtcctacgcccactgagcctggctcattgctagcacagcagtctgagatcaaactgcaaggcggcagcgaggctgggggaggggcacccgccattgccgaggcttgagtaggtaaacaaagcagccaggaagctcgaactgggtggagcccaccgcagctcaaggaggcctgcctgcctctttagactccacctctgcgggcagggcacagacaaacaaaaggcagcagaaacctctgcagacttaaatgtccctgtctgatagctttgaagagagtagtggttctcccagcatgcagcttgagatctgagaacggacagactgcctcctcaagtgggtccctgacccctgagtagcctaactgggaggcacctcccagtaggggcagactgacacctcacacggccaggtacccctctgagatgaaacctccagaggatcgatcagacagcaacatttgctgttcagcaatatttgctgttctgcagcctccgctgctgatacccaggcaaacagggtctggagtggacctctggcaaactccaacacacctgcagctgagggtcctgactgttagaaggaaaactgacaagcagaaaggacatctacaccaaaaccccatctgtacatcaccatcatcaaagaccaaaggtagataaaaccaaaaagatggggataaaacagaacaggaaaacttaaaattctaaaaatcagagcgcctctcctcctccaaacgaatgcagctcctcaccagcaatggaacaaagctgggcagagaatgactttgatgagttgagagaagaaggcttcagatgatcaaacttctccgaactaaaggtggaagtttgaacccatcgcaaagaagttaaaaaccttgaaaaaagattagacgaatggctaactaaaataaccagtgcagagaagtccttaaaggacctgatggagctgaaaaccacggcatgagaactacgtgacgaatgcacaagcatcagtagccgattcgatcaactggaagaaagggtatcagtgatggaagatgaaatgaatgaaatgaagcaagaagagaagtttagagaaaaaagaataaaaagaaacgaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctgaccagtgtgcctcaaagtgatggggagaatggaaccaagttggaaaacactctgcaggatattatccaggagaacttccccaatctagcaaagcaggccaatgttcaaattcaggaaatacagagaatgccacaaagatactccttgagaagagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcaggttacccacaaagggaagcccatcagattaacagctgatctcttggcagaaactctacaagccaggagagcatttctttaag----aatattcaacatttttaaagaaaagaattttcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatactttacagataagcaaatgctgagagattttgtcaccaccaggcctgccctacaagagctcctgaaggaagcactaaacatggaaaggaacagctggtaccagccgctgcaaaaacatgccaaattgtaaagaccatcgaggctaggaagaaactgcatcaactaacgagcaaaataaccagctaacatcataatgacaggatcaaattcacacataacaatattaacctgaaatttaaatcggctaaatgctccaattaaaagacacagactggcaaattggataaacagtcaagacccaccagtgtgctgtattcaggaaacccatctcgcgtgcagagacacacataagctcaaaataaagggatggaggaagatctaccaagcaaatggaaaac----aaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagac----aaggccattacataatggtaaagggat s panTro5.chr4 119591845 2422 - 194502333 ggggggcagttccaagatggctgaataggaaggaacagctccagtctatagctcccagcgtgagtgacacagaagatggatgatttctgcatttccaactgatgtaccagtttcatctcactagggattgttggacagtgggtgcaggacagtgggtgcagcacactgaacgtgagccacagcagggcgaggcatcacctcacccaggaagcacaaggggtcagggaattccctttcctagccaaggaaaggggtgacagacggcacctggaaaatcagatcactcccaccctaatactgcgcttttccaacggtcttagcaaacagcacaccaggagactctatcctgcgcctggctcggagggtcctacgcccactgagccttgctcattgctagcacagcagtctgagatcaaactgcaaggcggcagcgaggctgggggaggggcacccgccattgccgaggctggagtaggtaaacaaagcagccaggaagcttgaactgggtggagcccaccgcagctcgaggaggcctgcctgcctctttagactccacctctgcgggcagggcacagacaaacaaaaggcagcagaaacctctgcagacttaaatgtccctgtctgatagctttgaagagagtagtggttctcccagcatgcagcttgagatctgagaacagacagactgcctcctcaagcgggtccctgacccccgagtagcctatctggggtgcacctctcagtaggggcagaccgacacctcacacggctgggtacccctctgagatgaaacttccagaggaacgatcagacagcaacatttgctgttcagcaatattcactgttctgcagcctccgctgctgatacccaggcaaacagggtctggagtggacctctggcaaactccaacacacctgcagctgagggtcctgactgttagaaggaaaactgacaagcagaaaggacatctacaccaaaaccccatctgtacatcaccatcatcaaagaccaaaggtagataaagccacaaagatggggataaaacagaacaggaaaacttaaaattctaaaaatcagagtgcctctcctcctccaaacaaacgcagctcttcatcagcaatggaacaaagctgggcggagaatgactttgaagagttgagagaagaaggcttcagatgatcaaacttgtccgagctaaaggaggaagtttgaacccatcgcaaagaagttaaaaaccttgaaaaaagattagatgaatggctaactaaaataaccagtgcagagaagtccttaaaggacctgatggagctgaaaaccacggcacgagaactacgtgacgaatgcacaagcttcagtagccgattcgatcaactggaagaaagggtatcagtgatggaagatcaaatgaatgaaatgaagcgagaagagaagtttagagaaaaaagaataaaaagaaactaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacttctgattggtgtgcctgaaagtgacggggagaatggaaccaagttggaaaacactctgcatgatactatccaggagaacttccccaatctagcaaggcaggccaacattcaaattcaggaaatacagagaatgccacaaagatactcctctagaagagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttacgggcagccagagagaaaggtcgggttacccacaaagggaagcccatcagattaacagctgatctcttggcagaaactctacaagccaggagagtatttctttaag----aatattcaacatttttaaagaaaagaattttcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatactttacagataagcaaatactgagagattttgtcaccaccaggcctgccctacaagagctcctgaaggaagcactaaacatggaaaggaacagctggtaccagccactgcaaaaacatgccaaattttaaagaccatcgaggctaggaagaaactgcatcaactaacgagcaaaataaccagctaacatcataatgacaggatcaaattcacacataacaatattaacctgaaatttaaatgggctaaatgctccaattaaaagacacagactggcaaattggataaacagtcaagacttgtcagtgtgctgtattcaggaaacccatctcatgtgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggat i panTro5.chr4 C 0 I 5744 s panPan2.chr4 121008109 2421 - 195804263 ggggggcagttccaagatggctgaataggaaggaacagctccagtctatagctcccagcgtgagtgacacagaagatggatgatttctgcatttccaactgatgtaccagtttcatctcactagggattgttggacagtgggtgcaggacagtgggtgcagcacactgaacgtgagccacagcagcgcgaggcatcacctcacccaggaagcacaaggggtcagggaattccctttcctagccaaggaaaggggtgacagacggcacctggaaaatcagatcactcccaccctaatactgcgcttttccaacggtcttagcaaacagcacaccaggagactatatcctgcgcctggctcggagggtcctacgcccactgagccttgctcattgctagcacagcagtctgagatcaaactgcaaggcggcagcgaggctgggggaggggcacccgccattgccgaggctggagtaggtaaacaaagcagccaggaagcttgaactgggtggagcccaccgcagctcgaggaggcctgcctgcctctttagactccacctctgcgggcagggcacagacaaacaaaaggcagcagaaacctctgcagacttaaatgtccctgtctgatagctttgaagagagtagtggttctcccagcatgcagcttgagatctgagaacagacagactgcctcctcaagcgggtccctgacccccgagtagcctatctggggtgcacctctcagtaggggcagactgacacctcacacggctgggtaccccactgagatgaaacttccagaggaacgatcagacagcaacatttgctgttcagcaatattcactgttctgcagcctccgctgctgatacccaggcaaacagggtctggagtggacctctggcaaactccaacacacctgcagctgagggtcctgactgttagaaggaaaactgacaagcagaaaggacatctacaccaaaaccccatctgtacatcaccatcatcaaagaccaaaggtagataaagccacaaagatggggataaaacagaacaggaaaacttaaaattctaaaaatcagagcgcctctcctcctccaaacaaacgcagctcttcatcagcaatggaacaaagctgggtggagaatgactttgaagagttgagagaagaaggcttcagatgatcaaacttgtccgagctaaaggaggaagtttgaacccatcgcaaagaagttaaaaaccttgaaaaaagattagatgaatggctaactaaaataaccagtgcagagaagtccttaaaggacctgatggagctgaaaaccacggcacgagaactacgtgatgaatgcacaagcttcagtagccgattcgatcaactggaagaaagggtatcagtgatggaagatcaaatgaatgaaatgaagcgagaagagaagtttagagaaaaaagaataaaaagaaactaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacttctgattggtgtgcctgaaagtgacggggagaatggaaccaagttggaaaacactctgcatgatactacccaggagaacttccccaatctagcaaggcaggccaacattcaaattcaggaaatacagagaatgccacaaagatactcctctagaagagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttacgggcagccagagagaaaggtcgggttacccacaaagggaagcccatcagattaacagctgatctcttggcagaaactctacaagccaggagagtatttctttaag----aatattcaacatttttaaagaaaagaattttcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatactttacagataagcaaatactgagagattttgtcaccaccaggcctgccctacaagagctcctgaaggaagcactaaacatggaaaggaacagctggtaccagccactgcaaaaacatgccaaattttaaagaccatcgaggctaggaagaaactgcatcaactaacgagcaaaataaccagctaacatcataatgacaggatcaaattcacacctaacaatattaacctgaaatttaaatgggctaaatgctccaattaaaagacacagactggcaaattggataaacagtcaagactcgtcagtgtgctgtattcaggaaacccatctcatgtgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaaac-aaaaaaggcaggggttgcaatcctggtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4439251 2421 - 17550833 ggggggcagttccaagatggctgaataggaaggaacagctccagtctatagctcccagcgtgagtgacacagaagatggatgatttctgcatttccaactgatgtaccagtttcatctcactggggattgttggacagtgggtgcaggacagtggttgcagcacactgaacgtgagccacagcaggtcgaggcatcacctcacccaggaagcacaaggggtcagggaattccctttcctagccaaggaaaggggtgacagatggcacctggaaaatcagatcactctcaccctaatactgcgcttttccagcggtcttagcaaacagcacaccaggagactatatcctgcacctggctcggagggtcctacgcccactgagcctcgctcattgctagcacagcagtctgagatcaaactgcaaggcggcagcgaggctgggggaggggcacgcgccattg-cgaggcttgagtaggtaaacaaagcagccaggaagcttgaactgggtggagcccaccgcagctcgaggaggcctgcctgcctctttagactccacctctgcgggcagggcacagacaaacaaaaggcagcagaaacctctgcagacttaaatgtccctgtctgatagctttgaagagagtagtggttctcccagcatgcagcttgagatctgagaacggacagactgcctcctcaagcgggtccctgacccccgagtagcctatctggggtgcacctcccagtaggggcagactgacacctcacacggctgggtacccctctgagatgaaacttccagaggaacgatcagacagcaacatttgctgttcagcaatattcgctgttctgcagcctccgctgctgatacccaggcaaacagggtctggagtggacctctggcaaactccaacacacctgcagctgagggtcctgactgttagaaggaaaactgacaagcagaaaggacatctacaccaaaaccccatctgtacatcaccatcatcaaagaccaaaggtagatgaagccacaaagatgcggataaaacagaacagcaaaacttaaaattctaaaaatcacagcgcctctcctcctccaaacaaacgcagctcttcaccagcaatggaacaaagctgggcggagaatgactttgatgagttgagagaagaaggcttcagatgatcaaacttctccgagctaaaggaggaagtttgaacccatcgcaaagaagttaaaaaccttgaaaaaagattagatgaatggctaactaaaataaccagtgcagagaagtccttaagggacctgatggagctgaaaaccatggcacgagaactacgtgacgaatgcacaagcttcagtagccgatttgatcaactggaagaaagggtatcagtgatggaagatcaaatgaatgaaatgaagcgagaagagaagtttagagaaaaaagaataaaaagaaacgaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacttctgattggtgtgcctgaaagtgacggggagaatggaaccaagttggaaaacactctgcacgatactatccaggagaacttccccaatctagcaaggcaggccaacattcaaattcaggaaatacagagaacgccacaaagatactcctcgagaagagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttacccacaaagggaagcccattagactaacagcagatctcttggcagaaactctacaagccaggagagtatttctttaag----aatactcaacatttttaaagaaaagaattttcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatactttacagataagcaaatactgagagattttgtcaccatcaggcctgccctacaagagctcctgaaggaagcactaaacatggaaaggaacagctggtaccagccactgcaaaaacatgccaaattttaaagaccatcgaggctaggaagaaactgcatcaactaacgagcaaaataaccagctaacatcataatgacaggatcaaattcacacctaacaatattaacctgaaatttaaatgggctaaatgctccaattaaaagacacagactggcaaattggataaacagtcaagactcatcagtgtgctgtattcaggaaacccatctcatgtgcagaggcacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69312021 2410 - 118206036 Ggagggcggttccaagatggctgaat----aggaacagctccagtctacagctcccagtgtgagtgacacaggagacagatgatttctgcatttccaacccaggtactgggttcatatcactgaagattgtcagacagtgggtgcaggacagtgggtgcagtgcaccaagcatcagccgaagcaaggtgaggcatcacctcacccaggaagtgcaaggagtcagggaattccctttcttagctaagaaaagcggtaacagacagcacctggaaaatcaggtcactccaaccctaaaactgcgcttttccgatggtcttagcaaatgacacaccaggagattatatcccgcgccaggcttggaggttcctatgcccatggagcctc-caaattgctagcaaagcagtctgaaatcaaactgcaaggcggcagcaaggctgggggaggggcgtctgccattgctgaggcttgaataggtaaacaaagcagcccggaagatcgaactgggtgcagcccaccacagctcaaggaggcctgtctgcctctgtagactccacctctggggacagggcacagacaaacaaaaggcagcagaaacctctgcagacttaaatgtccctgtctgacagctttgaagagagcagtggttctcccagcacgcagcttgagatctgagaaaagacagactgcctgctcaagtgggtccctgacccctgagtagcgtaactgggaggcacctcccagtaggggcagactgacacctcacacggccgggtacccctctgagatgaaacctccagaggaacaatcagacagcaatatttgctgttcagcaatattcaccgttctgtagcctccgctgcc--tacccaggcaaacagggtctggagtggacctctggcaaactccagcagacctgcagctgagggtcctgactgttagaaggaaaactaacaagcagaaaggacatccacaccaaaaccccatttgtacatcaccatcatcaaagaccaaaggtagataaaaccacaaagatggggaaaaaacagagcagaaaaaccgaaaattctaaaagtcagagcacctctcctcctccaaaggaacgcagttcctcaccagcaatggaacaaagctggacagagaatgactttgacaaattgagagaagaagacttcagatgatcaaacttctctgagctaaaggaggaagtttgaagccatggcaaagaagttaaaaaccttgaaaaaagattagacaaatggctaactagaataaccaatgcagagaagtccttaaaggacctgatggagctgaaaaccatggcacgaaaactatgtgacgagtgcacaagcttcagtagccggttcaatcaactggaagaaagggtagcagtgatggaagatcaaatgaatgaaatgaagtgagaagagaagtttagagaaaacagaataaaaagaaatgaacaaagcctccaagaaatatgggactatgtgaaaacaccaaatctacatctgattggtgtacctgaaagtgacagggagaatggaaccaagttggaaaacactctgcaggatattatccaggagaacttccccaatctagcaaggtaggccaacattcaaattcaagaaatacagagaacatcacaaagatactccttgagatgagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggttgggttacccacaaa-tgaagcccatcagactaagagctgatctcttggcagaaactctacaagccagaagagag------tgggggccgatattcaacattcttaaagaaaagaatttgcaacccagaatctcatatccagccaaactaagcttcataagtgaaggagaaataaaatactttacagacaagcaaatgctgagagattttgtcaccaccagacctgccctacaagagctcctaaaggaagcactaaacatggaaaggaacaactggtaccagccactgcaaaaacatgccaaattgtaaagaccatcaaggctaggaagaaactgcatcaactaacgagcaaaataaccagctaacatcataataacaggatcaaattcacacctaacaatattaaccttaaatgtaaatgggctaaatgctccaattaaaag--acagactggcaaattggataaagagtcaagacccatcagtgtgctatattcaggaaacccaactcacgtgcagcaacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaagcaaaaaaaggcagaggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggat i nomLeu3.chr9 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761058 418 + 3286835 I e mm10.chr5 76397610 605 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e aotNan1.NW_018493494v1 9356461 0 - 11631747 C e cebCap1.NW_016107439v1 6940443 54 - 7304997 I e saiBol1.JH378162 8156218 691 - 15139346 I e calJac3.chr3 52992486 525 - 190850796 I e otoGar3.GL873602 8593787 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C e colAng1.NW_012119221v1 1257319 2216 + 1448899 I e manLeu1.NW_012104388v1 1970965 5570 + 2427316 I e cerAty1.NW_012001307v1 4155433 4415 - 5137665 I e macNem1.NW_012012466v1 13252718 5886 + 26754465 I e rheMac8.chr5 111516827 5577 - 190429646 I e macFas5.chr5 110684949 5596 - 189454096 I a score=422015.000000 s hg38.chr4_KI270787v1_alt 31967 818 + 111943 caattcaacaagaaaagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtcctgagtgatctacaaagagacttagactcccacacaataataatgggagactttaacaacccactgccaacattagacagatcaacgagacagaaagtcaacaaggatatccaggaattgaact-aggtcctcacctagcggacctaatagacatctacagaactctccaccacaaatcaatgaactgtacattcttctcagcaccgcaccacacgtattccaaaattgaccacatagttggaagtaaagcactcctcagcaaatgcaaaagaacaaaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaagaaactcactcaaaaccactcaactacatggaaactgaacaacctgctcctgaatgagtactgggtacataacgaaatgaaggcagaaatcaagatgttctttgaaaccaacgagaacaaagacatgacatatcagaatctctgggacacatttaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaagatcagagcagaattgaaggagatagagacacaaaaaacccttcaaaaaatcaatgaatccaggagctggttttttgaaaagatcaacaaaattgatagac s panPan2.chr4 121010530 817 - 195804263 caattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtcctgagtgacctaaaaagagacttagactcccacacattaataatgggagactttaacaccccactgccaacattaaacagatcaatgagacagaaagttaacaaggatatccaggaattgaactcagctctgcaccaagcggacctaatagacatctacagaactctccaccacaaatcaatgaaccatacattcttctcagcaccgcaccacatttattccaaaattgaccacatagttggaagtaaagcactcctcagcaaatgtaaaagaacagaaattgtaacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaagaaactcactcaaaaccgctcaattacatggcaactgaacaacctgctcctgaatgactactgggtacataacgaaatgaaggcagaaatcaagatgttctttgaaaccaacaagaacaaagacacaacataccagaatctctgggatacatttaaagtagtgtgtagagggaaacttatagcactaaatg--cacaagagaaaacaggaaagatctaaaactgacgccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaagatcagagcagaactgaaggagatagagacacaaaaaacccttcaaaaaatcaatgaatccaggagctggttttttgaaaagatcaacaaaattgatagac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4441672 819 - 17550833 caattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtcctgagtgacctacaaagagacttagactcccacacaataataatgggagactttaacaccccactgccaacattagacagatcaatgagacagaaagttaacaaggatattcaggaattgaactcagctctgcaccaagcagacctaacagacatctacagaactctccaccacaaatcaataaaccatacattcttctcagcaccgcaccatacttattccaaaattgaccacataattggaagtaaagcactcctcagcaaatgtaaaagaacagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaagaatctcactcaaaaccgctcaattacatggaaactgaacaacctgctcctgaatgagtactgggtacataacgaaatgaaggcagaaatcaagatgttctttgaaaccaacgagaacaaagacacagcataccagaatctctgggacacattcaaagcagtgtgcagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaactgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaaggtagcagaaggcaagaaatagctaagatcagagcagaactgaaggagatagagacacaaaaaacccttcaaaaaatcaatgaatccaggagctggttttttgaaaagatcaacaaaattgatagac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69314431 815 - 118206036 caattcaacaag---agctaactatcctaaatatatatgcacccaacaaaggagcacacagattcataaagcacgtccttagagaccta-aaaaagacttagattcccacacaataataatgggagactttaacaccccactgtcaacattagacagataaacgagacagaaagttaacaaggatatccagaaattgaactcagctctgcaccaagcggacctaatagacatctgcagaactctccaccccaaatcaacagaatatacattcttctcagcaccacatcacacttattccaaaactgaccatatagttggaagtaaaacactcctcagcaaatgtaaaagaacagaaattataacaaactgtctctcagaccacggtgcaatcaaactagaactcaagattaagaaactcactcaaaactgctcaactacatggaaactgaacaacctgctcctgaatcactactgggtacataacgaaatgaaggcagaaataaagatgttctgtgaaaccaacgagaacaaagacacaacataccagaatctttgggacacatttaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaagatcagagcagaactgaaggaaatagagacacaaaaaacccttcaaaaaatcaatgaatccaggagctggttttttgaaaagatcaacaaaattgatagac i nomLeu3.chr9 C 0 I 412 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761058 418 + 3286835 I e mm10.chr5 76397610 605 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e aotNan1.NW_018493494v1 9356461 0 - 11631747 C e cebCap1.NW_016107439v1 6940443 54 - 7304997 I e saiBol1.JH378162 8156218 691 - 15139346 I e calJac3.chr3 52992486 525 - 190850796 I e otoGar3.GL873602 8593787 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C e panTro5.chr4 119594267 5744 - 194502333 I e colAng1.NW_012119221v1 1257319 2216 + 1448899 I e manLeu1.NW_012104388v1 1970965 5570 + 2427316 I e cerAty1.NW_012001307v1 4155433 4415 - 5137665 I e macNem1.NW_012012466v1 13252718 5886 + 26754465 I e rheMac8.chr5 111516827 5577 - 190429646 I e macFas5.chr5 110684949 5596 - 189454096 I a score=166076.000000 s hg38.chr4_KI270787v1_alt 32785 623 + 111943 cgctagcaagactaataaagaagaaaagagagaagaatcaaacagatgcaataaaaaatgataaaggggatatcaccactgatcccacagaaatacaaactaccaccagagaatactataaacacctccacgcaaataaactagaaaatctagaagaaatggataaattcctcaacacatacaccctcccaagactaaaccaggaaaaagttgaatctcttaatagaccaataacaggctctgaaattgaggcaataattaatagcttaccaaccaaaaaaagtccaggaccagacggattcacagccgaattctaccagaggtacaaggaggagttggtaccattccttctgaaactattccaatcaacagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgataccaaaggctggcagagacacaacaaaaaaagaaaattttagaccaatatccctgatgaacatcgaagcaaaaatcctcaataaaatactggcaaactgaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcatccctgggatgtaaggctggttcaacatatgcaaatcaataaacataatc s panPan2.chr4 121011347 623 - 195804263 cgctagcaagactaataaagaagaaaagagagaagaatcaaatagacgcaataaaaaatgataaaggggatatcaccaccgatcccacagaaatacaaactaccatcagagaatactataaacacctctacgcaaatgaactagaaaatctagaagaaatggataaattccttgacacgtacaccctcccaagactaaaccaggaaaaagttgaatctctgaatagaccaataacaggctctgaaattgaggcaataattaatagcttaccaaccaaaaaaagtccaggaccagatggattcacagctgaattctaccagaggtacaaggaggagttgctaccattccttctgaaactattccaatcaacagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgataccaaagccgggcagagacacaacaaaaaaagaaaaattgagaccaatatccctgatgaatatcgatgcaaaaatcctcaataaaatagtggcaaactgaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggtttaacatatacaaatcaataaacataatc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4442491 623 - 17550833 tgctagcaagactaataaagaagaaaagagagaagaatcaaatagacgcaataaaaaatgataaaggggatatcaccaccgatcccacagaaatacaaactaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaatggataaattccttgacacatacaccctcccaagactaaaccaggaaaaagttgaatctctgaatagaccaataacaggctctgaaattgaggcaataattaatagcttaccgaccaaaaacagtccaggaccagatggattcacagcccaattctaccagaggtacaaggaggaactggtaccattccttctgaaactattccaatcaacagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcttgataccaaagccgggcagagacacaacaaaaaaagacaattttagaccaatatccctgatgaatatcgatgcaaaaatcctcaatacaatagtggcaaactgaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggtttaacatatgcaaatcaataaacataatc i gorGor5.CYUI01014963v1 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761058 418 + 3286835 I e mm10.chr5 76397610 605 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e aotNan1.NW_018493494v1 9356461 0 - 11631747 C e cebCap1.NW_016107439v1 6940443 54 - 7304997 I e saiBol1.JH378162 8156218 691 - 15139346 I e calJac3.chr3 52992486 525 - 190850796 I e otoGar3.GL873602 8593787 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C e panTro5.chr4 119594267 5744 - 194502333 I e nomLeu3.chr9 69315246 412 - 118206036 I e colAng1.NW_012119221v1 1257319 2216 + 1448899 I e manLeu1.NW_012104388v1 1970965 5570 + 2427316 I e cerAty1.NW_012001307v1 4155433 4415 - 5137665 I e macNem1.NW_012012466v1 13252718 5886 + 26754465 I e rheMac8.chr5 111516827 5577 - 190429646 I e macFas5.chr5 110684949 5596 - 189454096 I a score=870410.000000 s hg38.chr4_KI270787v1_alt 33408 1656 + 111943 cagcatataaacagaaccaacgacaaaaacaacatgattatctcaatagatgcagaaaaggcctttgacaaaattcaacagcctttcatgctaaaaattctcaataaattaggtattgatgggacatatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatgggtaaaaactggaagcattccctttgaaaactggcacaagacagcgatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcaggcaggagaaggaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccattgtctcagcccaaaatctccttaagctgataggcaacttcagcaaagtctcaggatacaaaatcaatgtacaaaaatcacaagcattcttattcaccaataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaactgacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaagaggatataaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcatgaaaa-ggccatactccccaaggtaatttgtagattcaatgccatccccatcaagctaccaatgacttttttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccacattgccaagtcaatcctaagccaaaaaaacaaagctggagccatcacactacctgacttcaaactatactacatggctacaggaaccaaaatagcatggtactggtaccaaaacagagatatagaccaatggaacagaacagagccctcagaaataatgccacacatctacaaatatctgatctttgacaaacctgagaaaaacaagcaacagggaaaggattccctatttaataaatggtgctgggaaaactggctagccgtatgtagaaagctgaaactggatcccttccttacaccttatacaaaaattaattgaagatggattaaagacttaaatgttagacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacacaggcatgggcaagaacttcatgact-aaacaccaaaagcaatggcaacaaaagccaaaatagacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacaacatgggagaaaatttttgcaatatgctcatctgacacagggctaatatccagaatctacaatgaactcaaacaaatttacaagagaaaaacaaacagccccatcaacaagtgggcgaaggatgtgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctcatcatcactgcccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggagatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggaga s panPan2.chr4 121011970 1652 - 195804263 cagcatataaacagaaccaacgacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgacaaaattcaacagcccttcatgctgaaaattctcaataaattaggtattgatgggacatatctcaaaataataagagctatttatgacaaa-ccaaagcc---atcatactgaatgggaaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaaattctggccagggcaatcaggcaggagaaggaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacacgattgtatatttagaaaaccccattgtctcagcccaaaatctccttaagctggtaggcaacttcagcaaagtctcaggatacaaaatcaatgtacaaaaatcacaagcattcttatacaccaataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaactgacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaataggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaa-ggccacactccccaaggtaatttgtagattcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccacattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaactatactacaaggctacagtaaccaaaatagcatggtactggtaccaaaacagagatatagaccaatggaacagaacagagccctcagaaataatgccacacatctacaaatatctgacctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgtggaaagctgaaactggatcccttccttacaccttatacaaaaattaattcaagatggattaaagacttaaatgttagacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaagaacttcatgact-aaacaccaaaagcaatggcaacaaatgccaaaattgacaaatgggatctaatcaaactaaagagcttctgcacagcaaaagaaactgccatcagagtgaacaggcaacctacagaatgggataaaatttttgcagtatgctcatctgacacagggctaatatccagaatctacaaagaactcaaacaaatttacaagagaaaaacaaacagccccatcaacaagtgggcgaaggatgtgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggagatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggaga i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4443114 1649 - 17550833 cagcatataaacagaaccaatgacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgacaaaattcaacaacccttcatgctaaaaattctcaataaattaggtattgatgggacatatctcaaaataataagagctatttatgacaaacccacagcc---atcatactgaatgggaaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcaggcaggagaaggaaataaagggtatccaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcatctcagcccaaaatctccttaagctggtaggcaacttcagcaaagtctcaggatacaaaatcaatgtacaaaaatcacaagcattcttatacaccaataacagacaaacagagagccaaatcatgaatgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaataggat----acaaatggaagaacattccatgctcatgggtaggaagaatcaatatcatgaaaa-ggccatactccccaaggtaatttgtagattcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccacattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaactctactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagagatatagatcaatggaacagaacagagccctcagaaataatgccacacatctacaaatatctgacctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaacggtgctgggaaaactggctagccatatgtggaaagctgaaactggatcccttccttacaccttatacaaaaattaattcaagatggattagagacttaaatgttagacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaagaacttcatgact-aaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactgctatcagagtgaacaggcaacctacagaatgggagaaaatttttgcaatatgctcatctgacacagggctaatatccagaatctacaaagaactcaaacaaatttacaagaaaaaaacaaacagccccatcaacaagtgggcgaaggatgtgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctcatcatcaccggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggagatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggaga i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69315658 1651 - 118206036 cagcatataaacagaaccaatgacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgacaaaattcaacaacccttcatgctaaaaactctcaataaattaggtactgatgggatgtatctcaaaataataagacgtatttatgaggaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcagacaggagaaggaaataaagggtattcaattgggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatgtagaaaaccccatcgtctcagcccacaatctccttaagctgataaggaacttcatcaaagtctcaggatgcaaaatcaatgtgcaaaaatcacaagccttcttatacaccaataacagataaataaagagtcaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaatttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgcttaacgaaataaaagaggatacaaacaaatggaagaacattccatgctcatgggttggaagaatcaatatcgtgaaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatgattttcttcatagaattggaaaaaactactttaaagttcatatggaaccaaaacagagcccacattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaactatactacaaggcta-------caaaactgcacggtactggtaccaaaacagagacatagaccaatggaacagaacagagccctcagaaataatgccacacatctacaaatatctgatctttgacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttacacaaaaattaattcaagatggattaaagacttacatgttatacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgatgaatgggatctaattaaactgaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacaaaataggagaaaatttttgcaatctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaacaagtgggtgaaggatatgaacagacacttctcaaaagaagacatttatgcagcgaaaagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgtgataccatctcacaccagttagaatggtgatcattgaaaagtcaggaaatgacaggtactggagaggatgtggaga i nomLeu3.chr9 I 412 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761058 418 + 3286835 I e mm10.chr5 76397610 605 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e aotNan1.NW_018493494v1 9356461 0 - 11631747 C e cebCap1.NW_016107439v1 6940443 54 - 7304997 I e saiBol1.JH378162 8156218 691 - 15139346 I e calJac3.chr3 52992486 525 - 190850796 I e otoGar3.GL873602 8593787 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C e panTro5.chr4 119594267 5744 - 194502333 I e colAng1.NW_012119221v1 1257319 2216 + 1448899 I e manLeu1.NW_012104388v1 1970965 5570 + 2427316 I e cerAty1.NW_012001307v1 4155433 4415 - 5137665 I e macNem1.NW_012012466v1 13252718 5886 + 26754465 I e rheMac8.chr5 111516827 5577 - 190429646 I e macFas5.chr5 110684949 5596 - 189454096 I a score=557074.000000 s hg38.chr4_KI270787v1_alt 35064 634 + 111943 aataggaacagttttacactgttggtggaagtgtaaactagttcaaccattgtgtaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcactattcccaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaaggatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcgcaaggacaaaaaaccaaacaccgcatgttcttactcataggtgggaattgaacagtgagaacacatggacacaggaaggggaacatcacacaccggggactgttgtggggtggggggaggggggagggatagcattaggagatatacctaatgt-aaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacttatgtaacaaacctgcacgttgtgcacatgtaccctaaaacttaaagtgtaat----aaaaaaaaa s panTro5.chr4 119600011 635 - 194502333 aataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggactataaatcatgctgctataaagacacaggcacacgtatgtttattgcggcactattcccaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccatacaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcgcaaggacaaaaatccaaacaccgcctgttcttactcatagatgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacaccggggactgttgtagggtggggggaggggggagggatagcattaggagatatacctaatattaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctaaaacttaaagtgtaat----aaaaaaaaa i panTro5.chr4 I 5744 C 0 s panPan2.chr4 121013622 635 - 195804263 aataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggactataaatcatgctgctataaagacacaggcacacgtatgtttattgcggcactattcccaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccatacaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcacaaggacaaaaatccaaacaccgcctgttcttactcatagatgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacaccggggactgttgtagggtggggggaggggggagggatagcattaggagatatacctaatgttaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctaaaacttaaagtgtaat----aaaaaaaaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4444763 638 - 17550833 aataggaacagttttacactgttggtggaagtgtaaactagttcaaccattgtgtaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcagcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccatacaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcgcaaggacaaaaaaccaaacaccgcctgttcttactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacatgggggactgttatggggtgggggaaggggggagggatagcattaggagatatacctaatgt-aaatgactagttaatgggtgcagcacaccaacatggcacatgtatacacatgtaacaaacctgcacgttgtgcacatgtaccctaaaacttaaagtgtaattaaaaaaaaaaaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69317309 638 - 118206036 aataggaacacttttacactattggtgggactgtaagctagttcaaccgttgtggaagtcagtgtggtgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgaatatataaccaaaggattataaatcatgctgctataaagacacatgcacgtgtatgtttattacggcactattcacaatagcaaagacatggaaccaacccgaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaaggatgagttcatgtcctttgtagggacatggatgaaactggaaaccaccattctcagcaaactattgcaaggacaaaaaaccaaacaccacatgttctcactgacaggtggtaattgaacaatgagaacacttggacacaggaaggggaacatcacacaccggggcctgctgtggggtgggggtagtgaggaggaatagcattaggagatatacctaatgt-aaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctaaaacttaaagtgtaataaaaaaagaaaaG i nomLeu3.chr9 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761058 418 + 3286835 I e mm10.chr5 76397610 605 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e aotNan1.NW_018493494v1 9356461 0 - 11631747 C e cebCap1.NW_016107439v1 6940443 54 - 7304997 I e saiBol1.JH378162 8156218 691 - 15139346 I e calJac3.chr3 52992486 525 - 190850796 I e otoGar3.GL873602 8593787 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C e colAng1.NW_012119221v1 1257319 2216 + 1448899 I e manLeu1.NW_012104388v1 1970965 5570 + 2427316 I e cerAty1.NW_012001307v1 4155433 4415 - 5137665 I e macNem1.NW_012012466v1 13252718 5886 + 26754465 I e rheMac8.chr5 111516827 5577 - 190429646 I e macFas5.chr5 110684949 5596 - 189454096 I a score=6440.000000 s hg38.chr4_KI270787v1_alt 35698 5 + 111943 aaGAg s panTro5.chr4 119600646 5 - 194502333 aaGAg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121014257 5 - 195804263 aaGAg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4445401 5 - 17550833 AAGAg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69317947 5 - 118206036 AAGAg i nomLeu3.chr9 C 0 C 0 s aotNan1.NW_018493494v1 9356461 5 - 11631747 aagaa i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761058 418 + 3286835 I e mm10.chr5 76397610 605 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e cebCap1.NW_016107439v1 6940443 54 - 7304997 I e saiBol1.JH378162 8156218 691 - 15139346 I e calJac3.chr3 52992486 525 - 190850796 I e otoGar3.GL873602 8593787 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C e colAng1.NW_012119221v1 1257319 2216 + 1448899 I e manLeu1.NW_012104388v1 1970965 5570 + 2427316 I e cerAty1.NW_012001307v1 4155433 4415 - 5137665 I e macNem1.NW_012012466v1 13252718 5886 + 26754465 I e rheMac8.chr5 111516827 5577 - 190429646 I e macFas5.chr5 110684949 5596 - 189454096 I a score=10515.000000 s hg38.chr4_KI270787v1_alt 35703 6 + 111943 ctttcc s panTro5.chr4 119600651 6 - 194502333 ctttcc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121014262 6 - 195804263 ctttcc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4445406 6 - 17550833 ctttcc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69317952 6 - 118206036 ctttcc i nomLeu3.chr9 C 0 C 0 s aotNan1.NW_018493494v1 9356466 6 - 11631747 ctttcc i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76398215 6 + 151834684 ctctct i mm10.chr5 I 605 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761058 418 + 3286835 I e dasNov3.JH568349 4072603 729 - 5279953 I e cebCap1.NW_016107439v1 6940443 54 - 7304997 I e saiBol1.JH378162 8156218 691 - 15139346 I e calJac3.chr3 52992486 525 - 190850796 I e otoGar3.GL873602 8593787 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C e colAng1.NW_012119221v1 1257319 2216 + 1448899 I e manLeu1.NW_012104388v1 1970965 5570 + 2427316 I e cerAty1.NW_012001307v1 4155433 4415 - 5137665 I e macNem1.NW_012012466v1 13252718 5886 + 26754465 I e rheMac8.chr5 111516827 5577 - 190429646 I e macFas5.chr5 110684949 5596 - 189454096 I a score=98750.000000 s hg38.chr4_KI270787v1_alt 35709 59 + 111943 ctttccactactacttttcctttatcacattttccattttgttgggtggccttggtgtg s panTro5.chr4 119600657 59 - 194502333 ctttccactactacttttcctttatcacattttccattttgttgggtggccttggtgtg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121014268 59 - 195804263 ctttccactactacttttcctttatcacattttccattttgttgggtggccttggtgtg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4445412 59 - 17550833 ctttccactactacttttcctttatcacattttccattttgttgggtggccttggtgtg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69317958 59 - 118206036 ctttccactactacttttcctctatcacattttccatttttttgggtgaccttggtgtg i nomLeu3.chr9 C 0 C 0 s aotNan1.NW_018493494v1 9356472 59 - 11631747 cttcccactactacttttcctctatcacattttccattttgttgggtggccttggcgtg i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8593787 59 + 8790067 ctccccgccactagtttccatccatcatgttttccatcttattgggtaatagtggaatg i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76398221 55 + 151834684 ctctctctgatgactttccctcgtt---acttttcattgt-ttgcatggtgcaggaaag i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761058 418 + 3286835 I e dasNov3.JH568349 4072603 729 - 5279953 I e cebCap1.NW_016107439v1 6940443 54 - 7304997 I e saiBol1.JH378162 8156218 691 - 15139346 I e calJac3.chr3 52992486 525 - 190850796 I e canFam3.chr13 47960863 0 + 63241923 C e colAng1.NW_012119221v1 1257319 2216 + 1448899 I e manLeu1.NW_012104388v1 1970965 5570 + 2427316 I e cerAty1.NW_012001307v1 4155433 4415 - 5137665 I e macNem1.NW_012012466v1 13252718 5886 + 26754465 I e rheMac8.chr5 111516827 5577 - 190429646 I e macFas5.chr5 110684949 5596 - 189454096 I a score=314559.000000 s hg38.chr4_KI270787v1_alt 35768 46 + 111943 accagaggtattttgaagatccaccttaggggaagttgaactggag- s panTro5.chr4 119600716 46 - 194502333 accagaggtattttgaagatccaccttaggggaagttgaactggag- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121014327 46 - 195804263 accagaggtattttgaagatccaccttaggggaagttgaactggag- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4445471 46 - 17550833 accagaggtattttgaagatccaccttaggggaagttgaactggag- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69318017 46 - 118206036 accagaggtattttgaagatccaccttaggggaagttgaactggag- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111522404 46 - 190429646 ACCAGAggtattttgaagacccagcttaggggaagctgaactggag- i rheMac8.chr5 I 5577 C 0 s macFas5.chr5 110690545 46 - 189454096 ACCAGAggtattttgaagacccagcttaggggaagttgaactggag- i macFas5.chr5 I 5596 C 0 s macNem1.NW_012012466v1 13258604 46 + 26754465 ACCAGAggtattttgaagacccagcttaggggaagttgaactggag- i macNem1.NW_012012466v1 I 5886 C 0 s cerAty1.NW_012001307v1 4159848 46 - 5137665 ACCAGAggtattttgaagacccagcttaggagaagttgaactggag- i cerAty1.NW_012001307v1 I 4415 C 0 s chlSab2.chr7 122874679 46 - 135778131 ACCAGAggtattttgaagacccagcttaggggaagttgtactggag- i chlSab2.chr7 N 0 C 0 s manLeu1.NW_012104388v1 1976535 46 + 2427316 ACCAGAggtattttgaagacccagcttaggagaagttgaactggag- i manLeu1.NW_012104388v1 I 5570 C 0 s colAng1.NW_012119221v1 1259535 46 + 1448899 ACCAGAAgtattttgaagacccagcttaggggaagttgaactggag- i colAng1.NW_012119221v1 I 2216 C 0 s aotNan1.NW_018493494v1 9356531 45 - 11631747 accagagctattgtgaaaatccagcttaggggaagttgaactggg-- i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8593846 22 + 8790067 ------------------------gccaggggaaggtgagttggag- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76398276 46 + 151834684 gccagaagtacc-cgaaagtctggcttaagtggaagtggagttcagt i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761058 418 + 3286835 I e dasNov3.JH568349 4072603 729 - 5279953 I e cebCap1.NW_016107439v1 6940443 54 - 7304997 I e saiBol1.JH378162 8156218 691 - 15139346 I e calJac3.chr3 52992486 525 - 190850796 I e canFam3.chr13 47960863 0 + 63241923 C a score=2030537.000000 s hg38.chr4_KI270787v1_alt 35814 232 + 111943 --acattcagcctgaatttagtgggatctattgattcagtcatcagtcaattctctgtgtagttaggttactactggcctcccaggataaaatttcctcgatgaatagtgcaagtgcccactctgggactcatctggtatcataattcaaagattaagggcatgggctatattgtgtaatgaatgtggagacaaacagaactttgaaataaacagagccagatgctagtctatg s panTro5.chr4 119600762 232 - 194502333 --acattcagcctgaatttagtgggatctattgattcagtcatcagtcagttgtctgtgtagttaggttactactggcctcccaggataaaatttcctcgatgaatagtgcaagtgcccaatctgggactcatctggtatcataattcaaagattaagggcatgggctatatagtgtaatgaatgtggagacaaacagagctttgaaataaacagagccagatgctagtctatg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121014373 232 - 195804263 --acattcagcctgaatttagtgggatctattgattcagtcatcagtcagttgtctgtgtagttaggttactactggcctcccaggataaaatttcctcgatgaatagtgcaagtgcccaatctgggactcatctggtatcataattcaaagattaagggcatgggctatattgtgtaatgaatgtggagacaaacagagctttgaaataaacagagccagatgctagtctatg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4445517 232 - 17550833 --acattcagcctgaatttagtgggatctattgattcagtcatcagtcaattctctgtgtagttaggttactactggcctcccaggataaaatttcctcgatgaatagtgcaagtgcccactctgggacttatctggtatcataattcaaagattaagggcatgggctatattgtgtaatgaatgaggagacaaacagagctttgaaataaacagagccagatgctagtctatg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69318063 232 - 118206036 --acattcagcctgaatttagtgggatctattgattcagtcatcagtcaattctctgtatagttaggttactactggcctcccaggataaaatttcctcgatgaatagtccaagtgcccactctgggactcatctggtatcataattcaaagattaagggcatgggctatattgtgtaatgaatgtggagacaaacagagctttgaaataaacagagccagatgctagtctatg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111522450 232 - 190429646 --acacttagcctgaatttagtgggatctattgattcagtcatcagtcaattctctgtagagttaggttactactggcctcccagggtaaaatttcctcagtggatagtccaagtgcccactctgggactcatctggtatcataattcaaagattaagggcatgggctatattgtgtaatgaatgtggagacaaacagagctttgaaataaacagagccagatgctagtctacg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110690591 232 - 189454096 --acacttagcctgaatttagtgggatttattgattcagtcatcagtcaattctctgtagagttaggttactactggcctcccaggataaaatttcctcagtggatagtccaagtgcccactctgggactcatctggtatcataattcaaagattaagggcatgggctatattgtgtaatgaatgtggagacaaacagagctttgaaataaacagagccagatgctagtctacg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13258650 232 + 26754465 --acacttagcctgaatttagtgggatctattgattcagtcatcagtcaattctctgtagagttaggttactactggcctcccaggataaaatttcctcagtggatagtccaagtgcccactctgggactcatctggtatcataattcaaagattaagggcatgggctatattgtgtaatgaatgtggagacaaacagagctttgaaataaacagagccagatgctagtctacg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4159894 232 - 5137665 --acacttagcctgaatttagtgggatctattgattcagtcatcagtcaattctctgtagagttaggttactactggcatcccaggataaaatttcctcaatgggtagtccaagtgcccactctgggactcatctggtatcataattcaaagattaagggcgtgggctatattgtgtaatgaatgtggagacaaacagagctttgaaataaacagagccagatgctagtctacg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122874725 232 - 135778131 --acacttagcctgaatttagtgggatctattgattcagtcatcagtcaattctctgtgcagttaggttactactggcctcccaggataaaatttccttgatggatagtccaagtgcccactctgggactcatctggtatcataattcaaagattaagggcatgggctatattgtgtaatgaatgtggagacaaacagagttttgaaataaacagagccagatgctagtctacg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1976581 232 + 2427316 --acacttagcctgaatttagtgggatctattgattcagtcatcagtcaattctctgtagagttaggttactactggccttccaggataaaatttcctcaatggatagtccaagtgcccactctgggactcatctggtatcataattcaaagattaagagcatgggctatattgtgtaattaatgtggagacaaacagagctttgaaataaacagagccagatgctagtctacg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1259581 232 + 1448899 --acacttagcctgaatttagtgggatctattgattcagtcatcagtcaattctctgtacagttaagttactactggcctcccaggataaaatttcctcgatggatagtccaagtgcccactctggtactcatctggtatcataattcaaagattaagggcataggctacattgtgtaatgaatgtggagacaaacagagctttgaaataagcagagccagatgctagtctaca i colAng1.NW_012119221v1 C 0 C 0 s cebCap1.NW_016107439v1 6940497 232 - 7304997 --acatttagcttgaatttagtgggatctattgatgcagtcatcagtcaattctctgtatagttaggttacttctcgcctcccaggataaaatttcctccatcaataatccaagtgcccactctgtgatttatctgctatcacaattcaaagatgaagggcatgggctatattgtgTAATAAATATATAgacaaacagtgctttgaaataagcagagccagatgctagtctatg i cebCap1.NW_016107439v1 I 54 C 0 s aotNan1.NW_018493494v1 9356576 232 - 11631747 --acattaagcttgaatttagtgggatctattgatgcagtcatcagtcaattctctgtattgttaggttacttctggcctcccaggataaaatttcctccatgaataatccaagtgcccactctgtgatttatctgctatcataattcaaagatgaaggtcatgggctatactgtgtaataaatgtagagacaaacagcgctttgaaataagcagagccagatgctagtctatg i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8593868 220 + 8790067 --acgtttaacttggagttagtggggtgccctgacacagttatcactcagttccctgcatagagaggttactgctggcctcccagcataaaacttcttccacggataggccaagtgcccactctggaacttgtgtgggatcataacacagagatgaaaggcattggccatattatattataaatgtgGAGACAAACAGAGCTTT------------gtcagacactagtccatg i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76398322 188 + 151834684 acatacttggcccagtcacagtgggatatcctagcgagggcctccatcaccgcgccgtggacttaggtaattgctagccTCACAGGTTGAAAT----------------CCAACTGCCTGCACTGGAACTCAGCC---------ATTCAG------------------CTGTCACATGACGGATGTGGAGACAAACAGGG---TGAGATGCTCAGAACCAGGAGCTTGCCAACA i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761058 418 + 3286835 I e dasNov3.JH568349 4072603 729 - 5279953 I e saiBol1.JH378162 8156218 691 - 15139346 I e calJac3.chr3 52992486 525 - 190850796 I e canFam3.chr13 47960863 0 + 63241923 C a score=261848.000000 s hg38.chr4_KI270787v1_alt 36046 27 + 111943 aagaattctttcaattatcagataggt s panTro5.chr4 119600994 27 - 194502333 aagaattctttcaattatcagataggt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121014605 27 - 195804263 aagaattctttcaattatcagataggt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4445749 27 - 17550833 aagaattatttcagttatcagataggt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69318295 27 - 118206036 aagaattctttaaattatcagatacgt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111522682 27 - 190429646 aagaattctttcaattatcggataggt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110690823 27 - 189454096 aagaattctttcaattatcggataggt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13258882 27 + 26754465 aagaattctttcaattatcggataggt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4160126 27 - 5137665 aagaattctttcaattatcagataggt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122874957 27 - 135778131 aagaattctttcaattatcagataggt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1976813 27 + 2427316 aagaattctttcaattatcagataggt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1259813 27 + 1448899 aagaattctttcaattatcagataggt i colAng1.NW_012119221v1 C 0 I 1 s calJac3.chr3 52993011 27 - 190850796 AGGaatcctttcaattatcagacaggt i calJac3.chr3 I 525 I 1 s cebCap1.NW_016107439v1 6940729 27 - 7304997 aagaatcctttcaattatcagacaggt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9356808 27 - 11631747 aagaattctttcaattatcagacaggt i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8594088 25 + 8790067 cagaattc--tcaattatcagacatgt i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76398510 15 + 151834684 ------------AGTTTTCAGATGGAG i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761058 418 + 3286835 I e dasNov3.JH568349 4072603 729 - 5279953 I e saiBol1.JH378162 8156218 691 - 15139346 I e canFam3.chr13 47960863 0 + 63241923 C a score=2596999.000000 s hg38.chr4_KI270787v1_alt 36073 245 + 111943 ---aaaatcg-taagttgaagattttatctcattt-tctgctattcaaaatggaagttctattttgtcagagacatgcttgatattgcaatgtattcaaatgtaaacacattgta--ttttttaaagtaggaatcctaaaata--aaaatgttcagaattcctatgaatggagggtacaaatttacagtgacactacaaacagtgtttttgtaagcaaacttggatatctgtgatctcaacatatctgatcatc s panTro5.chr4 119601021 245 - 194502333 ---aaaatcg-taagttgaagattttatctcattt-tctgctattcaaaatggaagttctattttgtcagagacatgcttgatattgcaatgtattcaaatgtaaacacattgta--ttttttaaagtaggaatcctaaaata--aaaatgttcagaattcctatgaatggagggtacaaatttacagtgacactacaaacagtgtttttgtaagcaaacttggatatctgtgatctcaacatatctgatcatc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121014632 245 - 195804263 ---aaaatcg-taagttgaagattttatctcattt-tctgctattcaaaatggaagttctattttgtcagagacatgcttgatattgcaatgtattcaaatgtaaacacattgta--ttttttaaagtaggaatcctaaaata--aaaatgttcagaattcctatgaatggagggtacaaatttacagtgacactacaaacagtgtttttgtaagcaaacttggatatctgtgatctcaacatatctgatcatc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4445776 245 - 17550833 ---aaaatcg-taagttgaagattttatctcattt-tctgctattcaaaatggaagttctattttgtcagagacatgcttgatattgcaatgtattcaaatgtaaacacattgta--ttttttaaagtaggaatcctaaaata--aaaatgttcagaattcctatgaatggagggtacaaatttacagtgacactacaaacagtgtttttgtaagcaaacttggatatctgtgatctcaacatatctgatcatc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69318322 245 - 118206036 ---aaaatcc-taagttgaagatttgatctcattt-tctactattcaaaatggaatttctgttttgtcagagacaggcttgatattgcaatgtattcaaatgtaaacactttgta--tttttttaagtaggaatcctaaaata--aaaatgttcagaattcctatgaacggagggtacaaatttacagtgacactacaaacagtgtttctgtaagcaaacttggatacctatgatttcaacatatctgatcata i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111522709 246 - 190429646 ---aaaatcg-taagttgaagatttgatctcattt-tctactattcaaaatggaatttctattttgtcagagacatgcttgatattgcaatgtattaaaatgtaaacacatcgtat-tttttttaagttggaatcctaaaata--aaaatgttcagaattcctatgaatggagagtacaaatttacagtgacactacaaacagtgtttctgtaagcaaacttggatatccatgatctcaacatatccgctcata i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110690850 246 - 189454096 ---aaaatcg-taagttgaagatttgatctcattt-tctactattcaaaatggaatttctattttgtcagagacatgcttgatattgcaatgtattaaaatgtaaacacatcatat-tttttttaagtaggaatcctaaaata--aaaatgttcagaattcctatgaatggagagtacaaatttacagtgacactacaaacagtgtttctgtaagcaaacttggatatccatgatctcaacatatccgctcata i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13258909 246 + 26754465 ---aaaatcg-taagttgaagatttgatctcattt-tctactattcaaaatggaatttctattttgtcagagacatgcttgatattgcaatgtattaaaatgtaaacacatcgtat-tttttttaagtaggaatactaaaata--aaaatgttcagaattcctatgaatggagagtacaaatttacagtgacactacaaacagtgtttctgtaagcaaacttggatatccatgatctcaacatatccgctcata i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4160153 245 - 5137665 ---aaaatcg-taagttgaagatttgatctcattt-tctactattcaaaatggaatttctattttgtcagagacatgcttgatattgcaatgtattaaaatgtaaacacatcata--tttttttaagtaggaatcctaaaata--aaaatgttcagaattcctatgaatggagagtacaaatttacagtgacactacaaacagtgtttctgtaagcaaacttggatatccatgatctcaacatatccgctcata i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122874984 246 - 135778131 ---aaaatcg-taagttgaagatttgatctcattt-tctactattcaaaatggaatttctattttgtcagagacatgcttgatattgcaatgtattcaaatgtaaacacattgtat-tttttttaagtaggaatcctaaaata--aaaatgttcagaattcctatgaatggagggtacaaatttacagtgacactacaaacagtgtttctgtaagcaaacttggatatccatgatctcaacatatccactcata i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1976840 246 + 2427316 ---aaaatcg-taagttgaagatttgatctcattt-tctactattcaaaatggaatttctattttgtcagagacatgcttgatattgcaatgtattaaaatgtaaacacatcgtat-tttttttaagtaggaatcctaaaata--aaaatgttcagaattcctatgaatggagagtacaaatttacagtgacactacaaatagtgtttctgtaagcaaacttggatatccatgatctcaacatatccgctcata i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1259841 246 + 1448899 ---aaaatcg-caagttgaagatttgatctcattt-tctactattcaaaatggaatttctattttgtcagagacatgcttgatattgcaatgtattcaaatgtaaacacatcgtat-tttttttaagtaggaatcctaaaata--aaaatgttcagaattcctatgaatggagggtacaaatttacagtgacactacaaatagcgtttctgtaagcaaacttggatatccatgatctcaacatatctgctcata i colAng1.NW_012119221v1 I 1 C 0 s calJac3.chr3 52993039 244 - 190850796 ---aaaattgctaaggtgaaggtttcatctcatta-tctactagtcaaaatggaattttta-tctgtcagagacatgcttgatattgtgatgtatgcaaatgtaaacacattgta---ttttttaagtgggaatcctaaaata--aaaatgttcagaatttctatgaacggagggtataaatttgcagtgaccctataaacagtgttcctgtaagcaaacttgaatatctgtggtgcaggcatatccgatcaca i calJac3.chr3 I 1 C 0 s saiBol1.JH378162 8156909 244 - 15139346 ---aaaatt--taagttgaagatttcatctcatta-tctactattcaaaatggaatttctattttgtcagagacatgcttgatattgcaacgtatacaaatgaaaacacattgta--tttttttaagtgggaatcctaaaata--aaaatgttcagaatttctatgaacggagggtataaatttgcagtgaccctattaagagtgtacctgtaagcaaacttgaatatctatggtcccggcatatccgatcacg i saiBol1.JH378162 I 691 C 0 s cebCap1.NW_016107439v1 6940756 246 - 7304997 ---aaaattgttaagttgaagatttcatctcatta-tctactattcaaaatggaatttctattttgtcagggacatgcttgatattacaatgtatacaaatgtaaacacattgta--tttttttaagtgggaatcctaaaata--aaaatgttcagaatttctatgaacagagggtataaatttgcagtgaccctataaacagtgttcctgtaagcaaacttgaatatctatggtgccggcatatccgatcaca i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9356835 245 - 11631747 ---aaaattg-taagttgaagatttcatctcatta-tctactattcaaaatggaatttctattttgtcagagacatgcttgatattgcaacatacacatatgtaaacacattgta--tttttttaagtgggaatcctaaaata--aaaatgttcagaatttctatgaacggagggtataaatttgcagtgaccccataaacagtgttcctgtaagcaaacttgaatatctatggtcccagcatatccgatcaca i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8594113 227 + 8790067 ---aaaattg-taagttgaagatctgatctcattg-tgtaccattcaaaataaaatttctattgtatcagagacaggcttgatattgcaatgcgcacaaatataaacatgtcatatgttctttaaaatgggaattctaaaatg--gaatttttcagaattcatatgaatgtagggcatagatttgcagcaaggttac------------------caaacttgagtttctgtgcacccagcacgtgagaggc-- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76398525 196 + 151834684 ACATAGACTG-TAAGCTGAAGATTTGGTTTCATTTGGCTCCCAGACCAGACAGAATTGCTACTTGGGTA-AAACATGTATGATGTTTC-----ATGCAAATAGGAACACATTGTA---TTTTTTAAGTGATAATCCTAAAGTGTTAAAATATTCATAATTACTATGAG-------------------------------ATAATATCTATG----------TGTATATCTGTG-------CATATACAAACATA i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761058 418 + 3286835 I e dasNov3.JH568349 4072603 729 - 5279953 I e canFam3.chr13 47960863 0 + 63241923 C a score=171374.000000 s hg38.chr4_KI270787v1_alt 36318 13 + 111943 tcttggcatatct s panTro5.chr4 119601266 13 - 194502333 tcttggcatatct i panTro5.chr4 C 0 C 0 s panPan2.chr4 121014877 13 - 195804263 tcttggcatatct i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446021 13 - 17550833 tcttggcatatct i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69318567 13 - 118206036 tcttggcatatct i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111522955 13 - 190429646 ccttggcatatct i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110691096 13 - 189454096 ccttggcatatct i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13259155 13 + 26754465 ccttggcatatct i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4160398 13 - 5137665 ccttggcatatct i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122875230 13 - 135778131 ccttggcatatct i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1977086 13 + 2427316 ccttggcatatct i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1260087 13 + 1448899 ccttggcatatct i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52993283 13 - 190850796 tgctggcatatct i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8157153 13 - 15139346 tcttggcatatct i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6941002 13 - 7304997 tcttggcatatct i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9357080 13 - 11631747 tcttggcatatct i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1761476 13 + 3286835 tcttggcatatct i micMur3.chrUn_NW_017968520v1 I 418 C 0 s otoGar3.GL873602 8594340 13 + 8790067 tcttgggagatct i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76398721 7 + 151834684 ------TATATCT i mm10.chr5 C 0 I 169 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e dasNov3.JH568349 4072603 729 - 5279953 I e canFam3.chr13 47960863 0 + 63241923 C a score=2527447.000000 s hg38.chr4_KI270787v1_alt 36331 237 + 111943 gacacatcttgcagtgtggaaattccagagaaaatgggttccaaaattccttttcttaaaaagtgatctctaaattatataaggttca-tgttccacaaaacctggatctgtccc-----------------tAGATTATCCTGAGCCAGTgaatcataaaatcataacatcttaagagatggtatagactttaaataccatgtagtcTGGTGGGG--TTTTTT----T--CATATATTTTC-TTTTAAGTTTCAAGATCCttt------ s panTro5.chr4 119601279 237 - 194502333 gacacatcttgcagtgtggaaattccagagaaaatgggttccaaaattccttttcttaaaaagtgatctctaaattatataaggttca-tgttccacaaaacctggatctgtccc-----------------tAGATTATCCTGAGCCAGTgaatcataaaatcataacatcttaagagatggtatagactttaaataccatgtagtcTGGTGGGG--TTTTTT----T--CATATATTTTC-TTTTAAGTTTCAAGATCCttt------ i panTro5.chr4 C 0 C 0 s panPan2.chr4 121014890 237 - 195804263 gacacatcttgcagtgtggaaattccagagaaaatgggttccaaaattccttttcttaaaaagtgatctctaaattatataaggttca-tgttccacaaaacctggatctgtccc-----------------tAGATTATCCTGAGCCAGTgaatcataaaatcataacatcttaagagatggtatagactttaaataccatgtagtcTGGTGGGG--TTTTTT----T--CATATATTTTC-TTTTAAGTTTCAAGATCCTTT------ i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446034 237 - 17550833 gacacatcttgcagtgcggaaattccagagaaaatgggttccaaaattctttttcttaaaaagtgatctctaaattatataaagttca-tgttccacaaaacctggatctgtccc-----------------tAGATTATCCTGAGCCAGTgaatcataaaatcataacatcttaagagatggtatagactttaaataccatgtagtcTGGTGGGG--TTTTTT----T--CATATATTTTC-TTTTAAGTTTCAAGATCCttt------ i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69318580 235 - 118206036 gacacatattgcagtatggcagttctagagaaaat-ggttccaaaattctttttcttaaaaagtgatctgtaaattatataaggttct-tgttccacaaaacctggatctgtccc-----------------tAGATTGTCCTGACCCAGTgaatcagaaaatcataacatcttaa-agatggtatagactttaaataccatgtagtcTGGTGGGG--TTTTTT----T--CATATATTGTC-TTTTAAGCTTCAAGATCCTTT------ i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111522968 229 - 190429646 g--acatcttgcggtgtgacaattccatagaaaatgggttccaaaattctttttcttaaaaagtgatctctaaattatataaggttca-tgttccacaaaacctgattctgtcgc-----------------tAGATTATCCTGACCCAGTgaatcataaaatcataacatcttag-agatggtatagactttaaatactgtgtagtcTGGTGGGA--TTTTTT----T-TCATATATTTTC-TTTTAAGTTTCAAGA------------ i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110691109 229 - 189454096 g--acatcttgcggtgtgacaattccatagaaaatgggttccaaaattctttttcttaaaaagtgatctctaaattatataaggttca-tgttccacaaaacctgattctgtccc-----------------tAGATTATCCTGACCCAGTgaatcataaaatcataacatcttag-agatggtatagactttaaatactgtgtagtcTGGTGGGA--TTTTTT----T-TCATATATTTTC-TTTTAAGTTTCAAGA------------ i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13259168 229 + 26754465 g--acatcttgtggtgtgacaattccatagaaaatgggttccaaaattctttttcttaaaaagtgatctctaaattatataaggttca-tgttccacaaaacctgattctgtccc-----------------tAGATTATCCTGACCCAGTgaatcataaaatcataacatcttag-agatggtatagactttaaatactgtgtagtcTGGTGGGA--TTTTTT----T-TCATGTATTTTC-TTTTAAGTTTCAAGA------------ i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4160411 231 - 5137665 gacacatcttgcggtgtgacaattccatagaaaatgggttccaaaattctttttcttagaaagtgatctctaaattatataaggttca-tgttccacaaaacctgaatctgtccc-----------------tAGATTATCCTGACCCAGTgaatcataaaatcataacatcttag-agatggtatagactttaaatactgtgtagtcTGGTGGGA--tttttt----t-tcatatattttc-ttttaagtttcaaga------------ i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122875243 232 - 135778131 gacacatcttgcagtgtgacaattccataggaaatgggttccaaaattctttttcttaaaaagtgatctctaaattatataaggttca-tgttccacaaaacctgaatctgtccc-----------------tAGATTATCCTGACCCAGTgaatcataaaatcataacatcttag-aaatggtatagactttaaataccatgtagtcTGGTGGGG--TTTTTT----TCCCGTATATTTTC-TTTTAAGTTTCAAGG------------ i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1977099 231 + 2427316 gacacatcttgCAGTGTGACAAGTGCATAGAAAATGGGTTCCAAAattctttttcttaaaaaatgatctctaaattatataaggttca-tgttccacaaaacctgaatctgtccc-----------------tAGATTATCCTGACCCAGTgaatcataaaatcataacatcttag-agatggtatagactttaaatactgtgtagtcTGGTGGGA--tttttt----t-tcatatattttc-ttttaagtttcaaga------------ i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1260100 226 + 1448899 gacacatcttgcagtgtgacaattccatagaaaatgggttccaaaattctttttcttaaaaagtgatctctaaattatataaggttca-tgtttcacaaaacctgaatctgtccc-----------------tAGATTATCCTGACCCAGTgaatcacaaaatcataacatcttag-agatggtatagactttaaataccatgtagtctaGTGGGG--TTTTTT----T-TCATATA------TTTTAAGTTTCAAGA------------ i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52993296 233 - 190850796 gacacatcttgcagtgtggcaattccagaggaaatgggttccaaaattctttttcttaaaaagtgatcactaaattatataacatttg-tgctctgcaaaacctggatctgtccc-----------------tAGATTATCCTGACTCAGTgagttataaaatcataacatcttag-agatggtatagactttaaatacaatgtagtcTGGTGGAGGTTTTTTT----T--CACATATTTTCTTTTTAAGTTACAAGA------------ i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8157166 231 - 15139346 gacacatcttgcagtgtggcaattccagaggaaatgggttccaaaattctttttcttaaaaagtgatcactaaattatgtaaggtttg-tgctccgcaaaacctggatctgtccc-----------------tAGATTATCCTGACCCAGTgagttataaaatcataacatcttag-agatgttatagactttaaataccatgtagtcTGGTGGAG--TTTTTT----T--CACATATTTTCTTTTTAAGTTACAAGA------------ i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6941015 231 - 7304997 gacacatcttgcagtgtggcaattccagaggaaatgggttccaaaattctttttcttaaaaagtgatcactaaattatataaggtttg-tgctccacaaaacctggatctgtccc-----------------tAGATTATCCTGACCCAGTgagttataaaatcataacatcttag-agatggtatagactttaaataccatgtagtcTGATGGAG--TTTTTT----T--CACATATTTTCTTTTTAAGTTACAAGA------------ i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9357093 231 - 11631747 gacacatcttgcagtgtggcaattccagaggaaatgggttccaaaattctttttcttaaaaagtgatcactaaattatataaggtttg-tgctccgcaaaacctggatctgtccc-----------------tAGATTATCCTGACCCAGTgagttataaaatcataacatcttag-agatggtatagactttaaataccatgtagtcTGGTGGAG--TTTTTT----T--CACATATTTTCTTTTTAAGTTACAAGA------------ i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1761489 253 + 3286835 gacacatcttgtagtatggcaattccagatgaaatggctggaaaaattctttttcttaaaaatgtatcactacataatataagcttca-ggtcccacaaaacctggatctgtccctAAAAATCAATTCTGCATAGATTATCCTCACCCAATgaatcataaaatcataacatcttag-aaatgataaagactttaaatatcacgtagtcTGGAGCAT--ATTTTT----T--CACATATTTTC-TTTGAAGTCTCAAGA------TCCTTT i micMur3.chrUn_NW_017968520v1 C 0 I 26 s otoGar3.GL873602 8594353 238 + 8790067 aacaccttttgcagtttggtgattccagatgaaacggctggcaaagttCTTTTCCTTAAAAATATATCACTAAACAATATAGCCTTCCTGGTCCCACGAACCCTGAAACTGTCCTTAAAGAGCAATTCTGCTTAGATTATCTTCACCTAGTAAGTCACAAAGCCCTAACGTGTTAG------------------ACTACCACGTAGTCTGGTGGGG--ATTTTTCCCCC--CACATATTTTC-TTTTAAGGTTCAAGA------CTC--- i otoGar3.GL873602 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e mm10.chr5 76398728 169 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e canFam3.chr13 47960863 0 + 63241923 C a score=11013.000000 s hg38.chr4_KI270787v1_alt 36568 9 + 111943 ctttttttt s panTro5.chr4 119601516 9 - 194502333 ctttttttt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015127 9 - 195804263 CTTTTTTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446271 9 - 17550833 ttttttttt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69318815 9 - 118206036 CTTTTTTTT i nomLeu3.chr9 C 0 I 429 s rheMac8.chr5 111523197 3 - 190429646 ------TTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110691338 3 - 189454096 ------TTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13259397 3 + 26754465 ------TTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4160642 7 - 5137665 --ttttttt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122875475 3 - 135778131 ------ttt i chlSab2.chr7 C 0 I 18 s manLeu1.NW_012104388v1 1977330 3 + 2427316 ------ttt i manLeu1.NW_012104388v1 C 0 I 2 s colAng1.NW_012119221v1 1260326 3 + 1448899 ------TTT i colAng1.NW_012119221v1 C 0 I 3 s calJac3.chr3 52993529 5 - 190850796 ----CTCTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8157397 6 - 15139346 ---TCCTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6941246 5 - 7304997 ----TCCTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9357324 5 - 11631747 ----TCCTT i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761742 26 + 3286835 I e mm10.chr5 76398728 169 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e otoGar3.GL873602 8594591 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C a score=465427.000000 s hg38.chr4_KI270787v1_alt 36577 51 + 111943 tttttttttt-----CAAATAAAGGCCTATGTTAGTTTCTATAGCACTTCCCAGGA--- s panTro5.chr4 119601525 56 - 194502333 ttttttttttttttCCAAATAAAGGCCTGTGTTAGTTTCTATAGCACTTCCCAGGA--- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015136 49 - 195804263 TTTTTTCC-------CAAATAAAGGCCTATGTTAGTTTCTATAGCACTTCCCAGGA--- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446280 50 - 17550833 ttttttttt------CAAATAAAGGCCTATGTTAGTTTCTATGGCACTTCCCAGGA--- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69319253 51 - 118206036 tttgctattg-----tgaataAAGGCCTATGTTAGTTTCTATGGCACTTCCCAGGA--- i nomLeu3.chr9 I 429 C 0 s rheMac8.chr5 111523200 51 - 190429646 TTTTTTTTTT-----CATATAAAGGCCTATGTTAGTTTCTATTACACTTCCCAGGA--- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110691341 51 - 189454096 TTTTTTTTTT-----CATATAAAGGCCTATGTTAGTTTCTATTACACTTCCCAGGA--- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13259400 51 + 26754465 TTTTTTTTTT-----TATATAAAGGCCTATGTTAGTTTCTATTACACTTCCCAGGA--- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4160649 51 - 5137665 tttttttttt-----CAAATAAAGGCCTATGTTAGTTTCTATTACACTTCCCAGGA--- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122875496 51 - 135778131 tttttttttt-----CAAATAAAGGCCTATGTTAGTTTCTATTCCACTTCCCAGGA--- i chlSab2.chr7 I 18 C 0 s manLeu1.NW_012104388v1 1977335 51 + 2427316 tttttttttt-----CAAATAAAGGCCTATGTTAGTTTCTATTACACTTCCCAGGA--- i manLeu1.NW_012104388v1 I 2 C 0 s colAng1.NW_012119221v1 1260332 51 + 1448899 TTTTTTTTTT-----CAAATAAAGGCCTATGTTAGTTTCTATTGCACTTCCCAGGA--- i colAng1.NW_012119221v1 I 3 C 0 s calJac3.chr3 52993534 51 - 190850796 TTTTTTTCTT-----CAAATAAAGGCCTATGTTAGTTTCTATTGcacttcccagga--- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8157403 51 - 15139346 TTTTTTTCTT-----TAAATAAAGGCCTATGTTAGTTTCTATTGcacttcccagga--- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6941251 51 - 7304997 TTTTTATCTT-----CAAATAAAGGCCTATGTTAGTTTCTATTGcacttcccagga--- i cebCap1.NW_016107439v1 C 0 I 15 s aotNan1.NW_018493494v1 9357329 50 - 11631747 TTTTT-TCTT-----CAAATAAAGACCTATGTTAGTTTCTATTGCACTTCCTGGGA--- i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8594591 28 + 8790067 ----TTTTTA-----TAAATGAAAG----------------------TTCACATGAAGA i otoGar3.GL873602 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761742 26 + 3286835 I e mm10.chr5 76398728 169 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e canFam3.chr13 47960863 0 + 63241923 C a score=5118.000000 s hg38.chr4_KI270787v1_alt 36628 1 + 111943 G s panTro5.chr4 119601581 1 - 194502333 G i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015185 1 - 195804263 G i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446330 1 - 17550833 G i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69319304 1 - 118206036 A i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111523251 1 - 190429646 A i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110691392 1 - 189454096 A i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13259451 1 + 26754465 A i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4160700 1 - 5137665 A i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122875547 1 - 135778131 A i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1977386 1 + 2427316 A i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1260383 1 + 1448899 A i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52993585 1 - 190850796 a i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8157454 1 - 15139346 a i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9357379 1 - 11631747 A i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8594619 1 + 8790067 A i otoGar3.GL873602 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761742 26 + 3286835 I e mm10.chr5 76398728 169 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e canFam3.chr13 47960863 0 + 63241923 C a score=20447.000000 s hg38.chr4_KI270787v1_alt 36629 2 + 111943 AT s panTro5.chr4 119601582 2 - 194502333 GT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015186 2 - 195804263 GT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446331 2 - 17550833 GT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69319305 2 - 118206036 GT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111523252 2 - 190429646 GT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110691393 2 - 189454096 GT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13259452 2 + 26754465 GT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4160701 2 - 5137665 GT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122875548 2 - 135778131 GT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1977387 2 + 2427316 GT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1260384 2 + 1448899 GT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52993586 2 - 190850796 gt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8157455 2 - 15139346 gt i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9357380 2 - 11631747 GT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1761768 2 + 3286835 AT i micMur3.chrUn_NW_017968520v1 I 26 C 0 s otoGar3.GL873602 8594620 2 + 8790067 AT i otoGar3.GL873602 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e mm10.chr5 76398728 169 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e canFam3.chr13 47960863 0 + 63241923 C a score=353354.000000 s hg38.chr4_KI270787v1_alt 36631 51 + 111943 GCAATAGAAAGTCTTAGTAGTTGATATTA-T--------------------GAAAAAAGTAGAAAATA--ATAA s panTro5.chr4 119601584 51 - 194502333 GCAATAGAAAGTCTTAGTAGTTGACATTA-T--------------------GAAAAAAGTAGAAAATA--ATAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015188 51 - 195804263 GCAATAGAAAGTCTTAGTAGTTGACATTA-T--------------------GAAAAAAGTAGAAAATA--ATAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446333 53 - 17550833 GCAATAGAAAGTCTTAGTAGTTGATATTA-T--------------------GAAAAAAGTAGAAAATAATATAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69319307 45 - 118206036 GCAATAGAA------AGTAGTTGATATTA-T--------------------GAAAAAAGTAGAAAATA--ATAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111523254 52 - 190429646 GCAATAGAAAGTCTTAGTAGTTGATGTTATT--------------------AAAAAAAGTAGAAAATA--ATAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110691395 52 - 189454096 GCAATAGAAAGTCTTAGTAGTTGATGTTATT--------------------AAAAAAAGTAGAAAATA--ATAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13259454 52 + 26754465 GCAATAGAAAGTCTTAGTAGTTGATGTTATT--------------------TAAAAAAGTAGAAAATA--ATAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4160703 52 - 5137665 GCAATAGAAAGTCTTAGTAGTTGATGTTATT--------------------TAAAAAAGTAGAAAATA--ATAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122875550 51 - 135778131 GCAGTAGAAAGTATTAGTAGTTGATGTTA-T--------------------GAAAAAAGTAGAAAATA--ATAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1977389 52 + 2427316 GCAATAGAAAGTCTTAGTAGTTGATGTTATT--------------------TAAAAAAGTAGAAAATA--ATAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1260386 51 + 1448899 GCAATAGAAAGTCTTAGTAGTTGATGTTA-T--------------------GAAAAAAGTAGAAAATA--ATAA i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9357382 41 - 11631747 ACAGTAGAA----------GTTGATATTA-T--------------------GAAAAAAGTAGAGAATA--ATAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1761770 51 + 3286835 GCAGTAGAAAGTCTTAGTGGTTGATGTTA-T--------------------GAGAAAAGTGTAGAATA--ATAA i micMur3.chrUn_NW_017968520v1 C 0 I 1417 s otoGar3.GL873602 8594622 71 + 8790067 GTAGTAGAAAATCCTAGCGGTTGATTCTG-TGTAGAGAATAATAAGTGATAGATAAAAGTAAAGCATA--AGAA i otoGar3.GL873602 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e mm10.chr5 76398728 169 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e canFam3.chr13 47960863 0 + 63241923 C a score=50506.000000 s hg38.chr4_KI270787v1_alt 36682 7 + 111943 -----ACCCTGG s panTro5.chr4 119601635 7 - 194502333 -----ACCCTGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015239 7 - 195804263 -----ACCCTGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446386 7 - 17550833 -----ACCCTGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69319352 7 - 118206036 -----ACTCTGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111523306 7 - 190429646 -----ACTCTGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110691447 7 - 189454096 -----ACTCTGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13259506 7 + 26754465 -----ACTCTGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4160755 7 - 5137665 -----ACTCTGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122875601 7 - 135778131 -----ACTCTGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1977441 7 + 2427316 -----ACTCTGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1260437 7 + 1448899 -----ACTCTGG i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9357423 7 - 11631747 -----ACTCTGG i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8594693 12 + 8790067 ACAACACACTGA i otoGar3.GL873602 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e mm10.chr5 76398728 169 + 151834684 I e dasNov3.JH568349 4072603 729 - 5279953 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e canFam3.chr13 47960863 0 + 63241923 C a score=17297.000000 s hg38.chr4_KI270787v1_alt 36689 4 + 111943 AGTT------------------ s panTro5.chr4 119601642 4 - 194502333 AGTT------------------ i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015246 4 - 195804263 AGTT------------------ i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446393 4 - 17550833 AGTT------------------ i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69319359 4 - 118206036 AGTT------------------ i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111523313 4 - 190429646 AGTT------------------ i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110691454 4 - 189454096 AGTT------------------ i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13259513 4 + 26754465 AGTT------------------ i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4160762 4 - 5137665 AGTT------------------ i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122875608 4 - 135778131 AGTT------------------ i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1977448 4 + 2427316 AGTT------------------ i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1260444 4 + 1448899 AGTT------------------ i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9357430 4 - 11631747 AGTT------------------ i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8594705 22 + 8790067 ACTGAATCAGCCTGAACACCTA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76398897 4 + 151834684 attt------------------ i mm10.chr5 I 169 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e dasNov3.JH568349 4072603 729 - 5279953 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e canFam3.chr13 47960863 0 + 63241923 C a score=867938.000000 s hg38.chr4_KI270787v1_alt 36693 126 + 111943 ATATATATAAGATGTATACTTGTTTCTA--TTTA---A--TA-AGAGAAGAACATATGCAGAGAAC--AAGGA-------------------CACCAAATAGTTCTAG---AAAAAAAAATAAGAATTGTACCAAAAT-------------------AAAGAAA-------GGATTGTCTAGCA s panTro5.chr4 119601646 126 - 194502333 ATATATATAAGATGTATACTTGTTTCTA--TTTA---A--TA-AGAGAAGAACATATGCAGAGAAC--AAGTA-------------------CACCAAATAGTTCTAG---AAAAAAAAATAAGAATTGTACCAAAAT-------------------AAAGAAA-------GGATTGTCTAGCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015250 126 - 195804263 ATATATATAAGATGTATACTTGTTTCTA--TTTA---A--TA-AGAGAAGAACATATGCAGAGAAC--AAGTA-------------------CACCAAATAGTTCTAG---AAAAAAAAATAAGAATTGTACCAAAAT-------------------AAAGAAA-------GGATTGTCTAGCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446397 126 - 17550833 ATATATATAAGATGTATACTTGTTTCTA--TTTA---A--TA-AGAGAAGAACGTATGCAGAGAAC--AAGTA-------------------CACCAAATAGTTCTAG---AAAAAAAAATAAGAATTGTACCAAAAT-------------------AAAGAAA-------GGATTGTCTAGCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69319363 126 - 118206036 ATGTGTATAAGATGTATACTTGTTTCTA--TTTA---A--TA-AGAGAAGAACATACGCAGAGAAC--AAGTA-------------------CACCAAATAGTTCTAG---AAAAAAAAATAAGAATTGTACCAAAAT-------------------AAAGAAA-------GGATTGTCTAGCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111523317 126 - 190429646 ATATGTGTAAGATGTATACTTGTTTCTA--TTTA---A--TA-AGAGAAGAACATATGCAGAGAAC--AGGTA-------------------CACCAAATAGTTCTAG---AAAAAAAAAAAAGAATTATACCAAAAT-------------------AAAGAAA-------GGATTATCAAGAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110691458 128 - 189454096 ATATGTGTAAGATGTATACTTGTTTCTA--TTTA---A--TA-AGAGAAGAACATATGCAGAGAAC--AGGTA-------------------CACCAAATAGTTCTAG-AAAAAAAAAAAAAAGAATTATACCAAAAT-------------------AAAGAAA-------GGATTATCTAGAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13259517 129 + 26754465 ATATGTGTAAGATGTATACTTGTTTCTA--TTTA---A--TA-AGAGAAGAACATATGCGGAGAAC--AGGTA-------------------CACCAAATAGTTCTAGaaaaaaaaaaaaaaagaattataccaaaat-------------------aaagaaa-------GGATTATCTAGAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4160766 129 - 5137665 ATATGTGTAAGATGTATACTTGTTTCTA--TTTA---A--TA-AGAGAAGAATATATGCAGAGAAC--AGGTA-------------------CACCAAATAGTTCTAGaaaaaaaaaaaaaaagaattataccaaaat-------------------aaagaaa-------GGATTATCTAGAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122875612 126 - 135778131 ATACGTGTAAGATGTATACTTGTTTCTA--TTTA---A--TA-AGAGAAGAACATATGCAGAGAAC--AGGCA-------------------CACCAAATAGTTCTAG---AAAAAAAAATAAGAATTGTACCAAAAT-------------------AAAGAAA-------GGATTATCTAGAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1977452 125 + 2427316 ATATGTGTAAGATGTATACTTGTTTCTA--TTTA---A--TA-AGAGAAGAACATATGCAGAGAAC--AGGTA-------------------CACCAAATAGTTCTAG---AAAAAAAAA-AAGAATTATACCAAAAT-------------------AAAGAAA-------GGATTATCTAGAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1260448 127 + 1448899 ATATGTGTAAGATATTTCCTTGTTTCTA--TTTA---A--TA-AGAGAAGAACATATGCGGAGAAC--AGGTA-------------------CACCAAATAGTTCTAG--AAAAAAAAAATAAGAATTGTACCAAAAT-------------------AAAGAAA-------GGATTATCTAGAA i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9357434 123 - 11631747 ATGTATATAAGATGTATACTTGTTTCTA--TTTA---A--TA-ACAGAAGAACATTTGCAAAGAAT--AAGTA-------------------CACCAAATAGTCCTAG-----AAATAAATAAGAATTGCACCAAAA--------------------AAAGAAA-------GGATTGTCCAGCA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8594727 156 + 8790067 ACTTGAAAAAGATACATCCTCTCCTCTATCTCTG---A--TA-AGAAGATCCCACATCCAAAACACTGAGGTAGGCAAAGATGTCATTAGGGCACAAAAGACATTAAT---CATAAAACAAAATAATTTCATCAAAAT-------------------TAAAAACAtcagctggactgtgtcaca i otoGar3.GL873602 C 0 I 152 s mm10.chr5 76398901 146 + 151834684 agatatgtaTGACATAGACTTGTTTCTC--TTCA---ATGTA-AGGGGagaaagaaagaaagaaag--aaaga--------------------aagaaagaaagaaag---aaagaaagagagaaGTAGAGCCAGTGTTAGAAAACTCCTGCATTTCTAAGAAA-------GTCTTCTTCAGGA i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4073332 117 - 5279953 ATGTATACAAGATGTGTACTTGATTCTA--TTTATGTA--TGCAGAAATGAACAAATG----------CAGTA-------------------AACCAAGTAACTCTAT-------AAAAATAAGAATTGTACTAAGA--------------------GGAGGAA-------AGATTGTCCAGCA i dasNov3.JH568349 I 729 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e canFam3.chr13 47960863 0 + 63241923 C a score=1124548.000000 s hg38.chr4_KI270787v1_alt 36819 149 + 111943 TGGGTAATCAAGAATCATA-------AG---AAAAGGAATCCAACAATATGTGTCCTAATGATAAATTAACCCAATGTCCTAAAGACAAAAATTAAATATGTGTCTTCAAGCTCTCATAGCTGGGGGGTCAAACTTCTATACTACCAAACTAACTATAA s panTro5.chr4 119601772 149 - 194502333 TGGGTAATCAAGAATCATA-------AG---AAAAGGAATCCAACAATATGTGTCCTAATGATAGATTAACCCAATGTCCTAAAGACAAAAATTAAATATGTGTCTTCAAGCTCTCATAGCTGGGGGGTCAAACTTCTATACTACCAAACTAACTATAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015376 149 - 195804263 TGGGTAATCAAGAATCATA-------AG---AAAAGGAATCCAACAATATGTGTCCTAATGATAGATTAACCCAATGTCCTAAAGACAAAAATTAAATATGTGTCTTCAAGCTCTCATAGCTGGGGGGTCAAACTTCTATACTACCAAACTAACTATAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446523 149 - 17550833 TGGGTAATCAAGAATCATA-------AG---AAAAGGAATCCAACAATATGTGTCCTAATGATAAATTAACCCAATGTCCTAAAGACAAAAATTAAATATGTGTCTTCAAGCTCTCATAGCTGGGGGGTCAAACTTCTATACTACCAAACTAGCTATAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69319489 144 - 118206036 TGGGTAATCAAGAATCAT---------------AAGGAATCCAACAATATGTGTCCTAATGATAAATTCACCAAATGTCCTAAAGACAAAAATTAAATATGTATCTTCAAGCTCTCATAGTTAGGGGTTGAAACTTCTATACTACCAAACTAACTATAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111523443 149 - 190429646 TGGGTAATCAAGAATCATA-------AG---AAAAGGAATCCAACAATATGTGCCCTAATGATAAATTAACCAAATGTCCTAAAGACAAAAATTAAATATGTGTCTTCAAGCTCTCATAGCTAGGAGTTGAAACTTCTATACTACCAAACTAACTATAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110691586 149 - 189454096 TGGGTAATCAAGAATCATA-------AG---AAAAGGAATCCAACAATATGTGCCCTAATGATAAATTAACCAAATGTCCTAAAGACAAAAATTAAATATGTGTCTTCAAGCTCTCATAGCTAGGAGTTGAAACTTCTATACTACCAAACTAACTATAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13259646 149 + 26754465 TGGGTAATCAAGAATCATA-------AG---AAAAGGAATCCAACAATATGTGCCCTAATGATAAATTAACCAAATGTCCTAAAGACAAAAATTAAATATGTGTCTTCAAGCTCTCATAGCTAGGAGTTGAAACTTCTATACTACCAAACTAACTATAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4160895 149 - 5137665 TGGGTAATCAAGAATCATA-------AG---AAAAGGAATCCAACAATATGTGCCCTAATGATAAATTAACCAAATGTCCTAAAGACAAAAATTAAATATGTGTCTTCAAGCTCTCATAGCTAGGAGTTGAAACTTCTATACTACCAAACTAACTATAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122875738 149 - 135778131 TGGGTAATCAAGAATCATA-------AG---AAAAGGAATCCAATGATATGTGCCCTAATGATAAATTAACCAAATGTCCTAAAGACAAAAATTAAATATGTGTCTTCAAGCTCTCATAGCTAGGGGTTGAAACTTCTATACTACCAAACTAACTATAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1977577 149 + 2427316 TGGGTAATCAAGAATCATA-------AG---AAAAGGAATCCAACAATATGTGCCCTAATGATAAATTAACCAAATGTCCTAAAGACAAAAATTAAATATGTGTCTTCAAGCTCTCATAGCTAGGAGTTGAAACTTCTATACTACCAAACTAACTACAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1260575 149 + 1448899 TGGGTAATCAAGAATCATA-------AG---AAAAGGAATCCAACAATATGTGCCCTAATGATAAATTAACCAAATGTCCTAAAGACAAAAATTAAATATGTGTCTTCAAGCTCTCATAGCTAGGGGTTGAAACTTCTATACTACCAAACTAACTATAA i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9357557 149 - 11631747 TGGGTAATCAGGAATCATA-------AG---AAAAGGAATCCAAAACTATGTTTCCTAATGATATGTTAATCACATGTCCTAAAGACAAAAATTAAATATGTGTCTTCAAGCTTTCATAGCTAAGGGTTGAAACTTATATACTACCAAACTAACTATAA i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76399047 133 + 151834684 -TGTAAATCAAGCACTATA-------GGTCATAAAAGAAATTAACACTAATTA--CAACTTATAAATTAATCAAATATTCTTAAAACAAAAAGTACATATGTGTACTCAATTTCTCATATGTAGGAG----------------ACCAAACTAACTGTGA i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4073449 144 - 5279953 TGGGTAAGCAAATGTCATAACCAAGTAG---AAAGTGGATTCAAGAGTATGTTTCCTAAGGATAAATTAACCAAATGTCCTAAAAACAAAAACTAAA------ACCTCATTATCT------TAGGAATTAAAACCTTTATATGATTGAACTAACTATAA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e otoGar3.GL873602 8594883 152 + 8790067 I e canFam3.chr13 47960863 0 + 63241923 C a score=77818.000000 s hg38.chr4_KI270787v1_alt 36968 11 + 111943 TAAAACTCTTg---- s panTro5.chr4 119601921 11 - 194502333 TAAAACTCTTg---- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015525 11 - 195804263 TAAAACTCTTg---- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446672 11 - 17550833 TAAAACTCTTg---- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69319633 11 - 118206036 TAAAACTCTTg---- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111523592 11 - 190429646 TAAAACTCTTg---- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110691735 11 - 189454096 TAAAACTCTTg---- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13259795 11 + 26754465 TAAAACTCTTg---- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4161044 11 - 5137665 TAAAACTCTTg---- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122875887 11 - 135778131 TAAAACTCTTg---- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1977726 11 + 2427316 TAAAACTCTTg---- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1260724 11 + 1448899 TAAAACTCTTg---- i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9357706 11 - 11631747 TAAAACTCTTg---- i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76399180 15 + 151834684 TAATATTCTAATGTA i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e dasNov3.JH568349 4073593 0 - 5279953 C e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e otoGar3.GL873602 8594883 152 + 8790067 I e canFam3.chr13 47960863 0 + 63241923 C a score=802097.000000 s hg38.chr4_KI270787v1_alt 36979 110 + 111943 gccgggcacggtggctcacgcctgtaatcttagcactttgagtggccaaggtgggtagatcacttgatctcaggagttcaagaccagcctgggcaacatggcaaaacccc s panTro5.chr4 119601932 110 - 194502333 gccgggcacggtggctcacgcctgtaatcttagcactttgagtggccaaggtgggtagatcacttgatctcaggagttcaagaccagcctgggcaacatggcaaaacccc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015536 110 - 195804263 gccgggcatggtggctcacgcctgtaatcttagcactttgagtggccaaggtgggtagatcacttgatctcaggagttcaagaccagcctgggcaacatggcaaaacccc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446683 110 - 17550833 gctgggcacggtggctcacgcctgtaatcttagcactttgagtggccaaggtgggtagatcacttgatctcaggagttcaagaccagcctgggcaacatggcaaaacccc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69319644 110 - 118206036 gccgggcacggtggctcacgcctgtaatcttagcactttgagtggccaaggtgggtagatcacttgatctcaggagttcaagaccagcctgggcaacatggcaaaagccc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111523603 110 - 190429646 gccaggtacggtggctcacgcctgtaatcttagcactttgagaggctgaggtgggtagatcacttgatcttaggagttcaagaccagcctgggcaacatggcaaaaccct i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110691746 110 - 189454096 gccaggtacggtggctcacgcctgtaatcttagcactttgagaggctgaggtgggtagatcacttgatcttaggagttcaagaccagcctgggcaacatggcaaaacccc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13259806 110 + 26754465 gccaggtacggtggctcacgcctgtaatcttagcactttgagaggctgaggtgggtagatcacttgatcttaggagttcaagaccagcctgggcaacatggcaaaacccc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4161055 110 - 5137665 accaggcacggtggctcacgcctgtaatcttagcactttgagaggctgaggtgggtagatcacttgatcttaggagttcaagaccagcctgggcaacatggcaaaacccc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122875898 110 - 135778131 gccgggcacggtggctcacgcctgtaatcttagcactttgagaggctgaggtgggtagatcacttgatctcaggagttcaagaccagcctgggcagcatggcaaaacccc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1977737 110 + 2427316 gccaggcacggtggctcacgcctgtaatcttagcactttgagaggctgaggtgggtagatcacttgatcttaggagttcaagaccagcctgggcaacatggcaaaacgcc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1260735 103 + 1448899 gccgggca-------tcacgcctgtaatcttagcactttgagaggctgaggtgggtagatcacttgatctcaggagttcaagactagcctgggcaacatggcaaaacccc i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9357717 110 - 11631747 gccaggcaccatggctcaggtctgtaatcttagcactttgagaagccaaggtgagtaaatcacttgatctcaggagttcaagaccagcctgggcaacttggcaaaaccct i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8595035 110 + 8790067 gcctgatgtggcagttcgcacatacaaccctggtactttgggaggtcaagatgagaggatcacttagggccaggagttagagaccaaactggacaacatTCAAGGTCCCC i otoGar3.GL873602 I 152 C 0 s mm10.chr5 76399195 79 + 151834684 -ACCAGTGCGGTGAGACACAACCATAACCTCAGCTCTGGAGGAAGCTGAGATGAG------------------------------GCTCTAGTCAAGTTAGCAAGAATTT i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e dasNov3.JH568349 4073593 0 - 5279953 C e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e canFam3.chr13 47960863 0 + 63241923 C a score=1147690.000000 s hg38.chr4_KI270787v1_alt 37089 172 + 111943 gtctctacaaaaaaatacaaaaattagccaggcatggtggtgtgtacctgt----------------ggggctggggcagggaggattgcttgagcccaggaggtggaggtcgcagtg-agccaagattacgccactgcgctccagccggggtgacagagaccctatctcaacaaaaaataa-taataaa s panTro5.chr4 119602042 188 - 194502333 gtctctacaaaaaaatgcaaaaattagccaggcatggtggtgtgtacctgtagtcccaactactagtggggctggggcagggaggattgcttgagcccaggaggtggaggttgcagtg-agccaagattacgccactgcgctccagcctgggtgacagagaccctatctcaacaaaaaaaaa-taataaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015646 188 - 195804263 gtctctacaaaaaaatacaaaaattagccaggcatggtggtgtgtacctgtagtcccaactactagtggggctggggcagggaggattgcttgagcccaggaggtggaggttgcagtg-agccaagattacgccactgcgctccagcctgggtgacagagaccctatctcaacaaaaaaaaa-taataaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446793 188 - 17550833 gtctctacaaaaaaatacaaaaattagccaggcatggtggtgtgtacctgtagtcccaactactagtggggctggggcagggaggattgcttgagcccaggacgtggaggttgcagtg-agccaagattacgccactgcgctccagcctgggtgacagagaccctgtctcaacaaaaaataa-taataaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69319754 188 - 118206036 gtctctaaaaaaaaatacaaaaattagccaggcatggtggtgtgtacctgtagtcccaactactagtggggctggggcagagaggattgcttgagcccaggaggcagaggttgcagtg-agccaagattatgccactgcactccagcctgggtgacagagaccctgtctcaacaaaaaataa-taataaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111523713 188 - 190429646 gtctctacaaaaaaatacaaaaattagccaggcatggtggtgtgtacctgtagtcccaactactagtggggctggggcagggaggattgcttgagcccaggaggtggaggtcgcagtg-agccaagattatgccagggcactccagccgaggtgacagagaccctgtctcataaaaaaa-aaataataaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110691856 186 - 189454096 gtctctacaaaaaaatacaaaaattagccaggcatggtggtgtgtacctgtagtcccaactactagtggggctggggcagggaggattgcttgagcccaggaggtggaggtcgcagtg-agccaagattatgccagggcactccagccgaggtgacagagaccctgtctcataaaaaaa-aa--aataaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13259916 187 + 26754465 gtctctacaaaaaaatacaaaaattagccaggcatggtggtgtgtacctgtagtcccaactactagtggggctggggcagggaggattgcttgagcccaggaggtggaggtcgcagtg-agccaagattatgccagggcactccagccgaggtgacagagaccctgtctcataaaaaaa-aa-taataaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4161165 187 - 5137665 gtctctacaaaaaaatacaaaaattagccaggcatggtggtgtgtacctgtagtcccaaccactagtggggctggggcagggaggattgcttgagcccaggagatggaggtcgcagta-agccaagattatgccagggcactccagcctaggtgacagagaccctgtctcatcaaaaaa-aa-taataaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122876008 186 - 135778131 atctctacaaaaaaatac--aaattatccacgcatggtggtgtgtacctgtagtcccaactactagtggggctggggcagggaggattgcttgagcccaggaggtggaggttgcagtg-agccaagattatgccactgcactccagcctaggtgacagagaccctatctcaacaaaaaataa-taataaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1977847 187 + 2427316 gtctctacaaaaaaatacaaaaattagccaggcatggtggtgtgtacctgtagtcccatctactagtggggctggggcagggaggattgcttgagcccaggaggtggaggtcgcagtg-agccaagattatgccagggcactccagcctaggtgacagagaccctgtctcatcaaaaaa-aa-taattaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1260838 188 + 1448899 gtctctacaaaaaaatacaaaaattagccaggcatggtggtgtgtacctgtagtcccaactactagtggggctggggcagggaggattgcttgagcccaggaggtggaggttgcagtg-agccaagattatgccactgcactccagcctaggtgacatagaccctgtctcaacaaaaaataa-taataaa i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9357827 176 - 11631747 gtctctac-aaaaaatacaaaaattagccaagcatggtggtgtgtccctgtagtcccaactattagtggggctggggtggggaggattgcttaagcccaggaggcagaggctgcagtg-agccacaatcacgccactgcactccagcctagatgatagagaccttgtct-----------aa-aaaaaaa i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76399274 110 + 151834684 -------------GATTTAAAAA----------ACGGTG-------------------------AGAAAGGATGGAGAGGCTAGACATG---AAGCCCAGTGTTAGAACGTTGCATAGAAGGTGAGAT-------CTGCATTT-----------------ACTCTTTGTTACCACATAA-GA-GAAT--- i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e dasNov3.JH568349 4073593 0 - 5279953 C e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C a score=707396.000000 s hg38.chr4_KI270787v1_alt 37261 97 + 111943 aaaaTTCTAATACAATGTACATAGTT----TTATATAATttta-tttttttt--------------aaatgtagccacatggttcaaatttcaatcataaaatattaaaaggt----ata s panTro5.chr4 119602230 103 - 194502333 aaaaTTCTAATACAATGTACATAGtt----ttatataatttta-ttttattt----ttttA----AAAATGTAGCCACATGGttcaaatttcaattataaaatattaaaaggt----ata i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015834 102 - 195804263 aaaaTTCTAATACAATGTACATAGtt----ttatataatttta-ttttattt----ttttA-----AAATGTAGCCACATGGttcaaatttcaattataaaatattaaaaggt----ata i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4446981 108 - 17550833 aaaaTTCTAATACAATGTACATAGTT----TTATATAATTTTATTTTTATTT----TTTTAAAAGATAATGTAGCCACATGGttcaaatttcaattataaaatattaaaatgt----ata i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69319942 111 - 118206036 aaaa-TCTAATACAATGTACATAGTT----TTATATAATTTTACTGTTATTTGATTTTTTATAAGATAATGTAGCCACATGGttcaaatttcaattataaaatattaaaatgt----ata i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111523901 116 - 190429646 aaaaTTCTAATACAATGTACACAGTT----TTATATAATTTTACTCTTATTTAATTTTTTAAAAGATAATGTAGCCACATGGttcaaatttcaattataaaatattaaaaggtatagata i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110692042 116 - 189454096 aaaaTTCTAATACAATGTACACAGTT----TTATATAATTTTACTCTTATTTAATTTTTTAAAAGATAATGTAGCCACATGGttcaaatttcaattataaaatattaaaaggtatagata i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13260103 116 + 26754465 aaaaTTCTAATACAATGTACACAGTT----TTATATAATTTTACTCTTATTTAATTTTTTAAAAGATAATGTAGCCACATGGTTCAAATTTCAATTATAAAATATTAAAAGGTATAGATA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4161352 116 - 5137665 aaaTTTCTAATACAATGTACACAGTT----TTATATAATTTTACTCTTATTTAATTTTTTAAAAGATAATGTAGCCACATGGTTCAAATTTCAATTATAAAATATTAAAAGGTATAGATA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122876194 116 - 135778131 aaGATTCTAATACAATGTACACAGTT----TTATATAATTTTACTCTTATTTAATTTTTTAAAAGATAATGTAGCCACATGGTTCAAACTTCAATTATAAAATATTAAAAGATATAGATA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1978034 116 + 2427316 aaaaTTCTAATACAATGTACACAGTT----TTATATAATTTTACTCTTATTTAATTTTTTAAAAGATAATGTAGCCACATGGTTCAAATTTCAATTATAAAATATTAAAAGGTATAGATA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1261026 116 + 1448899 aaaaTTCTAATACAATGTACACAGTT----TTATACAATTTTACTCTTATTAAATTTTTTAAAAGATAAGGTAGCCACATGGTTCAAATTTCAATTATAAAATATTAAAAGGTGTAGATA i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9358003 112 - 11631747 aaaaCTAATACACAATGTACATAGTT----TTATGTAATTTTACTCTTATTTAATTTTTTAAAAGATAATGTAGCCACATGGTTCAAATTTCAATTATAAAATATTAAAAGGT----ATA i aotNan1.NW_018493494v1 C 0 I 967 s mm10.chr5 76399384 98 + 151834684 ---CCCCAAATACAGGATACATACCTTCTATTCTAAAATTTTA-----------------ATAACACAATACTCCCCTATGGCTTAAATTTCAATC-TAAAATATT-AAAGCTACAAATC i mm10.chr5 C 0 I 7 s dasNov3.JH568349 4073593 110 - 5279953 AAAACACTAGTTCTACATACATAGGT----TTTATTAACTTTAACCTTAATT------TTTAAAGATAGTATAGCCACATGACTCAAACTTTTAATATAAAATATGAAGAGATATATAGA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C a score=149447.000000 s hg38.chr4_KI270787v1_alt 37358 27 + 111943 attttaaattttacat--ttctttttaag s panTro5.chr4 119602333 27 - 194502333 attttaaattttacat--ttCTTTTTAAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015936 27 - 195804263 attttaaattttacat--ttCTTTTTAAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4447089 27 - 17550833 attttaaattttaTGT--TTCTTTTTAAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69320053 27 - 118206036 atttcaaatttcaTGT--TTTTTTTAAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111524017 27 - 190429646 attttaaattttatgt--ttttttttaaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110692158 27 - 189454096 attttaaattttatgt--ttttttttaaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13260219 27 + 26754465 ATTTTAAATTTTATGT--TTTTTTTTAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4161468 26 - 5137665 ATTTTAAA-TTTATGG--TTTTTTTTAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122876310 27 - 135778131 ATTTTAAATTTTATGT--TTCTTTTTAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1978150 27 + 2427316 ATTTTAAATTTTATGG--TTTTTTTTAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1261142 27 + 1448899 ATTTTAAATTTTATGT--TTTTTTTTAAA i colAng1.NW_012119221v1 C 0 C 0 s mm10.chr5 76399489 27 + 151834684 ATATTAAATTTTATGT--TTTTGAAAGAA i mm10.chr5 I 7 I 1 s dasNov3.JH568349 4073703 28 - 5279953 ATATTAAATACTAAATTGTTTTCTTTAA- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e aotNan1.NW_018493494v1 9358115 967 - 11631747 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C a score=945091.000000 s hg38.chr4_KI270787v1_alt 37385 124 + 111943 tccctctttttcacttgtcccccatctgctcagttatgagtgtctcagaagcccctcccaatccaggtaaccactgatcagtgtgttatgtcttcttacagagtttcttcatgcataataaaga s panTro5.chr4 119602360 124 - 194502333 TCCCTCTTTTTCACTTGTCCCCCATCTGCTCAGTTATGAGTGTCTCAGAAGcccctcccaatccaggtaaccactgatcagtgtgttatgtcttcttacagagtttcttcatgcatAATAAAGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121015963 124 - 195804263 TCCCTCTTTTTCACTTGTCCCCCATCTGCTCAGTTATGAGTGTCTCAGAAGcccctcccaatccaggtaaccactgatcagtgtgttatgtcttcttacagagtttcttcatgcatAATAAAGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4447116 124 - 17550833 TCCCTCTTTTTCACTTGTCCCCCATCTGCTCAGTTATGAGTGTCTCAGAAGcccctcccaatccaggtaaccactgatcagtgtgttatgtcttcttacagagtttcttcatgcatAATAAAGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69320080 124 - 118206036 TCCCTCTTTTTCACTTGTCCCCCATCTGCTCAGTTATGAGTGTCTCAGAAGCCCCTCCCAATCTAGGTAACCACTGATCAGTGTGTCATGTCTTCTTACAGAGTTTCTTTGTGCATAATAAAGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111524044 123 - 190429646 tCCCTCTTTTTTACTTGTCCCCCATTTGCTCAGTTATGAGTGTCTCAGAAG-CCCTCCCAATCCAAGTAACCACTGATCAGTGTGTTATGTCTTCTTACAGAGTTTGTTCGTGCATAATAAAGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110692185 123 - 189454096 tCCCTCTTTTTCACTTGTCCCCCATTTGCTCAGTTATGAGTGTCTCAGAAG-CCCTCCCAATCCAGGTAACCACTGATCAGTGTGTTATGTCTTCTTACAGAGTTTGTTCGTGCATAATAAAGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13260246 123 + 26754465 TCCCTCTTTTTCACTTGTCCCCCATTTGCTCAGTTATGAGTGTCTCAGAAG-CCCTCCCAATCCAGGTAACCACTGATCAGTGTGTTATGTCTTCTTACAGAGTTTGTTCGTGCATAATAAAGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4161494 123 - 5137665 TCCCTCTTTTTCACTTGTCCCCCATTTGCTCAGTTATGAGTGTCTCAGAAG-CCCTCCCAATGCAGGTAACCACTGATCAGTGTGTTATGTCTTCTGACAGAGTTTGTTCGTGCATAATAAAGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122876337 123 - 135778131 TCCCTCTTTTTCACTTGTCCCCCATTTGCTCAGTTATGAGTGTCTCAGAAG-CTCTCCCAATCCAGGTAACCACTGATCAGTGTGTTATGTCTTCTTACAGAGTTTGTTTGTGCATAATAAAGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1978177 123 + 2427316 TCCCTCTTTTTCACTTGTCCCCCATTTGCTCAGTTATGAGTGTCTCAGAAG-CCCTCCCAGTCCAGGTAACCACTGATCAGTGTGTTATGTCTTCTTACAGAGTTTGTTCGTGCATAATAAAGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1261169 123 + 1448899 TCCCTCTTTTTCACTTGTCCCCCATTTGCTCAGTTATGAGTGTCTCAGAAG-CCCTCCCAATCCAGGTAACCACTGATCAGTGTGTTATGTCTTCTTACAGAGTTTGTTTGTGCATAATAAAGA i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9359082 118 - 11631747 TCCCTGTTTCTCACTTGTACCCCATCTGCTCAGTTATGAGTCTCTCAGAAGCCCCTCCCAGTCCAGGTAACCAC----CAGTGTGTTATGTCTTCTTAC--AGTTTCTTTATGCATAATAAAGA i aotNan1.NW_018493494v1 I 967 C 0 s mm10.chr5 76399517 113 + 151834684 TCTCATTTTCTCACAAGTCTCCCATGTGCTCAGTTCTTCTTCTGCTGGAAGTCCCTCTAAATACAGGTAAACA-----CAGTGAGTA------TCTTGCACAGTTTCTGTGTGCACTATCAAAA i mm10.chr5 I 1 I 378 s dasNov3.JH568349 4073731 119 - 5279953 TCTCTTTTTCTCATTTGTACCTCAAGTGTTCAATTCCCACTCCCTCAGAAGCCCCTCCTAATCTGGATAACCACGGATAAGTTTTTTG-----TCTTATGGAGTTTCTTTGTGCATAGTAAAGA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C a score=121919.000000 s hg38.chr4_KI270787v1_alt 37509 18 + 111943 aaataatgaattatttgt s panTro5.chr4 119602484 18 - 194502333 AAATAATGAATTATTAGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121016087 18 - 195804263 AAATAATGAATTATTAGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4447240 18 - 17550833 AAATAATGAATTATTAGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69320204 18 - 118206036 AAATAATGAATTATTAGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111524167 18 - 190429646 AAATAATGAATTATTAGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110692308 18 - 189454096 AAATAATGAATTATTAGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13260369 18 + 26754465 AAATAATGAATTATTAGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4161617 18 - 5137665 AAATAATGAATTATTAGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122876460 18 - 135778131 AAATAACGAATTATTAGT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1978300 18 + 2427316 AAATAATGAATTATTAGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1261292 18 + 1448899 AAATAATGAATTATTAGA i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9359200 18 - 11631747 AAATAATGAATTATTAGT i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4073850 15 - 5279953 GCAT-ATGAATTATTT-- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e mm10.chr5 76399630 378 + 151834684 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C a score=277332.000000 s hg38.chr4_KI270787v1_alt 37527 35 + 111943 ccctctttctaaacaaatTTTATTCTCTTCC--CAGG s panTro5.chr4 119602502 35 - 194502333 CCCTCTTTCTAAACAAATTTTATTCTCTTCC--CAGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121016105 35 - 195804263 CCCTCTTTCTAAACAAATTTTATTCTCTTCC--CAGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4447258 35 - 17550833 CCCTCTTTCTAAACAAATTTTATTCTCTTCC--CAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69320222 35 - 118206036 CCCTCTTTCTAAACAAATTTTATTCTCTTCC--CAGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111524185 35 - 190429646 CCCTCTTTCTAAACAAATGTTATTATCTTCC--CAGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110692326 35 - 189454096 CCCTCTTTCTAAACAAATTTTATTATCTTCC--CAGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13260387 35 + 26754465 CCCTCTTTCTAAACAAATTTTATTATCTTCC--CAGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4161635 35 - 5137665 CCCTCTTTCTAAACAAATTTTATTATCTTCC--CAGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122876478 35 - 135778131 CCCTCTTTCTAAACGAATTTTATTCTCTTCC--CAGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1978318 35 + 2427316 CCCTCTTTCTAAACAAATTTTATTATCTTCC--CAGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1261310 35 + 1448899 CCCTCTTTCTAAACGACTTTTATTCTCTTCC--CAGG i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9359218 35 - 11631747 CCCTCTTTCTAAACAAATTTTATTCTCTTCC--CAGG i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76400008 36 + 151834684 CCATTCTTTTAAACAAGTATT-TTCTCTTCCGGAAAG i mm10.chr5 I 378 C 0 s dasNov3.JH568349 4073865 35 - 5279953 CTCTCTTTTTTAAAAATTTTCATTTTCTTCC--TAGA i dasNov3.JH568349 C 0 I 559 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C a score=695247.000000 s hg38.chr4_KI270787v1_alt 37562 94 + 111943 TTTTAAAAattgaaaca----taa----t----ataccataaaattcactcttttaaagtgtacaattaagtggtttttattatattcataaagatgtacagccat s panTro5.chr4 119602537 94 - 194502333 TTTTAAAAattgaaaca----taa----t----ataccataaaattcactcttttaaagtgtacaattaagtggtttttattatattcataaagatgtacagccat i panTro5.chr4 C 0 C 0 s panPan2.chr4 121016140 94 - 195804263 TTTTAAAAattgaaaca----taa----t----ataccataaaattcactcttttaaagtgtacaattaagtggtttttattatattcataaagatgtacagccat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4447293 94 - 17550833 TTTTAAAAattgaaaca----taa----t----ataccataaaattcactcttttaaagtgtacaattaagtggtttttattatattcataaagatgtacagccat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69320257 98 - 118206036 TTTTAAAAattgaaacataattaa----t----atactataaaattcactcatttaaagtgtacaattaagtggtttttattatattcataaagatgtacagccat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111524220 94 - 190429646 TTTTAAAAatggaaaca----taa----t----ataccataaaattcactcttttaaagtgtacaattaagtggtttttattatattcataaagatgtacagccat i rheMac8.chr5 C 0 I 3 s macFas5.chr5 110692361 94 - 189454096 TTTTAAAAattgaaaca----taa----t----ataccataaaattcactcttttaaagtgtacaattaagtggtttttattatattcataaagatgtacagccat i macFas5.chr5 C 0 I 3 s macNem1.NW_012012466v1 13260422 94 + 26754465 TTTTAAAAattgaaaca----taa----t----ataccataaaattcactcttttaaagtgtacaattaagtggtttttattatattcataaagatgtacagccat i macNem1.NW_012012466v1 C 0 I 3 s cerAty1.NW_012001307v1 4161670 94 - 5137665 TTTTAAAAattgaaaca----taa----t----ataccataaaattcactcttttaaagtgtacaattaagtggtttttattatattcataaagatgtacagccat i cerAty1.NW_012001307v1 C 0 I 3 s chlSab2.chr7 122876513 94 - 135778131 TTTTAAAAattgaaata----taa----t----atactataaaattcactcttctaaagtgtacaattaagtggtttttattatattcataaagatgtacagccat i chlSab2.chr7 C 0 I 3 s manLeu1.NW_012104388v1 1978353 94 + 2427316 TTTTAAAAattgaaaca----taa----t----ataccttaaaattcactcttttaaagtgtacaattaagtggtttttattatattcataaagatgtacagccat i manLeu1.NW_012104388v1 C 0 I 3 s colAng1.NW_012119221v1 1261345 94 + 1448899 TTTTAAAAattgaaaca----taa----t----ataccataaaattcactcttttaaagtgtacaattaagtggttttaattatattcataaagatgcacagccat i colAng1.NW_012119221v1 C 0 I 10984 s aotNan1.NW_018493494v1 9359253 98 - 11631747 TTTTAAAAattaaaacg----taattagt----atactataaaattaactcttttgaggtgtacaattaagtggtttttattatattcataaagatgtatagccat i aotNan1.NW_018493494v1 C 0 I 3 s mm10.chr5 76400044 98 + 151834684 TTTTAAAAattaaaaca----taa----ttatcatagtgtaaaaccgactcctttaaagtggtcaagtatgcggttgttgctatattcatattgctatgtagacat i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e dasNov3.JH568349 4073900 559 - 5279953 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C a score=387737.000000 s hg38.chr4_KI270787v1_alt 37656 71 + 111943 catca----ctaattaaagaacattttcatcactccaaaa----ataa-----atgccccttagctatcaccccc--ctgccccca s panTro5.chr4 119602631 71 - 194502333 catca----ctaattaaagaacattttcatcactccaaaa----ataa-----atgccccttagctatcaccccc--ctgccccca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121016234 71 - 195804263 catca----ctaattaaagaacattttcatcactccaaaa----ataa-----atgccccttagctatcaccccc--ctgccccca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4447387 71 - 17550833 catca----ctaattaaagaacattttcatcaccccaaaa----ataa-----atgccccttagctatcaccccc--ctgccccca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69320355 75 - 118206036 caccactatctaattagagtacattttcatcactccaaaa----acaa-----atgccccttagctatcaccccc--ctgccccca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111524317 72 - 190429646 cacca---tccaattaaagaacattttcatcactccaaaa----ataa-----atgccccttagctatcaccctc--ctaccccca i rheMac8.chr5 I 3 C 0 s macFas5.chr5 110692458 72 - 189454096 cacca---tccaattaaagaacattttcatcactccaaaa----ataa-----atgccccttagctatcaccctc--ctaccccca i macFas5.chr5 I 3 C 0 s macNem1.NW_012012466v1 13260519 72 + 26754465 cacca---tccaattaaagaacattttcatcactccaaaa----ataa-----atgccccttagctatcaccctc--ctaccccca i macNem1.NW_012012466v1 I 3 C 0 s cerAty1.NW_012001307v1 4161767 72 - 5137665 cacca---tccaattaaagaacattttcatcactccaaaa----ataa-----atgcctcttagctatcaccctc--ctgccccca i cerAty1.NW_012001307v1 I 3 C 0 s chlSab2.chr7 122876610 72 - 135778131 cacca---tccaattaaagaacattttcatcaatccaaaa----ataa-----atgccccctagctatcaccctc--ctgcctcca i chlSab2.chr7 I 3 C 0 s manLeu1.NW_012104388v1 1978450 72 + 2427316 cacca---tccaattaaagaacattttcatcactccaaaa----ataa-----atgccccttagctatcaccctc--ctgccccca i manLeu1.NW_012104388v1 I 3 C 0 s aotNan1.NW_018493494v1 9359354 77 - 11631747 cacta---tctaattaaagaacattttcatcacttcaaca----ataacatccatgcctcctggctatcacccct--ctgccctct i aotNan1.NW_018493494v1 I 3 C 0 s mm10.chr5 76400142 78 + 151834684 taact---tcagctaaaaggataaccccatcagcccgagatgccatct-----gtgtcttttagctatgacctcctacaacattca i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e dasNov3.JH568349 4073900 559 - 5279953 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e saiBol1.JH378162 8157457 0 - 15139346 C e calJac3.chr3 52993588 0 - 190850796 C e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C e colAng1.NW_012119221v1 1261439 10984 + 1448899 I a score=72486.000000 s hg38.chr4_KI270787v1_alt 37727 12 + 111943 gttcccccaacc s panTro5.chr4 119602702 12 - 194502333 gttcccccaacc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121016305 12 - 195804263 gttcccccaacc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4447458 12 - 17550833 gttcccccaacc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69320430 12 - 118206036 gttcccccatct i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111524389 12 - 190429646 gatcccccatct i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110692530 12 - 189454096 gatcccccatct i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13260591 12 + 26754465 gatcccccatct i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4161839 12 - 5137665 gttcccccatct i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122876682 12 - 135778131 gttcccccatct i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1978522 12 + 2427316 gttcccccatct i manLeu1.NW_012104388v1 C 0 C 0 s calJac3.chr3 52993588 12 - 190850796 gttccctcatct i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8157457 12 - 15139346 gctccctcatct i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9359431 12 - 11631747 gctacctcatct i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76400220 6 + 151834684 attccc------ i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e dasNov3.JH568349 4073900 559 - 5279953 I e cebCap1.NW_016107439v1 6941302 15 - 7304997 I e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C e colAng1.NW_012119221v1 1261439 10984 + 1448899 I a score=1164911.000000 s hg38.chr4_KI270787v1_alt 37739 121 + 111943 cactatccctaagcaatcattaatctactcc-tgtctctgtagatttgtctattctggacatttcatgtaaattgaatcatacagtaggtggcctttgtgactggcttc-----------------tttcacttagcac s panTro5.chr4 119602714 121 - 194502333 cactatccctaagcaatcattaatctactcc-tgtctctgtagatttgtctattctggacatttcatataaattgaatcatacagtaggtggcctttgtgactggcttc-----------------tttcacttagcac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121016317 121 - 195804263 cactatccctaagcaatcattaatctactcc-tgtctctgtagatttgtctattctggacatttcatataaattgaatcatacagtaggtggcctttgtgactggcttc-----------------tttcacttagcac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4447470 121 - 17550833 cactatccctaagcaatcattaatctactcc-tgtctctgtagatttgtctattctggacatttcatataaattgaatcaatcagtaggtggcctttgtgactggcttc-----------------tttcacttagcac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69320442 121 - 118206036 cactatccctaagcaatcattaatctactcc-tgtctctatagatttgtctattctggacatttcatataaatggaatcatacagtaggtggtctttgtgactggcttc-----------------tttcacttagcac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111524401 121 - 190429646 cactatccctaagcaatcattaatctactcc-tgtctctatagatttgtctattctggacatttcatataaattgaatcatacagtaagtggcctttgtgactgacttc-----------------tttcacttaacac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110692542 121 - 189454096 cactatccctaagcaatcattaatctactcc-tgtctctatagatttgtctattctggacatttcatataaattgaatcatacagtaagtggcctttgtgactgacttc-----------------tttcacttagcac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13260603 121 + 26754465 cactatccctaagcaatcattaatctactcc-tgtctctatagatttgtctattctggacatttcatataaattgaatcatacagtaagtggcctttgtgactgacttc-----------------tttcacttagcac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4161851 121 - 5137665 cactatccctaagcaatcattaatctactcc-tgtctctatagatttgtctattctggacatttcatataaattgaatcatacagtaggtggcctttgtgactgacttc-----------------tttcacttagcac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122876694 138 - 135778131 cactatccctaagcaatcattaatctactcc-tgtctctatagatttgtctattctggacatttcatataaattgaatcatacagtaggtggcctttgtgactgacttctttcacttagcacaatgtttcacttagcac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1978534 121 + 2427316 cactatccctaagcaatcattaatctactcc-tgtctctatagatttgtctattctggacatttcatataaattgaatcatacagtaggtggcctttgtgactgacttc-----------------tttcacttagcac i manLeu1.NW_012104388v1 C 0 C 0 s calJac3.chr3 52993600 121 - 190850796 cactatccctaagcaatcatgaatctaattc-tgtctctacaggtttgtctattctggacattccatataaattgaatcatacagtaggtggtctttgtgactggcttc-----------------tttcacttatcac i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8157469 121 - 15139346 cactatccctaagcaatcattaatctacttc-tgtctttataggtttgtcaattctggacatttcatacaaattgaatcatacggtaggtggtctttgtgactggcttc-----------------tttcacttagcac i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6941317 121 - 7304997 cactatcccgaagcaatcattaatctacttc-tgcctctataggtttgtcaattctggacatatcttttaagttgaatcatacagtaggtggtctttgtgactggcttc-----------------tttcacttagcac i cebCap1.NW_016107439v1 I 15 C 0 s aotNan1.NW_018493494v1 9359443 121 - 11631747 cactctccctaagcaatcattaatctacttc-tgtctctataggtttgtctattctggacatttcatgtaaattgaatcatacagtaggtggtctttgtgattggcttc-----------------tttcacttagcac i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76400226 119 + 151834684 ---tattcatgaccaaccaatgatctccttcttttctctattgatttgtctaatctatacatcccatacggatgactgcataccataatcccccttcgtggctggcttc-----------------tttcacttagcac i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e dasNov3.JH568349 4073900 559 - 5279953 I e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C e colAng1.NW_012119221v1 1261439 10984 + 1448899 I a score=1703092.000000 s hg38.chr4_KI270787v1_alt 37860 188 + 111943 aatgttttc-------------aaggttcatccatgttgcag-c-atg-tatcagtgcttca-ttcctttctatgat---tgactatccccattgtatagacatataccacatttgat----ctattcattaattgatagatattt--attgtttcga-agcttttggctattatgaataatactgc----tacaa----------acacacatgtaca---catttttgta s panTro5.chr4 119602835 188 - 194502333 aatgttttc-------------aaggttcatccatgttgcag-c-atg-tatcagtgcttca-ttcctttctatgat---tgactatccccattgtatagacatataccacacttgat----ctattcattaattgatagatattt--gttgtttcca-agcttttggctattatgaataatactgc----tacaa----------acacacatgtaca---catttttgta i panTro5.chr4 C 0 C 0 s panPan2.chr4 121016438 188 - 195804263 aatgttttc-------------aaggttcatccatgttgcag-c-atg-tatcagtgcttca-ttcctttctatgat---tgactatccccattgtatagacatataccacacttgat----ctattcattaattgatagatattt--gttgtttcca-agcttttggctattatgaataatactgc----tacaa----------acacacatgtaca---catttttgta i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4447591 188 - 17550833 aatgttttc-------------aaggttcatccatgttgcag-c-atg-tatcagtgcttca-ttcctttctatgat---tgcctatccccattgtatagacatataccacatttgat----ctattcattaattgatagatattt--gttgtttcca-agcttttggctattatgagtaatactgc----tacaa----------acacacatgtaca---catttttgta i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69320563 188 - 118206036 aatgttttc-------------aaggttcatccatgttgtat-c-atg-tatcagtgcttca-ttcctttctatgct---tgactatccccattgtatagacatataccacatttgat----ctattcattaactgatagatattt--gttgtttcca-agtttttggctattatgaataatactgc----tacga----------acacacatgtaca---catttttgtg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111524522 189 - 190429646 aatgttttc-------------aagattcatccatgttgtag-c-atgttatcagtgcttca-ttcctttctatgat---tgaatatccccattgtacagacacataccacatttcat----ctactcattaattgatagatattt--gttgtttcca-agtttttggctattatgaataatactgc----tacga----------acacacatgtaca---catttttgtg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110692663 188 - 189454096 aatgttttc-------------aagattcatccatgttgtag-c-atg-tatcagtgcttca-ttcctttctatgat---tgaatatccccattgtagagacacataccacattttat----ctactcattaattgatagatattt--gttgtttcca-agtttttggctattatgaataatactgc----tacga----------acacgcatgtaca---catttttgtg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13260724 188 + 26754465 aatgttttc-------------aagattcatccatgttgtag-c-atg-tatcagtgcttca-ttcctttctatgat---tgaatatccccattgtacagacacataccacatttcat----ctactcattaattgatagatattt--gttgtttcca-agtttttggctattatgaataatactgc----tacga----------acacgcatgtaca---catttttgtg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4161972 188 - 5137665 aatgttttc-------------aagattcatccatgttgtag-c-atg-tatcagtgcttca-ttcctttctatgat---tgaatatccccattgtacagacacataccacatttcat----ctactcattaattgatagatattt--gttgtttcca-agtttttggctattatgaataatactgc----tatga----------acacgcatgtaca---catttttgtg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122876832 188 - 135778131 aatgttttc-------------aaggttcatccatgttgtag-c-atg-tatcagtgcttca-ttcctttctatgat---tgaatatccccattgtacagacacataccacatttcat----ctactcattaactgatagatattt--gttgtttcca-agtttttggctattatgaataatactgc----tacga----------acacgcatgtaca---catttttgtg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1978655 188 + 2427316 aatgttttc-------------aagattcatccatgttgtag-c-atg-tatcagtgcttca-ttcctttctatgat---tgaatatccccattgtacagacacataccacatttcat----ctactcattaattaatagatattt--gttgtttcca-agtttttggctattatgaataatactgc----tacga----------acacgcatgtaca---catttttgtg i manLeu1.NW_012104388v1 C 0 C 0 s calJac3.chr3 52993721 184 - 190850796 aatgttttc-------------aaggttcgtccatgtggtag-c-atg-tatcagcacttca-ttcctctctgtggt---tgaatatccccgttgtacagacatataccacatttgat----ctattcattaattgata----ttt--gttgtttcca-agtttttggctattgtgaatagtactgc----tatga----------acactcatgtaca---catttttgtg i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8157590 184 - 15139346 agtgttttc-------------aaggttcatccgcatggtag-c-atg-tatcaacacttca-ttcctctctgtggt---tgaatatccccattgtacagacatataccacatttgat----ctattcgttaattgata----ttt--gttgtttcca-agtttttggctattgtgaataatactgc----tagga----------acaatcatgtaca---catttttgtg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6941438 184 - 7304997 aatgttttc-------------aaggttcatccatgtggtag-c-atg-tatcagcacttca-ttcctctctctggt---tgaatatccccattgtacagacatataccacatttgat----ctattcattaattgata----ttt--gttgtttcca-agtttttggctattgtgaataatactgc----tagga----------acactaatgtaca---catttttggg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9359564 181 - 11631747 aatgttttc-------------aaggttcatccatgcggtag-c-atg-tatcagcacttca-ttcctctctatggt---tgaatatccccattgtatagacatataccacatttgat----ttattcattaattgata---------gttgtttcca-agtttttggttattatgaataatactgc----tatga----------acactcatgtaca---catttttgtg i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76400345 208 + 151834684 actgtgttt-------------taggtttatcc-ttttatgg-caact-tatcacaccttac-tccctttctgcagc---tgaaaat-tccagtgtgt-gatacatatcacatcttatctaactattcaccagttgatacacgtctgggttgtatccataatattttgccattgtgaataagaatgcaagatatgaataataacatataatcatgtgcaagttattttta-- i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4074459 203 - 5279953 aatattttcatcaaccaaaaagaaatcccacacacattacagtc-act-ctccattcccccacttccctgcttcagcctatgacaacccctaT----CAGACATTGTTCtttgtttat----ccattcatctgttgacagacatttgggttatttcta---ttttctgctattataaacaacactgc----tatga----------acagtcatgtacaa--aatttttgta i dasNov3.JH568349 I 559 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C e colAng1.NW_012119221v1 1261439 10984 + 1448899 I a score=2830894.000000 s hg38.chr4_KI270787v1_alt 38048 274 + 111943 tgaacaggtattttcaattgtcttggg-atgcatctaggagtgggattgctgggtcatacagtaaatctacatgtaattattttgcaaaac-tgccagactcttttccaaagtggctacatcattctaccttcccaccagcaacttatgtgtgt---------------------------------------------------------------------------------------------------------------------------tccaatt-----tctccac-------ttcctcaccaacag--------------------------------------------------------------------ttgtta-----------------------ttgtccatctttttAAATTAT-------------------------------------------------------------------------------------------------------TTCACTTTTT-----------AATACAAAAGGAAGGAAGCATACCATGCACACTGCTGTGAAACCTG--------------------CTCTTTCACAT s panTro5.chr4 119603023 274 - 194502333 tgaacaggtattttcaattgtcttggg-atgcatctaggagtgggattgctgggtcatacagtaaatctacatgtaattattttgcaaaac-tgccagactcttttccaaagtggctacatcattctaccttcccaccagcaacgtatgtgtgt---------------------------------------------------------------------------------------------------------------------------tccaatt-----tctccac-------ttcctcaccaacag--------------------------------------------------------------------ttgtta-----------------------ttgtccatctttttAAATTAT-------------------------------------------------------------------------------------------------------TTCACTTTTT-----------AATACAAAAGGAAGGAAGCATACCATGCACACTGCTGTGAAACCTG--------------------CTCTTTCCCAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121016626 274 - 195804263 tgaacaggtattttcaattgtcttggg-atgcatctaggagtgggattgctgggtcatacagtaaatctacatgtaattattttgcaaaac-tgccagactcttttccaaagtggctacatcattctaccttcccaccagcaacgtatgtgtgt---------------------------------------------------------------------------------------------------------------------------tccaatt-----tctccac-------ttcctcaccaacag--------------------------------------------------------------------ttgtta-----------------------ttgtccatctttttAAATTAT-------------------------------------------------------------------------------------------------------TTCACTTTTT-----------AATACAAAAGGAAGGAAGCATACCATGCACACTGCTGTGAAACCTG--------------------CTCTTTCACAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4447779 274 - 17550833 tgaacaggtattttcaattgtcttggg-atgcatctaggagtgggattgctgggtcatacagtaaatctacatgtaattattttgcaaaac-tgccagactcttttccaaagtggctacatcattctaccctcccaccagcaacgtatgtgtgt---------------------------------------------------------------------------------------------------------------------------tccaatt-----tctccac-------ttcctcaccaacag--------------------------------------------------------------------ttgtta-----------------------ttgtccatctttttAAATTAT-------------------------------------------------------------------------------------------------------TTCACTTTTT-----------AATACAAAAGGAAGGAAGCATACCATGCACACTGCTGTGAAACCTG--------------------CTCTTTCACAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69320751 274 - 118206036 tgaacagctattttcaattgtcttggg-atgcatctaggagtgggattgctgggtcatacagtaaatctacatgtaattattttgcaaaat-taccagactcttttctaaagtggctacatcattctaccttcccaccagcaacgtatgtgtgt---------------------------------------------------------------------------------------------------------------------------tccaatt-----tctccag-------ttcctcaccaacag--------------------------------------------------------------------ttgtta-----------------------ttgtccatctttttAAATTAT-------------------------------------------------------------------------------------------------------TTCCCTTTTT-----------AATACAAAAGGAAGGAAGCATACCATGCACACTGCTGTGAAACCTG--------------------CTCTTTCACAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111524711 274 - 190429646 tgaataggtattttcaattgtcttggg-atgcatctaggagtgggattgctgggtcatatggtaaatctacatgtaattattttgcaaaac-tgccagactcttttccaaagtggctacatcattctaccttcccaccagcaacgtatgtgtgt---------------------------------------------------------------------------------------------------------------------------ttcagtt-----tctccac-------ttcctcaccaacag--------------------------------------------------------------------ttgtta-----------------------ttgtccatctttCTAAATTAT-------------------------------------------------------------------------------------------------------TTCCCTTTTT-----------AATACGAAAAGAAGGAAGCATACCATGCACACTGCTGTGAAACCTA--------------------CTCTTTCACAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110692851 274 - 189454096 tgaataggtattttcaattgtcttggg-atgcatctaggagtgggattgctgggtcatatggtaaatctacatgtaattattttgcaaaac-tgccagactcttttccaaagtggctacatcattctaccttcccaccagcaacgtatgtgtgt---------------------------------------------------------------------------------------------------------------------------ttcagtt-----tctccac-------ttcctcaccaacag--------------------------------------------------------------------ttgtta-----------------------ttgtccatctttCTAAATTAT-------------------------------------------------------------------------------------------------------TTCCCTTTTT-----------AATACGAAAAGAAGGAAGCATACCATGCACACTGCTGTGAAACCTA--------------------CTCTTTCACAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13260912 274 + 26754465 tgaataggtattttcaattgtcttggg-atgcatctaggagtgggattgctgggtcatatggtaaatctacatgtaattattttgcaaaac-tgccagactcttttccaaagtggctacatcattctaccttcccaccagcaacgtatgtgtgt---------------------------------------------------------------------------------------------------------------------------ttcagtt-----tctccac-------ttcctcaccaacag--------------------------------------------------------------------ttgtta-----------------------ttgtccatctttCTAAATTAT-------------------------------------------------------------------------------------------------------TTCCCTTTTT-----------AATACGAAAAGAAGGAAGCATACCATGCACACTGCTGTGAAACCTA--------------------CTCTTTCACAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4162160 274 - 5137665 tgaataggtattttcaattgtcttggg-atgcatctaggagtgggattgctgggtcatatggtaaatctacatgtaattattttgcaaaac-tgccagactcttttccaaagtggctacatcattctaccttcccaccagaaacgtatgtgtgt---------------------------------------------------------------------------------------------------------------------------ttcaatt-----tctccac-------ttcctcaccaacag--------------------------------------------------------------------ttgtta-----------------------ttgtccatctttCTAAATtat-------------------------------------------------------------------------------------------------------ttcccttttt-----------aatatgaaaagaaggaagcataccatgcacactgctgtgaaaccta--------------------ctctttcacat i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122877020 274 - 135778131 tgaataggcattttcaattgtcttggg-atgcatctaggagtgggattgctgggtcatatggtaaatctacatgtaattattttgcaaaac-tgccagactcttttccaaagtggctacatcatgctaccttcccaccagcaacgtatgtgtgt---------------------------------------------------------------------------------------------------------------------------tccaatt-----tctccac-------ttcctcaccaacag--------------------------------------------------------------------ttgtta-----------------------ttgtccatctttCTAAATTAT-------------------------------------------------------------------------------------------------------TTCCCCTTTT-----------AATACGAAAAGAAGGAAGCATACCATGCACACTGCTGTGAAACCTA--------------------CTCTTTCACAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1978843 274 + 2427316 tgaataggtattttcaattgtcttggg-atgcatctaggagtgggattgctgggtcatatggtaaatctacatgtaattattttgcaaagc-tgccagactcttttccaaagtggctacatcattctaccttcccaccagcaacgtatgtgtgt---------------------------------------------------------------------------------------------------------------------------ttcaatt-----tctccat-------ttcctcaccaacag--------------------------------------------------------------------ttgtta-----------------------ttgtccatctttCTAAATTAT-------------------------------------------------------------------------------------------------------TTCCCTTTTT-----------AATACGAAAAGAAGGAAGCATACCATGCACACTGCTGTGAAACCTA--------------------CTCTTTCATAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1272423 273 + 1448899 tgaacaggtattttcaattgtcttggg-atgcatctaggagtgggattgctgggtcatatggtaaatctacatgtaattattttgcaaa-c-tgccagactcttttccaaagtggctacatcattctaccttcccaccagcaacgtatgtgtgt---------------------------------------------------------------------------------------------------------------------------tccaatt-----tctccac-------ttcctcattgacaa--------------------------------------------------------------------tggtta-----------------------ttgtccatctttctaaattat-------------------------------------------------------------------------------------------------------ttcccttttt-----------aataCAAAAGGAAGGAAGCATACCATGCACACTGCTGTGAAACCTA--------------------GTCTTTCACAT i colAng1.NW_012119221v1 I 10984 C 0 s calJac3.chr3 52993905 274 - 190850796 taaacgggtattttcaattgtctcggg-atgcatctaggagtgtgattgct-ggtcatacagtaaatctacatgtaattatttcgcaaaac-tgctggactctttatgaaagtggctacatcattctaccttcccaccaggaacgtatgcacat---------------------------------------------------------------------------------------------------------------------------tccagtt-----tctccac-------atcctcaccaacag-------------------------------------------------------------------tttgtta-----------------------ttgttcatctttctaaATTAt-------------------------------------------------------------------------------------------------------ttcccttttt-----------aatacaaaaggaaggaagcatactatgcacactgctgtgaaacctg--------------------ctctttcacat i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8157774 271 - 15139346 taaacaggtattttcaattgtcttggg-atgcatctaggagtgtgactgct-ggtcatacagtaaatctacatgtaattattttgcaaaac-tgccagactct---tgaaagtggctacatcattctaccttcccaccagcaatatatgtgcat---------------------------------------------------------------------------------------------------------------------------tccagtt-----tctccac-------gtcctcactaacag-------------------------------------------------------------------tttgtta-----------------------tttttcatctttctaaAttat-------------------------------------------------------------------------------------------------------ttcccttttt-----------aatacgaaaggaaggaagcataccatgcacactgctgtgaaacctg--------------------ctctttcacat i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6941622 275 - 7304997 taaacagatattttcaattgtcttggg-atatatcaaggagtatgattgct-ggtcatacagtaaatctacatgtaattattttgcaaaacttgccagactctttttgaaagtggctacatcattctaccgtcccaccagcgatatacgtgtat---------------------------------------------------------------------------------------------------------------------------tccagtt-----tctccac-------gtcctcaccaacag-------------------------------------------------------------------tttatta-----------------------tttttcatctttctaaATTAT-------------------------------------------------------------------------------------------------------TTCCCTTTTT-----------AATACAAAAGGAAGGAAGCACACCATTGACACTGCTGTGAAACCTG--------------------CTCTTTCACAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9359745 275 - 11631747 taaacaggtactttcaattgtcttggg-atgcatctaggagtgtgattgctgggtcatacagtaaatctacatgtaattattttgtaaaac-tgccagactctttttgaaagtggctacatcattctaccttcccaccagcaacatatgggtat---------------------------------------------------------------------------------------------------------------------------tccagtt-----tctccac-------gtcctcaccaacag-------------------------------------------------------------------tttgttc-----------------------ttgttcatctttCTAAATTAT-------------------------------------------------------------------------------------------------------TTCCCGTTTT-----------AATACAAAAGGAAGGAAGCATACCATGCACACTGCTGTGAAACCTG--------------------CTCTTTCACAT i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76400553 597 + 151834684 taaacacata-tttctattctcatgga-gcatatct--gcgtggaatatctcagtcacatgataattctacattcgacgtttttgaggaac-tggcagattgtgttccaagcactcagcctcgttttagattccc-ccaccaatgtgcatgtgtgaatctctccaaacctcactgacagctgcttttgAAAATCCCACAACCCTTtgtcctagtcagggtttgtgttcctgcacaaaacatcatggccaagaagcaagttgtggaggaaagggtttattcagcttacactttccacattgctgttcatcaccaaaggaagtcaggcctggaagtcatacagggtaggaacctggagataggaattgatgcagaagctatggagggatgttacttactggcttgctgcccctggcttgctcagcttgctttcttatagaacccgggactgccagctagggatggcatcacccacaatgcccaccccccattactaattgagaaaatgcctcacagctggaCACACAAAAACAGCCTTTATACCCTTTTT-----------AAGACAAAAGGAAGGAGGTATA--ATGACATATACTGTGGAAACTG--------------------ATATTTTTCAT i mm10.chr5 C 0 I 205 s dasNov3.JH568349 4074662 288 - 5279953 tgagcatgtattttcaattctcttgggtagatacctggaagtggtatttctgggtcatatggtaactctatatttaact-ttttaagagac-tgccagactagtttc--------------cattttacattctcgccagcaatgtatatgggt---------------------------------------------------------------------------------------------------------------------------tccattc-----tctccaaa------ttgttaaacaatac--------------------------------------------------------------------ttgcta-----------------------ttgtcaatcttcttgag-----------------------------------------------------------------------------------------------------------taCCTCCTTTaaaaaaaaaaaaaaaaaaaaagaaggaaaCATACACTGCACACTAATCCAAACCTTGTTTGTTTGTTTTTCTTTCTTTTTTTTCACAT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C a score=895673.000000 s hg38.chr4_KI270787v1_alt 38322 83 + 111943 AGTATCTTGGGCAGATTTT-ACTATCTGGAAAACAGAAAGGACCTGTTTCTCGGAAGCAGCCTCAGCTGGTACAGAAGAAGAGG s panTro5.chr4 119603297 83 - 194502333 AATATCTTGGGCAGATTTT-GCTATCTGGAAAACAGAAAGGACCTGTTTCTGGGAAGCAGCCTCAGCTGGTACAGAAGAAGAGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121016900 83 - 195804263 AATATCTTGGGCAGATTTT-GCTATCTGGAAAACAGAAAGGACCTGTTTCTGGGAAGCAGCCTCAGCTGGTACAGAAGAAGAGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4448053 83 - 17550833 AATATCTTGGGCAGATTTT-GCTATCTGGAAAACAGAAAGGACCTGTTTCTGGGAAGCAGCCTCAGCTGGTACAGAAGAAGAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69321025 83 - 118206036 ACTATCTTAGGGAGATTTT-CCTATCTGGAAAACAGAAAGGACCTGTTTCTGGGAAGCAGCCTCAGCTGGTACAGAGGAAGAGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111524985 83 - 190429646 AATATCTTAGGGAGATTTT-CCTATCTGGAAAACAGAAAGGACCTGTTTCTGGGAAGCAGCCTCAGCTGGTACAGAGGAAGGGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110693125 83 - 189454096 AATATCTTAGGGAGATTTT-CCTATCTGGAAAACAGAAAGGACCTGTTTCTGGGAAGCAGCCTCAGCTGGTACAGAGGAAGGGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13261186 83 + 26754465 AATATCTTAGGGAGATTTT-CCTATCTGGAAAACAGAAAGGACCTGTTTCTGGGAAGCAGCCTCAGCTGGTACAGAGGAAGGGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4162434 83 - 5137665 aatatgttagggagatTTT-CGTATCCGGAAAACAGAAAGGACCTGTTTCTGGGAAGCAGCCTCAGCTGGTACAGAGGAAGGGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122877294 83 - 135778131 AATATCTTAGGGAGATTTT-CCTATCTGGAAAACAGAAAGGACCTGTTTCTGGGAAGCAGCCTCAGCTGGTACAGAGGAAGGGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1979117 83 + 2427316 AATATCTTAGGGAGATTTT-CCTATCTGGAAAACAGAAAGGACCTGTTTCTGGGAAGCCGCCTCAGCTGGTACAGAGGAAGGGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1272696 83 + 1448899 AATATCTTAGGGAGATTTT-CCTATCTGGAAAACAGAAAGGACCTGTTGCTGGGAAGCAGCCTTAGCTGGTACAGAGGAAGGGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52994179 83 - 190850796 aatatcttagggagctttt-cctatcTGGAAAACAGAAAGGACCTGTTTCTGGGAAGCAGCCTCAGCTGGTACGGAGGAAGGAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8158045 80 - 15139346 agtatcttagggagctttt-cctatcTGGAAAACAGAAAGGACCTGTTTCTGGGAAGCAGCCTCAGCTGGTACAGAGGA---AG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6941897 83 - 7304997 AGTATCTTAGGGAGCTTTT-CCTATCTGGAAAACAGGAAGAACCTGTTTCTGGGAAGCAGCCTCAGCTGGTACAGAGGAAGAAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9360020 83 - 11631747 AATATCTTAGGGAGCTTTT-CCTATCTGGAAAACAGAAAGGACCTGTTTCTGGGAAGCAGCCTCAGCTGGTACAGAGGAAGAAG i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4074950 79 - 5279953 GCTATATTGGAGATTTTTTCCCTGTATAAAATACAGAAAGGACCTCTTTCTGGGGAA-----GCAGCTGGTACAGGGGAGGAAG i dasNov3.JH568349 C 0 I 58 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e mm10.chr5 76401150 205 + 151834684 I e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C a score=1138893.000000 s hg38.chr4_KI270787v1_alt 38405 154 + 111943 ATGTGA-GGGGAACCCTGAATGCACGTGTG------CATGCA---CT----------CACAC--ACACACATTAATACA--------------------------------------------------------------------------------------------atatagtatatataatatata--tgtgtataatatatatactatataacacacta--tactatatatacactatatatacatactatTTCATTTGTTCCA--G s panTro5.chr4 119603380 156 - 194502333 ATGTGA-GGGGAACCCTGAATGCATGTGTG------CATGCA---CT----------CACAC--ACACACATTAATACA--------------------------------------------------------------------------------------------atatagtatatataatatatacatgtgtataatgtatatactatataacacacta--tactatatatacactatatatacatactatTTCATTTGTTCCA--G i panTro5.chr4 C 0 C 0 s panPan2.chr4 121016983 154 - 195804263 ATGTGA-GGGGAACCCTGAATGCATGTGTG------CATGCA---CT----------CACAC--ACACACATTAATACA--------------------------------------------------------------------------------------------atatagtatatataatatata--tgtgtataatgtatatactatataacacacta--tactatatatacactatatatacatactatTTCATTTGTTCCA--G i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4448136 156 - 17550833 ATGTGA-GGGGAACCCTGAATGCATGTGTG------CATGCA---CT----------CACAC--ACACACATTAATACA--------------------------------------------------------------------------------------------atatagtatatataatatatatatgtgtataatatatatactatataacacacta--tactatatatacactatatatacatactatTTCATTTGTTCCA--G i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69321108 166 - 118206036 ATGTGA-GGGGAACCCTGAATGCATGTGTG------CATGca---ctcacacacacacacac--acacacacTAATGCA--------------------------------------------------------------------------------------------atatagtatatataatatatatgtgtgtataatatatatactatataacacacga--tactatatatacactatatatacatactatTTCATTTGTTCCA--G i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111525068 155 - 190429646 ATGTGA-GGGGAACCCTGAATGCATGTGTG--------TGCA---TG----------CACAC--ACACACATTAATACA--------------------------------------------------------------------------------------------atatagtatatataatatatatgcgtgtataatatatatactatataacaccata--tagtatatatacactgtatatacatactatTTCATTTGTTCCAC-A i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110693208 155 - 189454096 ATGTGA-GGGGAACCCTGAATGCATGTGTG--------TGCA---TG----------CACAC--ACACACATTAATACA--------------------------------------------------------------------------------------------atatagtgtatataatatatatgcgtgtataatatatatactatataacaccata--tagtatatatacactgtatatacatactatTTCATTTGTTCCAC-A i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13261269 155 + 26754465 ATGTGA-GGGGAACCCTGAATGCATGTGTG--------TGCA---TG----------CACAC--ATACACATTAATACA--------------------------------------------------------------------------------------------atatagtatatataatatatatgcgtgtataatatatatactatataacaccata--tagtatatatacactgtatatacatactatTTCATTTGTTCCAC-A i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4162517 155 - 5137665 ATGTGA-GGGGAACCCTGAATGCATGTGTG--------TGCA---TG----------CACAC--ATACACATTAATACA--------------------------------------------------------------------------------------------atatagtatatataatatatacgagtgtataatatatatactatgtaacaccata--tagtatatatacactgtatatacatactatTTCATTTGTTCCAC-A i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122877377 155 - 135778131 ATGTGA-GGGGAACCCTGAATGCATGTGTG--------TGCA---TG----------CACAC--ACACACATTAATACA--------------------------------------------------------------------------------------------atatagtttatataatatatatgtgtgtataatatatatactatataacacacta--tagtatatatacactgtatatacatactatTTCATTTGTTCCAC-A i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1979200 155 + 2427316 ATGTGA-GGGGAACTCTGAATGCATGTGTG--------TGCA---TG----------CACAC--ACACACATTAATACA--------------------------------------------------------------------------------------------atatagtatatataatatatacgagtgtataatatatatactatataacaccata--tagtatatatacactgtatatacatactatTTCATTTGTTCCAC-A i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1272779 148 + 1448899 ATGTGAGGGGGAACCCTGAATGCATGTGTG--------TGCA---TG----------CACAC--ACACACATTAATACA--------------------------------------------------------------------------------------------atatagtatatataatatatac--------actatatacactatgtaacacacta--tagtatatatacactgtatatacatactatTTCATTTGTTCCAC-A i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52994262 242 - 190850796 ATGTGA-GGGGAACCCTGAATGCACACAGGTGTGCACATGCACACCA----------CACACAAACACACATtaatatatca----tatataatat---atagtatatattatataaatgtgtatgtattata-----ta-----aatataatatagttgatactaac--aatatagtatatattatacaaatgtgtatataacatatatactatatagcatacta--taatatatatatactatatatacataCTATTTCATTTGTTTCACAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8158125 173 - 15139346 ATGTGA-GGGGAATCCTGAACGCACACATGGGCACACATGCA---CA----------AATGCAAACACACATTAatata---------------at---atagtatataat------------------------------------------------------------atatagtatatattatacacatgtgtatataacatatatactatatagcatacta--taatata-------tatatatacataCTATTTCATTTATTCCACAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6941980 249 - 7304997 ATGTGA-GGGGAACCCTGAacgcacacatgtgcacacatgca---ca----------cacacaaacacacaTTAatgtattaatataatatagtatataatagtatatattatataaatgtgtatg-----tattatata-----aatataatacagttgatactaacctaatatagtatatattatacaaatgtgtatataacatatatactatatagcatacaa-ttaatatatatatactatatatacatactatTTCATTTGTTCCACAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9360103 236 - 11631747 ATGTGA-GGGGAACCCTGAATGCACACATGTGcacacatgca---ca----------cac----acacacaTTAatataata-tagtatataatac---atagtatatattatataaatgtg----------------tattataaatataatatagttgatattaacataatatagtatatattatacaaatatatgtataacatatatattgtatagcatactattttatatatatatactatatatacatactatTTCATTTGTTCCACAG i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e mm10.chr5 76401150 205 + 151834684 I e dasNov3.JH568349 4075029 58 - 5279953 I e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C a score=768228.000000 s hg38.chr4_KI270787v1_alt 38559 75 + 111943 TTTTCTGTATCACAAACA--CTCACACAGAGGCCCCTGAAAGGCTCCAAGAACACCATCAATAAACTACTTATCTGc s panTro5.chr4 119603536 75 - 194502333 TTTTCTGTATCACAAACA--CTCTCACAGAGGCACCTGAAAGGCTCCAAGAACACCATCAATAAACTACTTATCTGc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121017137 75 - 195804263 TTTTCTGTATCACAAACA--CTCTCACAGAGGCACCTGAAAGGCTCCAAGAACACCATCAATAAACTACTTATCTGc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4448292 75 - 17550833 TTTTCTGTATCACAAACA--CTCACACAGAGGCACCTGGAAGGCTCCAAGAACACCATCAATAAACTACTTATCTGc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69321274 71 - 118206036 TTTTCTGTATCACAAACA------CACAGAGGCCCCTGAAAGGCTCCAAGAACACCATCAACAAACTGTTTATCTGc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111525223 74 - 190429646 GTTTCTGTATCACAAACG--TTTACACAGAGGCCCCTGAAAGGCTCCAAGAACACCATCAA-AAACTACTTATCTGc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110693363 74 - 189454096 GTTTCTGTATCACAAACG--TTTACACAGAGGCCCCTGAAAGGCTCCAAGAACACCATCAA-AAACTACTTATCTGc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13261424 74 + 26754465 GTTTCTGTATCACAAACG--TTTACACAGAGGCCCCTGAAAGTCTCCAAGAACATCATCAA-AAACTACTTATCTGc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4162672 74 - 5137665 GTTTCTGTATCACAAACG--TTTACACAGAGGCCCCTGAAAGGCTCCAAGAACACCATCAA-AAACTACTTATCTGc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122877532 74 - 135778131 GTTTCTGTATCACAAACA--CTCACACAGAAGCCCCTGAAAGGCTCCAAGAACACCATCAA-AAACTACTTATCTGc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1979355 74 + 2427316 GTTTCTGTATCACAAACG--TTTACACAGAGGCCCCTGAAAGGCTCCAAGAACACCATCAA-AAACTACTTATCTGc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1272927 74 + 1448899 GTTTCTGTATCACAAACG--CTCGCACAGAGGCCCCTGAAAGGCTCCAAGAACACCATCAA-AAACTACTTATCTGc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52994504 75 - 190850796 TTTTCTGTATCACAAACA--CTCACACAGAGGCCCCTGAAAGGCTCCAAGAGCACCATCAACAAACTACTTATCTGc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8158298 75 - 15139346 TTTTCTGTATCACAAACA--CTCACACAGAGGCCCCTGAAAGGCTCCAAGAGCACCATCAACAAACTACTTATCTGc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6942229 75 - 7304997 TTTTCTGTATCACAAACA--CTCACACAGAGGCCCCTGAAAGGCTCCAAGAGCACCATCAACAAACTACTTATCTTc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9360339 75 - 11631747 TTTTCTGTATCACAAACC--CTCACACAGAGGCCCCTGAAAGGCTCCAAGAGCACCATTAACAAACTACTTATCTGc i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4075087 77 - 5279953 TTTCTTGTATTAAACACAGACACACACAGAAGTCCCAGAGAGTTCCCCAGAACATGGACTGAAAACTACTTACCTGC i dasNov3.JH568349 I 58 I 70 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e mm10.chr5 76401150 205 + 151834684 I e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C a score=5510746.000000 s hg38.chr4_KI270787v1_alt 38634 582 + 111943 tgtaatcgcagcactttgggaggccaaggtgggcagatcacttgaggtcaagagtttgggaccagcctggctaaaatggtgaaaccccatctttactaaaaatacaaaaattagccgggcatggtggcaggtgcctgtagtcccagctact-------------------caggaggctgaggcaggagaatcacttgaacccaggaggtgaaggttgcagtgaacagagatcgtgcaactgcactctccagcctgggtgacagagcaagactccgtctcaaaaaaa-aaaaaaaaa----------------------------------------------GCTACttatctggttcatccctcacttgacatacaaggaaacca-----agtccagagaggccatgtgaccttcctaggTAGACTGgtttgccgaagctattgtaataaagtattgtaaactggatggcttaaacaacagacatttattatct-ggggttctggaggctggacatccaaaatccaggtgtcagcagggttgtgagagaaaatctctcttctgaccgctgtgagag-aaaatctgttgcaggcctctcccctggcttctggaagttggcaagcaatctttggagttccttggcttccagaagc s panTro5.chr4 119603611 628 - 194502333 tgtaatcacagcactttgggaggccaaggtgggcagattacttgaggtcaagagttcgggaccagcctggctaaaatggtgaaaccccatctttactaaaaatacaaaaattagccaggcatcgtggcaggtgcctgtagtcccagctact-------------------caggaggctgaggcaggagaatcacttgaacccaggaggtgaaggttgcagtgaacagagatcgtgcaactgcactctccagcctgggtgacagagcaagactctgtctcaaaaaaa-aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGCTACttatctggttcatccctcacttgacatgcaaggaaacca-----agtccagagaggccatgtgaccttcctaggTAGACTGgtttgctgaagctattgtaataaagtattgtaaactggatggcttaaacaacagacatttattatct-ggggttctggaggctagacatccaaaatccaggtgtcagcagggttgtgagagaaaatctctcttctgaccgctgtgagag-aaaatctgttgcaggcctctcccctggcttctggaagttggcaagcaatctttggagttccttggcttccagaagc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121017212 604 - 195804263 tgtaatcacagcactttgggaggccaaggtgggcagatcacttgaggtcaagagttcgggaccagcctggctaaaatggtgaaaccccatctttactaaaaatacaaaaattagccaggcatggtggcaggtgcctgtagtcccagctact-------------------caggaggctgaggcaggagaatcacttgaacccaggaggtgaaggttgcagtgaacagagatcgtgcaactgcactctccagcctgggtgacagagcaagactccgtctacaaaaaa-aaaaaacaa------------------------aaaaaaaaaaaaaaaaaaaaaGACTACttatctggttcatccctcacttgacatgcaaggaaacca-----agtccagagaggccatgtgaccttcctaggTAGACTGgtttgccgaagctattgtaataaagtattgtaaactggatggcttaaacaacagacatttattatct-ggggttctggaggctagacatccaaaatccaggtgtcagcagggttgtgagagaaaatctctcttctgaccgctgtgagag-aaaatctgttgcaggcctctcccctggcttctggaagttggcaagcaatctttggagttccttggcttccagaagc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4448367 582 - 17550833 tgtaatcgcagcactttgggaggccaaggtgggcagatcacttgaggtcaagagttcgggaccagcctggctaaaatggtgaaaccccatctttactaaaaatacaaaaattagccgggcatgggggcaggtgcctgtagtcccagctact-------------------caggagggtgaggcaggagaatcacttgaacccaggaggtgaaggttgcagtgaacagagatcgtgcaactgcactctccagcctgggtgacagagcaagactctgtctcaaaaaaa-aaaaaaaaa----------------------------------------------GCTAattatctggttcatccctcacttgacatgcaaggaaacca-----agtccagagaggccatgtgaccttcctaggTAGACTGgtttgccaaagctattgtaataaagtattgtaaactggatggcttaaacaacagacatttattatct-ggggttctggaggctagacatccaaaatccaggtgtcagcagggttgtgagagaaaatctctcttctgaccgctgtgagag-ataatctgttgcaggcctctcccctggcttctggaagttggcaagcaatctttggagttccttggcttccagaagc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69321345 598 - 118206036 tgtaattgcagcattttgggaggccaaggcaggcagatcacttgaggtcaacagttcgggaccagcctggccaaaatgatgaaacctcatctttactaaacatacaaaaattagctgggcatggtggcaggtgcctgtagtcccagctact-------------------caggaggctgaggcaggagaatcgcttgaacccaggaggtgaaggttgcagtgaacagaaatcgtgcaactgcactctccagcctgggtgacagagcaaaactccgtctcaaaaaaa-aaaaaaaaa-----------------------------------aaaaaaaaaaaGCTACttacctggttcatccctcacttgacatgcaaggaaaccaagtccagtccagagaggccatgtgaccttcctaggTAGACTGgtttgctgaagctgttgtaataaagtattgtaaactggatggcttaaacaacagacatttattatct-ggagttctgaaggctagacatccaaaatccaggtgtcagcagggttgtgagagaaaatctgtcttctgaccactgtgagag-aaaatctgttgcaggcctctcccctggcttctggaagttggcaagcaatctttggagttccttggcttctagaagc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111525297 593 - 190429646 tgtaatcccagcactttgggaggccaaggcaggcacatcacttgaggtcaagagtttgggaccagcctggccaaaatcatgaaaccccatctttactaaaaatataaaaattagccgggtatggtggcaggtgcctgtagtcccagctact-------------------caggaggctgaggcaggagaatcgcttgaacccgggaggtgaaagttgcagtgaacagaggtcatgcaactgcactctccagcctgggtgacagagcaagacgccgtctcaaaaaac-aaaaaaaaa-------------------------------------aacaaaaCAGCTACttatctggttcattcctcacttgacttgcaaggaaacca-----agcccagagaggccatgtgacctttctaggTAGACtggtttgccgaagctgttgtaataaagtatcgtaaactggatggcttaaacaacagacatttatcatctcagagttctggaggttagatgtccaaaatccaggtgtcaacagggttgtgagagaaaatctctcttctgaatgctgtgagagaaaaatctgttgcaggcctctcccctggcttctgggagttggcaagcaatctttggagttccttggcttccagaagc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110693437 594 - 189454096 tgtaatcccagcactttgggaggccaaggcaggcacatcacttgaggtcaagagttcgggaccagcctggccaaaatcatgaaaccccatctttactaaaaatataaaaattagccgggcatggtggcaggtgcctgtagtcccagctact-------------------caggaggctgaggcaggagaatcgcttgaacccaggaggtgaaagttgcagtgaacagaggtcatgcaactgcactctccagcctgggtgacagagcaagactccgtctcaaaaaacaaaaaaaaaa-------------------------------------aacaaaaCAGCTACttatctggttcattcctcacttgacttgcaaggaaacca-----agcccagagaggccatgtgacctttctaggTAGACTGgtttgccgaagctgttgtaataaagtatcgtaaactggatggcttaaacaacagacatttatcatctcagagttctggaggttagatgtccaaaatccaggtgtcaacagggttgtgagagaaaatctctcttctgaatgctgtgagagaaaaatctgttgcaggcctctcccctggcttctgggagttggcaagcaatctttggagttccttggcttccagaagc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13261498 594 + 26754465 tgtaatcccagcactttgggaggccaaggcaggcacatcacttgaggtcaagagttcgggaccagcctggccaaaatcatgaaaccccatctttactaaaaatataaaaattagctgggcatagtggcaggtgcctgtagtcccagctact-------------------caggaggctgaggcaggagaatcgcttgaacccgggaggtgaaagttgcagtgaacagaggtcatgcaactgcactctccagcctgggtgacagagcaagactccgtctcaaaaaacaaaaaaaaaa-------------------------------------aacaaaaCAGCTACttatctggttcattcctcacttgacttgcaaggaaacca-----agcccagagaggccatgtgacctttctaggTAGACtggtttgccgaagctgttgtaataaagtatcgtaaactggatggcttaaacaacagacatttatcatctcagagttctggaggttagatgtccaaaatccaggtgtcaacagggttgtgagagaaaatctctcttctgaatgctgtgagagaaaaatctgttgcaggcctctcccctggcttctgggagttggcaagcaatctttggagttccttggcttccagaagc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4162746 590 - 5137665 tgtaatcccagcactttgggaggccaaggcaggcacatcacttgaggtcaagagttcgggaccagcccggccaaaatgatgaaaccccatctttactaaaaatataaaaattagccgggcatggtggcaggtgcctgtagtcccagctact-------------------caggaggctgaggcaggagaatcgcttgaacccgggaggtgaaagttgcggtgaacagaggtcatgcaactgcactctccggcctgggtgacagagcaagactccatctcaaaaaac---aaaaaaa-------------------------------------aacaaaaCAGCTACTTA-ctggttcattcctcacttgacttgcaaggaaacca-----agcccagagaggctatgtgacctttctaggTAGACtggtttgccgaagctgttgtaataaagtatcgtaaactggatggcttaaacaacagacatttatcatctcagagttctggaggttagatgtccaaaatccaggtgtcaacagggttgtgagagaaaatctctcttctgaatgctgtgagagaaaaatctgttgcaggcctctcccctggcttctgggagttggcaagcaatctttggagttccttggcttccagaagc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122877606 593 - 135778131 tgtaatcgcagcactttgggagtccaaggcaggcagatcacttgaggtcaagagttcgggaccagcctggccaaaatggtgaaaccccatctttactaaaaatacaaaaattagctgggcatggtggcaggtgcctgtagtcccagctact-------------------caggaggctgaggcaggagaatcacttgaacccaggaggtgaaagttgcagtcaacagagatcatgcaactgcactctccagcctgggtgacagagcaagactccgtctcaaaaaaa-caaaaaaaa-------------------------------------aacaaaaCAGCTACttatctggttcattcctcacttgacttgcaaggaaacca-----agcccagagaggccatgtgaccttcctaggTAGACTGgtttgccgaagctgttgtaataaagtatcataaactggatggcttaaacaacagacatttatcatctcagagttctggaggttagatgtccaaaatccaggtgtcagcagggttgtgagagaaaatctctcttctgaacgctgtgagagaaaaatctgtcgcaggcctctcccctggcttctgggagttggcaagcaatctttggagttccttggattccagaagc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1979429 593 + 2427316 tgtaatcccagcactttgggaggccaaggcaggcacatcacttgaggtcaagagttcgggaccagcctggctaaaatgatgaaaccccatctttactaaaaatataaaaattagccgggcatggtggcaggtgcctgtactcccagctact-------------------caggaggctgaggcaggagaatcgcttgaacccgggaggtgaaagttgcagtgaacagaggtcatgcaactgcactctccggcctgggtgacagagcaagactctgtctcaaaaaaa-aaaaaaaaa-------------------------------------aacaaaaCAGCTACttatctggttcattcctcacttgacttgcaaggaaacca-----agcccagagaggccatgtgacctttctaggTAGACtggtttgccgaagctgttgtaataaagtatcgtaaactggatggcttaaacaacagacatttatcatctcagagttctggaggttagatgtccaaaatccaggtgtcaacagggttgtgagagaaaatctctcttctgaatgctgtgagagaaaaatctgttgcaggcctctcccctggcttctaggagttggcaagcaatctttggagttccttggcttccagaagc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1273001 580 + 1448899 tgtaatcgcagcactttgggaggccaaggcaggcatatcactttaggtcaagagttcgggaccagcctggccaaaatggtgaaaccccatctttactaaaaatacaaaaattagctgggcatggtggcaggtgcctgtagtcccagctact-------------------caggaggctgaggcaggagaatcgcttgaacccgggaggtgaaagttgcagtgaacagagatcatgcaactgcactctccagcctgggtgacagagcaagactccgtctcaaaaaaa-------------------------------------------------aaaaaCAGCTACttatcttgttcattcctcacttgacttgcaaggaaacca-----aacccagagaggccatgtgatcttcctaggTAGACtggtttgccgaagctgttgtaataaagtatcataaactgcatggcttaaacaacagacatttatcatctcagagttctggaggttagatgtccaaaatccaggtgtcagcagggttgt--gagaaaatctctcttctgaacactgtgagagaaaaatctgttgcaggcctctcccctggcttctgggagttggcaagcaatctttggagttccttggcttccagaagc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52994579 577 - 190850796 tgtaatcacagcacttttggaggccgaggcaggtggatcacttgaggtcaggaattcaggaccgtcctggtcaacatggtgaaaacccatctctactaaaaatacaaaaattagcacag----gtggtgcatgcctgtgatcccagctact-------------------caggaggctgaggcaaaagaatcacttgaacccgggaggcaaaggttgcagtgagctgagatcgtgcaactgca--ctccagcctgggtgacagagtgagactccatctcaaaaaaa-TTTTTTTGA---------------------------------------------AGTTGCTTATCTGGTTCATCCCTCACTTGATGCACAAGGAAGCCA-----AGCCCAGTGAAGCCATGTGACCTTCCTAGGTAGACtggttcactgaggctatcgtaataaacttttgtaaactaggtgacttaaacagcagacatttattacctcagggttctggatgccagaagtccaaaatccaggtgtcagcagggttgtgagagaaaatctct-ttctgatgattgtgagag-aaaatctattgcaggcctcttccctggcttctgggagttggcaagcaatctttggagtcccttggcttccagaagc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8158373 597 - 15139346 tgtaaccacagcacttttggaggccaaggcaggtggattacttgaggtcaggaattcaggacagtcctggccaacatggtgaaaacccatctctactaaaaatacaaaaattaacacag----ctggcacatgcctgtggtcccagctactgaggcaaaataatcacttgaaggaggctgaggcaaaagaatcacttgaaccccggaggcaaaggttgcagtgagctgagatcgtgcaactgca--ctccagcctggatgacagagtgaggctccatctcaaaaaTT-TTTTTAAAA---------------------------------------------AGCTGCttatctggttcatccctcacttgatgcacaaggaaacca-----agcccagtgaggccatgtgaccttcctaggTAGACtggtttgctgaggctattataacaatgtgttgtaaattaggtgacttaaataacagatatttattatctcagggttctggaggctagaagtccaaaatccaggtgtcagcagggttgtgagagaaaatctctcttctgataattgtgagag-aaaatctattgcaggcctcttccctgccttttgggagttggcaagcaatctttggagtctcttggcttccagaagc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6942304 578 - 7304997 tgtaatcacagcacttttggaggccgaggcaggtggattacttgaggtcaggaattcaggaccgtcctggtcatcatggtgaaaacccatctctactaaaaatacaaaaattagtacag----gtggcgcatgcctgtgatcccagctact-------------------caggacgctgaggcaaaagaattacttgaacccgggaggcaaatgttgcagtgagctgagatcatgcaactgca--ctccagcctggatgacagagcgagactccatctcaaaaaaa-TTTTTAAAA---------------------------------------------AGCTGCttatctggttcatccctcacttgatgcacaaggaaacca-----agcccagtgaggccatgtgaccttcctaggTAGACtggttcactgaggctattgtaataatgcattgtaaactaggtggcttaaataacagacatttattatctcagggctctggaggctagaagtccaaaatccaggtgtcagcagggttgtgagagaaaatctctcttctgatgattgtgggag-aaaatctactgcaggcctcttccctggcttctgggagttggtaagcaatctttggagtctcttggcttccagaagc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9360414 578 - 11631747 tgtaatcacagcacttttggaggccaaggcaggtggatcacttgaggtcaggaattcaggaccatcctggtcaacatggtgaaaacccatctctactaaaaatacaaaaattagcacag----gtggtgcatacctgtgatcccagctact-------------------caggaggctgaggcaaaagaatcacttgaacccgggaggcaaaggctgcagtgagctgagattgtgcaactgca--ctccagcctgggtgacagagcaagactccatctcaaaaaTT-TTTTTAAAA---------------------------------------------AGCTACATATCTGGTTCATCCTTCACTTAATGCACAAGGAAACCA-----AGCCCAGCGAGGCCATGTGACCTTCCTAGGTAGACTGgtttgctgaggctattgtaataatgtattgtaaactaggtggcttaaacaacagacatttattacctcagggttctggaggctagaagtccaaaatccaggtgtcagcagggttgtgagagaaaatctctcttctgatggttgtgagag-aaaatctgttgcaggcctcttccctagcttctgggagttggcgagcaatctttggagttccttggcttccagaagc i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e mm10.chr5 76401150 205 + 151834684 I e dasNov3.JH568349 4075164 70 - 5279953 I e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47960863 0 + 63241923 C a score=2035230.000000 s hg38.chr4_KI270787v1_alt 39216 203 + 111943 atcactctgatccctgccatcaggttcacatggctctctccctgtgtgggtctttgtgtgcaaatttccccttttaattaagacacccatc-gtattggagtaggatgcagccaaatgctctca-tcttaacttgattccctctgtgaagaccctgtttttaaatatagtcgcgttctggggtgctgggggctgggactgcaata s panTro5.chr4 119604239 202 - 194502333 atcactctgatccctgccatcaggttcacatggctctctccctgtgtgggtctttgtgtgcaaatttctccttttaattaagacacccatt-gtactggagtaggatgcagccgaatgctctca-tcttaacttgattccctctgtgaagacactgtttttaaatatagtcgtgttctgaggtgctgggg-ctgggactgcaata i panTro5.chr4 C 0 C 0 s panPan2.chr4 121017816 202 - 195804263 atcactctgatccctgccatcaggttcacatggctctctccctgtgtgggtctttgtgtgcaaatttctccttttaattaagacacccatt-gtactggagtaggatgcagccgaatgctctca-tcttaacttgattccctctgtgaagacactgtttttaaatatagtcgtgttctgaggtgctgggg-ctgggactgcaata i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4448949 202 - 17550833 atcactctgatccctgccatcaggttcacatggctctctccctgtgtgggtctttgtgtgcaaatttccccttttaattaagacacccatc-gtactggagtaggatgcagctgaatgctctca-tcttaacttgattccctctgtgaagacgctgtttttaaatatagtcgtgttctgaggtgctgggg-ctgggactgcaata i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69321943 203 - 118206036 atcactctgatccctgccatcaggttcagatggctgtctccctgtgtgggtctttgtgtgcaaatttcccctttttattaagacacccatt-gtattggagtaggatgcagccaaatgccctca-tcttaacttgattccctctgtgaagaccctgtttttaaagatagtcgcattctgaggtgctgggggctgggactgcagta i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111525890 203 - 190429646 atcactctgatccctgccgtcaggttcacatggctctctctctgtgtgggtctctgtgtccaaatttcccccttttattaagacacccatc-gtattggactaggatgcacccgaatgccctca-tcttaacttgattccctctataaagacccagttttaaaatatagtcatgttctgaggtactgggggctgggactgcaatg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110694031 203 - 189454096 atcactctgatccctgccgtcaggttcacatggctctctccctgtgtgggtctctgtatccaaatttccctcttttattaagacacccatc-gtattggactaggatgcacccgaatgccctca-tcttaacttgattccctctataaagacccagttttaaaatatagtcatgttctgaggtactgggggctgggactgcaatg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13262092 203 + 26754465 atcactctgatccctgccgtcaggttcacatggctctctccctgtgtgggtctctgtgtccaaatttcccccttttattaagacacccatc-gtattggactaggatgcacccaaatgccctca-tcttaacttgattccctctataaagacccagttttaaaatatagtcatgttctgaggtactaggggctgggactgcaatg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4163336 203 - 5137665 atcactctgatccctgccgtgaggttcacatggctctctccctgtgtgggtctctgtgtccaaatttcctccttttattaagacacccgtc-gtattggactgggatgcacccgaatgccctca-tcttaacttgattccctctataaagacccagttttaaaatatagtcatgttctgaggtactgggggctgggactgcaatg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122878199 203 - 135778131 atcactctgatccctgctgtcaggttcacatggctctctccctgtgtgggtctctgtgtccaaatttcccccttttattaagacacccatc-gtattggactaggatgcacccgaatgccctca-tcttaacttgattccctctgtaaagacccagtttttaaatatagtcacattctgaggtactgggggctgggactgcaatg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1980022 203 + 2427316 atcactctgatccctgccgtcaggttcacatggctctctccctgtgtgggtctctgtgtccaaatttcccccttttattaagacacccatc-gtattggactaggatgcacccgaatgccctca-tcttaacttgattccctctataaagacccagttttaaaatatagtcatgttctgaggtactgggggctgggactgcaatg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1273581 202 + 1448899 atcacgctgatccctgccatcaggttcacatggctctctccctgtgtgggtctctgtgtccaaatttcc-ccttttattaagacacccatt-gtattagactaggatgcacccgaatgccctca-tcttaacttgattccctctgtaaagacccagtttttaaatatagtcacgttctgaggtgctgggggctgggactgcaatg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52995156 203 - 190850796 atcactctgatccctgccttcaggttcacatggctgtctccttgtgtggatctctgtgtccaaatttcccctttttataaagacacccatc-atattagactaggatgtacccaaatgccctca-ttttaacttgattccctctgtaaagaccctgtatttagatatagtcacggtctgaagtgttaggggctgggaccgcaaca i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8158970 203 - 15139346 attactctgatccctgccttcaggtttgcatggctgtctctttgtgtggatctgtgtgtccaaatttcccctttttataaagacacccatc-gtattagactaggatgcacccaaataccctca-ttttaacttgattccctctggaaagaccctgtatttaaatatagtcacggtctgaagtgttaggggctcagactgtgaca i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6942882 203 - 7304997 actactctgatccctgccttcaggttcacatggctgtctccttgtgtggatctctgtgtccaaatttcccctttttataaagacacctatc-gtattagactaggatgcgcccaaatgccctca-ttgtaacttgattccctctgtaaagaccctgtatttaaatatagtcagagtctgaagtgttaggggctgggactgcaaca i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9360992 201 - 11631747 atcactctgatccctgccttcaggttcacatggcagtccccttgggtgaatctccatgtccaaatttcccctttttataaagacacccatc-gtattggactaggatgcacccaaatgccctca-ttttaacttgattccctctgtagagacc--gtttttaaatatagtcacgttttgaggtattgggggctgggactgcaaca i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47960863 203 + 63241923 atcatctcaacctctgcctttatgttcacatggtgttcttactgcattagtctc--tctccaaattttccctttttataaggacactagtcaatattgaattagggtccactctaataatctcatttttaacttgattgtcaccataaacaccctatatctaagtaaggccatattgtaaggtactgggggttaggacttcaatg i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e mm10.chr5 76401150 205 + 151834684 I e dasNov3.JH568349 4075164 70 - 5279953 I e otoGar3.GL873602 8595145 0 + 8790067 C a score=486924.000000 s hg38.chr4_KI270787v1_alt 39419 46 + 111943 tatgaattttggagaaacacaattcaacccgtaacaCCAAAGTTAC s panTro5.chr4 119604441 46 - 194502333 tatgaattttggagaaacacaattcaacctgtaacaCCAAAGTTAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121018018 46 - 195804263 tatgaattttggagaaacacaattcaacctgtaacaCCAAAGTTAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4449151 46 - 17550833 tatgaattttggagaaacacaattcaacccgtaacaCCAAAGTTAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69322146 37 - 118206036 tatgaat---------atgcagttcaacccgtaacaCCAAAGTTAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111526093 46 - 190429646 tatgaattttggagaaacacaatgtaacccgtaacaCCGAAGTTAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110694234 46 - 189454096 tatgaattttggagaaacacaatgtaacccgtaacaCCGAAGTTAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13262295 46 + 26754465 tatgaattttggagaaacgcaatgtaacccgtaacaCCGAAGTTAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4163539 46 - 5137665 tatgaattttggagaaacacaatgtaacctgtaacaCCGAAGTTAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122878402 46 - 135778131 tatgaattttggagaaacacaatgtaacccgtaacaCCGAAGTTAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1980225 46 + 2427316 tatgaattttggagaaacacaatgtaacccgtaacaCTGAAGTTAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1273783 46 + 1448899 tatgaattttggagaaacacaatgtaacccgtaacaCCAAAGTTAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52995359 46 - 190850796 tacgaattttggaggaacacaattcaacccgtaacaTCAGAGTTAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8159173 46 - 15139346 ttcgaattttggaggaacacaattcaacccgtaataTCAGAGTTAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6943085 46 - 7304997 tacgaattttggaggaacacaattcaacctgtaacaTCAGAGTTAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9361193 46 - 11631747 tacgaattttggaggagcacaattcaacccgtaacaCCAGAGTTAT i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76401355 43 + 151834684 TATGAATTTTGGA---AGACAGTCCAACTCATAACACCAAGATCAT i mm10.chr5 I 205 C 0 s canFam3.chr13 47961066 46 + 63241923 tataaatttgggatgaacacaattcaactaataacaCTAGGATTAT i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e dasNov3.JH568349 4075164 70 - 5279953 I e otoGar3.GL873602 8595145 0 + 8790067 C a score=654203.000000 s hg38.chr4_KI270787v1_alt 39465 59 + 111943 TGCCAC----TAGCAATGCTTTCTAGATTTCCCAGATAT-CCTTGAATTTCCTAAGTGTCTTTT s panTro5.chr4 119604487 59 - 194502333 TGCCAC----TAGCAATGCTTTCTAGATTTCCCAGATAT-CCTTGAATTTCCTAAGTGTCTTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121018064 59 - 195804263 TGCCAC----TAGCAATGCTTTCTAGATTTCCCAGATAT-CCTTGAATTTCCTAAGTGTCTTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4449197 59 - 17550833 TGCCAC----TAGCAATGCTTTCTAGATTTCCCAGATAT-CCTTGAATTTCCTAAGTGTCTTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69322183 59 - 118206036 TGCCAC----TAGCAATGCTTTCTGGATTTCCCAGATAT-CCTTGAATTTCCTAAGTGTCTTGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111526139 59 - 190429646 CGCCAC----TAGCAATGCTTTCTGGATTTCCCCAATGT-CTTTGAATTTCATAAATGTCTTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110694280 59 - 189454096 CGCCAC----TAGCAATGCTTTCTGGATTTCCCCAATGT-CTTTGAATTTCATAAATGTCTTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13262341 59 + 26754465 TGCCAC----TAGCAATGCTTTCTGGATTTCCCCAATGT-CTTTGAATTTCATAAATGTCTTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4163585 59 - 5137665 CGCCAC----TAGCAATGCTTTCTGGATTTCTCCAATGT-CTTTGAATTTCATAAATGTCTTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122878448 59 - 135778131 CGCCAC----TAGCAATGCTTTCTGGATTTCCCCGATGT-CTTTGAATTTCATAAGTGTCTTTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1980271 59 + 2427316 CGCCAC----TAGCAATGCTTTCTGGATTTCCCCAATGT-CTTTGAATTTCATAAATGTCTTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1273829 59 + 1448899 TGCCAC----TAGCAATGCTTTCTGGATTTCCCTGATGT-CTTTGAATTTCATAAGTGTCTTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52995405 59 - 190850796 TGCCAC----TAGTGATGCTTTCTAGATTTCCCAGATAT-CCTTGAATTTTATAAGTGTCTTTC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8159219 57 - 15139346 TGCCAC----TAGCGATGCTTTCTAGATTTCCCAGATAT-ACTTGAATTTTAT--GTGTCTTTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6943131 59 - 7304997 TGCCAC----TAGCAATGCTTTCTAGATTTCCCATATAT-ACTTGAATTTTATAAGTGTCTTTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9361239 58 - 11631747 TGCCAC----TAGCAATGCTTT-TAGATTTCCCAGATGT-TCTTGAATTTTATAAGTGTCTTTC i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76401398 59 + 151834684 TGCTACAGGTGAGAAGCACTTGCTGG--CTCCTTGATCTACCTTG--TTGTATAATTGTCTTT- i mm10.chr5 C 0 C 0 s canFam3.chr13 47961112 59 + 63241923 TGCCAT----TAGTAAAGCTTTCTGGATTTCCCACAGAT-CCTTGAATTTCATAAGTATCTTTT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4075234 57 - 5279953 tgccac-----agtgaCGCTCTCTGGATTTCCCAAAAAT-CTTTGTAGTTCATAAAT-TCTTTC i dasNov3.JH568349 I 70 I 565 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e otoGar3.GL873602 8595145 0 + 8790067 C a score=794508.000000 s hg38.chr4_KI270787v1_alt 39524 61 + 111943 ATACGAAGGATCT--------AAGCTTATAAAACATTTTCATTAGTAACACCTCTAATTAAAGACAAAT s panTro5.chr4 119604546 61 - 194502333 ATATGAAGGATCT--------AAGCTTATAAAACATTTTCATTAGTAACACCTCTAATTAAAGACAAAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121018123 61 - 195804263 ATATGAAGGATCT--------AAGCTTATAAAACATTTTCATTAGTAACACCTCTAATTAAAGACAAAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4449256 61 - 17550833 ATACGAAGGATCT--------AAGCTTATAAAACATTTTCATTAGTAACACCTCTAATTAAAGACAAAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69322242 61 - 118206036 ATACCAAGGATCT--------AAGCTTATAAAACATTTTCATTAGTAACACCTCTAATTAAAGACAAAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111526198 61 - 190429646 ATACCAAGGATCT--------AAGCTTATAAAACATTTTCATTAGTAACACCTCTAATTAAAGACAAAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110694339 61 - 189454096 ATACCAAGGATCT--------AAGCTTATAAAACATTTTCATTAGTAACACCTCTAATTAAAGACAAAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13262400 61 + 26754465 ATACCAAGGATCT--------AAGCTTATAAAACATTTTCATTAGTAACACCTCTAATTAAAGACAAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4163644 61 - 5137665 ATACCAAGGATCT--------AAGCTTATAAAACATTTTCATTAGTAACACCTCTAATTAAAGACAAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122878507 61 - 135778131 ATACCAAGGATCT--------AAGCTTATAAAACATTTTCATTAGTAACACCTCTAATTAAAGACAAAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1980330 61 + 2427316 ATACCAAGGATCT--------AAGCTTATAAAACATTTTCATTAGTAACACTTCTAATTAAAGACAAAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1273888 61 + 1448899 ATACCAAGGATCT--------AAGCTTTTAAAACATTTTCATTAGTAACACCTCTAATTAAAGACAAAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52995464 61 - 190850796 ATACCAAGGATCC--------AAGCTTATAAACCATTTTCATGAGTAACACCTCTAATTAAAGACAAAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8159276 61 - 15139346 ATACCAAGGATCC--------AAGGTTATAAACCATTTTCATGAATAACACCTCTAATTAAAGACAAAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6943190 61 - 7304997 ATACCAAGGATCC--------AAGCTTATAAACCGTTTTCATGAGTAACACCTCTAATTAAAGACAAAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9361297 61 - 11631747 ATACCAAGGATCC--------AAGCTTATAAACCATTTTCATGAGTAACATCTCTAATTAAAGACAAAT i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76401457 60 + 151834684 ATACCAAGGAACC--------CAGTATATAAA-CATTTTCATTAGTGATACCTCTAGTTAGAGGCAAAT i mm10.chr5 C 0 C 0 s canFam3.chr13 47961171 69 + 63241923 ATACCAAGTATCTTTCATGCCAAGTCTATAAAATATTTTTATTAGTAATACACCTAATTAAAGACAAAT i canFam3.chr13 C 0 I 7085 s dasNov3.JH568349 4075856 53 - 5279953 ACACCAAAGAGTC--------ACATTTATAAAACATTTTCATTAGTAACACTTCTAATTAA-------- i dasNov3.JH568349 I 565 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e otoGar3.GL873602 8595145 0 + 8790067 C a score=1182814.000000 s hg38.chr4_KI270787v1_alt 39585 112 + 111943 CCCTTAATTCCACAAG----AAAACAACTGAGATTTGATGTCAATTCAAAAAGCTAGTTATTAATCCATCATAACCCATTTTGTGGGCATTAATGGAGGATAACTTTTCATGCACA s panTro5.chr4 119604607 112 - 194502333 CCCTTAATTCCACAAG----AAAACAACTGAGATTTGATGTCAATTCGAAAAGCTAGTTATTAATCGATCATAACCCATTTTGTGGGCATTAATGGAGGATAACTCTTCATGCTCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121018184 112 - 195804263 CCCTTAATTCCACAAG----AAAACAACTGAGATTTGATGTCAATTCAAAAAGCTAGTTATTAATCGATCATAACCCATTTTGTGGGCATTAATGGAGGATAACTCTTCATGCTCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4449317 112 - 17550833 CCCTTAATTCCACAAG----AAAACAACTGAGATTTGATGTCAATTCGAAAAGCTAGTTATTAATCGATCATAACCCATTTTGTGGGCATTAATGGAGGATAACTCTTCATGCACA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69322303 112 - 118206036 CCCTTAATTCCACAAG----AAAACAACTGAGATTTGATGTCAGTTCAAAAAGCTAGTTATTAATCGATCGTAACCCATTTTGTGGGCATTAATGGAGGATAACTCTTCATGCACA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111526259 112 - 190429646 CCCTTAATTCAACAAG----AAAACAACTGAGATTTGATGTCAATTCAAAAAGTTAGTTATCAAGCGATCGCAACCCATTTTGTGGGCATTAATGGAGGATAACTCTTCATGCACA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110694400 112 - 189454096 CCCTTAATTCAACAAG----AAAACAACTGAGATTTGATGTCAATTCAAAAAGTTAGTTATCAATCGATCGCAACCCATTTTGTGGGCATTAATGGAGGATAACTCTTCATGCACA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13262461 112 + 26754465 CCCTTAATTCAACAAG----AAAACAACTGAGATTTTATGTCAATTCAAAAAGTTAGTTATCAATCGATCGTAACCCATTTTGTGGGCATTAATGGAGGATAACTCTTCATGCACA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4163705 112 - 5137665 CCCTTAATTCAACAAG----AAAACAACTGAGATTTGATGTCAATTCAAAAAGTTAGTTATCAATCGATCGCAACCCATTTTGTGGGCATTAATGGAGGATAACTCTTCATGCACA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122878568 111 - 135778131 CCCTTAATTCAACAAG----AAAACAACTGAGATTTGATGTCAATTC-AAAAGCTAGTTATCAATCGATCGTAACCCATTTTGTGGGCATTAATGGAGGATAACTCTTCATGCACA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1980391 112 + 2427316 CCCTTAATTCAACAAG----AAAACAACTGAGATTTTATGTCAATTCAAAAAGTTAGTTATCAATCGATCGCAACCCATTTTGTGGGCATTAATGGAGGATAACTCTTCATGCACA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1273949 112 + 1448899 CCCTTAATTCAACAAG----AAAACAACTGAGATTTGATGTCAATTCAAAAAGCTAGTTATCAATCGATCGCAACCCATTTTGTGGGCATTAATGGAGGATAACTCTTCATGCACA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52995525 112 - 190850796 CCTTTAATTCAACAAG----AAAACAACTGAGATTTGATGTCAATTCAAAAAGCTAGTCATTAATCTATTGTAACCCAATTTGTGGGTATTAGTGCAAGATAAATCTTCATGCACA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8159337 112 - 15139346 CCTTTAATTCAACAAG----AAAACAACTGAGATTTGATGTCAATTCAAAAAGCTAGTCATTAATCTACTGTAACCAATTTTGTGGGTATTAGTGCAAGATAAATATTCATGCACA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6943251 112 - 7304997 CCTTTAATTCAACAAG----AAAACAACTGAGATTTGATGTCAATTCAAAAAGCGAGTCATTAATCTATTATAACCCATTTTGTGGATATTAGTGCAAGATAAATCTTCATGCACA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9361358 112 - 11631747 CCTTTAATTCAACAAG----AAAACAATGAAGATTTGATGTCAATTCAAAAAGCTAGTCATTAATCTATTGTAACCCATTTTGTGGGTATTATTGCAGGATAAATCTTCATGCACA i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76401517 110 + 151834684 CTCTCCATTTGCTAAG----ACAATAATTGATATTTGGCAGCACTTCAAAATA-GAATCATTAATCTACTATAACCCAG-GTGTGGGCATTAGTGAAGGATAACTCTCCACGGACA i mm10.chr5 C 0 I 20 s dasNov3.JH568349 4075909 83 - 5279953 ---TTAAATACACAAATCTCAGTTCAACTGAGATGTGAAGTCAATCCACAAGG---------AAACTATCATTACC-ACTTTGCAGACATTAGTgg-------------------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e micMur3.chrUn_NW_017968520v1 1761821 1417 + 3286835 I e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47961240 7085 + 63241923 I a score=626957.000000 s hg38.chr4_KI270787v1_alt 39697 58 + 111943 CTGtgagctgagggtcaggaaatatggggccaagccctgactctgccatt---cattcact s panTro5.chr4 119604719 58 - 194502333 CTGtgagctgagggtcaggaaatatggtgccaagccctgactctgccatt---cattcact i panTro5.chr4 C 0 C 0 s panPan2.chr4 121018296 58 - 195804263 CTGtgagctgagggtcaggaaatatggcgccaagccctgactctgccatt---cattcact i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4449429 58 - 17550833 TTGtgagctgagggtcaggaaatatggggccaagccctgactctgccatt---cattcact i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69322415 58 - 118206036 CTGtgggctgagggtcaggaaatacggggccgagccctgactctgccatt---cattcact i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111526371 58 - 190429646 CTGtgggctgagggtcaggaaattcagggccgagccctgactctgccatt---cattcact i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110694512 58 - 189454096 CTGtgggctgagggtcaggaaattcggggtcgagccctgactctgccatt---cattcact i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13262573 58 + 26754465 CTGTgggctgagggtcaggaaattcggggtcgagccctgactctgccatt---cattcact i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4163817 58 - 5137665 CTGTgggctgagggtcaggaaattcggggtcgagccctgactctgccatt---cattcact i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122878679 58 - 135778131 CTGtgggctgagggtcaggaaattcggggtcgagccctgactctgccatt---cattcact i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1980503 58 + 2427316 CTGTgggctgagggtcaggaaattcggggtcgagccctgactctgccatt---cattcact i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1274061 58 + 1448899 CTGtgggctgagggtcaggaaatttggggtcgagccctgactctgccatt---cattcact i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52995637 56 - 190850796 CTGTGGGTGGAGGGTCAGGAAATAC-GGGCCGAGCCTTGACTAAA-CACT---CATTTGCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8159449 57 - 15139346 CTGTGGGCGGAGGGTCAGGAAATACAGGGCTGAGCCTTGACTAAG-CACT---CATTTGCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6943363 57 - 7304997 CTGTGGGCGGAGGGTCAGGAAATACGGGGCTGAGCCTTGACTAAA-CACT---CATTTGCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9361470 57 - 11631747 CTGTGGGCAGAGGGTCAGGAAATATGAGGCCGAGCCTTGACTAAA-CACT---CATTTGTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1763238 58 + 3286835 ctgtgggctgggggtcaggaaatatggagctgagtcctaactctgacact---cactaact i micMur3.chrUn_NW_017968520v1 I 1417 C 0 s mm10.chr5 76401647 61 + 151834684 TTGTGGACAGGAGGTTAAGAGACGCTGAACTAAACCCCGACCTTCACAGTCACCATGTACT i mm10.chr5 I 20 I 2 s dasNov3.JH568349 4075992 52 - 5279953 ------gctgcaggtcaggaaatacatagccaagtcttagctctgacact---aactcacc i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1840390 16566 + 4188776 I e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47961240 7085 + 63241923 I a score=480230.000000 s hg38.chr4_KI270787v1_alt 39755 38 + 111943 gt-gggatcA-TTTACCTTCTGGATTGCCACTGCCTCTTA s panTro5.chr4 119604777 38 - 194502333 gt-gggatcA-TTTACCTTCTGGATTGCCACTGCCTCTTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121018354 38 - 195804263 at-gggatcA-TTTACCTTCTGGATTGCCACTGCCTCTTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4449487 38 - 17550833 gt-gggatcA-TTTACCTTCTGGATTGCCACTGCCTCTTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69322473 38 - 118206036 gt-gggatcA-TTTACCATCTGCATTGCCACTGCCTCTTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111526429 38 - 190429646 gt-gggatcA-TTTACCATCTGCATTGCCACTGCCTCTTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110694570 38 - 189454096 gt-gggatcA-TTTACCATCTGGATTGCCACTGCCTCTTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13262631 38 + 26754465 gt-gggatca-tttaccatctggattgccactgcctcttc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4163875 38 - 5137665 gt-gggatca-tttaccatctggattgccactgcctcttc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122878737 33 - 135778131 gt-gggatca-cttaccatctggatttc-----cctcttc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1980561 38 + 2427316 gt-gggatca-tttaccatctggattgccactgcctcttc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1274119 38 + 1448899 gt-gggatca-tttaccatctggattgccagtgcctcttc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52995693 37 - 190850796 GTGGGGATCA-TTTACCTTCTGGATTGCCACTGCCTCT-- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8159506 36 - 15139346 GT-GGGATCA-TTTACCTTCTGAATTGTCACTGCCTCT-- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6943420 36 - 7304997 GT-GGGGTCA-TTTACCTTCTGGATTGCCACTACCTCT-- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9361527 36 - 11631747 GT-GGGGTCA-TTTACCTTCTGGATTGCCACTGCCTCT-- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1763296 38 + 3286835 gt-gggaccA-TTTACCATCTGGACTGCCACTGACTCTTC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1856956 38 + 4188776 GT-GGGACCA-TTTACCATTGGGATTGCCACTGCCTCTTC i proCoq1.NW_012140747v1 I 16566 C 0 s mm10.chr5 76401710 39 + 151834684 CT-GGGACCATTTTGTCACCTAGATTGCCACATTCCTTTC i mm10.chr5 I 2 C 0 s dasNov3.JH568349 4076044 38 - 5279953 gg-gggaaca-cttgccatctggacctccactgcctcttc i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8595145 0 + 8790067 C e canFam3.chr13 47961240 7085 + 63241923 I a score=164447.000000 s hg38.chr4_KI270787v1_alt 39793 13 + 111943 TTGTAGAGGAGTT s panTro5.chr4 119604815 13 - 194502333 TTGTAGAGGAGTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121018392 13 - 195804263 TTGTAGAGGAGTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4449525 13 - 17550833 TTGTAGAGGAGTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69322511 13 - 118206036 TTGTGGAGGACTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111526467 13 - 190429646 TTGTGGAGGAGTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110694608 13 - 189454096 TTGTGGAGGAGTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13262669 13 + 26754465 ttgtggaggagtt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4163913 13 - 5137665 ttgtggaggagtt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122878770 13 - 135778131 gtgtggaggagtt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1980599 13 + 2427316 ttgtggaggagtt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1274157 13 + 1448899 ttgtggaggagtt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52995730 12 - 190850796 -TGTGGAAGAATC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8159542 12 - 15139346 -CGTGGAAGAATT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6943456 12 - 7304997 -TGTGGAAGAATT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9361563 12 - 11631747 -TGTGGAAGAATT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1763334 13 + 3286835 CCATGGAGAAGTG i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1856994 13 + 4188776 TCATGGAGGAGTT i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76401749 13 + 151834684 TTATTAAGACGCT i mm10.chr5 C 0 C 0 s canFam3.chr13 47968325 13 + 63241923 tcATGGAGGAGTT i canFam3.chr13 I 7085 C 0 s dasNov3.JH568349 4076082 13 - 5279953 tcacagaggagtc i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8595145 0 + 8790067 C a score=4467463.000000 s hg38.chr4_KI270787v1_alt 39806 301 + 111943 GATACGATTTTGAAATTCCAGA-TGA-TCCTCTGATTCCTATTCTATTTGGTGATGCTCTGTTTTGTGCTA-GTCTCTTCTATGCC-----------CCCACACAAATATAGGCAACAGAGAGA--CAGATGATATGTACAAGCAAGCATACTTATAACACTTATTCACAGCCCCCTAGATTCTTAGAAATAGAAGGCTTTCACTGactgtcctcatttaacaaa----gaaatggaagcctagggggcttaagtgactagtcctaag--acacacaCATCATTCCTTGCTTGAACAACTTCAAATAGG--------------------------------------------------------------------------GCAGTGGTCCTTAA- s panTro5.chr4 119604828 301 - 194502333 GATACGATTTTGAAATTCCGGA-TGA-TCCTCTGATTCCTATTCTATTTGGTGATGCTCTGTTTTGTGCTA-GTCTCTTCTATGCC-----------CCCACACAAATATAGGCAACAGAGAGA--CAGATGATATGTACAAGCAAGCATACTTATAACACTTATTCACAGCCCCCTAGATTCTTAGAAATAGAAGGCTTTCACTGactgtcctcatttaacaaa----gaaatggaagcctagggggcttaagtgactagtcctaag--acacacaCATCATTCCTTGCTTGAACAACTTCAAATAGG--------------------------------------------------------------------------GCAGTGGTCCTTAA- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121018405 301 - 195804263 GATACGATTTTGAAATTCCGGA-TGA-TCCTCTGATTCCTATTCTATTTGGTGATGCTCTGTTTTGTGCTA-GTCTCTTCTATGCC-----------CCCACACAAATATAGGCAACAGAGAGA--CAGATGATATGTACAAGCAAGCATACTTATAACACTTATTCACAGCCCCCTAGATTCTTAGAAATAGAAGGCTTTCACTGactgtcctcatttaacaaa----gaaatggaagcctagggggcttaagtgactagtcctaag--acacacaCATCATTCCTTGCTTGAACAACTTCAAATAGG--------------------------------------------------------------------------GCAGTGGTCCTTAA- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4449538 301 - 17550833 GATACGATTTTGAAATTCCGGA-TGA-TCCTCTGATTCCTATTCTATTTGGTGATGCTCTGTTTTGTGCTA-GTCTCTTCTATGCC-----------CCCACACAAATATAGGCAACAGAGAGA--CAGATGATATGTACAAGGAAGCATACTTATAACACTTATTCACAGCCCCCTAGATTCTTAGAAATAGAAGGCTTTCACTGactgtcctcatttaacaaa----gaaatggaagcctaggggtcttaagtgactagtcctaag--acacacaCATCATTCCTTGCTTGAACAACTTCAAATAGG--------------------------------------------------------------------------GCAGTGGTCCTTAA- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69322524 301 - 118206036 GATAAGATTTCGAAATTCCAGA-TGA-TCCTCTGATTCCTATTCTATTTGGTGATGCTCTGTTTTGTGCTA-TTCTCTTCTATGCC-----------CACACACAAATATAGGCAACAGGGAGA--CAGATGATATATACAAGCAAGCATACTTATAACACTTATtcacagcctcctagattcttagaaatagaagcctttcactgactgtcctcatttaacaaa----gaaatggaagcctagggggcttaagtgactagtcctaag--acacacaCATCATTCCTTGCTTGAACAACTTCAAATAGG--------------------------------------------------------------------------GCAGTGGTCCTTAA- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111526480 299 - 190429646 GATAAGATTTCTAAATTCCAGA-TGA-TCCTCTGATCCCTATTCTATTTGGTGATGCTCTGTTTTGTGCTA-TTCTCTTCTATGCC-----------CACACACAAATATGGGCAACAGAGAGA--CAGATGATATATACAAGCAAGCATACTTATAACACTTATTCACAGCCTCCCAGATTCTTAGCAATAGAAGGCTTTCACTGactgtcctcatttgacaaa----gaaatggaagcctagggggcttaagtgattagtcctaag----acacacGTCATTCCTTGCTTGAATACCTTCAAATACA--------------------------------------------------------------------------GCAGTGGTCCTTAA- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110694621 299 - 189454096 GATAAGATTTCTAAATTCCAGA-TGA-TCCTCTGATCCCTATTCTATTTGGTGATGCTCTGTTTTGTGCTA-TTCTCTTCTATGCC-----------CACACACAAATATGGGCAACAGAGAGA--CAGATGATATATACAAGCAAGCATACTTATAACACTTATTCACAGCCTCCCAGATTCTTAGCAATAGAAGGCTTTCACTGactgtcctcatttgacaaa----gaaatggaagcctagggggcttaagtgattagtcctaag----acacacGTAATTCCTTGCTTGAATACCTTCAAATACA--------------------------------------------------------------------------GCAGTGGTCCTTAA- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13262682 299 + 26754465 gataagatttctaaattccAGA-TGA-TCCTCTGATCCctattctatttggtgatgctctgttttgtgcta-ttctcttctgtGCC-----------CACACACAAATATGGGCAACAGAGAGA--CAGATGATATATACAAGCAAGCATACTTATAACACTTATTCACAGCCTCCCAGATTCTTAGCAATAGAAGGCTTTCACTGactgtcctcatttgacaaa----gaaatggaagcctagggggcttaagtgattagtcctaag----acacacGTCATTCCTTGCTTGAATACCTTCAAATACA--------------------------------------------------------------------------GCAGTGGTCCTTAA- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4163926 299 - 5137665 gataagatttctaaattccAGA-TGA-TCCTCTGATCCTTATTCTATTTGGTGATGCTCTGTTTTGTGCTA-TTCTCTTCTATGCC-----------CACACACAAATATGGGCAACAGAGAGA--CAGATGATATATACAAGCAAGCATACTtataacacttattcacagcctcccagattcttagcaatagaaggctttcactgactgtcctcatttgacaaa----gaaatggaagcctagggggcttaagtgattagtcctaag----acacacatcaTTCCTTGCTTGAATACCTTCAAATACA--------------------------------------------------------------------------GCAGTGGTCCTTAA- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122878783 299 - 135778131 gataagatttctaaattccAGA-TGA-TCCTCTGATTCCTATTCTATTTGGTGATGCTCTGTTTTGTGCTA-TTCTCTTCTATGCC-----------CACACACAAATATTGGCAACAGAGAGA--CAGATGATATATACAAGCAAGCATACTTATAACACTTATTCACAGCCTCCCAGATTCTTAGCAATAGAAGGCTTTCACTGACTGTCCTCATTTAACAAA----GAAGTGGAAGCCTAGGGGGCTTAAGTGATTAGTCCTATG----ACACCTGTCATTCCTTGCTTGAATACCTTCAAGTACA--------------------------------------------------------------------------GCAGTGGTCCTTAA- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1980612 299 + 2427316 gataagatttctaaattccaga-tga-tcctctgattcCTATTCTATTTGGTGATGCTCTGTTTTGTGCTA-TTCTCTTCTATGCC-----------CACACACAAATATGGGCAACAGAGAGA--CAGATGATATATACAAGCAAGCATACTTATAACACTTATTCACAGCCTCCCAGATTCTTAGCAATACAAGGCTTTCACTGactgtcctcatttgacaaa----gaaatggaagcctagggggcttaagtgattagtcctaag----acacacaTCATTCCTTGCTTGAATACCTTCAAATACA--------------------------------------------------------------------------GCAGTGGTCCTTAA- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1274170 299 + 1448899 gataagatttctaaattccaga-tga-tcctctgattcCTATTCTATTTGGTGATGCTCTGTTTTGTGCTA-TTCTCTTCTACACC-----------CACACACAAATATAGGCAACAGAGAGA--CAGATGATATATACAAGCAAGCATACTTATAACACTTATTCACAGCCTCCTGGATTCTTAGCAATAGAAGGCTTTCACTGactgtcctcatttgacaaa----gaaatggaagcctagggggcttaagtgattagtcctaag----acactcaTCATTCCTTGCTTGAATACCTTCAAATACG--------------------------------------------------------------------------GCAGTGGTCCTTAA- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52995742 296 - 190850796 AATAAGATTTCTAAATTCCAGA-TGA-TCCTCTGATTCCTATTCTATCTGGTGATGCTCTGTTTTGTGCTA-TTTTCTTCTATCTC-----------CACATACAAATATGGGCAACAGAGAGA--TAGATGACATATACAAGCAAGCATACATACAACACTTATTCACAGCCTTCTAGATTCTTAGAAATAGAAGGCTTTCACTGACTG----TACTTAAAACA----GAAATGGAAGAAGAGGTGG-TTAAGTGACTAGTCCTAAG--ACAAACACATCATTCCTTGCTTGAATAACTTCAAATAGA--------------------------------------------------------------------------GCCATGATCCTGAA- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8159554 300 - 15139346 GATAAGATTTCTAAATTCCAGA-TGA-TCCTCTGATTCCTATTCTATCTGGTGATGCTCTGTTTTGTGCTA-TTTTCTTCTATCTC-----------CACACTCAAATATGGGCAACAGAGAGA--TAGATGACATATACAAGCAAGCATACATATAACACTTATTCACAGCCTTCTAGAGTCTTAGAAATAGAAGGCTTTCACTGactgtccttatttaaaaca----gaaatggaagcataggtgg-ttaagtgactagtcctaag--acacacacatcattccttgcttgaataactttcagtaga--------------------------------------------------------------------------gtcaggattcTTAA- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6943468 301 - 7304997 GGTAAGATTTCTAAATTCCAGA-TGA-TCCTCTGATTCTTATTCTGTCTGGTGATGCTCTGTTTTGTACTATTTTTCTTCTATCTC-----------CACACACAAATATAGGCAACAGAGAGA--TAGATGACATATACAAGCAAGCATACATATAACACTTATTCACAGCCTTCTAGATTCTTAGAAATAGAAGGCTTTCACTGactgtccttatttaaaaca----gaaatggaagcataggcgg-ttaagtgactagtcctaag--acacacaCATCATTCCTTGCTTAAATAACTTCAAATAGA--------------------------------------------------------------------------GCCATGATCCTTAA- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9361575 300 - 11631747 GATAAGATTTCTAAATTCCAGA-TGA-TCCTCTGATTCCTATTCTATCTGGTGATGCTCTGTTTTGTGCTA-TTTTCTTCTATATC-----------CACACACAAATATGGGCAACAGAGAGA--TAGATGACACATACAAGCAAGCATACATATAACACTTATTCACAGCCTTCTAGATTCTTAGAAATAGAAGGCTTTCACTGactgtccttatttaacaca----gaaatggaagcctagggag-ttaagtgactagtcataag--acacacaCATCATTCCTTACTTGAATAACTTCAAATAGA--------------------------------------------------------------------------GCCATGATCCTTAA- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1763347 301 + 3286835 GATATGACCTCCAGATTCCAGAGTGA-GTCTCTGATTCCTATTCTATGTGATGATGCTCTGTTTTGTGCTA-TTCTTTTCTATGCC-----------CACATGCAAATATGGGCAACAGAGAGA--CA-ATGACATAAATAGACAAGTGTATTTATAACACCTATtcacagactcatagattcttagaaatagaaggctttcatctactgccctcatttaacaaa----gaaatgaaagcctagggggcttaggcaactagtcctaag--acacataCATCATTCCTTGATGGAATAACTTCAAATAGG--------------------------------------------------------------------------CAAGGGGTCTTTAA- i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1857007 300 + 4188776 GATATGATCTCTAGATTCCAGAGTGA-GTCTCTGATTCCCATTCTATGTAGTGATGTTCTCTTTTGTGCTA-TTCTTTTCTATGCC-----------CACAAGCAAATATGGGCAACAGAGAGA--CA-ATGACATAAATAGACAAGTGTATTTATAACACCTATtcacagactcatagattcttagaaatagaaggctttcatctactgccctcatttaacaaa----gaaatgaaagcctagggggcttaggcgactagtcctaag--acacacaCATCATTCCTTGGTTGAATAACTTCAAACAGG--------------------------------------------------------------------------GAA-GGGTCTTTAA- i proCoq1.NW_012140747v1 C 0 I 10 s otoGar3.GL873602 8595145 301 + 8790067 GACATGATCTCTAAATTCCAGACTGA-TTCTCGGATTCCTGTTCTATTTGGTGATGCTCTGTTTTGTGCCA-TTCTTTTCTATCTC-----------TTCATACAAATATGGGCAACAGAGAGAGGCA-ATGACATAAATAGATAAGCATATGTATAACACCTATTCACAGGCTCATAGAGTCTTAGAAACCCAAGGCTTTCCTTTACTGTCCTTGTTTAACAAA----GAAAGGGAGGCCTAGGGGA-TTAAGTGATTA-TCCTAAA--ACATATATATCATCTCTTGATTAAATAACTTCAAATAGG--------------------------------------------------------------------------GAAGGGGGCTTTAA- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76401762 270 + 151834684 GGTGTAATTTCTACATTCTAGA-TAATTCCTCTAA------------------------TATTTCGTGCCA-GTATTTCTTACTCCTGGCACCACCACCTGAACAAATGTAGGTGACAGAAAGA----GATTATACAAGCAGACAGGATCATCTGTAGCCATCCATCACAGACTGGCACACTTACAGAAATAGAAGGCTTTCATCTA-TACTCTCCTTCAACAAA----GGCATGGA--CCCAGAGAGGTCAGATGACAAGCCCAAGG--------ACAGTCTTCCTAGCTTGAATGGCTTC-AGTAGA--------------------------------------------------------------------------GTACGGG-------- i mm10.chr5 C 0 C 0 s canFam3.chr13 47968338 303 + 63241923 TATATGGTCTCTAAACTCCAGG-AGA-TTCTTTGATtcctattctattttgttatgctctgttttatacta-ttctttcctatccC-----------CACACCCTAATATGAGCAAGAGAGAGG--TAAATGACATAAATAGACAAGCATATTTGTAGTATCCATTCACAGAC----AGATTTTTAGAAAAGGAAAACTTTCATCTACTGctctcatttaacagacaagaaaatggaagccttgggaggttaagtgactagtccaaaggcacataTATATCATTCCTAGGTTGAATAACTTCAAATAGG--------------------------------------------------------------------------GCAGTGGTCCTTAA- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4076095 372 - 5279953 aacatgctctttaaattctcta-tga-ctatctgattcccattctatTTTGTTGTGCTCTGTCTTATGTTC-TTCTTTTCTTTTTC-----------CATACCCACATATGGACAATAGAGAGG--TAGATGACCTAACTTGACAAGTATATTTATAGCACCTCTTTGCAGATTCATAGATTTTTATAAATGGAGGGCTTTTATATAGAGCC----TTCAGCAAA----GAAATCAAAGCATAGGATAGTTAAGTGACTAGTCCTAAG--ACACATACATCAGTTCTTGCTTGAATAACTTCATGTAAGAAGTGGGGCCATATCTTGGAAGCTTGTTGGGAAATTCCCATGCTTTGGCTCTGGGAGTTCAGGTGGGCAGGTGTGCAGAGGGCTCTGAA i dasNov3.JH568349 C 0 C 0 a score=662827.000000 s hg38.chr4_KI270787v1_alt 40107 57 + 111943 ATTAGATCCACAGACccaggggtcttcatggatgaattttagg------ggtctatatatc-cc s panTro5.chr4 119605129 58 - 194502333 ATTAGATCCACAGACccaggggtcttcatggatgaattttagg------ggtctatatatctcc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121018706 58 - 195804263 ATTAGATCCACAGACccaggggtcttcatggatgaattttagg------ggtctatatatctcc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4449839 58 - 17550833 ATTAGATCCACAGACccaggggtcttcatggatgaattttagg------ggtctatatatctcc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69322825 58 - 118206036 ATTAGATCCGCAGACccaggggtcttcatggatgaattttagg------ggtctatatatctcc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111526779 57 - 190429646 ATTAGATCCACAGaccca-gggtcttcatggatgaattttagg------ggtctatatacctcc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110694920 57 - 189454096 ATTAGATCCACAGaccca-gggtcttcatggatgaattttagg------ggtctatatacctcc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13262981 57 + 26754465 ATTAGATCCACAGaccca-gggtcttcatggatgaattttagg------ggtctatatacctcc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4164225 57 - 5137665 ATTAGATCCACAGaccca-gggtcttcatggatgaattttagg------ggtctatatacctcc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122879082 57 - 135778131 ATTAGATCCACAGaccca-gggtcttcatggatgaattttagg------ggtctatatacctcc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1980911 57 + 2427316 ATTAGATCCACAGaccca-gggtcttcatggatgaattttagg------ggtctatatacctcc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1274469 58 + 1448899 ATTAGATTCACAGACccaggggtcttcatggatgaattttagg------ggtctatatacctcc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52996038 58 - 190850796 ATTAGGTCCACGGACccagaggtcttcatggatgaattttagg------ggtctatatacctcc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8159854 58 - 15139346 ATTAGATCCACAGACccaggggtcttcatggatgaattttagg------ggtctatatacctcc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6943769 58 - 7304997 ATTAGATCCACAGACccaggggtcttcatggatgaattttagg------ggtctttatacctcc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9361875 58 - 11631747 ATCAGGTCCACAGacccggggatcttcatggatgaattttagg------ggtctatatacctcc i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1763648 10 + 3286835 -TTATACCCAC----------------------------------------------------- i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8595446 10 + 8790067 -TTATACCCTC----------------------------------------------------- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76402032 59 + 151834684 -----GTCCACAAAACAAAGGGCCTTAATGGGTGGAGCTCAGGGAGAGAGGTCTACATGATTTC i mm10.chr5 C 0 C 0 s canFam3.chr13 47968641 57 + 63241923 ATTAAATCCACAGACCCATGGGTCtccatggatgaatctcaaa------agtctatatacctc- i canFam3.chr13 C 0 I 1 s dasNov3.JH568349 4076467 58 - 5279953 ATAAGGTCCACAGACCTGGGGGCCTCGCTGGATGAACTTTAGG------GGTCTGGATACCTCC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1857307 10 + 4188776 I a score=9925950.000000 s hg38.chr4_KI270787v1_alt 40164 596 + 111943 tgagagttagtacacagaaat-ggaaatgaatgtacatgtgta--cattttaa------ttttt---tctgttggaatgagtccctagctttcatcaaactctca---------------------------------GCTCTCAG---CACAA-----TGCCTGGTATATAAGGCATACCTAGGAAACATCAGTTGACTTATGTGTGTCAAGTTCTCAACCACA-----GA-AAAGTTAATAACTACTGAAATAGGGTAAAATAGAATA---CAGTCATTCTCTGGAAAATAATCCTCACTAGTTCCCATCACCCAAATGCCCTATGTA---TACAGAGTCTTTCATCATCCTGCTGTTCTGAGTCCTGGATGAATTACACCATGCTGTGCTTGTCTATTAAACC-AATAGAGAAAGATTTTTTAAATCACTATTTCATCTCCTTCAGGAAATCATCCATTTTTTAAATTTCACTTTACTATCCTATTTAATTAATAAGGGTTTAAAGGTAGTTAATAAATTATA-----ATTAATTTAGGAAATGACCGTTTTGT-CCTTATTAAAGTAATTCAAATT-TTAAATGCTTGTAATTTTCATTAGTTCAATCAAGT-AAGACAGCCCCATTCCAATTAAACCTAAGCTAAC-----TTACTTTACTGTTAGTCCA s panTro5.chr4 119605187 615 - 194502333 tgagagttagtacacagaaat-ggaaatgaatgtacatgtgta--cattttaa------ttttt---tctgttggaatgagtccctagctttcatcaaactctcaaa--------------gTTctgataaatcctcagctctcag---cacaa-----tgcctggtatataaggcatacctaggaaacatcagttgaCTTATGTGTGTCAAGTTCTCAACCACA-----GA-AAAGTTAATAACTACTGAAATAGGGTAAAATAGAATA---CAGTCATTCTCTGGAAAATAATCCTCACTAGTTCCCATCACCCGAATGCCCTATCTA---TACAGAGTCTTTCATCATCCTGCTGTTCGGAGTCCTGGATGAATTACACCATGCTCTGCTTGTCTATTAAACC-AATAGAGAAAGATTTTTTCAATCACTATTTCATCTCCTTCAGGAAATCATCCATCTTTTAAATTTCACTTTACTATCCTATTTAATTAATAAGGGTTTAAAGGTAGTTAATAAATTATA-----ATTAATTTAGGAAATGACTGTTTTGT-CCTTATTAAAGTAATTCAAATT-TTAAATGCTTGTAATTTTCATTAGTTCAATCAAGT-AAGACATCCCCATTCCAATTAAACCTAAGCTAAC-----TTACTTTACTGTTAGTCCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121018764 615 - 195804263 tgagagttagtacacagaaat-ggaaatgaatgtacatgtgta--cattttaa------ttttt---tctgttggaatgagtccctagctttcatcaaactctcaaa--------------gTTctgataaatcctcagctctcag---cacaa-----tgcctggtatataaggcatacctaggaaacatcagttgaCTTATGTGTGTCAAGTTCTCAACCACA-----GA-AAAGTTAATAACTACTGAAATAGGGTAAAATAGAATA---CAGTCATTCTCTGGAAAATAATCCTCACTAGTTCCCATCACCCGAATGCCCTATCTA---TACAGAGTCTTTCATCATCCTGCTGTTCCGAGTCCTGGATGAATTACACCATGCTCTGCTTGTCTATTAAACC-AATAGAGAAAGATTTTTTCAATCACTATTTCATCTCCTTCAGGAAATCATCCATCTTTTAAATTTCACTTTACTATCCTATTTAATTAATAAGGGTTTAAAGGTAGTTAATAAATTATA-----ATTAATTTAGGAAATGACTGTTTTGT-CCTTATTAAAGTAATTCAAATT-TTAAATGCTTGTAATTTTCATTAGTTCAATCAAGT-AAGACATCCCCATTCCAATTAAACCTAAGCTAAC-----TTACTTTACTGTTAGTCCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4449897 620 - 17550833 tgagagttagtacacagaaat-ggaaatgaatgtacatgtgta--cattttaa------ttttt---tctgttggaatgagtccctagctttcatcaaactctcaaa--------------gTTctgataaatcctcagctctcag---cacaa-----tgcctggtatataaggcatacctaggaaacatcagttgaCTTATGTGTGTCAAGTTATCAACCACA-----GA-AAAGTTAATAACTACTGAAATAGGGTAAAATAGAATA---CAGTCATTCTCTGGAAAATAATCCTCACTAGTTCCCATCACCCGAATGCCCTATCTA---TACAGAGTCTTTCATCATCCTGCTGTTCCGAGTCCTGGATGAATTACACCATGCTGTGCTTGTCTATTAAACC-AATAGAGAAAGATTTTTTCAGTCACTGTTTCATCTCCTTCAGGAAATCATCCATCTTTTAAATTTCACTTTACTATCCTATTTAATTAATAAGGGTTTAAAGGTAGTTAATAAATTATA-----ATTAATTTAGGAAATGACTGTTTTGT-CCTTATTAAAGTAATTGAAATT-TTAAATGCTTGTAATTTTCATTAGTTCAATCAAGT-AAGACATCCCCACTCCAATTAAACCTAAGCTAACTTACTTTACTTTACTGTTAGTCCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69322883 615 - 118206036 tgagagttagtacacagaaat-ggaaatgaatgtacatgtgta--cattttaa------ttttt---tctgttggaatgagtccctagctttcatcaaactctcaaa--------------gTTCTGATAAATCCTCAGCTCTCAG---CACAA-----TGCCTGGTATATGAGGCATACCTAGGAAACATCAGCTGACTTACATGTGTCAAGTTCTCAACCACA-----GA-AAAGTTAATAACTACTGAAATAGGGTAAAATAGAACA---CAGTCATTCTCTGGAAAATAATCCTCACTAGTTCCCATCACCCGAATGCCCTATCTA---TACAGAGTCTTTCATCATTCTGCTGTTCCGAGTCCTGGATGAATTACACCATGCTGTGCTTGTCTATTAAACC-AATAGAGAAAGATTTTTAAAATCACTATTTCATCTCCTTCAGGAAATCATCCATCTTTTAAATTTCACTTTACTATCCTATTTAATTAATAAGGGTTTAAAGGTAGTTAATAAATTATA-----ATTAATTTAGGAAATGACTCTTTTGT-CCTTATTAAAGTAATTCAAATT-TTAAATGCTTGTAATTTTCATTAGTTCAATCAAGT-AAGACATCCCCATTCCAATTAAACCTAAGCTAAC-----TTACTTTACTGTTAGTCCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111526836 625 - 190429646 tgagagttagtacacagaaat-cggtatgaaggtacatgaata--cattttaa-----tttttt---tctgttggaatgagtccctagctttcatcaaactctcgaa-gggatcTATttttgttctgataaatcctcagctctcaa---cacaa-----tgcctggtatataaggcatacctaagaaacatcagttgaCTTATGTGTGTCAAGTTCTCAACCACA-----GA-AAAGTTAATAACTACTGAAACAGAGTAAAATAGAATA---CAGTCATTCTCTGGAAAATAATCCTCACTAGTTCCCATCACCAGAATGCTCTCCCTA---TACAGAGTCTTTCATCATCCTGCTGTTCCAAGTCCTGG----ATTACACCATGCTGTGCTTGTCTATTAAACC-AATAGAGAAAGATGTTTAAAATTACTATTTCATCTCCTTCAGGAAATCATCCATCTTTTAAACTTCACTTTACTATCCTATTTAATTAATAAGGGTTTAAAGGTAGTTAATAAATTATA-----ATTAATTTAGGAAATGACTGTTTTGT-CCTTATTAAAGTAATTCAAATT-TTAAATGCTTGTAATTTTCATTAGTTCAATCAAGT-AAGACATCCCCATTCCAATTAAACCTAAGCTAAC-----TTACTTTACTGTTAGTCCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110694977 625 - 189454096 tgagagttagtacacagaaat-cggtatgaaggtacatgaata--cattttaa-----tttttt---tctgttggaatgagtccctagctttcatcaaactctcgaa-gggatcTATttttgttctgataaatcctcagctctcag---cacaa-----tgcctggtatataaggcatacctaagaaacatcagttgaCTTATGTGTGTCAAGTTCTCAACCACA-----GA-AAAGTTAATAACTACTGAAACAGAGTAAAATAGAATA---CAGTCATTCTCTGGAAAATAATCCTCACTAGTTCCCATCACCAGAATGCTCTCCCTA---TACAGAGTCTTTCATCATCCTGCTGTTCCAAGTCCTGG----ATTACACCATGCTGTGCTTGTCTATTAAACC-AATAGAGAAAGATGTTTAAAATTACTATTTCATCTCCTTCAGGAAATCATCCATCTTTTAAACTTCACTTTACTATCCTATTTAATTAATAAGGGTTTAAAGGTAGTTAATAAATTATA-----ATTAATTTAGGAAATGACTGTTTTGT-CCTTATTAAAGTAATTCAAATT-TTAAATGCTTGTAATTTTCATTAGTTCAATCAAGT-AAGACATCCCCATTCCAATTAAACCTAAGCTAAC-----TTACTTTACTGTTAGTCCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13263038 625 + 26754465 tgagagttagtacacagaaat-cggtatgaaggtacatgaata--cattttaa-----tttttt---tctgttggaatgagtccctagctttcatcaaactctcgaa-gggatcTATttttgttctgataaatcctcagctctcag---cacaa-----tgcctggtatataaggcatacctaagaaacatcagttgaCTTATGTGTGTCAAGTTCTCAACCACA-----GA-AAAGTTAATAACTACTGAAACAGAGTAAAATAGAATA---CAGTCATTCTCTGGAAAATAATCCTCACTAGTTCCCATCACCAGAATGCTCTCCCTA---TACAGAGTCTTTCATCATCCTGCTGTTCCAAGTCCTGG----ATTACACCATGCTGTGCTTGTCTATTAAACC-AATAGAGAAAGATGTTTAAAATTACTATTTCATCTCCTTCAGGAAATCATCCATCTTTTAAACTTCACTTTACTATCCTATTTAATTAATAAGGGTTTAAAGGTAGTTAATAAATTATA-----ATTAATTTAGGAAATGACTGTTTTGT-CCTTATTAAAGTAATTCAAATT-TTAAATGCTTGTAATTTTCATTAGTTCAATCAAGT-AAGACATCCCCATTCCAATTAAACCTAAGCTAAC-----TTACTTTACTGTTAGTCCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4164282 625 - 5137665 tgagagttagtacacagaaat-cggtatgaaggtacatgaata--cattttaa-----tttttt---tctgttggaatgagtccctagctttcatcaaactctcgaa-gggatcTATttttgttctgataaatcctcagctctcag---cacaa-----tgcctggtatataagacatacctaagaaacatcagttgaCTTATGTGTGTCAAGTTCTCAACCACA-----GA-AAAGTTAATAACTACTGAAGCAGAGTAAAAGAGAATA---CAGTCATCCTCTGGAAAATAATCCTCACTAGTTCCCATCACCAGAATGCTCTCCCTA---TACAGAGTCTTTCATCATCCTGCTGTTCCAAGTCCTGG----ATTACACCATGCTGCACTTGTCTATTAAACC-AATAGAGAAAGATGTTTAAAATTACTATTTCATCTCCTTCAGGAAATCATCCATCTTTTAAACTTCACTTTACTATCCTATTTAATTAATAAGGGTTTAAAGGTAGTTAATAAATTATA-----ATTAATTTAGGAAATGACTGTTTTGT-CCTTATTAAAGTAATTCAAATT-TTAAATGCTTGTAATTTTCATTAGTTCAATCAAGT-AAGACATCCCCATTCCAATTAAACCTAAGCTAAC-----TTACTTTACTGTTAGTCCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122879139 625 - 135778131 tgagagttagtacacagaaat-gggtatgaatgtacatgaata--cattttaa-----tttttt---tctgttggaatgagtccctagctttcatcaaactctcgaa-gggatcTATttttgttctgataaatcctcagctctcag---cacaa-----tgcctggtatataaggcatacctaagaaacatcagttgaCTTATGTGTGTCAAGTTCTCAACCACA-----GA-AAAGTTAATAACTACTGAAACAGAGTAAAATAGAATA---CAGTCATTCTCTGGAAAATAGTCCTCACTAGTTCCCATCACCAGAATGCTCTCCCTA---TACAGAGTCTTTCATCATCCTGCTGTTCCAAGTCCTGG----ATTACACCATGCTGTGCTTGTCTATTAAACC-AATAGAGAAAGATGTTTAAAATTACTATTTCATCTCCTTCAGGAAATCATCCATCTTTTAAATTTCACTTTACTATCCTATTTAATTAATAAGGGTTTAAAGATAGTTAATAAATTATA-----ATTAATTTAGGAAATGACTGTTTTGT-CCTTATTAAAGTAATTCAAATT-TTAAATGCTTCTAATTTTCATTAGTTCAATCAAGT-AAGACATCCCCATTCCAATTAAACCTAAGCTAAC-----TTACTTTACTGTTAGTCCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1980968 625 + 2427316 tgagagttagtacacagaaat-cggtatgaaggtacatgaata--cattttaa-----tttttt---tctgttggaatgagtccctagctttcatcaaactctcgaa-gggatcTATttttgttctgataaatcctcagctctcag---cacaa-----tgcctggtatataaggcatacctaagaaacatcagttgaCTTATGTGTGTCAAGTTCTCAACCACA-----GA-AAAGTTAATAACTACTGAAGCAGAGTAAAAGAGAATA---CAGTCATTCTCTGGAAAATAATCCTCACTAGTTCCCATCACCAAAATGCTCTCCCTA---TACAGAGTCTTTCATCATACTGCTGTTCCAAGTCCTGG----ATTACACCATGCTGCACTTGTCTATTAAACC-AATAGAGACAGATGTTTAAAATTACTATTTCATCTCCTTCAGGAAATCATCCATCTTTTAAACTTCACTTTACTATCCTATTTAATTAATAAAGGTTTAAAGGTAGTTAATAAATTATA-----ATTAATTTAGGAAATGACTGTTTTGT-CCTTATTAAAGTAATTCAAATT-TTAAATGCTTGTAATTTTCATTAGTTCAATCAAGT-AAGACATCCCCATTCCAATTAAACCTAAGCTAAC-----TTACTTTACTGTTAGTCCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1274527 625 + 1448899 tgagagttagtacacagaaat-cggtatgaatgtacatgaata--cattttaa-----tttttt---tctgctggaatgagtccctagctttcatcaaactctcaaa-gggatcTATttttgttctgataaatcctcagctctcag---cacaa-----tgcctggtatataaggcatacctaagaaacatcagttgaCTTATGTGTGTCAAGTTCTCAACCACA-----GA-AAAGTTAATAACTACTGAAACAGAGTAAAATAGAATA---CAGTCATTCTCTGGAAAATAATCCTCACTAGTTCCCATCACCAGAATGCTCTACCTA---TACAGAGTCTTTCATCATTCTGCTGTTCCAAGTCCAGG----ATTACACCATGCTGTGCTTGTCTATTAAACC-AATAGAGAAAGGTGTTTAAAATTACTATTTCATCTCCTTCAGGAAATCATCCATCTTTTAAATTTCACTTTACTATCCTATTTAATTAATAAGGGTTTAAAGGTAATTAATAAATTATA-----ATTAATTTAGGAAATGACTGTTTTGT-CCTTATTAAAGTAATTCAAATT-TTAAATGCTTGTAATTTTCATTAGTTCAATCACAT-AAGACATCCCCATTCCAATTAAACCTAAGCTAAC-----TTACTTTACTGTTAGTCCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52996096 627 - 190850796 ttagagttagtacacagaaat-tggtatgaatgtacatgtata--cattttaa-----tttttt---tctgttggaatgagtccctagctttcatcaaa-tcttgaa-gggatcTATttttgttctgataaatcctcaggtcacag---cacag-----tgcctagtatataaggcatacttaggaaacatcagttgaCTTATGT-TGTCAAGTTCTCAACCAAC-----GA-AAAGATAATAACTACTGAAATAGGGTAAAAGAGAATC---CAGTCATTCTCCGGAAAATAATCCTCACTAGTTCCCATCCCCAGAATGCTCTACCTA---TATGGAGTCTTCCATCATCCTGCTGTTCCAAGTCCTGGATGAATTACACAATGCTGTGCCTGTCTACTAGACC-AATAGAGAAAGATGTTTAAAATCACTATTTTATCTCCTTCAAGAAATCATCCATCTTTTAAATTTCACTTTACTATCTTATTTAATTAATAAGGGTTTAAAGGTATTTAATAAGTTATA-----ATTAATTTAGAAAATGACTGTTTTGT-CCCTATTAAAGTAATTCAAATT-TTAAATGCTTGCAATTTTCATTAGTTCAATCAAGT-AAGACATCCCAGTTCCAATTAAACCTAACCTAAC-----TTACTTTACTGTTAGTCCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8159912 628 - 15139346 tgagagttagtacacagaaat-tggtaggaatgtacatgtata--cattttaa-----tttttt---tctgttggaatgagtccctagctttcatcaaagtcttgaa-gggatcTATttttgttctgataaatcctcaggtcacag---cacaa-----tgcctagtatataagaaatacttaggaaacatcagttgaCTTATGT-TGTCAAGTTCTCAACCAAG-----GA-AAAGATAATAACTACTGAAAAGGGGTTAAAGAGAATA---CAGTCATTCTCTGGAAAATAATCCTCACTAGTTCCCATCCCCAGAATGCTCTACCTA---TACGGAGTCTTTCATCATCCTGCTGTTTCAAGTCCTGGATGAATTACACAATGCTGTGCTTGTCTACTAGGCC-AATAGAGAAAGACGTTTAAAATCACTATTTTATCTCCTTCAGGAAATCACCCATCTTTTAAATTTCACTTTACTATCCTATTTAATTAATAAGGGTTTAAAGGTAGTTAATAAGTTATA-----ATTAATTTAGAAAATGACTGTTTTGT-CCTTATTAAAGTAATTCAATTT-TTAAATGCTTGTAATTTTCATTAGTTCAATCAAGT-AAGACATCCCAATTCCAATTAAACATAAGCTAAC-----TTACTTTACTGTTAGTCCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6943827 629 - 7304997 tgagagttagtacacagaaat-tggtatgaatgtacatgtata--cattttaa-----tttttt---tctgttggaatgagtccctagctttcataaaagtcttgaa-gggatcTATttttgttctgataaatcctcaggtcacag---cacaa-----tgcctagtatacaaggcatacttaggaaacatcagttgaCTTATGT-TGTCAAGTTCTCAACCAAG-----GA-AAAGATAATAACTACTGAAATAGGGTAAAAGAGAATA---CAGTCATTCTCTGGAAAATAATCCTCACTAGTTCCCATCCCCAGAATGCTCTACCTA---TACAGAGTCTTTCATCATCCTGCTGTTCCAAGTCCTGGATGAATTACACAATGCTGTGCTTGTCTACTAGGCC-AATAGAGAAAGATGTTTAAAATCACTATTTTATCTCCTTCAGGAAATCATCCATCTTTTAAATTTCACTTTACTATCCTATTTAATTAATAAGGGTTTAAAGGTAGTTAATAAGTTATA-----ATTAACTTAGCAAATGACTGTTTTGT-CCTTATTAAAGTAATTCAAATT-TTAAATGCTTGTAATTTTCATTAGTTCAATCAAGTAAAGACGTCCCGATTCCAATTAAACCTAAGCTAAC-----TTACTTTACTGTTAGTCCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9361933 628 - 11631747 tgagagttagtacacagaaat-tggtatgaatgtacatgtata--cattttaa-----ttttct---tctgttggaataagtccctagctttcatcaaagtcttgaa-gggatcTATttttgttctgataaatcctcaggtcacag---cacaa-----tgcctagtatataaggcatacttaggaaacatcagttgaCTTATAT-TGTCAAGTTCTCAACCAAG-----GA-AAAGATAATAACTACTGAAATAGGGTAAAAGAGAATA---CAGCCATTCTCTGGAAAATAATCCTCACTAGTTCTCATCCCTAGAATGCTCTACCTA---TACAGAGTCTTTCATCGTCCTGCTATTCCAAGTCCTGGATGAATTACACAATGCTGTGCTTGTCTACTAGACC-AATAGAGAAAGATGTTTAAAATCACTATTTTATCTCCTTCAGGAAATCATCCATCTTTTAAATTTCACTTTACTATCCTATTTAATTAATAAGGGTTTAAAGGTAGTTAATAAGTTATA-----ATTAATTTAGAAAATGATTGTTTTGT-CCTTATTAAAGTAATTCAAATT-CTAAATGCTTGTAATTTTCATTAGTTCAATCAAGT-AAGACATCCCAATTCCAATTAAACCTAAGCTAAC-----TTACTTTACTGTTAGTCCA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1763658 628 + 3286835 TAAGAGTTAgtacacaaaaac-tggtgtgaatgtgcgtgtata--cattttaa------ttctt---tctgttagaatgagtccatagcttttgtcaaattctcaaaggggATCTATttttgttcagataaatccttagcttccag---cacaa-----tgcttggcatataagagatacacagaaaacattagttgaCTTATATGTGTCAGGTTAT----CAAG-----GA-GAAATTAATAACCACTGAAATTGAATAAAATAAAATA---CAGTTGTGCTCTGTAAAATAATCCTCACTATTTTCTGCCCCCAGAATGCTCTACCTGGAGCATGGAGTCTTTCATCATCCTGTTGTTCCAAGTCCCGGATGAATTACACAATGCTGTGCTTGTCTATTAAACC-AATTAAGAAAG--ATTTAAAATCACAATTTCATCTCCTTTAGGAAATCATCCATCTTTTTAATTTAACTTTACTATCCTATTTAATTAATAAGGGTTTAATGACAGTTAATAAATGAAA-----ATTAATTTAGGAAATGACTGTTTTTATCTTTATTAAAATAATTCAAATTCTTAAATGCTTGTAATTTTCATTAGTTCAATCAAGT-AAGACACCTCAAATCCAATTAAATCTAAGTTATC-----TTACTTTACTGTTAGTCCA i micMur3.chrUn_NW_017968520v1 C 0 I 46 s proCoq1.NW_012140747v1 1857317 634 + 4188776 TAAGAGTTAGCACAcaaaaac-tggtgtgaatgtgcatgtata--cattttaa------ttttt---tctgttagaatgagtccctagcttttgtcaaattctcaaaggggATCTATttttgttcagataaatccttagctcccag---cacaa-----tgcctggcatataagagatactcagaaaacataagttgaCTTATATGTGTCAAGTTATCAACCAAG-----GA-GAAATTAATAACCACTGAAATTGAATAAAATAGAATA---CAGTCATGCTCTGGAAAATAATCCTCACCATTTCCTGCCCCCAGAATGCTCTACCTGGATCATGGAGTCTTTCATCATCCTGTTGTTCCAAGTCTCGGATGAATTACACAATGCTGTGCTTGTCTATTAAACC-AATTAAGAAAGATATTTAAAATCACAATTTCATCTCCTTTAGGAAATCATCCATCTTTTTAATTTAACTTTATTATCCTATTTAACTAATAAGGGTTTAATGACAGTTAATAAATGATA-----ATTAATTTAGGAAATGACTGTTTTTATCTTTATTAAAATAATTCAAATTCTTAAATGCTTGTAATTTTCATTAGTTTAATCAAGT-AAGACACCCCAAATCCAATTAAACCTAAGTTATC-----TTACTTTACTGTTAGTCCA i proCoq1.NW_012140747v1 I 10 I 46 s otoGar3.GL873602 8595456 617 + 8790067 CAAGAGTTAGTACATAAAAAC-AAGTGCGAATATGCAAGTACA--CATTTTAA------TTtttttctctgttggaatgagtccctagctttcatcaaactctcaaa-gggatcTATttttgttcagataaatctttagcatccag---aacaa-----tgcctggcatatgagagagactcagaaaac--tagttgACTTATATGTGTCAAGTTCTCAACCAAG-----GA-AAAGTTAATAACCACTGAAATTGAATAAAATAGAATA---TGGTCATGCTCTGGGAAATAATCCTGACCATTTTCTGCCTCCAGCATGCTCTGTCTG---TATGGAGTCTCTCATTGTCCTCTCACTCTGAGTCCCAGATGAATCATACAGTGCTGT-------------ACC-AGTTAAGAAAGATACTTGAAATCATAATTTCATCTCCTTTAGGGAATCATCCATCTTTTTAATTTAACTTTAGTATCCTATTTAATGTATAAGGGCTTAATGACAGTTAATAAATGATA-----ATTAATTTAGGAAATGACTGTTTTGA-CTTTACTGAAATAATTCAAATTTTCAAATGCTTGTAATTTTCATTAGTTCAATAAAGT-AAGACATCCTAAATCCAATTAAATCTAAGTTGCC-----TTACTTTACTATTAGACCA i otoGar3.GL873602 C 0 I 7 s mm10.chr5 76402091 623 + 151834684 TGAGTGTGAGCAAGAATAAGTCTGGGGTGGTGATAAATGTGTAACCAAGTAGT-----TATTGT---TCTATTGGATGAAGTCTGCAGATTCCATCAAATTCTCAAA-GAAGCTTATTTTTGTTCAGATAAATACTCATCTCCCTG---CCAAATAAATTGTCCTACATACTAGAGATAATCTATAAACATTAGCTGTCTGA-GTGTGTCAAATTCTCAATCAAGAACCTGA-GTAGCT-ATTTCTACTGGAATAGAAGAAAGAGGAACAGAGGAGCCATGCCT--GGAAGTAATCCTCTAAAGCGGTCGT------AAGGCTCCACCTG---TATAAG--CATCCTTCATCCTCCTGCTCCAGGTCCCTGCTCAACTGTGCAATGGTGCGCTT-CCAAGCAAAGC-AATGTCGA-AGATGCTTGAAATCACAATTTTATTCCCTTTAGGAAATCATTTATCTTTTTAATTTAACTTTCTCATCTGACTTAATTAACAAAGGCTTAATGAGAACTAATAAACGATAT----ATTAATT----AAGTGATTTTTATGC-------TAAAGTAATACAAACTTTTAATTGCTTATAATTTTCATTAATTCAATCAAGT-AAGATGCTCTTAGGTCAGTTAAACCTGATGTATA-----TTGCTTTACTGATAGTCCA i mm10.chr5 C 0 I 7 s canFam3.chr13 47968699 626 + 63241923 tgagagtttgtgtgcaaaaac-tgttataaatatgca-gtata--tatttaat-----tttttt---tctcttggaaggagtccttagctttcaccaaattctcaaa-aagatctatttt-gttcaaataaatccttagctcctatgcctacaa-----tgcctgg-gtataagagataattggtaaacattagttgaCTTATGTATATTGAATTCTTAACCAAG-----AA-AAAGTTAATAACCACTGAAATAGAACAAAAAAGAATA---CAGTCATTCTCTGG-AAATGATCCCTACTCTCTCCTGTTCTTATAATGCTCTACCTG---TGTGG--TCTTTCATCACCCTGAAGTTCCAAGTCCTAGATGAATTATACACTACTGTGCTTGTCTATTAAACC-AATTAAGAAAGATATTT-AAATCACAACTTCATCTCCTTTAGGAAATTATCCATCTTTTT-ATTTAACTTT-CCATTCTATTTAATTAACAAGGGCTTAATAGCAGttaataaattatatattaattaatttaGGAAATTAC---TTTGT-CCTTATTAAAGTAATTCAAATTTTTAAATGCTTGTAATTTGCACTGGTTCCATCAAGC-AAGACATACTACATTCAATTAAATCTGAGTTACC-----TTATTTTGCCATTAGTCCA i canFam3.chr13 I 1 I 7 s dasNov3.JH568349 4076525 619 - 5279953 TGTGAGTTTGTGTGCTAAAAT-TGGCATGAAT-----TGCATA--CATACTAAAACTTTTTTTT---TCTGTTGGAGAGAATCC--------CATCAAATTCTCAAA-AGGATCTATTTTTGTTCAAATAAATCCTTAGCTATC-----CACTA-----TGCCTGGCATAT--GACATACTTAGTTAACATTAGTTGATTTGAGTTTGTTGAGTTCTTCACCAAA-----AACAAAATTAACAACCACTAAAATAGAGTAAAACAGAATC---TATTCATTCTCTGGAAAATAATCCTCACTATTTTCTGCTTCCCTAAAGCTCTACTTG---TATGGA-TCCTTTATCATCTTGTTGTTTCAAGCCCTGAATGAATTATATAATGCTGTGCTTATCTCTTAAATCAAATAAAAAAAGATGTTC-AAATCACAATTTCATCTCCTTTAGGAAATCATCCATTTTTTTAATTTAATGTTACAATTCTATTTAATTAACAAGGGCCTAGAGGCAGTTAATAAATGATATATTAATTAATTTAGGAGATGACTGTTTTGG-CCCTATTAAAGTAATTCAAATTTTCAAATGATTGTAATTTTCATTAGTTCAATC-----AAGACATACCAAATCCAATTAAATCCAAGTTACC-----TTACTTCACTGTTAGTCCA i dasNov3.JH568349 C 0 C 0 a score=454574.000000 s hg38.chr4_KI270787v1_alt 40760 39 + 111943 -------GGGAAAATCTCTGATACATTGAGCACATGTGATAGAATG s panTro5.chr4 119605802 39 - 194502333 -------GGGAAAATCTCTGATACATTGAGCACATGTGATAGAATG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121019379 39 - 195804263 -------GGGAAAATCTCTGATACATTGAGCACATGTGATAGAATG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4450517 39 - 17550833 -------GGGAAAATCTCTGATACATTGAGCACATGTGATAGAATG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69323498 39 - 118206036 -------GGGAAAATCTCTGATACATTGAGCACATGTGATAGAATG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111527461 39 - 190429646 -------GGGAAAATCTCTGATACATTGAGCACATGTGATAGAATG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110695602 39 - 189454096 -------GGGAAAATCTCTGATACATTGAGCACATGTGATAGAATG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13263663 39 + 26754465 -------GGGAAAATCTCTGATACATTGAGCACATGTGATAGAATG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4164907 39 - 5137665 -------GGAAAAATCTCTGATACATTGAGCACATGTGATACAATG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122879764 39 - 135778131 -------GGGAAAATCTCTGATACATTGAGCACATGTGATAGAATG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1981593 39 + 2427316 -------GGGAAAATCTCTGATACATTGAGCACATGTGATACAATG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275152 39 + 1448899 -------GGGAAAATCTCTGATACATTGAGCACATGTGATAGAATG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52996723 37 - 190850796 -------GGGAAAATCTCTAATATAC--TGCACATGTTATAGAACA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8160540 37 - 15139346 -------GGGAAAATCTCTGATACAC--AGCACATGTGATAGAACA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6944456 37 - 7304997 -------GGGAAAATCTCTGATACAC--AGCACATGTGATAGAACA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9362561 37 - 11631747 -------GGGAAAATCTCTGATACAC--AGCACATGTGATAGAACA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8596080 39 + 8790067 -------GGAAAAAATTCTAGTACATCCGGAGTATATGATGGAACA i otoGar3.GL873602 I 7 C 0 s mm10.chr5 76402721 38 + 151834684 -------AGGAAAATCTCTAGTACATTTTGAATAC-TCAGAGAAAG i mm10.chr5 I 7 I 1 s canFam3.chr13 47969332 39 + 63241923 -------GAGAAAACCCCCAGTGTATTCAGGATATATGCTGGAACA i canFam3.chr13 I 7 C 0 s dasNov3.JH568349 4077144 46 - 5279953 AGTACCATGAAAAATCTCTAGTGCATCCAGATCGTGAGCTGAAATG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1857951 46 + 4188776 I e micMur3.chrUn_NW_017968520v1 1764286 46 + 3286835 I a score=176254.000000 s hg38.chr4_KI270787v1_alt 40799 22 + 111943 ATTATTAAAACTGTGACTT---TGA s panTro5.chr4 119605841 22 - 194502333 ATTATTAAAACTGTGACTT---TGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121019418 22 - 195804263 ATTATTAAAACTGTGACTT---TGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4450556 22 - 17550833 ATTATTAAAACTGTGACTT---TGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69323537 22 - 118206036 ATTATTAAAACTGTGACTT---TCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111527500 22 - 190429646 ATTATTAAACCCCCGCCTT---TGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110695641 22 - 189454096 ATTATTAAAATTGTGACTT---TGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13263702 22 + 26754465 ATTATTAAAATTGTTACTT---TGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4164946 22 - 5137665 ATTATTAAAACTGTGACTT---TGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122879803 22 - 135778131 ATTATTAAAACTGTGACTT---TGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1981632 22 + 2427316 ATTATTAAAACTGTGACTT---TGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275191 22 + 1448899 ATTACTAAAACTGTGACTT---TGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52996760 13 - 190850796 ATTATTAAAAT------------GA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8160577 13 - 15139346 GTTATTAAAAC------------GA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6944493 13 - 7304997 ATTATTAAAAT------------GA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9362598 13 - 11631747 ATTATTAAAAC------------AA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1764332 22 + 3286835 ATTATTAAAACTGTGACTTTGA--- i micMur3.chrUn_NW_017968520v1 I 46 I 4355 s proCoq1.NW_012140747v1 1857997 19 + 4188776 ATTATTAAAACTGTGACTT------ i proCoq1.NW_012140747v1 I 46 C 0 s otoGar3.GL873602 8596119 19 + 8790067 ATTGTTAAAACCATGACTT------ i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76402760 21 + 151834684 ATCATTAAAAGT-TGACTT---TGG i mm10.chr5 I 1 I 5 s canFam3.chr13 47969371 13 + 63241923 ATTATCAAAACAG------------ i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4077190 22 - 5279953 ATCAttaaaactatgactt---tgc i dasNov3.JH568349 C 0 C 0 a score=183314.000000 s hg38.chr4_KI270787v1_alt 40821 26 + 111943 TAACT-TAATTATTT-------------------CTGTAAAG-----------------------AAAA s panTro5.chr4 119605863 26 - 194502333 TAACT-TAATTATTT-------------------CTGTAAAG-----------------------AAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121019440 26 - 195804263 TAACT-TAATTATTT-------------------CTGTAAAG-----------------------AAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4450578 25 - 17550833 TAACT-TAATTATTT-------------------CTGTAAAG------------------------AAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69323559 26 - 118206036 TAACT-TAATTATTT-------------------CTGTAAAG-----------------------AAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111527522 28 - 190429646 TAACT-TAATTAATT-------------------CTGTAAAGA---------------------AAAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110695663 27 - 189454096 TAACT-TAATTATTT-------------------CTGTAAAG----------------------AAAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13263724 27 + 26754465 TAACT-TAATTATTT-------------------CTGTAAAG----------------------AAAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4164968 27 - 5137665 TAACT-TAATTATTT-------------------CTGTAAAG----------------------AAAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122879825 26 - 135778131 TAACT-TAATTATTT-------------------CTGTAAAG-----------------------AAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1981654 27 + 2427316 TAACT-TAATTATTT-------------------CTGTAAAG----------------------AAAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275213 26 + 1448899 TAACT-TAATTATTT-------------------CTGTAAAG-----------------------GAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52996773 25 - 190850796 TAGCT-TGATTATTT-------------------CTGTAAAG------------------------AAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8160590 25 - 15139346 TATCT-TGATTATTT-------------------CTGTAAAG------------------------AAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6944506 25 - 7304997 TAGCT-TGATTATTT-------------------CTGTAAAG------------------------AAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9362611 25 - 11631747 TAGCT-TGATTATTT-------------------CTGTAAAG------------------------AAA i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76402786 69 + 151834684 GAACTGTAGTCAATTGGTATAGCACTCGGCTAACCTGCAAAAGCCCGATTTTATCCATCTCCACCACAA i mm10.chr5 I 5 C 0 s dasNov3.JH568349 4077212 18 - 5279953 ----------------------------aaaagcatataaag-----------------------aaaa i dasNov3.JH568349 C 0 I 6060 e proCoq1.NW_012140747v1 1858016 0 + 4188776 C e micMur3.chrUn_NW_017968520v1 1764354 4355 + 3286835 I e otoGar3.GL873602 8596138 0 + 8790067 C e canFam3.chr13 47969384 0 + 63241923 C a score=209816.000000 s hg38.chr4_KI270787v1_alt 40847 18 + 111943 AAAAATGTGACTCTGAAA s panTro5.chr4 119605889 18 - 194502333 AAAAATGTGACTCTAAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121019466 18 - 195804263 AAAAATGTGACTCTAAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4450603 18 - 17550833 AAAAATGTGACTCTGAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69323585 18 - 118206036 AAAAATGTGACTCTGAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111527550 18 - 190429646 AAAAATGTGACTTTGAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110695690 18 - 189454096 AAAAATGTGACTTTGAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13263751 18 + 26754465 AAAAATGTGACTTTGAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4164995 18 - 5137665 AAAAATGTGACTTTGAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122879851 18 - 135778131 AAAAATGTGACTTTGAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1981681 18 + 2427316 AAAAATGTGACTTTGAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275239 18 + 1448899 AAAAATGTGACTTTGAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52996798 18 - 190850796 ATAAATGTGACTTTGAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8160615 18 - 15139346 ATAAATGTGACTTTGAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6944531 18 - 7304997 ATAAATGTGACTTTGAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9362636 18 - 11631747 ATAAACGTGACTTTGAAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1768709 18 + 3286835 AAAACTGTGACTTTGAAA i micMur3.chrUn_NW_017968520v1 I 4355 C 0 s proCoq1.NW_012140747v1 1858016 5 + 4188776 -------------TGAAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8596138 5 + 8790067 -------------TGGAA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76402855 18 + 151834684 CTACTCTTGGCTTTCATA i mm10.chr5 C 0 C 0 s canFam3.chr13 47969384 10 + 63241923 --------GACTTTGAAA i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4077230 6060 - 5279953 I a score=1800124.000000 s hg38.chr4_KI270787v1_alt 40865 113 + 111943 AAGGCAGGGAAATGCCTTGGGTCCAAGACAGGTGGTATCATAAGCAGAGagcagcagccccatggag----taggtgctcaatacatatgtgatgaag-caatgaatTAAAAAGAAGT s panTro5.chr4 119605907 113 - 194502333 AAGGCAGGGAAATGCCTTGGGTCCAAGACAGGTGGTATCATAAGCAGAGAGCAGCAGCCCCATAGAG----TAGGTGCTCAATACAGATGCGATGAAG-CAATGAATTAAAAAGAAGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121019484 113 - 195804263 AAGGCAGGGAAATGCCTTGGGTCCAAGACAGGTGGTATCATAAGCAGAGAGCAGCAGCCCCATAGAG----TAGGTGCTCAATACAGATGCGATGAAG-CAATGAATTAAAAAGAAGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4450621 113 - 17550833 AAGGCAGGGAAATGCCTTGGGTCCAAGACAGGTGGTATCATAAGCAGagagcagcagccccatagag----taggtgctcaatacatatgcgatgaag-caatgaatTAAAAAGAAGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69323603 113 - 118206036 AAGGCAGGGAAATGCCTTGGGTCCAAGACAGGTGGTATCATAAGCAGagagcagcagccccatagag----taggtgctcaatacatatgtgatgaag-caatgaatTAAAAAGAAGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111527568 113 - 190429646 AAAGCAGGGAAATGCCTTGGGTCCAAGACAGGTGGTATCATAAGCAGAGAGcagcggccccatagag----taggtgctcaatatatgtgtgatgaag-caatgaatTAAAAAGAAGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110695708 113 - 189454096 AAGGCAGGGAAATGCCTTGGGTCCAAGACAGGTGGTATCATAAGCAGAGAGcagcggccccatagag----taggtgctcaatatatgtgtgatgaag-caatgaatTAAAAAGAAGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13263769 113 + 26754465 AAGGCAGGGAAATGCCTTGGGTCCAAGACAGGTGGTATCATAAGCAGAGAGcagcggccccatagag----taggtgctcaatatatgtgtgatgaag-caatgaatTAAAAAGAAGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165013 113 - 5137665 AAGGCAGAGAAATGCCTTGGGTCCAAGACAGGTGGTATCATAAGCAGAGAGcagcagccccatagag----taggtgctcaatatatgtgtgatgaag-caatgaatTAAAAAGAAGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122879869 113 - 135778131 AAGGCAGGGAAATGCCTTGGGTCCAAGACAGGTGGTATCATAAGCAGAGAGcagcggccccatagag----taggtgctcaatatatgtgtgatgaag-caatgaatTAAAAAGAAGT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1981699 113 + 2427316 AAGGCAGGGAAATGCCTTGGGTCCAAGACAGGTGGTATCATAAGCAGAGAGcagcggccccatagag----taggtgctcaatatatgtgtgatgaag-caatgaatTAAAAAGAAGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275257 113 + 1448899 AAGGCAGGGAAATGCCTTGGGTCCAAGACAGGTGGTATCATAAGCAGAGAGcagcggccccatagag----taggtgctcaatatatgtgtgatgaag-caatgaatTAAAAAGAAGT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52996816 113 - 190850796 AAGGCAGGGAAATGCCTAGGGTCCAAGACAGGTGGTATCAGAAGCAGagagcagcagccccatagag----taggtgctcaatacatatgtgatgaag-gaatgaatACAAAAGAAGT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8160633 113 - 15139346 AAGGCAGGGAAATGCCTAGAGTCCAAGACAGGTGgtatcacaagcagagagcagcagccccatagag----taggtgctcaatacatatgtgatgaag-gaatgaatAAAAAAGAAAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6944549 113 - 7304997 AAGGCAGGGAAATGCCTAGGGTTCAAGACAGGAGgtatcacaagcagagagcagcagccccacagag----taggtgctcaatacatacgtgatgaag-gaatgaatAAAAAAGAAGT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9362654 113 - 11631747 AAGGCAGAGAAATGCCTAGGGTCCAAGACAGGTGgtatcacaagcagagagcagcagccccatagag----taggtgctcaatacatatgtgatgaag-gaatgaatAAAAAAGAAGT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1768727 117 + 3286835 AGAGCAAGGAAATGCCTTGGGCCTAAGACATGTGGTATCATAAGCAGAGAACAGcagcaccatagagtaagtaggcactcaataaatagttgatgaac-caatgaatTAAGAAGAGGT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1858021 117 + 4188776 AGAGCAAGGAAATGCCTTGGGCCTAAGAAATGTGGTATCATAAGCAGAGAACAGcagcaccatagagtaagtaggtgctcaataaatagtcgatgaac-caatgaatTAAGAAGAGGT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8596143 116 + 8790067 AAGGCCAGGAAATGCTTTGGGCCTAAGACATGTGGTATTATACGCAGACAACagcagtgccgggcagtaa-caggttctcaataaatagttgacaaac-caatgaatTAAGAAGAGGT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76402873 107 + 151834684 ATAATATGGAAATACTTTGGACCCAACAAATCTGA---CATAATCAGAAAGCAGAAGCACTGCAGAT-------GTGGTCAATAAACATATAAGGGGGTCAATAAATTAA-AAGAAGT i mm10.chr5 C 0 C 0 s canFam3.chr13 47969394 111 + 63241923 AAAGCAGGGTAATGCCTTAAGCACAAGACATGTAGTATTATAAACAGAGAACAGCAGAACCATAGAT----TAGGTGTTTGATAAATATTTGACAAAT-CAATGAA--AGAAAGAACT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4083290 110 - 5279953 AAGTCAGAGAAATGCCTTGAGCCCAAGACAT---GCCTCATAAGCAGAGAGCAGCAGCACTAGAGAG----TGCGTGCACAAAAATTGTTTGGTGAAT-CAGTGAAAGGAAAAGCAGT i dasNov3.JH568349 I 6060 I 10 a score=35610.000000 s hg38.chr4_KI270787v1_alt 40978 2 + 111943 AG s panTro5.chr4 119606020 2 - 194502333 AG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121019597 2 - 195804263 AG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4450734 2 - 17550833 AG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69323716 2 - 118206036 AG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111527681 2 - 190429646 AG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110695821 2 - 189454096 AG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13263882 2 + 26754465 AG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165126 2 - 5137665 AG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122879982 2 - 135778131 AG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1981812 2 + 2427316 AG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275370 2 + 1448899 AG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52996929 2 - 190850796 AG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8160746 2 - 15139346 AG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6944662 2 - 7304997 AG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9362767 2 - 11631747 AG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1768844 2 + 3286835 AG i micMur3.chrUn_NW_017968520v1 C 0 I 149 s proCoq1.NW_012140747v1 1858138 2 + 4188776 AG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8596259 2 + 8790067 AG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76402980 2 + 151834684 AC i mm10.chr5 C 0 C 0 s canFam3.chr13 47969505 2 + 63241923 AG i canFam3.chr13 C 0 I 12 e dasNov3.JH568349 4083400 10 - 5279953 I a score=12637.000000 s hg38.chr4_KI270787v1_alt 40980 1 + 111943 C s panTro5.chr4 119606022 1 - 194502333 C i panTro5.chr4 C 0 C 0 s panPan2.chr4 121019599 1 - 195804263 C i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4450736 1 - 17550833 C i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69323718 1 - 118206036 C i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111527683 1 - 190429646 C i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110695823 1 - 189454096 C i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13263884 1 + 26754465 C i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165128 1 - 5137665 C i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122879984 1 - 135778131 T i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1981814 1 + 2427316 C i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275372 1 + 1448899 C i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52996931 1 - 190850796 C i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8160748 1 - 15139346 C i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6944664 1 - 7304997 C i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9362769 1 - 11631747 C i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1858140 1 + 4188776 C i proCoq1.NW_012140747v1 C 0 I 115 s otoGar3.GL873602 8596261 1 + 8790067 T i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76402982 1 + 151834684 C i mm10.chr5 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e dasNov3.JH568349 4083400 10 - 5279953 I e canFam3.chr13 47969507 12 + 63241923 I a score=13923.000000 s hg38.chr4_KI270787v1_alt 40981 1 + 111943 T s panTro5.chr4 119606023 1 - 194502333 T i panTro5.chr4 C 0 C 0 s panPan2.chr4 121019600 1 - 195804263 T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4450737 1 - 17550833 T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69323719 1 - 118206036 T i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111527684 1 - 190429646 T i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110695824 1 - 189454096 T i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13263885 1 + 26754465 T i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165129 1 - 5137665 T i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122879985 1 - 135778131 T i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1981815 1 + 2427316 T i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275373 1 + 1448899 T i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52996932 1 - 190850796 T i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8160749 1 - 15139346 T i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6944665 1 - 7304997 T i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9362770 1 - 11631747 T i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8596262 1 + 8790067 T i otoGar3.GL873602 C 0 I 11 s mm10.chr5 76402983 1 + 151834684 T i mm10.chr5 C 0 I 636 e proCoq1.NW_012140747v1 1858141 115 + 4188776 I e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e dasNov3.JH568349 4083400 10 - 5279953 I e canFam3.chr13 47969507 12 + 63241923 I a score=2758149.000000 s hg38.chr4_KI270787v1_alt 40982 280 + 111943 ggccgggcatggtggctcacacctgtaatcccagcactttgggaggctgaggtaggcagatcacctgaggtcaggagtttgagagtagcttggccaacatggcaaaaccccattgctactaaaaatacaaaaagtcagtcaggcatggtggtgcatgcctgtaatcccagctactcgggaggctaaggcatgagaatcacttgaacccaggaggtggaggttgcagtgagccaagattgtgccactgcactccagcctgggcgacagagcgagactgtgt s panTro5.chr4 119606024 280 - 194502333 ggccaggcatggtggctcacacctgtaatcccagcactttgggaggctgaggcaggcagatcacctgaggtcaggagtttgagagtagcttggccaacatggcaaaaccccattgctactaaaaatacaaaaagtcagtcaggcatggtggtgcatgcctgtaatctcagctactcgggaggctaaggcgtgagaatcacttgaacccaggaggtggaggttgcagtgagccaaaattgtgccactgcactccagcctgggcgacagagcgagactgtgt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121019601 280 - 195804263 ggccgggcatggtggctcacacctgtaatcccagcactttgggaggctgaggcaggcagatcacctgaggtcaggagtttgagagtagcttggccaacatggcaaaaccccattgctactaaaaatacaaaaagtcagtcaggcatggtggtgcatgcctgtaatctcagctactcgggaggctaaggtgtgagaatcacttgaacccaggaggtggaggttgcagtgagccaaaattgtgccactgcactccagcctgggcgacagagcgagactgtgt i panPan2.chr4 C 0 M 20 s gorGor5.CYUI01014963v1 4450738 280 - 17550833 ggccgggcatggtggctcacacctgtaatcccagcactttgggaggctgaggcaggcagatcacctgaggtcaggagtttgagagtagcttggccaacatggcaaaaccccattgctactaaaaatacaaaaagtcagtcaggcatggtggtgcatgcctgtaatcccagctacttgggaggctaaggcatgagaatcacttgaacccaggaggtggaggttgcagtgagccaagattgtgccactgcactccagcctgggcgacagagcgagactgtgt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69323720 280 - 118206036 ggccgggcacggtggctcacacctgtaatcccagcactttgggaggctgaggcaggcagatcacctgaggtcaggagtttgagagtagcttggccaacatggcaaaaccccattgctactaaaaatacaaaaagtcagtcaggcatggtggttcatgcctataatcccagctactcgggaggctaaggcatgagaatcacttgaacccaggaggcggaggttgcagtgagccaagattgtgccactgcactccagcctgggcgacagagcaagactgtgt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111527685 272 - 190429646 ggccaggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagagcacctgaggtcaggagtttgagagtagcttggccaacgtggcaaaaccccattgctactaaaaatacaaaaaattagccaggcatggtggtgcatgcctgtaatcccagctacttaggaggctgaggcacgagaatcacttgaacccaggagacaaaggttgcagtgagccaagattgtgccactgcactccagcctgg--------gctggactgtgt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110695825 272 - 189454096 ggccaggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagagcacctgaggtcaggagtttgagagtagcttggccaacgtggcaaaaccccattgctactaaaaatacaaaaaattagccaggcatggtggtgcatgcctgtaatcccagctacttaggaggctgaggcacgagaatcacttgaacccaggagacaaaggttgcagtgagccaagattgtgccactgcactccagcctgg--------gctggactgtgt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13263886 272 + 26754465 ggccaggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagagcacctgaggtcaggagtttgagagtagcttggccaacgtggcaaaaccccattgctactaaaaatacaaaaaattagccaggcatggtggtgcatgcctgtaatcccagctacttaggaggctgaggcatgagaatcacttgaacccaggagacaaaggttgcagtgagccaagattgtgccactgcactccagcctgg--------gctggactgtgt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165130 280 - 5137665 ggccaggcacggtggttcacgcctgtaatcccagcactttgggaggctgaagcaggcagagcacctgaggtcaggagtttgagagtagcttggccaacatggcaaaaccccactgctactaaaaatacaaaaaattagccaggcatggtggtgcatgcctgtaatcccagctactcaggaggctgaggcacgagaatcacttgaacccaggagacaaaggttgcagtgagccaagattctgccactgcactccagcctgggcgacagagcgagactgtgt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122879986 280 - 135778131 ggccaggcacggtggctcacacctgtaatcccagcactttgggaggctgaggcaggcagagcacctgaggtcaggagtttgagagtaacttggccaacatggcaaaaccccattgctactaaaaatacaaaaaattagccaggcatggtggtgcatgcctgtgatcccagctactcaggaggctgaggcacgagaatcacttgaacccaggagacaaaggttgcagtgagccaagattgtgccactgcactccagcctgggcaacagagcgagactgtgt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1981816 280 + 2427316 ggccaggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagagcacctgaggtcaggagtttgagagtagcttggccaacatggcaaaaccccattgctactaaaaatacaaaaaattagccaggcatggtggtgcatgcctgtaatcccagctactcaggaggctgaggcacgagaatcacttgaacccaggagacaaaggttgcagtgagccaagattgtgccactgcactccagcctgggcgacagagcgagactgtgt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275374 279 + 1448899 ggccgggcacagtggctcacacctgtaatcccagcactttgggaggctgaggcaggcagaacacctgaggtcaggagtttgagaggagcttggccaaca-ggcaaaaccccattgctactaaaaatacaaaaaattagccaggcatggtggtgcatgcctgtaatcccagctactcaggaggctgaggcacgagaattactttaacccaggagacagaggttgcagtgagccaagattgtgccactgcactccagcctgggcaacagagcgatactgtgt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52996933 280 - 190850796 ggccaggcatggcggctcacacctgtaatcccagcactttgagagactgaggcaggcagatcacctgaggtcaggagtttgagagcagcttggccaacatggtgaaacccggttgctactaaaaacacacaaaattagccatgtgtggcgctgcatacctgtaatcccagctactcaggaggctgaggcatgagaatcacatgaacccaggaggctgaggttgcagtgagctgagattgtgccactgcactccagcctgggtaacagagcaagactgtgt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8160750 265 - 15139346 ggccaggcatggtggctcacacctgtaatcccagcactttgagagactgaggcaggcagatcacctgaggtcaggagtttgagagcagcttggccaacatggtgaaact---------------acacaaaaaactagctgggtgtggtgctacatacctgtaatcccagctaatcaggaggctgaggcatgagaatcacatgaacccaggaggcagaggttgcagtgtgttgagatggtgccactgcactccatcctgggcaacagagtgacactgtgt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6944666 280 - 7304997 ggccaggcatggtagctcacacctgtaatcccagcactttgagagactgagggaggcagatcgcctgaggtcaggagtttgagagcagcttggccaacatggtgaaacccggttgctactaaaaacacaaaaaattagccaggtgtggtgctgcatacctgtaatcccagctactcaggaggctgaggcacgagaatcacatgaacccaggaggcagaggttgcagtgagctgaggtcgtgccactgcactccagcctgggtgacagagcgaggctgtgt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9362771 280 - 11631747 ggccaggcatggtggctctcacctgtaatcccagcactttgagtgactgaggcaggcacatcacctgaggtcaggagtttgagagaagcttggccaacatggtgaaactcggttgctactaaaatcacaaaaaattagccaggtgtggtgctgcatccctgtaatcccagctactcaggaggctgaggcacgagaatcacatgaacccaggaggcagaggttgcagtaagctgagatcgtgccactgcactccagcctgggtgacagagcgagactgtgt i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1858141 115 + 4188776 I e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e mm10.chr5 76402984 636 + 151834684 I e dasNov3.JH568349 4083400 10 - 5279953 I e otoGar3.GL873602 8596263 11 + 8790067 I e canFam3.chr13 47969507 12 + 63241923 I a score=62441.000000 s hg38.chr4_KI270787v1_alt 41262 19 + 111943 ctcaagagaaaaaaaaaaa-- s panTro5.chr4 119606304 19 - 194502333 ctcaagagaaaaaaaaaaa-- i panTro5.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4451018 19 - 17550833 ctcaagagaaaaaaaaaaa-- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69324000 19 - 118206036 ctcaagagaaaaaaaaaaa-- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111527957 12 - 190429646 ctcaagag-------aaaa-- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110696097 12 - 189454096 ctcaagag-------aaaa-- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13264158 12 + 26754465 ctcaagag-------aaaa-- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165410 17 - 5137665 ctcaagag--gaaaaaaaa-- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122880266 17 - 135778131 ctcgagag--aaaaataaa-- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1982096 18 + 2427316 ctcaagag-aaaaaaaaaa-- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275653 15 + 1448899 ctcaagag----aaaaaaa-- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52997213 18 - 190850796 ctcaagga-aggaaaaaaa-- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161015 13 - 15139346 ctcaaggg-agg-----ga-- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6944946 19 - 7304997 ctcaaggg-aggaaaaaaaa- i cebCap1.NW_016107439v1 C 0 I 15 s aotNan1.NW_018493494v1 9363051 19 - 11631747 ctcaaggg-aggaaaaaaa-a i aotNan1.NW_018493494v1 C 0 I 9 e proCoq1.NW_012140747v1 1858141 115 + 4188776 I e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e mm10.chr5 76402984 636 + 151834684 I e dasNov3.JH568349 4083400 10 - 5279953 I e otoGar3.GL873602 8596263 11 + 8790067 I e canFam3.chr13 47969507 12 + 63241923 I e panPan2.chr4 121019881 20 - 195804263 M a score=59900.000000 s hg38.chr4_KI270787v1_alt 41281 14 + 111943 --aaaagaaGCAGCTG s panTro5.chr4 119606323 12 - 194502333 --aa--gaaGTAGTTG i panTro5.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4451037 12 - 17550833 --aa--gaaGTAGCTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69324019 11 - 118206036 --aa---aaGTAGCTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111527969 12 - 190429646 --aa--aaaGTAGCTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110696109 12 - 189454096 --aa--aaaGTAGCTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13264170 12 + 26754465 --aa--aaaGTAGCTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165427 12 - 5137665 --aa--gaaGTAGCTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122880283 12 - 135778131 --aa--gaaGTAGCTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1982114 12 + 2427316 --aa--gaaGTAGCTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275668 12 + 1448899 --aa--gaaGTAGCTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52997231 14 - 190850796 aaaa--aaaGTAACCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161028 14 - 15139346 aaaa--aaaGTAACCA i saiBol1.JH378162 C 0 C 0 e proCoq1.NW_012140747v1 1858141 115 + 4188776 I e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e mm10.chr5 76402984 636 + 151834684 I e dasNov3.JH568349 4083400 10 - 5279953 I e aotNan1.NW_018493494v1 9363070 9 - 11631747 I e cebCap1.NW_016107439v1 6944965 15 - 7304997 I e otoGar3.GL873602 8596263 11 + 8790067 I e canFam3.chr13 47969507 12 + 63241923 I e panPan2.chr4 121019881 20 - 195804263 M a score=177853.000000 s hg38.chr4_KI270787v1_alt 41295 22 + 111943 ATGCTTCTAAGAGAACAGAAAA s panTro5.chr4 119606335 22 - 194502333 ATACTTCTAAGAGAACAGAAAA i panTro5.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4451049 22 - 17550833 ATGCTTCTAAGAGAACAGAAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69324030 22 - 118206036 ATGCTTCTAAGAGAACAGAAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111527981 22 - 190429646 ATGCTTCTAAGAGAACAGAAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110696121 22 - 189454096 ATGCTTCTAAGAGAACAGAAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13264182 22 + 26754465 ATGCTTCTAAGAGAGCAGAAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165439 22 - 5137665 ATGCTTCTAAGAGAACAGAAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122880295 22 - 135778131 ATGCTTCTAAGAGAACAGAAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1982126 22 + 2427316 ATGCTTCTAAGAGAACAGAAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275680 21 + 1448899 A-GCTTCTAAGAGAACAGAAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52997245 22 - 190850796 ATGCTTCTAAGAGAACAGAAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161042 22 - 15139346 ATGCTTCTAAGAGAACAGAAAA i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9363079 22 - 11631747 ATGCTTCTAAGAGAACAGAAAA i aotNan1.NW_018493494v1 I 9 C 0 e proCoq1.NW_012140747v1 1858141 115 + 4188776 I e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e mm10.chr5 76402984 636 + 151834684 I e dasNov3.JH568349 4083400 10 - 5279953 I e cebCap1.NW_016107439v1 6944965 15 - 7304997 I e otoGar3.GL873602 8596263 11 + 8790067 I e canFam3.chr13 47969507 12 + 63241923 I e panPan2.chr4 121019881 20 - 195804263 M a score=60798.000000 s hg38.chr4_KI270787v1_alt 41317 121 + 111943 ggccgggtgcggtggctcatgcctgtaatcccagcactttgggaggccaaggcgggcagatcatgaggtcaggagatcgagaccatcctggctaac--ggtgaaaccccgtctctactaaaaa s panTro5.chr4 119606357 123 - 194502333 ggccgggtgcggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggcagatcatgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaa i panTro5.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4451071 123 - 17550833 ggccgggtgcggtggttcatgcctgtaatcccagcactttgggaggccaaggcgggcagatcatgaggtcacgagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaa i gorGor5.CYUI01014963v1 C 0 I 1 s nomLeu3.chr9 69324052 120 - 118206036 ggccgggcgtaatggctcacacctataatcccagcactttgggaggccaaggcgggcagatcacgaggtcaggagatagagaccatcctggctaacacggtgaaatcccgtctctactaa--- i nomLeu3.chr9 C 0 C 0 e proCoq1.NW_012140747v1 1858141 115 + 4188776 I e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e mm10.chr5 76402984 636 + 151834684 I e dasNov3.JH568349 4083400 10 - 5279953 I e aotNan1.NW_018493494v1 9363101 0 - 11631747 C e cebCap1.NW_016107439v1 6944965 15 - 7304997 I e saiBol1.JH378162 8161064 0 - 15139346 C e calJac3.chr3 52997267 0 - 190850796 C e otoGar3.GL873602 8596263 11 + 8790067 I e canFam3.chr13 47969507 12 + 63241923 I e colAng1.NW_012119221v1 1275701 0 + 1448899 C e manLeu1.NW_012104388v1 1982148 0 + 2427316 C e chlSab2.chr7 122880317 0 - 135778131 C e cerAty1.NW_012001307v1 4165461 0 - 5137665 C e macNem1.NW_012012466v1 13264204 0 + 26754465 C e rheMac8.chr5 111528003 0 - 190429646 C e macFas5.chr5 110696143 0 - 189454096 C e panPan2.chr4 121019881 20 - 195804263 M a score=152142.000000 s hg38.chr4_KI270787v1_alt 41438 186 + 111943 aaaaaaatac-aaaaaattagccaggtgtggtggcgggtgcctgtattcccagctactcgggaggctgaggcaggagaatggcatgaacctgggaggtggagcttgcagtgagctgagattgtgccactgcactccagcctgggtgacagagtgagaatccgtctcaaaaaaaaaaaaaaaaaaaaa s panTro5.chr4 119606480 179 - 194502333 aaaaaaatac-aaaaaattagccaggtgtggtggcgggtgcctgtattcccagctactcgggaggctgaggcaggagaatggcatgaacctgggaggtggagcttgcagtgagctgagattgtgccactgcactccagcctgggtgacagagtgagaatctgtctcaaaaaaaacaaaaa------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121019901 177 - 195804263 aaaaaaatac-aaaaaattagccaggtgtggtggcgggtgcctgtattcccagctactcgggaggctgaggcaggagaatggcatgaacctgggaggtggagcttgcagtgagctgagattgtgccactgcactccagcctgggtgacagagtgagaatctgtctc--aaaaaacaaaaa------- i panPan2.chr4 M 20 C 0 s gorGor5.CYUI01014963v1 4451195 183 - 17550833 aaaaaaatacaaaaaaattagccaggtgtggtggcgggtgcctgtattcccagctactcgggaggctgaggcaggagaatggcatgaacctgggaggtggagcttgcagtgagctgagattgtgccactgcactccagcctgggtgacacagtgagaatccatctcaaaaaaaaaaaaaa----aaa i gorGor5.CYUI01014963v1 I 1 C 0 s nomLeu3.chr9 69324172 186 - 118206036 aaaaaaatac-aaaacattagccgggtgtggtggtgggcgcctgtattcccagctacttgggaggctgaggcaggagaatggcgtgaccccggaaggtggagcttgcagtgagccgagatcgtgccactgcactccagcctgggtgacagagcgagaatccatcccagaaaaaaaaaaaaaaaaaaa i nomLeu3.chr9 C 0 C 0 e proCoq1.NW_012140747v1 1858141 115 + 4188776 I e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e mm10.chr5 76402984 636 + 151834684 I e dasNov3.JH568349 4083400 10 - 5279953 I e aotNan1.NW_018493494v1 9363101 0 - 11631747 C e cebCap1.NW_016107439v1 6944965 15 - 7304997 I e saiBol1.JH378162 8161064 0 - 15139346 C e calJac3.chr3 52997267 0 - 190850796 C e otoGar3.GL873602 8596263 11 + 8790067 I e canFam3.chr13 47969507 12 + 63241923 I e colAng1.NW_012119221v1 1275701 0 + 1448899 C e manLeu1.NW_012104388v1 1982148 0 + 2427316 C e chlSab2.chr7 122880317 0 - 135778131 C e cerAty1.NW_012001307v1 4165461 0 - 5137665 C e macNem1.NW_012012466v1 13264204 0 + 26754465 C e rheMac8.chr5 111528003 0 - 190429646 C e macFas5.chr5 110696143 0 - 189454096 C a score=422.000000 s hg38.chr4_KI270787v1_alt 41624 1 + 111943 a s gorGor5.CYUI01014963v1 4451378 1 - 17550833 a i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69324358 1 - 118206036 g i nomLeu3.chr9 C 0 C 0 s cebCap1.NW_016107439v1 6944980 1 - 7304997 A i cebCap1.NW_016107439v1 I 15 C 0 s dasNov3.JH568349 4083410 1 - 5279953 A i dasNov3.JH568349 I 10 C 0 e proCoq1.NW_012140747v1 1858141 115 + 4188776 I e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e mm10.chr5 76402984 636 + 151834684 I e aotNan1.NW_018493494v1 9363101 0 - 11631747 C e saiBol1.JH378162 8161064 0 - 15139346 C e calJac3.chr3 52997267 0 - 190850796 C e otoGar3.GL873602 8596263 11 + 8790067 I e canFam3.chr13 47969507 12 + 63241923 I e panTro5.chr4 119606659 0 - 194502333 C e colAng1.NW_012119221v1 1275701 0 + 1448899 C e manLeu1.NW_012104388v1 1982148 0 + 2427316 C e chlSab2.chr7 122880317 0 - 135778131 C e cerAty1.NW_012001307v1 4165461 0 - 5137665 C e macNem1.NW_012012466v1 13264204 0 + 26754465 C e rheMac8.chr5 111528003 0 - 190429646 C e macFas5.chr5 110696143 0 - 189454096 C e panPan2.chr4 121020078 0 - 195804263 C a score=1365.000000 s hg38.chr4_KI270787v1_alt 41625 1 + 111943 a s gorGor5.CYUI01014963v1 4451379 1 - 17550833 a i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69324359 1 - 118206036 a i nomLeu3.chr9 C 0 C 0 s cebCap1.NW_016107439v1 6944981 1 - 7304997 A i cebCap1.NW_016107439v1 C 0 C 0 s canFam3.chr13 47969519 1 + 63241923 A i canFam3.chr13 I 12 C 0 s dasNov3.JH568349 4083411 1 - 5279953 A i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1858141 115 + 4188776 I e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e mm10.chr5 76402984 636 + 151834684 I e aotNan1.NW_018493494v1 9363101 0 - 11631747 C e saiBol1.JH378162 8161064 0 - 15139346 C e calJac3.chr3 52997267 0 - 190850796 C e otoGar3.GL873602 8596263 11 + 8790067 I e panTro5.chr4 119606659 0 - 194502333 C e colAng1.NW_012119221v1 1275701 0 + 1448899 C e manLeu1.NW_012104388v1 1982148 0 + 2427316 C e chlSab2.chr7 122880317 0 - 135778131 C e cerAty1.NW_012001307v1 4165461 0 - 5137665 C e macNem1.NW_012012466v1 13264204 0 + 26754465 C e rheMac8.chr5 111528003 0 - 190429646 C e macFas5.chr5 110696143 0 - 189454096 C e panPan2.chr4 121020078 0 - 195804263 C a score=31716.000000 s hg38.chr4_KI270787v1_alt 41626 11 + 111943 gagaaCAGAAA s panTro5.chr4 119606659 11 - 194502333 gagaacagaaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121020078 11 - 195804263 gagaacagaaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4451380 11 - 17550833 gagaacagaaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69324360 11 - 118206036 gagaaCAGAAA i nomLeu3.chr9 C 0 C 0 s cebCap1.NW_016107439v1 6944982 11 - 7304997 GAGAACAGAAA i cebCap1.NW_016107439v1 C 0 I 1 s otoGar3.GL873602 8596274 11 + 8790067 GGGAGCAGGTA i otoGar3.GL873602 I 11 I 1 s canFam3.chr13 47969520 11 + 63241923 GAGAACAGAAG i canFam3.chr13 C 0 I 1 s dasNov3.JH568349 4083412 11 - 5279953 GAGAACAGAAA i dasNov3.JH568349 C 0 I 1 e proCoq1.NW_012140747v1 1858141 115 + 4188776 I e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e mm10.chr5 76402984 636 + 151834684 I e aotNan1.NW_018493494v1 9363101 0 - 11631747 C e saiBol1.JH378162 8161064 0 - 15139346 C e calJac3.chr3 52997267 0 - 190850796 C e colAng1.NW_012119221v1 1275701 0 + 1448899 C e manLeu1.NW_012104388v1 1982148 0 + 2427316 C e chlSab2.chr7 122880317 0 - 135778131 C e cerAty1.NW_012001307v1 4165461 0 - 5137665 C e macNem1.NW_012012466v1 13264204 0 + 26754465 C e rheMac8.chr5 111528003 0 - 190429646 C e macFas5.chr5 110696143 0 - 189454096 C a score=1047723.000000 s hg38.chr4_KI270787v1_alt 41637 94 + 111943 CTCTCTTTGAGCA-GAAAACTATCCACCTTAAGAACAGCTAATAGGACATCCATCAGTG-------GAGGGATAT---ATAATGGTGAGA-CCCTTGTCTAAAAGA s panTro5.chr4 119606670 94 - 194502333 CTCTCTTTGAGCA-GAAAACTATCCACCTTAAGAACAGCTAATAGGACATCCATCAGTG-------GAGGGATAT---ATAATGGTGAGA-CCCTTGTCTAAAAGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121020089 94 - 195804263 CTCTCTTTGAGCA-GAAAACTATCCACCTTAAGAACAGCTAATAGGACATCCATCAGTG-------GAGGGATAT---ATAATGGTGAGA-CCCTTGTCTAAAAGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4451391 94 - 17550833 CTCTCTTTGAGCA-GAAAACTATCCACCTTAAGAACAGCTAATAGGACATCCATCAGTG-------GAGGGATAT---ATAATGGTGAGA-CCCTTGTCTAAAAGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69324371 95 - 118206036 CTCTCTTTGAGCA-GAAAACTATCCACCTTAAGAACAGCTAATAGGACATCCATCAGTG-------GAGGGATAT---ATAATGGTGAGATCCTTTGTCTAAAAGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111528003 94 - 190429646 CTCCCTTTGAGCA-GGAAACTGTCCACCTTAAGAACAGCTGATAGGACATCCATCAGTG-------GAGGCTGAT---ACAATGGTGAGA-TCCTTGACTAAAAGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110696143 94 - 189454096 CTCTCTTTGAGCA-GGAAACTGTCCACCTTAAGAACAGCTGATAGGACATCCATCAGTG-------GAGGCTGAT---ACAATGGTGAGA-TCCTTGACTAAAAGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13264204 94 + 26754465 CTCTCTTTGAGCA-GGAAACTGTCCACCTTAAGAACAGCTGATAGGACATCCATCAGTG-------GAGGCTGAT---ACAATGGTGAGA-TCCTTGACTAAAAGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165461 94 - 5137665 CTCTCTTTGAGCA-GGAAACTGTCCACCTTAAGAACAGCTGATAGGACATCCATCAGTG-------GAGGCTGAT---ACAATGGTGAGA-TCCTTGACTAAAAGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122880317 94 - 135778131 CTCTCTTTGAGCA-GGAAACTGTCCACCTTAAGAACAGCTGATAGGACATCCATCAGTG-------GAGGCTGAT---ACAATGGTGAGA-TCCTTGACTAAAAGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1982148 94 + 2427316 CTCTCTTTGAGCA-GGAAACTGTCCACCTTAAGAACAGCTGATAGGACATCCATCAGTG-------GAGGCTGAT---ACAATGGTGAGA-TCCTTGACTAAAAGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275701 94 + 1448899 CTCTCTTTGAGCA-GGAAACTATCCACCTTAAGAATAGCTGATAGGACATCCATCAGTG-------GAGGGTGAT---ATAATGGTGAGA-TCCTTGACTAAAAGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52997267 93 - 190850796 CTCTCTTTGAGCA-GGGAACTATTCC-CTTAGGAACAGCTGATAGGACATCCATCAGTG-------GAGGGTGAT---ATAATGGTGACA-TCCTTGTCTAAAAGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161064 92 - 15139346 CTCTCTTTGAGCA-GGAAAC-ATCCA-CTTAGGAACAGCTGATGGGACATCCGTCAGTG-------GAGGGTGAT---ATAATGGTGAGA-TCCTTGTCTAAAAGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6944994 93 - 7304997 CTCTCTTTGAGCA-GGAAACTATCCA-CTTAGGAAGAGCTGATGGGACATCCATCAGTG-------GAGGATGAT---ATAATAGTGAGA-TCCTTGTCTAAAAGA i cebCap1.NW_016107439v1 I 1 C 0 s aotNan1.NW_018493494v1 9363101 93 - 11631747 CTCTCTTTGGGCA-GGAAACTATCCA-CTTAGGAACGGCTGATAGGACATCCATCAGTG-------GAGGGTGAT---ATAATGGTGAGA-TCCTTGTCTAAAAGA i aotNan1.NW_018493494v1 C 0 I 4 s otoGar3.GL873602 8596286 58 + 8790067 CCCTCTTTGAGCAGGGGAAGCATCAACCTTCAGAAC--CT---------------------------------------------TAAGA-TCCTTGTCTGAAAGA i otoGar3.GL873602 I 1 C 0 s canFam3.chr13 47969532 103 + 63241923 CCCTC-TTGAACA-GGGAGCCATCAACCTTAGGAACAGGTGATAGGGCATCCATCAATGGATAATAGAGCATGATGTAATAATGGTTGAA-TCTCTATCAGAAAAA i canFam3.chr13 I 1 C 0 s dasNov3.JH568349 4083424 94 - 5279953 TTCTCTTTGAGTA-GAGAGACAACAACCTTAAAAACAGCCAATAGGACACCCAACAATG-------GAAGGAGAG---GCAATGGTTAGA-TCCTCATCTGAGAGA i dasNov3.JH568349 I 1 C 0 e proCoq1.NW_012140747v1 1858141 115 + 4188776 I e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e mm10.chr5 76402984 636 + 151834684 I a score=370587.000000 s hg38.chr4_KI270787v1_alt 41731 37 + 111943 TCATGGTTTTTTT--GTGACCCATTGAGGAATGGTGCCA s panTro5.chr4 119606764 39 - 194502333 TCATGTTTTTTTTTTGTGACCCATTGAGGAATGGTGCCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121020183 38 - 195804263 TCATGTTTTTTTT-TGTGACCCATTGAGGAATGGTGCCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4451485 38 - 17550833 TCATGCTTTTTTT-TGTGACCCATTGAGGAATGGTGCCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69324466 36 - 118206036 TCATGTGTTTT---TGTGACCCATTGAGGAATGGTGCCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111528097 36 - 190429646 TCATGTGTTTT---TGTGACCCATTAAGGAATGGTGCCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110696237 36 - 189454096 TCATGTGTTTT---TGTGACCCATTAAGGAATGGTGCCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13264298 36 + 26754465 TCATGTGTTTT---TGTGACCCATTAAGGAATGGTGCCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165555 36 - 5137665 TCATGTGTTTT---TGTGACCCATTAAGGAATGGTGCCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122880411 36 - 135778131 TCATGTGTTTT---TGTGACCCATTAAGGAATGGTGCCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1982242 36 + 2427316 TCATGTGTTTT---TGTGACCCATTAAGGAATGGTGCCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275795 36 + 1448899 TCATGTGTTTT---TGTGACCCATTAAGGAATGATGCCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52997360 36 - 190850796 TCACATGTTTT---CATGACCTACTAAGGAATGGTGCCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161156 36 - 15139346 TCATGTGTTTT---CGTGACCCACTAAGGAATGGTGCCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6945087 36 - 7304997 TCATGTGTTTT---CGTGACCCTCTAAGGAATGGTGCCA i cebCap1.NW_016107439v1 C 0 C 0 s otoGar3.GL873602 8596344 35 + 8790067 GCAGGTGTTTT----ATGAGCCATTGAGGAATAGTACCA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47969635 36 + 63241923 GCATGTATTTT---TGTGGGACATTAAGGAATGACACCA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4083518 36 - 5279953 GCATGTGTTTT---TGTGGGACCTTAAGGAATGGCACCA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1858141 115 + 4188776 I e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e mm10.chr5 76402984 636 + 151834684 I e aotNan1.NW_018493494v1 9363194 4 - 11631747 I a score=207277.000000 s hg38.chr4_KI270787v1_alt 41768 19 + 111943 TGCTG--ACAACTATCAATAT s panTro5.chr4 119606803 19 - 194502333 TGCTG--ACAATTATCAATAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121020221 19 - 195804263 TGCTG--ACAATTATCAATAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4451523 19 - 17550833 TGCTG--ACAATTATCAATGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69324502 19 - 118206036 TGCTG--ACAATTATCAATAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111528133 19 - 190429646 TGCTG--ACAATTATCAATAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110696273 19 - 189454096 TGCTG--ACAATTATCAATAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13264334 19 + 26754465 TGCTG--ACAATTATCAATAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165591 19 - 5137665 TGCTG--ACAATTATCAATAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122880447 19 - 135778131 TGCTG--ACAGTTATCAATAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1982278 19 + 2427316 TGCTG--ACAATTGTCAATAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275831 19 + 1448899 TGCTG--ATAATTATCAATAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52997396 18 - 190850796 TACTG--ACAATTATCAATA- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161192 19 - 15139346 TGCTA--TCAATTATCAATAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6945123 19 - 7304997 TGCTA--TCAATTATCAATAT i cebCap1.NW_016107439v1 C 0 C 0 s proCoq1.NW_012140747v1 1858256 19 + 4188776 TGCTG--ATAATTATCAATGT i proCoq1.NW_012140747v1 I 115 C 0 s otoGar3.GL873602 8596379 21 + 8790067 TGCTGACACAGTTATTTACCT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47969671 16 + 63241923 ---AG--TTGATGATCAATGT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4083554 19 - 5279953 AACTG--ATGATTATCAACGT i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e mm10.chr5 76402984 636 + 151834684 I e aotNan1.NW_018493494v1 9363194 4 - 11631747 I a score=12292.000000 s hg38.chr4_KI270787v1_alt 41787 1 + 111943 G s panTro5.chr4 119606822 1 - 194502333 G i panTro5.chr4 C 0 C 0 s panPan2.chr4 121020240 1 - 195804263 G i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4451542 1 - 17550833 G i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69324521 1 - 118206036 G i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111528152 1 - 190429646 G i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110696292 1 - 189454096 G i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13264353 1 + 26754465 G i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165610 1 - 5137665 G i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122880466 1 - 135778131 G i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1982297 1 + 2427316 G i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275850 1 + 1448899 G i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52997414 1 - 190850796 G i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161211 1 - 15139346 G i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6945142 1 - 7304997 G i cebCap1.NW_016107439v1 C 0 C 0 s proCoq1.NW_012140747v1 1858275 1 + 4188776 A i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8596400 1 + 8790067 A i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76403620 1 + 151834684 g i mm10.chr5 I 636 C 0 s canFam3.chr13 47969687 1 + 63241923 G i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4083573 1 - 5279953 A i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1768846 149 + 3286835 I e aotNan1.NW_018493494v1 9363194 4 - 11631747 I a score=251153.000000 s hg38.chr4_KI270787v1_alt 41788 17 + 111943 GATATCAAATACAACTA s panTro5.chr4 119606823 17 - 194502333 GATATCAAATACAACTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121020241 17 - 195804263 GATATCAAATACAACTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4451543 17 - 17550833 GATATCAAATACAACTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69324522 17 - 118206036 GATATCAAATACAACTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111528153 17 - 190429646 GATATCAAATACAACTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110696293 17 - 189454096 GATATCAAATACAACTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13264354 17 + 26754465 GATATCAAATACAACTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165611 17 - 5137665 GATATCAAATACAACTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122880467 17 - 135778131 GATATCAAATACAATTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1982298 17 + 2427316 GATATCAAATACAACTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275851 17 + 1448899 GATATCAAATACAACTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52997415 17 - 190850796 GATATCAAATATAAGTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161212 17 - 15139346 GATATCAAATATAAGTG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6945143 17 - 7304997 GATATCAAATATAAGTG i cebCap1.NW_016107439v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1768995 17 + 3286835 GATAGCAAATACAACTG i micMur3.chrUn_NW_017968520v1 I 149 C 0 s proCoq1.NW_012140747v1 1858276 17 + 4188776 GATAGCAAATACAACTG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8596401 17 + 8790067 GATAGCAAATACAACTG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76403621 17 + 151834684 gATGGCAAATCTAGATC i mm10.chr5 C 0 C 0 s canFam3.chr13 47969688 17 + 63241923 GACATCAAATATAACTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4083574 17 - 5279953 GATACCAAACAAGGCTG i dasNov3.JH568349 C 0 C 0 e aotNan1.NW_018493494v1 9363194 4 - 11631747 I a score=4865371.000000 s hg38.chr4_KI270787v1_alt 41805 347 + 111943 TCTGTCTGTAGTTATTAAACATTTCCTTCTGTCAATTTGTTAC-TAAGGACATGCCAAT-ATGGAAGAAGCCCAGAGGTCCAGGGACAGGGCCTCAAGACGGAAGAAGTATGATACC---CTACAAGAAGCAAGCCAGGCCATTTGTGCCATAGATATGTGAAATAATGAA-----------TTATGT------T--------AAAA-AATCAAATCTTATTTGGAAATAATGTATATTGTT---AAGTATTTACAGATAATGATTAACTTTGCCAATGGAGGTTA-AAAGCTCTCTtcct----tacagtacagggtctt-actcatgtttatgt-----------------------------------------------------ccccaatcccaggaaagagtagctgcttaataaatgattg-------------tggatataaat s panTro5.chr4 119606840 347 - 194502333 TCTGTCTGTAGTTATTAAACATTTCCTTCTGTCAATTTGTTAC-TAAGGACATGCCAAT-ATGGAAGAAGCCCAGAGGTCCAGGAACAGGGCCTCAAGACGGAAGAAGTATGATACC---CTACAAGAAGCAAGCCAGGCCATTTGTGCCATAGATATGTGAAATAATGAA-----------TTATGT------T--------AAAA-AATCAAATCTTATTTGGAAATAATGTATATTGTT---AAGTATTTACAGATAAGGATTAACTTTGCCAATGAAGGTTA-AAAGCTCTCTtcct----tacagtacagggtctt-actcatgtttatgt-----------------------------------------------------ccccaatcccaggaaagagtagctgcttaataaatgattg-------------tggatataaat i panTro5.chr4 C 0 C 0 s panPan2.chr4 121020258 347 - 195804263 TCTGTCTGTAGTTATTAAACATTTCCTTCTGTCAATTTGTTAC-TAAGGACATGCCAAT-ATGGAAGAAGCCCAGAGGTCCAGGGACAGGGCCTCAAGACGGAAGAAGTATGATACC---CTACAAGAAGCAAGCCAGGCCATTTGTGCCATAGATATGTGAAATAATGAA-----------TTATGT------T--------AAAA-AATCAAATCTTATTTGGAAATAATGTATATTGTT---AAGTATTTACAGATAATGATTAACTTTGCCAATGAAGGTTA-AAAGCTCTCTtcct----tacagtacagggtctt-actcatgtttatgt-----------------------------------------------------ccccaatcccaggaaagagtagctgcttaataaatgattg-------------tggatataaat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4451560 352 - 17550833 TCTGTCTGTAGTTATTAAACATTTCCTTCTGTCAATTTGTTAC-TAAGGACATGCCAAT-ATGGAAGAAGCCCAGAGGTCCAGGGACAGGGCCTCAAGACAGAAGAAGTATGATACC---CTACAAGAAGCAAGCCAGACCATTTGTGCCATAGATATGTGAAATAATGAA-----------TTATGT------T-------AAAAA-AATCAAATCTTATTTGGAAATAATGTATATTGTT---AAGTATTTACAGATAATGATTAACTTTGCCAATGGAGGTTA-AAAGCTCTCTtccttacatacagtacagggtctt-actcatgtttatgt-----------------------------------------------------ccccaatcccaggaaagagtagctgcttaataaatgattg-------------tggatataaat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69324539 348 - 118206036 TCTGTCTGTAGTTATTCAACATTTCCTTCTGTCAATTTGTTAT-TAAGGACATGCCAAT-ATGGAGGAAGCCCAGAGGTCCAGGGACAGGGCCTCAAGACAGAAGAAGTATGATACC---CTACAAGAAGCAAGCCAGGCCATTTGTGCCATAGATACGTGAAATAATGAA-----------TTAAGT------T-------AAAAA-AATCAAATCTTATTTGGAAATAATGTATATTGTT---AAGTATTTATAGATAATGATTAACTTTGCCAATGGAAGTTA-AAAGCTCTCTTCCT----TACAGTacgggatctt-actcatgtttatgt-----------------------------------------------------ccccaatcccagcaaagagtagctgcttaataaatggttg-------------tggatataaat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111528170 359 - 190429646 TCTGTCTGTAGTTATTAAACATTTCCTTCTGTCAATTTGTTAC-TAAGGACATGCCAAT-ATGGAAGAAGCCCACAGGTCCAGGGACAGGGCCTCAAGACAGAAGAAGTAAGCCTTCTTACTACAAGAAGCAAGCCAGGCCATTTGTGCCATAGATATGTCAAATAATGAG-----------TTATGT-----AA---AAAAAAAAA-AATCAAATCTTATTTGGAAATAATGTATATTGTTAAGAAGTATTTACAGATAATGATTAACTTTGCCAATGGAGATTA-AAAGCTCTCTTCCT----TACAggatggggtctt-actcatgtttatgc-----------------------------------------------------ccccaatcccagcaaagagtagctgcttaatacatgattg-------------tggatataaat i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110696310 358 - 189454096 TCTGTCTGTAGTTATTAAACATTTCCTTCTGTCAATTTGTTAC-TAAGGACATGCCAAT-ATGGAAGAAGCCCACAGGTCCAGGGACAGGGCCTCAAGACAGAAGAAGTAAGCCTTCTTACTACAAGAAGCAAGCCAGGCCATTTGTGCCATAGATATGTCAAATAATGAG-----------TTATGT------A---AAAAAAAAA-AATCAAATCTTATTTGGAAATAATGTATATTGTTAAGAAGTATTTACAGATAATGATTAACTTTGCCAATGGAGATTA-AAAGCTCTCTTCCT----TACAggatggggtctt-actcatgtttgtgc-----------------------------------------------------ccccaatcccagcaaagagtagctgcttaatacatgattg-------------tggatataaat i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13264371 357 + 26754465 TCTGTCTGTAGTTATTAAACATTTCCTTCTGTCAATTTGTTAC-TAAGGACATGCCAAT-ATGGAAGAAGCCCACAGGTCCAGGGACAGGGCCTCAAGACAGAAGAAGTAAGCCTTCTTACTACAAGAAGCAAGCCAGGCCATTTGTGCCATAGATATGTCAAATAATGAG-----------TTATGT----------AAAAAAAAA-AATCAAATCTTATTTGGAAATAATGTATATTGTTAAGAAGTATTTACAGATAATGATTAACTTTGCCAATGGAGATTA-AAAGCTCTCTTCCT----TACAggatggagtctt-actcatgtttatgc-----------------------------------------------------ccccaatcccagcaaagagtagctgcttaatacatgattg-------------tggatataaat i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165628 358 - 5137665 TCTGTCTGTAGTTATTAAACATTTCCTTCTGTCAATTTGTTAC-TAAGGACATGCCAAT-ATGGAAGAAGCCCACAGGTCCAGGGACAGGGCCTCAAGACAGAAGAAGTAAGCCTTCTTACTACAAGAAGCAAGCCAGGCCATTTGTGCCATAGATATGTCAAATAATGAG-----------TTATGT------A---AAAAAAAAA-AATCAAATCTTATTTGGAAATAATGTATATTGTTAAGAAGTATTTACAGATAATGATTAACTTTGCCAATGGAGATTA-AAAGCTCTCTTCCT----TACAggatggggtctt-actcatgtttatgc-----------------------------------------------------ccccaatcccagcaaagagtagctgcttaatacatgattg-------------tggatataaat i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122880484 358 - 135778131 TCTGTCTGTAGTTATTAAACATTTCCTTCTGTCAATTTGTTAC-TAAGGACATGCCAAT-ATGGAAGAAGCCCACAGGTCCAGGGACAGGGCCTCAAGACAGAAGAAGTAAGCCTTCTTACTACAAGAAGCAAGCCAGGCCATTTGTGCCATAGATATGTAAAATAATGAG-----------TTATGT------A---AAAAAAAAA-AATCAAATCTTATTTGAAAATAATGTATATTGTTAAGAAGTATTTACAGATAATGATTAACTTTGCCAATGGAGATTA-AAAGCTCTCTTCCT----TACAggatggggtgtt-actcgtgtttatgt-----------------------------------------------------ccccaatcccagcaaagagtagctgcttaataaatgattg-------------tggatataaat i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1982315 356 + 2427316 TCTGTCTGTAGTTATTAAACATTTCCTTCTGTCAATTTGTTAC-TAAGGACATGCCAAT-ATGGAAGAAGCCCACAGGTCCAGGGACAGGGCCTCAAGACAGAAGAAGTAAGCCTTCTTACTACAAGAAGCAAGCCAGGCCATTTGTGCCACAGATATGTCAAATAATGAG-----------TTATGT-----------AAAAAAAA-AATCAAATCTTATTTGGAAATAATGTATATTGTTAAGAAGTATTTACAGATAATGATTAACTTTGCCAATGGAGATTA-AAAGCTCTCTTCCT----TACAggatggggtctt-actcatgtttatgc-----------------------------------------------------ccccaatcccagcaaagagtagctgcttaataaatgattg-------------tggatataaat i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1275868 364 + 1448899 TCTGTCTGTAGTTATTAAACATTTCCTTCTGTCAATTTGTTAC-TAAGGACATGCCAAT-ATGGAAGAAACCCAGAGGTCCAGGGACAGGGCCTCAAGACAGAAGAAGTAAGCCTTCTTACTACAAGAAGCAAGCCAGGCCATTTGTGCCATAGATATGTAAAATAATGAG-----------TTATGCaaaaaaa---aaaaaaaaa-aaTCAAATCTTATTTGGAAATAATGTATATTGTTAGGAAGTATTTACAGATAATGATTAACTTTGCCAATGGAGATTA-AAAGCTCTCTTCCT----TACAggatggggtctt-actcatgtttatgc-----------------------------------------------------ccccaatcccagcaaagagtagctgcttaataaatgattg-------------tggatataaat i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52997432 346 - 190850796 TTTGTTTGTACTTATTAAACATTTCCTTTTGACAATTTGTTAC-TAAGGACATGTCAAT-ATGGAAGAAGCCCAGAGGTCCAGGGACAGGGCCTTAAGACAGAAAAAGTATGATACC---CTACAAGAAGCAAGCCAGGCCATTTGTGCCATAGATGTGTGTGATAATGAA-----------TTATGT------T------AAAAAA-AATCAAGTCTTATTTGGAAATAATGTATATTGTTAAGAAGTGTTTACAGATAATAATGAACCTTGCCAATAGAGATTA-AAAGCTCTCTTCCT----CACAGGACTGGGTCTT-ACTCGTGTTTATG------------------------------------------------------CCCCAATCCCAGCAAAGATTAGCTGC-----AAATGATTG-------------TGAATATAAAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161229 346 - 15139346 TCTGTCTGTACTTATTAAACATTTCCTTTTGACAATTTGTTACTTAAGGACTTGTCAAT-ATGGAAGAAGCCCAGAGGTCCTGGGACAGGGCCTTAAGACAGAAAAAGTATGATATC---CTACAAGAAGCAAGCCAGGCCATTTGTGCCATAGATGTGTGTGATAATGGA-----------TTACAT------T-------TAAAA-AATCAAATCTTATTTGGAAATAATGTATATTGTTAAGAAGTATATACAGAAAATGATTAACTTTGCCAATGGAGATTA-AAAGTTCTCTTCCT----TACAGGACTGGGTCTT-ACTCACGTTTATG------------------------------------------------------CCCCAATCCTAGCAAAGATTAGCTGC-----AAATGACTG-------------TGAATATAAAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6945160 351 - 7304997 TCTGTCTGTACTTATTAAACATTTCCTTTTGACAATTTGTTACTTAAGGACATGTCAAT-ATGGAAGAAGCCCAGAGGTCCTGGGACAGGGCCTTAAGACAGAAAAAGTATGATACC---CTACAAGAAGCAAGCCAGGCCATTTGTGCCATAGATGTGTGTGATAATGAA-----------TTACGT------T--AAAAAAAAAA-AAACAAATCTTATTTGGAAATAATGTATATTGTTAAGAAGTATTTACAGATAATGATTAACTTTACCAATGGAGATTA-AAAGTTCTCTTCCT----TACAGGACTGGGTCTT-ACTCATGTTTATG------------------------------------------------------CACCAATCCCAGCAAAGATTAGCTGC-----ACATGATTG-------------TGAATATAAAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9363198 346 - 11631747 TCTGTCTGTACTTATTAAACATTTCCTTTTGACACTTTGTTACTTAAGGACATGTCAAT-ATGGAAGAAGCCCAGAGGTCCTGGGACAGGGCCTTAAGACAGAAAAAGTATGATACC---CTACAAGAAGCAAGCCAGGCCATTTGTGACATAGATGTGTGTGATAATGAA-----------TTACAT------T-------TAAAA-AATCAAATCTTATTTGGAAATAATGTATATTGTTAAGAAGTATTTACAGATAATGATTAACTTTACCAAAGGAGATTA-AATGTTCTCTTCCT----TACAGGACTGGGTATT-ACTCATATTTATG------------------------------------------------------CCCCAATCCCAGCAAAGATTAGCTGC-----AAATGATTG-------------TGAATATAAAT i aotNan1.NW_018493494v1 I 4 C 0 s micMur3.chrUn_NW_017968520v1 1769012 350 + 3286835 TCTGTCTGTAGTTATTAAACATTTCCTTTTGGTAATTTGTTAT-TAAGGACTTTCCAATAATGGAAGAAGCTGGGAGGTCCAGGGATGGGGACTCAAGACAGAAGAAGTATAATACC---TGCCAAGAAACAAGCCAG---------GCCATAGATGTGTATGATAAAGAA-----------TTACAT------T-TTTTAAAAAAACACACAAATGTTATTTGGAAATAATTTATACTCTTCAGAAGCATTTACAGATAACGATTCACTTTGCCAATGGAAATTA-AAAGCTTTCTtcct----tgcaggactggcttttaactcatgtttgtcc-----------------------------------------------------ctcaaatcccagcaaagagtagctgcttaacaaatga-tg-------------tggatataaat i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1858293 339 + 4188776 TCTGTCTGTAGTTATTAAACATCTCCTTTTGATAATTTGTTAC-TAAGGACATGCCGATAATGGAAGAAGCTGGGATGTCCAGGGATGGGGACTCAAGAC---AGAAGTATGATACC---TGCCAAGAAACAGGCCAGGCCATTTGTGCCATAGATATGTATGATAAGGAA-----------TTATAT------T-TTTTTAAAAAA-ACACAAATGTTATTTGGAAATAATTTATACTCTTCAGAAGTATTTACAGGTAACGATTCACTTTGCTAATGGAGATTA---------------------CAggactggctctt-actcatgtttgtcc-----------------------------------------------------ctcaaatcccagcaaagagtagctgcctaagaaatgactg-------------tggatataaat i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8596418 336 + 8790067 TCTGTCAATAGTTCCTACACACCTCCTTTTGGTAGTTTGTTAC-TGAGGA--------------GAGAAGT--ATAAGTCCAGGGACAGGGACCCAAGACAGAAAATGCAGGATACC---TGGCAAG-AACAGGCCAGGCCCTTCGTGCCATTGGTATGTGTGACAATAAC-----------TTACAT------T-TC---AAAAAA-CCACTATTGCTATCTGGAAATAAGTTAAACTCTTCAGAAATATTTAAAGATCACACTTCACTTTGCTAATGGGACTCA-AAAGCCTCTTTCTT----A-CAggactgggtctt-actcacgtttgt-t-----------------------------------------------------ctcaaatcccagcaaagagtagccgcttagcaaatgACTA-------------CGGACAGAAAT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76403638 411 + 151834684 TCTGTCCACAGTTACTAAGCATTTGC-CCTGGTAAGTTTTTAT-TAAAAGCATTTAAAT-ATGGCATCGGCCTAGAGGCCTAGGGGTGGACCCTCAGCACAGGAAATGTAAAGTTC----TTTCAAGAATCATGCCAGGCTACT----CCATATGCCTGTGGGATAACTAATACACACGTGGTTGCAT------T----TCTAAAAC-ACACATGTGTTATCTGGAAACAATTTGCCCT-TCACAGAGACTCTATAATTAAGGAGTCACTTTGCCAATGGAAATTA-AAAATTATATTCCT----TACTGAACTAGGTCTT-ACttgtgtttttctgtttttttttcctttgttcatttttgtttttgttttgttttgttttgttttTGGCCCAGATCCAGCAACAAAAAGCTGCCTAACAAGGGATTG-------------TAGCTATACAT i mm10.chr5 C 0 C 0 s canFam3.chr13 47969705 369 + 63241923 TCTGTATGTAGTTGTTATACGTTTCTTTTTGTTAATTTATTAC-TAATAATTTGCAAAT-ATGGAAGGAACCCAAAGTTTCAGGACTGGGACCTCAAGACAGAAGAAGTTTAATGCT---CTGCAAGATACAGGCCAGGCCATTTGTGCCACAGATGTGTATGATAATGAA-----------TTACAT------TTTTCCTAAAAAC-CTACAAATGTTATTTGCAA--TATTTATACTCTTCAGAAGCATTTACAAATGATGATTCAGTTTGTCAGTGAAGAGTAAAAAGCTCTCTTCTT----TACAAAattatgtctt-actcatacttatt------------------------------------------------------ccccaattccagcaaagagtagtttcttaagaaatgattgGatttatactttataagtataaat i canFam3.chr13 C 0 I 110 s dasNov3.JH568349 4083591 307 - 5279953 --TGTTTG---TTACTAAACGTTTCTTTTTGGTAGTTTGTGAC-TATGGACTTGCAGAT-GTGGAAGCATCTCAGAAGCTCAGGGATGGGGCCTCAAAAC---AGAAGTATGACATT---CTGCAAGA------------------------------GTATGATAATGAA----------ATTACAT------T---TTTTCAAAA-------ATGCTGTTTTCAAATAATTTATACTTCTTATCAATATTTAAAAATAGTAATTCACTTTGCCAATAAAGATAA-AAAACTCTTTTCCT----AAC----TTGGgtctt-attcatgactgtg------------------------------------------------------tcccagtcccagcaaagagtatctgcttaataaatgacta-------------tggatataaat i dasNov3.JH568349 C 0 C 0 a score=3095473.000000 s hg38.chr4_KI270787v1_alt 42152 204 + 111943 taaGTTTAATCAAGAACATTATTAAG-ATAATCAAGGAAGATCTTACAAAGTTTTGCCATTTATCTTGTCTAGTTTGTTCAGCTACCTTATATTACAAGGAAGGAGTGACTTTTGCATCCTACAAACTTCCTGG-----AAGAGT-AATTATCAGTTAGACATCTAGGGACCATCCAAGACTT----AAATGAACACAGGAACTTTGAGTGCTCC s panTro5.chr4 119607187 204 - 194502333 taaGTTTAATCAAGAACATTATTAAG-ATAATCAAGGAAGATCTTACAAAGTTTTGCCATTTATCTTGTCTAGTTTGTTCAGCTACCTTATATTACAAGGCAGGAGTGACTTTTGCATCCTACAAACTTCCTGG-----AAGAGT-AATTATCAGTTAGACATCTAGGGACCATCCAAGACTT----AAATGAACACAGGAACTTTGAGTGCTCC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121020605 204 - 195804263 taaGTTTAATCAAGAACATTATTAAG-ATAATCAAGGAAGATCTTACAAAGTTTTGCCATTTATCTTGTCTAGTTTGTTCAGCTATCTTATATTACAAGGCAGGAGAGACTTTTGCATCCTACAAACTTCCTGG-----AAGAGT-AATTATCAGTTAGACATCTAGGGACCATCCAAGACTT----AAATGAACACAGGAACTTTGAGTGCTCC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4451912 204 - 17550833 taaGTTTAATCAAGAACATTATCGAG-ATAATCAAGGAAGATCTTACAAAGTTTTGCCATTTATCTTGTCTAGTTTGTTCAGCTACCTTATATTACAAGGAAGGAGTGACTTTTGCATCCTACAAACTTCCTGG-----AAGAGT-AATTATCAGTTAGACATCTAGGGACCATCCAAGACTT----AAATGAACACAGGAATTTTGAGTGCTCC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69324887 202 - 118206036 taaGTTTAATCAAGAACATTACTAAG-ATAATCAAGGAAGATCCTACAAAGATTTGCCATTTATCTTGTCTAGTTTGTTCAACTACCTTATATTACAGGGAAGGAGTGAC--TTGCATCCTACAAACTTCCTGG-----AAGAGT-AATTATCAGTTAGACATCTAGGGACCATCCAAGACTT----AAATGAACACAAGAATTTTGAGTGCTCC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111528529 209 - 190429646 taaGTTTAATCAAGAATATTATTAAGTATAATCAAGGAAGATCCTACAAAGTTTTGCCATTTGTCTTGTCTAGTTTGCTCAACTACCTTATATTACAGGGAAGCAGTGACTTTTGCATCCTATAATCTTCCTGG-----AAGAGT-AATTATCAGTTAGACATCTAGGAACCATCCAAGACTTAAAGAAATGAACACAGGAATTTTGAGTGCCCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110696668 209 - 189454096 taaGTTTAATCAAGAATATTATTAAGTATAATCAAGGAAGATCCTACAAAGTTTTGCCATTTGTCTTGTCTAGTTTGTTCAACTACCTTATATTACAGGGAAGCAGTGACTTTTGCATCCTATAATCTTCCTGG-----AAGAGT-AATTATCAGTTAGACATCTAGGAACCATCCAAGACTTAAAGAAATGAACACAGGAATTTTGAGTGCCCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13264728 209 + 26754465 taaGTTTAATCAAGAATATTATTAAGTATAATCAAGGAAGATCCTACAAAGTTTTGCCATTTGTCTTGTCTAGTTTGTTCAACTACCTTATATTACAGGGAAGCAGTGACTTTTGCATCCTATAATCTTCCTGG-----AAGAGT-AATTATCAGTTAGACATCTAGGAACCATCCAAGACTTAAAGAAATGAACACAGGAATTTTGAGTGCCCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4165986 209 - 5137665 taaGTTTAATCAAGAATATTATTAAGTATAATCAAGGAAGATCCTACAAAGTTTTGCCATTTGTCTTGTCTAGTTTGTTCAACTACCTTATATTACAGGGAAGCAGTGACTTCTGCATCTTATAATCTTCCTGG-----AAGAGT-AATTATCAGTTAGACATCTAGGAACCATCCAAGACCTAAAGAAATGAACACAGGCATTTTGAGTGCCCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122880842 209 - 135778131 taaGTTTAATCAAGAATATTATTAAGTATAATCAAGGAAGATCCTACAAAGTTTTGCCATTTGTCTTGTCTAGTTTGTTCAACTACCTTATATTACAGGGAAGCAGTGACTTCTGCATCCTATAAACTTCCTGG-----AAGAGT-AGTTACCAGTTAGACATCTAGGAACCATCCAAGACTTAAAGAAATGAACACAGGAATTTTGAGTGCCCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1982671 209 + 2427316 taaGTTTAATCAAGAATATTATTAAGTATAATCAAGGAAGATCCTACAAAGTTTTGCCATTTGTCTTGTCTAGTTTGTTCAACTACCTTATATTACAGGGAAGCAGTGACTTCTGCATCCTATAATCTTCCTGG-----AAGAGT-AATTATCAGTTAGACATCTAGGAACCATCCAAGACTTAAAGAAATGAACACAGGCATTTTGAGTGCCCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1276232 209 + 1448899 TTAGTTTAATCAAGAATATTATTAAGTATAGTCAAGGAAGATCCTGCAAAGTTTTGCCATTTGTCTTGTCTAGTTTGTTCAACTACCTTATATTATAGGGAAGCAGTGACTTTTGCATCCTACAAACTTCCTGG-----AAGAGT-AATTATCAGTTAGACATCTAGGAACCATCCAAGACTTAAAGAAATGAACACAGGAATTTTGAGTGCCCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52997778 208 - 190850796 TAAGTTTAATCAACAACATTATGAAGTATAATCAAGGAAGATCCTAAGAAGTTTTGCCATTTATCTTGTCTAGTTTGTTCAACTACCTTATATTACAGGGAGGGAGTGGCTTTTGTATCCTACAAACTTCCTGG-----AAGAGT-AATTATCAGTTAGACATCTAGGAACCATCCAAGACTTAAATAAATG-ACACAGGAATTTTGAGTGCTCC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161575 209 - 15139346 TAAGTTTAATCAAGAACATTATGAAGTATAATCAAGGAAGATCCTACGAAGTTTTGCCATTTATCTTGTCTCGTTTGTTCAACTACCTTATATTACAGGGAAGGAATGGCTTTTGTATCCTACAAACTTCCTAG-----AAGAGT-AATTATCAGTTAGACATCCAGGAACCATCCAATACTTAAATAAATGAACACAGGAATTTTGAGTGCTCC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6945511 207 - 7304997 TAAGTTTAATCAAGAACATTATGAAGTATAATCAAGGAAGATCCTACGAAGTTTTGCCATTTATCTTGTCTAGTTTGTTCAACTACCTTATATTACAGGGAAGGAGTGGCTTTTGTAAC--ACAAACTTCCTGG-----AAGAGT-AATTATCAGTTAGACATCTAGGAACCATCCAAGACTTAAATAAATGAACACAGGAATTTTGAGTGTTCC i cebCap1.NW_016107439v1 C 0 I 17 s aotNan1.NW_018493494v1 9363544 208 - 11631747 TAAGTTTAATCAAGAACATTA-GAAGTAGAATCAAGGAAGATCCTATGAAGTTTTGCCATTTATCTTGTCTAGCTTGTTCAACTACCTTATCTTACAGGGAAGGAGTGGCTTTTGTATCCTACAAACTTCCTGG-----AAGAGT-AATTATCAGTTAGACATCTAGGAACCATCCAAGACTTAAATAAATGAACACAGGAATTTTGAGTGCTCC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1769362 209 + 3286835 taaGGACAATCAAGAGCATTATTCAGTACAGTCAAGGAAGATTCTACAAAGTCTTGCGGTTTACCTTGTCTAGCTTGCTAGATTACCTTATATCACAGGGAAAGAGGAGTTTTCTCATCCTAAGAACTTCCTGA-----AAGAGC-AATTCTCAGTTTGACATCCAGGTACCCTCTAAGACTTAAAGAGATGAACACAGGGATTGTGAGTGCTCC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1858632 209 + 4188776 taaGGACAATCAAGAGCATTGTTAAGTATAATCAAGGAAGACCCTACAAAGTCTTGCTATTGACGTTGTCTAGCTTGCTAGATTACCTTATATCACAGGGAGAGAGAAGCTTTCTCATCCTAAGAACTTCCTGA-----AAGAGT-AATTATCAGTTTAACATCCAGGTACCCTCTAAGACTTAAAGAAATGAACACAGGGATTGTGAGTGCTCA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8596754 208 + 8790067 TAAGTATAATCAAGAGCATTACTGAGTGTCATCAAGGAAGATTCTACAGTGTCTTCCCATTTATCTTTTCTAGCTTGCAATATTACTTTACATCACAAGAAAAGAGGAGCTTTCTCATCCTAAAAACCTCCTGA-----AA-AGT-AATTATCAATTTGACATACAGGTACCATCTAAGACTTAAAGAAATGATCACAGGAATTGTGGATGCTCC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76404049 171 + 151834684 GAAAT----------------------ATAATCAAGAAAGAGCATTGACAGTCTTGTTGTTTGTCTTCTCTGGGTCTTCT--CTAGATTATCTCACAGGGAAGGGGTGGCTTTCTCATCCTGTAATCTTCCTGACTCCTAAGACT-GTTTATGACT-----------GAAC------AGAACCACAGGCATGGATACAGGAATTGAGAATTCT-- i mm10.chr5 C 0 C 0 s canFam3.chr13 47970184 206 + 63241923 tatatttaataaaGAGTGTTATTAAATATAATCAAGAAAGATCCTACAAGGTCTTGCTATTTATCTTATCTAGCTTGCTAGACTACCCTATATCACA----AAGAGTGGATCTCTCATCTTAAAAATTTTCTGA-----AAGAGTAAATTATCAGTTTAACATCTAAGTACAATCTAAAAATTTAAAAAGTTAACACAGGAATTCTAGGTACTTC i canFam3.chr13 I 110 C 0 s dasNov3.JH568349 4083898 198 - 5279953 taaGTATAACCAAGAATATGATTAAGTGTAATCAAGAAGGATCCTACTAAGTCTTGCCACTTATCTTGTCTAGCTTACCAGGCTACCCTATATCACAGGGAAAGAGTAGGTTTCTCATCCTAAAAACTCCCAGG-----AAGAAT-AATTAAGAATTTGACATTTC-----------AGACCTAAAGAAACAAACACAGGAATTTGGCGTGCTCC i dasNov3.JH568349 C 0 C 0 a score=139641.000000 s hg38.chr4_KI270787v1_alt 42356 8 + 111943 CTTGGTGA s panTro5.chr4 119607391 8 - 194502333 CTTGGTGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121020809 8 - 195804263 CTTGGTGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4452116 8 - 17550833 CTTGGTGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69325089 8 - 118206036 CTTGGTGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111528738 8 - 190429646 CTTGGTGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110696877 8 - 189454096 CTTGGTGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13264937 8 + 26754465 CTTGGTGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4166195 8 - 5137665 CTTGGTGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122881051 8 - 135778131 CTTGGTGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1982880 8 + 2427316 CTTGGTGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1276441 8 + 1448899 CTTGGTGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52997986 8 - 190850796 CTTGGTGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161784 8 - 15139346 CTTGGTGA i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9363752 8 - 11631747 CTTGGAGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1769571 8 + 3286835 CTTGGTGA i micMur3.chrUn_NW_017968520v1 C 0 I 90 s proCoq1.NW_012140747v1 1858841 8 + 4188776 CTTGGTGA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8596962 8 + 8790067 CTTGGAAA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76404220 8 + 151834684 CTTGGTAA i mm10.chr5 C 0 C 0 s canFam3.chr13 47970390 8 + 63241923 CTTGGTGA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4084096 8 - 5279953 TCTGATGA i dasNov3.JH568349 C 0 C 0 e cebCap1.NW_016107439v1 6945718 17 - 7304997 I a score=47047.000000 s hg38.chr4_KI270787v1_alt 42364 11 + 111943 TCATTTTTATC s panTro5.chr4 119607399 11 - 194502333 TCATTTTTATC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121020817 11 - 195804263 TCATTTTTATC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4452124 11 - 17550833 TCATTGAGATA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69325097 11 - 118206036 TCATCGAGATA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111528746 11 - 190429646 GCATCAAGATA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110696885 11 - 189454096 GCATCAAGATA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13264945 11 + 26754465 GCATCAAGATA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4166203 11 - 5137665 GCATCAAGATA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122881059 11 - 135778131 GCATCAAGATA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1982888 11 + 2427316 GCATCAAGATA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1276449 11 + 1448899 GCATCAAGATA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52997994 11 - 190850796 GCATCAGAATA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161792 11 - 15139346 GCATCAAAATA i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9363760 11 - 11631747 GCATCAAAATA i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1858849 5 + 4188776 GTGTC------ i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8596970 5 + 8790067 GTGTC------ i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76404228 9 + 151834684 --GACAAGACC i mm10.chr5 C 0 C 0 s canFam3.chr13 47970398 11 + 63241923 GTGTCAAGACA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4084104 11 - 5279953 GTGGCAAGATG i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1769579 90 + 3286835 I e cebCap1.NW_016107439v1 6945718 17 - 7304997 I a score=1490352.000000 s hg38.chr4_KI270787v1_alt 42375 109 + 111943 AAAAGGATCTTTCTATCTCATTACTCTGTACTCCTTT-GAGCAACAATCCTCAATATTTTAGATAGTAAAGAACCTAAGAGCCAGATGTTCAATGAGACACCAAATTTAT s panTro5.chr4 119607410 109 - 194502333 AAAAGGATCTTTCTATCTCATTACTCTGTACTCCTTT-GAGCAACAATCCTCAATATTTTAGATAATAAAGAACCTAAGAGCCAGATGTTCAATGAGACACCAAATTTAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121020828 109 - 195804263 AAAAGGATCTTTCTATCTCATTACTCTGTACTCCTTT-GAGCAACAATCCTCAATATTTTAGATAATAAAGAACCTAAGAGCCAGATGTTCAATGAGACACCAAATTTAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4452135 109 - 17550833 AAAAGGATCTTTCTATCTCATTACTCTGTACTCCTTT-GAGCAACAATCCTCAATATTTTAGATAGTAAAGAACCTAAGAGCCAGATGTTCAATGAGACATCAAATTTAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69325108 109 - 118206036 AAAAGGATCTTTCTATCTCATTACTCTGTACTCCTTT-GAGCAACAGTCCTCAATATTTTAGATAGTAAAGAACCTAAGATCCAGATGTTCAATGAGACATCAAATTTAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111528757 109 - 190429646 AAAAGAATCTTTCTATCTCATTACTCTGTACTCCTTT-GAGCAACAGTCCTCAATATTTTAGATAGTGAAGAACCTAAGATCCAGATGTTCAATGAGACGTCAAATTTAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110696896 109 - 189454096 AAAAGAATCTTTCTATCTCATTACTCTGTACTCCTTT-GAGCAACAGTCCTCAATATTTTAGATAGTGAAGAACCTAAGATCCAGATGTTCAATGAGACGTCAAATTTAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13264956 109 + 26754465 AAAAGAATCTTTCTATCTCATTACTCTGTACTCCTTT-GAGCAACAGTCCTCAATATTTTAGATAGTGAAGAACCTAAGATCCAGATGTTCAATGAGACGTCAAATTTAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4166214 109 - 5137665 AAAAGAATCTTTCTGTCTCATTACTCTGTACTCCTTT-GAGCAACAGTCCTCAATATTTTAGATAGTGAAGAACCTAAGATCCAGATGTTCAATGAGACGTCAAATTTAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122881070 109 - 135778131 AAAAGGATCTTTATATCTCATTACTCTGTACTCCTTT-GAGCAACAGTCCTCAATATTTTAGATAGTGAAGAACCTAAGATCCAGATGTTCAAGGAGACGTCAAATTTAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1982899 109 + 2427316 AAAAGAATCTTTCTATCTCATTACTCTGTACTCCTTT-GAGCAACAGTACTCAATATTTTAGATAGTGAAGAACCTAAGATCCAGATGTTCAATGAGACGTCAAATTTAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1276460 109 + 1448899 AAAAGGATCTTTCTATCTCATTACTCTGTACTCCTTT-GAGCAACAGTCCTCAATATTTTAGATAGTGAAGAACCTAAGACCCAGATGTTCAATGAGACATCAAATTTAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52998005 109 - 190850796 AAAAGGATCTTTCTACCTCATTACTCTGTACTCCTTT-GAGCAACAATACTCAATATTTTAGATAGTAAAGAACCTAAGATCTAGATGTTCAATGAGACATCAAATTTAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161803 109 - 15139346 AAAAGGATCTTTCTATCTCATTACTCTGTACTCCTTT-GAGTAACAATCCTCAATATTTTAGATAGTAAAGAACCTAAGATCTAGATGTTCAATGAGACATCAAATTTAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6945735 109 - 7304997 AAAAGGATGTTTCTATCTCATTACTCTGTACTCCTTT-GAGCAACAATCCTCAATATTTTAGATAGTAACGAACCTAAGATCTAGATGTTCAATGAGACATCAAATTTAT i cebCap1.NW_016107439v1 I 17 C 0 s aotNan1.NW_018493494v1 9363771 109 - 11631747 AAAAGGATCTTTCTATCTCATTACTCTGTACTCCTTT-GAGCAACAATCCTCAATATTTTAGATAGTAAAGAACCTAAGATCTAGATGTTCAATGAGACATCAAATTTAT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1858854 104 + 4188776 AAGAGG----CTCTTTCTCATTTCTCTGTAC-CCCTT-GAACAATGATCTTCACTATTTTAGAGAGAAAAGAATCTAAGATCCGTATGTTCAATGTGACATCATATTTAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8596975 107 + 8790067 AAGAGGG-ATTTTTCTCTCATTACTCTGTAT-CCCTT-GAACAATGGTCCTCAATATTTTAGAAAGAAAAGAATCTAAGATTCCTATGTTCAATGAGACACCAAATTTAA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76404237 81 + 151834684 AAAGGTA---------CTCACTACTCAGCCCCCCCTT-GAAGAATGATCCTCAATATTTTCAAGACTAATGAAGC----ATCCA---GTCCAGTGTGG------------ i mm10.chr5 C 0 C 0 s canFam3.chr13 47970409 91 + 63241923 ACAAAGATCTGT-----------CTTTATACCCCCTTGGAACAAAGATTCTTGATATTTTAGAGGGAAAAGAATC--------AGACTTTCAATGAGACATCAAATTTAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4084115 102 - 5279953 AAAGGAATCTTCTTATATCTTTATTCTGCAACCCCCT-TAGCAAAAATCTTCAGTATCTTAGAGAGTAAAGAACCAGACAATGA-------AGTGAGACATCAAATTTAA i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1769579 90 + 3286835 I a score=373776.000000 s hg38.chr4_KI270787v1_alt 42484 21 + 111943 TCCATTTATCTTACCTGGAGC s panTro5.chr4 119607519 21 - 194502333 TCCATTTATCTTACCTGGAGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121020937 21 - 195804263 TCCATTTATCTTACCTGGAGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4452244 21 - 17550833 TCCATTTATCTTACCTGGAGC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69325217 21 - 118206036 TCCATTTATCTTACCTGGAGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111528866 21 - 190429646 TCCATTTATCTTACCTGGAGC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110697005 21 - 189454096 TCCATTTATCTTACCTGGAGC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13265065 21 + 26754465 TCCATTTATCTTACCTGGAGC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4166323 21 - 5137665 TCCATTTATCTTACCTGGAGC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122881179 21 - 135778131 TCCATTTATCTTACCTGGAGC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1983008 21 + 2427316 TCCATTTATCTTACCTGGAGC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1276569 21 + 1448899 TCCATTTATCTTACCTGGAGC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52998114 21 - 190850796 TCCATTTATTTTACCTGGGGC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161912 21 - 15139346 TCCATTTATTTTACCTGGGGC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6945844 21 - 7304997 TCCATTTATTTTACCTGGGGC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9363880 21 - 11631747 TCCATTTATTTTACCTGGGGC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1769669 21 + 3286835 TCCATTTATCTTACCTGGAGC i micMur3.chrUn_NW_017968520v1 I 90 I 529 s proCoq1.NW_012140747v1 1858958 21 + 4188776 TCCATTTATCTTACCTGGAGC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8597082 21 + 8790067 TGCAGTTGTCTTCCCTGGAGC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76404318 15 + 151834684 ---ATCT---TTACCTAGACC i mm10.chr5 C 0 C 0 s canFam3.chr13 47970500 21 + 63241923 ACCATTTATCTTATCTGAAGC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4084217 21 - 5279953 ACCATTTATCTTATCTGGAGT i dasNov3.JH568349 C 0 C 0 a score=467677.000000 s hg38.chr4_KI270787v1_alt 42505 27 + 111943 TGAGGTTTCTTTGTGTTTAGCGTTGTT s panTro5.chr4 119607540 27 - 194502333 TGAGGTTTCTTTGTGTTAAGCGTTGTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121020958 27 - 195804263 TGAGGTTTCTTTGTGTTAAGCGTTGTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4452265 27 - 17550833 TGAGGTTTCTTTGTGTTAAGCGTTGTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69325238 27 - 118206036 TGAGGTTTCTTTGTGTTAAGCATTGTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111528887 27 - 190429646 TGAGGTTTCTTTGTGTTAAGTGTTGTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110697026 27 - 189454096 TGAGGTTTCTTTGTGTTAAGTGTTGTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13265086 27 + 26754465 TGAGGTTTCTTTGTGTTAAGTGTTGTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4166344 27 - 5137665 TGAGGTTTCTTTGTGTTAAGTGTTGTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122881200 27 - 135778131 TGAGGTTTCTTTGTGTTACGTGTTGTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1983029 27 + 2427316 TGAGGTTTCTTTGTGTTAAGTGTTGTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1276590 27 + 1448899 TGAGATTTCTTTGTGTTAAGTGTTGTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52998135 27 - 190850796 TGAGGTTTCTTTGTGCTGAGTGTTGGT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161933 27 - 15139346 TGAGGTTTCTTTGTGTTAAGTGTTGTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6945865 27 - 7304997 TGAGGTTTCTTTGTGTTGAGTGTTGTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9363901 27 - 11631747 TGAGGTTTCTTTGTGCTGAGTGTTGTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1770219 27 + 3286835 TGAGGTTTCTTTTTGTTGAGTGTTGTT i micMur3.chrUn_NW_017968520v1 I 529 C 0 s proCoq1.NW_012140747v1 1858979 27 + 4188776 TGAGGTTTCTTTGTGTTGAGTGTTGTT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8597103 27 + 8790067 TGAGGTTTCTTTGGGCTCAGTGTTGTT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76404333 27 + 151834684 TGTTATTTCTTTGTGAGGAGTGTGGCT i mm10.chr5 C 0 C 0 s canFam3.chr13 47970521 27 + 63241923 TGACATTTCTTTGTGTTGAGTGTTATT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4084238 24 - 5279953 TGAGTTTCCTTTGTGTTGAGTGTT--- i dasNov3.JH568349 C 0 C 0 a score=1441733.000000 s hg38.chr4_KI270787v1_alt 42532 102 + 111943 TTTCTAGAAGCTGAGAATGATGTCTTGGGAGAGACTGTGGATGCTTTCAGAAGAGTA-CATATTTTGTTGTTACAGATTTTTATTTTAAAATTATTCA--TATTA--------- s panTro5.chr4 119607567 102 - 194502333 TTTCTAGAAGCTGAGAATGATGTCTTGGGAGAGACTGTGGATGCTTTCAGAGGAGTA-CATATTTTGTTGTTACAGATTTTTATTTTAAAATTATTCA--TATTA--------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121020985 102 - 195804263 TTTCTAGAAGCTGAGAATGATGTCTTGGGAGAGACTGTGGATGCTTTCAGAGGAGTA-CATATTTTGTTGTTACAGATTTTTATTTTAAAATTATTCA--TATTA--------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4452292 102 - 17550833 TTTCTAGAAGCTGAGAATGATGTCTTGGGAGAGACTGTGGATGCTTTCAGAAGAGTA-CATATTTTGTTGTTACAGATTTTTATTTTAAAATTATTCA--TATTA--------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69325265 101 - 118206036 TTTCTAGAAGCTGAGAATGATGTCTTGGGAGAAACTGTGAATGCTTTCAGAAGAGTA-CATATTTTGTTGTTACAGA-TTTTATTTTAAAATTATTCA--TATTA--------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111528914 101 - 190429646 TTTATAGAAGCTGAGAATGATGTCTTGGGAGAAACTGTGGATGCTTTCAGAAGAGTA-CATATTTTGTTGTTACAGA-TTTTATTTTAAAATTATTCA--TATTA--------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110697053 101 - 189454096 TTTATAGAAGCTGAGAATGATGTCTTGGGAGAAACTGTGGATGCTTTCAGAAGAGTA-CATATTTTGTTGTTACAGA-TTTTATTTTAAAATTATTCA--TATTA--------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13265113 101 + 26754465 TTTATAGAAGCTGAGAATGATGTCTTGGGAGAAACTGTGGATGCTTTCAGAAGAGTA-CATATTTTGTTGTTACAGA-TTTTATTTTAAAATTATTCA--TATTA--------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4166371 101 - 5137665 TTTATAGAAGCTGAGAATGATGTCTTGGGAGAAACTGTGGATGCTTTCAGAAGAGTA-CATATTTTGTTGTTACAGA-TTTTATTTTAAAATTATTCA--TATTA--------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122881227 99 - 135778131 TTTATAGAAGCTGAGAATGATGTCTTGGGAGAAACTGTGGATGCTTTCAGAAGAGTA-CATATTTTGTTGTTAC--A-TTTTATTTTAAAATTATTCA--TATTA--------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1983056 101 + 2427316 TTTATAGAAGCTGAGAATAATGTCTTGGGAGAAACTGTGGATGCTTTCAGAAGAGTA-CATATTTTGTTGTTACAGA-TTTTATTTTAAAATTATTCA--Tatta--------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1276617 101 + 1448899 TTTATAGAAGCTGAGAATGATGTCTTGGGAGAAACTGTGGATGCTTTCAGAAGAGTA-CATATTTTGTTGTTACAGA-TTTTATTTTAAAATTATTCA--TATTA--------- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52998162 96 - 190850796 TTTCTAGAAGCTGAGAATGATGTCTTGGGAGAAAGTGTGGATGCTTTCAGAAGAG-----TATTTTGTTGTTACAGA-TTTTATTTTAAACTTATTCA--CATT---------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8161960 101 - 15139346 TTTCTAGAAGCTGAGAATGATGTCTTGGGAGAAACTGTGGATACTTTCAGAAGAGTA-GATAGTTTGTTGTTACAGA-TTTTATTTTAAACTTATTCA--CATTA--------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6945892 103 - 7304997 TTTCTAGAAGCTGAGAATGATGTCTTGGGAGAAACTGTGGATACTTCCAGAAGAGTA-GATACTTTGTTGTTACAGA-TTTTATTTTAAACTTATTCAATTATTA--------- i cebCap1.NW_016107439v1 C 0 I 16 s aotNan1.NW_018493494v1 9363928 101 - 11631747 TTTCTAGAAGCTGAGAATGATGTCTTGGGAGAAACTGTGGATACTTTCAGAAGAGTA-GATATTTTGTTGTTACAGA-TTTTATTTTAAACTTATTCA--CATTA--------- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1770246 98 + 3286835 TTCCTGGAAGCTGAGGATGAAGTCTTGGGAGGAACTGTGGCTGCTTTAAGAAGAGCA-GATATTTTGTTGTTACAGA-TTTGATTTTAAACTTATTCA--CA------------ i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1859006 98 + 4188776 TTCCTGGAAGCTGAGGATGAAGTCTTGGGAGGAACTGTGGATGCTTTAAGAAGAGTA-GACATTTTGTTGTTACAAA-TTTGATTTTAAACTTATTTA--CA------------ i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76404360 93 + 151834684 GTTTCCGTAACACAGGTGGGAGTCTTGGGAGAAACTGTGGATACTT---GATGAATA------TGCTCTGTTACAGA-TTTCATTTGAAACGTATTCA--TGCTA--------- i mm10.chr5 C 0 C 0 s canFam3.chr13 47970548 96 + 63241923 TTCCTAGCAGCTGAGAATGAAGTCTTGGCAGAAACTGTGGATCCTT------GAGTAAGATATTTTGTTGTTGTAAA-TTCTATTTTAAACTTATTCA--CATTG--------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4084262 110 - 5279953 TCCCTAGCAGTTGAAAATGAGGTCTTGGAAGTAATTGTGCATTCTCGAAGAAAGGCA-GATATTTTATTGTCTGAAA-TGTTATTTTAAACTTATTTC--CATTAAATCAATTA i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8597130 0 + 8790067 C a score=50035.000000 s hg38.chr4_KI270787v1_alt 42634 6 + 111943 TGATC-C s panTro5.chr4 119607669 6 - 194502333 TGATC-C i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021087 6 - 195804263 TGATC-C i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4452394 6 - 17550833 TGATC-C i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69325366 6 - 118206036 TGATC-C i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529015 6 - 190429646 TGATC-C i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110697154 6 - 189454096 TGATC-C i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13265214 6 + 26754465 TGATC-C i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4166472 6 - 5137665 TGATC-C i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122881326 6 - 135778131 TGATC-C i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1983157 6 + 2427316 tgatc-c i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1276718 6 + 1448899 TGATC-C i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52998258 6 - 190850796 TTATT-A i calJac3.chr3 C 0 I 16 s saiBol1.JH378162 8162061 6 - 15139346 TTATT-A i saiBol1.JH378162 C 0 I 16 s aotNan1.NW_018493494v1 9364029 6 - 11631747 TTATT-A i aotNan1.NW_018493494v1 C 0 I 16 s micMur3.chrUn_NW_017968520v1 1770344 5 + 3286835 TGATC-- i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1859104 6 + 4188776 TGATCA- i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76404453 6 + 151834684 TGATC-C i mm10.chr5 C 0 C 0 s canFam3.chr13 47970644 6 + 63241923 TGATC-C i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4084372 6 - 5279953 TGACC-T i dasNov3.JH568349 C 0 C 0 e cebCap1.NW_016107439v1 6945995 16 - 7304997 I e otoGar3.GL873602 8597130 0 + 8790067 C a score=3712169.000000 s hg38.chr4_KI270787v1_alt 42640 276 + 111943 ATTTATTAGATGAAATACTAGGCATTTCTTAAAATGGACTCATAGGAGG----ATATTTAACG-AAA---------------------------AAGGCAATACATATTTTAAGCTTTTTCCTGATTTTTATGG-TACATTG-AAATTATTTTATGTAATTAAT-AAAAATAAAT---ATG---AGACAGATAACAGGCC-CA-----CTATTGGTAGATTCCAACTCAGAAATCAATTTCAATA-TTTGTGTAGCATC-ATTTCACAGAAATGTTCTTACTTTCTAAACTTCTCCCAGGTACATCAACAGTTCCTGTTGGTGGA s panTro5.chr4 119607675 276 - 194502333 ATTTATTAGATGAAATACTAGGCATTTCTTAAAATGGAGTCGTAGGAGG----ATATTTAATG-AAA---------------------------AAGGCAATACATATTTTAAGCTTTTTCCTGATTTTTATGG-TACATTG-AAATTATTTTATGTAATTAAT-AAAAATAAAT---ATG---TGACAGATAACAGGCC-CA-----CTATTGGTAGATTCCAACTCAGAAATCAATTTCAATA-TTTGTGTAGCATC-ATTTCACAGAAATGTTCTTACTTTCTAAACTTCTCCCAGGTACATCAACAGTTCCTCTTGGTGGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021093 276 - 195804263 ATTTATTAGATGAAATACTAGGCATTTCTTAAAATGGAGTCGTAGGAGG----ATATTTAATG-AAA---------------------------AAGGCAATACATATTTTAAGCTTTTTCCTGATTTTTATGG-TACATTG-AAATTATTTTATGTAATTAAT-AAAAATAAAT---ATG---TGACAGATAACAGGCC-CA-----CTATTGGTAGATTCCAACTCAGAAATCAATTTCAATA-TTTGTGTAGCATC-ATTTCACAGAAATGTTCTTACTTTCTAAACTTCTCCCAGGTACATCAACAGTTCCTCTTGGTGGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4452400 276 - 17550833 ATTTATTAGATGAAATACTAGGCATTTCTTAAAATGGAGTCGTAGGAGG----ATATTTAATG-AAA---------------------------AAGGCAATACATATTTTAAGCTTTTTCCTGATTTTTATGG-TACATTG-AAATTATTTTATGTAATTAAT-AAAAATAAAT---ATG---TGACAGATAACAGGCC-CA-----CTATTGGTAGATTCCAACTCAGAAATCAATTTCAATA-TTTGTGTAGCATC-ATTTCACAGAAATGTTCTTACATTCTAAACTTCTCCCAGGTACATCAACAGTTCCTCTTGGTGGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69325372 254 - 118206036 ACTTATTAGATGAAATACTAGGCATTTCTTAAAATGGAGTTGTAGAAGG----ATATTTAATG-AAA---------------------------AAGGAAACACATATTTTAAGCTTTTTCCTGATTTTTATGG-TACATTG-AAATTATTTTATGTAATTAAT-AAAAATAAAT---ATC---TGACAGATAACAGGCC-CA-----CTATCGGTAGATTCCAACTCAGAAATCAATTTCAATA-TTTGTGTAGCATC-ATTTCGCAGAAATGTTATTACTTTCTAAATTTCTC----------------------TTGGTGGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529021 281 - 190429646 ATGTATTAGATAAAATACTAGGCACTTCTTaaaatggggttgtagaagg----atatttaatg-aaa---------------------------aaggaaatacatatttcaagctttctcctgatttttatgg-tacATTG-AAATTATTTTATGTAATTAATAAAAAATAAAT---ATG---TGACAGAT-ACAGGCC-CACTATTCTATTGGTAGATTCCAACTCAGAAATCAATTTCAATA-TTTGTGTAACATC-ATTTCACAGAAATGTTCGTACTTTCTAAACTTCTCCCAGGTATATCAACAGTTCCTCTTGGTGCA i rheMac8.chr5 C 0 I 8 s macFas5.chr5 110697160 281 - 189454096 ATGTATTAGATAAAATACTAGGCACTTCTTaaaatggggttgtagaagg----atatttaatg-aaa---------------------------aaggaaatacatatttcaagctttctcctgatttttatgg-tacATTG-AAATTATTTTATGTAATTAATAAAAAATAAAT---ATG---TGACAGAT-ACAGGCC-CACTATTCTATTGGTAGATTCCAACTCAGAAATCAATTTCAATA-TTTGTGTAACATC-ATGTCACAGAAATGTTCGTACTTTCTAAACTTCTCCCAGGTATATCAACGGTTCCTCTTGGTGCA i macFas5.chr5 C 0 I 8 s macNem1.NW_012012466v1 13265220 281 + 26754465 ATGTATTAGATAAAATACTAGGCACTTCTTaaaatggggttgtagaagg----atatttaatg-aaa---------------------------aaggaaatacatatttcaagctttctcctgatttttatgg-tacATTG-AAATTATTTTATGTAATTAACAAAAAATAAAT---ATG---TGACAGAT-ACAGGCC-CACTATTCTATTGGTAGATTCCAACTCAGAAATCAATTTCAATA-TTTGTGTAACATC-ATTTCACAGAAATGTTCATACTTTCTAAACTTCTCCCAGGTATATCAACAGTTCCTCTTGGTGCA i macNem1.NW_012012466v1 C 0 I 8 s cerAty1.NW_012001307v1 4166478 280 - 5137665 ATTTATTAGATAAAATACTAGGCACCTCTTAAAATGGGGTTGTAGAAGG----ATATTTAATG-AAA---------------------------AGAGAAATACATATTTTAAGCTTTCTCCTGATTTTTATGA-TACATTG-AAATTATTTTATGTAATTAAT-AAAAATAAAT---ATG---TGACAGAT-ACAGGCC-CACTATTCTATTGGTAGATTCCAACTCAGAAATCAGTTTCAATA-TTTGTATAACATC-ATTTCACAGAAATGTTCTTACTTTCTAAACTTCTCCCAGGTATATCAACAGTTCCTCTTGGTGCA i cerAty1.NW_012001307v1 C 0 I 8 s chlSab2.chr7 122881332 280 - 135778131 ATTTATTAGATAAAATACTAGGCACCTCTTAAAATGGGGTTGTAGAAGG----ATATTTAATG-AAA---------------------------AAGGAAATACATATTTTAAGCTTTCTCCTGATTTTTATGG-TACATTG-AAATTATTTTATGTAATTAAT-AAAAATAAAT---ACG---TGACAGAT-ACAGGCC-CACTATTCTATTGGTAGATTCCAACTCAGAAATCAGTTTCAATA-TTAGTATAACATC-ATTTCACAGAAATGTTCTTACTTTCTAAACTTCTCCCAGGTATATCAACAGTTCCTCTTGGTGCA i chlSab2.chr7 C 0 I 8 s manLeu1.NW_012104388v1 1983163 280 + 2427316 atttattagataaaatactaggcacctcttaaaatggggttgtagaagg----atatttaatg-aaa---------------------------agggaaaTACATATTTTAAGCTTTCTCCTGATTTTTATGA-TACGTTG-AAATTATTTTATGTAATTAAT-AAAAATAAAT---ATG---TGACATAT-ACAGGCC-CACTATTCTATTGGTAGATTCCAACTCAGAAATCAGTTTCAATA-TTTGTATAACATC-ATTTCACAGAAATGTTCTTACTTTCTAAACTTCTCCCAGGTATATCAACAGTTCCTCTTGGTGCA i manLeu1.NW_012104388v1 C 0 I 8 s colAng1.NW_012119221v1 1276724 280 + 1448899 ATTTATTAGATAAAATACTAGGCACTTCTTaaaatggggttgtagaagg----acatttaatg-aaa---------------------------aaggaaatacatattttaagctttctcctgatttttatcg-tacATTG-AAATTATTTTATGTAATTAAT-AAAAATAAAT---ATG---TGACAGAT-ACAGGCC-CACTATTCTATTGGTAGATTCCAACTCAGAAATCAATTTCAATA-TTTGTGTAACATC-ATTTCACAGAAATGTTCTTACTTTCTATACATCTCCCAGATATATCAACAGTTCCTCTTGGTGCA i colAng1.NW_012119221v1 C 0 I 16 s calJac3.chr3 52998280 275 - 190850796 ATTTATTAGATGAAATACTAGGCACTTCTTAAAATGGAGTTGTAGAAGG----ATAGTTAATG-AAA---------------------------AAGGAAATACATATTTTAAGCTTTTTCCTGATTTTTATGG-TACATTG-aaattatcttatataattaat-aaaaataaat---atG---TGACAGAT-ACAGGCC-CA-----CTAGTGGTCCATTCCAGCTCAGAAATAAATTTCAGTA-TTTGTGTAGCATC-ATTTCACAGAAACGTTCTTACTTTCTAAACTTCTCCCAGGTACATCAACAGTTCCTCTTGGTGGA i calJac3.chr3 I 16 I 1 s saiBol1.JH378162 8162083 279 - 15139346 ATTTATTAGACGAAATACTAGGCACTTCTTAAAATGGAGTTGTAGAAGGATGTATAGTTAATG-AAA---------------------------AAGGGAATATATATTTTAAGCTTTTTCCTGATTTTTATGG-TACATTG-aaattattttataaaattaat-aaaaataaat---atG---TGACAGAT-ACAGGCC-CA-----CTAGTGGTCCATTCCAACTCAGAAATAAATTTCAATA-TTTGTGTAGCATC-ATTTCACAGAGACACTCTTACTTTCTAAACTTCTCCCAGGTACATCAACAGTTCCTCTTGGTGGA i saiBol1.JH378162 I 16 I 1 s cebCap1.NW_016107439v1 6946011 275 - 7304997 ATTTATTAGATGAAATACTAGGCACTTCTTAAAATGGAGTTGTAGAAGG----ATAGTTAATG-AAA---------------------------AAGGAAATACATATTTTAAGCTTTTTCGTGATTTTTATGG-TACATTG-AAATTATTTTATGTAATTAAC-AAAAATAAAT---ATG---TGACAGAT-ACAGGCC-CA-----CTAGTGGTCCATTCCAACTCAGAAATAAATTTCAATA-TTTGTGTAGCATCAATTTCACAGAAATG-TCTTACTTTCTAAACTTCTCCCAGGTGCATCAACAGTTCCTCTTGGTGGA i cebCap1.NW_016107439v1 I 16 I 1 s aotNan1.NW_018493494v1 9364051 275 - 11631747 ATTTATTAGATGAAATACTAGGCACTTCTTAAAATGGAGTTGTAGAAGG----ATAGTTAATG-AAA---------------------------AAGGAAATACATATTTTAAGCTTTTTCCTGATTTTCATGG-TACATTG-AAATTATTTTATGTAATTAAT-AAAAATAAAT---ATG---TGACAGAT-ACAGACC-CA-----CTAGTGGTCCATTCCAACTCAGAAATAAATTTCAGTA-TTTGTGTAACATC-ATTTCACAGAAATGTTCTTACTTTCTAAACCTCTCCCAGGTACATCAACAGTTCCTCTTGGTGGA i aotNan1.NW_018493494v1 I 16 I 1 s micMur3.chrUn_NW_017968520v1 1770349 277 + 3286835 ATCCATCAAATGGAATACTAAGCACTTGTTAAAATGAAGTTGTAGGAAA----ATACTTAATGAAAA---------------------------AAGGAAATACTTGTTTTCA--TTTTTCCTGATTTTTATGG-CATATTGCAAATTATTTCATGTAATTAAT-AAAAATAAATATAATG---TAGCAGAT-ATGGGTC-CA-----GGATTGGTAGACTGCAACTTAG-AATAAATTCTAATG-TTTGTGCAGCATC-ATTTCACAGAAATCTTCTTACTTTCTAAACTTCTCCCAGTTACATCAATAGTTCCTCTTGGTGGA i micMur3.chrUn_NW_017968520v1 C 0 I 1 s proCoq1.NW_012140747v1 1859110 264 + 4188776 ATTCATTAAATGGAATACTAGGCTTTTCTTAAAATGAAGTTGTAGGAAA----ATATTTAATG-AAA---------------------------AAGGAAACGCTTGTTTTAA--TTTTTCCTGATTTTTATGA-TATATTGAAAATTATTTCACGTAATTAAT-AAAAATAAATATAATA---TAGCTGA-------------------ATTGGTAGATTGCAACTCAG-AATAAATTCTAATG-TTTGTGCAACATC-ATTTCACAGAAATCTTCTTACTTTCTAAACTTCTCCTAGTTACATCAACAGTTCCTGTTGGTGGA i proCoq1.NW_012140747v1 C 0 I 1 s mm10.chr5 76404459 234 + 151834684 AGTCATTAGATAAAATACAGAGCACCTG-TGAGATGGAAATATAGGAGG----ATAACTAATG-GAGTGCTCATTTTTCATTTCTCTTGCCTTTATGGAAGCCCAT-TTTTAG---TTTTCTTGatttttat-----tattgtacattattttatataattact-aaaaataaat---ataaCTTGGCAGAT-CCGGGCC-AA-------------------------------------------------------G-A----ACTGAGATATGCTTAC----------TCGCTTAGGTTTACCCATGATTCCTCATGATGGA i mm10.chr5 C 0 I 1 s canFam3.chr13 47970650 277 + 63241923 ATTCCTTGGGTGGAATACTAGGCGTTTATTGAAATGATGTTGTAGAAGG----ATATTTAATAAAAA---------------------------AAGGGAATGCCCATTTTAATTTGTTTC----TTTTTATGGTTATACTGaaaaatattttatgtaattaat-caaaataaatataatG---TGGTAGAT-GTAGACTGCA-----GAATTGGTGGATTGCAATTCAGAAATATATTCCAATG-TTTGTGCAACATT-ATCACACAGAAATATTACTACTTTCCAAACTTCTTCCAGCTACATCAAGAGTTGCTCTTGGTGA- i canFam3.chr13 C 0 I 1 s dasNov3.JH568349 4084378 273 - 5279953 ATTCATTAGATAGAATACCAAACACATCTTAAAATTGTGTTGTGGAAGG----ATATTTAATG-GAA---------------------------AA--AAATATCCATTTTAA--TTTTTCCTTCTTTTCATGa-tatattt-aaaatattttatgtaattaat-aaaactatat--aata---tGGTAGAT-ATAGACC-CA-----GAATTATTAGACTACAACTCAGAAATAAATCCCAATGCTTTATGTAGCATT-ATTACACAGAAATGTTCTTACTTTCTAAACTTGTCCCAGTTACATCAAGAATTCCTCTGGGTGGA i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8597130 0 + 8790067 C a score=-22164.000000 s hg38.chr4_KI270787v1_alt 42916 3 + 111943 -AGG s panTro5.chr4 119607951 3 - 194502333 -AGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021369 3 - 195804263 -AGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4452676 3 - 17550833 -AGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69325626 3 - 118206036 -AGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529310 2 - 190429646 -GG- i rheMac8.chr5 I 8 I 6 s macFas5.chr5 110697449 2 - 189454096 -GG- i macFas5.chr5 I 8 I 6 s macNem1.NW_012012466v1 13265509 2 + 26754465 -GG- i macNem1.NW_012012466v1 I 8 I 6 s cerAty1.NW_012001307v1 4166766 2 - 5137665 -GG- i cerAty1.NW_012001307v1 I 8 I 6 s chlSab2.chr7 122881620 2 - 135778131 -GG- i chlSab2.chr7 I 8 I 6 s manLeu1.NW_012104388v1 1983451 2 + 2427316 -GG- i manLeu1.NW_012104388v1 I 8 I 6 s calJac3.chr3 52998556 2 - 190850796 -GA- i calJac3.chr3 I 1 C 0 s saiBol1.JH378162 8162363 2 - 15139346 -TA- i saiBol1.JH378162 I 1 C 0 s cebCap1.NW_016107439v1 6946287 2 - 7304997 -GA- i cebCap1.NW_016107439v1 I 1 C 0 s aotNan1.NW_018493494v1 9364327 2 - 11631747 -GA- i aotNan1.NW_018493494v1 I 1 C 0 s micMur3.chrUn_NW_017968520v1 1770627 2 + 3286835 -GA- i micMur3.chrUn_NW_017968520v1 I 1 C 0 s proCoq1.NW_012140747v1 1859375 2 + 4188776 -GA- i proCoq1.NW_012140747v1 I 1 C 0 s mm10.chr5 76404694 2 + 151834684 -GA- i mm10.chr5 I 1 C 0 s canFam3.chr13 47970928 2 + 63241923 -GA- i canFam3.chr13 I 1 C 0 s dasNov3.JH568349 4084651 3 - 5279953 AAA- i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8597130 0 + 8790067 C e colAng1.NW_012119221v1 1277004 16 + 1448899 I a score=953022.000000 s hg38.chr4_KI270787v1_alt 42919 69 + 111943 CCAGTGTGGAAATTTTTTAGGTTGGAAGAATCTG---TC---ATTAC-CCAGGAATGTACAGATATTTTCTCATAA s panTro5.chr4 119607954 69 - 194502333 CCAGTGTGGAAATTTTTTAGGGTGGAAGAATCTG---TC---ATTAC-CCAGGAATGTACAGATATTTTCTGATAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021372 69 - 195804263 CCAGTGTGGAAATTTTTTAGGGTGGAAGAATCTG---TC---ATTAC-CCAGGAATGTACAGATATTTTCTGGTAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4452679 69 - 17550833 CCAGTGTGGAAATTTTTTAGGGTGGAAGAACCTG---TC---ATTAC-CCAGGAATGTACAGATATTTTCTCATAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69325629 69 - 118206036 CCAGTGTGGAAATTTTTCAGGGTGGAAGAATCTG---TC---ATTAC-CCAGGAATGTATAGATATTTTCTCATAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529318 69 - 190429646 CCAGTGTGGAAATTTTTCAGGGTGAAAGAATCTG---TC---ATTAC-CCAGGAATGCACAGATATTTTCTCATAA i rheMac8.chr5 I 6 C 0 s macFas5.chr5 110697457 69 - 189454096 CCAGTGTGGAAATTTTTCAGGGTGAAAGAATCTG---TC---ATTAC-CCAGGAATGCACAGATATTTTCTCATAA i macFas5.chr5 I 6 C 0 s macNem1.NW_012012466v1 13265517 69 + 26754465 CCAGTGTGGAAATTTTTCAGGGTGAAAGAATCTG---TC---ATTAC-CCAGGAATGCACAGATATTTTCTCATAA i macNem1.NW_012012466v1 I 6 C 0 s cerAty1.NW_012001307v1 4166774 69 - 5137665 CCAGTGTGGAAATTTTTAAGGGTGAAAGAATCTG---TC---ATTAC-CCAGGAATGCACAGATATTTTCTCATAA i cerAty1.NW_012001307v1 I 6 C 0 s chlSab2.chr7 122881628 69 - 135778131 CCAGTGTGGAAATTTTTCAGGGTGAAAGAATCTG---TC---ATTAC-CCAGGAATGCACAGATATTTTCTCATAA i chlSab2.chr7 I 6 C 0 s manLeu1.NW_012104388v1 1983459 69 + 2427316 CCAGTGTGGAAATTTTTCAGGGTGAAAGAATCTG---TC---ATTAC-CCAGGAATGCACAGATATTTTCTCATAA i manLeu1.NW_012104388v1 I 6 C 0 s colAng1.NW_012119221v1 1277020 69 + 1448899 CCAGTGTGGAAATTTTTCAGGGTGAAAGAATCTG---TC---ATTAC-CCAGGAATGCACAGATATTTTCTCATAA i colAng1.NW_012119221v1 I 16 C 0 s calJac3.chr3 52998558 69 - 190850796 CCAGTGCGGAAATGTTTCCGGGTGGAAGAATCTG---TC---ATTAC-GCAGGAATGTACAGATATTTTCTCATAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8162365 69 - 15139346 CCAGGGTGGAAATGTTTCAGGGTGGAAGAATCTG---TC---ATTAC-CCAAGAATGTACAGATATTTTCTCATAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6946289 69 - 7304997 CCAGTGTGGAAATGTTTCAGGGTGGAAGAATCTG---TC---ATTAC-CCAGGAATGTACAGATATTTTTTCACAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9364329 69 - 11631747 CCAGGGTGGAAATGTTTCAGGGTGGAAGAATCTG---TC---ATTAC-CCAGGAATGTACAGATATTTTCTCATAG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1770629 72 + 3286835 CCAGTGTGGAAATTTTTCAGGGTGAGAGAACCTGTCTTC---ATTAT-GCAAGAATATATAGATATTTTCTCATAC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1859377 72 + 4188776 CCAGTGTGGAAATTTTTCAGGGTGAAAGAACCTGTCTTC---ATTGT-GCAGGAATATATAGATATTTTCTCATAG i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76404696 42 + 151834684 -----GTAG-------TGAGTGTGGAAGGATCTGCCTTC---ATCAT-CAAGGAAGGT------------------ i mm10.chr5 C 0 C 0 s canFam3.chr13 47970930 70 + 63241923 ACGGTATGGAAATTTTTCAGG--GGAAGAACTTG---TCTTAATTACATCAGGAACATGTAGATATTTCCTCATA- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4084654 72 - 5279953 GCACTGTGGGAATTGCTAAGGGCAAAAAACATTGTTTTC---GTTAC-ACAGGAACGTACAGTTATTTTACCATAG i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8597130 0 + 8790067 C a score=728665.000000 s hg38.chr4_KI270787v1_alt 42988 60 + 111943 TTCATCTGAGTAATTACCAGACAATGGCCCTG-AAAAAAAGAC--TGAATAACTGACTACCAA s panTro5.chr4 119608023 60 - 194502333 TTCATCTGAGTAATTACCAGACAATGGCCCTG-AAAAAAAGAC--TGAATAACTGACTACCAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021441 60 - 195804263 TTCATCTGAGTAATTACCAGACAATGGCCCTG-AAAAAAAGAC--TGAATAACTGACTACCAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4452748 60 - 17550833 TTCATCTGAGTAATTACCAGACAATGGCCCTG-AAAAAAAGAC--TGAATAACTGACTACCAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69325698 60 - 118206036 TTCATCTGAGTAATTACCAGACAGTGGCCCTG-AAAAAAAGAC--TGAATAACTGACTACCAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529387 59 - 190429646 TTCACCTGAGTAATTACCAGACAATGGCCCTG--AAAAAAGAC--TGAATAACTAAGTACCAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110697526 59 - 189454096 TTCACCTGAGTAATTACCAGACAATGGCCCTG--AAAAAAGAC--TGAATAACTAAGTACCAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13265586 59 + 26754465 TTCACCTGAGTAATTACCAGACAATAGCCCTG--AAAAAAGAC--TGAATAACTAAGTACCAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4166843 59 - 5137665 TTCACCTGAGTAATTACCAGACAATGGCCCTG--AAAAAAGAC--TGAATAACTGAGTACCAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122881697 59 - 135778131 TTCACCTGAGTAATTACCAGACAATGGCCCTG--AAAAAAGAC--TGAATAACTGAGTACCAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1983528 55 + 2427316 TTCACCTAAG----TACCAGACAATGGCCCTG--AAAAAAGAC--TGAATAACTGAGTACCAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277089 59 + 1448899 TTCACCTGAGTAATTACCAGAAAATGGCCCTG--AAAAAAGAC--TGAATAACTGAGTACCAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52998627 56 - 190850796 TTTATCTGAGCAATTACTAGACAATGGGCCTA-AAAAAGAGCC--TGAAT---TGAGTACCA- i calJac3.chr3 C 0 I 315 s saiBol1.JH378162 8162434 56 - 15139346 TTCATCTGAGCAACTACTAGACAATGAGCCTA-AAAAA-AGCC--TGAAT---TGAGTACCAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6946358 57 - 7304997 TTCATCTGAGCAATTACTAGACAATGGGCCTT-TAAAAAAGCC--TGAAT---TGAGTACCAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9364398 57 - 11631747 TTCGTCTGAGCAATTACTAGACAATAGGCCTA-AAAAAAAGCC--TGAAT---TGGGTACCAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1770701 60 + 3286835 TTCATCTGAGCAATTACCAGACAATGGCCGTG-AAAAAAAGAC--TGAATAATTAAGTACCAA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1859449 59 + 4188776 TTCATCTGAGCAATTACCAGACAACAGCCCTG--AAAAAAGAC--TGAACAATTAAGTACCAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8597130 59 + 8790067 TTCATCTGAGCGACCACCTGACAAGGGCCCTG--GAGAAAGAC--TGAGTAACTGAGTGCCAA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76404738 9 + 151834684 ------------------------------------------------------GAGTGCCAA i mm10.chr5 C 0 C 0 s canFam3.chr13 47971000 59 + 63241923 -TGATACAGGCTATTGCCA-ACAACAACCCTA--AGAAAAGACTATGGATAGCTGAGTATGAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4084726 61 - 5279953 TTCATCTGAGCAATTATTAGACAATGATGCTGAAAAAAAACAC--TGAATAACCAAGTACCAA i dasNov3.JH568349 C 0 C 0 a score=137586.000000 s hg38.chr4_KI270787v1_alt 43048 9 + 111943 AGAAACTT-G s panTro5.chr4 119608083 9 - 194502333 AGAAACTT-G i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021501 9 - 195804263 AGAAACTT-G i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4452808 9 - 17550833 AGAAACTT-G i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69325758 9 - 118206036 AGAAACCT-G i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529446 9 - 190429646 AGAAATCT-G i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110697585 9 - 189454096 AGAAATCT-G i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13265645 9 + 26754465 AGAAATCT-G i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4166902 9 - 5137665 AGAAATCT-G i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122881756 9 - 135778131 AGAAATCT-G i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1983583 9 + 2427316 AGAAATCT-G i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277148 9 + 1448899 AGAAATCT-G i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52998998 9 - 190850796 AGAAACCT-A i calJac3.chr3 I 315 C 0 s saiBol1.JH378162 8162490 9 - 15139346 AGAAACTT-G i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6946415 9 - 7304997 AGAAACCT-G i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9364455 9 - 11631747 AGAAACCT-G i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1770761 9 + 3286835 AGAAATTT-G i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1859508 9 + 4188776 AGAAACTT-G i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8597189 9 + 8790067 AGAAATCT-G i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76404747 10 + 151834684 AGAAACTTAA i mm10.chr5 C 0 C 0 s canFam3.chr13 47971059 9 + 63241923 AGAAATTT-G i canFam3.chr13 C 0 I 162 s dasNov3.JH568349 4084787 8 - 5279953 AGAAACAT-- i dasNov3.JH568349 C 0 C 0 a score=4583840.000000 s hg38.chr4_KI270787v1_alt 43057 342 + 111943 GATTTCTTTAA--------------CG-CATCATCTTCTATATTGACATGTAAAGATTATTTAATTCAAAATTCCAAAGAGGAG------TTGAAATTAC--TCCTGATT-AGTT-ATACTATTGAATCATCGAA-------------------------------------------------TATGTCAATGGGTAATCTATGGTCAGGTTCAACTAG-CTCCTA--GTTCTAGAGATGATCATAAAT-ATGAAGG-CATTATAGAAG----ATATGTAATCTTTGGTTGTAGCTCTCTACCAGAATTTTAACTGAAAAAGTTAATGCTTCTATTACATACTT-ACAGATGTGATTAATACAAGGAAATCTGAGTTTAAATTATCAGAGATAATGTTTGTTCCAGCCCTGAAAGAAAATG-----GG----GG s panTro5.chr4 119608092 342 - 194502333 GATTTCTTTAA--------------CG-CATCATCTTCTATACTGACATGTAAAGATTATTTAATTCAAAATTCCAAAGAGGAG------TTGAAATTAC--TCCTGATT-AGTT-ATACTATTGAATCATCGAA-------------------------------------------------TATGTCAATGGGTAATCTATGGTCAGGTTCAACTAG-CTCCTA--GTTCTAGAGATGATCATAAAT-ATGAAGG-CATTATAGAAG----ATATGTAATCTTTGGTTGTAGCTCTCTACCAGAATTATAACTGAAAAAGTTAATGCTTCTATTACGTACTT-ACAGATGTGATTAATACAAGGAAATCTGAGTTTAAATTATCAGAGATAATGTTTGTTCCAGCCCTGAAAGAAAATG-----GG----GG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021510 342 - 195804263 GATTTCTTTAA--------------CG-CATCATCTTCTATACTGACATGTAAAGATTATTTAATTCAAAATTCCAAAGAGGAG------TTGAAATTAC--TCCTGATT-AGTT-ATACTATTGAATCATCGAA-------------------------------------------------TATGTCAATGGGTAATCTATGGTCAGGTTCAACTAG-CTCCTA--GTTCTAGAGATGATCATAAAT-ATGAAGG-CATTATAGAAG----ATATGTAATCTTTGGTTGTAGCTCTCTACCAGAATTTTAACTGAAAAAGTTAATGCTTCTATTACGTACTT-ACAGATGTGATTAATACAAGGAAATCTGAGTTTAAATTATCAGAGATAATGTTTGTTCCAGCCCTGAAAGAAAATG-----GG----GG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4452817 320 - 17550833 GATTTCTTTAA--------------CG-CATCATCTTCTATATTGACATGTAAAGATTATTTAATTCAAAATTCCAAAGAGGAG------TTGAAATTAC--TCCTGATT-AGTT-ATACTATT-----------------------------------------------------------------------GTAATCTATGGTCAGGTTCAACTAG-CACCTA--GTTCTAGAGATGATCATAAAT-ATGAAGG-CATTATAGAAG----ATATGTAATCTTTGGTTGTAGCTCTCTACCAGAATTTTAACTGAAAAAGTTAATGCTTCTATTACGTACTT-ACAGATGTGATTAATACAAGGAAATCTGAGTTTAAATTATCAGAGATAATGTTTGTTCCAGCCCTGAAAGAAAATG-----GG----GG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69325767 343 - 118206036 GATTTCTTTAA--------------TG-CATCATCTTCTATATTGACATGTAAAGATTATTTAATTCAAAATTCCAAAGAGGAG------TTGAAACTAC--TACTGATG-AGTA-ATGCTATTGAATCATCGAA-------------------------------------------------TATGTCAATGGGTAATCTATGAACAGGTTCAACTAG-CTCCTC--GTTCTAGAGATGATCATAAAT-ATGAAGG-CATTATAGAAG----ATATGTAATCTTTGGTTGTAGCTCTCTACCAGAATTTTAACTGAAAAAGTTAATGCTTCTATTATGTACTTAACAGATGTGATGAATACAAGGAAATTTGAGTTTACATTATCAGAGATAATGGTTGCTCCAGCCCTGAAAGAAAATG-----GG----GG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529455 341 - 190429646 GAGTTCTTTAA--------------TG-CATCATCTTCTATGTTGACATGTAAAGATTATTTAATTTAAAATTCCAAAGAGGAG------TTGAAATTAC--TACTGATT-AGTTAATACTATTGAATCATCTAA-------------------------------------------------TATGTCAATGGGTAATCTATGGTCAGGTTCAACTAG-CTCC----AATCTAGAGATGATCATAAAT-ATGCAGG-CATTATAGAAG----ATATATAATCTTTGGTTGGAGTTCTCTACCAGAATCTTAACTGAAAAAGTTAATGCTTCTCTTACGTACTT-ACAGATGTGATAAATACAAGGAAATTGGAGTTTAAATTATCAGAGATAATGGTTGTTCCAGCCCTGAAAGAAAATG-----GG----GG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110697594 340 - 189454096 GAGTTCTTTAA--------------TG-CATCATCTTCTATGTTGACATGTAAAGATTATTTAATTTAAAATTCCAAAGAGGAG------TTGAAATTAC--TACTGATT-AGTT-ATACTATTGAATCATCTAA-------------------------------------------------TATGTCAATGGGTAATCTATGGTCAGGTTCAACTAG-CTCC----AATCTAGAGATGATCATAAAT-ATGGAGG-CATTATAGAAG----ATATATAATCTTTGGTTGGAGTTCTCTACCAGAATCTTAACTGAAAAAGTTAATGCTTCTCTTACGTACTT-ACAGATGTGATAAATACAAGGAAATTGGAGTTTAAATTATCAGAGATAATGGTTGTTCCAGCCCTGAAAGAAAATG-----GG----GG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13265654 340 + 26754465 GAGTTCTTTAA--------------TG-CATCATCTTCTATGTTGACATGTAAAGATTATTTAATTTAAAATTCCAAAGAGGAG------TTGAAATTAC--TACTGATT-AGTT-ATACTATTGAATCATCTAA-------------------------------------------------TATGTCAATGGGTAATCTATGGTCAGGTTCAACTAG-CTCC----AATCTAGAGATGATCATAAAT-ATGGAGG-CATTATAGAAG----ATATATAATCTTTGGTTGGAGTTCTCTACCAGAATCTTAACTGAAAAAGTTAATGCTTCTCTTACGTACTT-ACAGATGTGATAAATACAAGGAAATTGGAGTTTAAATTATCAGAGATAATGGTTGTTCCAGCCCTGAAAGAAAATG-----GG----GG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4166911 341 - 5137665 GAGTTCTTTAA--------------TG-CATCATCTTCTACGTTGACATGTAAAGATTATTTAATTTAAAATTCCAAAGAGGAG------TTGAAATTAC--TACTGATT-AGTT-ATACTATTGAATCATCTAA-------------------------------------------------TATGTCAATGGGTAATCTATGGTCAGGTTCAACTAG-CTCCT---ATTCTAGAGATGATCATAAAT-ATGGGGG-CATTATAGAAG----ATATATAATCTTTGGTTGGAGCTCTCTACCAGAATTTTAACTGTAAAAGTTAATGCTTCTCTTACGTATTT-ACAGATGTGATAAATACAAGGAAATTGGAGTTTAAATTATCAGAGATAATGGTTTTTCCAGCCCTGAAAGAAAATG-----GG----GT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122881765 341 - 135778131 GAGTTCTTTAA--------------TG-CATCATCTTCTATGTTGACATGTAAAGATTATTTAATTTAAAATTCCAAAGAGGAG------TTGAAATTAC--TACTGATT-AGTT-ATACTATTGAATCATCTAA-------------------------------------------------TATGTCAATGGGTAATCTATGGTCAGGTTCAACTAG-CTCCT---ATTCTAGAGATGATCATAAAT-ATGGGGG-CATTATAGAAG----ATATATAATCTTTGGTTGGAGCTCTCTACCAGAATTTTAACTGTAAAAGTTAATGCTTCTCTTACGTACTT-ACAGATGTGATAAATACAAGGAAATTGGAGTTTAAATTATCAGAGATAATGGTTGTTCCAGCCCTGAAAGAAAATG-----GG----GG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1983592 340 + 2427316 GAGTTCTTTAA--------------TG-CATCATCTTCTACGTTGACATGTAAAGATTATTTAATTTAAAATTCCAAAGAGGAG------TTGAAATTAC--TACTGATT-AGTT-ATA-TATTGAATCATCTAA-------------------------------------------------TATGTCAATGGGTAATCTATGGTCAGGTTCAACTAG-CTCCT---ATTCTAGAGATGATCATAAAT-ATGGGGG-CATTATAGAAG----ATATATAATCTTTGGTTGAAGCTCTCTACCAGAATTTTAACTGTAAAAGTTAATGCTTCTCTTACGTTTTT-ACAGATGTGGTAAATACAAGGAAATTGGAGTTTAAATTATCAGAGATAATGGTTTTTCCAGCCCTGAAAGAAAATG-----GG----GG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277157 341 + 1448899 GAGTTCTTTAA--------------TG-CATCATCTTCTATGTTGACATGTAAAGATTATTTAACTTAAAATTCCAAAGAGGAG------TTGAAATTAC--TACTAATT-AGTT-ATACTATTGAATCATCTAA-------------------------------------------------TATGTCAATGGGTAATCTACGGTCAGGTTCAACTAG-CTCCT---ATTCAAGAGATGATCATAAAT-ATGGAGG-CATTATAGAAG----ATATATAGTCTTTGGTTGGAGCTCTCTACCAGAATTTTAACTGAAAAAGTTAATGCTTCTCTTACGTACTT-ACAGATGTGATAAATACAAAGAAATTGGAGTTTAAATTATTGGAGATAATGGTTGTTCCAGCCCTGAAAGAAAATG-----GG----GG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999007 330 - 190850796 GAGTTCTTTAA--------------TG-CATCATATTCTATATTGACATATAAAGATTCTTTAACTTAAAATTCCAAAGAGGAG------CTGAAATTAC--TATGGATT-AGTT-ATACTATTGAGTCATCTAA-------------------------------------------------TATGTCAATGGGTAATCTATGGTCAGGTTCAACTAG-CTTTTA--GTTCTAGAGATTATCATAAATAATGGAGG-CATTATAGAAG----ACATATAATCTTTGGTTGGCGCTCTCAGCCAGACTTTTAGCTGAAAAAGTGAATGCTTCTATTACATACTT-ACAGATGTGATGAATGCAAGAAA------------ATTATCAGAGATAATGGTCGTTCCAGCCCTG-AAGAAAATG-----AG----GG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8162499 329 - 15139346 GAGTTCTTTAA--------------TG-CATCATCTTCTATATTGACATGTAAAGATTCTTTAACTTAAAATTCCAAAAAGGAG------CTGAAATTAC--TACTGATT-AGTT-ATACTACTGAGTCATCTAA-------------------------------------------------TATGTCAATGGGTAATCTATGGTCAGGTTCAACTAG-CTTCTA--GTTCTAAAGATTATCATAAAT-ATGATGG-CATTATAGAAG----ACATATCATCTTTGGTTATCGCTCTCAGCCAGACTTTCAGCTGAAAAAGTGAATGCTTCTATTACATACTT-ACAGATGTGATGAATACAAGGAA------------ATTATCAGAGATAATGGTTGTTCCAGCCCTG-AAGAAAACG-----AG----GG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6946424 330 - 7304997 GAGTTCTTTAA--------------TG-CATCATCTTCTATATTGACATGTAAAGATTCTTTAACTTAAAATTCCAAAGAGGAG------CTGAAATTAC--TACTGATT-AGTT-ATACTATTGAGTCATCTAA-------------------------------------------------TATGTCAATGGGTAATCTATGGTTAGGTTCAACTAG-CTTCTA--GTTCTAGAGATTATCATAAAT-ATGAGGG-CATTATAGAAG----ACATATAATCTTTGGTTATCGCTCTCAGCCAGACTTTTAGCTGAAAAAGTGAATGCTTCTATTACATACTT-ACAGATGGGATGAATACAAGGAA------------ATTATCAGAGATAATGGTTGTTTCAGCCCTGAAAGAAAACA-----AG----GG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9364464 330 - 11631747 GAATTCTTTAA--------------TG-CATCATCTTCTATATTGACATGTAAAGATTCTTTAACTTAAAATTCCAAAAAGGAG------CTTAAATTAC--TACTGATT-AGTT-ATACTATCGAGTCATCTAA-------------------------------------------------TATGTCAATGGGTAATCTATGGTCAGGTTCAACTAG-CTCCTA--GTTCTAGAGATTATCATAAAT-ATGGAGG-CATTATAGAAG----ACATATAATCTTTGGTTCTCGCTCTCAGCCAGATTTTTAGCTGAAAAAGTGAATGTTTCTATTACATACTT-ACAGATGTGATGAATACAAGGAA------------ATTATCAGAGATAATGGTTGTTCCAGCCCTGAAAGAAAACA-----AG----GG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1770770 336 + 3286835 TA-------AA--------------TG-CATCATCTTATATATTCA-ATGTAAACATTATTTAACTTAAAATTTCAAAAAGGAG------TTGAAATTAC--TATTGATT-AGTC-ATACTATTGAATCAACTA--------------------------------------------------------AATGGGTAATCTGTAGTCAGGTTCAGCCAG-CTCCCA--CCTCTAGAGCTGATCACAATT-AGGAAGATCATTATAGAAGATATATATATAATCTTTAGTTGTAGCTACCTGCCAGAATTTTAACTGAAAAAGTTAATGCTTCTATTGTGTACTT-ACAGATGTGATGAATACAAGGCAATTACAGTTTAAATTATCAGATTTAACAGGTGTTCCAGCACTGAAAGAAAAAG-GGGAGG----GA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1859517 321 + 4188776 TA-------AA--------------TG-CATTATCTTCTATATTGA-ATGTAAAGATTACTTAACTTAAAATTTCAAAAAGGAG------TTGAAATTAC--TATTGATT-AGTC-ATACTATTGAATCAACT---------------------------------------------------------AATGGGTAATGTGTGGTCAGGTTCAACCAG-CTCCCA--ACTCTAGAGCTGATCACAACT-ATGAAGATCATCACAGAGG----AAATATAATCTTTAGTTGTAGCTCCCTGCCAGAATTTTAACTGAAAAAGTTAATGTTTCTATTGGGTACTT-ACAAATGTGATAAA-----------TAGAGTTTAAATGATCAGATACAATGGTTGTTCCAGCCCTGAAAGAAAAAGTGGGGTG----GG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8597198 290 + 8790067 TA-------AA--------------TG-TACCTTCTTCTATACTGA-ACATAAAGATCATCAAATT---------------------------------------------------TACTACTGAATCATCT---------------------------------------------------------AATGGGCAATCCATAGTCAGGTTTATACAG-CTCCCA--ACTCTTGAGCTTATCACTAAT-GTAGAGATTGTT-TAGAGG----ATATATAATTTTTAGTTGTAGTTCCATGCCAGAATTTTAACTAGAGAAGTTAATACTTCTATTGTGTACTT-ACAGATGTGGTGAATAAAAGGAAATTCGAGTTTAAATTATCAGATATAATGGTTGTTCCAACCCTGAAAGAAAAAGGGGGAGG----GG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76404757 378 + 151834684 GAGTTCA--AG--------------TG-TGTTATCTTCTGTATTGACAt-----tatcattcccttgaaa----cagggcacagcacccattcacatcacattcctgtttcattt-gtaatcttgagatgacttggaagataggggcagtttggaggagggctgtaggttagtgtaaacactcttattcagagggcttgtgtatccacagatttgggtat-cttcaaggatcctagaaccagtcaccaaa-a----aa-tactaaaggat----gcctATAATCATGGGCTGTACCTCTCTGCCAGAATTTCAGCTCAGAAAGTTAATGCTACAGATATGTACAT-GTAGATATGAT---------GAAGTAGGAGATTTTCTACTCAGAGGTAATGGCTGTCCCAGCCCTGAAAGAAAACC-----CG----GG i mm10.chr5 C 0 I 120 s canFam3.chr13 47971230 336 + 63241923 taaatcttaaaaaaaaaAAGAAATTTG-CATCATCTTCTATACTGACATATAAAGATTATTTAACTTACAACTTCAAAAGAGAG------TTG-----------------------ATACTACTGAATCATCTAA---------------------------------------------------GGTCACGAGGTAATCTGTGGTCAGGTTCAACTGGCCTCCTA--GCTTTAGAGCTGACAACAAAT-ATGAAAG-TCATTTAGA------GTATATAATCACTGATTGTAGTTCCCTGCCAGAATTTTAACTAAAAAAGATAATGCTTCTATTGTATACTG-ACACATGTGATGAATACAAGGAAATGAGAATTTAAGC--TCAGAGATGATAGTTTTTCCAGCCCCTAAAGGAAAGG-----GGCTGTGG i canFam3.chr13 I 162 I 1 s dasNov3.JH568349 4084795 333 - 5279953 -----TTTAAA--------------TGTTATCATCTTCTATATTGACATATTAAGAGTATTTAATTTACAAAGTCAAGAAGAAG------TTGAAATTGT--TCTTGATA-AGCC-ATACTACGGAATCATTTAA---------------------------------------------------TGTCACTG-GTAATCTGTGGTCAGCTTCAACTAG-TCCTGA--CAGCTACAGCTGATCACAAAT-ATTAAGG-TCCTCTGGAGA------ATGTAATCATTGGTTTTAGTTCCCTGCCAGAATTTTAACTGGAAAACTTAATGCTTCTACTGCGTACTT-ACAGATTTAATGAAAACAAAGAAGTGCGAGTTTAAGTTATCCGTGATAATGGCTGTTGCAGCCCTGAAAGAAAAGG-----GG----GA i dasNov3.JH568349 C 0 I 13 a score=251011.000000 s hg38.chr4_KI270787v1_alt 43399 19 + 111943 ATTCAAGATGCATTGAAAA s panTro5.chr4 119608434 19 - 194502333 ATTCAAGATGCATTGAAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021852 19 - 195804263 ATTCAAGATGCATTGAAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453137 19 - 17550833 ATTCAAGATGCATTGAAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326110 19 - 118206036 TTTCAAGATGCATTGAAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529796 19 - 190429646 ATTCAAGATACATTGAAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110697934 19 - 189454096 ATTCAAGATACATTGAAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13265994 19 + 26754465 ATTCAAGATACATTGAAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167252 19 - 5137665 ATTCAAGATACATTGAAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882106 19 - 135778131 ATTTAAGATACATTGAAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1983932 19 + 2427316 ATTCAAGATACATTGAAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277498 19 + 1448899 ATTCAAGATACATTGAAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999337 17 - 190850796 ATTC-AGATGC-ATGAAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8162828 19 - 15139346 ATTCAAGATGCAATGAAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6946754 19 - 7304997 ATTCAAGAGGCAATGAAAA i cebCap1.NW_016107439v1 C 0 I 144 s aotNan1.NW_018493494v1 9364794 19 - 11631747 ATTCAAGATGCAATGAAAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1771106 19 + 3286835 ATTCAGGGTGCATTGAAAA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1859838 18 + 4188776 ATTCAGGGTGCACT-AAAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8597488 19 + 8790067 ACTCAGAGTGCATTGAAAA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47971567 19 + 63241923 ATTCAGAGACCACTGAGAA i canFam3.chr13 I 1 C 0 s dasNov3.JH568349 4085141 19 - 5279953 ATTCAAAGAACATGGAGAA i dasNov3.JH568349 I 13 C 0 e mm10.chr5 76405135 120 + 151834684 I a score=24823.000000 s hg38.chr4_KI270787v1_alt 43418 2 + 111943 AA s panTro5.chr4 119608453 2 - 194502333 AA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021871 2 - 195804263 AA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453156 2 - 17550833 AA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326129 2 - 118206036 AA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529815 2 - 190429646 AA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110697953 2 - 189454096 AA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266013 2 + 26754465 AA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167271 2 - 5137665 AG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882125 2 - 135778131 AG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1983951 2 + 2427316 AG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277517 2 + 1448899 AA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999354 2 - 190850796 AA i calJac3.chr3 C 0 I 264 s saiBol1.JH378162 8162847 2 - 15139346 AA i saiBol1.JH378162 C 0 I 133 s aotNan1.NW_018493494v1 9364813 2 - 11631747 AA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1771125 2 + 3286835 AA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1859856 2 + 4188776 AA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8597507 2 + 8790067 AC i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47971586 2 + 63241923 AA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4085160 2 - 5279953 AA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e cebCap1.NW_016107439v1 6946773 144 - 7304997 I a score=13395.000000 s hg38.chr4_KI270787v1_alt 43420 1 + 111943 T s panTro5.chr4 119608455 1 - 194502333 T i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021873 1 - 195804263 T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453158 1 - 17550833 T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326131 1 - 118206036 T i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529817 1 - 190429646 T i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110697955 1 - 189454096 T i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266015 1 + 26754465 T i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167273 1 - 5137665 T i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882127 1 - 135778131 T i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1983953 1 + 2427316 T i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277519 1 + 1448899 T i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999620 1 - 190850796 T i calJac3.chr3 I 264 C 0 s saiBol1.JH378162 8162982 1 - 15139346 T i saiBol1.JH378162 I 133 C 0 s aotNan1.NW_018493494v1 9364815 1 - 11631747 T i aotNan1.NW_018493494v1 C 0 I 144 s micMur3.chrUn_NW_017968520v1 1771127 1 + 3286835 G i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1859858 1 + 4188776 T i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8597509 1 + 8790067 T i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47971588 1 + 63241923 T i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4085162 1 - 5279953 T i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e cebCap1.NW_016107439v1 6946773 144 - 7304997 I a score=29615.000000 s hg38.chr4_KI270787v1_alt 43421 5 + 111943 GTCTA s panTro5.chr4 119608456 5 - 194502333 GTCTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021874 5 - 195804263 GTCTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453159 5 - 17550833 GTCTa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326132 5 - 118206036 GTCTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529818 5 - 190429646 GTGTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110697956 5 - 189454096 GTGTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266016 5 + 26754465 GTGTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167274 5 - 5137665 GTGTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882128 5 - 135778131 GTGTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1983954 5 + 2427316 GTGTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277520 5 + 1448899 GTGTa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999621 5 - 190850796 ATTTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8162983 5 - 15139346 ATTTT i saiBol1.JH378162 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1771128 3 + 3286835 --GTA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1859859 3 + 4188776 --GTA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8597510 3 + 8790067 --GTA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47971589 3 + 63241923 --GTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4085163 3 - 5279953 --ATa i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e aotNan1.NW_018493494v1 9364816 144 - 11631747 I e cebCap1.NW_016107439v1 6946773 144 - 7304997 I a score=49552.000000 s hg38.chr4_KI270787v1_alt 43426 3 + 111943 TTT s panTro5.chr4 119608461 3 - 194502333 TTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021879 3 - 195804263 TTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453164 3 - 17550833 ttt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326137 3 - 118206036 TTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529823 3 - 190429646 TTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110697961 3 - 189454096 TTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266021 3 + 26754465 TTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167279 3 - 5137665 TTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882133 3 - 135778131 TTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1983959 3 + 2427316 TTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277525 3 + 1448899 ttt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999626 3 - 190850796 ttt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8162988 3 - 15139346 TTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6946917 3 - 7304997 TTT i cebCap1.NW_016107439v1 I 144 C 0 s micMur3.chrUn_NW_017968520v1 1771131 3 + 3286835 TTT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1859862 3 + 4188776 TTT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8597513 3 + 8790067 TTT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47971592 3 + 63241923 TTT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4085166 3 - 5279953 ttc i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e aotNan1.NW_018493494v1 9364816 144 - 11631747 I a score=368692.000000 s hg38.chr4_KI270787v1_alt 43429 24 + 111943 ATTCATAC--AAAACACTCATTGAGA-- s panTro5.chr4 119608464 24 - 194502333 ATTCATAC--AAAACACTCATTGAGA-- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021882 24 - 195804263 ATTCATAC--AAAACACTCATTGAGA-- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453167 24 - 17550833 attcatac--aaaacactcattgaga-- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326140 24 - 118206036 ATTCATAC--AAAACACTCATTGAGA-- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529826 24 - 190429646 ATTCATAC--AAAACACTCATTGAGA-- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110697964 24 - 189454096 ATTCATAC--AAAACACTCATTGAGA-- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266024 24 + 26754465 ATTCATAC--AAAACACTCATTGAGA-- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167282 24 - 5137665 ATTCATAC--AAAACACTCATTGAGA-- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882136 24 - 135778131 ATTCATAC--AAAACACTCATTGAGA-- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1983962 24 + 2427316 ATTCATAC--AAAACACTCATTGAGA-- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277528 24 + 1448899 attcatac--aaaacactcattgaga-- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999629 24 - 190850796 attcatac--aaaacactcattgaga-- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8162991 24 - 15139346 ATTCATAC--AAAACACTCATTGAGA-- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6946920 24 - 7304997 ATTCATAC--AAAACACTCATTGAGA-- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9364960 24 - 11631747 ATTCATAC--AAAACACTCATTGAGA-- i aotNan1.NW_018493494v1 I 144 C 0 s micMur3.chrUn_NW_017968520v1 1771134 24 + 3286835 ATTGATGG--AAAACACTCATTGAGA-- i micMur3.chrUn_NW_017968520v1 C 0 I 64 s proCoq1.NW_012140747v1 1859865 24 + 4188776 ATTCATGC--AAAATACTCATTGAGA-- i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8597516 24 + 8790067 ATTCATGC--AGAGCTTTCATTCAGA-- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47971595 19 + 63241923 GTTCATAT--AAAA-----ATTATGG-- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4085169 28 - 5279953 atttatatggaaaatacttattgaacca i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I a score=240723.000000 s hg38.chr4_KI270787v1_alt 43453 22 + 111943 TTATTACGCACTAGGCCTAAGA- s panTro5.chr4 119608488 22 - 194502333 TTATTACGCACTAGGCCTAAGA- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021906 22 - 195804263 TTATTACGCACTAGGCCTAAGA- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453191 22 - 17550833 ttattatgcactaggcctaaga- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326164 22 - 118206036 CTATTACGCACTAGGCCTAAGA- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529850 22 - 190429646 CTGTTATGCACTAGGCCTCAGA- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110697988 22 - 189454096 CTGTTATGCACTAGGCCTCAGA- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266048 22 + 26754465 CTGTTATGCACTAGGCCTCAGA- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167306 22 - 5137665 CTATTACGCACTAGGCCTTAGA- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882160 22 - 135778131 CTATTACGCACTAGGCCTTAGA- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1983986 22 + 2427316 CTATTACGCACTAGGCCTTAGA- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277552 22 + 1448899 ctattacgcactaggcttcaga- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999653 22 - 190850796 ctattatgcactaggtctaaga- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163015 22 - 15139346 CAATTACGCACTAGGTCTAAGA- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6946944 22 - 7304997 CTGTTACGCACTAGGTCTAAGA- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9364984 22 - 11631747 CTATTACGCACTAGGTCTAAGA- i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1859889 21 + 4188776 CTATTATGCACA-GGGTTAAGA- i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8597540 19 + 8790067 CTATTATACacc---cctgaga- i otoGar3.GL873602 C 0 I 703 s canFam3.chr13 47971614 22 + 63241923 CTATTGTGTGTTAGGGTAAAGA- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4085197 23 - 5279953 ttgtgaagtatcagagctgagga i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1771158 64 + 3286835 I e mm10.chr5 76405135 120 + 151834684 I a score=397217.000000 s hg38.chr4_KI270787v1_alt 43475 34 + 111943 TAAAATGAGCAAGGCAGAGACAGTC-----CCTCACTGT s panTro5.chr4 119608510 34 - 194502333 TAAAATGAGCAAGGCAGAGACAGTC-----CCTCACTGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021928 34 - 195804263 TAAAATGAGCAAGGCAGAGACAGTC-----CCTCACTGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453213 34 - 17550833 taaaatgagcaaggcagagacagtc-----cctCACTGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326186 34 - 118206036 TAACATGAGCAACGCAGAGACAGTC-----CCTCACTGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529872 34 - 190429646 TAAAATGAGCAAGGTAGAGACAGTC-----TCTCACTGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110698010 34 - 189454096 TAAAATGAGCAAGGTAGAGACAGTC-----CCTCACTGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266070 34 + 26754465 TAAAATGAGCAAGGTAGAGACAGTC-----CCTCACTGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167328 34 - 5137665 TAAAATGAGCAAGGTAGAGACAGTC-----CCTCACCGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882182 32 - 135778131 TAAAACGAGAGAAGTAGAGAGAG-------CTTCACTGT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1984008 34 + 2427316 TAAAATGAGCAAGGTAGAGACAGTC-----CCTCACTGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277574 34 + 1448899 taaaatgagcgaggtagagacagtc-----cctCACTGT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999675 34 - 190850796 taaaatgagcgaggcagagacagtc-----cctCACTGT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163037 34 - 15139346 TAAATTGAGCGAGGCAGAGACAGTC-----CCTCACTGT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6946966 34 - 7304997 AAAAATGAGCGAGCCAGAGACAGTC-----CTTCACTGT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9365006 34 - 11631747 TAAAATGAGCGAGGCAGAGACAGCC-----CCTCACTGT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1859910 27 + 4188776 TAAAGTG-------CAGAGACAGTC-----TCTCTCTCT i proCoq1.NW_012140747v1 C 0 I 22 s canFam3.chr13 47971636 34 + 63241923 TAAAATGAGCAAGACAGAGATAATC-----TCTAATTGT i canFam3.chr13 C 0 I 2 s dasNov3.JH568349 4085220 39 - 5279953 gagaatgaacaaagcaggcacagtcgacgacttcatggt i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1771158 64 + 3286835 I e mm10.chr5 76405135 120 + 151834684 I e otoGar3.GL873602 8597559 703 + 8790067 I a score=85437.000000 s hg38.chr4_KI270787v1_alt 43509 9 + 111943 GAAGTGTAC s panTro5.chr4 119608544 9 - 194502333 GAAGTGTAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021962 9 - 195804263 GAAGTGTAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453247 9 - 17550833 GAAGTGTAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326220 9 - 118206036 GAAGTGTAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529906 9 - 190429646 GAAGTGTAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110698044 9 - 189454096 GAAGTGTAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266104 9 + 26754465 GAAGTGTAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167362 9 - 5137665 GAAGTGTAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882214 9 - 135778131 GAAGTGTAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1984042 9 + 2427316 GAAGTGTAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277608 9 + 1448899 GAAGTGTAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999709 9 - 190850796 GGAGTATAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163071 9 - 15139346 GGAGTGGAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6947000 9 - 7304997 GGAGTGTAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9365040 9 - 11631747 GGAGTGTAT i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47971672 9 + 63241923 AGAGttttt i canFam3.chr13 I 2 I 8 s dasNov3.JH568349 4085259 8 - 5279953 gtttTGTA- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1859937 22 + 4188776 I e micMur3.chrUn_NW_017968520v1 1771158 64 + 3286835 I e mm10.chr5 76405135 120 + 151834684 I e otoGar3.GL873602 8597559 703 + 8790067 I a score=104488.000000 s hg38.chr4_KI270787v1_alt 43518 7 + 111943 GTattta s panTro5.chr4 119608553 7 - 194502333 GTattta i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021971 7 - 195804263 GTattta i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453256 7 - 17550833 GTattta i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326229 7 - 118206036 GTattta i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529915 7 - 190429646 GTattta i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110698053 7 - 189454096 GTattta i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266113 7 + 26754465 GTattta i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167371 7 - 5137665 GTattta i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882223 7 - 135778131 GTATTTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1984051 7 + 2427316 GTattta i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277617 7 + 1448899 GTattta i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999718 7 - 190850796 GTATTTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163080 7 - 15139346 GTattta i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6947009 7 - 7304997 GTATTTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9365049 7 - 11631747 GTATTTA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1771222 7 + 3286835 GTattta i micMur3.chrUn_NW_017968520v1 I 64 C 0 s canFam3.chr13 47971689 7 + 63241923 ttattta i canFam3.chr13 I 8 I 196 s dasNov3.JH568349 4085267 6 - 5279953 -Tattta i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1859937 22 + 4188776 I e mm10.chr5 76405135 120 + 151834684 I e otoGar3.GL873602 8597559 703 + 8790067 I a score=30303.000000 s hg38.chr4_KI270787v1_alt 43525 2 + 111943 tc s panTro5.chr4 119608560 2 - 194502333 tc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021978 2 - 195804263 tc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453263 2 - 17550833 tc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326236 2 - 118206036 tc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529922 2 - 190429646 tc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110698060 2 - 189454096 tc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266120 2 + 26754465 tc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167378 2 - 5137665 tc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882230 2 - 135778131 TC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1984058 2 + 2427316 tc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277624 2 + 1448899 tc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999725 2 - 190850796 TC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163087 2 - 15139346 tc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6947016 2 - 7304997 TC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9365056 2 - 11631747 TC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1771229 2 + 3286835 tc i micMur3.chrUn_NW_017968520v1 C 0 C 0 s canFam3.chr13 47971892 2 + 63241923 TC i canFam3.chr13 I 196 C 0 s dasNov3.JH568349 4085273 2 - 5279953 tt i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1859937 22 + 4188776 I e mm10.chr5 76405135 120 + 151834684 I e otoGar3.GL873602 8597559 703 + 8790067 I a score=1756406.000000 s hg38.chr4_KI270787v1_alt 43527 147 + 111943 cactcacaagtacttcttgagcatcttctatgtgccaacattgtAGAT--TTGG----GGTGGAGAG--GGT-----------CATAGCCCATAGTG-CTAGCCTTGAAAAGGAACAATATATTCTATTTGTGCTCCACCTGGAGATATTGAGGAAACACACTACTT s panTro5.chr4 119608562 147 - 194502333 cactcacaagtacttcttgagcatcttctatgtgccaacattgtagat--ttgg----ggtggagag--ggt-----------catagcccatagtg-ctagccttgaaaaggaacaatatattctatttgtgctccacctggagatattgaggaaacacactactt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121021980 147 - 195804263 cactcacaagtacttcttgagcatcttctatgtgccaacattgtagat--ttgg----ggtggagag--ggt-----------catagcccatagtg-ctagccttgaaaaggaacaatatattctatttgtgctccacctggagatattgaggaaacacactactt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453265 147 - 17550833 cactcacaagtacttcttgagcatcttctatgtgccaatattgtagat--ttgg----ggTGGAGAG--GGT-----------CATAGCCCATAGTG-CTAGCCTTGAAAAGGAACAATATATTCTATTTGTGCTCCACCTGGAGATATTGAGGAAACACACTACTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326238 147 - 118206036 cactcacaagtacttcttgagcatcttctatgtgccaacattgtAGAT--TTGG----GGTGGAGAG--GGT-----------CATAGCCCATAGTG-CTACTCTTGAAAAGGAACAATATATTCTATTTGTGCTCTACCTGGAGATATTGAGGAAACACACTACTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111529924 141 - 190429646 cactcacaggtacttcttgagcatcttctatgtgccaacattgtagtt--ttgg----ggtggagaG--GGT-----------CATAGCCCACAGT-------CTTGGAAAGGAACAATATATTCTATTTATGCTCTACCTGAAGATATTGAGGAAACACACTGCTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110698062 141 - 189454096 cactcacaggtacttcttgagcatcttctatgtgccaacattgtagtt--ttgg----ggtggagaG--GGT-----------CATAGCCCACAGT-------CTTGGAAAGGAACAATATATTCTATTTATGCTCTACCTGAAGATATTGAGGAAACACACTGCTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266122 141 + 26754465 cactcacaggtacttcttgagcatcttctatgtgccaacattgtagtt--ttgg----ggtggagaG--GGT-----------CATAGCCCACAGT-------CTTGGAAAGGAACAATATATTTTATTTATGCTCTACCTGAAGATATTGAGGAAACACACTGCTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167380 141 - 5137665 cactcacaggtacctcttgagcatcttctatgtgccaacattgtagtt--ttgg----ggtggagaG--GGT-----------CATAGCCCATAGT-------CTTGAAAAGGAACAATATATTCTATTTGTGCTCTACCTGAAGATATTGAGGAAACACACTGCTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882232 141 - 135778131 CACTCACAGGTACCTCTTGAGCATCTTCTATGTGCCAACATCGTAGTT--TTGG----GGTGGAGAG--GGT-----------CATAGCCCATAGT-------CTTCAAAAGGAACAATATATTCTATTTGTGCTCTACCTGAAGATATTGAGGAAACACACTGCTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1984060 141 + 2427316 cactcacaggtacctcttgagcatcttctatgtgccaacattgtagtt--ttgg----ggtggagaG--GGT-----------CATAGCCCATAGT-------CTTGAAAAGGAACAATATATTCTATTTGTGCTCTACCTGAAGATATTGAGGAAACACACTGCTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277626 141 + 1448899 cactcacaggtacttcttgagcatcttctatgtgccaacattgtagtt--ttgg----ggtggagaG--GGT-----------CATAGCCCATAGT-------CTTGAAAAGGAACAATATATTCTATTTGTGCTCTACCTGAAGATATTGAGGAAACATAGTGCTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999727 145 - 190850796 CACTCCCAAGTTACTCTTGAGAACCTTCTATGTGCCAGTATTGTAGAT--TTGG----GGTGAAAAG--CGT-----------CATAGCCCATAGTG-CTAGTCTTGAAAAGCAACAATATGTTCTATTTGTGCTCTACTTGGAGATATTGAGG--ACACACTATTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163089 147 - 15139346 cactcccaagttattcttgagcaccttctatgtgccagcattgtAGAT--TTGG----GTTGAAAAG--GGT-----------CATAGCCCACAGTG-CTAGTCTTGAAAAGCAACAATATGTTCTATTTGTGCTCTACTCGGAGATATTGAGGAAACACACTATTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6947018 147 - 7304997 CACTCCCAAGTTATTCCTGAGCACCTTCTATGTGCCAGCATTGTAGAT--TTGG----GGTCAAAAG--GGT-----------CATAGCCCATAGTG-CTAGTCTTGAAAAGCAACAATATGTTCTATTTGTGCTCTACTTGGAGATATTGAGGAAACACACTATTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9365058 147 - 11631747 CACTCCCAGGTTATTCTTGAGCACCGTCTATGTGCCAGCATTGTAGAT--TTGG----GGTGAAAAG--GGT-----------CATAGCCCATAGTG-CTAGTCTTGAAAAGCAACAATACGTTCTATTTGTGCTCTACTTGGAGATACTGAGGAAACACACTATTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1771231 141 + 3286835 tactcacaaataattctggagcatcttctatgtgccaagatc---------tgg----ggcagggag--aga-----------ggtagcccatagtgcctagacttaaaaagcAAAAATATATTCTATATGTGTTCTAGTTGGAGACATTAAGGAAACACACTATTT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1859959 141 + 4188776 CACTCACAAGTAATTCTGGATCATCTTCTATGTGCCAACATC---------TAG----GGTAGGGAG--AGA-----------GGTAGCCCATAGTGCCTAGTCTTGAAAAGCAACAATATATTCTATATGTGCTCTAGTTGGAGACATTGAGGAAACACACTATTT i proCoq1.NW_012140747v1 I 22 I 506 s canFam3.chr13 47971894 143 + 63241923 TACCCCCAAGTAATTTTTGGGCATCTTTTATGTATCCACATTGTAGAT--TTGGTCGTGGTGGGAAAGTGGG-----------GAGAACCCATAATGCCT---ATTGAAAAGCCACAATAAAATCTACCTGTGGT------GTCAAGATTGAGGAAACACCATAA-- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4085275 157 - 5279953 tattcacaagtaattctcgagtatttactaggtgccagtattttagatacttgg----gGGGAATAG--GATAGGAAAAGGAAGGCAACCTATAGTGCCTAG-CCTAAAAACCAGCAACGTATTCTATTTGGGGTCGATATGAAGATA-TGAGGAAACACGTTAT-- i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e otoGar3.GL873602 8597559 703 + 8790067 I a score=17290.000000 s hg38.chr4_KI270787v1_alt 43674 1 + 111943 A s panTro5.chr4 119608709 1 - 194502333 a i panTro5.chr4 C 0 C 0 s panPan2.chr4 121022127 1 - 195804263 a i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453412 1 - 17550833 A i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326385 1 - 118206036 A i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111530065 1 - 190429646 A i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110698203 1 - 189454096 A i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266263 1 + 26754465 A i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167521 1 - 5137665 A i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882373 1 - 135778131 A i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1984201 1 + 2427316 A i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277767 1 + 1448899 A i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999872 1 - 190850796 A i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163236 1 - 15139346 A i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6947165 1 - 7304997 A i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9365205 1 - 11631747 A i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1771372 1 + 3286835 A i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1860606 1 + 4188776 A i proCoq1.NW_012140747v1 I 506 C 0 s canFam3.chr13 47972037 1 + 63241923 A i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4085432 1 - 5279953 A i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e otoGar3.GL873602 8597559 703 + 8790067 I a score=91476.000000 s hg38.chr4_KI270787v1_alt 43675 7 + 111943 AAAAGTT s panTro5.chr4 119608710 7 - 194502333 aaaagtt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121022128 7 - 195804263 aaaagtt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453413 7 - 17550833 AAAAGTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326386 7 - 118206036 AAAAGCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111530066 7 - 190429646 AAAAGTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110698204 7 - 189454096 AAAAGTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266264 7 + 26754465 AAAAGTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167522 7 - 5137665 AAAAGTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882374 7 - 135778131 AAAAGTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1984202 7 + 2427316 AAAAGTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277768 7 + 1448899 AAAAGTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999873 7 - 190850796 AAAAGTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163237 7 - 15139346 AAAAGCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6947166 7 - 7304997 AAAAGTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9365206 7 - 11631747 AAAAGTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1771373 7 + 3286835 AAAAGTA i micMur3.chrUn_NW_017968520v1 C 0 I 356 s proCoq1.NW_012140747v1 1860607 7 + 4188776 AAAAGTA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8598262 6 + 8790067 AAAAGT- i otoGar3.GL873602 I 703 C 0 s canFam3.chr13 47972038 7 + 63241923 AACAATG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4085433 5 - 5279953 AAAAG-- i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I a score=4885290.000000 s hg38.chr4_KI270787v1_alt 43682 338 + 111943 GGGGGAGACCATTACATGATATCATTTAAGCAAATG-TGCAGTGGTATAGGCAGAGTAATTTGAGGTAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCACTTCTGTTTTTATATGTATATTTCCTTTCTCTGAGTGTCTCTGAGGCTCCTCAGCCCCTTCTTGTGGTCTCCCCCTTAATATTCACCATCTATGTCCTCACAGTGAATTCAAGGCCAAATAAC-----TAATTTGATAAACTAATCTCTAGTAAATTGCCATGGAAAATAATTTAGGGTTAGTCTCTTAAATAAAAGAT-ATGAATTTTAACTTCAGCCTTGTAGAGACACCTGGAATA s panTro5.chr4 119608717 338 - 194502333 gggggagaccattacatgatatcatttaagcaaatg-tgcagtggtataggcAGAGTAATTTGAGGTAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCACTTCTGTTTTTATATGTATATTTcctttctctgagtgtctctgaggctcctcagccccttcttgtggtctcccccttgatattcaccatctatgtcctcacagtgaattcaaggccaaataac-----taatttgataaactaatctctagtaaattgccatggaaaataatttagggttagtctcttaaataaaagat-atgaattttaacttcagccttgtagagacaCCTGGAATA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121022135 338 - 195804263 gggggagaccattacatgatatcatttaagcaaatg-tgcagtggtataggcAGAGTAATTTGAGGTAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCACTTCTGTTTTTATATGTATATTTcctttctctgagtgtctctgaggctcctcagccccttcttgtggtctcccccttaatattcaccatctatgtcctcacagtgaattcaaggccaaataac-----taatttgataaactaatctctagtaaattgccatggaaaataatttagggttagtctcttaaataaaagat-atgaattttaacttcagccttgtagagacaCCTGGAATA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453420 338 - 17550833 GGGGGAGACCATTACATGATATCATTTAAGCAAATG-TGCAGTGGTATAGGCAGAGTAATTTGAGGTAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCACTTCTGTTTTTATATGTATATTTcctttctctgagtgtctctgaggctcctcagccccttcttgtggtctcccccttaatattcaccatctatgtcctcacagtgaattcaaggccaaataac-----taatttgataaactaatctctagtaaattgccatggaaaataatttagggttagtctcttaaataaaagat-atgaattttaacttcagccttgtagagacaGCTGGAATA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326393 338 - 118206036 GAGGGAGACCATTACATGATATCATTTAAGCAAATG-TGCAGTGGTATAGGCAGAATAATTTGAGGTAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCGCTTCTGTTTTTATATGTATATTTCCTTTCTCTGAGTGTCTCTGAGGCTCCTCAGCCCCTTCTTGAGGTCTCCCCCTTAATATTCATCATCTATGTCCTCACAGTGAATTCAAGGCCAAATAGC-----TAATTTGATAAACTAATCTCTAGTAAATTGCCATGGAAAATAATTTAGGGTTAGTCTCTTAAATAAAAGAT-ATGAATTTTAACTTCAGCCTTGTAGAGACACCTGGAATA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111530073 324 - 190429646 GGGGGAGACCATTACATGATATCATTTAAGCAAATG-TGCAGTAGTATAGGCAGAATAATTTGAGGCAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCGCTTCTGT-------------TTTcctttctctgagtgtgtctaaagttccccagcgccttcttgaggtctccccc-taatattcatcatccatgtcctcacagtgaattcaaggtcaaataac-----taatttgataaactaatctctactaaattgccatggaaagtaattaagggttagtctcttaaataaaagat-aagaattttaacttcagccttgtagagataCCTGGAATA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110698211 324 - 189454096 GGGGGAGACCATTACATGATATCATTTAAGCAAATG-TGCAGTGGTATAGGCAGAATAATTTGAGGCAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCGCTTCTGT-------------TTTCCTTTCTCTGAGTGTGTCTAAAGTTCCCCAGCGCCTTCTTGAGGTCTCCCCC-TAATATTCATCATCCATGTCCTCACAGTGAATTCAAGGTCAAATAAC-----TAATTTGATAAACTAATCTCTACTAAATTGCCATGGAAAGTAATTAAGGGTTAGTCTCTTAAATAAAAGAT-AAGAATTTTAACTTCAGCCTTGTAGAGATACCTGGAATA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266271 324 + 26754465 GGGGGAGACCATTACATGATATCATTTAAGCAAATG-TGCAGTGGTATAGGCAGAATAATTTGAGGCAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCGCTTCTGT-------------TTTcctttctctgagtgtgtctaaagttccccagcgccttcttgaggtctccccc-taatattcatcatccatgtcctcacagtgaattcaaggtcaaataac-----taatttgataaactaatctctactaaattgccatggaaagtaattaagggttagtctcttaaataaaagat-aagaattttaacttcagccttgtagagataCCTGGAATA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167529 337 - 5137665 GGGGGAGACCATTACATGATATCATTTAAGCAAACG-TGCAGTGGTATAGGCAGAATAATTTGAGGTAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCGCTTCTGTTTTTATAAGTATATTTcctttctctgagtgcatctaaagttccccagccccttcttgaggtcttcccc-taatattcatcatccatgtcctcacagtgaattcaaggccaaataac-----taatttgataaactaatctctactaaattgccatggaaagtaatttagggttagtctcttaaataaaagat-aagaattttaacttcagccttgtagcgataCCTGGAATA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882381 324 - 135778131 GGGGGAGACCATTACATGATATCATTTAAGCAAATG-TGCAGTGGTATAGGCAGAATAATTTGAGGTAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCGCTTCTGT-------------TTTCCTTTCTCTGAGTGTGTCTAAAGTTCCCCAGTGCCTTCTTGAGGTCTCCCCC-TAATATTCATCATCCATGTCCTCACAGTGAATTCAAGGCCAAATAAC-----TAATTTGATAAACTAATCTCTACTAAATTGCCATGGAAAGTAATTTAGGGTTAGTCTCTTAACTAAAAGAT-AAGAATTTTAACTTCAGCCTTGTAGAGATACCTGGAATA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1984209 337 + 2427316 GGGGGAGACCATTACATGATATCATTTAAGCAAACG-TGCAGTGGTATAGGCAGAATAATTTGAGGTAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCGCTTCTGTTTTTATAAGTATATTTcctttctctgagtgcatctaaagttccccagccccttcttgaggtcttcccc-taatattcgtcatccatgtcctcacagtgaattcaaggccaaataac-----taatttgataaactaatctctactaaattgccatggaaagtaatttagggttagtctcttaaataaaagat-aagaattttaacttcagccttgtagcgataCCTGGAATA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1277775 337 + 1448899 GGCGGAGACCATTACATGATATCATTTAAGCAAATG-TGCAGTGGTATAGGCAGAATAATTTGAGGTAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCGCTTCTGTTTTTATAAGTATATTTcctttctctgagtgtgtctaaagttccccagccccttcttgaagtctccccc-taatattcatcatccatgtcctcacagtgaattcaaggccaaataac-----taatttgataaactaatctctactaaattgccatggaaagtaatttagggttagtctcttaaataaaagat-aagaattttaacttcagccttgtagagataCCTGGAATA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 52999880 323 - 190850796 GGGGGAGACCACTGCAGGAAATCATGTAAGCAAATG-TGCAGTGGTACAGGCAGAATAATTTGACGTAGGATTG-TGAAATAGACGACATTTGATTGCAGTGCTCCGCT--TGTTTTTATATGTGTATTTCCTTTCTCTGAATGTCTCTGAGGCTCCCCAGCCCCTTCTTGA------------GACATTTATCATCCATGTCTTCACAGTGAATTCAAGTCCAAATAAC-----TAATTTGATAAACTAATCTCTATTAAACTGCCATGG-AAATAATTTAGGGTTAGTCTTTTAAATAAAAGAT-ATGATTTTTAACTTCAGCCTTGTAGACACACCTGGAATA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163244 338 - 15139346 GGGGGAGACCATTACAGGAAATCATGTAAGCAAATG-TGCAGTGGTATAGGCAGAATAATTTGAGGTAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCGCTTCTGTTTTTATATGTGTATTTCCTTTCTCTGAATGTCTCTGAGGCTCCCCAGGCCCTTCTTGAGGTCTCTCCCTTGATATTTATCATCCATGTCTTCACAGTGAATTCAAGTCCAAATAAC-----TAATTTGATAAACTAATCTCTACTAAACTGCCATGGAAAATAATTTAGGGTTAGTCTCTTAAATAAAAGAT-ATGATTTTTAATTTCAGCCTTGTGGACACACCTGGAATA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6947173 337 - 7304997 GGGGGAGACCATTACAGGAAATCATGTAAGCAAATG-TGCAGTGGTATAGGCAGAATAATTTGAGGTAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCGCTTCTGTTTTTATATGTGTATTTcctttctctgaatgtctctgaggctccccagccccttcttgaggtctccccctcgacatttatcatccatgtcttcacagtgaattcaagtccaaataac-----taatttgataaactaatctctactaaactgccatggaaaataatttagggttagtctcttaaataaaagat-atgatttttaacttcagcc-tgtagacacaCCTGGAATA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9365213 338 - 11631747 GGGGGAGACCATTACAGGAAATCATGTAAGCAAATG-TGCAGTGGTATAGGCAGAATAATTTGACGTAGGATTG-TGAAATAGATGACATTTGATTGCAGTGCTCCGCTTCTGTTTTTATATGTGTATTTcctttctctgaatgtctctgaggctccccagccccttcttgaggtctcccccttgacatttatcatccatgtcttcacagtgaattcaagtccaaataac-----taatttgataaactaatctctactaaactgccatggaaaataatttagggttagtctcttaaataaaagat-atgatttttaacttcagccttgtagacacaCCTGGAATA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1771736 337 + 3286835 GGGGGAGACAACTACAAGATATCATTGAAGCAATTG-CGCAGTGAGGTAGGCAGAGTCATTTGAGATAAGATTA-TTAAATAGCTGAAGTTTGGCTTATGTGTTCTGCTTCTG-TTTTATCTATGTATTTcctctctttgggtgtctctggggcttcctggccccttcctaaagtctctcccttgatattcaccatccagagcttcagagctaatccaaggccaaataac-----taatttgataaactaatctctactaaattgtcatgggaaataatttagagctagtctcttaaataaaagag-atgaactttagcttcggccttgcagagataCCTGGAATA i micMur3.chrUn_NW_017968520v1 I 356 I 366 s proCoq1.NW_012140747v1 1860614 338 + 4188776 GGGGGAGACAACTACAAGATATCATTGAAGCCAATG-TGCAGTGGTGTAGGCAATATCATTTGAGGTAAGATTA-TTAAATAGCTGAAGTTTGACTTGTATGTTCTGCTTCTGTTTTTATCTATGTATTTCCTCTCTTTGGGTGTCTCTGGGGTTCCCTGGCCACTTCGTGAAGTCTCTCCCTTGATATTCACCATCCAGGGcctcagagctaatccaaggccaaataac-----taatttgataaactaatctctactaaattgtcatgggaaataatttagggctagtctcttaaataaaggat-atatattttagcttcagctttgcagagataCCTGGAATA i proCoq1.NW_012140747v1 C 0 I 21 s otoGar3.GL873602 8598268 339 + 8790067 AGGGGAGAAAACTCCAAGATGTCATTGAAGTGAATG-CCCTACAGAGTAGGCAGAATAATTTGAGGTGAGACTA-TTAAATAACTGAAGTTTGACTTGCATGCTCTGCCTCTGTTTCTATAAATGTATTTCCTCTCCTTGGGTGTCTCTGAGGATCTTTGGCCCCTTCCTGAAATCTCTGCCTTGGTCGTCACCATCCAGGGCCTCACAGCAAATCAAAGGATGAACAAC-----TAATTTGATAAACTAATCTTTGCTAAATTGTCGTGGGAAATAATTTAGGGCTTGTCTCTTAAATAAAAGATAATAAATTTTAGCTTTGGTCTTGCTAAGACACCTGAAATA i otoGar3.GL873602 C 0 I 1 s canFam3.chr13 47972045 325 + 63241923 AGAGGACATAACTACAAGATATTATTTAAGTAAATGTTGCAGTGGCATA-GCAGAATAATTTGAAGTAAGATTATTTAAGTAGATAAAGTTTGACTTCAGTGCTCTG-------------ATATGTATTTCCTTTCTGTGAGTGTCCCTGAGGCTCCCC-TCACCTTCCTAAGTTTTCCCTT-TGATAGTCACCACCCACAACCTCAAAGCCAATCCAAGGTCAAATAACCGCAGTAACTTGATAAACTAATTTCTACTAAACTATCATGGGAAATAATTTAGGA-TATTCTCCTAAATAAAAAAT-AAGAATTTTAACTTCAGCCCTGAAGAGACA--TGGAAT- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4085438 325 - 5279953 -GGAGAGACAA---CAAGGTAAAAGAGAGGCAAATG-TGCAGTGGTGTAGGTAGGCTAACCCGAGGCAAGATCT-TCAAG-AGTTGAAGTTTGACTTTGGTGCTCACCTTCTGTTTTTA----TGTATTTCCTTTCTTTGGGTGTCTCTGAGACTTCTCAGTGCCCTCC----GTCTCCCCCTCAATCTCTGCCATCCATGGCCTCTGAGCTAATCCAAGGCCAAATGAC-----AAATCTGATGGACTATTTTCTACTAAAGTATCATGGGAAATAATTCAGGGTTCTTCTTCTAAATTAAAGAT-ACAAAGTTTAATTTCAGTCTTGCAGAGATGGCAGGAAGA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I a score=226119.000000 s hg38.chr4_KI270787v1_alt 44020 21 + 111943 -CAACCATCATGCCTC-ATATTA s panTro5.chr4 119609055 21 - 194502333 -CAACCACCACGCCTC-ATATTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121022473 21 - 195804263 -CAACCACCACGCCTC-ATATTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453758 21 - 17550833 -CAACCATCACGCCTC-ATATTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326731 21 - 118206036 -CAACCATCATGCCTC-ATATTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111530397 21 - 190429646 -CAACCATCACACCTC-ATATTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110698535 21 - 189454096 -CAACCATCACACCTC-ATATTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266595 21 + 26754465 -CAACCATCACACCTC-ATATTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167866 21 - 5137665 -CAACCATCACACCTC-ATATTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882705 21 - 135778131 -CAACCATCACACCTC-ATATTC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1984546 21 + 2427316 -CAACCATCACACCTC-ATATTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278112 21 + 1448899 -CAACCATCACACCTC-ATATTC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53000203 21 - 190850796 -CAACCATCATGCCTC-ATATTC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163582 21 - 15139346 -CAACCATCATGCCTC-ATATTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6947510 21 - 7304997 -CAACCATCATGCCTC-ATTTTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9365551 21 - 11631747 -CCATCATCATGCCTC-ATATTC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8598608 21 + 8790067 -CAATAGCAACACCTC-ATGTTC i otoGar3.GL873602 I 1 C 0 s canFam3.chr13 47972370 21 + 63241923 --AACAACAATGCCTTGGTATTC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4085763 15 - 5279953 ACAACAGTG--------ATATTC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1860952 21 + 4188776 I e micMur3.chrUn_NW_017968520v1 1772073 366 + 3286835 I e mm10.chr5 76405135 120 + 151834684 I a score=1350360.000000 s hg38.chr4_KI270787v1_alt 44041 104 + 111943 TAATTATGCTGTTAATTTATGTGCAAACATCAGTGCAAGGtactatgtgttaagcactaaggtgatgcgtaaaggaataagatgctagctctatctatcagggg s panTro5.chr4 119609076 104 - 194502333 TAATTATGCTGTTAATTTATGTGCAAACATCAGTGCAAGGtactatgtgttaagcactaaggtgatgcataaaggaataagatgctagctctatctatcagggg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121022494 104 - 195804263 TAATTATGCTGTTAATTTATGTGCAAACATCAGTGCAAGGtactatgtgttaagcactaaggtgatgcataaaggaataagatgctagctctatctatcagggg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453779 104 - 17550833 TAATTATGCTGTTAATTTATGTGCAAACATCAGTGCAAGGtactatgtgttaagcactaaggtgatgcgtaaaggaataagatgctagctctatctatcagggg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326752 104 - 118206036 TAATTATGCTGTTAATTTATGTGCAAACATCAGTGCAAGGtactgtgtgttaagcactaaggtgatgtgtaaaggaataagatgctagctctatctatcagggg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111530418 104 - 190429646 TAATTATGCTGTTAATTTATGTGCAAACATCAGTGCAAGGtactatatgttaagcactaaggcgatgtgtaaaggaataagacgctagctctatctatcagtgg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110698556 104 - 189454096 TAATTATGCTGTTAATTTATGTGCAAACATCAGTGCAAGGtactatatgttaagcactaaggcgatgtgtaaaggaataagacgctagctctatctatcagtgg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266616 104 + 26754465 TAATTATGCTGTTAATTTATGTGCAAACATCAGTGCAAGGtactatatgttaagcactaaggcgatgtgtaaaggaataagacgctagctctatctatcagtgg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167887 104 - 5137665 TAATTATGCTGTTAATTTATGTGCAAACATCAGTGCAAGGtactatgtgttaagcactaaggcgatgtgtaaaggaataagacgctagctctatctatcagcgg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882726 104 - 135778131 TAATTATGCTGTTAATTTATGTGCAAACATCAGTGCAAGGtactatgtgttaagcactaaggcgatgtgtaaaggaataagacgctagctctatctatcagcgg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1984567 102 + 2427316 TAATTATGCTGTTAATTTATGTGCAAACATCAgtgcaaggtac--tgtgttaagcactaaggcgatgtgtaaaggaataagacgctagctctatctatcagcgg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278133 104 + 1448899 TAACTATGCTGttaatttatgcacaaacatcagcgcaaggtactatgtgttaagcacgaaggcgatgtgtaaaggaataagacgctagctctatctatgagcag i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53000224 104 - 190850796 TAATTATGCTGTTAATTTACATGCAAGCATTAGTGCAAGGTACTGTGTATTAAGCACTAAGGTGATGTGTAAAGGAGTAAGACGCTAGCTCTGTCTATCAGGGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163603 100 - 15139346 TAATTATGCTGTTAATTTATGTGCAAACATTAGTGCAAGGTACTGTGTATTAAGCACTAAGGTGATGTGTAAAGGAGTAAGACGCTAGCTCTG----TCAGGGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6947531 104 - 7304997 TAATTATGCTGTTAATTTACGTGcaaacattagtgcaaggtactgtgtattaagcactaaggtgatgtgtaaaggagtaagacgctagctctgtctatcagggg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9365572 104 - 11631747 TAAATATGCTGTTAATTTATGTGCAAACATTAGTGCAAGGTACTGTGTATTAAGCACTAAGGTGATGTGTAAAGGAGTAAGATGCTAGCTCTGTCTATTGGGGG i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1860973 104 + 4188776 TGATCGCGCTattaatttatgtacaaacatcagtgcgaggttctgtgtgtcaagcattaatggactatgaagatgaataagatgttaatcctgtctatcagggg i proCoq1.NW_012140747v1 I 21 C 0 s otoGar3.GL873602 8598629 101 + 8790067 TGACTGTGCTATTAATTTACAAGCAAACATCAGTGTTTCTTTC--tgtgtcaagctttaaaggggtatgaagatgaataagacactaaccctgtctacca-ggg i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47972391 97 + 63241923 ---CCATTGTGCTAAACTA--TTCAAACATCAGTGCAAGGCA--GTGTGTCAAGCAGTAAAGGGCTATGAAGATGAGTAAGATGTTAACCACATCCATGAGGGG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4085778 104 - 5279953 TAATTGTGCAATTAATTTATTAGCAAACATCAGTGTGACATAGGGCATATTAAGCACTAAGGGTCTATGGAGACGAATAAGGGATTAATTCTGTCCATAAGAAG i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1772073 366 + 3286835 I e mm10.chr5 76405135 120 + 151834684 I a score=1648773.000000 s hg38.chr4_KI270787v1_alt 44145 142 + 111943 tctcatgagttaacaaggggg-agagatcaatatagagacaactttgatcaaggcagttaatagcatgggcggaata--ggcac-agtgccaagagagg---gctgagCTTTCA-CCGGTGCCAGCTG----TTGTGCACGCCTGAGATTCTGA s panTro5.chr4 119609180 142 - 194502333 tctcatgagttaacaaggggg-aaagatcaatatagagacaactttgatcaaagcagttaatagcatgggcggaata--ggcac-agtgccaagagagg---gctgagCTTTCA-CTGGTGCCAGCTG----TTGTGCACGCCTGAGATTCTGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121022598 142 - 195804263 tctcatgagttaacaaggggg-aaagatcaatatagagacaacgttgatcaaagcagttaatagcatgggcggaata--ggcac-agtgccaagagagg---gctgagCTTTCA-CTGGTGCCAGCTG----TTGTGCACGCCTGAGATTCTGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4453883 142 - 17550833 tctcatgagttaacaaggggg-agagatcaatatagagacaactttgatcaaagcagttaatagcatgggcagaata--ggcac-agtgccaagagagG---GCTGCACTTTCA-CCTGTGCCAGCTG----TTGTGCACGCCTGAGATTCTGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326856 142 - 118206036 tctcatgagttagtaacgcgg-agagatcaatatagagacaactttgaacaaagcagttaatagcatgggcagaatc--ggcac-agtgccaagagagg---gctgagCGTTCA-CCTGTGCCAGCTG----TTGTGCACGCCTGAGATTCTGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111530522 142 - 190429646 tctcatgagttagtaaggggg-agagattaatatagagacaactttgatcaaagcagttaatagcatgggcagaata--gctac-agtgcccagagagg---gcTGAGCGTTCA-CCTGTGCCAGCTG----TTGTGCACACCTGAGATTCTGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110698660 142 - 189454096 tctcatgagttagtaaggggg-agagattaatatagagacaactTTGATCAAAGCAGTTAATAGCATGGGCAGAATA--GCTAC-AGTGCCCAGAGAGG---GCTGAGCGTTCA-CCTGTGCCAGCTG----TTGTGCACACCTGAGATTCTGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266720 142 + 26754465 tctcatgagttagtaaggggg-agagactaatatagagacaactttgatcaaagcagttaatagcatgggcagaata--gctac-agtgcccagagagg---gcTGAGCGTTCA-CCTGTGCCAGCTG----TTGTGCACACCTGAGATTCTGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4167991 142 - 5137665 tctcatgagttagtaaggggg-agagattaatatagagacaactTTGATCAAAGCAGTTAATAGCATGGGCGGAATA--GCTAC-AGTGCCCAGAGAGG---GCTGAGCGTTCA-CCTGTGCCAGCTG----TTGTGCACACCTGAGATTCTGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882830 142 - 135778131 cctcatgagttagtaaggggg-agagattaatatagagacaactTTGATCAAAGCAGTTAATAGCATAGGCGGAATA--GCTAC-AGTGCCCAGAGAGG---GCTGAGCATTCA-CCTGTGCCAGCTG----TTGTGCACACCTGAGATTCTGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1984669 142 + 2427316 tctcatgagttagtaaggggg-aGAGATTAATATAGAGACAACTTTGATCAAAGCAGTTAATAGCATGGGCGGAATA--GCTAC-AGTGCCCAGAGAGG---GCTGAGCGTTCA-CCTGTGCCAGCTG----TTGTGCACACCTGAGATTCTGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278237 142 + 1448899 tctcatgagttagaaaggggg-agagattaatatagagacaactTTGATCAAAGCAGTTAATAGCATGGGCGGAATA--GCTAC-AGTGCCCAGAGAGG---GCTGAGCATTCA-CCTGTGCCAGCTG----TTGTACACACCTGAGATTCTGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53000328 141 - 190850796 TCTCATC----AGTAAGGAGG-AGAGATCAATATAGAAGCAACTTTGTTCAAAGCAGTTAATAGCATGAGTGGAATA--GGCAC-AGTACCAAGAGAGG---GCTGAGCGTTCA-CCTGTGCCAGCTGTCA-TCGTGTACTCCTGAGGTTCTGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163703 145 - 15139346 TCTCATCAGTTAGTGAGGGGC-AGAGATCAATACAGAGGCAACTTTGTTCAAAGCAGTTAATAGCATGGGTGGAATA--GGCAC-AGTGCCAAGAGAGG---GCTGAGCGTTCA-CCTGTGCCAGCTGTCA-TTGTGCATGCCTGAGGTTCTGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6947635 145 - 7304997 tctcatcagttagtaaggggg-agagatcagtatagaagcaactttgttcaaagcagttaatagcatgggtggaata--ggcac-agtgccaagagagg---gctgagcgttca-cctgtaccagCTGTCA-TTGTGCACACCCGAGGTTCTGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9365676 145 - 11631747 -CTCATCAGTTAGTAAGGGGGAAGAGATCAATATAGAAGCAACTTTGTTCAAAGCAGTTAATAGCATGGGTGGAATA--GGCAC-AGTGCCAAGAGAGG---GCTGAGTGTTCA-CCTGTGCAAGCTGTCA-TTGTGCACACCCGAGGTTCTGA i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1861077 137 + 4188776 ccttatcagctagtaaggggg---------atacagaAGCAACTTTGATCAAAGCAGTGAATGCCAGGGGTGGGATG--GGCAC-AGTGCCAGGAGAGG---GCCCAGGGCTCA-CCCATGCCAGCTGTCA-CTGTGCACTCCCGAGGTTCTGA i proCoq1.NW_012140747v1 C 0 I 80 s otoGar3.GL873602 8598730 136 + 8790067 ccttatcagctaataaaaggg---------atacagaagtaaCTTTGATCAAAGCAGTGAGTACCAGGATCGGAATG--GGCAT-GGTGCCAAGAAAGA---GCTGAGTGCTCA--CCATGCCAGCTGCCA-CTGTGCACTCCTGAGGTTCTCA i otoGar3.GL873602 C 0 I 2 s dasNov3.JH568349 4085882 148 - 5279953 -CCTACCAGCTAGTAAAAGAG-AGAACT--ATCCACAAGCAGCTTTGACTAAAATAGGGAATAG--TGGGTGGCATCATGGCACAAGTGCCAAGGGAGGACAGCTGAGCACTCAGTCCACAGCGGCCACTATTCATGCACTTCCAAAGTCCTGG i dasNov3.JH568349 C 0 I 8 e micMur3.chrUn_NW_017968520v1 1772073 366 + 3286835 I e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=776942.000000 s hg38.chr4_KI270787v1_alt 44287 75 + 111943 CGCTTGATGTTAATGGGCGTTTGTAGCTAAACCTGTTGTCACATTTCTCTAATGAAACCAAG----------CCCTA--GGCAGGGA s panTro5.chr4 119609322 75 - 194502333 CGCTTGATGTTAATGGGCGTTTGTAGCTAAACCTGTTGTCACATTTCTCTAATGAAACCAAG----------CCCTA--GGCAGGGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121022740 75 - 195804263 CGCTTGATGTTAATGGGCGTTTGTAGCTAAACCTGTTGTCACATTTCTCTAATGAAACCAAG----------CCCTA--GGCAGGGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454025 75 - 17550833 CGCTTGATGTTAATGGGCGTTTGTAGCTAAACCTGTTGTCACATTTCTCTAATGAAACCAAG----------CCCTA--GGCAGGGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69326998 75 - 118206036 TGCTTGATGTTAATGGGTGTTTGTAGCTAAACCTGTTGTCACATGTCTCTAATGAAACCAAG----------CCCTA--GGCAGGGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111530664 75 - 190429646 CGCTTGATGTTAATGGGTGTTTGTAGCTAAACCTGTTGTCACATTTCACTAATGAAACCAAG----------CCCTA--GGCAGGGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110698802 75 - 189454096 CGCTTGATGTTAATGGGTGTTTGTAGCTAAACCTGTTGTCACATTTCGCTAATGAAACCAAG----------CCCTA--GGCAGGGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266862 75 + 26754465 CGCTTGATGTTAATGGGTGTTTGTAGCTAAACCTGTTGTCACATTTCGCTAATGAAACCAAG----------CCCTA--GGCAGGGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168133 74 - 5137665 CGCTTGACGTTAATGGGTGTTTGTAGCTAAACCTGTTGTCACATTTCGCTAATGAAACCAAG----------CCCTA--GGCAGGG- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122882972 75 - 135778131 CGCTTGATGTTAATGGGTGTTTGTAGCTAAACCTGTTGTCACATTTCGCTAATGAAACCAAG----------CCCTA--GGCAGGGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1984811 75 + 2427316 CGCTTGATGTTAATGGGTGTTTGTAGCTAAACCTGTTGTCACATTTCGCTAATGAAACCAAG----------CCCTA--GGCAGGGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278379 75 + 1448899 CACTTGATGTTAATGGGTGTTTGTAGCTAAACCTGTCGTCACATTTCGCTAATGAAACCAAG----------CCCTA--GGCAGAGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53000469 75 - 190850796 TGCTTGATCTTAATGGGTGTTTGTAGCTAAACCTGTTGTCATATTTCTCTAAGGAAACCAAG----------CCCTA--GGCAGGCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163848 75 - 15139346 TGCTTGATCTTAATGGCTCTTTGCAGCTAAATCTGTTGTTACATTTCTCTAATGAAACCAAG----------CCCTA--GGCAGGCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6947780 75 - 7304997 TGCTTGATCTTAATGGGTGTTTGTAGCTAAACCTGTTGTCACATTTCTCTAATGAAACCAAG----------TCCTA--GGCAGGCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9365821 75 - 11631747 TGCTTGATCTTAATGGGTGTTTGTAGCTAAACCTGTTGTCACATTTCTCTAATGAACCCAAG----------CCCTA--GGCAGGCA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8598868 30 + 8790067 TGCTTGATGTTGATGAGTCCT------------------------------------CCGAG----------ATCT----------- i otoGar3.GL873602 I 2 C 0 s dasNov3.JH568349 4086038 84 - 5279953 TGCTCCATGTCAATAGGTCCTTGTAACAAAAACTGCTACCAAACTCCCTTAATGAAACCCAGCTTAGATTTTCCCTAGTGGCAA--- i dasNov3.JH568349 I 8 C 0 e proCoq1.NW_012140747v1 1861214 80 + 4188776 I e micMur3.chrUn_NW_017968520v1 1772073 366 + 3286835 I e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=330018.000000 s hg38.chr4_KI270787v1_alt 44362 29 + 111943 AGTGGAGAAGTGAGGGGTGACCCCAGTA-T s panTro5.chr4 119609397 29 - 194502333 AGTGGAGAAGTGAGGGGTGACCCCAGTA-T i panTro5.chr4 C 0 C 0 s panPan2.chr4 121022815 29 - 195804263 AGTGGAGAAGTGAGGGGTGACCCCAGTA-T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454100 29 - 17550833 AGTGGAGAAGTGAGGGGTGACCCCAGTA-T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327073 29 - 118206036 AGTGGAGAAGTGAGGGGTGACCCCAGTA-T i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111530739 29 - 190429646 AACGGAGAAATGAGGGGTGACCCCAGTA-T i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110698877 29 - 189454096 AACGGAGAAATGAGGGGTGACCCCAGTA-T i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266937 29 + 26754465 AACGGAGAAATGAGGGGTGACCCCACTA-T i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168207 29 - 5137665 AGCGGAGAAATGAGGGGTGACCCCAGTA-T i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883047 29 - 135778131 AGCGGAGAAATGAGGGGTGACCCCAGTA-T i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1984886 29 + 2427316 AGCGGAGAAATGAGGGGTGACCCCAGTA-T i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278454 29 + 1448899 AGCAGAGAAATGAGGGGTGACCCCAGTA-T i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53000544 30 - 190850796 AGTGGAGAAGTGAAGGGTGACCCCAATACT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163923 30 - 15139346 AGTGGAGAAGTGAAGGGTGACCCCAGTACT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6947855 30 - 7304997 AGTGGAGAAGTGAAGGGTGACCCCAGTACT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9365896 30 - 11631747 AGTGGAAAAGTGAAGGGTGACCCCAGTACT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1861294 24 + 4188776 AGTGGAGAA-----GGGGGACCCTAGCA-C i proCoq1.NW_012140747v1 I 80 I 1 s otoGar3.GL873602 8598898 24 + 8790067 AGTGGAGAA-----GGGTGACCTTAGCA-G i otoGar3.GL873602 C 0 I 1 s dasNov3.JH568349 4086122 27 - 5279953 GGTGGAGGA--GAAGAGTGGCCCCAGCA-T i dasNov3.JH568349 C 0 I 1 e micMur3.chrUn_NW_017968520v1 1772073 366 + 3286835 I e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=2391911.000000 s hg38.chr4_KI270787v1_alt 44391 157 + 111943 AACAGAGGAGCAG-GGC-----AATTAGTGAGCTCCCCATGGGAAAGAT-AAC-CTCTAGAAAGAGAAGGCAGGGCTCTGAGGTCCAGCCATTCCCATCCAC-ATGAAGAATCTCTGTTCTTTCATTAGCTTGGAAGGTCCAGGTCCAATTTTTCCAAAGAGTTAG s panTro5.chr4 119609426 157 - 194502333 AACAGAGGAGCAG-GGC-----AATTAGTGAGCTCCCCATGGGAAAGAT-AAC-CTCTAGAAAGAGAAGGCAGGGCTCTGAGGTCCAGCCATTCCCATCCAC-ATGAAGAATCTCTGTTCTTTCATTAGCTTGGAAGGTCCAGGTCCAATTTTTCCAAAGAGTTAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121022844 157 - 195804263 AACAGAGGAGCAG-GGC-----AATTAGTGAGCTCCCCATGGGAAAGAT-AAC-CTCTAGAAAGAGAAGGCAGGGCTCTGAGGTCCAGCCATTCCCATCCAC-ATGAAGAATCTCTGTTCTTTCATTAGCTTGGAAGGTCCAGGTCCAATTTTTCCAAAGAGTTAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454129 155 - 17550833 AACAGAGGAGCAG-GGC-----AATTAGTGAGCTCCCCATGGGAAAGAT-AAC-CTCTAGAAAAAGAAGGCAGGGCTCTGAGGTCCAGCCATTCCCATCCAC-ATGAAGAATCTCTGTTCTTTCATTAGCTTGGAAGGTCCAGGTCCAATTTTTCC--AGAGTTAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327102 157 - 118206036 AACAGAGGAGCAG-GGC-----AATTAGTGAGCTCCCCAAGGGAAAGAT-AAC-CTCTAGAAAGAGAAGGCAGGGCTCTGAGGTCCAGCCATTCCCATCCAC-ATGAAGAATCTCTCTTCTTTCATTAGCTTGGAGGGTCCAGGTCCAATTTTTCCAAAGAGTTGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111530768 157 - 190429646 AACAGAGAAGCAG-GGC-----AATTAGTGAGCTCCCCAAGGGAAAGAT-AAC-CTCTAGAAAGAGAAGGCAGGGCTCTGAGGTCCAGCCATTCCCATCCAC-ATGAAGAATCTCTCTTCTTTCATTAGCTTGGAGGGTCCAGGTCCAATTTTTCCAAAGAGTCAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110698906 157 - 189454096 AACAGAGAAGCAG-GGC-----AATTAGTGAGCTCCCCAAGGGAAAGAT-AAC-CTCTAGAAAGAGAAGGCAGGGCTCTGAGGTCCAGCCATTCCCATCCAC-ATGAAGAATCTCTCTTCTTTCATTAGCTTGGAGGGTCCAGGTCCAATTTTTCCAAAGAGTCAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13266966 157 + 26754465 AACAGAGAAGCAG-GGC-----AATTAGTGAGCTCCCCAAGGGAAAGAT-AAC-CTCTAGAAAGAGAAGGCAGGGCTCTGAGGTCCAGCCATTCCCATCCAC-ATGAAGAATCTCTCTTCTTTCATTAGCTTGGAGGGTCCAGGTCCAATTTTTCCAAAGAGTCAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168236 157 - 5137665 AACAGAGAAGCAG-GGC-----AATTAGTGAGCTCCCCAAGGGAAAGAT-AAC-CTCTAGAAAGAGAAGGCAGGGCTCTGAGGTCCAGCCATTCCCATCCAC-ATGAAGAATCTCTCTTCTTTCATTAGCTTGGAGGGTCCAGGTCCAATTTTTCCAAAGAGTCAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883076 157 - 135778131 AACAGAGAAGCAG-GGC-----AATTAGTGAGCTCCCCAAGGGAAAGAT-AAC-CTCTAGAAAGAGAAGGCAGGGCTCTGAGGTCCAGCCATTCCCATCCAC-ATGAAGAATCTCTCTTCTTTCATTAGCTTGGAGGGTCCAGGTCCAATTTTTCCAAAGAGTCAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1984915 157 + 2427316 AACAGAGAAGCAG-GGC-----AGTTAGTGAGCTCCCCAAGGGAAAGAT-AAC-CTCTGGAAAGAGAAGGCAGGGCTCTGAGGTCCAGCCATTCCCATCCAC-ATGAAGAATCTCTCTTCTTTCATTAGCTTGGAGGGTCCAGGTCCAATTTTTCCAAAGAGTCAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278483 157 + 1448899 AACAGAGAAGCAG-GGC-----AATTGGTGAGCTCCCCAAGGAAAAGAT-AAC-CTCTAGAAAGAGAAGGCAGGGCTCTGAGGTCCAGCTATTCCCATCCAC-AAGAAGAATCTCTCTTCTTTCATTAGCTTGGAGGGTCCAGGTCCAATTTTTCCAAAGAGTCAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53000574 157 - 190850796 AACAGAGAAGCAG-GGC-----AATTAGCGAGGTCCCCAAGGGAAAGAT-AAC-TTCTAGAAAGAGAAGGCAGGGCTCTGAGGTCCAGCCATTCCCATTCAC-ATGAAGAATCTCTCTTCTTTCATTAGCTTGGAGGGTCTAGGTCCAATTTTTCCAAAGAGTTAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8163953 157 - 15139346 AACAGAGAAGCAG-GGC-----AATTAGTGAGATCCCCAAGGGAAAGAT-AAC-TTCTAGAAAGAGAAGGCAGGGCTCTGAGGTCCAGCCATTCCCATTCAC-ATGAAGAATCTCTCTTCCTTCATTAGCTTGGAAGGTCTAGGTCCAATTTTTCCAAAGAGTTAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6947885 155 - 7304997 AACAGAGAAGCAG-GGC-----AATTAGTGAGATCCTTAAGGGAAAGAT-AAC-TTCTAGAAAGAGAAGGAAGGGCTCTGAGGTCCAGCCATTTCCATTCAC-ATGAAGAATCTCTCATCTTTCATTAGCTTGGAAGGTCTAGGTCCAATTTTTCC--AGAGTTAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9365926 156 - 11631747 AACAGAGAAGCAG-GGC-----AATTAGTGAGATCCCCAAGGGAAAGAT-AAC-TTCTAGAAAGAGAAGGCAGGGCTCTGAGGTCCAGCCATTCCCATTCAC-ATGAAGAATCTCTCTTCTTTCATTAGCTTGGA-GGTCTAGGTCCAATTTTTCCAAAGAGTTAG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1772439 157 + 3286835 AACAGAGGAGCAG-GGC-----AATTAGTGAGGTCCCCAAGGGAAAGATAAAT-CTCTAGAAAGAGAAGGCAGGGCTCTGAGGTGCAGCCAT-CCCAGCCAC-ATGAAGAATCTCTCTTCTTTCATTACCTTGAAGGGTCTAGGTTCAATGTTTCCAAAGAGTTGG i micMur3.chrUn_NW_017968520v1 I 366 I 26 s proCoq1.NW_012140747v1 1861319 158 + 4188776 AACAGAGGAGCAG-GGC-----AATTAGTGAGGTCCCCAAGGGAAAGATAAAT-CTCTAGAAAGAGAAGGCAGGGCTCTGAGGTGTAGCCATCCCCAAACAC-ATGAAGAATCTCTCTTCTTTCATTACCTTGAAGGGTCTAGGTTCAATTTTTCCAAAGAGTTGG i proCoq1.NW_012140747v1 I 1 I 2 s otoGar3.GL873602 8598923 159 + 8790067 AACAGAGGAGCAG-GAC-----AATTAGTGAGGTCCCCAAGGGAAAGCTAAAT-CGCTAGAAAGAGAAGGCAGGCCTCTGAGGTCCAGCCATCCCCAGCTATAATGAAGAATCTCTTTTCTTTCGTTACCTTGAAGGGCCTAGGTTCAATTTTTCAAAGGAGTTGA i otoGar3.GL873602 I 1 I 2 s dasNov3.JH568349 4086150 163 - 5279953 GACAAAAGGGCAGTGGCAATAAAATTAGTGAGATCCCCAAGGAAAAGGT-GACTCCCTAAAAAGAGGAGGCAGGGCTTTGTGGTCCAGCCACCCCTGTGCAC-AGGAAGAGTCTCTTTTCCTTCATTACCATGGGAGATCTAGATCTGATTTTTC-AATGAGCTGG i dasNov3.JH568349 I 1 C 0 e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=239708.000000 s hg38.chr4_KI270787v1_alt 44548 25 + 111943 CT----TTTTCTTAAATTCATACATAGCT s panTro5.chr4 119609583 25 - 194502333 CT----TTTTCTTAAATTCATACATAGCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023001 25 - 195804263 CT----TTTTCTTAAATTCATACATAGCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454284 25 - 17550833 CT----TTTTCTTAAATTCATACATAGCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327259 24 - 118206036 C-----TTTTCTTAAATTCATACGTAGCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111530925 24 - 190429646 C-----TTTTCTTAAATTCATACATAGCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699063 24 - 189454096 C-----TTTTCTTAAATTCATACATAGCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267123 24 + 26754465 C-----TTTTCTTAAATTCATACATAGCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168393 24 - 5137665 C-----TTTTCTTAAATTCATACATAGCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883233 24 - 135778131 C-----TTTTCTTAAATTCATACATAGCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985072 24 + 2427316 C-----TTTTCTTAAATTCATACATAGCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278640 24 + 1448899 A-----TTTTCTTAAATTCGTACATAGGT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53000731 24 - 190850796 C-----TTTTCTTAAATTCATACATACGT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164110 24 - 15139346 C-----TTTTCTTAAATTCATACATGCCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948040 24 - 7304997 C-----TTTTCTTAAATCCATGCATACCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366082 24 - 11631747 C-----TTTTCTTAAATTCATACATACCT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1861479 24 + 4188776 -GA---TTTCCTTAAACTCATACCTGGC- i proCoq1.NW_012140747v1 I 2 C 0 s otoGar3.GL873602 8599084 25 + 8790067 -GA---TTTCCTTAAATTCATACATAGCC i otoGar3.GL873602 I 2 C 0 s dasNov3.JH568349 4086313 22 - 5279953 --CAGAATTCCCCAGATTCTTACA----- i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1772596 26 + 3286835 I e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=2228665.000000 s hg38.chr4_KI270787v1_alt 44573 157 + 111943 TTTCAGAGATAGAA-GGGGG-GCTGATGAAAGG-----TTACTGTCCCAGCCTACCGGGTCCAAAG---ACTTTTGAAGGAGTTTTGTCTTTGTGGTTTAACCCAGCAATGATGAATACTGGTAATTCCAGGTCAAGCTGAGGGAAAGATAGTGCCCTG--GCAGGGCA s panTro5.chr4 119609608 157 - 194502333 TTTCAGAGATAGAA-GGGGG-GCTGATGAAAGG-----TTACTGTCCCAGCCTACCGGGTCCAAAG---ACTTTTGAAGGAGTTTTGTCTTTGTGGTTTAACCCAGCAATGATGAATACTGGTAATTCCAGGTCAAGTTGGGGGAAAGATAGTGCCTTG--GCAGGGCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023026 157 - 195804263 TTTCAGAGATAGAA-GGGGG-GCTGATGAAAGG-----TTACTGTCCCAGCCTACCGGGTCCAAAG---ACTTTTGAAGGAGTTTTGTCTTTGTGGTTTAACCCAGCAATGATGAATACTGGTAATTCCAGGTCAAGTTGGGGGAAAGATAGTGCCTTG--GCAGGGCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454309 157 - 17550833 TTTCAGAGATAGAA-GAGGG-GCTGATGAAAGG-----TTACTGTCCCAGCCTACCAGGTCCAAAG---ACTTTTGAAGGAGTTTTGTCTTTGTGGTTTAACCCAGCAATGATGAATACTGGTAATTCCAGGTCAAGTTGGGGGAAAGATAGTGCCTTG--GCAGGGCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327283 158 - 118206036 TTTCAGAGATAGAA-GGGGGCGCTGATGAAAGG-----TTACCGTCCCAGCCTACCAGGTCCAAAG---ACTTTTGAAGGAGTTTTGTCTTTGTGGTTTAACCCAGCAATGATGAATACTGGTAATTCCAGGTCAAGTTGAGGGAAAGATAGTGCCTTG--GCAGGGCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111530949 157 - 190429646 TTTCAGAGATAGAA-GGGGG-GCTGATGAAAGG-----TTACTGTCCCAGCCCACCAGGTCCAAAG---ATTTTTAAAGGAGTTTTGTCTTTGTGGTTTAACCCAGCAATGATGAATACTGGTAATTCCAGGTCAAGTTGGGGGAAAGAGAGTGCTTTG--GCAGGGCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699087 157 - 189454096 TTTCAGAGATAGAA-GGGGG-GCTGATGAAAGG-----TTACTGTCCCAGCCCACCAGGTCCAAAG---ATTTTTAAAGGAGTTTTGTCTTTGTGGTTTAACCCAGCAATGATGAATACTGGTAATTCCAGGTCAAGTTGGGGGAAAGAGAGTGCTTTG--GCAGGGCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267147 157 + 26754465 TTTCAGAGATAGAA-GGGGG-GCTGATGAAAGG-----TTACTGTCCCAGCCCACCAGGTCCAAAG---ATTTTTAAAGGAATTTTGTCTTTGTGGTTTAACCCAGCAATGATGAATACTGGTAATTCCAGGTCAAGTTGGGGGAAAGAGAGTGCTTTG--GCAGGGCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168417 157 - 5137665 TTTCAGAGATAGAA-GGGGG-GCTGATGAAAGG-----TTACTGTCCCAGCCCACCAGGTCCAAAG---ATTTTTAAAGGAGTTTTGTCTTTGTGGTTTAACCCAGCAATGATGAGTACTGGTAATTCCAGGTCAAGTTGGGGGAAAGAGAGTGCTTTG--GCAGGGCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883257 157 - 135778131 TTTCAGAGATAGAA-GGGGG-GCTGATGAAAGG-----TTACTGTCCCAGCCCACCAGGTCCAGAG---ATTTTTAAAGGAGTTTTGTCTTTGTGGTTTAACCCAGCAGTGATGAATACTGGTAATTCCAGGTCAAGTTGGGGGAAAGAGAGTGCTTTG--GCAGGGCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985096 157 + 2427316 TTTCAGAGATAGAA-GGGGG-GCTGATGAAAGG-----TTACTGTCCCAGCCCACCAGGTCCAAAG---ATTTTTAAAGGAGTTTTGTCTTTGTGGTTTAACCCAGCAATGATGAGTACTGGTAATTCCAGGTCAAGTTGGGGGAAAGAGAGTGCTTTG--GCAGGGCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278664 158 + 1448899 TTTCAGAGATAGAAGGGGGG-GCTGATGAAAGG-----TTACTGTCCCAGCCTACCAGGTCCAAAG---ATTTTTGAAGGAGTTTTGTCTTTGTGGTTTAACCCAGCAATGATGAATACTGGTAATTCCAGGTCAAGTTGGGGGAAAGAGAGTGCTTTG--GCAGGGCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53000755 157 - 190850796 TTTCAGAGATAGAA-GGGGA-TCTGATGAAAGG-----TTACTGCCCCAGCCTACCAGGTCCAAAG---ACTTTTAAAGCAGTTTTGTCTTTGTGGTTTAACCCAGCAATGATGAATACTGGTAATTCCAGGTCAAGTTGGGGGAAAGATAGTGCCTTG--GCAGGGCA i calJac3.chr3 C 0 I 4 s saiBol1.JH378162 8164134 157 - 15139346 TTTCAGAGATAGAA-GGGGG-TCTGATGAAAGG-----TTGCTGCCCCAGCCTACCAGGTCCAAAG---ACTTTTGAAGCAGTTTTGTCTTTGTGGTTTAACCCAGCAATGATGAATACCGATAATTCCAGGTCAAGTTGGGGGAAAGACAGTGCCTTG--GCAGGGCA i saiBol1.JH378162 C 0 I 4 s cebCap1.NW_016107439v1 6948064 162 - 7304997 TTTCAGAGATAGAA-GGGGG-TCTGACTAAAGACCCCCTTACTGCCCCAGCCTACCAGGTCCAAAG---ACTTTTGAAGCAGTTTTGTCTTTGTGGTTTAACCCGGCAGTGATGAATACTGGTAATTCCAGGTCAAGTTGGGGGAAAGCTAGTGCCTTG--GCAGGGCA i cebCap1.NW_016107439v1 C 0 I 25 s aotNan1.NW_018493494v1 9366106 157 - 11631747 TTTCAGAGATAGAA-GGGGG-TCTGACGAAAGG-----TTACTGCCCCAGCCTACCAGGTCCAAAG---ACTTTTGAAGCAGTTTTGTCTTTGTGGTTTAACCCAGCAACGATGAATACTGGTAATTCCAGATCATGTTGGGGGAAAGATAGTGCCTTG--GCAGGGCA i aotNan1.NW_018493494v1 C 0 I 24 s micMur3.chrUn_NW_017968520v1 1772622 157 + 3286835 TTTCAAAGGAAGGA-AGGAA-GCTGATGAAAGG-----TTACTATTCCACCCTACCAGGTCCAGAG---ACTTTCAAATGAGTTTAATCTTTGTGGTTTATGTCAGTAATGATGAAAACTGATAATTCCAGGTTAGCATGGAGGAAACAGAGTGCCTTG--GCAGGGCA i micMur3.chrUn_NW_017968520v1 I 26 C 0 s proCoq1.NW_012140747v1 1861503 162 + 4188776 TTTCAAAGGTAGGA-AGGAA-GCTGATGGAAGG-----TTACTGTTCCACCCTATCAGGTCCAGAGTTTACTTTCAAATGAGTTTAATCTTTGCAGTTTATGTCAGTAATGATGAATACCCATAATTCCAGGTCAGGATGGAGGAAACAGAGTGCCTTGCTCCAGGGCA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8599109 156 + 8790067 CTTCAAAGGTAGAA-GGGAA-GCTGAAGAAAGA-----TTACTGTTACAATCTACCGGGTCCGGAG---ACTTTCAAACGAATTTAACCTTTGTGCTTTACGTTA-TAATGACGGATACCAATAATTCCAGGTCTGGATGGATGACACAGGGTGCCCTG--GAAGAGCA i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4086335 150 - 5279953 -----GAGATGGGA-GGGAA-GCTCATAGAAGT-----TTACTGTCCCACTCCCCCAGGTGCAAAG---ACTTTCTAAGCTGTTTTATCCTGGTGGTTTAAGCT-GTAATGATGGATGCTGGCAATTCTAGGCCAGGTTGGAGGAAAGACAGTGCCTTA---CAGGGAA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=7845.000000 s hg38.chr4_KI270787v1_alt 44730 1 + 111943 A s panTro5.chr4 119609765 1 - 194502333 A i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023183 1 - 195804263 A i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454466 1 - 17550833 A i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327441 1 - 118206036 A i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531106 1 - 190429646 A i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699244 1 - 189454096 A i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267304 1 + 26754465 A i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168574 1 - 5137665 A i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883414 1 - 135778131 A i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985253 1 + 2427316 A i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278822 1 + 1448899 A i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1772779 1 + 3286835 C i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1861665 1 + 4188776 A i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8599265 1 + 8790067 A i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4086485 1 - 5279953 A i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e aotNan1.NW_018493494v1 9366263 24 - 11631747 I e cebCap1.NW_016107439v1 6948226 25 - 7304997 I e saiBol1.JH378162 8164291 4 - 15139346 I e calJac3.chr3 53000912 4 - 190850796 I e canFam3.chr13 47972488 0 + 63241923 C a score=159022.000000 s hg38.chr4_KI270787v1_alt 44731 16 + 111943 CAAGGATACAACTGTG s panTro5.chr4 119609766 16 - 194502333 CAAGGATACAACTGTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023184 16 - 195804263 CAAGGATACAACTGTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454467 16 - 17550833 CAAGGATACAACTGTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327442 16 - 118206036 CAAGAATACAACTGTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531107 16 - 190429646 CAAGGATACAACTGTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699245 16 - 189454096 CAAGGATACAACTGTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267305 16 + 26754465 CAAGGATACAACTGTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168575 16 - 5137665 CAAGGATACAACTATG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883415 16 - 135778131 CAAGGATACAACTGTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985254 16 + 2427316 CAAGGATACAACTGTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278823 16 + 1448899 CAAGGATACAACTGTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53000916 16 - 190850796 TATCTATGCAAGTGTA i calJac3.chr3 I 4 I 4 s saiBol1.JH378162 8164295 16 - 15139346 TATCTATGCAAGTGTA i saiBol1.JH378162 I 4 I 4 s micMur3.chrUn_NW_017968520v1 1772780 16 + 3286835 CAAGGAGACAACTGTG i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1861666 16 + 4188776 CAAGGAGACAACTGTG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8599266 16 + 8790067 CAAGGAGACAACCAGG i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4086486 16 - 5279953 TGAGTAGACAACTGAG i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e aotNan1.NW_018493494v1 9366263 24 - 11631747 I e cebCap1.NW_016107439v1 6948226 25 - 7304997 I e canFam3.chr13 47972488 0 + 63241923 C a score=17100.000000 s hg38.chr4_KI270787v1_alt 44747 1 + 111943 G s panTro5.chr4 119609782 1 - 194502333 G i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023200 1 - 195804263 G i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454483 1 - 17550833 G i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327458 1 - 118206036 G i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531123 1 - 190429646 G i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699261 1 - 189454096 G i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267321 1 + 26754465 G i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168591 1 - 5137665 G i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883431 1 - 135778131 G i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985270 1 + 2427316 G i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278839 1 + 1448899 G i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53000936 1 - 190850796 G i calJac3.chr3 I 4 C 0 s saiBol1.JH378162 8164315 1 - 15139346 G i saiBol1.JH378162 I 4 C 0 s aotNan1.NW_018493494v1 9366287 1 - 11631747 G i aotNan1.NW_018493494v1 I 24 C 0 s micMur3.chrUn_NW_017968520v1 1772796 1 + 3286835 G i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1861682 1 + 4188776 G i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8599282 1 + 8790067 G i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4086502 1 - 5279953 G i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e cebCap1.NW_016107439v1 6948226 25 - 7304997 I e canFam3.chr13 47972488 0 + 63241923 C a score=24264.000000 s hg38.chr4_KI270787v1_alt 44748 3 + 111943 GCA s panTro5.chr4 119609783 3 - 194502333 GCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023201 3 - 195804263 GCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454484 3 - 17550833 GAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327459 3 - 118206036 GCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531124 3 - 190429646 GCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699262 3 - 189454096 GCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267322 3 + 26754465 GCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168592 3 - 5137665 GCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883432 3 - 135778131 GCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985271 3 + 2427316 GCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278840 3 + 1448899 GCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53000937 3 - 190850796 AAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164316 3 - 15139346 AGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948251 3 - 7304997 AGA i cebCap1.NW_016107439v1 I 25 C 0 s aotNan1.NW_018493494v1 9366288 3 - 11631747 AGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1772797 3 + 3286835 GCA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1861683 3 + 4188776 GCA i proCoq1.NW_012140747v1 C 0 I 24 s dasNov3.JH568349 4086503 3 - 5279953 ACA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e otoGar3.GL873602 8599283 0 + 8790067 C e canFam3.chr13 47972488 0 + 63241923 C a score=305382.000000 s hg38.chr4_KI270787v1_alt 44751 27 + 111943 GCCAGTGCCTTAATTACCACTCAAGTT s panTro5.chr4 119609786 27 - 194502333 GCCAGTGCCTTAATTACCGCTCAAGTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023204 27 - 195804263 GCCAGTGCCTTAATTACCGCTCAAGTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454487 27 - 17550833 GCCAGTGCCTTAATTACCGCTCAAGTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327462 27 - 118206036 GCCAGTGCCTTAATTACCTCTCAAGTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531127 27 - 190429646 GCCAGTGCCTTAATTACCTCTCAAGTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699265 27 - 189454096 GCCAGTGCCTTAATTACCTCTCAAGTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267325 27 + 26754465 GCCAGTGCCTTAATTACCTCTCAAGTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168595 27 - 5137665 GCCAGTGCCTTAATTACCTCTCAAGTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883435 27 - 135778131 GCCAGTGCCTTAATTACCTCTCAAGTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985274 27 + 2427316 GCCAGTGCCTTAATTACCTCTCAAGTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278843 27 + 1448899 GCCAGTGCCTTAATTACCTCTCAAGTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53000940 27 - 190850796 GCCAGTCCTCTAATTACTTCTCAAGTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164319 26 - 15139346 GCCAGT-CTCTAATTACTTCTCAAGTT i saiBol1.JH378162 C 0 I 1 s cebCap1.NW_016107439v1 6948254 27 - 7304997 GCCAGTCCTCTAATTACTTCTCAAGTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366291 27 - 11631747 GCCAGTCCTCTAATTACTTCTCAAGTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1772800 24 + 3286835 ---TCATCTTTAATCACTTTTCAAGCC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8599283 26 + 8790067 -CATCACCTTCAATCACTTCCCAAGTC i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4086506 27 - 5279953 GCCAGGCCTTCAACCACCTTTCAAGTC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1861686 24 + 4188776 I e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=513308.000000 s hg38.chr4_KI270787v1_alt 44778 37 + 111943 ACACTCAGCTTTGGAGGC---TTATGCCAGGAAGATAGGT s panTro5.chr4 119609813 37 - 194502333 ACACTCAGCTTTGGAGGC---TTATGCCAGGAAGATAGGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023231 37 - 195804263 ACACTCAGCTTTGGAGGC---TTATGCCAGGAAGATAGGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454514 37 - 17550833 ACACTCAGCTTTGGAGGC---TTATGCCGGGAAGATAGGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327489 37 - 118206036 ACACTCAGCTTTGGAGCC---TTATGCCAGGAAGATAGGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531154 37 - 190429646 ACACTCAGCTTTGGAGGC---TTATGCCAGGAAGATAGGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699292 37 - 189454096 ACACTCAGCTTTGGAGGC---TTATGCCAGGAAGATAGGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267352 37 + 26754465 ACACTCAGCTTTGGAGGC---TTATGCCAGGAAGATAGGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168622 37 - 5137665 ACATTCAGCTTTGGAGGC---TTATGCCAGGAAGATAGGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883462 37 - 135778131 ACACTCAGCATTGGAGGC---TTATGCCAGGAAGATAGGT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985301 37 + 2427316 ACACTCAGCTTTGGAGGC---TTATGCCAGGAAGATAAGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278870 37 + 1448899 ACACTCAGCTTTGGAGGC---TTATGCCAGGAAGATAGAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53000967 36 - 190850796 ACACTCAGC-TTGGAGGC---TTATGCCAGGAAGATAGGT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164346 36 - 15139346 ACACTCAGC-TTGGAGGC---TTATGCCAGGAAGATAGGT i saiBol1.JH378162 I 1 C 0 s cebCap1.NW_016107439v1 6948281 36 - 7304997 ACCCTCAGC-GTGGAGGC---TCATGCCAGGAAGACAGGT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366318 36 - 11631747 ACACTCAGC-TTGGAGGC---TTATGCCAAGAAGATAGGT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1772824 37 + 3286835 ACACTCAGCTTTGGAGGC---TTATACCAAGAAGATAGGT i micMur3.chrUn_NW_017968520v1 C 0 I 98 s proCoq1.NW_012140747v1 1861710 37 + 4188776 ACACTCAGCTTTGGAGCC---TTATACCAAGAAGATAGGT i proCoq1.NW_012140747v1 I 24 C 0 s otoGar3.GL873602 8599309 36 + 8790067 ACCCTCAGCTCC-GAGGC---TGGCGCCCATTAGACAAGT i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4086533 40 - 5279953 ACACTTGGCATTGGAAGCTGATCATGCCTGGAAAATGGCT i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=134207.000000 s hg38.chr4_KI270787v1_alt 44815 12 + 111943 CATGAAACTTAT s panTro5.chr4 119609850 12 - 194502333 CATGAAACTTAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023268 12 - 195804263 CATGAAACTTAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454551 12 - 17550833 CATGAAACTTAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327526 12 - 118206036 CATGAAACTTAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531191 12 - 190429646 CATGAAACTTAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699329 12 - 189454096 CATGAAACTTAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267389 12 + 26754465 CATGAAACTTAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168659 12 - 5137665 CATGAAACTTAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883499 12 - 135778131 CATGAAACTTAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985338 12 + 2427316 CATGAAACTTAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278907 12 + 1448899 CATGAAACTTAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001003 12 - 190850796 CATGAAACTTAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164382 11 - 15139346 CATGAAGCTTG- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948317 12 - 7304997 CATGAAACGTAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366354 12 - 11631747 CATGAAAGTTAT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1861747 12 + 4188776 CACAAAACTTAT i proCoq1.NW_012140747v1 C 0 I 114 s otoGar3.GL873602 8599345 11 + 8790067 CAC-AAACTGAG i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4086573 12 - 5279953 CACAAAACTGGC i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1772861 98 + 3286835 I e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=1056167.000000 s hg38.chr4_KI270787v1_alt 44827 102 + 111943 CTACAGGTCCCAAGTGCATCCTCAGGTCTCCTGGATCCTTCCCTTCTTGTATTTTCATTCCTGTGACA-TAGATCAGATT--TTTCTTTCTCTCTAGATTACAAC s panTro5.chr4 119609862 102 - 194502333 CTACAGGTCCCAAGTGCATCCTCAGGTCTCCTGGATCCTTCCCTTCTTGTATTTTCATTCCTGTGACA-TAGATCAGATT--TTTCATTCTCTCTAGATTACAAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023280 102 - 195804263 CTACAGGTCCCAAGTGCATCCTCAGGTCTCCTGGATCCTTCCCTTCTTGTATTTTCATTCCTGTGACA-TAGATCACATT--TTTCATTCTCTCTAGATTACAAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454563 102 - 17550833 CTACAGGTCCCAAGTGCATCTTCAGGTCTCCTGGATCCTTCCCTTCTTGTATTTTCATTCCTGTGACC-TAGATCAGATT--TTTCATTCTCTGTAGATTACAAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327538 102 - 118206036 CTATAGGTCCCAAGTGCATCCTCAGGTCTCCTGGATCCTTCCCTTCTTGTATTTTCATTCCTGTGACA-TAGATCAGATT--TTTCATTCTCTCTAGATTACAAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531203 103 - 190429646 CAACAGGTCCCGAGTGCATCCTCAGGTCTCCTGGATCCTTCCCCCCTTGTGTTTTCATTCCTGTGACATTAGATCAGATT--TTTCATTCTCTCTAGATTACCAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699341 103 - 189454096 CAACAGGTCCCGAGTGCATCCTCAGGTCTCCTGGATCCTTCCCCCCTTGTGTTTTCATTCCTGTGACATTAGATCAGATT--TTTCATTCTCTCTAGATTACCAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267401 103 + 26754465 CAACAGGTCCTGAGTGCATCCTCAGGTCTCCTGGATCCTTCCCCCCTTGTGTTTTCATTCCTGTGACATTAGATCAGATT--TTTCATTCTCTCTAGATTACCAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168671 103 - 5137665 CAACAGGTCCCGAGTGCATCCTCAGGTCTCCTGGATCCTTCCCCCTTTGTGTTTTCATTCCTGTGACATTAGATCAGATT--TTTCATTCTCTCTAGATTACAAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883511 103 - 135778131 CAACAGGTCCCAAGTGCATCCTCAGGTCTCCTGGATCCTTCCCCCCTTGTGTTTTCATTCCTGTGACATTAGATCAGATT--TTTAATTCTCTCTAGATTACAAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985350 103 + 2427316 CAACAGGTCCCGAGTGCATCCTCAGGTCTCCTGGATCCTTCCCCCTTTGTGTTTTCATTCCTGTGACATTAGATCAGATT--TTTCATTCTCTCTAGATTACAAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1278919 102 + 1448899 CAACAGGTCCCAAGTGCATCCTCAGGTCTCCTGGATCCTTCTCCTCTTGTGTTTTCATTCCTGTGACATTAGATCAT-TT--TTTCATTCTCTCTAGATTAGAAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001015 99 - 190850796 CTACAAGCACCAAGTGCATCCTCGGTTCTCCTGGATCCTTCCCTTCTTGTATTTTCATTCCTGTGACATTAGATTAGATT--TTTCACCCTC-ATAGATT---AC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164393 98 - 15139346 --ATAAGCACCAAGTGCATCCTCAGGTCTCCTGGATCCTTCCTTTCTTGTATTTTCATTCCTGTGACATTGGTTTAGACT--TTTCACTCTCTCTAGATT---AC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948329 100 - 7304997 CTACAAGCACCAAGTGCATCCTCAGGTCTCCTGGATCCCTCCCTTCTTGTGTTTTCATTCCTGCGACATTAGATTAGACT--TTTCACTCTCTCTAGATT---AC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366366 100 - 11631747 CTACAAGCACCAAGTGCATCCTCAGGTCTCCTGGATCCTTCCCTTCTTGTATTTTCATTCCTGTGACATTAGATTAGACT--TTTCACTCTATCTAGATT---AC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8599356 99 + 8790067 CTACAGGAGCCACATGCACCCACAAGTCTCCTGGCTCCTCCTCTTCTTCCATTTTCACTTCTGTGACATTAGATCAGG-T--TTTCACACTCTCTAGGTTAC--- i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4086585 101 - 5279953 TTCCAGGGGCCAAATGCTTCCTTGCATATCCTGAAGCTTCC----CTTATACACTCACTTCTGTGAACTTAGGCAAGGTTCGTTTCACACTCTCTAGGTTAAAAT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1861759 114 + 4188776 I e micMur3.chrUn_NW_017968520v1 1772861 98 + 3286835 I e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=435519.000000 s hg38.chr4_KI270787v1_alt 44929 31 + 111943 AACAATATTCCCTGTTTCCAATAAATCTGAT s panTro5.chr4 119609964 31 - 194502333 AACAATATTCCCTGTTTCCAATAAATCTGAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023382 31 - 195804263 AACAATATTCCCTGTTTCCAATAAATCTGAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454665 31 - 17550833 AACAATATTCCCTGTTTCCAATAAATCTGAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327640 31 - 118206036 AACAATATTCCTTGTTTCCAATAAATCTGAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531306 31 - 190429646 AACAATATTCCTTGTTTCCAATAAATCTGAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699444 31 - 189454096 AACAATATTCCTTGTTTCCAATAAATCTGAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267504 31 + 26754465 AACAATATTCCTTGTTTCCAATAAATCTGAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168774 31 - 5137665 AACAATATTCCTTGTTTCCAATAAATCTGAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883614 31 - 135778131 AACAATATTCCTTGTTTCCAATAAATCTGAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985453 31 + 2427316 AACAATATTCCTTGTTTCCAATAAATCTGAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279021 31 + 1448899 AACAATATTCCTTGTTTCCAATAAATCTGAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001114 31 - 190850796 AACAATATTCCTTGTTTCCAATAAATCTGAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164491 31 - 15139346 AACAATATACCTTGTTTCCAATAAATCTGAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948429 31 - 7304997 AACAATATTCCTTGTTTCCAATAAATCTGAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366466 31 - 11631747 AACAATATTCCTTGTTTCCAATAAATCTGAT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1772959 31 + 3286835 AACAATATTCCTTGTCTCTAATAAATCTGAC i micMur3.chrUn_NW_017968520v1 I 98 C 0 s otoGar3.GL873602 8599455 31 + 8790067 CAGAATGTTCCTTGTTTCCACTATATCTGAC i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4086686 28 - 5279953 ---AATTTTTCTTGTGTCCAGTAAACCTGAT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1861759 114 + 4188776 I e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=7085.000000 s hg38.chr4_KI270787v1_alt 44960 1 + 111943 G s panTro5.chr4 119609995 1 - 194502333 G i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023413 1 - 195804263 G i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454696 1 - 17550833 G i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327671 1 - 118206036 G i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531337 1 - 190429646 G i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699475 1 - 189454096 G i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267535 1 + 26754465 G i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168805 1 - 5137665 G i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883645 1 - 135778131 G i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985484 1 + 2427316 G i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279052 1 + 1448899 G i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1772990 1 + 3286835 A i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8599486 1 + 8790067 A i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4086714 1 - 5279953 G i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1861759 114 + 4188776 I e mm10.chr5 76405135 120 + 151834684 I e aotNan1.NW_018493494v1 9366497 0 - 11631747 C e cebCap1.NW_016107439v1 6948460 0 - 7304997 C e saiBol1.JH378162 8164522 0 - 15139346 C e calJac3.chr3 53001145 0 - 190850796 C e canFam3.chr13 47972488 0 + 63241923 C a score=38532.000000 s hg38.chr4_KI270787v1_alt 44961 5 + 111943 GCAAT s panTro5.chr4 119609996 5 - 194502333 GCAAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023414 5 - 195804263 GCAAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454697 5 - 17550833 GCAAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327672 5 - 118206036 GCAAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531338 5 - 190429646 GCAAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699476 5 - 189454096 GCAAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267536 5 + 26754465 GCAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168806 5 - 5137665 GCAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883646 5 - 135778131 GCAAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985485 5 + 2427316 GCAGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279053 5 + 1448899 GCAAT i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8599487 5 + 8790067 GCAAT i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4086715 5 - 5279953 CCAAT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1861759 114 + 4188776 I e micMur3.chrUn_NW_017968520v1 1772991 0 + 3286835 C e mm10.chr5 76405135 120 + 151834684 I e aotNan1.NW_018493494v1 9366497 0 - 11631747 C e cebCap1.NW_016107439v1 6948460 0 - 7304997 C e saiBol1.JH378162 8164522 0 - 15139346 C e calJac3.chr3 53001145 0 - 190850796 C e canFam3.chr13 47972488 0 + 63241923 C a score=28224.000000 s hg38.chr4_KI270787v1_alt 44966 4 + 111943 GCAT s panTro5.chr4 119610001 4 - 194502333 GCAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023419 4 - 195804263 GCAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454702 4 - 17550833 GCAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327677 4 - 118206036 GCAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531343 4 - 190429646 GCAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699481 4 - 189454096 GCAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267541 4 + 26754465 GCAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168811 4 - 5137665 GCAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883651 4 - 135778131 GCAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985490 4 + 2427316 GCAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279058 4 + 1448899 GCAT i colAng1.NW_012119221v1 C 0 C 0 s dasNov3.JH568349 4086720 4 - 5279953 ACAT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1861759 114 + 4188776 I e micMur3.chrUn_NW_017968520v1 1772991 0 + 3286835 C e mm10.chr5 76405135 120 + 151834684 I e aotNan1.NW_018493494v1 9366497 0 - 11631747 C e cebCap1.NW_016107439v1 6948460 0 - 7304997 C e saiBol1.JH378162 8164522 0 - 15139346 C e calJac3.chr3 53001145 0 - 190850796 C e otoGar3.GL873602 8599492 0 + 8790067 C e canFam3.chr13 47972488 0 + 63241923 C a score=1466218.000000 s hg38.chr4_KI270787v1_alt 44970 266 + 111943 CCTC-----tttttttttttttttttt----tttgagatggagtctcgctctgtcgcccaggctggagtgcagtggcacaatctcagctcactgcaacctccgcctcccgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggtgtgtgccaccacgccc-gctaatttttgtgtttttagtagaaatggggtttcaccatgttggccaggctggtctcgatctcctgacttcatgatccacctgcctcggcctcccaa s panTro5.chr4 119610005 271 - 194502333 CCTCttttttttttttttttttttttt----tttgagatggagtctcgctctgtcgcccaggctggagtgtagtggcacaatctcagctcactgcaacctccgcctcccgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggtgtatgccaccacgccc-gctaatttttgtgtttttagtagaaatggggtttcaccatgttggccaggctggtctcgatctcctgacctcatgatccacctgtctcggcctcccaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023423 263 - 195804263 CCtt--------ttttttttttttttt----gttgagatggagtctcgctctgtcgcccaggctggagtgcagtggcacaatctcagctcactgcaacctccgcctcccgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggtgtatgccaccacgcct-gctaatttttgtgtttttagtagaaatggggtttcaccatgttggccaggctggtctcgatctcctgacctcatgatccacctgtctcggcctcccaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454706 255 - 17550833 CCTC----------------ttttttt----tttgagatggagtctcgctctgtcgcccaggctggagtacggtggcacaatctcagctcactgcaaactccacctcccaggttcaagcagttctcccacctcagcctcccaagtagctgggattacaggtgtgcgccaccacgccc-actaatttttgtgtttttagtagaaatggggtttcaccatgttggccaggctggtctcgatctcctgacctcatgatccacctgcctcggcctcccaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327681 260 - 118206036 CCTC----------------TTTTTTTAGGGGGGgggatggagtctcgctctgtcacccaggctggcgtgcagtggcacaatctcagctcactgcaacctccgcctcccgggttcaagaaattctcctgcctcagcctcccgagtagctgggattacaggtgtgcgccaccatgcccagctaatttttgtgtttttagtagaaatggggtttcaccatgttggccaggctggtctcgatctcctgacctcatgatctacctgcctcggcctcccaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531347 261 - 190429646 CCTC-----------tttttttttttt----tttgagatggagtctcgctctgtagcccaggctggagtgcagtggcacaatctcagctcactgcaacctccgccttccgggttcaagcaattctcctgcctcagcctcctgagtagctgagattacaggtgtgcaccaccacacccagctaatttttgtgtttttagtagaaagggggtttcaccatgttggccaggctggtctcgatctcctgacctcatgatccacccgcctcggcctcccaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699485 262 - 189454096 CCTC----------ttttttttttttt----tttgagatggagtctcgctctgtagcccaggctggagtgcagtggcacaatctcagctcactgcaacctccgccttccgggttcaagcaattctcctgcctcagcctcctgagtagctgagattacaggtgtgcaccaccacacccagctaatttttgtgtttttagtagaaagggggtttcaccatgttggccaggctggtctcgatctcctgacctcatgatccacccgcctcggcctcccaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267545 264 + 26754465 CCTC--------ttttttttttttttt----tttgagatggagtctcgctctgtagcccaggctggagtgcagtggcacaatctcagctcactgcaacctccgccttccgggttcaagcaattctcctgcctcagcctcctgagtagctgagattacaggtgtgcaccaccacacccagctaatttttgtgtttttagtagaaagggagtttcaccatgttggccaggctggtctcgatctcctgacctcatgatccacccgcctcggcctcccaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4168815 263 - 5137665 CCTC---------tttttttttttttt----tttgagatggagtctcgctctgtagcccaggctggagtgcagtggcacaatctcagctcactgcaacctccgccttccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgtgcaccaccacacccagctaatttttgtgtttttagtagaaacggggtttcaccatgttggccaggctggtctcgatctcctgacctcatgatccacccgccttggcctcccaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883655 266 - 135778131 CCTC------ttttttttttttttttt----tttgagatggagtctcgctctgtagccccggctggagtgctgtgggaccatctcagctcactgcaacctccgccttccgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgtgcaccaccacacccagctaatttttgtgtttttggtagaaacggggtttcaccatgttggccaggctggtcttgatctcctgacctcatgatccacccgcctcggcctcccaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985494 265 + 2427316 CCTC-------tttttttttttttttt----tttgagatggagtctcgctctgtagcccaggttggagtgcagtggcacaatctcagctcactgcaacctccgccttccgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgtgcaccaccacacccagctaatttttgtgtttttagtagaaacggggtttcaccatgttggccaggctggtctcgatctcctgacctcatgatccacccgcctcggcctcccaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279062 258 + 1448899 CCCC--------------ttttttttt----tttgagatggagtctcgctctgtagcccaggctggagtgcagtggcacaatctcagctcactgcaacctccaccttccgagttcaagcaattctcctgccccagcctcccgagtagctgggattacaggtatgcaccaccacacccagctaatttttgtgtttttagtagaaacggggtttcaccatgttggccaggctggtctcgatctcctgacctcatgatccacccgcctcggcctgccaa i colAng1.NW_012119221v1 C 0 C 0 e proCoq1.NW_012140747v1 1861759 114 + 4188776 I e micMur3.chrUn_NW_017968520v1 1772991 0 + 3286835 C e mm10.chr5 76405135 120 + 151834684 I e dasNov3.JH568349 4086724 0 - 5279953 C e aotNan1.NW_018493494v1 9366497 0 - 11631747 C e cebCap1.NW_016107439v1 6948460 0 - 7304997 C e saiBol1.JH378162 8164522 0 - 15139346 C e calJac3.chr3 53001145 0 - 190850796 C e otoGar3.GL873602 8599492 0 + 8790067 C e canFam3.chr13 47972488 0 + 63241923 C a score=12000.000000 s hg38.chr4_KI270787v1_alt 45236 1 + 111943 g s panTro5.chr4 119610276 1 - 194502333 g i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023686 1 - 195804263 g i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454961 1 - 17550833 g i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327941 1 - 118206036 g i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531608 1 - 190429646 g i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699747 1 - 189454096 g i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267809 1 + 26754465 g i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4169078 1 - 5137665 g i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883921 1 - 135778131 g i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985759 1 + 2427316 g i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279320 1 + 1448899 g i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001145 1 - 190850796 G i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164522 1 - 15139346 G i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948460 1 - 7304997 G i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366497 1 - 11631747 G i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1861759 114 + 4188776 I e micMur3.chrUn_NW_017968520v1 1772991 0 + 3286835 C e mm10.chr5 76405135 120 + 151834684 I e dasNov3.JH568349 4086724 0 - 5279953 C e otoGar3.GL873602 8599492 0 + 8790067 C e canFam3.chr13 47972488 0 + 63241923 C a score=72369.000000 s hg38.chr4_KI270787v1_alt 45237 5 + 111943 gCAAT s panTro5.chr4 119610277 5 - 194502333 gCAAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023687 5 - 195804263 gCAAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454962 5 - 17550833 gCAAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327942 5 - 118206036 gCAAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531609 5 - 190429646 gCAAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699748 5 - 189454096 gCAAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267810 5 + 26754465 gCAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4169079 5 - 5137665 gCAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883922 5 - 135778131 gCAAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985760 5 + 2427316 gCAAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279321 5 + 1448899 gCAAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001146 5 - 190850796 GCAAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164523 5 - 15139346 GCAAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948461 5 - 7304997 GCAAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366498 5 - 11631747 GCAAT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1772991 5 + 3286835 GCAAT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1861873 5 + 4188776 GCAAT i proCoq1.NW_012140747v1 I 114 C 0 e mm10.chr5 76405135 120 + 151834684 I e dasNov3.JH568349 4086724 0 - 5279953 C e otoGar3.GL873602 8599492 0 + 8790067 C e canFam3.chr13 47972488 0 + 63241923 C a score=65322.000000 s hg38.chr4_KI270787v1_alt 45242 4 + 111943 GCAT s panTro5.chr4 119610282 4 - 194502333 GCAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023692 4 - 195804263 GCAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454967 4 - 17550833 GCAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327947 4 - 118206036 GCAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531614 4 - 190429646 GCAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699753 4 - 189454096 GCAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267815 4 + 26754465 GCAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4169084 4 - 5137665 GCAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883927 4 - 135778131 GCAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985765 4 + 2427316 GCAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279326 4 + 1448899 GCAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001151 4 - 190850796 GCAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164528 4 - 15139346 GCAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948466 4 - 7304997 GCAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366503 4 - 11631747 GCAT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1772996 4 + 3286835 GCAT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1861878 4 + 4188776 GCAT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8599492 4 + 8790067 GCAT i otoGar3.GL873602 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e dasNov3.JH568349 4086724 0 - 5279953 C e canFam3.chr13 47972488 0 + 63241923 C a score=568429.000000 s hg38.chr4_KI270787v1_alt 45246 38 + 111943 CCTCTCTTAGC--AGTCACCAGAATAATCCTTAAACACAA s panTro5.chr4 119610286 38 - 194502333 CCTCTCTTAGC--AGTCACCAGAATAATCCTTAAACACAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023696 38 - 195804263 CCTCTCTTAGC--AGTCACCAGAATAATCCTTAAACACAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4454971 38 - 17550833 CCTCTCTTAGC--AGTCACCAGAATAATCCTTAAACACAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327951 38 - 118206036 CCTCTCTTAGC--AGTCACCAGAATAATCCTTAAACACAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531618 38 - 190429646 CCTTTCTTAGC--AGTCACCAGAATAATCCTTAAACACAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699757 38 - 189454096 CCTTTCTTAGC--AGTCACCAGAATAATCCTTAAACACAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267819 38 + 26754465 CCTTTCTTAGC--AGTCACCAGAATAATCCTTAAACACAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4169088 38 - 5137665 CCTTTCTTAGC--AGTCACCAGAATAATCCTTAAGCACAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883931 38 - 135778131 CCTTTCTTAGC--AGTCACCAGAATAATCCTTAAACACAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985769 38 + 2427316 CCTTTCTTAGC--AGTCACCAGAATAATCCTTAAGCACAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279330 38 + 1448899 CCTCTCTTAGC--AGTCACCACAATAATCCTTAAACACAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001155 38 - 190850796 CCTCTCTTGGC--AGTCACTAGAATAATCCTCAAACACAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164532 38 - 15139346 CCTCTCTTAGC--AGTCACTAGAATAATCCTTAAACACAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948470 38 - 7304997 CCTCTCGTAGC--AGTCACAAGAATAATCCCTAAACACAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366507 38 - 11631747 CCTCTCTTAGC--AGTCACTAGAATAATCCTTAAACACAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1773000 38 + 3286835 CCTCTCTCAGC--AGACACTAGAATAATCCTTAAACACAA i micMur3.chrUn_NW_017968520v1 C 0 I 26 s proCoq1.NW_012140747v1 1861882 38 + 4188776 TCTCTCTCAGC--AGACACTAGAATAATCCTTAAACACAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8599496 37 + 8790067 CGTCTCTCAGT--AGACACTAGAATGATTCTTAAACACA- i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4086724 40 - 5279953 CTTCTCTCAGCAAAGTCTCGAGAATAATCCCTAACCATAA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=289619.000000 s hg38.chr4_KI270787v1_alt 45284 27 + 111943 TTACACTGTGTTAAT-----TATATAGATAAG s panTro5.chr4 119610324 27 - 194502333 TTACACTGTGTTAAT-----TATATAGATAAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023734 27 - 195804263 TGACACTGTGTTAAT-----TATATAGATAAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4455009 27 - 17550833 TTACACTGTGTTAAT-----TATATAGATAAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69327989 27 - 118206036 TTATACTGTGTTAAT-----TATATAGATAAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531656 27 - 190429646 ATACACTATGTTAAT-----TATATAGATAAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699795 27 - 189454096 ATACACTATGTTAAT-----TATATAGATAAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267857 27 + 26754465 ATACACTATGTTAAT-----TATATAGATAAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4169126 27 - 5137665 ATGCACTATGTTAAT-----TATATAGATAAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883969 27 - 135778131 ATACACTATGTTAAT-----TATATAGATAAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985807 27 + 2427316 ATACACCATGTTAAT-----TATATAGCTAAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279368 27 + 1448899 ATACACTGTGTTAAT-----TATATAGATAAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001193 27 - 190850796 TTACACTGTGTTAAT-----TACATAGATAAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164570 27 - 15139346 TTACACTGTGTTAAT-----TACATAGATAAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948508 27 - 7304997 TTACACTGTGTTAAT-----TACATAGATAGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366545 27 - 11631747 TTACACTGTGTTAAT-----TACATAGATAAG i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1861920 27 + 4188776 -----CCATGTCATTTATAATATATAGATAAA i proCoq1.NW_012140747v1 C 0 I 1 s otoGar3.GL873602 8599533 23 + 8790067 ----ACCAGGTCACT-----CACATCGATAAA i otoGar3.GL873602 C 0 I 2 s dasNov3.JH568349 4086764 26 - 5279953 TTATATCG-GTCATT-----TCCACAGGTAGG i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1773038 26 + 3286835 I e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=1368930.000000 s hg38.chr4_KI270787v1_alt 45311 95 + 111943 GGTAGTT----------TTCTTCTAATGTTTTTTGGAGGCTGATCCTAAAGTATT-GAAAGCTTCCACCT---ACCTCATCTCATCTAAGTTAATTTCTTCATCCCTCT s panTro5.chr4 119610351 95 - 194502333 GGTAGTT----------TTCTTCTAATGTTTTTTGGAGGCTGATCCTAAAGTATT-GAAAGCTTCCACCT---ACCTCATCTCATCTAAGTTAATTTCTTCATCCCTCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023761 95 - 195804263 GGTAGTT----------TTCTTCTAATGTTTTTTGGAGGCTGATCCTAAAGTATT-GAAAGCTTCCACCT---ACCTCATCTCATCTAAGTTAATTTCTTCATCCCTCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4455036 98 - 17550833 GGTAGTT----------TTCTTCTAATGTTTTTTGGAGGCTGATCCTAAAGTATT-GAAAGCTTCCACCTACCACCTCATCTCATCTAAGTTAATTTCTTCATCCCTCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69328016 95 - 118206036 GGTAGTT----------TTCTTCTAATGTCTTTTGGAGGCTGAGCCTAAAGTATT-GAAAGCTTCCACCT---ACCTCATCTCATCTAAGTTAATTTCTTCATCCCTCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531683 95 - 190429646 GGTAGTT----------TTCTTCTAATGTCTTTTGGAGGCTGAGCCTAAAGTATT-GAAAGCTTCCACCT---GCCTCATCTCGTCTAAGTTAATTTTTTCAGCCCTCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699822 95 - 189454096 GGTAGTT----------TTCTTCTAATGTCTTTTGGAGGCTGAGCCTAAAGTATT-GAAAGCTTCCACCT---GCCTCATCTCGTCTAAGTTAATTTTTTCAGCCCTCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267884 95 + 26754465 GGTAGTT----------TTCTTCTAATGTCTTTTGGAGGCTGAGCCTAAAGTATT-GAAAGCTTCCACCT---GCCTCATCTCGTCTAAGTTAATTTTTTCAGCCCTCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4169153 95 - 5137665 GGTAGTT----------TTCTTCTAATGTCTTTTGGAGGCTGAGCCTAAAGTATT-GAAAGCTTCCACCT---GCCTCATCTCGTCTAAGTTAATTTTTTCAGCCCTCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122883996 95 - 135778131 GGTAGTT----------TTCTTCTAATGTCTTTTGGAGGCTGAGCCTAAAGTATT-GAAAGCTTCCACCT---GCCTCATCTTGTCTAAGTTAATTTTTTCAGCCCTCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985834 95 + 2427316 GGTAGTT----------TTCTTCTAATGTCTTTTGGAGGCTGAGCCTAAAGTATT-GAAAGCTTCCACCT---GCCTCATCTCGTCTAAGTTAATTTTTTCAGCCCTCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279395 95 + 1448899 GGTAGTT----------TTCTTCTAATGTCTTTTGGTGGCTGAGACTAAAGTATT-GAAAGCTTCCACCT---GCCTCATCTCGTCTAAGTTAATTTCTTCATCCCTCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001220 95 - 190850796 GGTAGTT----------TTCTTCTAATGTCTTTTGGAGGCTGAGCCTAAAGTACT-GAAAGCTTCCACCT---ACCATGTCTCACCTAAGTTAATTTCTTTATCCCTCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164597 95 - 15139346 GGTAGTT----------TTCTTCTAATGTCTTTTGGAGGCTGAGCCTAAAGTATT-GAAAGCTTCCACCT---ACCTCGTCTCACCTAAGTTAATTTCTTTATCCCTCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948535 95 - 7304997 GGTAGTT----------TTCTTCTAATGTCTTTTGGAGGCTGAGCCTAAAGTATT-GAAAGCTTCCATCT---ACCTCGTCTCACCTAAGTTAATTTCTTTATCCCTCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366572 95 - 11631747 GGTAGTT----------TTCTTCTAATGTCTTTTGGAGGCTGAGCCTAAAGTATT-GAAATCTTCCACCT---ACCTCGTCTCACCTAAGTTAATTTCTTTATCCCTCT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1773064 95 + 3286835 GGTAGTT----------TTCTCCTAATGTTTTTTTGAGGCTGAGCCTGAAGTATT-GAGAGCTTCCATCT---ACCTCCTTTCTCCTAAGTTAATTTCTTCATCCTTCT i micMur3.chrUn_NW_017968520v1 I 26 C 0 s proCoq1.NW_012140747v1 1861948 95 + 4188776 GGTACTT----------TTCTCCTAATGTTCTTTTGAGGCTGAGCCTAAAGTATT-GACAGCTTCCATCT---ATCTCCTTTCTCCTACGTTAATTTCTGCATCCTTCT i proCoq1.NW_012140747v1 I 1 I 119 s otoGar3.GL873602 8599558 95 + 8790067 GCAGGTT----------TTTTTCTAATATCTTTTTGAAGCTGAACCTAAAGCATT-GAAAGGTTCCATCC---ACCTCCTTTCTCCTGAGTTGATTTCTTCAGCCTTCC i otoGar3.GL873602 I 2 C 0 s dasNov3.JH568349 4086790 103 - 5279953 AGGAGTTTTGTTTTTTGTTTTTTTAATGTCTT---GGAGTTGGGTCTAAAGTATTGGGAATCTTCCACCT---ACCTTCTCTCTTATAAGTTAATTTCTTCATCTTTTT i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=1372235.000000 s hg38.chr4_KI270787v1_alt 45406 120 + 111943 ATGTTACACACACTCTCCTCTCCAACCCAGAAACACAATTTAGGCTTATCTGCTGAAGCATGTTGTTACACTATCTGTGCTA-TTTACTTCTCTGGATGCTTTATCCAGAGAAGTTACCC-C s panTro5.chr4 119610446 120 - 194502333 ATGTTACACACACTCTCCTCTCCAACCCAGAAACACAATTTAGGCTTATCTGCTGAAGCATGTTGTTACACTATCTGTGCTA-TTTACTTCTCTGGATGCTTTATCCAGAGAAGTTACCC-C i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023856 120 - 195804263 ATGTTACACACACTCTCCTCTCCAACCCAGAAACACAATTTAGGCTTATCTGCTGAAGCATGTTGTTACACTATCTGTGCTA-TTTACTTCTCTGGATGCTTTATCCAGAGAAGTTACCC-C i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4455134 120 - 17550833 TTGTTACACACACTCTCCTCTCCAACCCAGAAACACAATTTAGGCTTATCTGCTGAAGCATGTTGTTACACTATCTGTGCTA-TTTACTTCTCTGGATGCTTTATCCAGAGAGGTTACCC-C i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69328111 120 - 118206036 GTGTTACACACACTCTCCTCTCCAACCCAGAAACACAATTTAGGGTTATCTGCTGAAGCATGTTGTTACACTATGTGTGCCA-TTTACTTCTCTGGATGCTTTATCCAGAGAAGTTACCC-C i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531778 120 - 190429646 ATGTTACACACACTCTCCTCTTCAACCCAGAAACACAATTTAGGGTTATCTGCTGAAGCATGTTGTTACACTATCTGTGCTA-TTTACTTCTCTGGATGCTTTATCCAGAGAAGTCACCC-C i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110699917 120 - 189454096 ATGTTACACACACTCTCCTCTTCAACCCAGAAACACAATTTAGGGTTATCTGCTGAAGCATGTTGTTACACTATCTGTGCTA-TTTACTTCTCTGGATGCTTTATCCAGAGAAGTCACCC-C i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13267979 120 + 26754465 ATGTTACACACACTCTCCTCTTCAACCCAGAAACACAATTTAGGGTTATCTGCTGAAGCATATTGTTACACTATCTGTGCTA-TTTACTTCTCTGGATGCTTTATCCAGAGAAGTCACCC-C i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4169248 120 - 5137665 ATGTTACATACACTCTCCTCTTCAACCCAGAAACACAATTTAGGGTTATCCGCTGAAGCATGTTGTTACACTATCTGTGCTA-TTTACTTCTCTGGATGCTTTATCCAGAGAAGTTACCC-C i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122884091 120 - 135778131 ATGTTACACACACTCTCCTCTTCAACCCAGAAACACAATTTAGGGTTATCTGCTGAAGCATGTTGTTACACTATCTGTGCTA-TTTACTTCTCTGGATGCTTTATCCAGAGAAGTTACCC-C i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1985929 120 + 2427316 ATGTTACACACACTCTCCTCTTCAACCCAGAAACACAATTTAGGGTTATCCGCTGAAGCATGTTGTTACACTATCTGTGCTA-TTTACTTCTCTGGATGCTTTATCCAGAGAAGTTACCC-C i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279490 120 + 1448899 GTGTTACACACACACTCCTCTTCAACCCAGAAACACAATTTAGGGTTATCTGCTGAAGCATGTTGTTACACTATCTGTGCTA-TTTACTTCTCTGGATGCTTTATCCAGAGAAGTTACCC-C i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001315 120 - 190850796 ATGCTAGACACACTCTCCTCGCCAAACCAGAACCACAATTTAGGGTCATCTACTGAAGCATGTTGTTACACTATCTGTGCTA-TTTACTTCTCCGGATGCTTTATCCAGATAACTTACTC-C i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164692 120 - 15139346 ATGCTAGACATACTCTCCTCGCCAAACCAGAACCACAATTTAGGGTCGTCTACTGAAGCATGTTGTTACACTATCTGTGCTA-TTTACTTCTCGGGATGCTTTATCCAGATAAGTTGCTC-C i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948630 120 - 7304997 ATGCTAGACACACTCTCCTCGCCAAACCAGAACCACAACTTAGGGTCATCTACTGAAGCATGTTGTTACATTATCTGTGCTA-TTGACTTCTCCGGATGCTTTATCCAGATAAGTTACTC-C i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366667 120 - 11631747 ATGCTAGACACGCTCTCCTCGCCAAACCAGAACCACAATTTAGGGTCATCTACTGAAGTATGTTGTTACACTATCTGTGCTA-TTTACTTCTCCGGATGCTTTATCCAGATAAGTTACTC-C i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1773159 119 + 3286835 GTACTACGCTC-TTCTCCACTCCAACCCAGAACCACAGCACAGGGTCCTCTGCTGAAGCCTGCCGTCACACTGTCTGTGCTA-CTGAATTCTCTGGACTCTCCATCCATCATTGTCACTCA- i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8599653 113 + 8790067 ACACTACATAC-CTCTCCACTCCAGCTCAGAACCACAATGTAAGGTCCTCTG-TGAAGCTTGCCTTTAC-----CTGTGCTATCTGTTTCCTCTGGACTCTCCAACAACCAGCGTCTCTC-- i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4086893 101 - 5279953 CTACTATATACACTCCCCACTCAAACCTAGAAAC-TGTCTTAGGGTCCTTTGCTGATGCTTGCTCTTTCACTATCTGTGCTC-TTTACTGATCTGGAC------TCCAC------------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1862043 119 + 4188776 I e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=440196.000000 s hg38.chr4_KI270787v1_alt 45526 35 + 111943 AAAGCTGGCT------------------------TTACACGTGTTATTCTAGGAAACCT s panTro5.chr4 119610566 35 - 194502333 AAAGCTGGCT------------------------TTACACGTGTTATTCTAGGAAACCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121023976 35 - 195804263 AAAGCTGGCT------------------------TTACACGTGTTATTCTAGGAAACCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4455254 35 - 17550833 AAAGCTGGCT------------------------TTAAACCTGTTATTCTAGGGAACCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69328231 35 - 118206036 AAAGCTGGCT------------------------TTACACCTATTATTCTAGGAAACCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531898 35 - 190429646 AAAGCTGGCT------------------------TTACACCTATTATTCTCGGAAACCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700037 35 - 189454096 AAAGCTGGCT------------------------TTACACCTATTATTCTCGGAAACCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268099 35 + 26754465 AAAGCTGGCT------------------------TTACACCTATTATTCTCGGAAACCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4169368 35 - 5137665 AAAGCTGGCT------------------------TTACACCTATTATTCTCGGAAACCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122884211 35 - 135778131 AAAGCTGGCT------------------------TTACACCTATTATTCTCGGAAACCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986049 35 + 2427316 AAAGCTGGCT------------------------TTACACCTATTATTCTCGGAAACCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279610 35 + 1448899 AAGGCTGGCT------------------------TTACACCTATTATTCTCGGAAACCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001435 35 - 190850796 AAAGCTGGCT------------------------TTGCCCCTATTATTCCAGGAAACCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164812 34 - 15139346 AAAGCTGGCT------------------------TTG-CCCTATTATTCTAGGAAATCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948750 35 - 7304997 AAAGCTGGCT------------------------GTGCCCCTATTATTCTAGGAAACCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366787 35 - 11631747 AAAGCTGGCT------------------------TTGCCCCTATTATTCTAGGAAACCT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1773278 35 + 3286835 AAAGTTGGCT------------------------TCACACTCGTTATTCTAGGAAACTT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1862162 35 + 4188776 AAAGCTGGCT------------------------TTCTACTCGTTATTCTAGGAAACTT i proCoq1.NW_012140747v1 I 119 C 0 s otoGar3.GL873602 8599766 59 + 8790067 AAAGCCATCTCTGTACAGGAACTTTATGTCCATGCTGTACTTATTATCTTAGAAAACTT i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4086994 35 - 5279953 CAACCTAGCA------------------------TTCCCTTTATTTTTCTAGGAAACTT i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I e canFam3.chr13 47972488 0 + 63241923 C a score=232865.000000 s hg38.chr4_KI270787v1_alt 45561 18 + 111943 CTAATCATTGACTCTAAC s panTro5.chr4 119610601 18 - 194502333 CTAATCATTGACTCTAAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024011 18 - 195804263 CTAATCATTGACTCTAAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4455289 18 - 17550833 CTAATCATTGACTCTAAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69328266 18 - 118206036 CTAATCATTGACTCTAAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531933 18 - 190429646 CTCATCATTGACTCTAAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700072 18 - 189454096 CTCATCATTGACTCTAAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268134 18 + 26754465 CTCATCATTGACTCTAAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4169403 18 - 5137665 CTAATCATTGACTCTAAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122884246 18 - 135778131 CTAATCGTTGACTCTAAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986084 18 + 2427316 CTAATCATTGACACTAAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279645 18 + 1448899 CTAATCATTGACTCTAAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001470 18 - 190850796 CTAATCACTGACTCTAAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164846 18 - 15139346 CTAATCACTAACTCTAAC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948785 18 - 7304997 CTAATCATTGACTCTAAC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366822 18 - 11631747 CTAATCACTGACTCTAAC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1773313 18 + 3286835 CTAATTGCCCACCCTGAC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1862197 18 + 4188776 CTAATCACCGACCCTACC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8599825 18 + 8790067 ATAATTGCTAACCTTGAT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47972488 13 + 63241923 CTAATTGCTGACC----- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4087029 16 - 5279953 CCGATTGCTGACTCTA-- i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405135 120 + 151834684 I a score=4495224.000000 s hg38.chr4_KI270787v1_alt 45579 301 + 111943 TTAACCTTTCACATCTGGAGTCAATGCTTCC----------AGTATTAATATTAATTTGC-----TTGTGAACCTGCTTGTTTCGATTTCTT-TATTCCAAATGTGTTA--TTTTGTTGTTT--C-A--TGTCACATTCTAACTTCCTAAGGAGCTTT-CAA-AGCCTTGAGATCGGAAACCATGTCCTCCAGTTGTG------TTTTGTTTGTTTTTGTACTCTCTG-CATCCCATCTCCCAACTCTCCAAGAcagtttattttgag----ctatatatttctatcaattagcggatcatgaaatcagtttagtaagtctccta-ctaacatctcta s panTro5.chr4 119610619 301 - 194502333 TTAACCTTTCACATCTGGAGTCAATGCTTCC----------AGTATTAATATTAATTTGC-----TTGTGAACCTGCTTGTTTCGATTTCTT-TATTCCAAATGTGTTA--TTTTGTTGTTT--C-A--TGTCACATTCTAACTTCCTAAGGAGCTTT-CAA-AGCCTTGAGATTGGAAACCATGTCCTCCAGTTGTG------TTTTGTTTGTTTTTGTACTCTCTG-CATCCCATCTCCCCACTCTCCAAGAcagtttattttgag----ctatatatttctatcaattagcggatcatgaaatcaatttagtaagtctccta-ctaacatctcta i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024029 301 - 195804263 TTAACCTTTCACATCTGGAGTCAATGCTTCC----------AGTATTAATATTAATTTGC-----TTGTGAACCTGCTTGTTTCGATTTCTT-TATTCCAAATGTGTTA--TTTTGTTGTTT--C-A--TGTCACATTCTAACTTCCTAAGGAGCTTT-CAA-AGCCTTGAGATTGGAAACCATGTCCTCCAGTTGTG------TTTTGTTTGTTTTTGTACTCTCTG-CATCCCATCTCCCCACTCTCCAAGAcagtttattttgag----ctatatatttctatcaattagcggatcatgaaatcagtttagtaagtctccta-ctaacatctcta i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4455307 295 - 17550833 TTAACCTTTCACATATGGAGTCAATGCTTCT----------AG------TATTAATTTGC-----TTGTGAACCTGCTTGTTTTGATTTCTT-TATTCCAAATGTGTTA--TTTTGTTGTTT--C-A--TGTCACATTCTAACTTCCTAAGGAGCTTT-CAA-AGCCTTGAAATCGGAAACCATGTCCTCCAGTTGTG------TTTTGTTTGTTTTTGTACTCTCTG-CATCCCATCTCCCCACTCTCCAAGAcagtttattttgag----ctatatatttctatcaattagcggatcatgaaatcagtttagtaagtctccta-ctaacatctcta i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69328284 300 - 118206036 TTAACCTTTCACATCTGGAGTCAATGCTTCT----------AGTATTAATATTAATTTGC-----TTGTGAACCTGCTTGTTTTGATTTCTT-TATTCCAAATGTGTTA--TTTTGTTGTTT--C-A--GGTCACATTCTAACTT-CTAAGGAGATTT-CAA-AGCCTTGAAATCGGAAACCATGTCCTCCAGTTGTG------TTTTGTTTGTTTTTGTACTCTCTG-CGTCCCATCTCCCCAGTCTCCAGGAcagtttattttgag----ctatgtatttctatcaattagcggatcatgaaatcagtttagtaagtctccta-ctaacatctcta i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111531951 301 - 190429646 TTAACCTTTCACATCTGGAGTCAACGCTTCT----------AGTATTAATATTAATTTGA-----TTGTGAACCTGCTTGTTTTGATTTCTT-TATTCCAAATGTGTTA--TTTTGTTGTTT--T-A--TGTCACATTCTAACTTCCTAAGGAGCTTT-CAA-AGCCTTGAAATCGGAAACCATGTCCTCCAGTTGTG------TTTTGTTTGTTTTTGTACTCTCTG-CATCCCATCTCCCCAGTCTCCAAGACCATTTAttttgag----ctatgtatttctatcaattagcagatcacgaaatcagtttagtgagtctccta-ctaatatctcta i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700090 301 - 189454096 TTAACCTTTCACATCTGGAGTCAACGCTTCT----------AGTATTAATATTAATTTGA-----TTGTGAACCTGCTTGTTTTGATTTCTT-TATTCCAAATGTGTTA--TTTTGTTGTTT--T-A--TGTCACATTCTAACTTCCTAAGGAGCTTT-CAA-AGCCTTGAAATCGGAAACCATGTCCTCCAGTTGTG------TTTTGTTTGTTTTTGTACTCTCTG-CATCCCATCTCCCCAGTCTCCAAGACCATTTATTTTGAG----CTATGTATTTCTATCAattagcagatcacgaaatcagtttagtgagtctccta-ctaatatctcta i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268152 301 + 26754465 TTAACCTTTCACATCTGGAGTCAACGCTTCT----------AGTATTAATATTAATTTGA-----TTGTGAACCTGCTTGTTTTGATTTCTT-TATTCCAAATGTGTTA--TTTTGTTGTTT--T-A--TGTCACATTCTAACTTCCTAAGGAGCTTT-CAA-AGCCTTGAAATCGGAAACCATGTCCTCCAGTTGTG------TTTTGTTTGTTTTTGTACTCTCTG-CATCCCATCTCCCCAGTCTCCAAGACCATTTAttttgag----ctatgtatttctatcaattagcagatcacgaaatcagtttagtgagtctccta-ctaatatctcta i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4169421 301 - 5137665 TTAACCTTTCACATCTGGAGTCAACGCTGCT----------AGTATTAATATTAATTTGA-----TTGTGAACCTGCTTGTTTTGATTTCTT-TATTCCAAATGTGTTA--TTTTGTTGTTT--C-A--TGTCACATTCTAACTTCCCAAGGAGCTTT-CAA-AGCCTTGAAATTGGAAACCATGTCCTCCAGTTGTG------TTTTGTTTGTTTTTGTACTCTATG-CATCCCATCTCCCCAGTCTCCAAGACCGTTTAttttgag----ctatgtatttctatcaattagcagatcatgaaatcagtttagtgagtctccta-ctaatatctcta i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122884264 301 - 135778131 TTAACCTTTCACATCTGGAGTCAACGCTGCT----------AGTATTAATATTAATTTGA-----TTGTGAACCTGCTTGTTTTGATTTCTT-TATTCCAAATGTGTTA--TTTTGTTGTTT--C-A--TGTCACATTCTAACTTCCTAAGGAGCTTT-CAA-AGCCTTGAAATCGGAAACCATGTCCTCCAGTTGTG------TTTTGTTTGTTTTTGTACTCTCTG-CGTCCCATCTCCCCAGTCTCCAAGACCGTTTATTTTGAG----CTATGTATTTCTATCAattagcagatcacgaaatcagtttagtgagtctccta-ctaatatctcta i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986102 301 + 2427316 TTAACCTTTCACATCTGGAGTCAACGCTTCT----------AGTATTAATATTAATTTGA-----TTGTGAACCTGCTTGTTCTGATTTCTT-TATTCCAAATGTGTTA--TTTTGTTGTTT--C-A--TGTCACATTCTAACTTCCTAAGGAGCTTT-CAA-AGCCTTGAAATTGGAAACCATGTCCTCCAGTTGTG------TTTTGTTTGTTTTTGTACTCTATG-CATCCTATCTCCCCAGTCTCCAAGACCGTTTAttttgag----ctatgtatttctatcaattagcagatcacgaaatcagtttagtgagtctccta-ctaatatctcta i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279663 301 + 1448899 TTAACCTTTCACATCTGGAGTCAACGCTTCT----------AGTATTAATATTAATTTGA-----TTGTGAACCTGCTTGTTTTGATTTCTT-TATTCCAAATGTGTTA--TTTTGTTGTTT--C-A--TGTCACATTCTAACTTCCTAAGGAGCTTT-CAA-AGCCTTGAAATCGGAAACCATGTCCTCCAGTTGTG------TTTTGTTTGTTTTTGTACTCTCTG-CGTCCCATCTCCCCAGTCTCCAAGACCGTTTAttttgag----ctatgtatttctatcaattagcagaccatgaaatcagtttagtgagtctccta-ctaatatctcta i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001488 301 - 190850796 TTGATTTTTCACATCTGGAGTCAACATTTCT----------AGTATTAATACTGATTTGC-----TTGTGAACCTGCTTGTTTTGATTTATT-CACTCCAAATGTGTTA--TTTTGTTGTTT--C-A--TGTCACATTCTAACTTCCTAAGGAGTTTT-CAA-AGCCTTGAAATCAGAAGCCATGTCCTCCAGCTGTG------TTTGGTTTGTTTCTGTGCTCTCTG-CGTCCCATCTCCCCAGTCTCTAAGAcagtacattttgag----ctatgtatttctatcaattagcggatcatgaaatcagtttattaagcctcctg-ctaacatctcta i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8164864 301 - 15139346 TTGATTTTTCACATCTGGAGTCAACACTTCT----------AGTATGAATACTGATTTGT-----TTGTGAATCTGCTTGTTTTGATTTATT-CACTCCAAATGTGTAA--TTTTGTTGTTT--C-A--TGTCACATTCTAACTTCCTAAGGAGTTTT-CGA-AGCCTTGAAATCAGAAGCCTTGTCCTCCAGTTGTG------TTTGGTTTGTTCCTGTGCTCTCTG-AGTCCCATCTCCCCAGTCTCTAAGAcagtacattttaag----ctatgtatttctatcaattagcagattgtgaaatcagtttattaagtctccta-ctaacatctcta i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6948803 301 - 7304997 TTGATTTTTCACATCTGGAGTCAACACTTCT----------AGTATTAATACTGATTTGC-----TTGTGAACCTGCTTGTTTTGATTTATT-CACTCCAAATGTGTTA--TTTTGTTGTTT--C-A--TGTCACATTCTAACTTCCTAAGGAGTTTT-CGA-AGCCTTGAAATCAGAAGCCATGTCCTCCAGTTGTG------TTTGGTTTGTTTCTGTGCCCTCTG-CTTCCCATCTTCCCAGTCTCTAAGAcagtacattttgag----ctatgtatttctatcaattagcagatcatgaaatcagtttattaagtctccta-ctaacatctcta i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9366840 301 - 11631747 TTGATTTTTCGCATCTGGAGTCAACACTTCT----------AGTATTAATACTGATTTGC-----TTGTGAACCTGCTTGTTTTGATTTATT-CACTCCAAATGTGCTA--TTTTGTTGTTT--C-A--TGTCACATTCTAACTTCCTAAGGAGTTTT-CAA-AGCCTGGAAATCAGAAGCCATGTCCTCCAGTTGTG------TTTGGCTTCTTTCTGTGCTCTCTG-GGTCCCATCTCCCCAGTCTCTAAGAcagtacattttgag----ctatgtatttctatcaattagcggatcatgaaatcagtttattaagtctccta-ctaacatctcta i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1773331 309 + 3286835 TTAACTTTCCACATCCAGAGTCAAC-CTTCT----CTAACTTGTATTAACATTGGTTTGC-----CTGTTTACTTGCTTGTTTTGATTTATT-TACTCTAAATGTGTTG--TTTTGCTGTCTCCC-A--TGTTACATTCTAACTTCCTGAGGAGCTTT-CAGCCTCCCTGAAATCAGAAATAATATCCTTCAGTTGCG------TTGCTTTTGTTTTTGTACTCTCTT-TATCCCATCTACCCAATCTCTAAGAcagtacattttgag----ctatgaatttccatcaattagcagatcacaaaatcagcttagtaaatctccca-ccaacaccttta i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1862215 314 + 4188776 TTAACTTTTCACATATGGAGTCAACACTTCTCTAACTAACTTGTATTAACATTGATTTGC-----CTGTTAACTTGCTTGTTTTGATGTATT-TACTCTAAATGTGTTA--TTTTGTCATCTCCC-A--TGTTACATTCAAACTTCCTAAGGAGCTTT-CAGCCTCCCTGAAATCAGAAATCATATCCTTCAACTGCA------TTGTTTTTGTTTTTGTACTCTCTT-TATCCCATCTCCATAATCTCTAAGACAGTAGATTTTGGG----CTATGAATTTCTATCAattagcagatcacaaaatcagttcagtaaatctccta-ccaacatcctta i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8599843 286 + 8790067 TGAACTTT-CATACCCAAAGTCAACACTTCTATAACTAACTC-CATTAATATTGATTTGC-----CTGTTAATTTGATAATTTTGATTTATT-TACTCTAAATGTGTTA--TTTTGTTGTCTCAC-A--TTGT---------CTCTC-----AGCTTT-CAACATCCCTGAAATCAGAAATCATATCCTTCAATTGTG------TTG-TTTCATTTTTGTATTTTC-T-TATCCCATCTCCCCAATCTCTAAGACAGTGCATTTTGAG----CTATG----------Aattagcaaattacaaagtcagtttagtatgtctccta-ccaacatcttta i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76405255 285 + 151834684 TTAACTATCGATGCCTTGAGCCAACACTTTC----------AGAATTAACTTGTATTTGCATCAGTTATTTCTTCATTGGCTTTGATTTAAT-TCCGCTAAATGTGATA--TTTTATTGTCT--TGA--GATCACATTCCAATTTCCTAAA-AGCTTT-CGGTCTCCTTAAAGCCAGGAACCGTGTCCTCC-GTTGT-------TAATGTTGGCGATGGCACCGTCTT-CGACACACCGCTCCCATCTCTCGGAGAGTCTATAGTCAC----CCATTTGTTTCTACG--------------------AGTTCAGTAAATTTCCTA-CCAACATATTTA i mm10.chr5 I 120 C 0 s canFam3.chr13 47972501 322 + 63241923 TTAGCTATTCACATATCAAGCCAACACTTCTATAACCAACTTGTATTAATATTAATTTCC-----CTGTTAATCTGCTTGTTTCCATTTATTCTACTCTAAATGTGTTATGTTTGGTCGTTT--C-ACTTGTTACATTCCAACTTCCTATGGAGCTTTCCAA-CTCCTTAAAATCAGAAACCATGTCCTCCAGTCTTTTAGTCCTTTTTTTTTTTTTTTAACTCTCTT-TATTCCATCTCCCTCATCCCCAAGAcagtacattttaaa----ctatggcttcctatcaattaacagattatgaaagaaattta-taagtctccta-tcaacatcttta i canFam3.chr13 C 0 I 131 s dasNov3.JH568349 4087045 293 - 5279953 ----CTATTTACATCCTAAGCCAACACTCCC----------TGTGTTCATATTGATTTGC-----CTATTAATTTGCCT-TTTTAATTTATTCTGCTCTAAATGTGTTT--TTTTGTTGTTT--T-ACTTGTTACATTCTAACTTTCTAAAGAGCTTT-CAA---TCTTGAAATCAGAAACCATGCCC----------------TTTATTCTTTTTTTGCACTCTCTTCCATCCCATCTCTCCAAGCCCCGAATCAGTGTGTTTTAAGTAAACTATGGCTGTCTGTCAattagcagatcatgaaatcggtttagtaagtctcctacctaatatttata i dasNov3.JH568349 C 0 C 0 a score=2291029.000000 s hg38.chr4_KI270787v1_alt 45880 155 + 111943 aatgaaatagaattgaacctaagagaattgaaaacatgagagtgacagacgcatggtaagggcaagtatctttctgaaactc-tgacacagg--------------agtgtgcatcaggcta-----tgatataaaatatatttcat-actatgagttgtggtcaaaacagcttga s panTro5.chr4 119610920 155 - 194502333 aatgaaatagaatcgaacctaagagaattgaaaacatgagagtgacagacgcatggtaagggcaagtatctttctgaaactc-tgacacagg--------------agtgtgcatcaggcta-----tgatataaaatatatttcat-actatgagttgtggtcaaaacagcttga i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024330 155 - 195804263 aatgaaatagaatcgaacctaagagaattgaaaacatgagagtgacagacgcatggtaagggcaagtatctttctgaaactc-tgacacagg--------------agtgtgcatcaggcta-----tgatataaaatatatttcat-actatgagttgtggtcaaaacagcttga i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4455602 155 - 17550833 aatgaaatagaattgaacctaagagaactgaaaacatgagagtgacagacacatggtaagggcaagtatctttctgaaactc-tgacacagg--------------agtgtgcatcaggcta-----tgatataaaatatatttcat-actatgagttgtggtcaaaacagcttga i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69328584 155 - 118206036 aatgaaatagaattgaacctaagagaaccgaaaacatgagagtgacagatgcatggtaagggcaagtatctttctgaaactc-tgacacagg--------------catgtgcatcaggcta-----tgatataaaatatatttcat-actatgagttgtggtcaaaaaagcttga i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111532252 156 - 190429646 aatgaaatagaattgaacctaagagaattgaaaacatgagagtgacagatgcatggtaagggcaagtatctttctgaagctc-tgacacagg--------------agtgtgcatcaggcta-----tgatataaaatatatttcataactatgagttgtggtcaaaaaagcttga i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700391 156 - 189454096 aatgaaatagaattgaacctaagagaattgaaaacatgagagtgacagatgcatggtaagggcaagtatctttctgaagctc-tgacacagg--------------agtgtgcatcaggcta-----tgatataaaatatatttcataactatgagttgtggtcaaaaaagcttga i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268453 156 + 26754465 aatgaaatagaattgaacctaagagaattgaaaacatgagagtgacagatgcatggtaagggcaagtatctttctgaagctc-tgacacagg--------------agtgtgcatcaggcta-----tgatataaaatatatttcataactatgagttgtggtcaaaaaagcttga i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4169722 156 - 5137665 aatgaaatagaattgaacctaagagaattgaaaacatgagagtgacagatgcatggtaagggcaagtatctttctgaaactc-tgacacagg--------------agtgtgcatcaggcta-----tgatataaaatatatttcataactatgagttgtggtcaaaaaagcttga i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122884565 156 - 135778131 aatgaaatagaattgaacctaagagaattgaaaacatgagagtgacagatgcatggtaagggcaagtatctttctgaaactc-tgacacagg--------------agtgtgcatcaggcta-----tgatataaaatatatttcataactatgagttgtggtcaaaaaagcttga i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986403 156 + 2427316 aatgaaatagaattgaacctaagagaattgaaaacatgagagtgacagatgcatggtaagggcaagtatcgttctgaaactc-tgacacaag--------------agtgtgcatcaggcta-----tgatataaaatatatttcataactatgagttgtggtcaaaaaagcttga i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1279964 156 + 1448899 aatgaaatagaattgaacctaagagaactgaaaacatgagagtgacagatgcatggtaagggctagtatctttctgaaactc-tgacacagg--------------agtgtgcatcaggcta-----tgatataaaatatatttcataactatgagttgtagtcacaaaagcttga i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001789 155 - 190850796 aatgaaatagaattgaacctaagagaattgaaaacatgagaatgacagatgcatggtaagggaaagtatctttctgaaactc-tgacacagg--------------agtgtgcatcaggcta-----taacataaaatatatttcat-actatgagctgtggtcaaaaaagcttga i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8165165 155 - 15139346 aatgcaatagaattgatcctaagagaaccaaaaacatgagaatgacagatgcatggtaagggcaagtatctttctgaaactc-tgacacagg--------------agtgtgcatcaggcta-----taaagtaaaacatattttat-actatgagctgtggtcaaaaaagcttga i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949104 155 - 7304997 aatgaaatagaattgaacttaagagaaccaaaaacatgggaatgacagatgcatggtaagggcaagtatctttctgaaactc-tgacacagg--------------agtgtgcatcaggcta-----taacataaaatatatttcat-actatgagctgtggtcaaaaaagcttga i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367141 155 - 11631747 aatgaaatagaattgaacctaagagaaccgaaaacatgagaatgacagatgcatggtaagggcaagtatctctctgaaactc-tgacacggg--------------agtgtgcatcaggcta-----taatataaaatatatttcat-actatgagctgtggtcaaaaaagcttga i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1773640 150 + 3286835 aatgaaatagaactgaacctaagagaactgaaaataccagagtgcctcacccatggtaagggcaa-----gttctgaaactc-tgtcaaagg--------------ggtgtgtgtcagggta-----tgatatgaaatatatttctt-actatgagttgtggtgaaaaaagcttga i micMur3.chrUn_NW_017968520v1 C 0 I 24 s proCoq1.NW_012140747v1 1862529 152 + 4188776 aatgaaatagaattgaacttaagagaactgaaaatac--gagtgcctcacccatggtaagggcaactatcctgctgaaactt-ggacaaagg--------------ggtgtgtgttaggcca-----taatataaaatatatttctt-aatatgacctgtggt-caaaaagcttga i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8600129 153 + 8790067 aatgaaatagaattgaactgaagagaactgaaaatgc--cagggcctcacccagggtaagggcaagtatctttctgaaactc-tcactcaga--------------ggtagtttttaggtca-----tgatgcaaaacatatttctt-actatgagctgtgattaaaaaaccttga i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76405540 137 + 151834684 AGT-------CATTGGACTTACGAGAAGAGAAAATGCTAAAGCACCTAACCTAGTGCTGGGGCAAGGGTCTTCCTCAAACCC-TGACAT-----------------GGTGAGAGACAGGCTGGGCCTTGGTATAAGAAG----TTGT-ACTATGAAAAATGACCAGA--------- i mm10.chr5 C 0 C 0 s canFam3.chr13 47972954 166 + 63241923 aatgaaatagaattgaacctaagagaactgaaaattttggagtgcctcactcaaggtgaaggtaaggatctttgtaaaactcttgacacagtgagggctgtgtgtcaatgtgtgttaggcta-----agacataaaatgtagttctt----attaactgtggtcagaacacttgg- i canFam3.chr13 I 131 C 0 s dasNov3.JH568349 4087338 143 - 5279953 -----aatggagcagaagatcagagaactgaaaagatcagagtacattacccacagttagagcaagtatctttctgaaactc-tg-----gg--------------tgtgtaggt---gtta-----taatataaaacgtattgttttactgtgaatcatagtcagaaaagtGTAA i dasNov3.JH568349 C 0 C 0 a score=204412.000000 s hg38.chr4_KI270787v1_alt 46035 19 + 111943 gaaacacAGGTAAGGATGA---- s panTro5.chr4 119611075 19 - 194502333 gaaacacAGGTAAGGATGA---- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024485 19 - 195804263 gaaacacAGGTAAGGATGA---- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4455757 19 - 17550833 gaaacacGGGTAAGGATGA---- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69328739 19 - 118206036 GAAACATGGGTAAGGATGA---- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111532408 19 - 190429646 gaaacacAGGTAAGGATGA---- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700547 19 - 189454096 gaaacacAGGTAAGGATGA---- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268609 19 + 26754465 gaaacacAGGTAAGGATGA---- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4169878 19 - 5137665 gaaacacAGGTAAGGATGA---- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122884721 19 - 135778131 gaaacacAGGTAAGTATGA---- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986559 19 + 2427316 gaaacacAGGTAAGGATGA---- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280120 19 + 1448899 gaaacacGGGTAAGGATGA---- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001944 19 - 190850796 gaaacaTGGCTAAGGATGA---- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8165320 19 - 15139346 gaaacaTGGCTAAGGATGA---- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949259 19 - 7304997 gaaacaTGGCTAAGGACGA---- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367296 19 - 11631747 GAAACATGGCTAAGGATGA---- i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1862681 18 + 4188776 GAAACATGGCCCGGGAC-T---- i proCoq1.NW_012140747v1 C 0 I 5 s otoGar3.GL873602 8600282 19 + 8790067 gagacaGGGACCAGAGTGT---- i otoGar3.GL873602 C 0 I 5 s mm10.chr5 76405677 19 + 151834684 GAAATCTAGCCACCAATTG---- i mm10.chr5 C 0 I 4 s canFam3.chr13 47973120 19 + 63241923 gaagcATTGTCAGATATTT---- i canFam3.chr13 C 0 I 4 s dasNov3.JH568349 4087481 23 - 5279953 GAAACATAGCCAGGGATTTACTA i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1773790 24 + 3286835 I a score=1243922.000000 s hg38.chr4_KI270787v1_alt 46054 80 + 111943 AACATCTGCCTGAAGCAAGAGATTTACCTTGTGCAAATTTATTTGGGT--CCCCCTAGCATTTGCTCCCAGATTCCTGGC----TT s panTro5.chr4 119611094 80 - 194502333 AACATCTGCCTGAAGCAAGAGATTTACCTTGTGCAAATTTATTTGGGT--CCCCCTAGCATTTGCTCCCAGATTCCTGGC----TT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024504 80 - 195804263 AACATCTGCCTGAAGCAAGAGATTTACCTTGTGCAAATTTATTTGGGT--CCCCCTAGCATTTGCTCCCAGATTCCTGGC----TT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4455776 80 - 17550833 AACATCTGCCTGAAGCAAGAGAGTTACCTTGTGCAAATTTATTTGGGT--CCCCCTAGCATTTGCTCTCAGATTCCCAGC----TT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69328758 80 - 118206036 AACATCTGCCTGAAGCAAGAGAGTTACCTTGTGCAAATTTATTTGGGT--CCCCCTAGCATTTGCTCCCATATTCCTGGC----TT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111532427 80 - 190429646 AACATCTGCCTGAAGCAAGAGAGTTACCTTGTGAAAATTTATTTGGGT--CCCCCTAGCATTTGCTCCCAGATTCCTGGG----TT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700566 80 - 189454096 AACATCTGCCTGAAGCAAGAGAGTTACCTTGTGCAAATTTATTTGGGT--CCCCCTAGCATTTGCTCCCAGATTCCTGGG----TT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268628 80 + 26754465 AACATCTGCCTGAAGCAAGAGAGTTACCTTGTGCAAATTTATTTGGGT--CCCCCTAGCATTTGCTCCCAGATTCCTGGG----TT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4169897 80 - 5137665 AACATCTGCCTGAAGCAAGAGAGTTACCTTGTGCAAATTTATTTGGGT--CCCCCTAGCATTTGCTCCCAGATTCCTGGG----TT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122884740 80 - 135778131 AACATCTGCCTGAAGCAAGAGAGTTACCTTGTGCAAATTTATTTGGGT--CCCCCTAGCATTTGCTCCCAGATTCCTGGG----TT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986578 80 + 2427316 AACATCTGCCTGAAGCAAGAGAGTTACCTTGTGCAAATTTATTTGGGT--CCCCCTAGCATTTGCTCCCAGATTCCTGGG----TT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280139 80 + 1448899 AACATCTGCCTGAAGCAAGAGAGTTACCTTGTGCAAATTTATTTGGGT--CCCCCTAGCATTTGCTGCCAGATTCCTGGG----TT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53001963 79 - 190850796 AACATCTGCCTGAAGCAAGAGAGTTGCCTAGTGCAAATTTATTTGGGT---CCCGTAGCATTTGCTCCCAGATTCCTGGT----TT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8165339 79 - 15139346 AACATCTGGCCGAAGCAAGAGAGTTACCTAGTGCAAATTTATTTGGGT---CCCCTACCATTTGCTCCCAGATTCCTGGT----TT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949278 77 - 7304997 AATATCTGTCTGAAGT--GAGAGTTACCTAGTGCAAATTTATTTGGGT---CCCCTAGCATTTGCTCCCAGATTCCTGGT----TT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367315 79 - 11631747 AACATCTGCCTGAAGCCAGAGAGTTACCTAGTGCAAATTTATTTGGGT---CCCCTAGCATTTGCTCCCAGATTCCTGGT----TT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1773814 83 + 3286835 AACATCTGCCTGAAGCAATAAAATTACCTTTTGCAAATTTATCTGGAT---CCCCTAGCATTTGCTCCCAGATTCTTGGCTCATTT i micMur3.chrUn_NW_017968520v1 I 24 C 0 s proCoq1.NW_012140747v1 1862704 83 + 4188776 AACATCTGTCTGAAGCACGAAAATTACCTTTTGCAAATTTATTTGGAT---CCCCTAGAATTTGCTCCCAGATTCTTGACTTATTT i proCoq1.NW_012140747v1 I 5 C 0 s otoGar3.GL873602 8600306 83 + 8790067 AACATCTGCCTGAAGTAAGAAAAATAACTTTTACAAATTTATTTGCAT---CCCCTAACATTTGTTCTCAGACTCCTGGCTTATTT i otoGar3.GL873602 I 5 C 0 s mm10.chr5 76405700 81 + 151834684 CTCATTTGCTTCAAGATAGAAAG-CACCTTGTACAGATTTACTCTCATTCCCCCTTAGCACTTGTTTCTAGATTGCTAGT----TT i mm10.chr5 I 4 I 519 s canFam3.chr13 47973143 69 + 63241923 AATATTTGCCTGAA-----------ACCTTTTACAAATTTATTTGGAT--CCCCCTAGCAGTTGTTCCCAGGTTCCTGAC----TT i canFam3.chr13 I 4 I 4 s dasNov3.JH568349 4087504 74 - 5279953 AACATTTGCCCTAAACAAGAAAATTACCCTTTGCAAATTTATTTGGAT--CCCTTTAGCAGTTGCTCCCAGAGCTC---------- i dasNov3.JH568349 C 0 C 0 a score=1327873.000000 s hg38.chr4_KI270787v1_alt 46134 92 + 111943 TAGTTTGGCTTTTGGTGTCA-CC-CAGTTGGCTCCAACCATTACCCAGGTGACCTCTCAG-GTTGGATCCTGCTTGCCCCTTGG---ATTGCAGGCTG s panTro5.chr4 119611174 92 - 194502333 TAGTTTGGCTTTTGGTGTCA-CC-CAGTTGGCTCCAACCATTACCCAGGTGACCTCTCAG-GTTGGATCCTGCTTGCCCCTTGG---ATTGCAGGCTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024584 92 - 195804263 TAGTTTGGCTTTTGGTGTCA-CC-CAGTTGGCTCCAACCATTACCCAGGTGACCTCTCAG-GTTGGATCCTGCTTGCCCCTTGG---ATTGCAGGCTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4455856 92 - 17550833 TAGTTTGGCTTTTGGTGTCA-CC-CAGTTGGCTCCAACCATTACCCAGGTGACCTCTCAG-GTTGGAGCCTGCTTGCCCCTTGG---ATTGCAGGCTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69328838 92 - 118206036 TAGTTAGGCTTTTGGTGTCA-TC-CGGTTGGCTCCAAGCATTACCCAGGTGACCTCTCAG-GTTGGACCCTGCTTGCCCCTTGG---ATTGCAGGCTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111532507 92 - 190429646 TAGTTTGGCTTTTGGTGTCA-CC-CAGTTGGCTCCAAGCATTACCCAGGTGACCTCTCAG-GTTGGATCCTGCTTGCCCCTTGG---ATTGCAGGCTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700646 92 - 189454096 TAGTTTGGCTTTTGGTGTCA-CC-CAGTTGGCTCCAAGCATTACCCAGGTGACCTCTCAG-GTTGGATCCTGCTTGCCCCTTGG---ATTGCAGGCTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268708 92 + 26754465 TAGTTTGGCTTTTGGTGTCA-CC-CAGTTGGCTCCAAGCATTACCCAGGTGACCTCTCAG-GTTGGATCCTGCTTGCCCCTTGG---ATTGCAGGCTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4169977 92 - 5137665 TAGTTTGGCTTTTGGTGTCA-CC-CAGTTGGCTCCAAGCATTACCCAGGTGACCTCTCAG-GTTGGATCCTGTTTGCCCCTTGG---ATTGCAGGCTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122884820 92 - 135778131 TAGTTTGGCTTTTGGTGTCA-CC-CAGTTGGCTCCAAGCATTACCCAGGTGACTTCTCAG-GTTGGATCCTGCTTGCCCCTTGG---ATTGCAGGCTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986658 92 + 2427316 TAGTTTGGCTTTTGGTGTCA-CC-CAGTTGGCTCCAAGCATTACTCAGGTGACCTCTCAG-GTTGGATCCTGCTTGCCCCTTGG---ATTGCAGGCTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280219 92 + 1448899 TAGTTTGGCTTTTGGTGTCA-CC-CAGTTGGCTCCAAGCATTACCCAGGTGACCTCTCAG-GTTGGATCCTGCTTGCCATTTGG---GTTGCAGGCTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002042 93 - 190850796 TAGTTTGGCTTTTGGTGTCA-CC-CAATTGGCTCCAGGCATTACCCAGGTGACTTCTCAATGTTAGATCCTGCTTGCCCCTTGG---ATTGCAGGCTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8165418 93 - 15139346 TAGTTTGGCTTTTGATGTCA-CC-CAGTTGGCTGCAAGCATTATCCAGGTGACCTCTCAACGTTAGATCCTGCTTGCCCCTTGG---ATTGCAGGCTG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949355 93 - 7304997 TAGTTTGGCTTTTGGTGTCA-CC-CAGTTGGCTCCAAGCATAACCCAGGTGACTTCTCAACATTAGATCCTGCTTGCCCCTTGG---ATTGCTGGCTG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367394 93 - 11631747 TAGTTTGGCTTTTGGTGTCA-CC-CAATTGGCTCCAAGCATTACCCAGGTGACTTCTCAATGTTAGATCCCACTTGCCCCTTGG---ATTGCAGGCTG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1773897 91 + 3286835 CCCTTAGGCTTTTGATGTCA-GC-CACTTGGCTCCAAGCATCACTGA-GTGACCTCCCAG-ATTGGACCCTGCCTGTCCCTTGG---ATCGCAGGCTG i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1862787 91 + 4188776 CCCTTAGGCTTTTGATGTCA-GC-CAGTTGGCTCCAAGGATCACCGA-GTGACCTCCCAG-ATTGGACCTTGCCTGTCCCTTGG---ATCGCAGGCTG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8600389 90 + 8790067 CCCTTAGGCTTTTGATGGCA-GC-CAGTTGGCTCTGAGCACCAATGA-GTGACCTCCTAG-ATTAGATCCCGCTTGTCCCTTGG---ATTGTA-GCTG i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47973216 95 + 63241923 CCCTTTGGCTTTTGCTATGATTT-TCCTTGGTTCCAAGTGTCACCAA-ATGACCTCCCAT-TTTCGGCTCTCCCTGCTGCTTGGATCATCACAGGTTG i canFam3.chr13 I 4 C 0 s dasNov3.JH568349 4087578 91 - 5279953 ACGTTTGGTTTTTGATCTCA-CCTTTGTAGGCTCCAAGTACTGCCTA-ATGACCTCCCAG-ATTAGACCCTGCCTATT-CTTGG---ACTTCAGGCTA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76405781 519 + 151834684 I a score=354778.000000 s hg38.chr4_KI270787v1_alt 46226 30 + 111943 ACCTCAGCATGCTGCTGTTCACACTGA--CCC s panTro5.chr4 119611266 30 - 194502333 ACCTCAGCATGCTGCTGTTCACACTGA--CCC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024676 30 - 195804263 ACCTCAGCATGCTGCTGTTCACACTGA--CCC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4455948 30 - 17550833 ACCTCGGCTTGCTGCTGTTCACACTGA--CCC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69328930 30 - 118206036 ACCTCAGCATGTTGCTGTTCACACTGA--CCC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111532599 30 - 190429646 ACCTTGGCATGCTACTGTTCACACTGA--CCC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700738 30 - 189454096 ACCTTGGCATGCTACTGTTCACACTGA--CCC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268800 30 + 26754465 ACCTTGGCATGCTACTGTTCACACTGA--CCC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170069 30 - 5137665 ACCTTAGCATGCTACTGTTCACACTGA--CCC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122884912 30 - 135778131 ACCTTGGCATGCAACTGTTCACACTGA--CCC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986750 30 + 2427316 ACCTTAGCATGCTACTGTTCACACTGA--CCC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280311 30 + 1448899 ACCTTGGCGTGCTACTGTTCACACTGA--CCC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002135 30 - 190850796 ACCGCAGCATGCTGCTGTTCACGTTGA--CCC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8165511 32 - 15139346 ACATCGGCATGCTGCTGTTCACGCTAACGCCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949448 30 - 7304997 ACCTCGGCATGCTGCTGTTCACGCTTA--CCC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367487 30 - 11631747 ACCTCAGCATGCTGCTGTTCATGCTGA--CCC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1773988 29 + 3286835 G-CCTTGCATGCAGCTGTCCACATTGA--GCC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1862878 30 + 4188776 ACCCCTACATGCAGCTGTCCACATTGA--CCC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8600479 23 + 8790067 TCCCCTGCATGCTGCTGTCCA---------CC i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47973311 30 + 63241923 ACGCCTGCGCACTGCCATCCACATTGA--CCC i canFam3.chr13 C 0 C 0 e mm10.chr5 76405781 519 + 151834684 I e dasNov3.JH568349 4087669 0 - 5279953 C a score=50443.000000 s hg38.chr4_KI270787v1_alt 46256 5 + 111943 -TATAC s panTro5.chr4 119611296 5 - 194502333 -TATAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024706 5 - 195804263 -TATAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4455978 5 - 17550833 -TACAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69328960 5 - 118206036 -TATAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111532629 5 - 190429646 -TGTAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700768 5 - 189454096 -TGTAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268830 5 + 26754465 -TGTAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170099 5 - 5137665 -TATAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122884942 5 - 135778131 -TATAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986780 5 + 2427316 -TATAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280341 5 + 1448899 -TATAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002165 6 - 190850796 ATATAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8165543 6 - 15139346 ATACAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949478 6 - 7304997 CTATAC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367517 6 - 11631747 CTGTAC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1774017 5 + 3286835 -TATAC i micMur3.chrUn_NW_017968520v1 C 0 I 15 s proCoq1.NW_012140747v1 1862908 5 + 4188776 -TACAC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8600502 4 + 8790067 -TATA- i otoGar3.GL873602 C 0 C 0 e mm10.chr5 76405781 519 + 151834684 I e dasNov3.JH568349 4087669 0 - 5279953 C e canFam3.chr13 47973341 0 + 63241923 C a score=262908.000000 s hg38.chr4_KI270787v1_alt 46261 21 + 111943 ACCTTGGTCTCGAAACTTTCT s panTro5.chr4 119611301 21 - 194502333 ACCTTGGTCTCAAAACTTTCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024711 21 - 195804263 ACCTTGGTCTCAAAACTTTCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4455983 21 - 17550833 ACCTTGGTCTCGAAACTTTCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69328965 21 - 118206036 ATCTTGGTCTCGAAACTTTCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111532634 21 - 190429646 ACCTTGGTCTCGAAACTTTCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700773 21 - 189454096 ACCTTGGTCTCGAAACTTTCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268835 21 + 26754465 ACCTTGGTCTCGAAACTTTCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170104 21 - 5137665 ACCTTGGTCTCGAAACTTTCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122884947 21 - 135778131 ACCTTGGTCTCGAAACTTTCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986785 21 + 2427316 ACCTTGGTCTCGAAACTTTCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280346 21 + 1448899 ACCTTGGTCTCGAAACTTTCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002171 21 - 190850796 ACCTTGGCCTTGAAACTTTCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8165549 21 - 15139346 ACCTTGGTCTTGAAACTTTCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949484 21 - 7304997 ACCTTGGTGTTGAAACTTTCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367523 21 - 11631747 ACCTTGGTCTTGAAACTTTCT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1862913 20 + 4188776 -CCCTGGTCTCAAACCCTTCT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8600506 19 + 8790067 --CTTGGTCTCAAACCCTTCT i otoGar3.GL873602 C 0 I 50 e micMur3.chrUn_NW_017968520v1 1774022 15 + 3286835 I e mm10.chr5 76405781 519 + 151834684 I e dasNov3.JH568349 4087669 0 - 5279953 C e canFam3.chr13 47973341 0 + 63241923 C a score=84802.000000 s hg38.chr4_KI270787v1_alt 46282 7 + 111943 GCCCCAT s panTro5.chr4 119611322 7 - 194502333 GCCCCAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024732 7 - 195804263 GCCCCAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456004 7 - 17550833 GCCCCAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69328986 7 - 118206036 GTCCCAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111532655 7 - 190429646 GCCCCAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700794 7 - 189454096 GCCCCAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268856 7 + 26754465 GCCCCAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170125 7 - 5137665 GCCCCAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122884968 7 - 135778131 GCCCCAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986806 7 + 2427316 GCCCCAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280367 7 + 1448899 GCCCCAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002192 7 - 190850796 GTCCCAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8165570 7 - 15139346 GTCCCAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949505 7 - 7304997 GTCCCAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367544 7 - 11631747 GTCCCAT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1862933 7 + 4188776 GCCCCAT i proCoq1.NW_012140747v1 C 0 I 61 e micMur3.chrUn_NW_017968520v1 1774022 15 + 3286835 I e mm10.chr5 76405781 519 + 151834684 I e dasNov3.JH568349 4087669 0 - 5279953 C e otoGar3.GL873602 8600525 50 + 8790067 I e canFam3.chr13 47973341 0 + 63241923 C a score=452237.000000 s hg38.chr4_KI270787v1_alt 46289 53 + 111943 ATTA---t----------------ttttttatattttgagatggagtcttgctctgtcacccaggctggagt s panTro5.chr4 119611329 53 - 194502333 ATTA---t----------------ttttttatattttgagatggagtcttgctctgtcacccagtctggagt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024739 53 - 195804263 ATTA---t----------------ttttttatattttgagatggagtcttgctctgtcacccagtctggagt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456011 53 - 17550833 ATTA---t----------------ttttttatattttgagatggagtcttgctctgtcacccaggctggagt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69328993 56 - 118206036 ATTAtttt----------------ttttttctattttgagatggagtctcactctgtcacccaggctggagt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111532662 53 - 190429646 ATTA---t----------------ttttttatgttttaagacagagtctcgctctgtcacccaggctggagt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700801 53 - 189454096 ATTA---t----------------ttttttatgttttaagacagagtctcgctctgtcacccaggctggagt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268863 53 + 26754465 ATTA---t----------------ttttttatgttttaagacagagtctcgctctgtcacccaggctggagt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170132 53 - 5137665 ATTA---t----------------ttttttatgttttaagacagagtctcactctgtcacccaggctggagt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122884975 53 - 135778131 ATTA---t----------------ttttttatgttttaagacagagtcttgctctgtcacccaggctggagt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986813 53 + 2427316 ATTA---t----------------ttttttatgttttaagacagagtctcgctctgtcacccaggctggagt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280374 53 + 1448899 ATTA---C----------------ttttttatgttttaagacagagtctcgctctgtcacccaggctggagt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002199 69 - 190850796 Aata---tatatatatatatatatattttttttttttgagacagagtatcactctgtcgcctaggctagagt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8165577 58 - 15139346 AATA---t-----------tttttttttttattttttgagacagagtgttactctgtcgtccaggctagagt i saiBol1.JH378162 C 0 I 233 s cebCap1.NW_016107439v1 6949512 55 - 7304997 AATA---T--------------Gtttttttattttttgagacagagtatcactctgttgcccaggctagagt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367551 55 - 11631747 AATA---T--------------Atttttttattttttgagacagagtatcactttgtcgcccaggctagagt i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1862940 61 + 4188776 I e micMur3.chrUn_NW_017968520v1 1774022 15 + 3286835 I e mm10.chr5 76405781 519 + 151834684 I e dasNov3.JH568349 4087669 0 - 5279953 C e otoGar3.GL873602 8600525 50 + 8790067 I e canFam3.chr13 47973341 0 + 63241923 C a score=49944.000000 s hg38.chr4_KI270787v1_alt 46342 11 + 111943 gaagtggcgtg s panTro5.chr4 119611382 11 - 194502333 gaagtggcgtg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024792 11 - 195804263 gaagtggcgtg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456064 11 - 17550833 gaagtggcgtg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69329049 11 - 118206036 gaagtggtgcg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111532715 11 - 190429646 gaaggggcaca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700854 11 - 189454096 gaaggggcaca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268916 11 + 26754465 gaaggggcaca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170185 11 - 5137665 gaaggggcgca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122885028 11 - 135778131 gaagggccgca i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986866 11 + 2427316 gaaggggcgca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280427 11 + 1448899 gaaggggtgca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002268 11 - 190850796 acagtcacaca i calJac3.chr3 C 0 C 0 s cebCap1.NW_016107439v1 6949567 11 - 7304997 atagtcacaca i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367606 11 - 11631747 acagtcacaca i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1862940 61 + 4188776 I e micMur3.chrUn_NW_017968520v1 1774022 15 + 3286835 I e mm10.chr5 76405781 519 + 151834684 I e dasNov3.JH568349 4087669 0 - 5279953 C e saiBol1.JH378162 8165635 233 - 15139346 I e otoGar3.GL873602 8600525 50 + 8790067 I e canFam3.chr13 47973341 0 + 63241923 C a score=215071.000000 s hg38.chr4_KI270787v1_alt 46353 21 + 111943 atctcgactcactgcaacctc s panTro5.chr4 119611393 21 - 194502333 atctcgactcactgcaacctc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024803 21 - 195804263 atctcgactcactgcaacctc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456075 21 - 17550833 atctcgactcactgcaacctc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69329060 21 - 118206036 atctcgactcactgaaacctc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111532726 21 - 190429646 atcacgactcactacaacctc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700865 21 - 189454096 atcacgactcactgcaacctc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268927 21 + 26754465 atcacgactcactgcaacctc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170196 21 - 5137665 atcacgactcactgcaacctc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122885039 21 - 135778131 atcacgactcactgcaacctc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986877 21 + 2427316 atcacgactcactgcaacctc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280438 21 + 1448899 atcacaactcactgcaacctc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002279 21 - 190850796 atcttgactcactacaacctc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8165868 21 - 15139346 atctcgactcactgcaacctc i saiBol1.JH378162 I 233 C 0 s cebCap1.NW_016107439v1 6949578 21 - 7304997 gtctcgactcactgcaacctc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367617 21 - 11631747 atctcgactcactgcaacctc i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1862940 61 + 4188776 I e micMur3.chrUn_NW_017968520v1 1774022 15 + 3286835 I e mm10.chr5 76405781 519 + 151834684 I e dasNov3.JH568349 4087669 0 - 5279953 C e otoGar3.GL873602 8600525 50 + 8790067 I e canFam3.chr13 47973341 0 + 63241923 C a score=318324.000000 s hg38.chr4_KI270787v1_alt 46374 32 + 111943 cgcctcccgggttcaaacgattctcctgcctc s panTro5.chr4 119611414 32 - 194502333 cgcctcccgggttcaaacgattctcctgcctc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024824 32 - 195804263 cgcctcccgggttcaaacgattctcctgcctc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456096 32 - 17550833 tgcctcctgggttcaaacgattctcctgcctc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69329081 32 - 118206036 cgcctcccgggttcaagcgagtctcctgcctc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111532747 32 - 190429646 cgcctcccgggttcaagcgattctcctgcctc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700886 32 - 189454096 cgcctcccgggttcaagcgattctcctgcctc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268948 32 + 26754465 cacctcccgggttcaagcaattctcctgcctc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170217 32 - 5137665 cgcctcccgggttcaagcgattctcctgcctc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122885060 32 - 135778131 cgcctcccgggttcaagcgattctcctgcctc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986898 32 + 2427316 cgccacccgggttcaagcgattctcttgcgtc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280459 32 + 1448899 tgcttcccaggttcaagcgattctcctgcctc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002300 32 - 190850796 agcctcccaggttcaagcaattctcctgcctc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8165889 32 - 15139346 agcctcccaggttcaagcaattctcctgcctc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949599 32 - 7304997 agcctcccaggttcaagtaattctcctgcctc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367638 32 - 11631747 agcctcccaggttcaagcgatactcctgcctc i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4087669 16 - 5279953 TGCCTCCC----------------CCCACCCC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1862940 61 + 4188776 I e micMur3.chrUn_NW_017968520v1 1774022 15 + 3286835 I e mm10.chr5 76405781 519 + 151834684 I e otoGar3.GL873602 8600525 50 + 8790067 I e canFam3.chr13 47973341 0 + 63241923 C a score=129132.000000 s hg38.chr4_KI270787v1_alt 46406 12 + 111943 agcctcccgagt s panTro5.chr4 119611446 12 - 194502333 agcctcccgagt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024856 12 - 195804263 agcctcccgagt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456128 12 - 17550833 agcctcccgagt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69329113 12 - 118206036 agcctcccgagt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111532779 12 - 190429646 agcctcccgagt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700918 12 - 189454096 agcctcccgagt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268980 12 + 26754465 agcctcccgagt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170249 12 - 5137665 agcttcccgagt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122885092 12 - 135778131 agcctcccgagt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986930 12 + 2427316 agcctcccgagt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280491 12 + 1448899 agcctcccgagt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002332 12 - 190850796 agcctcccaagt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8165921 12 - 15139346 agcctcccaagt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949631 12 - 7304997 agcctcccaagt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367670 12 - 11631747 agcctcccaggt i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47973341 12 + 63241923 AGCCTGCCGGAT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4087685 1 - 5279953 A----------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1862940 61 + 4188776 I e micMur3.chrUn_NW_017968520v1 1774022 15 + 3286835 I e mm10.chr5 76405781 519 + 151834684 I e otoGar3.GL873602 8600525 50 + 8790067 I a score=1199357.000000 s hg38.chr4_KI270787v1_alt 46418 124 + 111943 agctgggactacaggtgtgcgccaccgtgcctggctaatttttgtatttttagtagggacagggtttcgccatgttggccaggctggtctcaaactcctgacctcaggtgattagcccgccttg s panTro5.chr4 119611458 124 - 194502333 agctgggactacaggtgtgcgccaccatgcctggctaatttttgtatttttagtagggacagggtttcgccatgttggccaggctggtctcaaactcctgacctcaggtgattagcccgccttg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024868 124 - 195804263 agctgggactacaggtgtgcgccaccatgcctggctaatttttgtatttttagtagggacagggtttcgccatgttggccaggctggtctcaaactcctgacctcaggtgattagcccgccttg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456140 124 - 17550833 agctgggactacaggtgtgcgccaccatgcctggctaatttttgtatttttagcagggacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgattagcccgccttg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69329125 124 - 118206036 agctgggactacaggtgtgtgccaccatgcccgactaatttgtgtatttttagtagggacagggttttgccatgctggccaggctggtctcaaactcctgacctcaggtgatcagcccaccttg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111532791 124 - 190429646 agctgggactacaggtgtgcgccaccatgcccagctaatttttgcatttttagtggggacagggtttcgccatgttggccaggctggtctcaaactcctgacctcaggtgatcagcccacctca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110700930 124 - 189454096 agctgggactacaggtgtgcgccaccatgcccagctaatttttgcatttttagtggggacagggtttcgccatgttggccaggctggtctcaaactcctgacctcaggtgatcagcccacctca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13268992 124 + 26754465 agctgggactacaggtgtgcgccaccatgcccagctaatttttgcatttttagtggggacagggtttcgccatgttggccaggctggtctcaaactcctgacctcaggtgatcaacccacctca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170261 124 - 5137665 agctgggactacaggtgtgtgccaccatgcccagctaagttttgcatttttagtggggacagggtttcgccatgttggccaggctggtctctaactcctgacctcaggtgatcagcccgcctca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122885104 124 - 135778131 agctgggactacaggtgtgcgccaccatgcccagctaatttttgcatttttagtggggacagggttttgccatgttggccaggctggtctcaaactcctgacctcaggtgatcagaccgcctca i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1986942 124 + 2427316 agctgggactacaggtgtgcgccaccatgcccagctaatttttgcatttttagtggggacagggtttcgccatgttggccaggctggtctctaactcctgacctcaggtgatcagcccgcctca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280503 124 + 1448899 agctgggactacaggtgtgcgccaccatgcccagataatttatgtatttttagtagggacagggtttcgccatgttggccaggctgatctcaaactcctgacctcaggtgatcagcccgcctca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002344 124 - 190850796 agctgggattacaggcttgtgtcaccatgtccagctaatttttgtatttttagtagagacagggttttgccacgttggccaggcttgtctcgaactcctgacctcaggtgatcagcttgcctcg i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8165933 123 - 15139346 agctgggattacaggcatgtgtcaccatgcccagctaatttttata-ttttagtagacacagggttttgccatgttggccagggtggtctcgaactcctgacctcaggtaatcagtttgccttg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949643 124 - 7304997 agctgggattacaggcatgtgtcaccatgcccagctaacttttgtatttttagtagagacaagatttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatcagcttgccttg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367682 124 - 11631747 agctgggattacaggcatgtgtcaccatgcccagctaatttttgtattttcagtggagacagggtttcgccatgttggccaggctggtctcgaactcctgacctcaggtgatcagcttgccttg i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4087686 38 - 5279953 ---------------------CCAACATGC------------------------------------------TGCTGTCCACACTGACCCTTCACATCTTA----------------------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1862940 61 + 4188776 I e micMur3.chrUn_NW_017968520v1 1774022 15 + 3286835 I e mm10.chr5 76405781 519 + 151834684 I e otoGar3.GL873602 8600525 50 + 8790067 I e canFam3.chr13 47973353 0 + 63241923 C a score=335262.000000 s hg38.chr4_KI270787v1_alt 46542 37 + 111943 gcctcctaaagtgccgggattacaggcataagccact s panTro5.chr4 119611582 37 - 194502333 gcctcctaaagtgccgggattacaggcataagccact i panTro5.chr4 C 0 C 0 s panPan2.chr4 121024992 37 - 195804263 gcctcctaaagtgccgggattacaggcataagccact i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456264 37 - 17550833 gcctcctaaagtgccgggattacaggcataagccact i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69329249 37 - 118206036 gcctcctaaagtgccaggattacaggcataagccacT i nomLeu3.chr9 C 0 M 100 s rheMac8.chr5 111532915 37 - 190429646 gcttcctaaaatgccgggattacaggcataagccact i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110701054 37 - 189454096 gcttcctaaaatgccgggattacaggcataagccact i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13269116 37 + 26754465 gcttcctaaaatgccaggattacaggcataagccact i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170385 37 - 5137665 gcttcctaaaatgccgggattacaggcattagccact i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122885228 37 - 135778131 gcttcctaaaatgccgggattacaggcataagccact i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1987066 37 + 2427316 gcttcctaaaatgccgggattacaggcattagccact i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280627 37 + 1448899 gcttcctaaaatgccgggattacaggcataagccact i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002468 37 - 190850796 atctcccaaagtgctgggattacaggcaaaagctgct i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8166056 37 - 15139346 gcctcccaaagtgctgggattacaggcaaaagctgcc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949767 37 - 7304997 gtctcccaaagtgctgggattacaggcaaaagctgcc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367806 37 - 11631747 gcctcccaaagtgctgggattacaggcaaaagctgcc i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47973353 13 + 63241923 GCCTCTTGA------------------------CACT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4087724 6 - 5279953 GCCTCC------------------------------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1862940 61 + 4188776 I e micMur3.chrUn_NW_017968520v1 1774022 15 + 3286835 I e mm10.chr5 76405781 519 + 151834684 I e otoGar3.GL873602 8600525 50 + 8790067 I a score=96358.000000 s hg38.chr4_KI270787v1_alt 46579 10 + 111943 gcacccggcc s panTro5.chr4 119611619 10 - 194502333 gcacccggcc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121025029 10 - 195804263 gcacccggcc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456301 10 - 17550833 gcacccggcc i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111532952 10 - 190429646 gcacccggcc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110701091 10 - 189454096 gcacccggcc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13269153 10 + 26754465 gcacccggcc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170422 10 - 5137665 gcacccggcc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122885265 10 - 135778131 gcacccggcc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1987103 10 + 2427316 gcacccggcc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280664 10 + 1448899 gcacccggcc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002505 10 - 190850796 gtacccggcc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8166093 10 - 15139346 gcaaccggcc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949804 10 - 7304997 acacccggcc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367843 10 - 11631747 gcacccggcc i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47973366 9 + 63241923 -CTTTCCTCC i canFam3.chr13 C 0 I 1 e proCoq1.NW_012140747v1 1862940 61 + 4188776 I e micMur3.chrUn_NW_017968520v1 1774022 15 + 3286835 I e mm10.chr5 76405781 519 + 151834684 I e dasNov3.JH568349 4087730 0 - 5279953 C e otoGar3.GL873602 8600525 50 + 8790067 I e nomLeu3.chr9 69329286 100 - 118206036 M a score=188666.000000 s hg38.chr4_KI270787v1_alt 46589 21 + 111943 TCTGCCCCACATTATACCGGA s panTro5.chr4 119611629 21 - 194502333 TCTGCCCCACATTATACCGGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121025039 21 - 195804263 TCTGCCCCACATTATACCGGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456311 21 - 17550833 TCTGCCCCACATTATACCGGA i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111532962 21 - 190429646 TCTGCCCCACATTATACCGCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110701101 21 - 189454096 TCTGCCCCACGTTATACCGCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13269163 21 + 26754465 TCTGCCCCACGTTATACCGCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170432 21 - 5137665 TCTGCCCCACGTTATATCGCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122885275 21 - 135778131 TCTGCCCCACGTTATACCGCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1987113 21 + 2427316 TCTGCCCCACGTTATACCACA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280674 21 + 1448899 TCTGCCCCACATTATACCAGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002515 21 - 190850796 TCCACCCCACATTATACCAGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8166103 21 - 15139346 TCTGCCCCACATTATAACAGT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949814 21 - 7304997 TCTGCCCCGTATTATACCAGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367853 21 - 11631747 TCTGCCCCACATTATACCAGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1774037 21 + 3286835 TCTGCCCCATGTTGTACCAGG i micMur3.chrUn_NW_017968520v1 I 15 C 0 s canFam3.chr13 47973376 21 + 63241923 CCCCCTCAACACTATACCGGA i canFam3.chr13 I 1 C 0 s dasNov3.JH568349 4087730 1 - 5279953 ---------------A----- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1862940 61 + 4188776 I e mm10.chr5 76405781 519 + 151834684 I e otoGar3.GL873602 8600525 50 + 8790067 I e nomLeu3.chr9 69329286 100 - 118206036 M a score=204595.000000 s hg38.chr4_KI270787v1_alt 46610 16 + 111943 TGCAACCTTGCTCCGA s panTro5.chr4 119611650 16 - 194502333 TGCAACCTTGCTCCAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121025060 16 - 195804263 TGCAACCTTGCTCCAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456332 16 - 17550833 TGCAACCTTGCTCCAA i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111532983 16 - 190429646 TGCAACCTTGCTCCAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110701122 16 - 189454096 TGCAACCTTGCTCCAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13269184 16 + 26754465 TGCAACCTTGCTCCAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170453 16 - 5137665 TGCAACCTTGCTCCAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122885296 16 - 135778131 TGCAACCTTGCTCCAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1987134 16 + 2427316 TGCAACCTTGCTCCAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280695 16 + 1448899 TGCAACCTTGCTCCAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002536 16 - 190850796 TGCAACCTTGCTCCAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8166124 16 - 15139346 TGCAACCTTGCTCCAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949835 16 - 7304997 TGCAACCTTGCTCCAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367874 16 - 11631747 TGCAACCTTGCTCCAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1774058 16 + 3286835 TGCAACCTTGCCCCAA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s mm10.chr5 76406300 15 + 151834684 TTCAACCTT-TTCTGG i mm10.chr5 I 519 I 9 s canFam3.chr13 47973397 16 + 63241923 TATAATCTTACCCCAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4087731 14 - 5279953 TGC--CCTTGGGCCAA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1862940 61 + 4188776 I e otoGar3.GL873602 8600525 50 + 8790067 I e nomLeu3.chr9 69329286 100 - 118206036 M a score=233825.000000 s hg38.chr4_KI270787v1_alt 46626 32 + 111943 GCAAAAGCCCAG----ACATGATGA---TGAGAATACTG s panTro5.chr4 119611666 32 - 194502333 GCAAAAGCCCAG----ACATGATGA---TGAGAATACTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121025076 32 - 195804263 GCAAAAGCCCAG----ACATGATGA---TGAGAATACTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456348 32 - 17550833 GAAAAAGCCCAG----ACATGATGA---TCAGAATACTG i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111532999 32 - 190429646 GCAAAAGCCCGG----ACATGATGA---GAATACTCCTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110701138 32 - 189454096 GCAAAAGCCTGG----ACATGATGA---GAATACTCCTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13269200 32 + 26754465 GCAAAAGCCTGG----ACATGATGA---GAATACTCCTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170469 32 - 5137665 GCAAAAGCCCGG----ACATGATGA---GAATACTCCTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122885312 32 - 135778131 GCAAAAGCCCGG----ACATGATGA---GAGTACTCCTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1987150 32 + 2427316 GCAAAAGCCCGG----ACATGATGA---GAATACTCCTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280711 32 + 1448899 GCAAAAGCCCGG----ACATGATGA---GAATACTCCTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002552 35 - 190850796 GCAAAAGCCCAG----ACATGATGATGGGAAAACTCCTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8166140 38 - 15139346 GC-AAAGCCCAGACATACATGATGATGAGAAAACTCCTG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949851 35 - 7304997 GCAAAAGCACAG----ACATGATGATGAGAAAACTCCTG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367890 35 - 11631747 GCAAAAGCCTAG----ACATGATGACGAGAAAACTCCTG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1774074 35 + 3286835 GAAAAAGCCCAG----AGATGATGATGGCAAAAGTCCTG i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8600575 12 + 8790067 ---------------------------GCAAAGGCCCTG i otoGar3.GL873602 I 50 C 0 s mm10.chr5 76406324 32 + 151834684 AGCAGATTCTGA----AGCTGGCGA---TAGCAAACCTG i mm10.chr5 I 9 I 1 s canFam3.chr13 47973413 35 + 63241923 GAAAAAGCCCCA----AAATGATGCTAGCAAAGCTCCTC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4087745 27 - 5279953 ---ATAGCATTG------ATGATGG---TAAAACTACTG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1862940 61 + 4188776 I e nomLeu3.chr9 69329286 100 - 118206036 M a score=2017472.000000 s hg38.chr4_KI270787v1_alt 46658 148 + 111943 ATATACATAAATGCAGATACCTGGCTCTTTTTGGAAAGAGAGTCC---AATATTCTCTTTCTATGTTAAAGTATTGGGTGCCTGGTACCTGATTTTATCATATAAT-GGGAAAAACAGACTCCAGGAAATTAACATTTCTTGGAGCTTCCTG s panTro5.chr4 119611698 148 - 194502333 ATATACATAAATGCAGATACCCGGCTCTTTTTGGAAAGAGAGTCC---AATATTCTCTTTCTATGTTAAAGTATTGGGTGCCTGGTACCTGATTTTATTATATAAT-GGGAAAAACAGACTCCAGGAAATTAACATTTCTTGGAGCTTCCTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121025108 148 - 195804263 ATATACATAAATGCAGATACCTGGCTCTTTTTGGAAAGAGAGTCC---AATATTCTCTTTCTATGTTAAAGTATTGGGTGCCTGGTACCTGATTTTATTATATAAT-GGGAAAAACAGACTCCAGGAAATTAACATTTCTTGGAGCTTCCTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456380 148 - 17550833 ATATACATAAATGCAGACACCTGGCTCTTTTTGGAAAGAGAGTCC---AATATTCTCTTTCTATGTTAAAGTATTGGGTGCCTGGTACCTGATTTTATTATATAAT-GGGAAAAACAGACTCCAGGAGATTAACATTTCTTGGAGCTTCCTG i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111533031 148 - 190429646 ATATACATAAATGCAGACACCTGGCTCTTTTTGGAGAGAGAGTCC---AATATTCTCTTTCTGTATTAAAGTATTGGGTGCCTGGTACCTGATTTTATTATATAAT-GGGAAAAACAGACTCCAGGAAATTAACATTTCTTGGAGCTTCCTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110701170 148 - 189454096 ATATACATAAATGCAGACACCTGGCTCTTTTTGGAGAGAGAGTCC---AATATTCTCTTTCTGTATTAAAGTATTGGGTGCCTGGTACCTGATTTTATTATATAAT-GGGAAAAACAGACTCCAGGAAATTAACATTTCTTGGAGCTTCCTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13269232 148 + 26754465 ATATACATAAATGCAGACACCTGGCTCTTTTTGGAGAGAGAGTCC---AATATTCTCTTTCTGTATTAAAGTATTGGGTGCCTGGTACCTGATTTTATTATATAAT-GGGAAAAACAGACTCGAGGAAATTAACATTTCTTGGAGCTTCCTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170501 148 - 5137665 ATATACATAAATGCAGACACCTGGCTCTTTTTGGAGAGAGAGTCC---AATATTCTCTTTCTGTATTAAAGTATTGGGTGCCTGGTACCTGATTTTATTATATAAT-GGGAAAAACAGACTCCAGGAAATTAACATTTCTTGGAGCTTCCTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122885344 148 - 135778131 ATATACATAAATGCAGACACCTGGCTCTTTTTGGAGAGAGAGTCC---AATATTCTCTTTCTGTATTAAAGTATTGGGTGCCCAGTACCTGATTTTATTATATAAT-GGGAAAAACAGACTCCAGGAAATTAACATTTCTTGGAGCTTCCTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1987182 148 + 2427316 ATATACATAAATGCAGACACCTGGCTCTTTTTGGAGAGAGAGTCC---AATATTCTCTTTCTGTATTAAAGTATTGGGTGCCTGGTACCTGATTTTATTATATAAT-GGGAAAAACAGACTCCAGGAAATTAACATTTCTTGGAGCTTCCTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280743 148 + 1448899 ATATACATAAATGCAGACACCTGGCTCTTTTTGGAGAGAAAGTCC---AATATTCTCTTTCTGTATTAAAGTATTGGGTGCCTGGTACCTGATTTTATTATATAAT-GGGAAAAACAGACTCCAGGAAATTAACATTTCTTGGAGCTTCCTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002587 148 - 190850796 ATATACATAAATGCAGACAGTTGGCTCTTTCTGGGAAGACAGTCC---AATATTCTCTTTCTATGTTAAAGTATTGGGAGCCTGGTACCTAACTGTATTGTATAAT-GGGAAAAATAGACTCCAGGAAATTAACATTTGTTGGAGTTTCCTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8166178 148 - 15139346 ATACACATACATGCAGACACTTGGCTCTTTCTGGGAAGACAGTCC---AATATTCTTTTCGTATGTTAAAGTATTGGGAGCCTGGTACCTAATTTTATTATATAAT-GGGAAAAATAGACTCCAGAAAATTAACATTTGTTGGGGCTTCCTG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6949886 148 - 7304997 ATATACATAAATGCAGACACTTGGCTCTTTCTGGGAAGACAGTCC---AATATTCTCTTTCTATGTTAAAGTATTGGGAGCCTGGTACCTAATTTTATTATATAAT-GGGAAAAATAGACTCCAGGAAATTAACAGTTGTTGGGGCTTCCTG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9367925 148 - 11631747 ATATACATAAATGCAGACACTTGGCTCTTTCTGGGAAGACAGTCC---AATATTCTCTTTCTATGTTAAAGTATTGGGAGCCTGGTACCTAATTTTATTATATAAT-GGGAAAAATAGACTCCAGGAAATTAACATTTGTTGGAGCTTCCTG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1774109 147 + 3286835 ATACACATAAATGCTTATACCTGGCTCTTTCTGGGAGCAGAGTCC---AATATCCTCTTTCCATGTTAATGTATTCAATTCCAGATAACTGATTTTATTATGTAATGGGGAAAA--AAGACTCAGAAAATTAACATTTCTTAGAGCTTCCCG i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1863001 146 + 4188776 ATACACATAAATGCATACACCTGGCTCTTTCTGGGAGCAGAGTCC---AATATCCTCTTTCCATGTTAATGTATTTGATTTCAGATAACTGATTTTATTATACCAC-AGGAAAA--AAGACTCAGAAAATTAACATTTCTTAGAGCTTCCCG i proCoq1.NW_012140747v1 I 61 C 0 s otoGar3.GL873602 8600587 146 + 8790067 ATATACATAAATATACACACCTGGGTGGTTTGGGGAGCAGGGTCCCCAAATATCCTCTTTCTATGT-----TATTTAGGTCCAAATAACTGATTTTATTATATAAT-GGGAAAAAGAAGATTCAGGAAATTAACATTTCTTGGTGCTTCCTG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76406357 144 + 151834684 CTGCAGACAAACACAAGGACCTGGAT--TTTTAGAAGAATGGTCCAC-AATGCCCTCAATCTATACCAGAGTTTCCAGTCCTTAGTA-CTGACTTCATTATATAAT-GGTGAAA--AAGACCTAGAAAATGAACACTTC-TGCACATTCCTC i mm10.chr5 I 1 C 0 s canFam3.chr13 47973448 131 + 63241923 ATATACATAAATGCATACACCTGACTCTCTTGCGGGGCAGGGTCT---AATATCTTCTTTCTATGTTAAAG--------------TAACTGACTTTACTATATACA-GGGGAAA--AGACT-CAGGAAATTAACATTTCTTAAAGCTGCCTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4087772 129 - 5279953 ATATACATAAATACATA---CTGGCTCTTTTGGACAGCAGGGTTC---AATATCCTCTTCCCACATTAAAGTATTCCATTCCTGGTAACTGACCTTATTATATAAT-----------------AAGAAATTAACATTTCTTAGAGTTTCCTG i dasNov3.JH568349 C 0 C 0 e nomLeu3.chr9 69329286 100 - 118206036 M a score=2466228.000000 s hg38.chr4_KI270787v1_alt 46806 160 + 111943 AGAGTAAAACTCT----AATTCATGGAGGAGTACTTAAACCCATGATTTTAAATGAGCAACTTAGTTGAATTTTGAAAATACAGCA--GCAAAAATTCAGCATTCTTGAAGAAATAAGTCCTGTGAG----AAAAATATTCTAATTACTAGTTA-CATCTGAGATGAT-A-------------------------------------------------------------TA s panTro5.chr4 119611846 160 - 194502333 AGAGTAAAATTCT----AATTCATGGAGGAGTACTTAAACCCATGATTTTAAATGAGCAACTTAGTTGAATTTTGAAAATACAGCA--GCAAAAATTCAGCATTCTTGAAGAAATAAGTCCTGTGAG----AAAAATATTCTAATTACTAGTTA-CATCTGAGATGAT-A-------------------------------------------------------------TA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121025256 160 - 195804263 AGAGTAAAATTCT----AATTCATGGAGGAGTACTTAAACCCATGATTTTAAATGAGCAACTTAGTTGAATTTTGAAAATACAGCA--GCAAAAATTCAGCATTCTTGAAGAAATAAGTCCTGTGAG----AAAAATATTCTAATTACTAGTTA-CATCTGAGATGAT-A-------------------------------------------------------------TA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456528 160 - 17550833 AGAGTAAAAGTCT----AATTCATGGAGGAGTACTTAAACCCATGATTTTAAATTAGCAACTTAGTTGAATTTTGAAAATACAGCA--GCAAAAATTCAGCATTCTTGAAGAAATAAGTCCTGTGAG----AAAAATATTCTAATTACTAGTTA-CATCTGAGATGAT-A-------------------------------------------------------------TA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69329387 159 - 118206036 AGAGTAAAACTCT----AATTCATAGAGGAGCACTTAAACCCATGATCTTAAATTAGCAACTTAGTTGAA-TTTGAAAATACAGCA--GCAAAAATTCAGCATTCTTGAAGAAATAAGTCCTGTGAG-----AAAATATTCTAATTACTAGTTA-CATCTAAGATGATAA-------------------------------------------------------------TT i nomLeu3.chr9 M 100 C 0 s rheMac8.chr5 111533179 159 - 190429646 AGAGTAAAACTCT----AATTCATGGAGGAGTACTTAAACCCATGATCTTAAATTAGCAACTTAGTTGAATTTTGAAAATACAGCA--GTAAAAATTCGGCATTCTTGAAGAAATAAGTCCTGTGAG-----AAAATATTCTAATTACTAGTTA-CATCTGAGATGAT-A-------------------------------------------------------------TA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110701318 159 - 189454096 AGAGTAAAACTCT----AATTCATGGAGGAGTACTTAAACCCATGATCTTAAATTAGCAACTTAGTTGAATTTTGAAAATACAGCA--GTAAAAATTCGGCATTCTTGAAGAAATAAGTCCTGTGAG-----AAAATATTCTAATTACTAGTTA-CATCTGAGATGAT-A-------------------------------------------------------------TA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13269380 159 + 26754465 AGAGTAAAACTCT----AATTCATGGAGGAGTACTTAAACCCATGATCTTAAATTAGCAACTTAGTTGAATTTTGAAAATACAGCA--GTAAAAATTCGGCATTCTTGAAGAAATAAGTCCTGTGAG-----AAAATATTCTAATTACTAGTTA-CATCTGAGATGAT-A-------------------------------------------------------------TA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170649 159 - 5137665 AGAGTAAAACTCT----AATTCATGGAGGAGTACTTAAACCCATGATCTTAAATTAGCAACTTAGTTGAATTTTGAAAATACAGCA--GTAAAAATTCGGCATTCTTGAAGAAATAAGCCCTATGAG-----AAAATATTCTAATTACTAGTTA-CATCTGAGATGAT-A-------------------------------------------------------------TA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122885492 159 - 135778131 AGAGTAAAACTCT----AATTCATGGAGGAGTACTTAAACCAATGATCTTAAATTAGCAACTTAGTTGAATTTTGAAAATACAGCA--GTAAAAATTTGGCATTCTTGAAGAAATAAGTCCTGTGAG-----AAAATATTCTAATTACTAGTTA-CATCTGAGATGAT-A-------------------------------------------------------------TA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1987330 159 + 2427316 AGAGTAAAACTCT----AATTCATGGAGGAGTACTTAAACCCATGATCTTAAATTAGCAACTTAGTTGAATTTTGAAAATACAGCA--GTAAAAATTCGGCATTCTTGAAGAAATAAGTCCTATGAG-----AAAATATTCTAATTACTAGTTA-CATCTGAGATGAT-A-------------------------------------------------------------TA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1280891 159 + 1448899 AGAGTAAAACTCT----AATTCATGGAGGAGTACTTAAACCCATGATCTTAAATTAGCAACTTAGTTGAATTTTGAAAATACAGCA--GTAAAAATTCGGCATTCTTGAAGAAATAAGTCCCATGAG-----AAAATATTCTAATTACTAGTTG-CATCTGAAATGAC-A-------------------------------------------------------------TA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002735 163 - 190850796 AGAGTAAAATTCTTAATAACTCATGGAAGAGTACTTAAACTCATGATCTTAAATTAGTAACTTAGTTTAATTTTGAAAATAGAGCA--GCGAAAATTCAGCATTCTGGAAGAAATAAGTCCGGTGAG-----AAAGTATTCTAATTACTAGTTA-CATCTGAGATGAT-A-------------------------------------------------------------AA i calJac3.chr3 C 0 I 2 s saiBol1.JH378162 8166326 163 - 15139346 AGAGTATAATTCTTAATAAGTCATGGAGGAGTACTTAAACTCATGATCTTAAATTAGTAACTTAGTTTAATTTTGAAAATAGAGCA--GCAAAAATTCAACATTCTTGAAGAAATAAGTCCGGTGAG-----AAAATATTCTAATTACTAGTTA-CATCTGAGATAAT-A-------------------------------------------------------------CA i saiBol1.JH378162 C 0 I 5 s cebCap1.NW_016107439v1 6950034 163 - 7304997 AGAGTAAAATTCTTAATAACTCATGGAGGAGTACTTAAACTCATGATCTTAAATCAGTAACTTAGTTTAATTTTGAAAATAGAGCA--GCAAAAATTCAGCATTCTTGAAGAAGTAAGTCTGGTGAG-----AAAATATTCTAATTACTAGTTA-CATCTGAGATGAT-A-------------------------------------------------------------AT i cebCap1.NW_016107439v1 C 0 I 6 s aotNan1.NW_018493494v1 9368073 163 - 11631747 AGAGTAAAATTCTTAAACACTCATGGAAGAGTACTTAAACTCATGATCTTAAATTAGTAACTTAGTTTAATTTTGAAAACAGAGCA--GCAAAAATTCAGCATTCTTGAAGAAATAAGTCCAGTGGG-----AAAATATTCTAATTACTAGTTA-CATCTGAGATGAT-A-------------------------------------------------------------TA i aotNan1.NW_018493494v1 C 0 I 8 s micMur3.chrUn_NW_017968520v1 1774256 159 + 3286835 AGAGTAAAACTTT----AATTCATGGCGGTGTCCTTAAACCCATGATGGTCAATTAGTAACCTGGTAG-ATTTTGAGAAAAGAGCA--GCAAAAATTTAGCCTTTTTTAAGAAATAAGTCCAGTGAG-----AAAATAATATAATTACCAGTTATTATCTGAGATAAT-A-------------------------------------------------------------CA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1863147 159 + 4188776 AGAGTAAAACTTT----AATTCATGGAGGGGTCCTTCAACCCGTGATCGTCAGTTAGTAACTTGGTAG-ATTTTGAAAAAAGAGCA--GCAAAAATTTAGCATTTTTGAAGAAATAAGTCCTGTGAG-----AAAATAATCTAATTACTAGTTATTATCTGAGATGAT-A-------------------------------------------------------------TA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8600733 159 + 8790067 AGAGTTAAACTTT----AATTCATGGAGGACTCCTTAAATACATGATCTGAAATTAGTAACTTAGTTG-ATTTTGAAAAGAGAGCA--GCAAAATTTTTGCATTTTTGAAGAAATAAGTCCTGTGAG-----AAAGTAATCTAATTACTAGTTATTAGCTAAGATGAT-A-------------------------------------------------------------TA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76406501 217 + 151834684 AGAGT-AAACTGT----AATTCATAGAAGAGCAATCAGCCCCTTAATCTTAAATTAGTAACTAATTTTAATCTTGAAAACAGAGCA--GCAAAAATCTAGCAATTTTGAAAACACAGATCCTCTGAGGGAAAAAAAATGTATGATCCAAGTTTATTATTTGAGATGAT-AGTTGTAGCA--AAAAATACAATTTTAAAAGGTCAAATTGGATGAGAATTACAC------TCTA i mm10.chr5 C 0 C 0 s canFam3.chr13 47973579 223 + 63241923 CAAATAAAATTCT----AATTCATGGAGGAGCACTTAAACTTATGATCTTAAATTAACAACTTAGTCAAATTTTGAAAATAGAGGAAGAAAAAAAATCAACATTTTTGAAGAAATAAGTCCTGTGAG-----AGAAAATTCTAATTGCTAGTTATTATCTAAGGTGAT-AGttattataataaaaatactattttaaaaGCTCAATTGGAATCAAAATTATACTACAATTATA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4087901 161 - 5279953 GGAGTAAAACTCT----AATTCATGGAGGGGAGCTTAAACCCATGATCTTGAATTAGTAACTTAGTCAATTTTTGAAAATAGAGCA--GAAAATATTCAGTACTTTTGAAGAAATAAGTCCTATGAG----AAAGAAATTCTAATTACTAGTTATTATCTCAGACATT-A-------------------------------------------------------------TA i dasNov3.JH568349 C 0 I 114 a score=8615082.000000 s hg38.chr4_KI270787v1_alt 46966 588 + 111943 A-TTT------------------------------------------------------------------TTCTAACT---------------------------------------------------------------TTCCTAATGCAAATGATTGGCTTT-AAAAATGGCCTAGAAGGGACTTTCCTCTACAATAATTTTGCTTAAAATA-----------TACAAATTAGGTAGTGATTTGGAGGAAATCTGTAGCTTTTCTTGTTGCCATGGTAACAATCTACGTTTCCTTATATTTGTACAGTCAGAATGGTC----CATGCATAGTTTGCCCTGGAGCCGTAGATGACGAT--GTTGGTGCCATGGAGTGCTCTCACAACATTTGAAAAATGATAATCATATCCTTATCTTAT-TTGCTGCCATTTAGCCAATGTAGAGGAAACAACATATAAATGAGGTTTCTT--TTGCAGAAGCAGCTATAACCTAAT-------GAAAAGCCTGCCAGTAGTTCATTTTATTAGACGTTAATATAATGTACTAAGTACACACAAGCTAGAATAGAAGTTCCTTG-------------------------------------------AAAAAAATTGAGGGATATCCAGTCTC-CCCAGCATAATTATATGAATGGCTTTACAGTCTTGGCATTGAAGACTTGAGAAC-TTGAAAAAGACTCAGAGAAGAGCTAGCAAGA-TATCGATGGAGTGGGAAAGAAGGT--CCTTTGATGAAA----AATACTAGCAC s panTro5.chr4 119612006 588 - 194502333 A-TTT------------------------------------------------------------------TTCTAACT---------------------------------------------------------------TTCCTAATGCAAATGATTGGCTTT-AAAAATGGCCTAGAAGGGACTTTCCTCTACAATAATTTTGCTTAAAATA-----------TACAAATTAGGTAGTGATTTGGAGGAAATCTGTAGCTTTTCTTGTTGCCATGGTAACAATCTACGTTTCCTTATATTTGTACAGTCAGAATGGTC----CAGGCATAGTTTGCCCTGGAGCCGTAGATGACTAT--GTTGGTGCCATGGAGTGCTCTCACAACATCTGAAAAATGATAATCATGTCCTTATCTTAT-TTGCTGCCATTTAGCGAATGTAGAGGAAACAACATATAAATGAGGTTTCTT--TTGCAGAAGCAGCTATAACCTAAT-------GAAAAGCCTGCCAGTAGTTCATTTTATTAGACTTTAATATAATGTACTAAGTACACACAAGCTAGAATAGAAGTTCCTTG-------------------------------------------AAAAAAATTGAGGGATATCCAGTCTC-CCCAGCATAATTATATGAATGGCTTTACAGTCTTGGCATTGAAGACTTGAGAAC-TTGAAAAAGACTCAGAGAAGAGCTAGCAAGA-TATCGATGGAGTGGGAAAGAAGGT--CCTTTGATGAAA----AATACTAGCAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121025416 588 - 195804263 A-TTT------------------------------------------------------------------TTCTAACT---------------------------------------------------------------TTCCTAATGCAAATGATTGGCTTT-AAAAATGGCCTAGAAGGGACTTTCCTCTACAATAATTTTGCTTAAAATA-----------TACAAATTAGGTAGTGATTTGGAGGAAATCTGTAGCTTTTCTTGTTGCCATGGTAACAATCTACGTTTCCTTATATTTGTACAGTCAGAATGGTC----CATGCATAGTTTGCCCTGGAGCCGTAGATGACTAT--GTTGGTGCCATGGAGTGCTCTCACAACATTTGAAAAATGATAATCATGTCCTTATCTTAT-TTGCTGCCATTTAGCGAATGTAGAGGAAACAACATATAAATGAGGTTTCTT--TTGCAGAAGCAGCTATAACCTAAT-------GAAAAGCCTGCCAGTAGTTCATTTTATTAGACTTTAATATAATGTACTAAGTACACACAAGCTAGAATAGAAGTTCCTTG-------------------------------------------AAAAAAATTGAGGGATATCCAGTCTC-CCCAGCATAATTATATGAATGGCTTTACAGTCTTGGCATTGAAGACTTGAGAAC-TTGAAAAAGACTCAGAGAAGAGCTAGCAAGA-TATCGATGGAGTGGGAAAGAAGGT--CCTTTGATGAAA----AATACTAGCAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4456688 588 - 17550833 A-TTT------------------------------------------------------------------TTCTAACT---------------------------------------------------------------TTCCTAATGCAAATGATTGGCTTT-AAAAATGGCCTAGAAGGGACTTTCCTCTACAATAATTTTGCTTAAAATA-----------TACAAATTAGGTAGTGATTTGGAGGAAATCTGTAGCTTTTCTTGTTGCCATGGTAACAATCTACATTTCCTTATATTTGTACAGTCAGAATGGTC----CATGCATAGTTTGCCCTGGAGCCGTAGATGACTAT--GTTGGTGCCATGGAGTGCTCTCACAACATTTGAAAAATGATAATCATGTCCTTATCTTAT-TTGCTGCCATTTAGCCAATGTAGAGGAAACAACATATAAATGAGGTTTCTT--TTGCAGAAGCAGCTATAACCTAAT-------GAAAAGCCTGCCAGTAGTTCATTTTATTAGACGTTAATATAATGTACTAAGTACACACAAGCTAGAATAGAAGTTCCTTG-------------------------------------------AAAAAAATTGAGGGATATCCAGTCTC-CCCAGCATAATTATATGAATGGCTTTACAGTCTTGGCATTGAAGACTTGAGAAC-TTGAAAAAGACTCAGAGAAGAGCTAGCAAGA-TATCGATGGAGTGGGAAAGAAGGT--CCTTTGATGAAA----AATACTAGCAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69329546 489 - 118206036 T-TTT------------------------------------------------------------------TTTTAACT---------------------------------------------------------------TTCCTAATGCAAATGATTGGCTTT-AAAAATGGCCTAGAAGGGACTTTCCTCTACAATAATTTTGCTTAAAATA-----------CAGAAATTGGGTAGTGATTTGGAGGAAATCTGTAGTTTTTCTTGTTGCCATGGTAACAATCTACATTTCCATATATTTGTACAGTCATATTGGTC----CATGCATAGTTTGCCCTGGAGCCATAGATGACTAT--GTTGGTGCCATGGAGTG----CACAACATTTGAAAAATGATAATCATGTCCTTA-----------------TTAGACAATGCAGAGGAAACAACATAT-AATGAGGTTTCTT--TTGCAGAAGCAGCTATAACTTAAT-------GAAAAACCTGCCAGTGATTCATTTTATTAGACATTAATATAATGTACTAAGTACACACAAGCTAGAATAGAAGATCCTTG-------------------------------------------AAAAAAATTGAGGGATATCCAGTCTC-CCCAGCATAATTATAAGAAT-------------------------------------------------------------------TAT-------------AAGAAGGT--CCTTTGATGAAA----AATACTAGCAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111533338 586 - 190429646 A-TCT------------------------------------------------------------------TTTTAACT---------------------------------------------------------------TTCCTAGTGCAAATGATCTGCTTT-AAAAATGGCCTAGAAGGGACTTCCCTCTACAATAATTTTGCTTAAAATA-----------TAGAAATTAGGTATTGATTTGGAGGAAATCTGTAGCTTTTCTTGTTGCTATGGTAACAATCTACATTTCCATGTATTTGTACAGTCATAATGGTC----CATGCATAGTTTGCCCTGGAGCCGTAGATGACTAT--GTTGGTGCCATCAAGCGCTTTCACAACATCTGAAAAATGATAATCATGTCCTTATCTTAT-TTGCTGCCATTTAGCCAATGTAGAGGAAACAACATATAAATGAGGTTTCTT--TTGCAGAAGCAGCTATAACTTAAT-------GAAAAACCTGCCAGTGGTTCATTTTATTAGACATTAATATAATGTACGAAGTACACAC-AGCTAGAATAGAAGTTCCTTG-------------------------------------------AAAAAAATTGAGGGATATCCAGTCTC-CCCAGCATATTTATATGAATGGCTTTACAGTCTTGGCATTGAAGACTTTAGAAC-TTGAAAAAGACTCAGAGAAGAGCTAGCAAGA-TATCGATGGAGTGGGAAGGAAGGT---CTTTGATGAAA----AATACTAGCAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110701477 586 - 189454096 A-TCT------------------------------------------------------------------TTTTAACT---------------------------------------------------------------TTCCTAGTGCAAATGATCTGCTTT-AAAAATGGCCTAGAAGGGACTTCCCTCTACAATAATTTTGCTTAAAATA-----------TAGAAATTAGGTATTGATTTGGAGGAAATCTGTAGCTTTTCTTGTTGCTATGGTAACAATCTACATTTCCATGTATTTGTACAGTCATAATGGTC----CATGCATAGTTTGCCCTGGAGCCGTAGATGACTAT--GTTGGTGCCATCAAGCGCTTTCACAACATCTGAAAAATGATAATCATGTCCTTATCTTAT-TTGCTGCCATTTAGCCAATGTAGAGGAAACAACATATAAATGAGGTTTCTT--TTGCAGAAGCAGCTATAACTTAAT-------GAAAAACCTGCCAGTGGTTCATTTTATTAGACATTAATATAATGTACGAAGTACACAC-AGCTAGAATAGAAGTTCCTTG-------------------------------------------AAAAAAATTGAGGGATATCCAGTCTC-CCCAGCATATTTATATGAATGGCTTTACAGTCTTGGCATTGAAGACTTTAGAAC-TTGAAAAAGACTCAGAGAAGAGCTAGCAAGA-TATCGATGGAGTGGGAAGGAAGGT---CTTTGATGAAA----AATACTAGCAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13269539 586 + 26754465 A-TCT------------------------------------------------------------------TTTTAACT---------------------------------------------------------------TTCCTAGTGCAAATGATCTGCTTT-AAAAATGGCCTAGAAGGGACTTCCCTCTACAATAATTTTGCTTAAAATA-----------TAGAAATTAGGTATTGATTTGGAGGAAATCTGTAGCTTTTCTTGTTGCTATGGTAACAATCTACATTTCCATGTATTTGTACAGTCATAATGGTC----CATGCATAGTTTGCCCTGGAGCCGTAGATGACTAT--GTTGGTGCCATCAAGTGCTTTCACAACATCTGAAAAATGATAATCATGTCCTTATCTTAT-TTGCTGCCATTTAGCCAATGTAGAGGAAACAACATATAAATGAGGTTTCTT--TTGCAGAAGCAGCTATAACTTAAT-------GAAAAACCTGCCAGGGGTTCATTTTATTAGACATTAATATAATGTACGAAGTACACAC-AGCTAGAATAGAAGTTCCTTG-------------------------------------------AAAAAAATTGAGGGATATCCAGTCTC-CCCAGCATATTTATATGAATGGCTTTACAGTCTTGGCATTGAAGACTTTAGAAC-TTGAAAAAGACTCAGAGAAGAGCTAGCAAGA-TATCGATGGAGTGGGAAGGAAGGT---CTTTGATGAAA----AATACTAGCAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4170808 587 - 5137665 A-TCT------------------------------------------------------------------TTTTAACT---------------------------------------------------------------TTCCTAGTGCAAATGATCTGCTTT-AAAAATGGCCTAGAAGGGACTTCCCTCTACAATAATTTTGCTTAAAATA-----------TAGAAATTAGGTATTGATTTGGAGGAAATCTGTAGCTTTTCTTGTTGCTATGGTAACAATCTACATTTCCATGTATTTGTACAGTCATAATGGTC----CATGCATAGTTTGCCCTGGAGCCGTAGATAACTAT--GTTGGTGCCATCAAGCGCTTTCACAACATCTGAAAAATGATAATCATGTCCTTATCTTAT-TTGCTGCCATTTAGCCAATGTAGAGGAAACAATATATAAATGAGGTTTCTT--TTGCAGAAGCAGCTATAACTTAAT-------GAAAAACCTGCCAGTGGTTCATTTTATTAGACATTAATATAATGTACGAGGTACACACAAGCTAGAATAGAAGTTCCTTG-------------------------------------------AAAAAAATTGAGGGATATCCAGTCTC-CCCAGCATAATTATATGAATGGCTTTACAGTCTTGGCATTGAAGACTTGAGAAC-TTGAAAAAGACTCAGAGAAGAGCTAGCAAGA-TATCGATGGAGTGGGAAGGAAGGT---CTTTGATGAAA----AATACTAGCAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122885651 591 - 135778131 A-TCT------------------------------------------------------------------TTTTAACT---------------------------------------------------------------TTCCTAGTGCAAATGATCTGCTTT-AAAAATGGCCTAGAAGGGACTTCCCTCTACAATAATTTTGCTTAAAATA-----------TAGAAATTAGGTATTGATTTGGAGGAAATCTGTAGCTTTTCTTGTTGCTATGGTAACAATCTACATTTCCAGGTATTTGTACAGTCATAATGGTCCATGCATGCATAGTTTGCCCTGGAGCCGTAGATGACTAT--GTTGGTGCCATCAAGAGCTCTCACAACATCTGAAAAATGATAATCATGTCCTTATCTTAT-TTGCTGCCATTTAGCCAAGGTAGAGGAAACAACATATAAATGAGGTTTCTT--TTGCAGAAGCAGCTATAACTTAAT-------GAAAAACCTGCCAGTGGTTCATTTTATTAGACATTAATATAATGTATGAAGTACACACAAGCTAGAATAGAAGTTCCTTG-------------------------------------------AAAAAAATTGAGGGATATCCAGTCTC-CCCAGCATAATTATATGAATGCCTTTACAGTCTTGGCATTGAAGACTTTAGAAC-TTGAAAAAGACTCAGAGAAGAGCTAGCAAGA-TACCGATGGAGTGGGAAGGAAGGT---CTTTGATGAAA----AATACTAGCAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1987489 587 + 2427316 A-TCT------------------------------------------------------------------TTTTAACT---------------------------------------------------------------TTCCTAGTGCAAATGATCTGCTTT-AAAAATGGCCTACAAGGGACTTCTCTCTACGGTAATTTTGCTTAAAATA-----------TAGAAATTAGGTATTGATTTGAAGGAAATCTGTAGCTTTTCTTGTTGCTATGGTAACAATCTACATTTCCATGTATTTGTACAGTCATAATGGTC----CACGCATAGTTTGCCCTGGAGCCGTAGATAACTAT--GTTGGTGCCATCAAGCGCTTTCACAACATCTGAAAAATGATAATCATGTCCTTATCTTAT-TTGCTGCCATTTAGCCAATGTAGAGGAAACAACATATAAATGAGGTTTCTT--TTGCAGAAGCAGCTATAACTTAAT-------GAAAAACCTGCCAGTGGTTCATTTTATTAGACATTAATATAATGTACAAAGTACACACAAGCTAGAATAGAAGTTCCTTG-------------------------------------------AAAAAAATTGAGGGATATCCAGTCTC-CCCAGCATAATTATATGAATGGCTTTACAGTCTTGGCATTGAAGACTTGAGAAC-TTGAAAAAGACTCAGAGAAGAGCTAGCAAGA-TATCGATGGAGTGGGAAGGAAGGT---CTTTGATGAAA----AATACTAGCAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1281050 587 + 1448899 A-TCT------------------------------------------------------------------TTTTAACT---------------------------------------------------------------TTCCTAGTGCAAATGATTTGCTTT-AAAAATGGCCTAGGAGGGACTTCCCTCTACAATAATTTTGCTTAAAATA-----------TAGAAATTAGGTATTGATTTGGAGGAAATCTGTAGCTTTTCTTGTTGCCATGGTAACAATCTACATTTCCATGTATTTGTACAGTCATAATGGTC----CATGCATAGTTTGCCCTGGAGCTGTAGATGACTAT--GTTGGTGCCATCAAGCGCTCTCACAACATCTGAAAAATGATAATCATGTCCTTATCTTAT-TTGCTGCCATTTAGCCAATGTAGAGGAAACAACATACAAATGAGGTTTCTT--GTGCAGAAGCAGCTATAACTTAAT-------GAAAAACCTGCCAGTGGTTCATTTTATTAGACATTAATATAACGTACGAAGTACACACAAGCTAGAATAGAAATTCCTTG-------------------------------------------AAAAAAATTGAGGGATATCCAGTCTC-CCCAGCATAATTATATGAATGGCTTTACAGTCTTGGCATTGAAAACTTTAGAAC-TTGAAAAAGACTCAGAGAAGAGCTAGCAAGA-TATCGATGGAGTGGGAAGGAAGGC---CTTTGATGAAA----AATACTAGCAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53002900 574 - 190850796 T-TTT------------------------------------------------------------------TTTTTACT---------------------------------------------------------------TTCCTAATGCAAACAATTTCCTTT--AAAATGGCCTAGAAGGGACTTTCCTCTACAATAATTTTGCTTAAAATA-----------TAGAAATTAGGTAGTGATTTGGAGGAAATCTGTAGCTTTTCTTGTTGCCATGGTAACAATCTACATTTCCATATATTTGTACAGTCGTAATGGTC----CATGTATAGTTTGCTCTGGAGCCTTAAATGACTAT--ATTGGTGCCATCAAGTGCTCTCACAACATTTGAAAAATGATAATTATATCCTTATCTTAT-TTGCTGCCATTTAGCCAATATAGAGGAAACAACATATAAATGAGGTTTCTT--TTGCAGAAGCAGCTGTAACTTAAC-------GAAA--------AGTGGCTCATTTTATTAGACAGTAATATAATGTACTAAGTACACACAAGC-----TAGAAGTTCCTTC-------------------------------------------AAAAAAACTGAGGGATATCCTGTCTC-CCCAGCATAATTAGATGAATGGCCTTACAGTCTTGGCACTGAAGTCTTCagaat-ttgaagaagactcagagaagacctagcaagg-tatctatggagtgggaaagagagt--cctttgatgaaa----aatACTAGCAC i calJac3.chr3 I 2 C 0 s saiBol1.JH378162 8166494 585 - 15139346 T-TTT------------------------------------------------------------------TTTTTACT---------------------------------------------------------------TTCCTAATGCAAATGATTTGCTTT--AAAATTGCCTAGAAGGGACTTTCCTCTACAATAATTTTGCTTAAAATATAGAAATCAGGTAGAAATTAGGTAGTGATTTGGAGGAAATCTGTAGCTTTTCTTGTTGCCATGGTAACAATCTACATTTTCATGTATTTGTACAGTTGTATCGGTC----CATGTATAGCTTGCTCTGGAGCCATAAATGACCAT--GTTGGTGCCATCAAGTTCTCTCACAACATTTGAAAAATGATAACTATATCCTTATCTTAT-TTGCTGCCATTTAGCCAATGTAGAGGAAACAACATATAAATGAGGTTTCTT--TTGCAGAAGCAGCTGTACCTTAAT-------GAAA--------AGTGGTTGATTTTATTAGATAGTAATATAATGTACTAAGTACACACAAGC-----TAGAAGTTCCTTC-------------------------------------------AAAAAAATTGAGGGATATCCTGTCTC-CCCAGCATAATTAGATGAATGGCCTTACAGTCTTGGCACTGAAGTCTTCAGAAC-TTGAGGAAGGCTCAGAGAAGAGCTAGCAAGG-TATCAATGGAGTGGGAAAGAGAGC--CCTTTGATGAAA----AATACTAGCAC i saiBol1.JH378162 I 5 C 0 s cebCap1.NW_016107439v1 6950203 574 - 7304997 T-TTT------------------------------------------------------------------TTTTTACT---------------------------------------------------------------TTCCTAATGCAAACAATTTGCTTT--AAAATGGCCTAGAAGGGACTTTCCTCTACAATAATTTTGCTTAAAATA-----------TAGAAATTAGGTAGTGATTTGGAGGAAATCTGTAGCTTTTCTTGTTGCCATGGTAACAATCTACATTTCCATATATTTGTACAGTTGTAACGGTC----CATGTATAGTTTGCCCTGGAGCCTTAAATGACTAT--GTTGGTGCCATCAAGTGCTCTCACAACATTTGAAAAATGATAATTATATCCTTATCTTAT-TTGCTGCCATTTAGCCAATGTAGAGGAAACAACATATAAATGAGGTTTCTT--TTGCAGAAGCAGCTGTAACTTAAT-------GAAA--------AGTGGTTCATTTTATTAGACAGTAATATAATGTACTAAGTACACACAAGC-----TAGAAGTTCCTTC-------------------------------------------AAAAAAATTGAGGGATATCCTGTCTC-CCCAGCATAATTAGATGAATGGCCTTACAGTCTTGGCACTGAAGTCTTCAGAAC-TTGAAGAAGACTCAGAGAAGAGCTAGCAAGG-TATCTGTGGAGTGGGAAAGAGAGT--CCTTTGACGAAA----AATACTAGCAC i cebCap1.NW_016107439v1 I 6 C 0 s aotNan1.NW_018493494v1 9368244 572 - 11631747 t-ttt------------------------------------------------------------------tttttact---------------------------------------------------------------tttCTAATGCAAACGATTTGCTTT--AAAATGGCCTAGAAGGGACTTTCCTCTACAATAATTTTGCTTACAATA-----------TAGAAATT---TAGTGATTTGGAGGAAATCTGTAGCTTTTCTTGTTGCCATGGTAACAATCTACATTTCCATATATTTGTACAGTCATAACAGTC----CATGTATAGTTTGCTCTGGAGCCCTAAATGACTAT--GTTGGTGCCATCAAATGCTCTCACAACATTTGAAAAATGATAATTATATCCTTATCTTAT-TTGCTGTCATTTAGCCAATGTAGAGGAAACAACATATAAATGAGGTTTCTT--TTGCAGAAGCAGCTGTAACTTAAT-------GAAA--------AGTGGTTCATTTTATTAGACAGTAATATAATGTACTAAGTACACACAAGC-----TAGAAGTTCCTTC------------------------------------------AAAAAAAATTGAGGGATATCCTGTCTC-CCAAGCATAATTAGATGAATGGACTTACAGTCTTGGCACTGAAGTCTTCAGAAA-TTGAAGAAGACTCAGAGAAGAGCTAGCAAGG-TATCTACGGAGTGGGAAAGAAAGT--CCTTTGATGAAA----AATACTAGCAC i aotNan1.NW_018493494v1 I 8 C 0 s micMur3.chrUn_NW_017968520v1 1774415 563 + 3286835 A-TTT------------------------------------------------------------------CTTAAACT---------------------------------------------------------------TTCCTAACATAAATGCTTTGCTTT-AAAAATGGCCTAGAAGGGAATTTCCTCTACAATTATTTGGGTTAAAATG-----------TAAAAATTAGGTAGTCATTTGG-GGCAATGTGTAGCTCTTCTTGTTGTGGTGGTAATAATCTCCATTTCTACATATTTTTACAGTCATAGCATTC----TACCCATAGTTTTCCCTGGAGCCATAAATGACCAG--GCTGGTGCCATCAAATGCTCTCACAA------------------CATGTCCTTATCTTAT-TTGCTGCCATTTAGCCAATGCACAGAAAACAACATATAAATGAGGTTTCTT--TTACAGAGGCAGATGTAACTTGAT-------GAAAAACCTGCCAGTGATTCATTTTACTAGATATT------ACGTATTAAGTGCATACAAGCTGGAACGGAAGTTCCCTG-------------------------------------------AAAAAAATGGAAGGATATCCTCTCTC-CCCAGCATAATTATATAAATGGCCTCACAATCTTGGCATAGAAGCCCTTAGAAC-TTGAAAAAGGCTTAGAGAAGAACTACTAACA-TGTCTATGGAGTTAGAAAGAAAGC--CCTCGGAAGAAA----AATACTAGCAC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1863306 582 + 4188776 A-TTT------------------------------------------------------------------CTTAAACT---------------------------------------------------------------TTCCTAATGCAAATGCTTTGCTTT-AAAAATGGCCTAGAAGGGAATTTCCTGTATAATTATTTGAGTCAAAATA-----------TAAAAATTAGGTAGTGATTTGG-GGAAATCTGTAGCCCTTCTTGTTGTGGTGGTAATAATCTCCATTTCTACATATTTGTACAGTCATAACATTC----TACCCATAGTTTTCCCTGGAGCCATAAATGACCAT--GCTGGTGCCATCAAATGCTCTCACAACAAGTGGACAAGGATGATCATGTCCTTATCTTAT-TTGCTGCCATTTAGCCAATGTAGAGAAAACAACATATAAATGAGGTTTCTT--TTACAGAGGCAGCTGTAACTTGAT-------GAAAAACCTGCCAGTGATTCATTTTACTAGATATT------ATGGATTAAGCGCACACAAGCTAGAACGGAAGCTCCCTG-------------------------------------------AAAAAAATTGAAGGATATTCTCTCTC-CCCAGCATAATTATATAAATGGCCTTACAATCTTGTCACAGAAGCCCTTAAAAC-TTGAAAAAGGCTCAGAGAAGAGCTACCAACATTATCTATGGAGTTAGAAAGAAAGC--CCCTGGATGAAA----AATACCAGCAC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8600892 574 + 8790067 ATTTT------------------------------------------------------------------TTTAAACT---------------------------------------------------------------TCCCTAATGCAAACACTTTGCTTT-AAAAATGGCCTAGCAGAGACTTTCCTCTGCAATTACTTTAGTTAAAATA-----------TAAAAA-TAGACAGTGATGTGG-GGAAGTCTGTAGCTTTTCTTGTT------GTAATTATTGAAATTTCTACATATTTGTACAGTCACAGAATTC----CATCCACAGTTTTTCCTGGAGTCATAAATGACTGT--GCTGGGTCCATCAAGTGCTCTCACAACATTTGGACAAGGATGTTCATGTCCTTACCTTGT-TTGCTGCCATTTAGCCAATGCAGAGGAAACAGCACATAAAGGAGGTTTCTT--TTATAGAGGCAGCTTTAACTGGATTAAGAAAAAAAAACTTGCCAGTGACTTATTTCACAAGATATT------AGGTACGAAGTGCACACAAGTTGGAAGGGAAGTTCCCTG-------------------------------------------AGAAAAGCTGAAGGCTCTCCTCTTAC-TCCAGCATAATCAC-TTCATGGCCTTATAGTCCTGGGATGGAAGCCCTTGAAA---TGTAAAGAGCTCAGAGAAGAGCTACCAAGA-TCTCTACGGAGTTAGAAAG-------TCCTCATTAGAA----GATACTGTCAC i otoGar3.GL873602 C 0 I 391 s mm10.chr5 76406718 688 + 151834684 A-TTTAAGTTTGTCTCATTCTTGTTCACACATAATGGTAAAAAATAAAGTGAGAGTAAACACACTTTACAATTATAGCT---------------------------------------------------------------TTCTTAACAGATCTGCTTTACTTTTTAAAATGGCCTAGAAGGGAATTTCCTCCATAATTATTTTAGACA-AATA-----------AAGAGATGAGGTAGTGATTTGG-GGCTATCGGTAGCTTTTTATGTTGCAATCGTGAGAACCTACAGTCCCATACATCTGTGCAGTCATAATCCTC----CACCCACACTTGCCCC--AAGTCACAAATGATGGTGGGCAGGTGCCACCGGTTGCTCCCACATCATTTGGTAAGTAAGGATTATTCCCTCGTCTCAT-TTGCTACA--TTAGCCAGTGTCCAGGGCAGGATACAGAAATGAGCTCTCTT--TCTCAGGGGCCGCTGGGACCTAAT-------GAAAAATCTACCAGGGGTTCATTG-ATCAG------CTATGATGTATCAAGTACCCCTAAGTGGGGATGGAAGCTTCCTGAAAACAaaacaaacagaacaaaccaaaaaacaaacaaacaacaaaaaaacCCCAAAGATATCCCATGTCTCCCAGCCCAGCTGTCGAAAAGGCCTCACTGTGTAGCTAGAGAAGCTCATGGGAC-TTGAAAAGAGGGAAGAGAGGAGTTACCAAGA-TATTCAGAGAGTTTGGAGGAAAGTTTTCTTTAATAAAAGTGTAAGAC------ i mm10.chr5 C 0 C 0 s canFam3.chr13 47973802 634 + 63241923 C-TTT------------------------------------------------------------------TCCTTATTCTTTCTTCGTGCATAAAGatataaataaaaattaaattaaatattcttatattttaaaaaaaGTTCCTAATGCAAATGCTTTGCTCT-TAAAATGGCCTAGAAGGGACTTTCCTCTACAATTATTTTGGTCAAAATA-----------CAAAAACTAGGTATTGATTGGGGGAAAATCAGTAGCTTTTTACATTGCTATGATAATAATCTACATTTTCACATATTTGTACAGTCATAACATTC----CACCCATAGTTTGCCCTGGAGCCATAAATGACTAT--GTTGGTGCCATCAGTTGCTCTTATGACATTTGGAAAATGA--------TCATTATCTTAT-TTGCTGCCATTTAGCCAATGTAGAGAAAACAGCTTAAAACTGTAGCCTCTT--TTACAGAGGCAGCTGTA-CTTGAT-------GAAAAA-CTGCCAAGGACTCATTTTACTAGATAAT------CTATATTAAGTATACACAAACTGGAATGGAAATTCCATG--------------------------------------------GAAAAATTAAGGGATACCCTGTCTC-CCCAACATAACTATATGAACAGTCTTCCAGCCTTGGCAGTAGAAACTGTTGAACTTTGAAGAAAACTTGGTGAAAAGCTACCAAGG-TATCTATGAAGTTAGAAAGGAAGT--CTTTGAATAAAA----AATATTAGCA- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4088176 579 - 5279953 A-TTT------------------------------------------------------------------TTTAAAGT---------------------------------------------------------------TTCCTAACGTAAATGCTTTGCTTTAAAAAAGGGCCTAGCAGGGATTTCCCATGACAATAATTTTGGTCAAAATA-----------TAGAAATTAGGTGATGATTTGG-GGAAATCTGTAGCCTTTTATGTTGCCATGGTGA-AATCTCCATTTCCACACACTTGTACAGTCATAACATTC----CATCTGTAGTTTGCCCTGGAGCCATAAATTACTAT--GTT-GTGCCAGCAGTTACTCTCCCAACATTTGGAAAATGACGATCATTTCCTCCTCTGATGTTGCTGCCTTTTAGCCAATGTAGAGAAGACAACAT-CAAATGAGGTTTCTTTGTCACAGTGGCAGCTGTAACTTAAT-------GAAATG-CTGCCAGGGATTCATT------GACTTT-GTGTTATGGATTAAGCACACATAAGCTGGACTGGAAATTCCCTG--------------------------------------------GAAATTTTGAGGAATACCCTGTGTC-CTCAGCATCATTGTATAAATGGTCTCACTGTCTTGCCATAGAAACCATCAAAAC--TAGAAAAGGTCCAGAGAAGAGCTACCAAGA-TATCTGTGGAGTTAGAAAGAATAG--TATTTGATGAAAA---AATATTAGCAC i dasNov3.JH568349 I 114 C 0 a score=370893.000000 s hg38.chr4_KI270787v1_alt 47554 25 + 111943 CATCAAGATTACACTGTTGCCTGAT s panTro5.chr4 119612594 25 - 194502333 CATCAAGATTACACTGTTGCCTGAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121026004 25 - 195804263 CATCAAGATTACACTGTTGCCTGAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4457276 25 - 17550833 CATCAAGATTACACTGTTGCCTGAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69330035 25 - 118206036 CATCAAGATTACACTGTTGCTTGAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111533924 25 - 190429646 CATCAAGATTACACTGTTGCCTGAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110702063 25 - 189454096 CATCAAGATTACACTGTTGCCTGAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13270125 25 + 26754465 CATCAAGATTACACTGTTGCCTGAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4171395 25 - 5137665 CATCAAGATTACACTGTTGCCTGAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122886242 25 - 135778131 CATCAAGATTACACTGTTGCCTGAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1988076 25 + 2427316 CATCAAGATTACACTGTTGCCTGAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1281637 25 + 1448899 CATTAAGATTACACTGTTGCCTGAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53003474 25 - 190850796 AATCAAGATTACACTGTTGTCTAAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8167079 25 - 15139346 AATCAAGATTACACTGTTGCCTAAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6950777 25 - 7304997 AATCAAGATTACACTGTTGCCTAAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9368816 25 - 11631747 AATCAAGATAACACTGTTGCCTAAT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1774978 25 + 3286835 AATCAAGAATATGCTGTTGCCTAAT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1863888 25 + 4188776 AACCAAGAATACGCTGTCACCTAAT i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76407406 25 + 151834684 AATTGCAACCATGCTGTTACCTGAT i mm10.chr5 C 0 I 16 s canFam3.chr13 47974436 25 + 63241923 AGTTAAGAATACACTGTTGCCCATT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4088755 25 - 5279953 AATAGAGAATACACTGTTACCTCAT i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8601466 391 + 8790067 I a score=17290.000000 s hg38.chr4_KI270787v1_alt 47579 1 + 111943 T s panTro5.chr4 119612619 1 - 194502333 T i panTro5.chr4 C 0 C 0 s panPan2.chr4 121026029 1 - 195804263 T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4457301 1 - 17550833 T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69330060 1 - 118206036 T i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111533949 1 - 190429646 T i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110702088 1 - 189454096 T i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13270150 1 + 26754465 T i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4171420 1 - 5137665 T i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122886267 1 - 135778131 T i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1988101 1 + 2427316 T i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1281662 1 + 1448899 T i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53003499 1 - 190850796 T i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8167104 1 - 15139346 T i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6950802 1 - 7304997 T i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9368841 1 - 11631747 T i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1775003 1 + 3286835 T i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1863913 1 + 4188776 T i proCoq1.NW_012140747v1 C 0 C 0 s canFam3.chr13 47974461 1 + 63241923 T i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4088780 1 - 5279953 T i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76407431 16 + 151834684 I e otoGar3.GL873602 8601466 391 + 8790067 I a score=4623835.000000 s hg38.chr4_KI270787v1_alt 47580 327 + 111943 TCTACAGACACACAATAGTAAGGAGTAGGTGATTTCATGAGAGTA-TGGGTAAGTCAG--GACTGAATTATTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGGTCTCTGAATGTTTC-----------CTCGTCC-AAAAGCCACAGCTTTGCCCTGGGTCGGGTCTGTATTC-CAGGAGAGCAGGCACT----------------------------------------------------------------------------------------GTCTATCATGTGGGACATGACTAGTGTTCAATAAATATTTGTAACACTTGGCTTCATCttatattcctatatttatttttcttacatttgcattttctcatttatattgta--ttttcttctataGATTTCCTTTATGGA----ACAGGGAGGG-TTA s panTro5.chr4 119612620 326 - 194502333 TCTACAGACACACAATAGTAAGGAGTAGGTGATTTCATGACAGTA-TGGGTAAGTCAG--GACTGAATTATTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGGTCTCTGAATGTTTC-----------CTCGTCC-AAAAGCCACAGCTTTGCCCTGGGTCGGGTCTGTATTC-CAGGAGACCAGGCACT----------------------------------------------------------------------------------------GTCTATCATGTGGGACATGACTAGTGTTCAATAAATATTTGTAACACTTGGCttcatcttatattcctatatttatttttcttacatttgca-tttctcatttatattgta--ttttcTTCTATAGATTTCCTTTATGGA----ACAGGGAGGT-TTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121026030 326 - 195804263 TCTACAGACACACAATAGTAAGGAGTAGGTGATTTCATGACAGTA-TGGGTAAGTCAG--GACTGAATTATTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGGTCTCTGAATGTTTC-----------CTCGTCC-AAAAGCCACAGCTTTGCCCTGGGTCGGGTCTGTATTC-CAGGAGAGCAGGCACT----------------------------------------------------------------------------------------GTCTATCATGTGGGACATGACTAGTGTTCAATAAATATTTGTAACACTTGGCttcatcttatattcctatatttatttttcttacatttgca-tttctcatttatattgta--ttttcTTCTATAGATTTCCTTTATGGA----ACAGGGAGGT-TTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4457302 327 - 17550833 TCTAGAGACAGACAATAGTAAGGAGTAGGTGATTTCATGAGAGTA-TGGGTAAGTCAG--GACTGAATTATTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGGTCTCTGAATGTTTC-----------CTGATCC-AAAAGCCACAGCTTTGCCCTGGGTCGGGTCTGTATTC-CAGGAGAGCAGGCACT----------------------------------------------------------------------------------------GTCTATCATGTGGGACATGACTAGTGTTCAATAAATATTTGTAACACTTGGCTTCATCTTATATTCCTATATTTATTTTTCTTACATTTGCGTTTTCTCATTTATATTGTA--TTTTCTTCTATAGATTTCCTTTATGGA----ACAGGGAGGG-TTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69330061 327 - 118206036 TCTAGAGACAGACAATAGTAAGGAGTGGGTGATTTCATGAGAGTA-TGGGTAAGTCAG--GACTGAATTATTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGGTCTCTGAATGTTTC-----------CTGGTCC-ATAAGCCACAGCTTTGCCCTGGGTGGGGTCTGTATTC-CAGGAGAGCAGGCACT----------------------------------------------------------------------------------------GTCTATCATGTGGGACATGACTAGTGTTCAATAAATATTTGTAACACTTGACttcatcttatattcctatatttatttttctttcatttgcattttctcatttatattata--ttttcTTCTATAGATTTCCTTTATGGA----ACAGGGAGGG-TTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111533950 327 - 190429646 TCTAGAGACAGACAATAATAAGGAGTGGGTGATTTCATGAGAATA-TGGGTAGGTCAG--GACTGAATGATTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGGTCTCTGAATGTTTC-----------CTGGTCC-ATAAGCCACAGCTTTTCCCTGGGTCGGGTCTGTATTC-CAGGAGAGCAGGCACT----------------------------------------------------------------------------------------GTCTATCATGTGGGACATGACTAGTGTTCAATAAATATTTGTAACACTTGGCTTCATCttatattcctatatttatttttctctcatttgcattttctcatttatattata--ttttCTTCTATAGATTTCCTTTATGGA----ACAGGGAGGG-TTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110702089 327 - 189454096 TCTAGAGACAGACAATAATAAGGAGTGGGTGATTTCATGAGAATA-TGGGTAGGTCAG--GACTGAATGATTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGGTCTCTGAATGTTTC-----------CTGGTCC-ATAAGCCACAGCTTTTCCCTGGGTCGGGTCTGTATTC-CAGGAGAGCAGGCACT----------------------------------------------------------------------------------------GTCTATCATGTGGGACATGACTAGTGTTCAATAAATATTTGTAACACTTGGCTTCATCttatattcctatatttatttttctctcatttgcattttctcatttatattata--ttttCTTCTATAGATTTCCTTTATGGA----ACAGGGAGGG-TTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13270151 327 + 26754465 TCTAGAGACAGACAATAATAAGGAGTGGGTGATTTCATGAGAATA-TGGGTAGGTCAG--GACTGAATGATTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGGTCTCTGAATGTTTC-----------CTGGTCC-ATAAGCCACAGCTTTTCCCTGGGTCGGGTCTGTATTC-CAGGAGAGCAGGCACT----------------------------------------------------------------------------------------GTCTATCATGTGGGACATGACTAGTGTTCAATAAATATTTGTAACACTTGGCTTCATCTTATATTCCTATATTTATTTTTCTCTCATTTGCATTTTCTCATTTATATTATA--TTTTCTTCTATAGATTTCCTTTATGGA----ACAGGGAGGG-TTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4171421 327 - 5137665 TCTAGAGACAGTCAATAATAAGGAGTGGGTGATTTCATGATAATA-TGGGTAGGTCAG--GACTGAATGATTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGGTCTCTGAATGTTTC-----------CTGGTCC-ATAAGCCACAGCTTTGCCCTGGGTCGGGTCTGTATTC-CAGGAGAGCAGGCACT----------------------------------------------------------------------------------------GTCTATCATGTGGGACATGACTGGTGTTCAATAAATATTTGTAACACTTGGCTTCATCttatattcctatatttatttttctctcatttgcattttctcatttatattata--ttttCTTCTATAGATTTCCTTTATGGA----ACAGGGAGGG-TTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122886268 327 - 135778131 TCTAGAGACAGACAATAATAAGGAGTGGGTGATTTCATGAGAATA-TGGGTAGGTCAG--GACTGAATGATTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGGTCTCTGAATGTTTC-----------CTGGACC-ATAAGCCACAGCTTTGCCCTGGGTCGGGTCTGTATTC-CAGGAGAGCAGGCACT----------------------------------------------------------------------------------------GTCTATCATGTGGGACATGACTAGTGTTCAATAAATATTTGTAACACTTGGCTTCATCttatattcctatatttatttttctctcatttgcattttctcatttatattata--ttttCTTCTATAGATTTCCTTTGTGGA----ACAGGGAGGG-TTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1988102 327 + 2427316 TCTAGAGACAGACAATAATAAGGAGTGGGTGATTTCATGATAATA-TGGGTAGGTCAG--GACTGAATGATTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGGTCTCTGACTGTTTC-----------CTGGTCC-ATAAGCCACAGCTTTGCCGTGGGTCGGGTCTGTATTC-CAGGAGAGCAGGCACT----------------------------------------------------------------------------------------GTCTATCATGTGGGACATGACTAGTGTTCAATAAATATTTGTAACACTTGGCTTCATCTTATATTCCTGTATTTATTTTTCTCTCATTTGCATTTTCTCATTTATATTATA--TTTTCTTCTATAGATTTCCTTTATGGA----ACAGGGAGGG-TTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1281663 327 + 1448899 TCTAGAGACAGATAATAGTAAGGAGTGGGTGGTTTCATGAGAATA-TGGGTAGGTCAG--GACTGAATTATTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGATCTCTGAATGTTTC-----------CTGGTCC-ATAAGCCACAGCTTTGCCCTGGGTCGGGTCTGTATTC-CAGGAGAGCAGACACT----------------------------------------------------------------------------------------GTCTATCATGTGGGACATGACTAGTGTTCAATAAATATTTGTAACACTTGGCTTCATCTTATATTCCTATATTTATTTTTCTCTCGTTTGCATTTTCTCATTTATATTATA--TTTTCTTCTATAGATTTCCTTTATGGA----ACAAGGAGGG-TTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53003500 303 - 190850796 TCTGGAGAC-------AGTAATGAGCAGATGATTTCATGAGAATA-TGGGTAGGTCAG--GGCTGAATTATTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGGTTTCTGAGTGCTTC-----------CTGGGCC---CAGCCACAGCTTTGCCCTGGGTCGGG-------TC-CAGGAGAGCAGGCACT----------------------------------------------------------------------------------------GTCTAGCATATGGGACATGACTAGTATTCAATAAATATTTGTAA-------CTTCATCTTATATTCCTATATTTATTTTTCTTTCATTTGCA-TTCCTCATTTATATGATA--TTTTCTTCTACAGAATTCCTTTATGGA----ATAAGGAGGG-TTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8167105 319 - 15139346 TCTGGAGACAGACAAGAGTAATGAGTGGGTGATTTCATGAGAATA-TGGGTAGGTCAG--GGCTGAATTATTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGGTATCTGAGTGCTTC-----------CTGGTCC-ATAAGCCACAGCTCTGTCCTGGGTAGGG-------TC-CAGGTGAGCAGGCACT----------------------------------------------------------------------------------------GTCTAGCATGTGGGACATGACTAGTGTTCAATAATTATTTGTAACACTTGGCTTCATCTAATATTCCTACATTTATTTTTCTTTCATTTGCA-TTCCTCATTTATGTGATA--TTTTCTTCTATAGAATTCCTTAATGGA----ACAAGGAGGG-TTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6950803 320 - 7304997 TCTGGAGACAGGCAACAGTAATGAGTGGGTGATTTCATGAGAACA-TGGGTAGTTCAG--GGATGAATTATTAACACTAAAACTCTGGTGAAGGTTTGAAGCCGGTCTCTGAGTGCTTC-----------CTGGTCC-ATAAGCCACAGCTTTGCCCTGGGTAGGG-------TC-CAGGTGAGCAGGCACT----------------------------------------------------------------------------------------GTCTAGCATATGGGACATGACTAGTGTTAAATAAATATTTGTAACACTTGGCTTCATCTAATATTCCTACATTTATTTTTCTTTCATTTGCA-TTCCTCATTTATATGATA--TTTTCTTCTATAGAATTCCTTTAGGGA----ACAAGGAGGGTTTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9368842 320 - 11631747 TCTGGAGACAGACAAGAGTAATGAGTGGGTGACTTCATGAGAACATTGGGTAGGTCAG--GGCTGAATTTTTAACACTAAAACTCTGGTGAAGGTTTGAAGCTGGCCTCTGAGTGCTTC-----------CTGGTCC-ATAAGCCACAGCTTTGCCCTGGGTAGGG-------TC-CAGGTGAGCAGGCACT----------------------------------------------------------------------------------------GTCTAGCATGTGGGACATGACTAGTGTTCAATAAATATTTGTAACACTTGGCTTCATCTAATATTCCTATGTTTATTTTTCTTTCGTTTGCA-TTCCTCATTTATATGATA--TTTTCTTCTATAGAATTCCTTTATGGA----ACAAGAAGGG-TTA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1775004 339 + 3286835 TCTAG-GACAAACAATGATAAGAAGTGAGTGATTTGGTAAGAAGA-TGGGTAGGTCGG--GGCTGAATTATTAACACCAAAACTCAGGTGATGGTTTGAAGCTGGTCTCTGAATGCCTCCTGGGGTTGAACTGGTCC-ATAAACCACAGCTTTGCCCTGACTGTGGTCTGCATTC-CAGGAGGGCAGGCACT----------------------------------------------------------------------------------------GCCTAGCATGTGGGACATGGCTAGTACCCAATAAATACGTATAGCACTTGGTTTCATCTTACATACTTATATTTATTTTCCTTTCATTACCATTTTCTCATTTATTTTATATTTTTTCTTCTATAGATTTCCTTGATGGA----ACAAGGAGTG-TTA i micMur3.chrUn_NW_017968520v1 C 0 I 21 s proCoq1.NW_012140747v1 1863914 336 + 4188776 TCTAG-GACAAACAATAGTAAGAAGTGGGTGATTTAGTGAGAAGA-TGGGTAGG-CTG--GGCTGAATTATTAATACCAAAACTCTGGTGGTGGTTTGAAGCTGGTCTCTGAGCGCTTCCTAGAGTTGAACTGGTCC-ATAAACCACAGCTTTGCCCTGACTCCGGTCTGCATTC-CAGGAGAGTAGGAACT----------------------------------------------------------------------------------------GTCTAGCATGTGGGACATGGCTAGTACCCAAAAAATACGTATGGCACTTGGTTTCATCTTATATGCCTATATTTATTTTCCTTTCATTATCATTTTCTCATTTATTTCATA--TTTTCTTCTATATATTTCCTTCATGGA----ACAAGGAGTG-TTA i proCoq1.NW_012140747v1 C 0 I 21 s otoGar3.GL873602 8601857 417 + 8790067 TCTAGAGCCAAACAATAGTAAGAAGTGGGTGAATGAGTGAG-AGA-TGGGTAGG-TGG--GACTGAATTATTAATACT-AAACTCTGCTGATGGTTTGAAGATGGTCTCTGCATGCTTTGTAGGATGGAATTGGTCC-ATAAACCACAGCTTTGCCCTCACTCAGGTCTGCATTC-CAGGAG-GCAGGCACTGTCtagaacagtggttctcaaccttcctaatgccgcgaccgtttaataaagtccaaaggggtcactacccacaggttgagaaccactgGTCTAGAATGTGAGACATGGGTAGTACCCAATAGACATGTATAACATTCGTTTTCATCTTATATCCCTGTATTTTT-----TTTCATTACCATTTTATCATTTATTTCACA--TTTTCTTCTATAGATTTCTTTCATGGA----GTAAGGAGGG-TTA i otoGar3.GL873602 I 391 I 20 s canFam3.chr13 47974462 326 + 63241923 TCT--------ACGCTA-----GAGTGGGTAAATTAGCAAGAAGA-TAGGTAGG---A--GGCTAAATTACTAAAATCAAATCTCTATTGATGGTTTGAAGTGGGTCCCTGGGTACTTCTGAAAGTTGAACTGGTCCTTTAATGCATATATCTGCCCTGACTCAATTCTGCATTC-CAGGAGAGCAGAGACT----------------------------------------------------------------------------------------GTCTAGCATGTGAGATATGGCAAGTATCCACTAAATATTTGTAGCAGTAGGCTTCATCTTATAGTCCTATCTTTGTTTTCCTTTCATTGCCATTTTCTCATTTATTTTCTA---GTTCTTCTATAGGTTTCCTTCATGGAAGGGACAGGAAGGA-CTA i canFam3.chr13 C 0 I 21 s dasNov3.JH568349 4088781 326 - 5279953 TCTAGAGGCTAATAATAGTAATAAGTGGGTGATTTAGTGAGAAGA-TGGGTA-GTTAGCTGGCTGAATTATTGACACCAACACTCTGGCTGTGGTTGGAAG------------TGCTTCCTAGGATTGAACTGGTCT-ATAGGACACAGCTCTTCCATGGCTCAAT--TACATTCTCAGGAGAGCAGAGACC----------------------------------------------------------------------------------------ATCTTGCATGGTGCACATAACAAGTA-CCAATAAATGTAGGTAACAGTGAGCTTCACTTTATATTTCTGTATTTATTTTCCTTTCATTCCCATTTTCTCATTTCTTTTCTA-TTTTTTTTCTATAGGCTTCCTTTGAGGA----ACAAGGAAAG-TTA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76407431 16 + 151834684 I a score=2413129.000000 s hg38.chr4_KI270787v1_alt 47907 160 + 111943 ---------------------TAAATTAAATGTTGTTGAAGAG-AAAAGGAAGAAAATAAAATGGGAGGGCCATAAAGAACTTACAAACAAAGGTGCAATGTATGGGGT-TTGAAGGATGGAAAAATCACCTATCGATGGATGAGCCAGGAGAGGTTTCATGGAAGAGGTGATTTTTGACATG s panTro5.chr4 119612946 160 - 194502333 ---------------------TAAATTAAATGTTGTTGAAGAG-AAAAGGAAGAAAATAAAATGGGAGGGCCATAAAGAACTtacaaacaaaggtgcaatgtatggggt-ttgaaggatggaaaaatcacctatcgatggatgagccaggagaggtttcatggaagaggtgatttttgacatg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121026356 160 - 195804263 ---------------------TAAATTAAATGTTGTTGAAGAG-AAAAGGAAGAAAATAAAATGGGAGGGCCATAAAGAACTtacaaacaaaggtgcaatgtatggggt-ttgaaggatggaaaaatcacctatcgatggatgagccaggagaggtttcatggaagaggtgatttttgacatg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4457629 160 - 17550833 ---------------------TAAATTAAATGTTGTTGAAGAG-AAAAGGAAGAAAATAAAATGGGAGGGCCATAAAGAACTtacaaacaaaggtgcaatgtatggggt-ttgaaggatggaaaaatcacctatcgatggaggagccaggagaggtttcatggaagaggtgatttttgacatg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69330388 160 - 118206036 ---------------------TAAATTAAATGTTGTTGAAGAG-AAAAGGAAGAAAATAAAATGGGAGGGCCATAAAGAACTTACAAACAAAGGTGCAATGTATGGGGT-TTGAAGGATGGAGAAATCACCTATCGATGGAGGAGCCAGGAGAGGTTTCATGGAAGAGGTGATTTTTGACATG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111534277 161 - 190429646 ---------------------TAAATTAAATGTTGTTGAAGAGTAAAAGGAAGAAAATAAAATGGGAGGGCCATAAAGAACTtacaaacaaaggtgcaatgtgtggggt-ttgaaggatggagaaatcacctatcgatggaggagccaggagaggtttcatggaagaggtgatttttgacacg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110702416 161 - 189454096 ---------------------TAAATTAAATGTTGTTGAAGAGTAAAAGGAAGAAAATAAAATGGGAGGGCCATAAAGAACTTACAAACAAAGGTGCAATGTGTGGGGT-TTGAAGGATGGAGAAATCACCTATCGATGGAGGAGCCAGGAGAGGTTTCATGGAAGAGGTGATTTTTGACACG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13270478 161 + 26754465 ---------------------TAAATTAAATGTTGTTGAAGAGTAAAAGGAAGAAAATAAAATGGGAGGGCCATAAAGAACTtacaaacaaaggtgcaatgtgtggggt-ttgaaggatggagaaatcacctatcgatggaggagccaggagaggtttcatggaagaggtgatttttgacacg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4171748 161 - 5137665 ---------------------TAAATTAAATGTTGTTGAAGAGTAAAAGGAAGAAAATAAAATGGGAGGGCCATAAAGAACTtacaaacaaaggtgcaatgtgtggggt-ttgaaggatggagaaatcacctatcgatggaggagccaggagaggtttcatggaagaggtgatttttgacacg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122886595 161 - 135778131 ---------------------TAAATTAAATGTTGTTGAAGAGTAAAAGGAAGAAAATAAAATGGGACGGCCATAAAGAACTTACAAACAAAGGTGCAATGTATGGGGT-TTGAAGGATGGAGAAATCACCTGTCGATGGAGGAAGCAGGAGAGGTTTCATGGAAGAGGTGATTTTTGACACG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1988429 161 + 2427316 ---------------------TAAATTAAATGTTGTTGAAGAGTAAAAGGAAGAAAATAAAATGGGAGGGCCATAAAGAACTtacaaacaaaggtgcaatgtgtggggt-ttgaaggatggagaaatcacctattgatggaggagccaggagaggtttcatggaagaggtgatttttgacacg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1281990 161 + 1448899 ---------------------TAAATTAAATGTTGTTGATGAGTAAAAGGAAGAAAATAAAATGGGagggccataaaggacttacaaacaaaggtgtaatgtatgggat-ttgaaggatggagaaatcacctatcgatggaggagccaggagaggtttcatggaagaggtgatttttgacatg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53003803 161 - 190850796 ---------------------TAAATTAGATGTTGTTGAAGAGTAGAAAGAAGAACATGAAAACGGAGAGCCATAAAGAATGTATAAACAACAGTGCTACATATAGGGC-TTGAAGGATGAAGAAATCACCTATTGATGGAGGAGGCAAGAGGGGTTTCATGGAAGAGGCTATCTTTGACATG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8167424 161 - 15139346 ---------------------TAAATTAAACGTTGTTGAAGAGTAAAAAGAAGAACATAAaatgggagagccataaagaacttataaacaaaggtgctacatatagggc-ttgaaggatgaagaaatcacctatcgatggaggagccaggaggggtttcatggaagaggtgatctttgacatg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6951123 160 - 7304997 ---------------------TAAATTAAATGTTGTTGAAGAGTAAAAAGAAGAACATAAAAAGGGAGAGCCATAAAGAACTTATAAACAAAGGTGCTACATAGAGGGC-TTGAAGGCTGGAGAAATCGCCTATCGATGGAGGAGCCAGGAGGGGTTTCAT-GAAGAGGTGATCTTTAACATG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9369162 161 - 11631747 ---------------------TAAATTAAATGCTGTTGAAGAGTAAAAAGAAGAACATAAAAAGGGAGAGCCATAAAGAACTTATAAACAAAGGCGCTACAtatagggc-ttgaaggatggagaaatcacctatcgatggaggagccaggaggggtttcatggaagaggtgatctttgacatg i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1775364 153 + 3286835 ---------------------taaatcaaatgttg---aagagtaaaaagaagaatgtaaaaggtgagggccagaagggatttacgaacaaaggag-----tatggggt-ttgaagggttgggaaatcacatatagctggaggggccagaagaggtttcacagaagaggtgacttttgacatg i micMur3.chrUn_NW_017968520v1 I 21 C 0 s proCoq1.NW_012140747v1 1864271 153 + 4188776 ---------------------TAAATTAAATGTCG---AAGAGTAAAAGGAAGAACGTAAAAGGTGAGGGCCAGAAGGGACTtacaaacaaaggtg-----tatggggt-ttgaagggtggagaaatcacatatggctggaggagcaagaagagctttcacagaagaggtgacttttgaCATA i proCoq1.NW_012140747v1 I 21 C 0 s otoGar3.GL873602 8602294 154 + 8790067 ---------------------TAAATTAAATGTTGTTAAAGAGTAAAAGGAAGAATGTAAAAGGTGGGGGCCATAAAGGACTTAAAAACGAAGGTG-----TGTGGGGT-TTGGAGGATGGGGAAATCACAAA--ACTGGAGAAGTCAGGAACCGTTTCACAGAAGAGGTGATTTCCGACATG i otoGar3.GL873602 I 20 C 0 s mm10.chr5 76407447 132 + 151834684 ---------------------TATATCAAATGTTCTGAAA----AATAAGAAGACTGTCCCCGGGAAGGGACAT-------------ACAAATGTGT----CATGGAGC-TCAAAGGCTGAAGAAGTCACATA--GACAGAGGAACCAGGAGAGGTTCCAT------GGTGACTTCCAACACG i mm10.chr5 I 16 I 1026 s canFam3.chr13 47974809 156 + 63241923 ---------------------GAAGTGAAATGTTGTTAAAG-GTAAAAGGAAGAATgtaagtggtgagtgccataaaggacttataaaccaacgtgc----tgtggggtctcaaaagatgcagaattcatacacagatggaggagccaggggaggtttcatggaagaagtgat-tttgacatg i canFam3.chr13 I 21 C 0 s dasNov3.JH568349 4089107 173 - 5279953 CAAATAAATACTACATATAAATATATTAAACGTTGTTGAATAGCAAAAGGAAGAATTTAAATAGTGTGGACCATAAAAGACTTACTAACAAA-GTGC----TGTGAGGC-TCAAAACATGGGGAAAGCACATATGGATGGAGGAGCCAGAAG---TTTCACGGAAGGGGTGAT-TTTAATATG i dasNov3.JH568349 C 0 C 0 a score=4016153.000000 s hg38.chr4_KI270787v1_alt 48067 266 + 111943 ATTATAATCAGTAGGTAGTAGTGTGACTGGCAGAGAGGATTCTGAAAGGTGAAGACAGCCAGGCCTTC------CA-----ATTCATCAAAACAAA-TTTGTACTCAA----ATATTTATTG-ATTCTGAAAAAGAAACTGAAAAGT-ACAAAATATAACAA--TATAACCTGTAG----TATTGGCATAAGGAACAGTGAACCAGAAAGGCTATCTTTTCTCTGGGCCAAGAGGAAAATAATGGGAGATTCCTGTTGAGAGAGGAAAACAAATTTATCAGAATTTAGAA s panTro5.chr4 119613106 266 - 194502333 attataatcagtaggtagtagtgtgactggcagagaggaTTCTGAAAGGTGAAGACAGCCAGGTCTTC------CA-----ATTCATCAAAACAAA-TTTGTACTCAA----ATATTTATTG-ATTCTGAAAAAGAAACTGAAAAGT-ACAAAATATAACAA--TATAACCTGTAG----TATTGGCATAAGGAACAGTGAACCAGAAAGGCTATCTTTTCTCTGGGCCAAGAGGAAAATAATGGGAGATTCCTGTTGAGAGAGGAAAACAAATTTATCAGAATTTAGAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121026516 266 - 195804263 attataatcagtaggtagtagtgtgactggcagagaggaTTCTGAAAGGTGAAGACAGCCAGGTCTTC------CA-----ATTCATCAAAACAAA-TTTGTACTCAA----ATATTTATTG-ATTCTGAAAAAGAAACTGAAAAGT-ACAAAATATAACAA--TATAACCTGTAG----TATTGGCATAAGGAACAGTGAACCAGAAAGGCTATCTTTTCTCTGGGCCAAGAGGAAAATAATGGGAGATTCCTGTTGAGAGAGGAAAACAAATTTATCAGAATTTAGAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4457789 265 - 17550833 attataatcagtaggtagtagtgtgactggcagagaggaTTCTGAAAGGTGAAAACAGCCAGGTCTTC------CA-----ATTCACCAAAACAAA-TTTTTACTCAA----ATATTTATTG-ATTCTGAAAAAGAAACTG-AAAGT-ACAAAATATAACAA--TATAACCTGTAG----TACTGGCATAAGGAACAGTGAACCAGAAAGGCTATCTTTTCTCTGGGCCAAGAGGAAAATAATGGGAGATTCCTGTTGAGAGAGGAAAACAAATTTATCAGAATTTAGAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69330548 255 - 118206036 ATTATAATCAGTAGGTAGTAGTGTGACTGGCAGAG-GGATT----------AAGACAGCCAGGTCTTC------CA-----ATTCATCAAAACAAATTTTTTACTCAA----ATATTCATTG-ATTCTAAAAAAGAATCTG-AAAGT-ACAAAATACAACAA--TATAACCTGTAG----TATCGGCGTAAGGAACAGTGAACCAGAAAGTCTATCTTTTCTCTGGGCCAAGAGGAAAATAATGGGAGATTCCTATTGAGAGAGGAAAACAAATTTTTCAGAATTTAGAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111534438 265 - 190429646 attataatcagtaggtagtagtgtgactggcagagaggaTTCTGAAAGGTGAAGACAGCCAGGTCTTC------CA-----ATTCATTAAAACAAA-TTTTTACTCAA----ATATTTATTG-ATTCTAAAAAAGAAATTG-AAAGT-ACAAAATATAGCAA--TATAACCTGTAG----TATCGGCATAAGGAACAGTGAACCAGAAAGTCTATCTTTTCTTTGGGCCAAGAAGAAAATAATGGGAGATTCCTATTGAGAGAGGAAAACAAATTTATCAGAATTTAGAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110702577 265 - 189454096 ATTATAATCAGTAGGTAGTAGTGTGACTGGCAGAGAGGATTCTGAAAGGTGAAGACAGCCAGGTCTTC------CA-----ATTCATTAAAACAAA-TTTTTACTCAA----ATATTTATTG-ATTCTAAAAAAGAAATTG-AAAGT-ACAAAATATAGCAA--TATAACCTGTAG----TATCGGCATAAGGAACAGTGAACCAGAAAGTCTATCTTTTCTTTGGGCCAAGAAGAAAACAATGGGAGATTCCTATTGAGAGAGGAAAACAAATTTATCAGAATTTAGAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13270639 265 + 26754465 attataatcagtaggtagtagtgtgactggcagagaggaTTCTGAAAGGTGAAGACAGCCAGGTCTTC------CA-----ATTCATTAAAACAAA-TTTTTACTCAA----ATATTTATTG-ATTCTAAAAAAGAAATTG-AAAGT-ACAAAATATAGCAA--TATAACCTGTAG----TATCGGCATAAGGAACAGTGAACCAGAAAGTCTATCTTTTCTTTGGGCCAAGAAGAAAACAATGGGAGATTCCTATTGAGAGAGGAAAACAAATTTATCAGAATTTAGAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4171909 265 - 5137665 attataatcagtaggtagtagtgtgactggcagagaggaTTCTGAAAGGTGAAGACAGCCAGGTCTTC------CA-----ATTCATTAAAACAAA-TTTTTACTCAA----ATATTTATTG-ATTCTAAAAATGAAATTG-AAAGT-ACAAAATATAGCAA--TATAACCTGTAG----TATCGGCATAAGGAACAGTGAACCAGAAAGTTTATCTTTTCTCTGGGCCAAGAAGAAAACAATGGGAGATTCCTATTGAGAGAGGAAAACAAATTTATCAGAATTTAGAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122886756 265 - 135778131 ATTATAATCAGTAGGTAGTAGCGTGACTGGCAGAGAGGATTCTGAAAGGTGAAGACAGCCAGGTCTTC------CA-----ATTCATTAAAACAAA-TTTTTACTCAA----ATATTTATTT-ATTCTAAAAAAGAAATTG-AAAGT-ACAAAATATAGCAA--TATAACCTGTAG----TATCGGCATAAGGAACAGTGAACCAGAAAGTCTATCTTTTCTTTGGGCCAAGAAGAAAATAATGGGAGATTCCTAGTGAGAGAGGAAAACAAATTTATCAGAATTTAGAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1988590 265 + 2427316 attataatcagtaggtagtagtgtgactggcagagaggaTTCTGAAAGGTGAAGACAGCCAGGTCTTC------CA-----ATTCATTAAAACAAA-TTTTTACTCAA----ATATTTATTG-ATTCTAAAAAAGAAATTG-AAAGT-ACAAAATATAGCAA--TATAACCTGTAG----TATCGGCATAAGGAACAGTGAACCAGAAAGTTTATCTTTTCTTTGGGCCAAGAAGAAAACAATGGGAGATTCCTATTGAGAGAGGAAAACAAATTTATCAGAATTTAGAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1282151 256 + 1448899 aTTATAATCAGTAGGTAGTAGTGTGACTGGCAGAGAGGATTCTGAAAGGTGAAGACAGCCAGGTCTTC------CA-----ATTCATTAAAACAAA-TTTTTACTCAA----ATATTTATTG-ATTCTAAAAAAGAAACTG-AAAGT-ACAAAATATAGCAA--TATAACCTGTAG----TATTGG--------ACAGTGAACCAGAAAGTCTATCTTGTCTTTGGGCCAAGAAG-AAATAATAGGAGATTCCTATTGAGAGAGGAAAACAAATTTATCAGAATTTAGAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53003964 265 - 190850796 ATTATAATCAGTAGGTTGTAGTGTGACTGGCAGAGAGGATTTGGAAAGGTGAAGACAGCCAGGTCTTC------CA-----ATTCATTAAAACAAC-TTTTTACTCAA----GTATTTATTG-ATTCTAAAAAAGAACCTT-AAAGT-ACAAAATATAACAG--TATAACCTCTAG----TATCAGCATAAGGAACAGTGAACCAGGAAGTCTATTTTTAATTTGGACCAAGAAGAGAATAATGGGAGATTCCTGTTGAGAGAGGAAAACAAATTTATCGTAATTTAGAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8167585 265 - 15139346 attataatcggtaggtagtagtgtgactagcagagaagattctgaaaggtgAAGACAGCCAGGTCTTC------CA-----ATTCACTGAAACGGC-TTTTTACTCAA----ATATTTATTG-ATTCTAAAAAAGAACCTT-AAAGT-ACAAAATATAAGAA--TATAACCTGTAG----TATCAGCATAAGGAACAGTGAACCAGGAAGTCTAGTTTTAATTTGGACCAAGAAGAGAATAATGGGAGATTCCTGTTGAGAGAGGAAAACAAATTTATCGTAATTTAGAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6951283 265 - 7304997 ATTATAATTGGTAGGTAGTAGTGTGACTGGCAGAGAGGATTCTGAAAGGTGAAGACAGCCAGGTCTTC------CA-----ATTCACTAAAACAAC-TTTTTACTCAA----ATATTTATTG-ATTCtaaaaaagaatctt-aaagt-acaaaatataacaa--tataaGCTGTAG----TATCAGCATAAGGAACAGTGAACCAGGAAGTCTATTTTTAATTTGGGCCAAGAAGAAAATAATGGGAGATTCCTGTCGAGAGAGGAAAACAAATTTATCATAATTTAGAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9369323 265 - 11631747 attataatcagtaggtagtagtgtgactggcagagaggaTTCTGAAAGGTGAAGACAGCCAGGTCTTC------CA-----ATTCACTAAAACAAC-TTGTTACTCAA----ATATTTATTG-ATTCTGAAAAAGAATCTT-AAAGT-ACAAAATATAACAA--TATAACCTGTAG----TATCAGCATAAAGAACAGTGAACCAGAAAATCTATTTTTAATTTTGGCCAAGAAGAGAATAATGGGAGATTCCTGTTGAGAGAGGAAAACAAATTTATCATAATTTAGAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1775517 265 + 3286835 gTTACAATCAGTCAGTAGGAGTGTGACTGGCACAGAGCATTCTGAAAGGTGAAGAGAGCCAAGTCTTCTATTAATA-----ATTCATTAAAA---A-ATTGTGCTCAGATACATATTGATTG-ATTCTAAAAGAGAACCTT-AAAGT-ACAAAATCTAACAA--TATGACCTGTAG----TATCGGCATAAGGAACAGTGAACC---AGGTCTATCT----TTTCGGCCACGAAGAGAATAAGGGGAGATTCCTATTGAGAGAGGAAAACAAATTGATCAGAATTTGGAA i micMur3.chrUn_NW_017968520v1 C 0 I 18 s proCoq1.NW_012140747v1 1864424 272 + 4188776 GTTACAATCAGTAGGTCAGAGTGTGACTGGCACAGAGGATTCTGAAAGGTGAAGAGAGCCAAGTCTTCTATTAATA-----ATTCATTAAAA---A-ATTTTACTCAAATACATATTGATTG-ATTCTAAAAGAGAACCTT-AAAGT-ACAAAATCTAACAA--TATGACCTGTAG----TATCGGCATAAGGAACAGTGAACCAAAAGGTCTATGTTTTCTTTCAGCCACGAAGAGAATAATGGGAGATTTCTGTTGAGAGAGAAAAACAAATTGATAAGAATTTGGAA i proCoq1.NW_012140747v1 C 0 I 17 s otoGar3.GL873602 8602448 271 + 8790067 GTTATAACCAGTAGGCC-GAGTGTGACCAGCACAAAGGATTCTGAAAGGGGAAGACAGCCAAATCTTC------TA-----ATTGATTAAAA-ATA-ATTTTACTCAAATACATACTGATTG-ATTTTAAAAGAGAACCTT-AAAGT-ACAAAATCTAACAA--TATGACCTGTAGTATCTATCGGCATAAGGAACAGTGAGCCAGAAAGTCTGTCTTTCCTTTTGGCCACGAAGAGAACAATGGGAGATTCCTGTGGTGAGAGGTAAACAAATTCATCAGAATTTAGGA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47974965 263 + 63241923 gctataagcaataggaagaagtgtgactggcagagaggaTTCTGAAAGATGAAGAGAGCCAAGTCTTC------TA-----ATTCATTCAAG--AA-GTGTTACTCAG----TTATTTACTG-ATTCTAAATGAGAAGCTT-AGGAT-GCAAAACATGACAA--TATAACCTGGAG----GATCAGCATAAAAAATAGCGAACCAGAAAGTCTATTGTTTCTTTTGGCCATGAAGAGAATAATGAGAGACTCTTGTTGAGAGAGGAAAACAAATTTATTAGAATTTAGAA i canFam3.chr13 C 0 I 2 s dasNov3.JH568349 4089280 267 - 5279953 GTTATAAGTAATATGTAGGAGTGTGACTGGCAGA--GGATTCTGAAAGCTGGAG--AGTCAAATCTTC------TAATCCCATTCATTTAAC--AA-TTTTTATTCAA----ATATTTATTTCCTTCTAAAAGAGAACCTT-AAGGCGACAAAATATAACAATTTATAGCCTGTAG----TATTGGCATAAGGAAGAGTGAATCAGAAAGTCTGTCTTCCTTCTGTA-CATGAAGAGAATAACAGGAGATTACTGTTGCAAAAGGAAAACAAATTTATCAGAATTTAGAA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76407579 1026 + 151834684 I a score=18143.000000 s hg38.chr4_KI270787v1_alt 48333 2 + 111943 TC s panTro5.chr4 119613372 2 - 194502333 TC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121026782 2 - 195804263 TC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458054 2 - 17550833 TC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69330803 2 - 118206036 TC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111534703 2 - 190429646 TC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110702842 2 - 189454096 TC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13270904 2 + 26754465 TC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4172174 2 - 5137665 TC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887021 2 - 135778131 TC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1988855 2 + 2427316 TC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1282407 2 + 1448899 TC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53004229 2 - 190850796 TC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8167850 2 - 15139346 TC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6951548 2 - 7304997 TT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9369588 2 - 11631747 TT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8602719 2 + 8790067 TA i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4089547 2 - 5279953 GC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1864696 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1775782 18 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e canFam3.chr13 47975228 2 + 63241923 I a score=108133.000000 s hg38.chr4_KI270787v1_alt 48335 10 + 111943 ATTCTCCAGA s panTro5.chr4 119613374 10 - 194502333 ATTCTCCCGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121026784 10 - 195804263 ATTCTCCCGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458056 10 - 17550833 ATTCTCCAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69330805 10 - 118206036 ATTCTCCAGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111534705 10 - 190429646 ATTCTCCAGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110702844 10 - 189454096 ATTCTCCAGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13270906 10 + 26754465 ATTCTCCAGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4172176 10 - 5137665 ATTCTCCAGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887023 10 - 135778131 ATTCTCCAGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1988857 10 + 2427316 ATTCTCCAGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1282409 10 + 1448899 ATTCTTCAGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53004231 10 - 190850796 ATTTTCCAGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8167852 10 - 15139346 ATTTTCCAGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6951550 10 - 7304997 ATTTGCCAGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9369590 10 - 11631747 ATTCTCCAGG i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47975230 10 + 63241923 ACACTCCAGG i canFam3.chr13 I 2 C 0 s dasNov3.JH568349 4089549 10 - 5279953 CTATTCCAGG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1864696 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1775782 18 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e otoGar3.GL873602 8602721 0 + 8790067 C a score=103363.000000 s hg38.chr4_KI270787v1_alt 48345 20 + 111943 CTC-TTTTTTTA---ATTTTAAAA s panTro5.chr4 119613384 20 - 194502333 CTC-TTTTTTTA---ATTTTAAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121026794 20 - 195804263 CTC-TTTTTTTA---ATTTTAAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458066 20 - 17550833 CTC-TTTTTTAC---ATTTTAAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69330815 20 - 118206036 CTC-TTTTTAAA---ATTTTAAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111534715 20 - 190429646 CTC-TTTTATTA---ATTTTAAAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110702854 20 - 189454096 CTC-TTTTATTA---TTTTTTAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13270916 20 + 26754465 CTC-TTTTATTA---TTTTTTAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4172186 20 - 5137665 CTC-TTTTATTA---TTTTTAAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887033 20 - 135778131 CTC-TTTTATTA---ATTTTAAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1988867 20 + 2427316 CTC-TTTTATTA---TTTTTAAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1282419 20 + 1448899 CTC-TTTTATTA---ATTTTAAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53004241 17 - 190850796 TTC-TTATT------TTTTTCTTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8167862 23 - 15139346 GTC-TTTTTAAAAAAGATTTAAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6951560 24 - 7304997 CTCGTTTTTTAAAAAAAATTAAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9369600 24 - 11631747 CTCCTTTTTTAAAAAAATGTAAAA i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47975240 20 + 63241923 CTA-TTATTTGA---ATTTTTAAA i canFam3.chr13 C 0 I 424 e proCoq1.NW_012140747v1 1864696 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1775782 18 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089559 0 - 5279953 C e otoGar3.GL873602 8602721 0 + 8790067 C a score=77115.000000 s hg38.chr4_KI270787v1_alt 48365 8 + 111943 CATTtttt s panTro5.chr4 119613404 8 - 194502333 CATTtttt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121026814 8 - 195804263 CATTtttt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458086 8 - 17550833 CATTtttt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69330835 8 - 118206036 CATTTTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111534735 8 - 190429646 CATTtttt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110702874 8 - 189454096 CATTtttt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13270936 8 + 26754465 CAtttttc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4172206 8 - 5137665 CATTtttt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887053 8 - 135778131 AATTtttt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1988887 8 + 2427316 CATTtttt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1282439 8 + 1448899 CATTtttt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53004258 8 - 190850796 Cttttttt i calJac3.chr3 C 0 I 4313 s saiBol1.JH378162 8167885 8 - 15139346 CATTtttt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6951584 8 - 7304997 CATGTttt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9369624 8 - 11631747 CATTtttt i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1864696 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1775782 18 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089559 0 - 5279953 C e otoGar3.GL873602 8602721 0 + 8790067 C e canFam3.chr13 47975260 424 + 63241923 I a score=327913.000000 s hg38.chr4_KI270787v1_alt 48373 38 + 111943 gaatgtttgtcagtacagagtaggtgtatatattt------aac s panTro5.chr4 119613412 38 - 194502333 gaatgtttgtcagtacagagtaggtgtatatattt------aac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121026822 38 - 195804263 gaatgtttgtcagtacagagtaggtgtatatattt------aac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458094 38 - 17550833 gaatgtttgtcagtacagagtaggtgtatatattt------aac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69330843 34 - 118206036 GAA----TGTCAGTACAGAGTAGGTGTATATATTT------AAC i nomLeu3.chr9 C 0 I 143 s rheMac8.chr5 111534743 44 - 190429646 gaatgtttgtcagtacagagtagacgtatatatttatggagaac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110702882 44 - 189454096 gaatgtttgtcagtacagagtaggcgtatatatttatggagaac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13270944 44 + 26754465 gaatgtttgtcagtacagagtaggcgtatatatttatggagaac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4172214 44 - 5137665 gaatgtttgtcagtacagagtaggtgtatatatttatggagaac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887061 44 - 135778131 gaatgtttgtcagtacagagtaggcgtatatatttatggagaac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1988895 44 + 2427316 gaatgtttgtcagtacagagtaggcgtatatatttatggagaac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1282447 44 + 1448899 gaatgtttgtcagtacagagtaggtgtatatatttatggagaac i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8167893 44 - 15139346 gaatgtttcttaatacagagtaggtggatatatttatgaggaac i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6951592 44 - 7304997 gaatgtttgtcaatacagagtaggtgtatacatttacagggaac i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9369632 44 - 11631747 gaatgtttgtcaatacagagtaggtgtatatatttagagggaac i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1864696 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1775782 18 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089559 0 - 5279953 C e calJac3.chr3 53004266 4313 - 190850796 I e otoGar3.GL873602 8602721 0 + 8790067 C e canFam3.chr13 47975260 424 + 63241923 I a score=4264225.000000 s hg38.chr4_KI270787v1_alt 48411 491 + 111943 atgagatattttgacacaggcatgcaatgcataataatcacatcagggtaatggggtgtccattatctcaagcatttgtcctttgtgttacaaacaatccaataatgctcctttaatta-tttttaaatgtccaattaaattatttttgactatactcaccctcttgtgctagcaaatactagatcttattcattctttgtaactactttttgtgcgcattaaatgtccccactta-----acctccatgtttccaagcttctggtaaccacgcttctattctctgtcttcatacgttcagttgtttgcatttttagaccccacaaataagtaagaacaagtgtagtttgtacttatgtgtctgacttatttcac-ttaacataatgacctccagctccatccatgttgttgcaaatgactggatctca--ttttttttatggctgaatagtactccattgtgtatatgtaccacattttctttatctattcatccgttg s panTro5.chr4 119613450 490 - 194502333 atgagatattttgacacaggcatgcaatgcataataatcacatcagggtaatggggtatccattatctcaagcatttgtcctttgtgttacaaacaatccaataatgctcctttaatta-tttttaaatgtacaattaaattatttttgactatactcaccctcttgtgctagcaaatactagatcttattcattctttgtaactactttttgtgcacattaaatgtccccactta-----acctacatgtttccaagcttctggtaaccacgcttctattctctgtcttcatacattcagttgtttgcatttttagaccccacaaataactaagaacaagtgtagtttgtacttctgtgtctgacttatttcat-ttaacataatgacctccagctccatccatgttgttgcaaatgactggatctca---tttttttatggctgaatagtactccattgtgtatatgtaccacattttctttatctattcatctgttg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121026860 490 - 195804263 atgagatattttgacacaggcatgcaatgcataataatcacatcagggtaatggggtatccattatctcaagcatttgtcctttgtgttacaaacaatccaataatgctcctttaatta-tttttaaatgtacaattaaattatttttgactatactcaccctcttgtgctagcaaatactagatcttattcattctttgtaactactttttgtgcacattaaatgtccccactta-----acctacatgtttccaagcttctggtaaccacgcttctattctctgtcttcatacattcagttgtttgcatttttagaccccacaaataagtaagaacaagtgtagtttgtacttctgtgtctgacttatttcat-ttaacataatgacctccagctccatccatgttgttgcaaatgactggatctca---tttttttatggctgaatagtactccattgtgtatatgtaccacattttctttatctattcatctgttg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458132 492 - 17550833 atgagatattttgacacaggcatgcaatgcataataatcacatcagggtaatggggtatccattatctcaagcatttgtcctttgtgttacaaacaatccaataatgctcctttaatta-tttttaaacgtacaattaaattatttttgactatagtcaccctcttgtgctagcaaatactagatcttattcattctttgtaactactttttgtgcacattaaatgtccccactta-----acctccatgtttccaagcttctggtaaccacgcttctcttctctatcttcatatgttcagttgtttggatttttagaccccacaaataagtaagaacaagtgaagtttgtacttctgtgtctgacttatttcac-ttaacataatgacctccagctccatccatgttgttgcaaatgactggatctca-ttcttttttatggctgaatagtactccattgtgtatatgtaccacattttctttatctattcatctgttg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69331020 493 - 118206036 atgagatattttgacacaggcatgcaatgcataataatcacatcagggtaatggggtatccattatctcaagcatttgtcttttgtgttacaaacaatccaataatgctcctttaatta-tttttaaatgtacaattaagttatttttgactatagtcaccctcttgtgctagcaaatactggatcttatccattctttgcaactactttttgtacacattaactgtccccactta-----acctccatgtttccaagcttctggtaaccacgcttctattctctatcttcatacgttcaattgtttggatttttagaccccacaaataagtaagaacaagtgaagtttgtacttctgtatctgacttatttcac-ttaacataatgacctccagctccatccacattgttgcaaatgactggatctcattctttttttatggctgaatagtactccattgtgcatatgtaccacattttctttatctattcatctgttg i nomLeu3.chr9 I 143 C 0 s rheMac8.chr5 111534787 497 - 190429646 atgagatattttgacacaggcatgcaatgcataataatcacatcagggtaatggggtatccattatctcaagcatttgtcccttgtgttacaaacaatccaacaatgctcctttaatta-tttttaaatgtacaattaaattatttttaactatactcacccttttgtgctagcaaatactagatcttattcgttctttgtaactattttttgtacatattaactgtccccacttccccctacccccatctttccaagcttctggtaaccacgcttctattctctatcttcgtaagttcaattgtttggatttttagaccccacaaataagtaagagcatgtgaagtttgtacttctgtgtctgacttatttcat-ttaacataatgacctccagctccatccatgttgttgcaaatgactggatctcatt-cttttttatggctgaatagtactccattgtgtatgtgtaccacattttctttatccattcatctgttg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110702926 497 - 189454096 atgagatattttgacacaggcatgcaatgcataataatcacatcagggtaatggggtatccattatctcaagcatttgtcccttgtgttacaaacaatccaacaatgctcctttaatta-tttttaaatgtacaattaaattatttttaactatactcacccttttgtgctagcaaatactagatcttattcgttctttgtaactattttttgtacatattaactgtccccacttccccctacccccacctttccaagcttctggtaaccacgcttctattctctatcttcgtaagttcaattgtttggatttttagaccccacaaataagtaagagcatgtgaagtttgtacttctgtgtctgacttacttcat-ttaacataatgacctccacctccatccatgttgttgcaaatgactggatctcatt-cttttttatggctgaatagtactccattgtgtatgtgtaccacattttctttatccattcatctgttg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13270988 476 + 26754465 atgagatattttgacacaggcatgcaatgcataataatcacatcagggtaatggggtatccattatctcaagcatttgtcccttgtgttacaaacaatccaacaatgctcctttaatta-tttttaaatgtacaattaaattatttttaactatactcacccttttgtgctagcaaatactagatcttattcgtcctttgtaactattttttgtacatattaactgtccccacttccccctacccccacctttccaagcttctggtaaccacgcttctattctctatcttcgtaagttcaattgtttggatttttagaccccacaaataagtaagagcatgtgaagtttgtacttctgtgtctgacttacttcat-ttaacataatgacctccagctccatccatgttgttgcaaatgactggatctcatt----------------------ctccattgtgtatgtgtaccacattttctttatccattcatctgttg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4172258 498 - 5137665 atgagatattttgacacaggcatgcaatgcataataatcacatcagagtaatggggtatccattatctcaagcatttgtcccttgtgttacaaacaatccaacaatgctcctttaatta-tttttaaatgtacaattaaattatttttaactatactcacccttttgtgctagcaaatactagatcttattcgttctttgtaactattttttgtacatattaactgtccccacttccccctacccccatctttccaagcttctggtaaccacgcttctattctctatcttcgtaagttcaattgtttggatttttagaccccacaaataagtaagagcatgtgaagtttgtacttctgtgtctgacttatttcat-ttaacctaatgacctccagctccatccatgttgttgcaaatgactggatctcattatttttttatggctgaatagtatcccattgtgtatgtgtaccacattttctttatccattcatctgttg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887105 498 - 135778131 atgagatattttgacacaggcatgcaatgcataataatcacatcagggtaatggggtatccattatctcaagcatttgtcccttgtgttacaaacaatccaacaatgctcctttaatta-tttttaaatgtacaattaaattatttttaactatactcacccttttgtgctagcaaatactagatcttattccttctttgtaactattttttgtacatattaactgtccccacttccccgtacccccatctttccaagcttctggtaaccacacttctattctctatcttcgtaagttcaattgtttggatttttagaccccacagataagtaagagcatgtgaagtttgtacttctgtgtctgacttacttcat-ttaacataatgacctccagctccatccatgttgttgcaaatgactggatctcattctttttttatggctgaatagtactccattgtgtatgtgtaccacattttctttatccattcatctgttg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1988939 498 + 2427316 atgagatattttgacacaggcatgcaatgcataataatcacatcagggtaatggggtatccattatctcaagcatttgtcccttgtgttacaaacaatccaacaatgctcctttaatta-tttttaaatgtacaattaaattatttttaactatactcacccttttgtgctagcaaatactagatcttattcgttctttgtaactattttttgtacatattaactgtccccacttccccctacccccatctttccaagcttctggtaaccacgcttctgttctctatcttcgtaagttcaattgtttggatttttagaccccacaaataagtaagagcatgtgaagtttgtacttctgtgtctgacttatttcat-ttaacataatgacctccagctccatccatgttgttgcaaatgactggatctcattctttttttatggctgaatagtattccattgtgtatgtgtaccacattttctttatccattcatctgttg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1282491 499 + 1448899 atgagatattttgacacaggcatgcaatgtgtaataatcacatcagggtaatggggtatccattatctcaagcatttgtcccttgtgttacaaacaatccaataatgctcctttaattattttttaaatatacaattaaattatttttaactatactcacccttttgtgctagcaaatactagatcttattcattctttgtaactattttttgtacatattaactgtccccacttccccctacccccatctttccaagcttctggtaaccacgcttctattctctatcttcgtaagttcaattgcttggatctttagaccccacaaataagtaagaacatgtgaagtttgtacttctgtgtctgacttatttcac-ttaacataatgacctccagctccatccatgttgttgcaaatgactggatctcattctttttttatggctgaatagtactccattgtgtatgtgtaccacatttgctttatccattcatctgttg i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8167937 490 - 15139346 atgagatattttgatacaggtatgcaatgtgtaataatcacatcagggtaatggggtatccatcatctcaagcatttgtcctttgtatt----acagtccaataatgctccttcagtta-tttttaaatgtacaattaaattatttttgactatagccaccctcttgtgctagcaaatactagatcttattcattcttttgaactactttttgtacacattagctgtccccacttctccc-acctccatctttccaagcttctggtaaccatgcttcta--ctctatctttacagggtcagttgtttggatttttagaccccacaaataagtaagaacctgtgaagtttgtatgtctgtgtctgacttatttcac-taaacataataacctccagttccatccacgttgttgcaaatgactggatctcatt-cttttttatggctgaacagtactccattgtgtatatttaccacattttctttatccattcatctgttg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6951636 494 - 7304997 atgagatgttttgatacaggcatgcaatgtgtaataatcacatcagggtaatgaggtatccaccatctcaagcatttaagctttgtgttataaacagtccaataatgctcctttagtta-tttttaaatgtacaattaaattatttttgactatagccaccctcttgtgctagcaaatagtagatcttattcattcttttgaactactttttgtatacattaactgtccccacttctccc-acctccatctttccaagcttctggtaaccatgcttcta--ctctatctttacaaggtcagttgtttggatttttagaccccacaaataagtaagaacctgtgaagtttgtatgtctgtgtctgacttatttcac-ttaacataataacctccagttccatccacgttgttgcaaatgactagatctcatt-catttttatggctgaacaatactccattgtggatatgtaccacattttctttatccattcatctgttg i cebCap1.NW_016107439v1 C 0 I 564 s aotNan1.NW_018493494v1 9369676 495 - 11631747 atgagatattttgatacaggtatgcaatgtgtaataatcacatcagggtaatggagtatccatcatctcaagcatttaacctttgtgttatacacagtccaataatgcccctttagtta-tttttaaatgtacaattaaattattttttactatagccaccctcttgtgctagcaaatactagatcttattcattctttcgaactactttttgtacacattaactgtccccacttctccc-acctccatctttccaagcttctggtaaccatgcttcta--ctctatcttcacaaggtcagttgtttggatttttagaccccacaaataagtaaaaacctgtgaagtttgtatgtctgtgtctgacttatttcacattaacataataacctccagttccatccatgttgttgcaaatgactggatctcatt-cttttttatggctgaacagtactccattgtgtatatgtaccacattttctttatccattcatctgttg i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1864696 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1775782 18 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089559 0 - 5279953 C e calJac3.chr3 53004266 4313 - 190850796 I e otoGar3.GL873602 8602721 0 + 8790067 C e canFam3.chr13 47975260 424 + 63241923 I a score=469788.000000 s hg38.chr4_KI270787v1_alt 48902 59 + 111943 gtggaaatttaggttgcttccacatcttagctattgtgaatagtgctgcagtaaacatg s panTro5.chr4 119613940 59 - 194502333 gtggaaatttaggttgcttccacatcttagctattgtgaatagtgctgcagtaaacatg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121027350 59 - 195804263 gtggaaatttaggttgcttccacatcttagctattgtgaatagtgctgcagtaaacatg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458624 59 - 17550833 gtggaaatttaggttgcttccacatcttagctattgtgaatagtgctgctgtaaacatg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69331513 59 - 118206036 gtggaaatttaggttgcttccacatcttagctattgtgaatagtgctgcagtaaacatg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111535284 59 - 190429646 gtggaaatttaggttgcttccacatcttagctattgtgaatagtgctgcagtaaacatg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110703423 59 - 189454096 gtggaaatttaggttgcttccacatcttagctattgtgaatagtgctgcagtaaacatg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13271464 59 + 26754465 gtggaaatttaggttgcttccacatcttagctattgtgaatagtgctgcagtaaacatg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4172756 59 - 5137665 gtggaaatttaggttgcttccacatcttagctattgtgaatagtgctgcagtaaacatg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887603 59 - 135778131 gtggaaatttaggttgcttccacatcttagctattgtgaatagtgctgcagtaaacatg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1989437 59 + 2427316 gtggaaatttaggttgcttccacatcttagctattgtgaatagtgctgcagtaaacatg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1282990 59 + 1448899 gtggaaatttaggttgcttccacatcttagctattgtgaatagtgctgcagtaaacatg i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8168427 59 - 15139346 ggaaaaatttaggttgtttccaaatcttagctattgctaatattgctgcaataaacatg i saiBol1.JH378162 C 0 I 510 s aotNan1.NW_018493494v1 9370171 59 - 11631747 gggaaaatttaggttgtttccaaatcttagctattgcgaatattgctgcaatatacatg i aotNan1.NW_018493494v1 C 0 I 503 e proCoq1.NW_012140747v1 1864696 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1775782 18 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089559 0 - 5279953 C e cebCap1.NW_016107439v1 6952130 564 - 7304997 I e calJac3.chr3 53004266 4313 - 190850796 I e otoGar3.GL873602 8602721 0 + 8790067 C e canFam3.chr13 47975260 424 + 63241923 I a score=7800.000000 s hg38.chr4_KI270787v1_alt 48961 1 + 111943 g s panTro5.chr4 119613999 1 - 194502333 g i panTro5.chr4 C 0 C 0 s panPan2.chr4 121027409 1 - 195804263 g i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458683 1 - 17550833 g i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69331572 1 - 118206036 g i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111535343 1 - 190429646 g i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110703482 1 - 189454096 g i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13271523 1 + 26754465 g i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4172815 1 - 5137665 g i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887662 1 - 135778131 g i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1989496 1 + 2427316 g i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283049 1 + 1448899 g i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9370733 1 - 11631747 g i aotNan1.NW_018493494v1 I 503 C 0 e proCoq1.NW_012140747v1 1864696 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1775782 18 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089559 0 - 5279953 C e cebCap1.NW_016107439v1 6952130 564 - 7304997 I e saiBol1.JH378162 8168486 510 - 15139346 I e calJac3.chr3 53004266 4313 - 190850796 I e otoGar3.GL873602 8602721 0 + 8790067 C e canFam3.chr13 47975260 424 + 63241923 I a score=94938.000000 s hg38.chr4_KI270787v1_alt 48962 12 + 111943 gagtgcagctat s panTro5.chr4 119614000 12 - 194502333 gagtgcagatat i panTro5.chr4 C 0 C 0 s panPan2.chr4 121027410 12 - 195804263 gagtgcagatat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458684 12 - 17550833 gagtgcagatat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69331573 12 - 118206036 gagtgcagatat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111535344 12 - 190429646 gagtgcagatat i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110703483 12 - 189454096 gagtgcagatat i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13271524 12 + 26754465 gagtgcagatat i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4172816 12 - 5137665 gggtgcagatat i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887663 12 - 135778131 gagtgcagatat i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1989497 12 + 2427316 gggtgcagatat i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283050 12 + 1448899 gagtgcagatat i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53008579 11 - 190850796 gagtgcag-tat i calJac3.chr3 I 4313 C 0 s saiBol1.JH378162 8168996 11 - 15139346 gagtgcag-tat i saiBol1.JH378162 I 510 C 0 s aotNan1.NW_018493494v1 9370734 11 - 11631747 gagtgcag-tat i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1864696 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1775782 18 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089559 0 - 5279953 C e cebCap1.NW_016107439v1 6952130 564 - 7304997 I e otoGar3.GL873602 8602721 0 + 8790067 C e canFam3.chr13 47975260 424 + 63241923 I a score=1889861.000000 s hg38.chr4_KI270787v1_alt 48974 188 + 111943 ctcttcaatatacagatttcctttctttggggt-----cctagcagtgggattgctggattatattgtagctctat-ttttagttttctgaggaagctccaaactgttctccatagtggttgtactaatttacttttccagtagcagtgtacaaggattcccatttctccacatccttgccagcatttattatt s panTro5.chr4 119614012 188 - 194502333 ctcttcaatatacaaatttcctttctttggggt-----cctagcagtgggattgctggatcatattgtagctctat-ttttagttttctgaggaagctccaaactgttctccatagtggttgtactaatttacttttccagtaacagtgtacaaggattcccatttctccacatccttgccagcatttattatt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121027422 188 - 195804263 ctcttcaatatacaaatttcctttctttggggt-----cctagcagtgggattgctggatcatattgtagctctat-ttttagttttctgaggaagctccaaactgttctccatagtggttgtactaatttacttttccagtaacagtgtacaaggattcccatttctccacatccttgccagcatttattatt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458696 188 - 17550833 ctcttcaatatacagattttctttctttggggt-----ccgagcagtgagattgctggatcatattgtagctctat-ttttagttttctgaggaagctccaaactgttctccatagtggttgtactaatttacttttccagtaacagtgtacagggattcccatttctccacatccttgccagcatttgttatt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69331585 188 - 118206036 ctcttcaatatacagatttcctttctttggggt-----cctagcagtgggattgctggatcatatggtagctctat-ttttagttttctgaggaagctccaaactgttctccatagtggttgtgctaatttacttttccagtaacagtgtacaaggattcccatttctccacatccttgccagcatttgttatt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111535356 188 - 190429646 ctcttcaatatacagatttcctttctttggggt-----cctagcagcgggattgctggactatatggtagctctat-ttttagttttctgaggaagctccaaactgttctccatagtggttgtactaatttacttttccagcaacagtgtacaaggattcccatttctccacatcctcaccagcatttgttatt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110703495 188 - 189454096 ctcttcaatatacagatttcctttctttggggt-----cctagcagcgggattgctggactatatggtagctctat-ttttagttttctgaggaagctccaaactgttctccatagtggttgtactaatttacttttccagcaacagtgtacaaggattcccatttctccacatcctcaccagcatttgttatt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13271536 188 + 26754465 ctcttcaatatacagatttcctttctttggggt-----cctagcagtgggattgctggactatatggtagctctat-ttttagttttctgaggaagctccaaactgttctccatagtggttgtactaatttacttttccagcaacagtgtacaaggattcccatttctccacatcctcaccagcatttgttatt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4172828 188 - 5137665 ctcttcaatatacagatttcctttctttggggt-----cctagcagcgggattgctggactatatggtagctctat-ttttagttttctgaggaagctccaaactgttctccatagtggttgtactaatttacttttccagcaacagtgtacaaggattcccatttctccacatcttcaccagcatttgttatt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887675 188 - 135778131 ctcttcaatatacagatttcctttctttggggt-----cctagcagtgggattgctggactatatggtagctctat-ttttagttttctgaggaagctccaaactgttctccatagtggttgtactaatttacttttccagcaacagagtacaaggattcccatttctccacatcctcaccagcatttgttatt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1989509 188 + 2427316 ctcttcaatatacagatttcctttctttggggt-----cctagcagcgggattgctggactatatggtagctctat-ttttagttttctgaggaagctccaaactgttctccatagtggttgtactaatttacttttccagcaacagtgtacaaggattcccatttctccacatcctcaccagcatttgttatt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283062 187 + 1448899 ctcttcaatatacagatttcctttctttggggt-----cctagcagtgggattgctggatcatatggtagctcta--ttttagttttctgaggaagctccaaactgttatccatagtggttgtactaatttacttttccagcaacagtgtacaaggattcccatttctccacatcctcaccagcatttgttatt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53008590 193 - 190850796 ctcttcagtataca-aatttcttgctttggggtgtatactgagcagtgggattcctggaccatatggtagctctactttttagttttctgaggaagctccaaactgttctccatagtagttgtactaacttagttttccagcaacagtgtacaatggctcctgtttctccacatcctcaccagcatttgttgtt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8169007 190 - 15139346 ctcttcaatatacatacttcctttctttggggtgtatacctagcagtgggattcctggatcatatggtagctc----ttttagttttctgaggaagctccaaactgttctccatagtggttgtactaatttagttttccagcaacagtgtacaatggttcccatttctccacgtcatcactagcatttgttatt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6952694 194 - 7304997 ctcttcaatatacatacttcctttctctggggtgtatacctagcagtcggattcctggatcatatggtagctctattttttagttttctgaggaagctccaaactgttctccatagtggttgtactaatttagttttccagcaacagtgtacaatggttcccatttctccacatcctcactagtatttgttatt i cebCap1.NW_016107439v1 I 564 C 0 s aotNan1.NW_018493494v1 9370745 194 - 11631747 ctcttcaatatacatacttcctttctttggggtgtatacctagcagtgggattcctggatcatatggtagctctattttttagttttctgaggaagctccaaactgttctccatagtggttgtactaatttagttttccagcaacagtgtacaatggttcccacttctccacatcctcaccagcatttgtgatt i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1864696 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1775782 18 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089559 0 - 5279953 C e otoGar3.GL873602 8602721 0 + 8790067 C e canFam3.chr13 47975260 424 + 63241923 I a score=69227.000000 s hg38.chr4_KI270787v1_alt 49162 7 + 111943 gtcCAGC s panTro5.chr4 119614200 7 - 194502333 gtcCAGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121027610 7 - 195804263 gtcCAGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458884 7 - 17550833 gtcCAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69331773 7 - 118206036 gtcCAGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111535544 7 - 190429646 gtccgGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110703683 7 - 189454096 gtccgGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13271724 7 + 26754465 gtccgGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4173016 7 - 5137665 gtcCAGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887863 7 - 135778131 gtcCAGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1989697 7 + 2427316 gtcCAGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283249 7 + 1448899 gtcCAGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53008783 7 - 190850796 gtcCAGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8169197 7 - 15139346 atccagg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6952888 7 - 7304997 gtccagg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9370939 7 - 11631747 gtccagg i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8602721 7 + 8790067 CTCAAGG i otoGar3.GL873602 C 0 C 0 e proCoq1.NW_012140747v1 1864696 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1775782 18 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089559 0 - 5279953 C e canFam3.chr13 47975260 424 + 63241923 I a score=66247.000000 s hg38.chr4_KI270787v1_alt 49169 5 + 111943 CTATC s panTro5.chr4 119614207 5 - 194502333 CTATC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121027617 5 - 195804263 CTATC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458891 5 - 17550833 CTATC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69331780 5 - 118206036 CTATC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111535551 5 - 190429646 CTATC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110703690 5 - 189454096 CTATC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13271731 5 + 26754465 CTATC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4173023 5 - 5137665 CTATC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887870 5 - 135778131 CTATC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1989704 5 + 2427316 CTATC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283256 5 + 1448899 CTATC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53008790 5 - 190850796 CTACC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8169204 5 - 15139346 ctatc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6952895 5 - 7304997 ctacc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9370946 5 - 11631747 ctatc i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8602728 5 + 8790067 CTATC i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4089559 5 - 5279953 TTATC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1864696 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1775782 18 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e canFam3.chr13 47975260 424 + 63241923 I a score=11709.000000 s hg38.chr4_KI270787v1_alt 49174 1 + 111943 A s panTro5.chr4 119614212 1 - 194502333 A i panTro5.chr4 C 0 C 0 s panPan2.chr4 121027622 1 - 195804263 A i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458896 1 - 17550833 A i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69331785 1 - 118206036 A i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111535556 1 - 190429646 A i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110703695 1 - 189454096 A i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13271736 1 + 26754465 A i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4173028 1 - 5137665 A i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887875 1 - 135778131 A i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1989709 1 + 2427316 A i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283261 1 + 1448899 A i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53008795 1 - 190850796 A i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8169209 1 - 15139346 a i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6952900 1 - 7304997 t i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9370951 1 - 11631747 a i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1864713 1 + 4188776 A i proCoq1.NW_012140747v1 I 17 C 0 s otoGar3.GL873602 8602733 1 + 8790067 A i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4089564 1 - 5279953 A i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1775782 18 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e canFam3.chr13 47975260 424 + 63241923 I a score=604588.000000 s hg38.chr4_KI270787v1_alt 49175 43 + 111943 TTTTAGTTCTTT-AAAAGTGGCTGTAATTTCTCTTGTTCATTTC s panTro5.chr4 119614213 43 - 194502333 TTTTAGTTCTTT-AAAAGTGGCTGTAATTTCTCTTGTTCATTTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121027623 43 - 195804263 TTTTAGTTCTTT-AAAAGTGGCTGTAATTTCTCTTGTTCATTTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458897 43 - 17550833 TTTTAGTTCTTT-AAAAGTGGCTGTAATTTCTCTTGTTCATTTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69331786 43 - 118206036 TTTTAGTTCTTT-AAAAGTGGCTGTAATTTCTCTTGTTCATTTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111535557 43 - 190429646 TTTTTGTTCTTT-AAAAGTGGCTGTAATTTCTCTTGTTCATTTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110703696 43 - 189454096 TTTTTGTTCTTT-AAAAGTGGCTGTAATTTCTCTTGTTCATTTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13271737 43 + 26754465 TTTTCGTTCTTT-AAAAGTGGCTGTAATTTCTCTTGTTCATTTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4173029 43 - 5137665 TTTTCGTTCTTT-AAAAGTGGCTGTAATTTCTCTTGTTCATTTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887876 43 - 135778131 TTTTCCTTCTTT-AAACGTGGCTGTAATTTCTCTTGTTCATTTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1989710 43 + 2427316 TTTTCGTTCTTT-AAAAGTGGCTGTAATTTCTCTTGTTCATTTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283262 43 + 1448899 TTTTCGTTCTTT-AAAAGTGGCTGTAATTTCTCTTGTTCATTTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53008796 43 - 190850796 TTTCAGTTCTTT-AAAAGTGGCTGTAATTTCTCTTGTTCATTCC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8169210 43 - 15139346 ttttagttcttt-aaaagtggctgtaaTTTATCTTGTTCATTCC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6952901 43 - 7304997 ttttagttcttT-AAAAGTGGCTGTAATTTCTCTTGTTCATTCC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9370952 43 - 11631747 ttttagtgcttt-aaaagtgggtgtAATTTCTCTTGTTCATTCC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1775800 43 + 3286835 TTTTAATTCTTT-TAAAGAGGCTATAATTTCTATTGTTCATTCT i micMur3.chrUn_NW_017968520v1 I 18 C 0 s proCoq1.NW_012140747v1 1864714 43 + 4188776 TTTTAATTCTTT-TAAAGTGACTATAATCTCTATTGTTCATTCT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8602734 43 + 8790067 TTTTAATTCTTT-GAAAGTGGCTGTAATTTTTATTGTTCATTCT i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4089565 44 - 5279953 TTAGACTTCTTTAAAAAGTAGCTGTCATTTCTACTATTCCTTCT i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76407579 1026 + 151834684 I e canFam3.chr13 47975260 424 + 63241923 I a score=1170342.000000 s hg38.chr4_KI270787v1_alt 49218 75 + 111943 ----ATGATCAAAGTCAAAATGCATTACTTCCTAATCTATCAATCCGTACTCTTGGTCCAACAGAACCCACTAATCA-TT s panTro5.chr4 119614256 75 - 194502333 ----ATGATCAAAGTCAAAATGCATTACTTCCTAATCTATCAATCCGTACTCTTGGTCCAACAGAACCCACTAATCA-TT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121027666 75 - 195804263 ----ATGATCAAAGTCAAAATGCATTACTTCCTAATCTATCAATCCGTACTCTTGGTCCAACAGAACCCACTAATCA-TT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4458940 75 - 17550833 ----ATGATCAAAGTCAAAATGCATTACTTCCTAATCTATCAATCCCTACTCTTGGTCCAACAGAACCCACTAATCA-TT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69331829 75 - 118206036 ----ATGATCAAAGTCAAAATGCATTACTTCCTAATCTATCAATCCCTACTCTTAGTCCAACAGAACCCACTAATCA-TT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111535600 75 - 190429646 ----ATGATCAAAGTCAAAATGCATTACTTCCTAATCTATCAATCCCTACTCTTGGTCAAACGGCACCCACTGATCA-TT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110703739 75 - 189454096 ----ATGATCAAAGTCAAAATGCATTACTTCCTAATCTATCAATCCCTACTCTTGGTCAAACAGCACCCACTGATCA-TT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13271780 75 + 26754465 ----ATGATCAAAGTCAAAATGCATTACTTCTTAATCTATCAATCCCTACTCTTGGTCAAACAGCACCCACTGATCA-TT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4173072 75 - 5137665 ----ATGATCAAAGTAAAAATGCATTACTTCCTAATCTATCAATCCCTACTCTTGGTCAAACAGCACCCACTGATCA-TT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887919 75 - 135778131 ----ATGATCAAAGTCAAAATGAATTACTTCCTAATCTATCAATCCCTACTCTTGGTCAAACAGCACCCACTGATCA-TT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1989753 75 + 2427316 ----ATGATCAAAGTCAAAATGCATTACTTCCTAATCTATCAATCCCTACTCTTGGTCAAACAGCACCCACTGATCA-TT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283305 75 + 1448899 ----ATGATCAAAGTCAAAATGCATTACTTCCTAATCTATCAATCCCTACTCTTGGTCAAACAGAACCCACGAATCA-TT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53008839 75 - 190850796 ----ATGATCAAAGTCAAAATGCACTACTTCCTAGTCTATTAATCCCTACTCTTGGTTCAACAGAACCCACTAATAA-TT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8169253 75 - 15139346 ----ATGATCAAAGTCAAAATGCATTACTTCCTAGTCTATTAATCCCTACTCTTGGTCCAACAGAACCAACTAATCA-TT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6952944 75 - 7304997 ----ATGATCAAAGTCAAAATGCATTACCTCCTAGTCTATTAATCCCCACTCTTGGTCCAACAGAACCCACTAATCA-TT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9370995 75 - 11631747 ----ATGATCAAAGTCAAAATGCATTACTTCCTAGTCTATTAATCCCTACTCTTGGTCCAACAGAACCAACTAATCA-TT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1775843 75 + 3286835 ----ACGATCAAAGTCAAAATACATCACTTTCCAATCTATCAATCCCTACTCTTGGCCCAACAGAACACATGAATCA-TT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1864757 75 + 4188776 ----ATGATCAAAGTCAAAATGCATCACTTTCCAATCTATCAATCCCTACTCTTGGCCCAACAGAACACATTAATCA-TT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8602777 76 + 8790067 ----ATGATCAATGTTGAAATGCATTGCTCCACGATCTATCAATCCCTACTCTAAGCCGGAGAGAACACACTGATCATTT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47975684 75 + 63241923 ----ATGATCAAAGTCAAATTGTATTACTTCCCAGTCTAACAGTTCCCTCTCTTGTTCCAATAGAACTTACAAATCA-TC i canFam3.chr13 I 424 C 0 s dasNov3.JH568349 4089609 79 - 5279953 ACTATTATTCAACCTCAAAATGCAGTACTTCCCAATCTGTCAATCCCAATGCTTGACCCAGCAGAGCCTACTAATTA-TT i dasNov3.JH568349 C 0 I 1053 e mm10.chr5 76407579 1026 + 151834684 I a score=474777.000000 s hg38.chr4_KI270787v1_alt 49293 33 + 111943 CCCTTCCATCTCACATGCACCTCCACCTGCCTG s panTro5.chr4 119614331 33 - 194502333 CCCTTCCATCTCACATGCACCTCCACCTGCCTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121027741 33 - 195804263 CCCTTCCATCTCACATGCACCTCCACCTGCCTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459015 33 - 17550833 CCCTTCCATCTTACATGCACCTCCACCTGCCTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69331904 33 - 118206036 CCCTTCCATCTCACATGCACCTCCACCTGCCTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111535675 33 - 190429646 CCCTTCCATCTCACATGCACCTCCACCTGCCTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110703814 33 - 189454096 CCCTTCCATCTCACATGCACCTCCACCTGCCTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13271855 33 + 26754465 CCCTTCCATCTCACATGCACCTCCACCGGCCTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4173147 33 - 5137665 CCCTTCCATCTCACATGCACCTCCACCGGCCTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122887994 33 - 135778131 CCCTTCCATCTCACATGCACCTCCACCTGCCTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1989828 33 + 2427316 CCCTTCCATCTCACATGCACCTCCACCGGCCTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283380 33 + 1448899 CCCTTCCATCTCACATGCACCTCCACCTGCCTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53008914 33 - 190850796 CCCTTACATCTCACATGCACCTCTACCTGCCTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8169328 33 - 15139346 CCCTTACATCTCACATGCACCTCCACCTGCCTG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6953019 33 - 7304997 CCCTTACATCTCACATGCACCTCTACCTGCCTG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9371070 33 - 11631747 CCCTTACATCTCACATGCACCTCCACCTGCCTG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1775918 33 + 3286835 TCCTGATGTCTCACACCCACCACCACCTGCCTG i micMur3.chrUn_NW_017968520v1 C 0 I 112 s proCoq1.NW_012140747v1 1864832 33 + 4188776 TCCTTACGTCTCACACCCACCTCCACCTGCCTG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8602853 33 + 8790067 TCCTTACGTCTCACACCCACCTCCACCTGCCTG i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47975759 32 + 63241923 TTCATACATCACATGCTTACCTCCACCAAATG- i canFam3.chr13 C 0 C 0 e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I a score=406586.000000 s hg38.chr4_KI270787v1_alt 49326 25 + 111943 CTCTAGCCTCACCTGAGAGTAATGA s panTro5.chr4 119614364 25 - 194502333 CTCTAGCCTCACCTGAGAGTAATGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121027774 25 - 195804263 CTCTAGCCTCACCTGAGAGTAATGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459048 25 - 17550833 CTCTAGCCTCACCTGAGAGTAATGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69331937 25 - 118206036 CTCTAGCCTCACCTGAGAGTAATGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111535708 25 - 190429646 CTCTAGCCTCACCTGAGAGTAATGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110703847 25 - 189454096 CTCTAGCCTCACCTGAGAGTAATGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13271888 25 + 26754465 CTCTAGCCTCACCTGAGAGTAATGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4173180 25 - 5137665 CTCTAGCCTCACCTGAGAGTAATGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122888027 25 - 135778131 CTCCAGCCTCACCTGAGAGTAATGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1989861 25 + 2427316 CTGTAGCCTCACCTGAGAGTAATGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283413 25 + 1448899 CTCTAGCCTCACCTGAGAGTAATGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53008947 25 - 190850796 CTCTAGCCTCACCTGAGAGTAATGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8169361 25 - 15139346 CTCTAGCCTCACCTGAGAGTAATGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6953052 25 - 7304997 CTCTAGCCTCACCTGCGAGTAATGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9371103 25 - 11631747 CTCTAGCCTCACCTGAGAGTAATGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1776063 25 + 3286835 CTCTAGCCTCTCCTGAGAGTAATGA i micMur3.chrUn_NW_017968520v1 I 112 C 0 s proCoq1.NW_012140747v1 1864865 25 + 4188776 CTCTAGCCTCACCTGAGAGTAATGA i proCoq1.NW_012140747v1 C 0 I 191 s otoGar3.GL873602 8602886 25 + 8790067 CTCGAGGCTCATCTGAGGGGAATGG i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47975791 25 + 63241923 CTCAAACCTCACCTGAAAGTAATGT i canFam3.chr13 C 0 C 0 e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I a score=908713.000000 s hg38.chr4_KI270787v1_alt 49351 78 + 111943 ACATGGCCAGGGCATCCTCCAAGACCGCGGGAGACTAAGGCTGCATTATGGGAC-GG-TCTCCTGGGCTTCCTAGCACAA- s panTro5.chr4 119614389 78 - 194502333 ACATGGCCAGGGCATCCTCCAAGACCGCGGGAGACTAAGGCTGCATTATGGGAC-GG-TCTCCTGGGCTTCCTAGCACAG- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121027799 78 - 195804263 ACATGGCCAGGGCATCCTCCAAGACCGCGGGAGACTAAGGCTGCATTATGGGAC-GG-TCTCCTGGGCTTCCTAGCACAG- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459073 78 - 17550833 ACATCGCCACGGCATCCTCCAAGACCGCGGGAGACTAAGGCTGTATTATGGGAC-GG-TCTCCTGGGCTTCCTAGCAGAA- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69331962 78 - 118206036 ACATCGCCAGGGCATCCTCCAAGACCGCGGGAGACTAAGGCTGTATTATGGGAC-AG-TCTCCTGGGCTTCCTAGCACAA- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111535733 78 - 190429646 ACATCACCAGGGCATCCTCCAAGACTGCAGGAGACTAAGGCTGCATTATGGGTT-GG-TCTCCTGGGCTTCCTAGCACAA- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110703872 78 - 189454096 ACATCACCAGGGCATCCTCCAAGACTGCAGGAGACTAAGGCTGCATTATGGGTT-GG-TCTCCTGGGCTTCCTAGCACAA- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13271913 78 + 26754465 ACATCACCAGGGCATCCTCCAAGACTGCAGGAGACTAAGGCTGCATTATGGGTT-GG-TCTCCTGGGCTTCCTAGCACAA- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4173205 78 - 5137665 ACATCACCAGGGCATCCTCCAAGACTGCAGGAGACTAAGGCTGCATTATGGGTT-GG-TCTCCTGGGCTTCCTAGCACAA- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122888052 78 - 135778131 ACATCACCACGGCATCCTCCAAGACTGCAGGAGACTAAGGCTGCATTATGGGTT-GG-TCTCCTGGGCTTCCTAGCACAA- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1989886 78 + 2427316 ACATCACCAGGGCATCCTCCAAGACTGCAGGAGACTAAGGCTGCATTATGGGTT-GG-TCTCCTGGGCTTCCTAGCACAA- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283438 78 + 1448899 ACATCACCAGGGCATCCTCCAAGACTGCAGGAGACTAAGGCTGCATTATGGGTC-GG-TCTCCTGGGCTTCCGAGCACAA- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53008972 71 - 190850796 ACATCGCCAGGGCATCCTCCAAGACCACAGGAGACTACGGCTCTATCATGGGAC-AG-TCTCCTGGGC-------CACAA- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8169386 78 - 15139346 ACATCGTGAGGGCATCCTCCAAGACCACAGGAGACTAAGGCTCTATCATGGGAC-AG-TCTCCTGGGCTTCATAGCACAA- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6953077 78 - 7304997 ACATCGCCAGGGCATCCTCCAAGACCACAGGAGACTAAGGCTCTATCATGAGAC-AG-TCTCCTGGGCTTCATAGCACAA- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9371128 78 - 11631747 ACATTGCCAGGGCATCCTCCAAGACCACAGGAGACTAAGGCTCTATCATGGGAC-AG-TCTCCTGGGCTTCATAGCACAA- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1776088 78 + 3286835 CCACCACCAGGGCATCC-CCAAGGCTGCAGGGGACTAAGGCTGTTTTGTGGAAAGGG-TCTCCCGAGCTTGATAGCATGA- i micMur3.chrUn_NW_017968520v1 C 0 I 1 s otoGar3.GL873602 8602911 77 + 8790067 CCACCACCAGGGCATCCTCCATGGCTGCAGGGCACCAAGGC--TTTTGTGGGAAGGG-TCCTCTGGGATTGTTAGCATGG- i otoGar3.GL873602 C 0 I 1 s canFam3.chr13 47975816 80 + 63241923 CCACTTCCAGGACATCCTCTGAGGTTGCAGAAAACTCAGGCTGTCTTGTGAGAA-GGATTTCCTAGGCTTAACAGCACTAC i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1864890 191 + 4188776 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I a score=948648.000000 s hg38.chr4_KI270787v1_alt 49429 64 + 111943 TCTGGCCCTCCAAGATTATCCTTCTCCTTAGGGATATCTAGCACATGATCACCCCCACTATGAC s panTro5.chr4 119614467 64 - 194502333 TCTGGCCCTCCAAGATTATCCTTCTCCTTAGGGATATCTAGCACATGATCACCCCCACTATGAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121027877 64 - 195804263 TCTGGCCCTCCAAGATTATCCTTCTCCTTAGGGATATCTAGCACATGATCACCCCCACTATGAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459151 64 - 17550833 TCTGGCCCTCCAAGATTATCCTTCACCTTAGGGATATCTAGCACATGATCACCCCCACTATGAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69332040 64 - 118206036 TCTGGCCCTCCAAGATTCTCCTTCACCTTAGGGATATCTAGCACATGATCACCCCCACTATGAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111535811 64 - 190429646 TCTGGCCCTCCAAGATTCTCCTTCATCTTAGGGAGATCTAGCACATGATCACCCCCACTATGAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110703950 64 - 189454096 TCTGGCCCTCCAAGATTCTCCTTCATCTTAGGGAGATCTAGCACATGATCACCCCCACTATGAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13271991 64 + 26754465 TCTGGCCCTCCAAGATTCTCCTTCATCTTAGGGAGATCTAGCACATGATCACCCCCACTATGAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4173283 64 - 5137665 TCTGGCCCTCCAAGATTCTCCTTCATCTTAGGGAGATCTAGCACATGATCACCCCCACTATGAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122888130 64 - 135778131 TCTGGCCCTCCAAGATTCTCCTTCATCTTAGGGAGATCTAGCACATGATCACCCCCACTATGAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1989964 64 + 2427316 TCTGGCCCTCCAAGATTCTCCTTCATCTTAGGGAGATCTAGCACATGATCACCCCCACTATGAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283516 64 + 1448899 TCTGGCCCTCCAAGATTCTCCTTCACCTTAGGGAGATCTAGCACATTATCACCCCCACTATGAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53009043 64 - 190850796 TCTGGCCCTCCAAGATTCTCCTTCACCCTAGGGAGATCTAACACATGATCACCCCCACTATGAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8169464 64 - 15139346 TCTGGCCCTCCAAGATTCTCCTTTACCCTAGGGAGATCTAACACATGATCACGCCCACTATAAC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6953155 64 - 7304997 TCTGGCTCTCCAAGATTCTCCTTCACCCTAGGGAGATCTAACACATGATCACCCCCGCTATGAC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9371206 64 - 11631747 TCTGGCCCTCCAAGATTCTCCTTCACCCTAGGGAGATCTAACACATGATCACCCCCACTATGAC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1776167 64 + 3286835 TCTGGTCTTCCAAGATTCTCCTTCCCCTTGGGGAGATCTAGCAAGTGATCACCCCCACTATGAC i micMur3.chrUn_NW_017968520v1 I 1 C 0 s proCoq1.NW_012140747v1 1865081 64 + 4188776 TCTGGTCTTCCAAGATTCTCCTTCCCCTTAGGGAGATCTAGCAAGTGATCACCCCCACTATGAC i proCoq1.NW_012140747v1 I 191 I 26 s otoGar3.GL873602 8602989 61 + 8790067 TCTGGTCTTCCAAGATTTTCCTTTCCCATAGGGAGACCTAAC--GTGATCA-CCCCACTATGAT i otoGar3.GL873602 I 1 C 0 s canFam3.chr13 47975896 63 + 63241923 TCAAGTTCTCTGAGATTTGCCTTCACCTT-TGGAGTTCTGGCACATGATTATACCTACCATGAC i canFam3.chr13 C 0 C 0 e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I a score=3762412.000000 s hg38.chr4_KI270787v1_alt 49493 302 + 111943 CCTGCTGGACTTAAGAGGGTGAAGCTTC-----AAGGACAC---------------CCAAATCCTTTCACATCTGAACCAAATGGACCGAAGCTTTGAAAGAAGCTGGAGTTTCCTCATGGCCTGTCTAGCCTCCTTGGTGAATTCTGGTGTCCAGAGGACCTTTCATTTGCTCTAATGGCTGCCATCCAGTAACAACATCTTTCTCAATAGAGAGGTACCACTCAGTT-------TTTACCCATAAGGGTACAG-CCTAACC-----------CAGCCCATCAAGACAGGGACACCACACAAGCCTAAATATTCTGTTTGCCCTGAGAGGGCTGGAGGCG s panTro5.chr4 119614531 302 - 194502333 CCTGCTGGACTTAAGAGGGTGAAGCTTC-----AAGGACAC---------------CCAAATCCTTTCACATCTGAACCAAATGGACCGAAGCTTTGAAAGAAGCTGGAGTTTCCTCATGGCCTGTCTAGCCTCCTTGGTGAATTCTGGTGTCCAGAGGACCTTTCATTTGCTCTAATGGCTGCCATCCAGTAACAACATCTTTCTCAATAGAGAGGTACCACTCAGTT-------TTTACCCATAAGGGTACAG-CCTAACT-----------CAGCCCATCAAGACAGGGACACCACATAAGCCTAAATATTCTGTTTGCCCTGAGAGGGCTGGAGGCG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121027941 302 - 195804263 CCTGCTGGACTTAAGAGGGTGAAGCTTC-----AAGGACAC---------------CCAAATCCTTTCACATCTGAACCAAATGGACCGAAGCTTTGAAAGAAGCTGGAGTTTCCTCATGGCCTGTCTAGCCTCCTTGGTGAATTCTGGTGTCCAGAGGACCTTTCATTTGCTCTAATGGCTGCCATCCAGTAACAACATCTTTCTCAATAGAGAGGTACCACTCAGTT-------TTTACCCATAAGGGTACAG-CCTAACC-----------CAGCCCATCAAGACAGGGACACCACATAAGCCTAAATATTCTGTTTGCCCTGAGAGGGCTGGAGGCG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459215 302 - 17550833 CCTGCTGGACTTAAGAGGGTGAAGCTTC-----AAGGACAC---------------CCAAATCCTTTTACATCTGAACCAAATGGACCAAAGCTTTGAAAGAAGCTGGAGTTTCCTCATGGCCTGTCTAGCCTCCTTGGTGAATTCTGGTGTACAGAGGACCTTTCATTTGCTCTAATGGCTGCCATCCAGTAACAACATCTTTCTCAATAGAGAGGTACCACTCAGTT-------CTTACCCATAAGGGTACAG-CCTAACC-----------CAGCCCATCAAGACAGGGACACCACACAAGCCTAAATATTCTGTTTGCCCTGAGAGGGCTGGAGGCG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69332104 300 - 118206036 CCTGCTGGACTCAAGA--GTGAAGCTTC-----AAGGACAC---------------CCAGATCCTTTTACATCTGAACCAAAAGGACTGAAGCTTTGAAAGAAGCTAGAGTTTCCTCACAGCCTGTCTAGCCTCCTTGGTGAATTCTGGTGTCCGGAGGACCTTTCATTTGCTCTAATGGCTGCCATCCAGTAACAACATCTTTCTCAATAGAGAGGCACCACTCAGTT-------CTTACCCATAAGGGTACAG-CCTAACC-----------CAGCCCATCAAGACAGGGACACCACACAAGCCTAAATATTCTGTTTGCCCTGAGAGGGCTGGAGGCG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111535875 305 - 190429646 CCTGCTGGACTCAAGAGGGTGAAGCTTC-----AAGGACAC---------------CCAGATCCTTTTACATCTGAACCAAATGGACTGAAGCTTTGAAAGAAGCTGGAGTTTCCTCACGGCCTATCCAGCCTCCTTGGTGAATACTGGTGTCCAGAGGACCTTTCATTTGCTCTAATGGCTGCCATCCAGTAACAACATCCTTCTCAATAGAGAGGCACCACTCAATT-------CTTACCCATAAGGGTACAG-TCTAACC--------CCACAGCCCATCAAGACAGGGACACTACACAAGCCTAAATCTTCTGTTTGCACTGAGAGGGCTGGAGGCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110704014 305 - 189454096 CCTGCTGGACTCAAGAGGGTGAAGCTTC-----AAGGACAC---------------CCAGATCCTTTTACATCTGAACCAAATGGACTGAAGCTTTGAAAGAAGCTGGAGTTTCCTCACGGCCTATCCAGCCTCCTTGGTGAATACTGGTGTCCAGAGGACCTTTCATTTGCTCTAATGGCTGCCATCCAGTAACAACATCCTTCTCAATAGAGAGGCACCACTCAATT-------CTTACCCATAAGGGTACAG-TCTAACC--------CCACAGCCCATCAAGACAGGGACACTACACAAGCCTAAATCTTCTGTTTGCACTGAGAGGGCTGGAGGCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13272055 305 + 26754465 CCTGCTGGACTCAAGAGGGTGAAGCTTC-----AAGGACAC---------------CCAGATCCTTTTACATCTGAACCAAATGGACTGAAGCTTTGAAAGAAGCTGGAGTTTCCTCACGGCCTATCCAGCCTCCTTGGTGAATACTGGTGTCCAGAGGACCTTTCATTTGCTCTAATGGCTGCCATCCAGTAACAACATCCTTCTCAATAGAGAGGCACCACTCAATT-------CTTACCCATAAGGGTACAG-TCTAACC--------CCACAGCCCATCAAGACAGGGACACTACACAAGCCTAAATCTTCTGTTTGCACTGAGAGGGCTGGAGGCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4173347 305 - 5137665 CCTGCTGGACTCAAGAGGGTGAAGCTTC-----AAGGACAC---------------CCAGATCCTTTTACATCTGAACCAAATGGACTGAAGCTTTGAAAGAAGCTGGAGTTTCCTCACGACCTATCCAGCCTCCTTGGTGAATACTGGTGTCCGGAGGACCTTTCATTAGCTCTAATGGCTGCCATCCAGTAACAACATCCTTCTCAATAGAGAGGCACCACTCAATT-------CTTACCCATAAGGGTACAG-TCTAACC--------CCACAGCCCATCAAGACAGGGACACTACACAAGCCTAAATCTTCTGTTTGCACTGAGAGGGCTGGAGGCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122888194 304 - 135778131 CCTGCTGGACTCAAGAGGGTGAAGCTTC-----AAGGACAC---------------CCAGATCCTTTTACATCTGAACCAAATGGACTGAAGCTTTGAAAGAAGCTGGAGTTTCCTCACGGCCTATCCAGCCTCCTTGGTGAATACTGGTGT-CGGAGGACCTTTCATTTGCTCTAATGGCTGCCATCCAGTAACAACATCCTTCTCAATAGAGAGGCACCACTCAATT-------CTTACCCATAAGGGTACAG-TCTAACC--------CCACAGCCCATCAAGACAGGGACACTACACAAGCCTAAATCTTCTGTTTGCACTGAGAGGGCTGGAGGAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1990028 305 + 2427316 CCTGCTGGACTCAAGAGGGTGAAGCTTC-----AAGGACAC---------------CCAGATCCTTTTACATCTGAACCAAATGGACTGAAGCTTTGAAAGAAGCTGGAGTTTCCTCACGACCTATCCAGCCTCCTTGGTGAATACTGGTGTCCAGAGGACCTTTCATTAGCTCTAATGGGTGCCATCCAGTAACAACATCCTTCTCAATAGAGAGGCACCACTCAATT-------CTTACCCATAAGGGTACAG-TCTAACC--------CCACAGCCCATCAAGACAGGGACACTACACAAGCCTAAATCTTCTGTTTGCACTGAGAGGGCTGGAGGCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283580 305 + 1448899 CCTGCTGGACTCAAGAGGGTGAAGCTTC-----AAGGACAC---------------CCAGATCCTTTTACATCTGAACCAAATGGACTGAAGCTTTTAAAGAAGCTAGAGTTTCCTCACGGCCTATCCAGCCTCCTTGGTGAATACTGGTGTCTGGAGGACCTTTCATTTGCTCTAATGGCTGCCATCCAGTAACAACATCCTTCTCAATAGAGAGGCACCACTCAATT-------CTTACCCATAAGGGTACAG-CCTAACC--------CCACAGCCCATCGAGACAGGGACACCACACAAGCCTAAATCTTCTGTTTGCACTGAGAGGGCTGGAGGCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53009107 310 - 190850796 TATGCTAGACTTAAGAGGGTGAAGTTTCAAGGAAAGGACAC---------------CCAGATCCTTTTACATCTGAACCATATGGACTGAATCTTTGAAAGAAGCTGGAGTTCCCTCATGGCCTGTCCAGCCTCCTTGGTGAATTCTGGTGTCCAAAGGACCTTTCATTTGCTCTAATGGCTGCCATCCAGTAACAACATCCTTCTCTATAGAGAGGCACCACTCAATT-------CTTACCCATAAGGGTACAG-CCTAACC--------ACACAGCCTATCAAGACAGGGACACTTCACAAGCCTAAGTCTTCTGTTTGCACTGAGAGGGCTAGAGGCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8169528 305 - 15139346 CATGCTGGACTCAAGAGGGTGAAGTTTC-----AAGGACAC---------------CCAGATCCTTTTACATCTGAACCACATGGACTGAATCTTTGAAAGAAGCTGGAGTTCCCTCATGGCCTGTCCAGCCTCCTTGGTGAATTCTGGTGTCCAAAGGACCTTTCATTTGCTCTAATGGCTGCCATCCAGTAACAACATCCTTCTCTATAGAGAGGCACCACTTGATT-------CTTACCCATAAGGGTACAG-CCTAACC--------CCACAGCCTGTCAAGACAGGGACACCTCACAAGCCTAAATCTTCTGTTTGCACCGAGAGGGCTGGAGGCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6953219 310 - 7304997 CATGCTGGACTCAAGAGGGTGAAATTGCAAGGAAAGAACAC---------------CCAGATCCTTTTACATCTGAACCACATGGACTGAATCTTTGAAAGAAGCTGGAGTTCCCTCATGGCCTGTCCAGCCTCCTTGGTGAATTCTGGTGTCCAAAGGACCTTTCATTTGCTCTAATGGCTGCCATCCAGTAACAACATCCTTCTCTATAGGGAGGCACCACTCAATT-------CTTACCCATAAGGGTATAG-CCTAACC--------CCACATCCTATCAAGACAGGGATACCTCACAAGCCTAAATCTTCTGTTTGCACTGAGAGGGCTGGAGGCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9371270 305 - 11631747 CATGCTGGACTCAAAAGGGTGAAGTTTC-----AAGGACAC---------------CCAGATCCTTTTACATCTGAACCAAATGGATTGAATCTTTGAAAGAAGCTGGAGTTCCCTCATGGCCTGTCCAGCCTCCTTGGTGAATTCTGGTGTCCAAAGGACCTTTCATTTGCTCTAATGGCTGCCATCCAGTAACAACATCCTTCTCTATAGAGAGGCACCACTCAATT-------CTTACCCATAAGGGTACAG-CCTAACC--------CCACAGCCTATCAAGACAGGGACACCTCACAAGCCTAAATCTTCTGTTTGCACTGAGAGGGCCGGAGGCA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1776231 318 + 3286835 TCTGCGGGATTCAAGAAAGTGAAGCTTC-----AAGGACAC---------------CCAGATCCTTTTACACCTGGACCCAAAGGACTGAAGCCTTGAGACAAGCTGGAGTACCTACAATGCCCGTCCAGCTTCCTTGGTGAAGGCTGGTATCCTGAGGACCTTCCAT-TATCCTAATGGCTGCCATTCAGTAACAAGATCCTTCTCA--AGAGAGACACCACCTGCTTCCTGCTTCTTATCCATAAGGGTGCAGACTTACCCCATGGCTTCCAGAGGCCATCAAGACAAGAACACTGCACGAGCCTAAACCTTCTGATTGCACTGAGAGCACTGGAGGAG i micMur3.chrUn_NW_017968520v1 C 0 I 20 s otoGar3.GL873602 8603050 297 + 8790067 TCTGAGGGTCTCAAG-------------------AGGAAAC---------------CCAGGTTCTTTTACCCCTGGACCCAAGGGACTAAATCCTTGAGACAAGCTAGAGTTCCTTCACTGCCTGTGCTGCTTCCTTGGTGAGTTCTGGTGTCCTGAGGACCTTCCATGTGCCCTGATGGCTGCCAT------GCAAGGTCCTTGTGA--AGGCAGATACCACCTGCTTCCTGCTCCTTATTCAC-AGGGAGCAG-CTTAGCCCCCAGCTTCCAAAGACCATCAAGACAGGAACACCACCCACACCTAAATCTTCTGTTGGTACTGAGAGCACTGGAGGAG i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47975959 321 + 63241923 CCTAATGAACTTCAAGGG--GAAGCTTC-----AAGGACCTACACCAAAAGCTTCACCAGACACCTTTTCATGAAGACCCAAAGAATAAGGCCTTGAGGAAAAACTGGAGTCTCCTCACTGCCTGTCCAGCCTTGGCAGTGGATTTTGGTTTCCTAAGGACTATTCATATGCCCCAGTGGCTACCATACAGT-ATAAGATCCTTCTCAATAGAGA--CATCATCTGCTG-------TTTACTCACAAGGATTTGG-CATACCCCACAACTTCTGCAGGCCATC-AGACAGGTATACTACACAAGCCTAAATCTTTCATCTACATCAAGAGGGTAGGATTT- i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1865145 26 + 4188776 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I a score=233954.000000 s hg38.chr4_KI270787v1_alt 49795 21 + 111943 GTTATCACCCCTCCCATCTCT s panTro5.chr4 119614833 21 - 194502333 GTTATCACCCCTCCCATCTCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121028243 21 - 195804263 GTTATCACCCCTCCCATCTCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459517 21 - 17550833 GTTATCACCCCTCCCATCTCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69332404 21 - 118206036 GTTATCACCACTCCCATCTCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111536180 21 - 190429646 GTTATCACCACTCCCATCTCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110704319 21 - 189454096 GTTATCACCACTCCCATCTCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13272360 21 + 26754465 GTTATCACCACTCCCATCTCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4173652 21 - 5137665 GTTATCACCACTCCCATCTCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122888498 21 - 135778131 GTTATCACCACTCCCATCTCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1990333 21 + 2427316 GTTATCACCACTCCCATCTCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283885 21 + 1448899 GTTATCACCACTCCCATCTCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53009417 21 - 190850796 GTTACCACCACTCCCATCTCC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8169833 21 - 15139346 CTTACCACCACTCCCATCTCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6953529 21 - 7304997 GTTACCACCATTCCCATCTCC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9371575 21 - 11631747 GTTACCACCACTCCCATCTCT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8603347 16 + 8790067 -----CATTACTTCACACCCT i otoGar3.GL873602 C 0 I 3 s canFam3.chr13 47976280 20 + 63241923 -TTGCCACCACACTCATCTGT i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1865145 26 + 4188776 I e micMur3.chrUn_NW_017968520v1 1776549 20 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I a score=2892973.000000 s hg38.chr4_KI270787v1_alt 49816 228 + 111943 GTGGCTGAATTCTTGACTGATGCTGTATTTCCCAGGAT-----CTTCTCTGGTCTCCCACAAGCACGAGAGCCCTGCCTAAAATAGTTTCAGTTCACTGGAGCCCTAATTCCCACATCCAGAATATGATAGCCCTGTTTCTCCAGGCTGTATCTTGCTTCCA-GGACGCCTTCCAGATATAC-CATCTACACA-CCCTTCTGAATCCAAAAAGTCCTTGCTTCCCAGTCTTGCCCT s panTro5.chr4 119614854 228 - 194502333 GTGGCTGAATTCTTGACTGATGCTGTATTTCCCAGGAT-----CTTCTCTGGTCTCCCACAAGCACTAGAGTCCTGCCTAAAATAGTTTCAGTTCACTGGAGCCCTAATTCCCACATCCAGAATATGATAGCCCTGTTTCTCCAGGCTGTATCTTGCTTCCA-GGACGCCTTCCAGATATAC-CATCTACACA-CCCTTCTGAATCCAAAAAGTCCTTGCTTCTCAGTCTTGCCCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121028264 228 - 195804263 GTGGCTGAATTCTTGACTGATGCTGTATTTCCCAGGAT-----CTTCTCTGGTCTCCCACAAGCACTAGAGTCCTGCCTAAAATAGTTTCAGTTCACTGGAGCCCTAATTCCCACATCCAGAATATGATAGCCCTGTTTCTCCAGGCTGTATCTTGCTTCCA-GGACGCCTTCCAGATATAC-CATCTACACA-CCCTTCTGAATCCAAAAAGTCCTTGCTTCTCAGTCTTGCCCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459538 228 - 17550833 GTGGCTGAATGCTTGACTGATGCTGTATTTCCCAGGAT-----CTTCTCTGGTCTCCCACAAGCACTAGAGCCCTGCCTAAAATAGTTTCAGTTCACTGGAGCCCTAATTCCCACATCCAGAATATGATAGCCCTGTTTCTCAAGGCTGTATCTTGCTTCCA-GGACGCCTTCCAGATATAC-CATCTACACA-CCCTTCTGAATCCAAAAAGTCCTTGCTTCCCAGTCTTGCCCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69332425 228 - 118206036 GTGGCTGAATGCTTGACTGATGCTATATTTCCCAGGAT-----CTTCTCTGGTCTCCCACAAGCACTAGAGCCCTGCCTAAAATAGTTTCAGTTCACTGGAGCCCTAATTCCCACATCCAGAACATGATAGCCCTGTTTCTCAAGGCTGTATCTTGCTTCTA-GAACGCCTTCCAGATATAC-CATCTACACA-TCCTTCTGAATCCAACGAGTCCTTGCTTCCCAGTCTTGCCCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111536201 228 - 190429646 GTGGCTGAATGCTTGACGGATGTTATATTTCCCAGGAT-----CTTCTCTGCTCTCCCACAAGCACTAGAGCCCTGGCTAAAATAGTTTCAGTTCACTGGAGCCCTAATTCCCACATCCAGAACATGATAGCCCTATTTCTCAAGGCTCTATCTTGCTTCCA-GGATGCCTTCCAGATATAC-CATCTACACA-CCCTTCTAAATCCAAAAAGTTCTTGCTTCCCAGCCTTGCTCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110704340 228 - 189454096 GTGGCTGAATGCTTGACGGATGTTATATTTCCCAGGAT-----CTTCTCTGCTCTCCCACAAGCACTAGAGCCCTGGCTAAAATAGTTTCAGTTCACTGGAGCCCTAATTCCCACATCCAGAACATGATAGCCCTATTTCTCAAGGCTGTATCTTGCTTCCA-GGATGCCTTCCAGATATAC-CATCTACACA-CCCTTCTAAATCCAAAAAGTTCTTGCTTCCCAGCCTTGCTCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13272381 228 + 26754465 GTGGCTGAATGCTTGACGGATGTTATATTTCCCAGGAT-----CTTCTCTGCTCTCCCACAAGCACTAGAGCCCTGGCTAAAATAGTTTCAGTTCACTGGAGCCCTAATTCCCACATCCAGAACATGATAGCCCTATTTCTCAAGGCTGTATCTTGCTTCCA-GGATGCCTTCCAGATATAC-CATCTACACA-CCCTTCTAAATCCAAAAAGTTCTTGCTTCCCAGCCTTGCTCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4173673 228 - 5137665 GTGGCTGAATGCTTGACGGATGCTATATTTCCCAGGAT-----CTTCTCTGGTCTCCCACAAGCACTAGAGCCCTGGCTAAAATAGTTTCAGCTCACTGGAGCCCTAATTCCCACATCCAGAACATGATAGCCCTATTTCTCAAGGCTGTATCTTGCTTCCA-GGATGCTTTCCAGATATAC-CATCTACACA-CCCTTCTGAATCCAAAAAGTTCTTGCTTCCCAGCCTTGCTCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122888519 228 - 135778131 GTGGCTGAATGCTTGACGGATGGTATATTTCCCAGGAT-----CTTCTCTGGTCTCCCACAAGCACTAGAGCCCTGGCTAAAATAGTTTCAGTTCACTGGAGCCCTAATTCCCACATCCAGAACATGATAGCCCTATTTCTCAAGGCTGTATCTTGCTTCCA-GGATGCCTTCCAGATATAC-CATGTACACA-CCCTTCTGAATCCAAAAAGTTCTTGCTTCCCAGCCTTGCTCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1990354 228 + 2427316 GTGGCTGAATGCTTGACGGATGCTATATTTCCCAGGAT-----CTTCTCTGGTCTCCCACAAGCACTAGAGCCCTGGCTAAAATAGTTTCAGCTCACTGGAGCCCTAATTCCCACATCCAGAACATGATAGCCCTATTTCTCAAGGCTATATCTTGCTTCCA-GGATGCCTTCCAGATATAC-CATCTACACA-CCCTTCTGAATCCAAAAAGTTCTTGCTTCCCAGCCTTGCTCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1283906 228 + 1448899 GTGGCTGAATGCTTGACAGATGCTGTATTTCCCAGGAT-----CTTCTCTGGTCTCCCACAAGCACTAGAGCCCTGGCTAAAATAGTTTCAGTTCACTGGAGCCCTAATTCCCACATCCAGAACATGGTAGCCCTATTTCTCAAGGCTGTATCTTGCTTCCA-GGATGCCTTCCAGATATAC-CATTTACATA-CCCTTCTGAATCCAAAAAGTTCTTGCTTCCCAGCCTTGCTCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53009438 228 - 190850796 ATGGCTGAATGCTTGACTGATACTGTATTTCCCAGGAT-----CCTCTCTGGTCTCCCACAAGCACTAGAGCCCTGCCTAAAACAGTTTCAGTTTACTGGAGCTCTAATTCCCACATCCAGAGCATGATAGTCCTATTTCTCAAGGCTCTAGCTTGCTTCCA-GGACTCCCTCCAGATGTAC-TATCTATGCA-TCCCTCTGAATCCAAAAAGTCCTTGCTTCCCAGCCTTGCCCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8169854 224 - 15139346 GCAGCTGAATGCTTGACTGATACTGTATTTCCCAGGAT-----CCTCTCTGGTCTCCCGCAAGCACTAGAGCCCTGCCTAAAACAGTTTCCGTTCACTGGAGCTCTAATTCCCACATCCAGAACATAGTAGTCCTATTTCTCAAGGCTCTATCTTGCTTCCA-GGACCCCTTCTAGATATAC-CATCTATGCA-TCCCTCTGAATCTAAAAAGTC----CTTCCCAGCCTTGCCCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6953550 224 - 7304997 GTGGCTTAATGCTTGACTGACACTGTATTTCCCAGGAT-----CCTCTCTGGACTCCCACAAGCACTAGAGTCCTGCCTAAAACAGTTTCAGTTCACTGGAGCTCTAATTCCCACATCCAGAACATGATAGTCCTATTTCTCAAGGCTTTATCTTGCTTCCA-GGACCCCTTCTAGATATAC-CATCTATGCA-TCCCTCTGAATCCAAAAAGTC----CTTCCCAGCCTTGCCCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9371596 225 - 11631747 GTGGCTGAATGCTTGACTGATGCTGTATTTCCCAGGAT-----CCTCTCTGGTCTCCCACAAGCACTAGAGCCCTGCCTAAAACAGTTTCAGTTCACTGGAGCTCTAATTCCCACATCCAGAACATGATAGTCCTATTTCTCAAGGCCCTATCTTGCTTCCA-GGATCCCTTCCAGATACACTCATCTATGCA-TCCCTCTGAATCCAAAAAGTC----CTTCCCAGCCTTTCCCT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1776569 228 + 3286835 ATGGCCAAGTGTTTGACTGATACTGTGTTTCCCAGAAT-----CTCCTCTGGTTTCCCACAAGCGCTAGAGCCCTAACTTAAACAGTCTCAGTTCACTGGAGCCCTAATTCCCACATCCAGAACATGACAGTCTGGGTTCTCAAGGCTCTATGGTGCTTACA-GGATCCTTTCCTGATATAC-GACTGACACA-CCCCTGTGAATCCAAAAAGTCCTTGCTTCCCAGCCTTGCCCT i micMur3.chrUn_NW_017968520v1 I 20 I 628 s otoGar3.GL873602 8603366 203 + 8790067 ATG--------------------TGTGTTTCCCAGAAT-----CTCCTCTGGACTCTCACAAGCACTAGAGC-----CTTAAACAGTCTCAGTTCACTCCAGCCCTGATTCCCACATCCAGAATATGAGAGTCCCATTCCTCAGGGCTATATGGAGCTTACAGGGATCCCTTCCAGATACAC-TATTGACACA--CCCTGTGAATTCAAAAAGGTCTTCCTTCCCAGCCTTGCCCT i otoGar3.GL873602 I 3 C 0 s canFam3.chr13 47976300 231 + 63241923 -TGCCAGGATGTTTGTTTGATATCTTATCTCTCAAGATTCTGCCTCCACTAATTTCCCACAAGCACTAGAGCCTTGCGTTTAATGGT-GCAGTTCACTGGAACCCTAATATCTATATCTAGAACATGGCAGTCTTATTTCTCAAAGCTGTATCTTGCTTCCT-GGATCCCTTCTTGTTATAC-TTTTTATACAACCCTTCTGAATCTCAAAAGCTC-AGCTTCCCAGCCTTATTCT i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1865145 26 + 4188776 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I a score=78335.000000 s hg38.chr4_KI270787v1_alt 50044 9 + 111943 ACCCTCTGA s panTro5.chr4 119615082 9 - 194502333 ACCCTCTGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121028492 9 - 195804263 ACCCTCTGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459766 7 - 17550833 ACCCTCT-- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69332653 9 - 118206036 ACCCTCTGA i nomLeu3.chr9 C 0 I 2 s rheMac8.chr5 111536429 9 - 190429646 ACCCACTGA i rheMac8.chr5 C 0 I 2 s macFas5.chr5 110704568 9 - 189454096 ACCCACTGA i macFas5.chr5 C 0 I 2 s macNem1.NW_012012466v1 13272609 9 + 26754465 ACCCACTGA i macNem1.NW_012012466v1 C 0 I 2 s cerAty1.NW_012001307v1 4173901 9 - 5137665 ACCCACTGA i cerAty1.NW_012001307v1 C 0 I 2 s chlSab2.chr7 122888747 9 - 135778131 ACCCACTGA i chlSab2.chr7 C 0 I 2 s manLeu1.NW_012104388v1 1990582 9 + 2427316 ACCCACTGA i manLeu1.NW_012104388v1 C 0 I 2 s colAng1.NW_012119221v1 1284134 9 + 1448899 ACCCACTGA i colAng1.NW_012119221v1 C 0 I 2 s calJac3.chr3 53009666 9 - 190850796 ACCTGCTGA i calJac3.chr3 C 0 I 2 s saiBol1.JH378162 8170078 9 - 15139346 ACCTGCTGA i saiBol1.JH378162 C 0 I 2 s cebCap1.NW_016107439v1 6953774 9 - 7304997 ACCTGCTGA i cebCap1.NW_016107439v1 C 0 I 2 s aotNan1.NW_018493494v1 9371821 9 - 11631747 ACCTGCTGA i aotNan1.NW_018493494v1 C 0 I 2 s otoGar3.GL873602 8603569 8 + 8790067 -GCCCCTGG i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47976531 9 + 63241923 GCCTCATGA i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1865145 26 + 4188776 I e micMur3.chrUn_NW_017968520v1 1776797 628 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I a score=1042948.000000 s hg38.chr4_KI270787v1_alt 50053 83 + 111943 --GAGAGAGTTTGAATCCTGATGCCAGATTGGGTTGGACTAAAGcaatgttttccaaa-tttctctagtc-ataaaagctcatcagg s panTro5.chr4 119615091 83 - 194502333 --GAGAGAGTTTGAATCCTGATGCCAGATTGGGTTGGACTAAAGcaatgttttccaaa-tttctctagtc-ataaaagctcatcagg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121028501 83 - 195804263 --GAGAGAGTTTGAATCCTGAAGCCAGATTGGGTTGGACTAAAGcaatgttttccaaa-tttctctagtc-ataaaagctcatcagg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459773 81 - 17550833 ----GAGAGTTTGAATCCTGATGCCAGATTGGGTTGGACTAAAGcaatgttttccaaa-tttctctagtc-agaaaagctcatcagg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69332664 84 - 118206036 --GAGAGAACTTGAATCCTGATGCCAGATTGGGTTGGACTAAAGCAATGTTTTCCAAA-TTTCTCTAGTCAAAAAaaactcatcagg i nomLeu3.chr9 I 2 C 0 s rheMac8.chr5 111536440 83 - 190429646 --GAGAGAATTTGAATACTGATGCCAGATTGGGTTGGACTAAAGCAATGTTTTCCAAA-TTTCTCTAGTC-ATACGAACTCATCAGG i rheMac8.chr5 I 2 C 0 s macFas5.chr5 110704579 83 - 189454096 --GAGAGAATTTGAATACTGATGCCAGATTGGGTTGGACTAAAGcaatgttttccaaa-tttctctagtc-atacgaactcatcagg i macFas5.chr5 I 2 C 0 s macNem1.NW_012012466v1 13272620 83 + 26754465 --GAGAGAATTTGAATACTGATGCCAGATTGGGTTGGACTAAAGCAATGTTTTCCAAA-TTTCTCTAGTC-ATACGAACtcatcagg i macNem1.NW_012012466v1 I 2 C 0 s cerAty1.NW_012001307v1 4173912 83 - 5137665 --GAGAGAATTTGAATACTGATGCCAGATTGGGTTGGACTAAAGCAATGTTTTCCAAA-TTTCTCTAGTC-ATACAAACtcatcagg i cerAty1.NW_012001307v1 I 2 C 0 s chlSab2.chr7 122888758 83 - 135778131 --GAGAGAATTTGAATACTGATGCCAGATTGGGTTGGACTAAAGcaatgttttccaaa-tttctctagtc-atacaaactcatcagg i chlSab2.chr7 I 2 C 0 s manLeu1.NW_012104388v1 1990593 83 + 2427316 --GAGAGAATTTGAATACTGATGCCAGATTGGGTTGGACTAAAGCAATGTTTTCCAAA-TTTCTCTAGTC-ATACAAACtcatcagg i manLeu1.NW_012104388v1 I 2 C 0 s colAng1.NW_012119221v1 1284145 83 + 1448899 --GAGAGCATTTGAATACTGATGCCAAATTGGGTCGGACTAAAGCAATGTTTTCCAAA-TTTCTCTAGTC-ATACAAACtcatcagg i colAng1.NW_012119221v1 I 2 C 0 s calJac3.chr3 53009677 83 - 190850796 --GAGTGAATTTGAATCCTGATGCCAGATTGGGATGGGCTAAAGcaatgttttccaaa-tttttctagtc-ataaaatgtcatcagg i calJac3.chr3 I 2 C 0 s saiBol1.JH378162 8170089 83 - 15139346 --GAGAGAATTCGAATCCTGATGCCAGACTGGGATGGACTAAAGcaatgttttccaaa-tttctctggtc-ataaaaagtcatcagg i saiBol1.JH378162 I 2 C 0 s cebCap1.NW_016107439v1 6953785 83 - 7304997 --GAGATAATTTGAATCCTGATGCCAGATTGGGATGGACTAAAGCAATGTTTTCCAAA-TGTCTCTAGTC-ATAAAAAGtcatcagg i cebCap1.NW_016107439v1 I 2 C 0 s aotNan1.NW_018493494v1 9371832 83 - 11631747 --GAGAGAATTTGAATCCTGATGCCAGATTGGGATGGACTAAAGcaatgttttccaaa-tttttctagtc-ataaaaagtcatcagg i aotNan1.NW_018493494v1 I 2 C 0 s proCoq1.NW_012140747v1 1865171 83 + 4188776 --GAGAGAATTTGAATTCTGATGCCAGACTGGGTTGGACTAAAGTAGTGTTTTCCAAA-TTTACCTAGTC-ATAAAAAGTCATCAGg i proCoq1.NW_012140747v1 I 26 I 562 s otoGar3.GL873602 8603577 81 + 8790067 --GAGAGAATGCAAA---TGGTGCCAGACTAGGTTGGACTAAAACAGTGTTTGCCAAATTTTACCTGGTC-ACAAAAAGTCATCAAg i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47976540 81 + 63241923 GTAAGAAAACTTTAATTCTGATTGTACACTATATTAGACTAAAGCAGTCTTTCCTAAA-ATTACTTAGTC-ATA----GTCATCAGG i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1776797 628 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I a score=44739.000000 s hg38.chr4_KI270787v1_alt 50136 4 + 111943 agca s panTro5.chr4 119615174 4 - 194502333 agca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121028584 4 - 195804263 agca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459854 4 - 17550833 agca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69332748 4 - 118206036 agca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111536523 4 - 190429646 AGCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110704662 4 - 189454096 agca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13272703 4 + 26754465 agca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4173995 4 - 5137665 agca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122888841 4 - 135778131 agca i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1990676 4 + 2427316 agca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1284228 4 + 1448899 agca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53009760 4 - 190850796 agca i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8170172 4 - 15139346 agca i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6953868 4 - 7304997 agca i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9371915 4 - 11631747 agca i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8603658 4 + 8790067 gcca i otoGar3.GL873602 C 0 I 333 s canFam3.chr13 47976621 4 + 63241923 TGTG i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1865254 562 + 4188776 I e micMur3.chrUn_NW_017968520v1 1776797 628 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I a score=707601.000000 s hg38.chr4_KI270787v1_alt 50140 66 + 111943 ctcattaaaaatacagaatcctaagctc-tctcctaaagatcctgctgtg-agagacatggggcaggg s panTro5.chr4 119615178 66 - 194502333 ctcattaaaaatacagaatcctaagctc-tctcctaaagatcctgctgtg-agagacatggggcaggg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121028588 66 - 195804263 ctcattaaaaatacagaatcctaagctc-tctcctaaagatcctgctgtg-agagacatggggcaggg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459858 66 - 17550833 ctcattaaaaatacagaatcctaggctc-tctcctaaagatcctgctgtg-agagacatggggcaggg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69332752 66 - 118206036 ctcattaaaaacacagaatcctaagctc-tctcctaaagatcctgctgtg-agagacatggggcaggg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111536527 67 - 190429646 CTCATTAAAAATACAGAATCCTAAGCTC-TTTCCTAAAGATCCTGCTGTTAAGAGACATGGGGCAGGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110704666 67 - 189454096 ctcattaaaaatacagaatcctaagctc-tttcctaaagatcctgctgttaagagacatggggcaggg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13272707 66 + 26754465 ctcattaaaaatacagaatcctaagctc-tttcctaaagatcctgctgtt-agagacatggggcaggg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4173999 66 - 5137665 ctcattaaaaatacagaatcctaagctc-tctcctaaagatcctgctgtt-agagacatggggcaggg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122888845 66 - 135778131 ctcattaaaaatacagaatcctaagctc-tttcctaaagatcctgctgtt-agagacatggggcaggg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1990680 66 + 2427316 ctcattaaaaatacagaatcctaagctc-tctcctaaagatcctgctgtt-agagacatggggcaggg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1284232 66 + 1448899 ctcattaaaaatacagaatcctaagctc-tctcctaaagatccggctgtg-agagacatggggcaggg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53009764 65 - 190850796 ctcatt-aaaatacagcatcctaagctc-tctcctaaaggttctgctgcg-ggagacacggagcaggg i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8170176 66 - 15139346 ctcattaaaaatacagcatcctaagctc-tctcctaaaggttctgctgcg-ggagacatggagcaggg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6953872 66 - 7304997 ctcattaaaaatacagcatcctaagctc-gctcctaaaggttctgctgtg-ggagacatggagcaggg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9371919 66 - 11631747 ctcattaaaaatatagaatcctaagctc-tctcctaaaggttctgctgca-ggagacatggggcaggg i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47976625 67 + 63241923 CTCATTTAAAATACAAAATTCTAAGCCCTTCTCCTATAAGttctagttca-ggatatctagggtaggg i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1865254 562 + 4188776 I e micMur3.chrUn_NW_017968520v1 1776797 628 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I e otoGar3.GL873602 8603662 333 + 8790067 I a score=790.000000 s hg38.chr4_KI270787v1_alt 50206 16 + 111943 tctggccgtgtatttt s canFam3.chr13 47976692 16 + 63241923 cctgataatgtatttt i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1865254 562 + 4188776 I e micMur3.chrUn_NW_017968520v1 1776797 628 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I e aotNan1.NW_018493494v1 9371985 0 - 11631747 C e cebCap1.NW_016107439v1 6953938 0 - 7304997 C e saiBol1.JH378162 8170242 0 - 15139346 C e calJac3.chr3 53009829 0 - 190850796 C e otoGar3.GL873602 8603662 333 + 8790067 I e panTro5.chr4 119615244 0 - 194502333 C e nomLeu3.chr9 69332818 0 - 118206036 C e colAng1.NW_012119221v1 1284298 0 + 1448899 C e manLeu1.NW_012104388v1 1990746 0 + 2427316 C e chlSab2.chr7 122888911 0 - 135778131 C e cerAty1.NW_012001307v1 4174065 0 - 5137665 C e macNem1.NW_012012466v1 13272773 0 + 26754465 C e rheMac8.chr5 111536594 0 - 190429646 C e macFas5.chr5 110704733 0 - 189454096 C e gorGor5.CYUI01014963v1 4459924 0 - 17550833 C e panPan2.chr4 121028654 0 - 195804263 C a score=0.000000 s hg38.chr4_KI270787v1_alt 50222 328 + 111943 ttttttttttttttttttttttttttttttttttttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgggatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccactacgcctggctaattttttgtatttttagtagagacagggtttcaccgttttagccgggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggc e proCoq1.NW_012140747v1 1865254 562 + 4188776 I e micMur3.chrUn_NW_017968520v1 1776797 628 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I e aotNan1.NW_018493494v1 9371985 0 - 11631747 C e cebCap1.NW_016107439v1 6953938 0 - 7304997 C e saiBol1.JH378162 8170242 0 - 15139346 C e calJac3.chr3 53009829 0 - 190850796 C e otoGar3.GL873602 8603662 333 + 8790067 I e canFam3.chr13 47976708 0 + 63241923 C e panTro5.chr4 119615244 0 - 194502333 C e nomLeu3.chr9 69332818 0 - 118206036 C e colAng1.NW_012119221v1 1284298 0 + 1448899 C e manLeu1.NW_012104388v1 1990746 0 + 2427316 C e chlSab2.chr7 122888911 0 - 135778131 C e cerAty1.NW_012001307v1 4174065 0 - 5137665 C e macNem1.NW_012012466v1 13272773 0 + 26754465 C e rheMac8.chr5 111536594 0 - 190429646 C e macFas5.chr5 110704733 0 - 189454096 C e gorGor5.CYUI01014963v1 4459924 0 - 17550833 C e panPan2.chr4 121028654 0 - 195804263 C a score=169605.000000 s hg38.chr4_KI270787v1_alt 50550 16 + 111943 cctggccgtgtatttt s panTro5.chr4 119615244 16 - 194502333 cctggccatgtatttt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121028654 16 - 195804263 cctggccatgtatttt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459924 16 - 17550833 cctggccatgtatttt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69332818 16 - 118206036 cctggccatgtatttt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111536594 16 - 190429646 CCTGGCCATGTGTTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110704733 16 - 189454096 cctggccatgtgtttt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13272773 16 + 26754465 cctggccatgtgtttt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4174065 16 - 5137665 cctggccatgtgtttt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122888911 16 - 135778131 cctggccatgcgtttt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1990746 16 + 2427316 cctggccatgtgtttt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1284298 16 + 1448899 cctggccatgtatttt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53009829 16 - 190850796 cctggccacgtatttt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8170242 16 - 15139346 cctggccatgtatttt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6953938 16 - 7304997 cctggccatgtatttt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9371985 16 - 11631747 cctggccatgtatttt i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1865254 562 + 4188776 I e micMur3.chrUn_NW_017968520v1 1776797 628 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I e otoGar3.GL873602 8603662 333 + 8790067 I e canFam3.chr13 47976708 0 + 63241923 C a score=202410.000000 s hg38.chr4_KI270787v1_alt 50566 17 + 111943 tagcaaatgtccaagat s panTro5.chr4 119615260 17 - 194502333 tagcaaatgtccaagat i panTro5.chr4 C 0 C 0 s panPan2.chr4 121028670 17 - 195804263 tagcaaatgtccaagat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459940 17 - 17550833 tagcaaatgtccaagat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69332834 17 - 118206036 tagcaaatgtccaagat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111536610 17 - 190429646 TAGCAAATGTCCAAGAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110704749 17 - 189454096 tagcaaatgtccaagat i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13272789 17 + 26754465 tagcaaatgtccaagat i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4174081 17 - 5137665 tagcaaatgtccaagat i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122888927 17 - 135778131 tagcaaatgtccaagat i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1990762 17 + 2427316 tagcaaatgtccaagat i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1284314 17 + 1448899 tagcaaatgtccaagat i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53009845 17 - 190850796 tagcaagtgcccaagat i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8170258 17 - 15139346 tagcaaatgcccaagat i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6953954 17 - 7304997 tagcaaatgcccaagat i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9372001 17 - 11631747 tagcgaatgcccaagat i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 47976708 17 + 63241923 taacaaatacccaagat i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1865254 562 + 4188776 I e micMur3.chrUn_NW_017968520v1 1776797 628 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I e otoGar3.GL873602 8603662 333 + 8790067 I a score=118913.000000 s hg38.chr4_KI270787v1_alt 50583 10 + 111943 gatcgctAGA s panTro5.chr4 119615277 10 - 194502333 gatcgctAGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121028687 10 - 195804263 gatcgctAGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459957 10 - 17550833 gatcgctAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69332851 10 - 118206036 gatcgctAGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111536627 10 - 190429646 GATTGCTAGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110704766 10 - 189454096 gattgctAGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13272806 10 + 26754465 gattgctagg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4174098 10 - 5137665 gatCGCTAGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122888944 10 - 135778131 gatcgctAGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1990779 10 + 2427316 gatCGCTAGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1284331 10 + 1448899 gattGCTAGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53009862 10 - 190850796 gattgctagg i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8170275 10 - 15139346 gattgctagg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6953971 10 - 7304997 gattgctagg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9372018 10 - 11631747 gattgctagg i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1865816 10 + 4188776 GATCCCTAGC i proCoq1.NW_012140747v1 I 562 C 0 s canFam3.chr13 47976725 10 + 63241923 gatCCCTAGA i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1776797 628 + 3286835 I e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I e otoGar3.GL873602 8603662 333 + 8790067 I a score=543089.000000 s hg38.chr4_KI270787v1_alt 50593 41 + 111943 ACTTTTTGATATTTAGAGAAACACTAGATTAAAGTTTGCTA s panTro5.chr4 119615287 41 - 194502333 ACTTTTTGATATTTAGAGAAACACTAGATTAAAGTTTGCTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121028697 41 - 195804263 ACTTTTTGATATTTAGAGAAACACTAGATTAAAGTTTGCTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4459967 41 - 17550833 ACTTTTTGATATTTAGAGAAACACTAGATTAAAGTTTGCTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69332861 41 - 118206036 ACTTTTTGATATTTAGAGAAACACTAGATTAAAGTTTGCTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111536637 41 - 190429646 ACTTTTTGATATTTAGAGAAACACTAGATTAAAGTTTGCTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110704776 41 - 189454096 ACTTTTTGATATTTAGAGAAACACTAGATTAAAGTTTGCTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13272816 41 + 26754465 actttttgatatttagagaaacactAGATTAAAGTTGGCTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4174108 41 - 5137665 ACTTTTTGATATTTAGAGAAACACTAGATTAAAGTTTGCTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122888954 41 - 135778131 ACTTTTTGATATTTAGAGAAACACTAGATTAAAGTTTGCTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1990789 41 + 2427316 ACTTTTTGATATTTAGAGAAACACTAGATTAAAGTTTGCTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1284341 41 + 1448899 ACTTTTTGGTATTTAGAGAAACACTAGATTAAAGTTTGCTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53009872 41 - 190850796 acttttggttatttagagaaacactAGATTGAAGTTTGCTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8170285 41 - 15139346 actttttgatatttagagaaacactAGATTAAAGTTTGCCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6953981 41 - 7304997 actttttgatatttagagaaacactAGATTAAAGTTTGCTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9372028 41 - 11631747 actgtttgatatttagagaaacactAGATTAAAGTTTGCTA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1777425 41 + 3286835 ACTTTTTGACATTGAGGAAAATACTAGATTTGAGTTTGCTA i micMur3.chrUn_NW_017968520v1 I 628 C 0 s proCoq1.NW_012140747v1 1865826 41 + 4188776 ACTTTTTGACATTGAGGGAAATACTAGATTTGAATTTGCTA i proCoq1.NW_012140747v1 C 0 C 0 s canFam3.chr13 47976735 30 + 63241923 AATTTTTGGCATTTAGGAAA-----------GAGTTTTCTG i canFam3.chr13 C 0 C 0 e mm10.chr5 76407579 1026 + 151834684 I e dasNov3.JH568349 4089688 1053 - 5279953 I e otoGar3.GL873602 8603662 333 + 8790067 I a score=2030468.000000 s hg38.chr4_KI270787v1_alt 50634 158 + 111943 TACTTTCTTAGACCTGGTGATTT---GGGTTTCTAGCC-----CTAGAAGGGC--TCAACCCTTTTGTCCCAACTAATTTCCCGTTGCTTCAACCTCAACCA-CTTCAATCCTGCCCTTCTTTCTTC-C---AT-TTCCCAGCATGTCTTATAGCCAACATCACCCTCACCATG s panTro5.chr4 119615328 158 - 194502333 TACTTTCTTAGACCTGGTGATTT---GGGTTTCTAGCC-----CTAGAAGGGC--TCAACCCTTTTGTCCCAACTAATTTCCCGTTGCTTCAACCTCAACCA-CTTCAATCCTGCCCTTCTTTCTTC-C---AT-TTCCCAGCATGTCTTATAGCCAACATCACCCTCACCATG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121028738 158 - 195804263 TACTTTCTTAGACCTGGTGATTT---GGGTTTCTAGCC-----CTAGAAGGGC--TCAACCCTTTTGTCCCAACTAATTTCTCGTTGCTTCAACCTCAACCA-CTTCAATCCTGCCCTTCTTTCTTC-C---AT-TTCCCAGCATGTCTTATAGCCAACATCACCCTCACCATG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4460008 158 - 17550833 TACTTTCTTAGACCTGATGATTT---GGGTTTCTAGCC-----CTAGAAGGGC--TCAACCCTTTTGTCCCAACTAATTTCCCGTTGCTCCAACCTCAACCA-CTTCAATCCTGCCCTTCTTTCTTC-C---AT-TTCCCAGCATGTCTTATAGCCAACATCACCCTCACCATG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69332902 158 - 118206036 TACTTTCTTAGACCTGGTGATTT---GGGTTTCTAGCC-----CTAGAAGGGC--TCAACCCTTTTGTCCCAACTCATTTCCTGTTGCTCCAACCTCAACCA-CTTCAATCCTGCTCTTCTTTCTTC-C---GT-TTCCCAGCATGTCTTATAGCCAACATCACCCTCACCATG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111536678 157 - 190429646 TACCTTCTTAGACCTGGTGATTT---GGGTTTCTAGCC-----CTAGAAGGGC--TCAACCC-TTTGTCCCAACTAATTTTCCGTCGCTCCAACCTCAACCA-CTTCAATTCTGCCTGTCTTTCTTC-C---GT-TTCCCAGCATGGCTTATAGCCAACATCACCCTCACCATG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110704817 157 - 189454096 TACCTTCTTAGACCTGGTGATTT---GGGTTTCTAGCC-----CTAGAAGGGC--TCAACCC-TTTGTCCCAACTAATTTCCCGTCGCTCCAACCTCAACCA-CTTCAATTCTGCCTGTCTTTCTTC-C---GT-TTCCCAGCATGGCTTATAGCCAACATCACCCTCACCATG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13272857 157 + 26754465 TACCTTCTTAGACCTGGTGATTT---GGGTTTCTAGCC-----CTAGAAGGGC--TCAACCC-TTTGTCCCAACTAATTTCCCGTCGCTCCAACCTCAACCA-CTTCAATTCTGCCTGTCTTTCTTC-C---GT-TTCCCAGCATGGCTTATAGCCAACATCACCCTCACCATG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4174149 157 - 5137665 TACCTTCTTAGACCTGGTGATTT---GGGTTTCTAGCC-----CTAGAAGGGC--TCAACCC-TTTGTCCCAACTAATTTCCCGTCGCTCCAACCTCAACCA-CTTCAATCCTGCCTGTCTTTCTTC-C---GT-TTCCCAGCATGGCTTATAGCCAACATCACCCTCACCATG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122888995 157 - 135778131 TACCTTCTTAGACCTGGTGATTT---GGGTTTCTAGCC-----CTAGAAGGGC--TCAACCC-TTTGTCCCAACTAATTTCCCGTCGCTCCAACCTCAACCA-CTTCAATCCTGCCTGTCTTTCTTC-C---AT-TTCCCAGCATGGCTTATAGCCAACATCACCCTCACCATG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1990830 157 + 2427316 TACCTTCTTAGACCTGGTGATTT---GGGTTTCTAGCC-----CTAGAAGGGC--TCAACCC-TTTGTCCCAACTAATTTCCCGTCGCTCCAACCTCAACCA-CTTCAATCCTGCCTGTCTTTCTTC-C---GT-TTCCCAGCATGGCTTATAGCCAACATCACCCTCACCATG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1284382 157 + 1448899 TACCTTCTTAGACCTGGTGATTT---GGGTTTCTAGCC-----CTAGAAGGGC--TCAACCC-TTTGTCCCAACTAATTTCCCGTCACTCCAACCTCAACCA-TTTCAATCCTGCCCATCTTTCTTC-C---AT-TTCCCAGCATGGCTTATAACCAACATCACCCTCACCATG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53009913 156 - 190850796 TACCTTCTTAGACCTGGTGATTT---GGGATTCTATCC-----CTAAAAGGGC--TCGAACATTTTCTCCCAATTAATTGCCTATGGCTCCAACCTCAACCA-CTTCAATCCTGCCCTTCTT--TTC-T---GT-TTCCCAGCATGTCTTACATCCAACATCACCCTTACCGTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8170326 155 - 15139346 TACCTTCTTAGACCTGGTGATTT---GGGCTTCTATCC-----CTAAAAGGGC--TCAGCCATTTTCTCCC-ATTAATTGCCTGTTGCTCCAACCTCAGCCA-CTTCAATCCTGCCCTTCTT--TTC-T---GT-TTCCCAGCATGTCTTACATCCAACATCACCCTTACTGTG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6954022 156 - 7304997 TGCCTTCTTAGACCTGGTGATTT---GGGCTTCTATCC-----CTAAAAGGGC--TCAGCCATTTTCTCTCAATTAATTGCCTGTTGCTCCAACCTCAACCA-CTTCAATCCTGCCCTTCTT--TTC-T---GT-TTCCCAGCATGTCTTACATCCAACATCACCCTTACTGTG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9372069 157 - 11631747 TACCTTCTTAGATCTGGTGATTT---GGGCTTCTATCC-----CTAAAAGGGC--TCAACCATTTTCTCCCAATTAATTGCCTATTGCTCCAACCTCAACCA-CTTCAATCCTGCCTTTCTT--TTCTT---AC-ATCCAAGCATGTCTTACATCCAACATCACCCTTACTGTG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1777466 162 + 3286835 TGCCTTCTTAGACCTGGT-ATTT---GGACTTCCAGCCCCTCTCTGGAAGGGG--TCAACCCTTTTGTCTCAATTAATTTCTTCTTGCTCCAACTCCAGCCT-CTTCAATCTCACCCCTCTTCCTTC-C---AC-TTCCCAGCATGTCTTGTAGTCAAGGTCACCCTCACCATG i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1865867 163 + 4188776 TGCCTTCTTAGACCTGATAATTT---GGACTTCTAGCCCCTCTCTGGAAGGGG--TCAACCCTTTTGTCCCAATTCATTTCCTCTTGCTCCAACCCCAGCCT-CTTCAATCCTGCCCTTTTTCCTTC-C---AC-TTCCCAGCATGTCTTACAGCCAGGGTCACCCTCACCATG i proCoq1.NW_012140747v1 C 0 C 0 s canFam3.chr13 47976765 150 + 63241923 TGCCTTTGTAGACCTGGTAATTTCTAGTGTCTTT---------CTAGAAGGTTTGTCAACACTTTTGTCCCAATTAATTTCTC-TGGTCCCAACCTCCACCA-C---------ACCTTTCTTTTTTA-C---ATAGTACCAGTATGTCTTACAGCCAAGGTCACCCTGACAATG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4090741 165 - 5279953 TACCTTCTTAAATCT-ATCATTT---GGACTTCTAGCCCTTCTTTGGAGGGGA--TCAACCCTTTTGTCCTGATTCATTTCCCCTAGCCTCAACTCTAGTCAGCCTCAATCCCACCT-TCTTTCTTC-CTGGAT-CTCCCAGCATTTCTTATAGCTAGGACCACTCTGACCATA i dasNov3.JH568349 I 1053 C 0 e mm10.chr5 76407579 1026 + 151834684 I e otoGar3.GL873602 8603662 333 + 8790067 I a score=146477.000000 s hg38.chr4_KI270787v1_alt 50792 13 + 111943 ATACTCCTTATAC-- s panTro5.chr4 119615486 13 - 194502333 ATACTCCTTATAC-- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121028896 13 - 195804263 ATACTCCTTATAC-- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4460166 13 - 17550833 ATACTCCTTATAC-- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69333060 13 - 118206036 ATACTCCTTATAC-- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111536835 13 - 190429646 ACACTCCTTTTAC-- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110704974 13 - 189454096 ACACTCCTTTTAC-- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13273014 13 + 26754465 ACACTCCTTTTAC-- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4174306 13 - 5137665 ACACTCCTTTTAC-- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122889152 13 - 135778131 ACACTCCTTTTAC-- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1990987 13 + 2427316 ACACTCCTTTTAC-- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1284539 13 + 1448899 ACACTCCTTTTAC-- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53010069 13 - 190850796 ACATTCCTCTTAC-- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8170481 13 - 15139346 ACACTCCTTTTAC-- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6954178 13 - 7304997 ACATTCCTTTTAC-- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9372226 13 - 11631747 ACACTCCTTTTAC-- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1777628 2 + 3286835 -----------AC-- i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1866030 13 + 4188776 ACACTTCTTTTAC-- i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8603995 13 + 8790067 ACACTTTTTTTAC-- i otoGar3.GL873602 I 333 C 0 s canFam3.chr13 47976915 13 + 63241923 ACACTTGTCAAAC-- i canFam3.chr13 C 0 I 16522 s dasNov3.JH568349 4090906 10 - 5279953 -----ACATCTACAC i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76407579 1026 + 151834684 I a score=3734579.000000 s hg38.chr4_KI270787v1_alt 50805 273 + 111943 ACAGAAAG----ACTTCCCTAAGATTCTGTTACTAACCTTGCAGGGAACTAGCCTCACCTTCCC-GCCCCTTGGATCCGTCCCCTTGGACAGTATGGCTGGCCCATATCAGAATGGAGTTTTCCACACTCCATGGACATGGTGATTTTAATCTCTGGGCCTTCCTGAGAGGGCACCAGCTTTTTATATTCATTAGTTTCTTTTGGCCCTTGCTGGTAACTTCC-TTTTTGCTGGATGGCCTATGA-----TCAGCCTATTTATGGTAATTCTAACACTTCAAAA s panTro5.chr4 119615499 273 - 194502333 ACAGAAAG----ACTTCCCTAAGATTCTGTTACTAATCTTGCAGGGAACTAGCCTCACCTTCCC-GCCCCTTGGATCCGTCCCCTTGGACAGTATGGCTGGCCCATATCAGAATGGAGTTTTCCACATTCCATGGACATGGTGATTTTAATCTCTGGGCCTTCCTGGGAGGGCACCAGCTTTTTATATTCATTAGTTTCTTTTGGCCCTTGCTGGTAACTTCC-TTTTTGCTGGATGGCCTATGA-----TCAGCCTATTTATGGTAATTCTAACACTTCAAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121028909 273 - 195804263 ACAGAAAG----ACTTCCCTAAGATTCTGTTACTAATCTTGCAGGGAACTAGCCTCACCTTCCC-GCCCCTTGGATCCGTCCCCTTGGACAGTATGGCTGGCCCATATCAGAATGGAGTTTTCCACACTCCATGGACATGGTGATTTTAATCTCTGGGCCTTCCTGGGAGGGCACCAGCTTTTTATATTCATTAGTTTCTTTTGGCCCTTGCTGGTAACTTCC-TTTTTGCTGGATGGCCTATGA-----TCAGCCTATTTATGGTAATTCTAACACTTCAAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4460179 272 - 17550833 ACAGAAAG----ACTTCCCTAAGATTCTGTTACTAACCTTGCAGGGAACTA-CCTCACCTTCCC-GCCCCTTGGATCCATCCCCTTGGACAGTATGGCTGGCCCATATCAGAATGGAGTTTTCCACACTCCATGGACATGGTGATTTTAATCTCTGGGCCTTCCTGAGAGGGCACCAGCTTTTTATATTCATTAGTTTCTTTTGGCCCTTGCTGGTAACTTCC-TTTTTGCTGGATGGCCTATGA-----TCAGCCTATTTATGGTAATTCTAACACTTCAAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69333073 273 - 118206036 ACAGAAAG----ACTTCCCTAAGATTCTGTTACTAACCTTGCAGGGAACTAGCCTCACCTTCCC-GCCCCTTGGATCCATCCTCTTGAACAGTATGGCTGGCCCATATCAGAATGGAGTTTTCCACACTCCGTGGACATGGTGATTTTAATCTCCGGGCCTTCCTGAGAGGGCACCAGCTTTTTATATTCATTAGCTTCTTTTGGCCTTTGCTGGTAACTTCC-TTTTTGCTGGATGGCCTATGA-----TCAGCCTATTTATGGTAATTCTAACACTTCAAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111536848 278 - 190429646 ACAGAAAG----ACTTTCCTAAGATTCTGTTACTAACCTTGCAGAGAACTAGCCTCACCTTCCT-GCCCCTTGGATCTGTCCCCTTGGACAGTATGGCTGGCCCATATCAGAATGTAGTTTTCCACATTCCATGGACATGGTGATTTTAATCTCTGGGCCTTCCTGAGAGGGCACCAGCTTTTTATATTCATTAGTTTCTTTTGACCTTTGCTGGTAACTTCC-TTTTTGCTGGATGGCCTATGATGTAACAAGCCTATGTATGGTAATTCTAACACTTAAAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110704987 278 - 189454096 ACAGAAAG----ACTTTCCTAAGATTCTGTTACTAACCTTGCAGAGAACTAGCCTCACCTTCCT-GCCCCTTGGATCTGTCCCCTTGGACAGTATGGCTGGCCCATATCAGAATGTAGTTTTCCACATTCCATGGACATGGTGATTTTAATCTCTGGGCCTTCCTGAGAGGGCACCAGCTTTTTATATTCATTAGTTTCTTTTGACCTTTGCTGGTAACTTCC-TTTTTGCTGGATGGCCTATGATGTAACAAGCCTATGTATGGGAATTCTAACACTTCAAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13273027 278 + 26754465 ACAGAAAG----ACTTTCCTAAGATTCTGTTACTAACCTTGCAGAGAACTAGCCTCACCTTCCT-GCCCCTTGGATCTGTCCCCTTGGACAGTATGGCTGGCCCATATCAGAATGGAGTTTTCCACATTCCATGGACATGGTGATTTTAATCTCTGGGCCTTCCTGAGAGGGCACCAGCTTTTTCTATTCATTAGTTTCTTTTGACCTTTGCTGGTAACTTCC-TTTTTGCTGGATGGCCTATGATGTAACAAGCCTACGTATGGTAATTCTAACACTTCAAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4174319 254 - 5137665 ACAGAAAG----ACTTTCCTAAGATTCTGTTACTAACCTTGCAGAGAACTAGCCTCACCTTCCT-GCCCCTTGGATCTGTCCCCTTGGACAGTATGGCTGGCCCATATCAGAATGGAGTTTTCCACATTCCATGGACATGGTGATTTTAATCTCTGGGCTTTCCTGAGAGGGCACCAGCTTTTTATATTCATTAGTTTCTTTTGACCTTTGCTGGTAACTTCC-TT------------------------CAAGCCTATGTATGGTAATTCTAACACTTCAAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122889165 254 - 135778131 ACAGAAAG----ACTTTCCTAAGATTCTGTTACTAACCTTGCAGAGAACTAGCCTCACCTTCCT-GCCCCTTGGATCTGTCCCCTTGGACAGTATGGCTGGCCCATATCAGAATGGAGTTTTCCACATTCCATGGACAAGGTGATTTTAATCTCTCAGCCTTCCTGAGAGGGCACCAGCTTTTTATATTCATTAGTTTCTTTTGACCTTTGCTGGTAACTTCC-TT------------------------CAAGCCTATGTATGGTAATTCTAACACTTCAAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1991000 254 + 2427316 ACAGAAAG----ACTTTCCTAAGATTCTGTTACTAACCTTGCAGAGAACTAGCCTCACCTTCCT-GCCCCTTGGATCTGTCCCCTTGGACAGTATGGCTGGCCCATATCAGAATGGAGTTTTCCACATTCCATGGACATGGTGATTTTAATCTCTGGGCTTTCCTGAGAGGGCGCCAGCTTTTTATATTCATTAGTTTCTTTTGACCTTTGCTGGTAACTTCC-TT------------------------CAAGCCTATGTATGGTAATTCTAACACTTCAAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1284552 278 + 1448899 ACAGAAAG----ACTTTCCTAAGATTCTGTTACTAACCTTGCAGAGAACTAGCCTCACCTTCCT-GCCCCTTGGATCTGTCCCCTTGGACAGTATGGCTGGCCCATATCAGAATGGAGTTTTCCACATTCCATGGACCTGGTGATTTTAATCTCTGGGCCTTCCTGAGTGGGCACCAGCTTTTTATATTCATTAGTTTCTTTTGACCTTTGCTGGTAACTTCC-TTTTTGCTGGATGGCTTATGATGTAACAAGCCTATGTATGGTAATTCTAACACTTCAAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53010082 278 - 190850796 ACAGGAAG----ATTTCCCTAAGATTCTGTTACTAATCTTGTAGGGAACTAGCCTCACCTTCCT-GCCCCTTGGATCTGTCCCCTTGGACAATGTGGCTGGCCCATATCAGAATGGAGTTTTCCACCCTTCATGGACATGGTGATTTTAATCTCTGGGCCTTGCTGAGAGGGCACCAGCTTTTTATATTCATTAGTTTATTTTGGCCTCTGCTGGTAACTTCC-TTTTTGCTGGATAGCCTATGATGTAACCAGCCTATTTATGGTAATTCTAACACTTCAAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8170494 279 - 15139346 ACAGGAAG----ATTTCCCTAAGATTCTGTTACTAATCTTGTAGGGAACTAGCCTCAACTTCCT-GCCCCTTGGATCTGTCACCTTGGACAGTGTGGCTGGCCCATATCCGAATGGAGTTTTCTATACTCCATGGACACGGTGATATTAATCTCTGGGCCTTCATGAGAGGGCACCAGCTTTTTATATTTATTAGCTTATTTTGGCCTTTGCTGGTAACTTCCTTTTTTGCTGGATAGCCTATGCTGTAACCAGCCTATTTATGGTAATTCCAACACTTCAAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6954191 278 - 7304997 AAAGGAAG----ATTTCCCTAACATTCTGTTACTAATCTTGTAGGGAACTAGCCTCACCTTCCT-GCCGCTTGGATCTGTCCCCTTGGACAGTGTGGCTGGCCTACATCCGAATGGAGTTTTCCACACTCCATGGACATGGTGATTTTAATCTCTGGGCCTTCCTGAGAGGGCACCAGCTTTTGATATTCATTAGCTTATTTTGGCCTTTGCTGGTAACTTCC-TTTTTGCTGGATAGCCTATGCTGTAACCAGCCTATTTATGGTAATTCTAACACTACAAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9372239 278 - 11631747 ACAGGAAG----ATTTCCCTAAGATTCTGTTACTAATCTTGTAGGGAACTAGCCTCACCTTCCT-GCCCCTTGGATCTGCCCCCTTGGACAGTGTGGCTGGCCCATATCAGAATGAAGCTTTCTACCCTCCATGGACATGGTGATTTTAATCTCTAGGCCTTACTGAGAGGGCACCAGCTTTTTATATTCATTAGTTTATTTTGGTCTTTGCTGGTAACTTCC-TTTTTGCCGGATAGCCTATGCTGTAACCAGCCTATTTATGATAATTCTAACACTTCAAAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1777630 278 + 3286835 ACAGAAGG----ACTTCCCTGAGATTCTATTACTGGCCTTGCAGAGAACCATGCCTACCTTCCA-GCCCCTTGGATCAGTCCCCTTGGATATTACTGCAGGCCCATATCAGAATGGAGTTTTCCACACTCCATGGACATGATGATTTTAATCTCTAGGCCTTCCTGAGAAGGATCCTGCTTTTAATATTCATTAGTTTCTTTTGAGCCTTGTTGGCAAATTCC-TCTTCGCTGGACAGCCCATGATGTAATCAGTCTATTTATGATAATTCTAGCACTTTAAAA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1866043 264 + 4188776 ACAGAAGG----ACTTCCCTTAGATTCTATTACTGGCCTTGCAGAGAACCATCCCCACCTTCCA-G--------------CCCCTTGGACAGTACTCCAGGTCCATATCAGAATGGAGTTTTCCACACTCCATGGACATGATGATTTTAATCTCTGGGCCTACCTGAGAAGGTTCCTGCTTTTAATATTCATTAGTTTCTTTTGACCCTTGTTGGCAACTTCC-TCTTTGCTGGACAGCCTGTGATGTAATCAGTCTATTTATGATAATTCTAGCACTTTAAAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8604008 276 + 8790067 ACAGAAGG----ACTTCCTGAAGATTCTATCACTGCCCTTGCAGCGAACCA-CCCCACCTTCCA-GTCCCTGCTTCAGAGCTCCTTGGATGGCATTGCAGACCCATGTGAGGACAGAGTTTTCCACACTCCATGGGCCTGATGATTTCAATCTCTGGGCCTTCCTGAGAAGGCTTTAGCTTTTAATATTCATTAGTTTCTTTTGAA-CTTGTTGGCAACTTTG-TTTGTCCTGGACAGCCTATGATGTAATCGGTCTATTTATGATAATCCTGGCACTATAAAA i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4090916 259 - 5279953 GCAGAGAACCATCCTTACCTAAGAGTTT--------------------CTATTCCTACCTGCCTAGCCACTTAGATTGGTCCCCTCAGACTATACTG--AGCCCACACCAAAATGGAATTTTCCATGCTCCATGGACATGGTGATTTTAATCTTTGGGCCTTTCAAAGAGGGCTCCAGTTCTTTATACCCAGGAGTTTCTTT--GCCCTTGCTGGCAACTTCT-GCTTTGCTGGACAACCTCTGATGAAACCAGTCTATTTATGATATTTATAGCACTGAAAAG i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76407579 1026 + 151834684 I e canFam3.chr13 47976928 16522 + 63241923 I a score=1187631.000000 s hg38.chr4_KI270787v1_alt 51078 81 + 111943 CAATATAGAAATACAGTCTCTAC-------------------------------------------CATAGTGTTATGCATATACCTATATCCTCTAATAATTTTTCCTAGGGGTGTAATGTTT s panTro5.chr4 119615772 81 - 194502333 CAATATAAAAATACAGTCTCTAC-------------------------------------------CATAGTGTTATGCATATACCTATATCCTCTAATAATTTTTCCTAGGGGTGTAATGTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121029182 81 - 195804263 CAATATAGAAATACAGTCTCTAC-------------------------------------------CATAGTGTTATGCATATACCTATATCCTCTAATAATTTTTCCTAGGGGTGTAATGTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4460451 81 - 17550833 CAATATAGAAATACAGTCTCTAC-------------------------------------------CATAGTGTTATGCATATACCTATATCCTCTAATAATTTTTCCTAGGGGTGTAATGTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69333346 80 - 118206036 CAATATAGAAATACAGTCTCTAC-------------------------------------------CATAGTGTTATGCATATACCTATATCCTCTAATAATTTTTCCTA-GAGTGTAATGTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111537126 81 - 190429646 CAATATAGAAATACAGTCTCTAC-------------------------------------------CATAATGTTATGCATATACCTATATCCTCTAATAATTTTTCCCAGGGGTGTCATGTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110705265 81 - 189454096 CAATATAGAAATACAGTCTCTAC-------------------------------------------CATAATGTTATGCATATACCTATATCCTCTAATAATTTTTCCCAGGGGTGTCATGTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13273305 81 + 26754465 CAATATAGAAATACAGTCTCTAC-------------------------------------------CATAATGTTATGCATATACGTATATCCTCTAATAATTTTTCCCAGGGGTGTCATGTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4174573 81 - 5137665 CAATATAGAAATACAGTCTCTAC-------------------------------------------CATAATGTTGTGCATATACCTATATCCTCTAATAATTTTTCCCAGGGGTGTCATGTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122889419 81 - 135778131 CAATATAGAAATACAGTCTCTAC-------------------------------------------CATAATGTTATGCATATACCTATATCCTCTAATAATTTTTCCTAGGGGTGTCATGTTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1991254 81 + 2427316 CAATATAGAAATACAGTCTCTAC-------------------------------------------CATAATGTTATGCATATACCTATATCCTCTAATAATTTTTCCCAGGGGTGTCATGTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1284830 81 + 1448899 CAATATAGAAATACAGTCTCTAC-------------------------------------------CATAATGTTATGCATATACCTATATCCTCTAATAATTTTTCCTAGGGGTGTCATGTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53010360 81 - 190850796 CAATATATAAATAGAGTCTCTAT-------------------------------------------CATACTGTTATGCATATACCTATATCCTCCAATAATTTTTCCTAGTGGTGTAATGTTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8170773 124 - 15139346 CAATATATAAATACAGTCTCTACATACTGTTACACACTTCAAAACAATATATAAATACAGTCTCTACATACTGTTATGCATATACCTATATCCTCTAATAATTTTTCCTAGTGGTGTAATGTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6954469 81 - 7304997 CAATATATAAATACAGTCTCTAT-------------------------------------------CATACTGTTACGCATGTACCTATATCCTCTAATAATGTTTCCTAGTGGTGTAATGTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9372517 81 - 11631747 CAGTATATAAATACAGTCTCTAT-------------------------------------------CATACTGTTATGCATATACCTATATCCTCTAACAATTTTTCCTAGTGGTGTAATGTTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1777908 81 + 3286835 CAATATATAAGTAGAGTCTCTAC-------------------------------------------CATACTATTATACATATGCTCATGTTCCCTAATAATTTTTCCTAGTTGTGTAGTATAT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1866307 81 + 4188776 CAATATATAAATAGAGTCTCTAC-------------------------------------------CATACTGTCATGCGTATGCCTATATTCTCTAACAATTTTTTCTAGTTGTGTAGTATAT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8604284 79 + 8790067 CAATATATAAAT--AGTCTCTGC-------------------------------------------CACAGTGTCCTGCATATGTCTATATTCCCTAATAATTTTTCTTAGTTGTGTACTGCAT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47993450 81 + 63241923 CAGTATGTAAATAAATGCTCTAC-------------------------------------------CACATTCTCAAGCATTTGCCTATATTCCCAAATAATTTTTCCTAGTTGTCTAATGTAT i canFam3.chr13 I 16522 C 0 s dasNov3.JH568349 4091175 80 - 5279953 CAATATGTAAACATAATCTCTAC-------------------------------------------CACACCATCATGCATATACCTATATTCTTTAATAAT-TTTCTTAGTTGTCTAAGGTAT i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76407579 1026 + 151834684 I a score=3479249.000000 s hg38.chr4_KI270787v1_alt 51159 253 + 111943 ACAAGATTTGTCTCTTCCATTTAACTACAGACCTAGTAA-TTAT-----TAAAACCACTTAT-------TTAGC--ACC--TTTATTTATGCAAGCCATTTTATAAACAT----ATATAA----------------------------------------------------------------------------TACAGTAA--ATATTTT-AAATTTTCGTTGTATTTCTTTTCTCCTTGAGAATAGAGTCCAACCCCTCAACTTGTTTCTTATCCTTCCTTATTTCCCACAGAACTAAAATGCAAAGACACAAAGTAGGCAGTCAGT-AACTGATTAC-AACATTAGTTAA s panTro5.chr4 119615853 253 - 194502333 ACAAGATTTGTCTCTTCCATTTAACCACAGATCTAGTAA-TTAT-----TAAAACCACTTAT-------TTAGC--ACC--TTTATTTATGCAAGCCATTTTATAAACAT----ATATAA----------------------------------------------------------------------------TACAGTAA--ATATTTT-AAATTTTCATTGTATTTCTTTTctccttgagaatagagtccaacccctcaacttgtttcttatccttccttatttcccacagaactaaaatgcaaagacacaaagtaggcagtcagt-aaCTGATTAC-AACATTAGTTAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121029263 253 - 195804263 ACAAGATTTGTCTCTTCCATTTAACCACAGATCTAGTAA-TTAT-----TAAAACCACTTAT-------TTAGC--ACC--TTTATTTATGCAAGCCATTTTATAAACAT----ATATAA----------------------------------------------------------------------------TACAGTAA--ATATTTT-AAATTTTCGTTGTATTTCTTTTctccttgagaatagagtccaacccctcaacttgtttcttatccttccttatttcccacagaactaaaatgcaaagacacaaagtaggcagtcagt-aaCTGATTAC-AACATTAGTTAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4460532 253 - 17550833 ACAAGATTTGTCTCTTCCATTTAACCACAGACCTAGTAA-TTAT-----TAAAACCACTTAT-------TTAGC--ACC--TTTATTTATGCAAGCCATTTTATAAACAT----ATATAA----------------------------------------------------------------------------TACAGTAA--ATATTTT-AAATTTTCATTGTATTTCTTTTCTCCTTGAGAATAGAGTACAACCCCTCAACTTGTTTCTTATCCTTCCTTATTTCCCACAGAACTAAAATGCAAAGACACAAAGTAGGCAATCAGT-AACTGATTAC-AACATTAGTTAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69333426 252 - 118206036 AC-AGATTTGTCTCTTCCATTTAATCACAGACTTAGTAAGTGAT-----TAAAACCACTTAT-------TTAGC--ACC--TTTATTTATGCAAGCCATTTTATAAACAT----ATATAA----------------------------------------------------------------------------TACAGTAA--ATATTTT-AAATGTTCATTGTATTTC-TTTCTCCTTGAGAATAGAGTCCAACCCCTCAACTTGTTTCTTATCCTTCCTTATTTCCCACAGAACTAAAATGCAAAGACACAAAGTTGGCAATCAAT-AACTGATTAC-AACATTAGTTAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111537207 253 - 190429646 ACAAGATTTGTCTCTTCCATTTAACCACAGACCTAGTAG-TTAT-----TAAAACCACTTAT-------TTAGC--ACC--TTTATTTATGCAAACCATTTTATAAACAT----ATATAA----------------------------------------------------------------------------TATAGTAA--ATATTTT-AAATTATCATTGTATTTCTTTTctccttgagaatagagtccaacccctcaacttgtttcttatctttccttatttcccacagaactaaaatgcgaagacacaaagtaggcaatcaat-aaCTGATTAC-AACTTTAGTTAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110705346 253 - 189454096 ACAAGATTTGTCTCTTCCATTTAACCACAGACCTAGTAG-TTAT-----TAAAACCACTTAT-------TTAGC--ACC--TTTATTTATGCAAACCATTTTATAAACAT----ATATAA----------------------------------------------------------------------------TATAGTAA--ATATTTT-AAATTATCATTGTATTTCTTTTCTCCTTGAGAATAGAGTCCAACCCCTCAACTTGTTTCTTATCTTTCCTTATTTCCCACAGAACTAAAATGCGAAGACACAAAGTAGGCAATCAAT-AACTGATTAC-AACTTTAGTTAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13273386 253 + 26754465 ACAAGATTTGTCTCTTCCATTTAACCACAGACCTAGTAG-TTAT-----TAAAACCACTTAT-------TTAGC--ACC--TTTATTTATGCAAACCATTTTATAAACAT----ATATAA----------------------------------------------------------------------------TATAGTAA--ATATTTT-AAATTATCATTGTATTTCTTTTctccttgagaatagagtccaacccctcaacttgtttcttatctttccttatttcccacagaactaaaatgcgaagacacaaagtaggcaatcaat-aaCTGATTAC-AACTTTAGTTAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4174654 253 - 5137665 ACAAGATTTGTCTCTTCCATTTAACCACAGACCTAGTAG-TTAT-----TAAAACCACTTAT-------TTAGC--ACC--TTTATTTATGCAAACCATTTTATAAACAT----ATATAA----------------------------------------------------------------------------TATAGTAA--ATATTTT-AAATTATCATTGTATTTCTTTTctccttgagaatagagtccaacccctcaacttgtttcttatccttccttatttcccacagaactaaaatgcgaagacacaaagtaggcaatcaat-aaCTGACTAC-AACTTTAGTTAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122889500 253 - 135778131 ACAAGATTTGTCTCTTCCATTTAACCACAGACCTAGTAG-TTAT-----TAAAACCACTTAT-------TTAGC--ACC--TTTATTTATGCAAACCATTTTATAAACAT----ATATAA----------------------------------------------------------------------------TACAGTAA--ATATTTT-AAATTTTCATTGTATTTCTTTTTTCCTTGAGAATAGAATCCAACCCCTCAACTTGTTTCTTATCCTTCCTTATTTCCCACAGAACTAAAATGCGAAGACACAAAGTAGGCAATCAAT-AACTGATTAC-AACTTTAGTTAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1991335 253 + 2427316 ACAAGATTTGTCTCTTCCATTTAACCACAGACCTAGTAG-TTAT-----TAAAACCACTTAT-------TTAGC--ACT--TTTATTTATGCAAACCATTTTATAAACAT----ATATAA----------------------------------------------------------------------------TATAGTAA--ATATTTT-AAATTATCATTGTATTTCTTTTctccttgagaatagagtccaacccctcaacttgtttcttatccttccttatttcccacagaactaaaatgcaaagacacaaagtaggcaatcaat-aaCTGATTAC-AACTTTAGTTAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1284911 253 + 1448899 ACAAGATTTGTCTCTTCCATTTAACCACAGACCTAGTAG-TTAT-----TAAAACCACTTAT-------TTAGC--ACC--TTTATTTATGCAAACCATTTTATAAACAT----ATATAA----------------------------------------------------------------------------TACAGTAA--ATATTTT-AAATTTTCATTGTATTTCTTTTctccttgagaatagagtccaacccctcaacttgtttcttatccttccttatttcccacagaactaaaatgtgaagacacaaagtaggcaatcaat-aaCTGATTAC-AACTTTAGTTAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53010441 253 - 190850796 ACAAGATTTGTCTCTTCCATTTAACCATAGACCTAGTAA-TTAT-----AATAACCACTAAT-------TTAGC--ATC--TTTATTTATGTAAGCtattttataaacat----atataa----------------------------------------------------------------------------tacagtta--atatttt-taattttCATTGTATTTCTTTTCTCCTTGAGAATAGAGTCCAAACCCTCAACTTGTTTCTTATCCTTCCTTATTTCCCACAGCATTAAAATGCAAAGACACAAAGTAGGCAATCAAT-AACTGATTAC-AACATTAGTTTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8170897 252 - 15139346 ACAAGATTTGTCTCTTTCATTTAACCACAGACCTAGTAA-TTAT-----AATAACCACTTAT-------TTAAC--ATC--TTTATTTATGTAAGCCATTTTATAAACAT----ATATAA----------------------------------------------------------------------------TACAGTAA--ATATTTT-TAATTTTCATTGTATTTCTTTTCTCCTTGAGAACAGAGTCCAAAGCCTCAACCTGTTTCTTATCCTTCCTTATTTCCCACAGCACTAAAATGCAAAGACACAAAGTA-GCAATCAAT-AACTGATTAC-AATAGTAGTTTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6954550 253 - 7304997 ACAAGATTTGTCTCTTCCATTTAACCACAGACCTAGTAA-TTAT-----AATAACCACTTAT-------TTAGC--ATC--TTTATTAACAGAAGCCATTTTATAAACAT----ATATAA----------------------------------------------------------------------------TACAGTAA--ATATTTT-TAATTTTCATTGTATTTCTTTTctccttgagaacagagtccaaaccctcaacttgtttcttatccttccttatttcccacagcactaaaatgcaaagacacaaagtaggcaataaat-aACTGATTAC-AACAATAATTTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9372598 252 - 11631747 ACAAGATTGGTCTCTTCCATTTAACCACAGACCTAGTAA-TTAT-----AATAACCACTTAT-------TTAGC--ATC--TTTATTTATGTAAGCCA-TTTATAAACAT----ATACAA----------------------------------------------------------------------------TACAGTAA--ATATTTT-TAATTTTAATTGTATTTCTTTTctccttgagaatagagtccaaaccctcaacttgtttcttatccttccttatttcccacagcactaaaatgcaaagacacaaagtaggcaatcaat-aaCTGATTAC-AACATTAGTTTA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1777989 237 + 3286835 ATAAGACCTGTCTCTCTAGTTT---AACAAGCCTAGTAA-TTATAAT--AAAAACTACTTAT-------TTAGT--ACC------TTTATGTATACTATTTTATAAACAC----ATATAA----------------------------------------------------------------------------TATGGTAAGTATATTtt-ttattttctttatatttcttttctcttTAAGAA---------------CAACTTCTTTCTTATCCTTACTTATCCCTGATAGCAATAAAATGCACAGATACAAAATAGGCAACAAAT-AGCTGATTATAAACATTAATTAA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1866388 243 + 4188776 ACAAGATCTGTCTCTCCAGTTTAACAACAAGCCTAGTAA-TTATAAT--AAAAACCACTTAT-------TTAGC--ACT--TTTATTTATGTATGCTATTTTATAAACAC----ATATAA----------------------------------------------------------------------------TACAATAAGCATATTTT-TTATTTTCTTTATATTTCTTTTctccttgagaa---------------caacttctttcttatccttatttatccctgacagtactaaaatgcacagatacaaagtaggcaataaat-agctgattat-aacattaattaa i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8604363 253 + 8790067 ATGACATCTGTTTCTCCAGTTTAACAACAAACCTAGTAA-TTACAATAAAAAAATCACTTAT-------TTAGC--ACC--TTTATTTATACAAGATATTTT------------ATACAA----------------------------------------------------------------------------TACAATAAATACATTTTAAAATTTTCTTTAGATTTCTTTTCTCCTTCAGAATAGAGCCCATAGCTCCAACTTCTTTCTTATTTTTACTCATCCCTAACACCACTAAGATGCACAGATTCAAATAAGGTGATAAAA-TGCTGATTAC-AACATTAGgtgg i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76408605 290 + 151834684 ATAAAATTTATCTCTCCACCTTAACCACAAGCCCCATAA-ACGT----------------AT-------TTAAT--ACC--ATTTCATATATAGTCAATTTTCTAAACACAAAAATATAATTAGATGTAATGTTTGTATGAAAATTATATATTATGTATAAATGCACATCATATTTATGTGAAACAATAATTTAACTATAGTAAACACATTTA-TACCTTTTATTA---TTCCTTTCTTCCTGAGGACAGGCTCTGCATCCTCAGCTCTTCC----TCTTTACTTAACT-TCACAGGCCTCAGATGGACAGATACATTGTAGGCAGT---------------------------- i mm10.chr5 I 1026 C 0 s canFam3.chr13 47993531 258 + 63241923 ACAAGGTTTGACTTTTCAGTTTAA--------CTAGTAA-TTATAAT--AATAATCACATATAATAATAATAGCTTACC--TGTATTTATCCAATCCATTTTGTAAATAC----ATTTAA----------------------------------------------------------------------------CACAACaaatatattta-aatttttctttatagttattttttCC-TGAGAATAGATTCCATATCCTCAATTTGTTTCTTATTTTCAGTTATTCCTCACTGCATTAGAATGCACAGATACACAATCAGCAACCAAT-AATCCATTAC-AGTATTAGTTAA i canFam3.chr13 C 0 I 209 s dasNov3.JH568349 4091255 209 - 5279953 ACATGATTTGTCTCT-CCATATAACCAAAAACCTATTAA-TTAT--------AACTATTTAC-------TTATC--ACTTATTTGTTTATGCAAACCATTCTAT----------ATACA-----------------------------------------------------------------------------TACAATAA--AT-TTTT-AAATTTTC------TTTATTTCCCCCATCATAATTG------------CTATTTCTTTCTTAAACTGACTTATTCCTCACAGGACTAGAGT-----------------GCAATAAATAAATTGATTAT-AACAACCAGTAA i dasNov3.JH568349 C 0 C 0 a score=10978.000000 s hg38.chr4_KI270787v1_alt 51412 1 + 111943 T s panTro5.chr4 119616106 1 - 194502333 T i panTro5.chr4 C 0 C 0 s panPan2.chr4 121029516 1 - 195804263 T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4460785 1 - 17550833 T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69333678 1 - 118206036 T i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111537460 1 - 190429646 T i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110705599 1 - 189454096 T i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13273639 1 + 26754465 T i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4174907 1 - 5137665 T i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122889753 1 - 135778131 T i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1991588 1 + 2427316 T i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1285164 1 + 1448899 T i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53010694 1 - 190850796 T i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8171149 1 - 15139346 T i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6954803 1 - 7304997 T i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9372850 1 - 11631747 T i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1778226 1 + 3286835 A i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1866631 1 + 4188776 A i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8604616 1 + 8790067 t i otoGar3.GL873602 C 0 I 484 s canFam3.chr13 47993998 1 + 63241923 T i canFam3.chr13 I 209 C 0 s dasNov3.JH568349 4091464 1 - 5279953 T i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76408895 0 + 151834684 C a score=357720.000000 s hg38.chr4_KI270787v1_alt 51413 25 + 111943 -AAAATAAATGAGGCATGTAAGGTAT s panTro5.chr4 119616107 25 - 194502333 -AAAATAAATGAGGCATGTAAGGTAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121029517 25 - 195804263 -AAAATAAATGAGGCATGTAAGGTAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4460786 25 - 17550833 -AAAATAAATGAGGCATGTAAGGTAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69333679 25 - 118206036 -AAAATAAATGAGGCATGTAAGGTAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111537461 25 - 190429646 -AAAATAAATGAGGCATGTAAGGTAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110705600 25 - 189454096 -AAAATAAATGAGGCATGTAAGGTAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13273640 25 + 26754465 -AAAATAAATGAGGCATGTAAGGTAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4174908 25 - 5137665 -AAAATAAATGAGGCATGTAAGGTAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122889754 25 - 135778131 -AAAATAAATGAGGCAAGTAAGGTAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1991589 25 + 2427316 -AAAATAAATGAGGCATGTAAGGTAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1285165 25 + 1448899 -AAAATAAATGAGGCATGTAAGGTAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53010695 25 - 190850796 -AAAATAAATAAGGCATGTAAGGTAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8171150 25 - 15139346 -AAAATAAATGAGGCATGTAAGGTAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6954804 25 - 7304997 -AAAATAAATGAGGCATGTAAGTTAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9372851 25 - 11631747 -AAAATAAATGAGGCGTGTAAGGTAT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1778227 25 + 3286835 -AAAATAAATGAGGGATTTAAGGTAC i micMur3.chrUn_NW_017968520v1 C 0 I 6 s proCoq1.NW_012140747v1 1866632 25 + 4188776 -AAAATAAATGAGGGCTTTAAGGTAC i proCoq1.NW_012140747v1 C 0 I 6 s mm10.chr5 76408895 19 + 151834684 -----TAAATGAAAGACATAGCCC-- i mm10.chr5 C 0 C 0 s canFam3.chr13 47993999 25 + 63241923 -AAAGTAAATGAGGGATTCAAGGTAC i canFam3.chr13 C 0 I 3 s dasNov3.JH568349 4091465 25 - 5279953 ACAAATAAATGAAGGATTTA-GGTAC i dasNov3.JH568349 C 0 I 5 e otoGar3.GL873602 8604617 484 + 8790067 I a score=2412418.000000 s hg38.chr4_KI270787v1_alt 51438 160 + 111943 ACAACT-GAGTGATAGTGAGAACACATAATTAACCTCAAAGACTAGAATGCTTGGAAA-----TCACTTATTAGATGAATGTAATATATCAGGCATGAAATGTCAAAAAGAGAAGAAAG-----------------------------------------GTCTGCATTTTTGG--ACCCCTAGGTCATCCTAGACATTAAAGAGGgcc s panTro5.chr4 119616132 160 - 194502333 ACAACT-GAGTGATAGTGAGAACACATAATTAACCTCAAAGACTAGAATGCTTGGAAA-----TCACTTATTAGATGAATGTAATATATCAGGCATGAAATGTCAAAAAGAGAAGAAAG-----------------------------------------GTCTGCATTTTTGG--ACCCCTAGGTCATCCTAGACATTAAAGAGGgcc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121029542 160 - 195804263 ACAACT-GAGTGATAGTGAGAACACATAATTAACCTCAAAGACTAGAATGCTTGGAAA-----TCACTTATTAGATGAATGTAATATATCAGGCATGAAATGTCAAAAAGAGAAGAAAG-----------------------------------------GTCTGCATTTTTGG--ACCCCTAGGTCATCCTAGACATTAAAGAGGgcc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4460811 160 - 17550833 ACAACT-GAGTGATAGTGAGAACACATAATTAACCTCAAAGACTAGAATGCTTGGAAA-----TCACTTATTAGATGAATGTAATGTATCAGGCACGAAATGTCAAAAAGAGAAGAAAG-----------------------------------------GTCTGCATTTTTGG--ACCCCTAAGTCATCCTAGACATTAAAGAGGgcc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69333704 160 - 118206036 ACAACT-GAGTGATAGTGAGAACACATAATTAACCTCAAAGACTAGAATGCTTGGAAA-----TCACTTATTAGATGAATGTAACATATCAGGCATGAAATGTCAAAAAGAGAAGAAAG-----------------------------------------GTCTGAATTTTTGG--ACCCCCAGGTCATCCTAGACATTAAAGAGGgcc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111537486 159 - 190429646 ACAACT-GAGTGATAGTGGGAACACATAATCAACCTCAAAGACTAGAATGCTTGAAAA-----TCACTTATTAGATGGATGTAATATATCAGGCATGAAATGTCAAAAAGAGAAGAAAG-----------------------------------------GTCTGAATTTTTGG--ACCCCTAGGTCATTCTAGACATTAAA-GGGgcc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110705625 159 - 189454096 ACAACT-GAGTGATAGTGGGAACACATAATCAACCTCAAAGACTAGAATGCTTGAAAA-----TCACTTATTAGATGGATGTAATATATCAGGCATGAAATGTCAAAAAGAGAAGAAAG-----------------------------------------GTCTGAATTTTTGG--ACCCCTAGGTCATTCTAGACATTAAA-GGGgcc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13273665 159 + 26754465 ACAACT-GAGTGATAGTGGGAACACATAATCAACCTCAAAGACTAGAATGCTTGAAAA-----TCACTTATTAGATGGATGTAATATATCAGGCATGAAATGTCAAAAAGAGAAGAAAG-----------------------------------------GTCTGAATTTTTGG--ACCCCTAGGTCATTCTAGACATTAAA-GGGgcc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4174933 160 - 5137665 ACAACT-GAGTGAGAGTGGGAACACATAATCAACCTCAAAGACTAGAATGCTTGAAAA-----TCACTTATTAGATGGATGTAATATATCAGGCATGAAATGTCAAAAAGAGAAGAAAG-----------------------------------------GTCTGCATTTTTGG--ACCCCTAGGTCATTCTAGACATTAAagggggcc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122889779 160 - 135778131 ACAACT-GAGTGAGAGTGGGAACACATAATCAACCTCAAAGACTAGAATGCTTGGAAA-----TCACTTATTAGATGGATGTAATATATCAGGCATGAAATGTCAAAAAGAGAAGAAAA-----------------------------------------GTCTGCATTTTTGG--ACCCCTAGGTCATCCTAGACATTAAAGAGGgcc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1991614 160 + 2427316 ACAACT-GAGTGAGAGTGGGAACACATAACCAACCTCAAAGACTAGAATGCTTGAAAA-----TCACTTATTAGATGGATGTAATATATCAGGCATGAAATGTCAAAAAGAGAAGAAAG-----------------------------------------GTCTGCATTTTTGG--ACCCCTAGGTCATTCTAGACATTAAAGGGGgcc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1285190 160 + 1448899 ACAACT-GAGTGATAGTGGGAACACATAATCAACCTCAAAGACTAGAATGCTTGGAAA-----TCACTTATTAGATGGATGTAATATATCAGGCATGAAATGACCAAAAGAGAAGAAAG-----------------------------------------GTCTGCATTTTTGG--ACCCCTAGGTCATCCTAGACATTAAAGAGGgcc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53010720 152 - 190850796 ACAACT-GAGTGATAGTGAGAAC------TCAACCTCAAAGACTAGAATGCTTGGAAA-----TCAC--ATTAGATGAATGCAATATATCAGGCATGAAATGTCAAAAAGAGAAGAAAG-----------------------------------------GTCTGCATTTTTGG--ACCCATAGGACATCCTAGACATTAAAGAGGgcc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8171175 160 - 15139346 ACAACT-GAGTGATAGTGAGAACTCATAATCAACCTCGAAGACTAGAATGCTTGGAAA-----TCACTTGTTAGATGAATGTAATATATCAGGCATGAAATGTCAAAAAGAGAAGAAAG-----------------------------------------GTCTGCATTTTTGG--ACCTATAGGATATCCTAGGCATTAAAGAGGgcc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6954829 160 - 7304997 ACAACT-GAGTGATGGTGAGAATTCATAATCAACCTCGAAGACTAGAATGCTTGGAAA-----TCACTTGTTAGATGAATGTAATATATCAGGCATGAAATGTCAAAAAGAGAAGAAAG-----------------------------------------GTCTGCATTTTTGG--ACCCACAGGACATCCTAGACATTAAAGAGGgcc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9372876 153 - 11631747 ACAATT-GAGTGATAGTGAGAACTCATAATCAACCTCAAAGACTAGAATGC------------TCACTTGTTAGATGAATGCAATATATCAGGCATGAAATGTCAAAAAGAGAAGAAAG-----------------------------------------GTCTGCATTTTTAG--ACCCATAGGACATCCTAGACATTAAAGAGGgca i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1778258 158 + 3286835 ACAACT-GAGTGATAGTGAAAACTGATAATCAACATCAAGGACTAGAATACTTGGAAA-----TCACTTGTTAGA-GAATTTAATATGTCAGCCATTAAAGGTCAAAAA-AGAAGCAAG-----------------------------------------GTCTGCATTGTTAG--CCCCCTGGGTCATCCTAGACATTAAAGAGGACC i micMur3.chrUn_NW_017968520v1 I 6 C 0 s proCoq1.NW_012140747v1 1866663 159 + 4188776 ACAACT-AAATGATAGTGAGAACTCGTAATCAACCTCAAGGACTAGAATGCTTGGAAA-----TCACTTGTTAGA-GAATTTAATAAGTCAGCCATTAAATG-CAAAAA-AGAAGAAAG-----------------------------------------GTCTGCATTTTTAGACCCCCCTGGGTCATCCTAGACATTAAAGAGGACC i proCoq1.NW_012140747v1 I 6 C 0 s otoGar3.GL873602 8605101 156 + 8790067 ACAACTGGGGTGATAGTGAGAACTC--AGTCAACCTCAGTGACTAGAATGCTTGGAAA-----TCTCTTGTTAGA-GAATTTAATACATCAGCCCTTAAATGTCAAAAA-AGAAGAAAG-----------------------------------------GTTTGCATTTTTAG---TCCCTGGGTCATCCTGGACATTAAAGAGGACC i otoGar3.GL873602 I 484 C 0 s mm10.chr5 76408914 176 + 151834684 ACCACT-GAGTAAGAGTAGGAACTCATCGTC-------------ATAACGTTTG--------------TGCTGGAGAAATCTAGT---TCACTTTGGACATGCCAAAACAAGAAGAAAGAAGAGGAGGATGGGGGTGGGGGTAGTAGGAGAGGAGTGGGAGTCTGCATTTTAGA--TCCCCTGGGTCCTTTGAGACATTCAAGTAGGCA i mm10.chr5 C 0 C 0 s canFam3.chr13 47994027 159 + 63241923 AGAACT-GAATGATAGTAAGAACTTGTGATCAATCTATAAGACAAGAATGCTTAGAAA-----TCACCTGTTTGAGGAATTTAATATGTCAACCATGAGATGTCAAGGA-AGAAGAAAG-----------------------------------------GTCTGCATTTTTAG--CTTCTTGGGTCATCCTAGACATCCAAAAGGTCC i canFam3.chr13 I 3 C 0 s dasNov3.JH568349 4091495 154 - 5279953 ACAACG-GATTGATAGTGAAAATTCATAATCAACCTCAGAGACTAAAATGCTTGGTAATGCTGTCAACTATAAGTGGAATTTAATATATCGACCACGGAAAGTCAATGAAGAAGGAAAG-----------------------------------------A-----------AG--AACTTTGGGTAATCCCAGACATCAGAGAGGGCC i dasNov3.JH568349 I 5 C 0 a score=19110.000000 s hg38.chr4_KI270787v1_alt 51598 1 + 111943 a s panTro5.chr4 119616292 1 - 194502333 a i panTro5.chr4 C 0 C 0 s panPan2.chr4 121029702 1 - 195804263 a i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4460971 1 - 17550833 a i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69333864 1 - 118206036 a i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111537645 1 - 190429646 a i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110705784 1 - 189454096 a i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13273824 1 + 26754465 a i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4175093 1 - 5137665 a i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122889939 1 - 135778131 a i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1991774 1 + 2427316 a i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1285350 1 + 1448899 a i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53010872 1 - 190850796 a i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8171335 1 - 15139346 a i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6954989 1 - 7304997 a i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9373029 1 - 11631747 a i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1778416 1 + 3286835 A i micMur3.chrUn_NW_017968520v1 C 0 I 6 s proCoq1.NW_012140747v1 1866822 1 + 4188776 A i proCoq1.NW_012140747v1 C 0 I 76 s otoGar3.GL873602 8605257 1 + 8790067 A i otoGar3.GL873602 C 0 I 6 s mm10.chr5 76409090 1 + 151834684 A i mm10.chr5 C 0 C 0 s canFam3.chr13 47994186 1 + 63241923 A i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4091649 0 - 5279953 C a score=11099.000000 s hg38.chr4_KI270787v1_alt 51599 1 + 111943 c s panTro5.chr4 119616293 1 - 194502333 c i panTro5.chr4 C 0 C 0 s panPan2.chr4 121029703 1 - 195804263 c i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4460972 1 - 17550833 c i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69333865 1 - 118206036 c i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111537646 1 - 190429646 c i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110705785 1 - 189454096 c i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13273825 1 + 26754465 c i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4175094 1 - 5137665 c i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122889940 1 - 135778131 c i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1991775 1 + 2427316 c i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1285351 1 + 1448899 c i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53010873 1 - 190850796 c i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8171336 1 - 15139346 c i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6954990 1 - 7304997 c i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9373030 1 - 11631747 c i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76409091 1 + 151834684 T i mm10.chr5 C 0 I 2 s canFam3.chr13 47994187 1 + 63241923 T i canFam3.chr13 C 0 I 5 e proCoq1.NW_012140747v1 1866823 76 + 4188776 I e micMur3.chrUn_NW_017968520v1 1778417 6 + 3286835 I e dasNov3.JH568349 4091649 0 - 5279953 C e otoGar3.GL873602 8605258 6 + 8790067 I a score=7120734.000000 s hg38.chr4_KI270787v1_alt 51600 712 + 111943 acccccctggcaatgaaatgggacaaaataaaaatttggccatcaatactgcctctgggaaatctcaggcaaaaggaagaaaatgagaaatagaaatgaaatcctaagcccaccaagcaacagaacagacctcttctttgccaagggaccccagagaaa-ctcaaaaactgagttcccagccatgacgggatgggaggttggagaaacctcattataacccctccctcaccttttcctaagggttaaacagaaaccagccctttggaaagactcactccacccctagtatcaaccacctgatgcgacctctcccttctgtggtttctacaaaataaccggccagcattccttcctgataagagaccatggaggatgcgcagtaaggg-ttttcatgtcctctgcttcaacttttgacctcagagggctgaaaactcctccctgggatcatgctaactccactattttttgaacatggtacccatgaaggggcatgaagtttactggggcatgtgcatatttctcctttcataaatattcatgactcctgctatagtttattgaa-tatgtatgtttcgccacccctttcagcataaattcctgttccctttgctcctccctcaaagagcctgtttcta---------------------------gcttgtcagaatggccaccctgtaagatgcaaccttatatgagaaataaagctccgctttcc-aaaCGAAATAGAGCT s panTro5.chr4 119616294 713 - 194502333 acccccctggcaatgaaatgggacaaaataaaaatttggccatcaatactgcctctgggaaatctcaggcaaaaggaagaaaatgagaaatagaaatgaaatcctaagcccaccaagcaacagaacagacctcttctttgccaagggaccccagagaaa-ctcaaaaactgagttcccagccatgacgggatgggaggttggagaaacctcattataacccctccctcaccttttcctaagggttaaacagaaaccagccctttggaaagactcactccacccctagtatcaaccacctgatgctacctctcccttctgtggtttctacaaaataaccggccagcattccttcctgataagagaccatggaggatgcgcagtaaggg-ttttcatgtcctctgcttcaacttttgacctcagagggctgaaaactcctccctgggatcatgctaactccactattttttgaacatggtacccatgaaggggcatgaagtttactggggcatgtgcatatttctcctttcataaatattcatgactcctgctatagtttattgaaatatgtatgtttggccacccctttcagcataaattcctgttccctttgctcctccctcaaagagcctgtttcta---------------------------gcttgtcagaatggccaccctgtaagatgcaaccttacatgagaaataaagctccgctttcc-aaaCGAAATAGAGCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121029704 711 - 195804263 acccccc-ggcaatgaaatgggacaaaataaaaatttggccatcaatactgcctctgggaaatctcaggcaaaaggaagaaaatgagaaatagaaatgaaatcctaagcccaccaagcaacagaacagacctcttctttgccaagggaccccagagaaa-ctcaaaaactgagttcccagccatgacgggatgggaggttggagaaacctcattataacccctccctcaccttttcctaagggttaaacagaaaccagccctttggaaagactcactccacccctagtatcaaccacctgatgctacctctcccttctgtggtttctacaaaataaccggccagcattccttcctgataagagaccatggaggatgcgcagtaaggg-ttttcatgtcctctgcttcaacttttgacctcagagggctgaaaactcctccctgggatcatgctaactccactattttttgaacatggtacccatgaaggggcatgaagtttactggggcatgtgcatatttctcctttcataaatattcatgactcctgctatagtttattgaa-tatgtatgtttggccacccctttcagcataaattcctgttccctttgctcctccctcaaagagcctgtttcta---------------------------gcttgtcagaatggccaccctgtaagatgcaaccttatatgagaaataaagctccgctttcc-aaaCGAAATAGAGCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4460973 709 - 17550833 acccccctggcaatgaaatgggacaaaataaaagtttggccatcagtactgcctctgggaaatctcaggcaaaaggaagaaaatgagaaatagaaatgaaatcctaagcccaccaagcaacagaacagacctcttctttgccaagggaccccagagaaa-ctcaaaaactgagttcccagccatgacgggatgggaggttggagaaacctcattataacccctccctcaccttttcctaagggttaaacaaaaaccagccctttggaaagactcactccacccctagtatcaaccacctgatgctacctctcccttctgtggtttctacaaaataaccggccagcattccttcctgataagagaccatggaggatgtgcagtaaggg-ttttcatgtcctgtgcttcaacttttgacctcaga-ggctgaaaactcct--ctgggatcatgctaactccactactttttgaacatggtacccatgaaggggcatgaagtttactggggcatgtgcatatttctcctttcataaatattcatgactcctgctatagtttattgaa-tatgtatgtttggccacccctttcagcataaattcctgttccctttgctcctccctcaaagagcctgtttcta---------------------------gcttgtcagaatggccaccctgtaagatgcaaccttatatgagaaataaagctcccctttcc-aaaCGAAATAGAGCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69333866 713 - 118206036 atcaccctggcaatgaaataggacaaaataaaagtttggccatcaatactgcctctgggaaatctcaggcaaaaggaagaaaatgagaaataaaaatgaaatcctaagcccaccaagcaacagaacagacgtcctctttgccaagggaccccagagaaacctcaaaaactgagttcccagccatgacaggatgggaggttggagaaacctcattataacccctccctcacttttttctaagggttaaacagaaaccagccctttggaaagactcactccacccctagtatcaaccacctgatgctacctctcccttctgtggtttctacaaaataactggccagcattccttcctgataagagaccatggaggatgggcagtaagag-ttttcatgtcctctgcttcaacttttgtcttcagagggctgaaaactcctccctgggatcatgctaactccactattttttgaacatggtacccatgaaggggcatgaagtttattggggcatgtgcatatttctcctttcataaatattcatgactcctcctatagtttattgaa-tgtgtatgtttggtcaccactttcagcataaatccctgttctctttgctcctccctcaaagagtctgtttcta---------------------------gcttgtcagaatggccaccctgtaagatgcaaccttatgtgagaaataaagcacccctttcc-aaaCGAAATAGAGTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111537647 714 - 190429646 accaccctggcaatgaaatgggacaaaataaaagtttggccatcagtaccacctctgggaaatctcaggcaaaaggaagaaaatgagaaataaaaattaaatcctaagtgcaccaagcaacagaacagacctcctctttgccaagagatcccagagaaacctcaaaaactgagttcccagccatgacgggatgggaggctggagaaacctcattataatccctctgtcactttttcctaaggattaaacagaaaccagccctttggaaagactcactccacccctagtatcaaccacctgatgctacctctcccttctgtggtttctacaaaataaccggccagcattccttcctcgtaagagaccatggaggatgcgcagtaaggg-ttttcatgtcctctgcttcaacttttgacctcagagggctgaaaactcctccatgggatcatgccaactccactattttttgaacatggtacccatgaaggggcatgaagtttattggggaatgtgcatatttctcctttcataaatattcatgacttctcctatagtttattgaa-tatgtatgtttggccacccctttcagcataaattcatgttccctttgctcctccctcaaagagtctgtttcta---------------------------gcttctcagaatggccaccctgtaagatgcaaccttatatgagaaataaagctctcctttccaaaAAGAAATAGAGCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110705786 714 - 189454096 accaccctggcaatgaaatgggacaaaataaaagtttggccatcagtaccgcctctgggaaatctcaggcaaaaggaagaaaatgagaaataaaaattaaatcctaagtgcaccaagcaacagaacagacctcctctttgccaagagatcccagagaaacctcaaaaactgagttcccagccatgacgggatgggaggctggagaaacctcattataatccctctgtcactttttcctaaggattaaacagaaaccagccctttggaaagactcactccacccctagtatcaaccacctgatgctacctctcccttctgtggtttctacaaaataaccggccagcattccttcctcgtaagagaccatggaggatgcgcagtaaggg-ttttcatgtcctctgcttcaacttttgacctcagagggctgaaaactcctccatgggatcatgccaactccactattttttgaacatggtacccatgaaggggcatgaagtttattggggaatgtgcatatttctcctttcataaatattcatgacttctcctatagtttattgaa-tatgtatgtttggccacccctttcagcataaattcatgttccctttgctcctccctcaaagagtctgtttcta---------------------------gcttctcagaatggccaccctgtaagatgcaaccttatatgagaaataaagctctcctttccaaaAAGAAATAGAGCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13273826 714 + 26754465 accaccctggcaatgaaatgggacaaaataaaagtttggccatcagtaccgcctctgggaaatctcaggcaaaaggaagaaaatgagaaataaaaattaaatcctaagtgcaccaagcaacagaacagacctcctctttgccaagagatcccagagaaacctcaaaaactgagttcccagccatgatgggatgggaggctggagaaacctcattataatccctctgtcactttttcctaaggattaaacagaaaccagccctttggaaagactcactccacccctagtatcaaccacctgatgctacctctcccttctgtggtttctacaaaataaccggccagcattccttcctcgtaagagaccatggaggatgcgcagtaaggg-ttttcatgtcctctgcttcaacttttgacctcagagggctgaaaactcctccatgggatcatgccaactccactattttttgaacatggtacccatgaaggggcatgaagcttattggggaatgtgcatatttctcctttcataaatattcatgacttctcctatagtttattgaa-tatgtatgtttggccaccgctttcagcataaattcatgttccctttgctcctccctcaaagagtctgtttcta---------------------------gcttctcagaatggccaccctgtaagatgcaaccttatatgagaaataaagctctcctttccaaaAAGAAATAGAGCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4175095 714 - 5137665 accaccctggcaatgaaatgggacaaaataaaagtttggccatcaataccgcctctgggaaatctcaggcaaaaggaagaaaatgagaaataaaaatgaaatcctaagtgcaccaagcaacagaacagacctcctctttgccaagagatcccagagaaacctcaaaaactgagttcccagccatgacgggatgggaggctggagaaacctcattataatccctctgtcactttttcctaaggattaaacagaaaccagccctttggaaagactcactccacccctagtatcaaccacctgatgctacctctcccttctgtggtttctacaaaataaccggccagcattccttcctcgtaagagaccatggaggatgcgcagtaaggg-ttttcaggtcctctgcttcaacttttgacctcagagggctgaaaactcctccatgggatcatgccaactccactattttttgaacatggtacccatgaaggggcttgaagtttattggggaatgtgcatatttctcctttcataaatattcatgacttctcctatagtttattgaa-tatgtatgtttggccacccctttcagcataaattcatgttccctttgctcctccctcaaagagtctgtttcta---------------------------gcttctcagaatggccaccctgtaagatgcaaccttatatgagaaataaagctctcctttccaaaAAGAAATAGAGCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122889941 713 - 135778131 accaatctggcaacgaaatgggacaaaataaaagtttggccatcaataccgcctctcagaaatctcaggcaaaaggaagaaaatgagaaat-aaaatgaaatcctaagtgcaccaagcaacagaacagacctcctctttgccaagggatcccagagaaacctcaaaaactgagttcccagccatgacaggatgggaggctggagaaacctcattataatccctctgtcactttttcctaaggattaaacagaaaccagccctttggaaagactcactccacccccagtatcaaccacctgatgctacctctcccttctgtggtttctacaaaataaccggccagcattccttcctggtaagagaccatggaggatgcgcagtaaggg-ttttcatgtcctctgcttcaacttttgacctcagagggctgaaaactcctccatgggatcatgccaactccactgttttttgaacatggtacccatgaaggggcatgaagtttattggggaatgtgcatatttctcctttcataaatattcatgacttctcctatagtttattgaa-tatgtatgtttggccacccctttcagcataaattcgtgttccctttgctcctccctcaaagagtctgtttcta---------------------------gcttctcagaatggccaccctgtaagatgcaaccttatatgagaaataaagctctcctttccaaaAAGAAATAGAGCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1991776 714 + 2427316 accaccctgtcaatgaaatgggacaaaataaaagtttggccatcaataccgcctctgggaaatctcaggcaaaaggaagaaaatgagaaataaaaatgaaatcctaagtgcaccaagcaacagaacagaccttctctttgccaagagatcccagagaaacctcaaaaactgagttcccagccatgacgggatgggaggctggagaaacctcattacaatccctctgtcactttttcctaaggattaaacagaaaccagccctttggaaagactcactccacccctagtatcaaccacctgatgttacctctcccttctgtggtttctacaaaataaccggccagcattccttcctcgtaagagaccatggaggatgcgcagtaaggg-ttttcatgtcctctgcttcaacttttgacctcagagggctgaaaactcctccatgggatcatgccaactccactattttttgaacatggtacccatgaaggggcatgaagtttattggggaatgtgcatatttctcctttcataaatattcatgacttctcctatagtttattgaa-tatgtatgtttggccacccctttcagcataaattcatgttccctttgctcctccctcaaagagtctgtttcta---------------------------gcttctcagaatggccaccctgtaagatgcaaccttatatgagaaataaagctctcctttccaaaAAGAAATAGAGCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1285352 714 + 1448899 accaccctggcaatgaaatgggacaaaataaaagtttggccatcaataccgcctctgggaaatctcaggcaaaaggaagaaaatgagaaataaaaatgaaatcccaagtgcaccaagcaacagaacagacctcctctttgccaagggatcccggagaaacctcaaaaactgagttcccagccatgacgggatgggaggctggagaaacctcattataatccctctgtcactttttcctaagggttaaacagaaaccagccctttggaaaggctcactccacccctactatcaaccacctgatgctacctctcccttctgtggtttctacaaaataaccggccagcattccttcctggtaagagaccatggaggatgcgcagtaaggg-ttttcatgtcctctgcttcaacttttgacctcaaagggctgaaaactcctccatgggatcatgccaactccactattttttgaacatggtacccatgaaagggcatgaagtttattggggaatgtgcatatttctcctttcataaatattcatgacttctcctatagtttattgaa-tatgtatgtatggccacccctttcagcataaattcgtgttccctttgctcctccctcaaagagtctgtttcta---------------------------gcttctcagaatggccaccctgtaagatgcaaccttatatgagaaataaagctctcctttccaaaAAGGAGTAGAGCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53010874 714 - 190850796 accacgctggcaataaaatgggacacaataaaagcttggccatcaatactgcctctggcaaatctcaggcaaaaggaagaaaaCgagaaataaaaatgaaatcctaagtcccccaagcaatagaacagacctcctctttgccaagggaccccagagaaacctcaaaaactgagttctcagtcgtgatgacatgggaggttggacatacctcattataacccctccctcactttttcctaagggttaaacagaaaccagccctttggaaagacttactccaccactgatatc-accacctgatgctacctctcccttctgtggtttctaccaaatacccagccagccttccttcctggtaagagactatggaggatgcacagt--gagtttttcatgtcctctgcttcaacttttgacctcatagggctgaaaacacc---ctgagatcatgctaactccaccattttttaaatatgggacccatgaaggggcaagaagctcattggggtatgtgcatatttctcctttcataaatattcatgactcctcctgtagtttattgaa-tatgtatgtttggcaacccctttcagcataaattcctgttccctttgcccctccctcaaagactctgtttctagctct----------------------gcttgtcagaatggccaccctgtaagatgcaaccttatataagaaataaagctctcctttccaaaAAGAAATAGAGCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8171337 735 - 15139346 accaccctggcaataaaatgggacacaataaaagcttggccatcaatactgcctctggcaaatctcaggcaaaaggaagaaaaCAagaaataaaaatgaaatcctaagtcccccaagcaatagaacagacctcctctttgccaagggacccgagagaaacctcaaaaactgagttctcagccatgacagcatgggaagttggacatacctcattataacccctccttcactttttcctaagggttaaacagaaaccagccctttggaaagactgactccaccactgatatc-accacctgatgctacctctcccttctgtggtttctaccaaataaccagccagcattccttcctggtaagagactatggaggacacgcagtaagggtttttcatgtcctctgcttcaacttttgacctcagagggctgaaaacacc---ctgggatcatgctaactccaccattttttgattatgggacccatgaagggacatgaagctcattggggtatgtgcatatttctcctttcataaatattcatga---ctcctataggttattgaa-tatgtatgtttggtcacccctttcagcataaattcctgttccctttgccctttcatcagagactctgtttctagctcctggctggaggctatgcctcccagcttgtcagaatgaccaccctgtaagatgcaatcttatgtaagaaataaagctctcctttccaaaAAGAAATAGAGTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6954991 737 - 7304997 accaccctggcaataaaatgggacacaataaaagcttggccatcaatactgcctctggcaagtctaaggcaaaaggAAGAAAACAagaaataaaaatgaaatcctaagtcccccaagcaatagaacagacctcctctttgccaagggaccccagagaaacctcaaaaactgagctctcagccatgacagcatgggaggttggacatacctcattataacccctccctcactttttcctaagggttaaacagaaaccagccctttggaaagactcactccaccactgatatc-accacctgatgctacctctaccttctgtggtttctaccaaataaccagccagcattccttcctggtaaga-actatggaggacacacagtaagggcttttcatgtcctctgcttcaatttttgacctcagagggctgaaaatgcc---ctgggatcatgctaactccaccattttttgaatatgggacccatgaaggggcatgaagctcattggggtatgtgcatatttctcctttcataaatattcattactcctcctatagtttattgaa-tatgtatgtttggccacccctttcagcataaattccttttccctttgcccctccctcaaagactctgtttctagctcctggctggaggctatgcctcccagcttgtcagaatggccaccctgtaagatgcaacattatataaaaaataaagctctcctttccaaGAAGAAATAGAGCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9373031 737 - 11631747 accaccctgccaataaaatgggacacaataaaagtttggccatcaatactgcctctggcaaatctcaggcaaaaggaaggaaatgagaaaagaaaatgaaatcctaagtcccccaagcaatagaacagacctcctctttgccaagggaccccaaagaaacctcaaaaactgagttctcagccatgacggcatgggaggttggacatatctcattataacccctctctcacgttttcctaagggttaaacagaaactaaccctttggaaagactcactccaccactggtatt-accacctgattctacctctcccttctgtggtttctaccaaataaccagccagcattccttcctggtaagagactctggagaatgtgcagtaagggtttttcatgtcctctgcttcaatttttgacctcagagggctgaaaacacc---ctgggatcatgctaactccaccattttttgaatatgggacccatgaaggggcatgaagctcactggggtatgtgcatatttctcctttcataaatattcatgactcctcctatagtttattgaa-tatgtatatttggccacccctctcagcataaattcctgttccctttgccccttcctcaaagactctgtttctagctcctggctggaggctatgcctcccagcttgtcagaatggccaccctgtaagatgcaaccttatataagaaataaagctct-ctttccaaaAAGAAATAGAGCT i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1866823 76 + 4188776 I e micMur3.chrUn_NW_017968520v1 1778417 6 + 3286835 I e mm10.chr5 76409092 2 + 151834684 I e dasNov3.JH568349 4091649 0 - 5279953 C e otoGar3.GL873602 8605258 6 + 8790067 I e canFam3.chr13 47994188 5 + 63241923 I a score=88051.000000 s hg38.chr4_KI270787v1_alt 52312 8 + 111943 ACATATTA s panTro5.chr4 119617007 8 - 194502333 ACATATTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121030415 8 - 195804263 ACATATTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4461682 8 - 17550833 ACATATTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69334579 8 - 118206036 ACATATTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111538361 8 - 190429646 ACATATTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110706500 8 - 189454096 ACATATTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13274540 8 + 26754465 ACATATTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4175809 8 - 5137665 ACATATTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122890654 8 - 135778131 ATATATTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1992490 8 + 2427316 ACATATTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1286066 8 + 1448899 ACATATTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53011588 8 - 190850796 ACGTATTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8172072 8 - 15139346 ACGTATTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6955728 8 - 7304997 ACGTATTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9373768 8 - 11631747 ACGTATTA i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4091649 8 - 5279953 ATATATCA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1866823 76 + 4188776 I e micMur3.chrUn_NW_017968520v1 1778417 6 + 3286835 I e mm10.chr5 76409092 2 + 151834684 I e otoGar3.GL873602 8605258 6 + 8790067 I e canFam3.chr13 47994188 5 + 63241923 I a score=51772.000000 s hg38.chr4_KI270787v1_alt 52320 5 + 111943 ATCTT s panTro5.chr4 119617015 5 - 194502333 ATCTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121030423 5 - 195804263 ATCTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4461690 5 - 17550833 ATCTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69334587 5 - 118206036 ATCTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111538369 5 - 190429646 ATCTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110706508 5 - 189454096 ATCTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13274548 5 + 26754465 ATCTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4175817 5 - 5137665 ATCTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122890662 5 - 135778131 ATCTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1992498 5 + 2427316 ATCTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1286074 5 + 1448899 ATCTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53011596 5 - 190850796 ATCTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8172080 5 - 15139346 ATCTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6955736 5 - 7304997 ATCTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9373776 5 - 11631747 ATCTT i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76409094 3 + 151834684 ATC-- i mm10.chr5 I 2 C 0 s dasNov3.JH568349 4091657 4 - 5279953 ATCT- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1866823 76 + 4188776 I e micMur3.chrUn_NW_017968520v1 1778417 6 + 3286835 I e otoGar3.GL873602 8605258 6 + 8790067 I e canFam3.chr13 47994188 5 + 63241923 I a score=385263.000000 s hg38.chr4_KI270787v1_alt 52325 27 + 111943 AATCTACTTGACAAGTGGAAAATAAAA s panTro5.chr4 119617020 27 - 194502333 AATCTACTTGACAAGTGGAAAATAAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121030428 27 - 195804263 AATCTACTTGACAAGTGGAAAATAAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4461695 26 - 17550833 AAT-TACTTGACAAGTGGAAAATAAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69334592 27 - 118206036 AATCTACTTGACAAGTGGAAAATAAAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111538374 27 - 190429646 AATCTACTTGACAAGTGGAAAATAAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110706513 27 - 189454096 AATCTACTTGACAAGTGGAAAATAAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13274553 27 + 26754465 AATCTACTTGACAAGTGGAAAATAAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4175822 27 - 5137665 ATTCTACTTGACAAGTGGAAAATAAAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122890667 27 - 135778131 AATCTACTTGACAAGTGGAAAATAAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1992503 27 + 2427316 AATCTACTTGACAAGTGGAAAATAAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1286079 27 + 1448899 AATCTACTTGACAAGTGGAAAATGAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53011601 27 - 190850796 AACCTACTTGACAAGTGGAAAATAAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8172085 27 - 15139346 AACCTACTTGACAAGTAGAAAATAAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6955741 27 - 7304997 AACCTACTTGACAAGTGGAAAATAAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9373781 23 - 11631747 AACCTACTTGACGAGTAGA----AAAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1778423 27 + 3286835 AATCTACTTGACAAGTGGAAAATAAAA i micMur3.chrUn_NW_017968520v1 I 6 I 27 s otoGar3.GL873602 8605264 24 + 8790067 AATCTACTTGATCAGTGGAAAAGT--- i otoGar3.GL873602 I 6 C 0 s mm10.chr5 76409097 27 + 151834684 AATCAACTTGCCAAGTGCCAAGTGAAA i mm10.chr5 C 0 C 0 s canFam3.chr13 47994193 27 + 63241923 AACCTACTTGATAAATGGAAAATAAAA i canFam3.chr13 I 5 C 0 s dasNov3.JH568349 4091661 21 - 5279953 -----ATTTGACAAGTGGGAAAAAAA- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1866823 76 + 4188776 I a score=313687.000000 s hg38.chr4_KI270787v1_alt 52352 36 + 111943 TAGAACAAATAA--AAACA-----CAACTCAACTC-----AACTCTTC s panTro5.chr4 119617047 36 - 194502333 TAGAACAAATAA--AAACA-----CAACTCAACTC-----AACTCTTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121030455 36 - 195804263 TAGAACAAATAA--AAACA-----CAACTCAACTC-----AACTCTTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4461721 41 - 17550833 TAGAACAAATAA--AAACA-----CAACTCAACTCAACTTAACTCTTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69334619 41 - 118206036 TACAACAAATAA--AAACA-----CAACTCAACTCAACTTAACTCTTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111538401 41 - 190429646 TAGAACAAATAA--AAACA-----CAACTCAACTCAACTTAACTCTTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110706540 41 - 189454096 TAGAACAAATAA--AAACA-----CAACTCAACTCAACTTAACTCTTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13274580 41 + 26754465 TAGAACAAATAA--AAACA-----CAACTCAACTCAACTTAACTCTTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4175849 46 - 5137665 TAGAACAAATAA--AaacacaaatcaactcaactcaacttaactcTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122890694 41 - 135778131 TAGAACAAATAA--AAACA-----CAACTCAACTCAACTTAACTCTTC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1992530 41 + 2427316 TAGAACAAATAA--AAACA-----CAACTCAACTCAACTTAACTCTTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1286106 41 + 1448899 TAGAACAAATAA--AAACA-----CAACTCAACTCAACTTAACTCTTC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53011628 36 - 190850796 TAAAACAAATAG--AAACA-----CAACTCAAGTC-----AACTCTTC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8172112 36 - 15139346 TAAAACAAATAG--AAACA-----CAACTCAACTC-----AACTCTTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6955768 31 - 7304997 TAAAACAAATAG--AAACA-----CAAC-----TC-----AACTCTTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9373804 36 - 11631747 TAAAACAAATAG--AAACA-----CAACTCAACTC-----AACTCTTC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8605288 22 + 8790067 TTTGGTAAACCA--AAACT-----TCGTC------------------- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76409124 33 + 151834684 TAGAACC-------AAGTG-----TGACTCAATCC-TCTTACCTCC-- i mm10.chr5 C 0 C 0 s canFam3.chr13 47994220 40 + 63241923 TAGAACACACAACTAGACC-----CAAATTCCCCCACCTCCATCC--- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4091682 31 - 5279953 ----------TA--GAAGA-----CAACTAAACCCAAACTTCCCCTCC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1866823 76 + 4188776 I e micMur3.chrUn_NW_017968520v1 1778450 27 + 3286835 I a score=4217452.000000 s hg38.chr4_KI270787v1_alt 52388 301 + 111943 TGCCTGAAAATACTGAATGTTCAGGTTGA-CAGAAATCT-----------------------AAAAAATGG--------------TGTTTTCCATGTTTATGCT-GGTGTAGATCCTATGGAGATGAGATTAGCTGATTTAGGGCTTGTAAAGCTAAGAAATACAGGGAGAAGTTCATTCTGTTTCT-GGGAATTCTGATCCTA---------GATACTCTTCTTAG-AAATCATGATAGCTTTCTCTGAAAATGCTTTA-------------------------------CTTTGAATCAGTTGCATTCAG-GAAAATAGATAATTCTAGCAGAAAAAGGGTAGGATGGCTGTGAATTCATAAGGGAATGGTCACTGACTAA s panTro5.chr4 119617083 301 - 194502333 TGCCTGAAAATACTGAATGTTCAGGTTGA-CAGAAATCT-----------------------AAAAAATGG--------------TGTTTTCCATGTTTATGTT-GGTGTAGATCCTATGGAGATGAGATTAGCTGATTTAGGGTTTGTAAAGCTAAGAAATACAGGGAGAAGTTCATTCTGTTTCT-GGGAATTCTGATCCTA---------GATACTCTTCTTAG-AAATCATGATAGCTTTCTCTGAAAATGCTTTA-------------------------------CTTTGAATCAGTTGCATTCAG-GAAAATAGATAATGCTAGCAGAAAAAGGGTAGGATGGCTGTGAATTCATGAGGGAATGGTCACTGACTAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121030491 301 - 195804263 TGCCTGAAAATACTGAATGTTCAGGTTGA-CAGAAATCT-----------------------AAAAAATGG--------------TGTTTTCCATGTTTATGTT-GGTGTAGATCCTATGGAGATGAGATTAGCTGATTTAGGGTTTGTAAAGCTAAGAAATACAGGGAGAAGTTCATTCGGTTTCT-GGGAATTCTGATCCTA---------GATACTCTTCTTAG-AAATCATGATAGCTTTCTCTGAAAATGCTTTA-------------------------------CTTTGAATCAGTTGCATTCAG-GAAAATAGATAATTCTAGCAGAAAAAGGGTAGGATGGCTGTGAATTCATGAGGGAATGGTCACTGACTAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4461762 301 - 17550833 TGCCTGAAAATACTGAATGTTCAGGTTGA-CAGAAATCT-----------------------AAAAAATGG--------------TGTTTTCCATGTTTATGTT-GGTGTAGAGCCTATGGAGATGTGATTAGCTGATTTAGGGTTTGTAAAGCTAAGAAATACAGGGAGAAGTTCATTCTGTTTCT-GGGAATTCTGATCCTA---------GATACTCTTCTTAG-AAATCATGATAGCTTTCTCTGAAAATGCTTTA-------------------------------CTTTGAATCAGTTGCATTCAG-GAAAATAGATAATTCTAACAGAAAAAGGGTAGGATGGCTGTGAATTCATGAGGGAATGGTCACTGACTAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69334660 302 - 118206036 TGCCTGAAAATACTGAATGTTCAGGTTGA-CAGAAATCT----------------------AAAAAAATGG--------------TGTTTTCCATGTTTATGTT-GGTGTAGATCCTATGGAGATGTGATTAGCTGATTTAGGGTTTGTAAAGCTAAGAAATACAGGGAGAAGGTCGTTCTGTTTCT-GAGAATTCTGATCCTA---------GATACTCTTCTTAG-AAATCATGATAGCTTCCTCTGAAAATGCTTTA-------------------------------CTTTGAATCAGTTGCATTCAG-GAAAATAGATAATTCTAACAGAAAAAGGGTAGGGTGGCTGTGAATTCGTGAGGGAATGGTCACTGACTAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111538442 303 - 190429646 TGCCTGAAAATGCTGAATGTTCAGGTTGA-CAGAAATCT----------------------AAAAAAATGG--------------TGTTTTCCACGTTTATGTT-GGTATAGATCCTATAGAGATGTGATTAGCTGAGTTAGGGTTTGTAAAGCTAAGAAATACAGGGAGAAGTTCATTCTGTTTCCAGGGAATTCTGATCCTA---------GAGACTCTTCTTAG-AAATCATGATAACCTTCTATGAAAATGCTTCA-------------------------------CTTTGAATCAGTTACATTCAG-GAAAATAGATAATTCTAACAGAAAAAGGGTAGGATGGCTGTGAATTCGTGAGGGAATGGTCATTGACTAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110706581 303 - 189454096 TGCCTGAAAATGCTGAATGTTCAGGTTGA-CAGAAATCT----------------------AAAAAAATGG--------------TGTTTTCCACGTTTATGTT-GGTATAGATCCTATAGAGATGTGATTAGCTGAGTTAGGGTTTGTAAAGCTAAGAAATACAGGGAGAAGTTCATTCTGTTTCCAGGGAATTCTGATCCTA---------GAGACTCTTCTTAG-AAATCATGATAACCTTCTATGAAAATGCTTCA-------------------------------CTTTGAATCAGTTACATTCAG-GAAAATAGATAATTCTAACAGAAAAAGGGTAGGATGGCTGTGAATTCGTGAGGGAATGGTCATTGACTAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13274621 303 + 26754465 TGCCTGAAAATGCTGAATGTTCAGGTTGA-CAGAAATCT----------------------AAAAAAATGG--------------TGTTTTCCACGTTTATGTT-GGTATAGATCCTATAGAGATGTGATTAGCTGAGTTAGGGTTTGTAAAGCTAAGAAATACAGGGAGAAGTTCATTCTGTTTCCAGGGAATTCTGATCCTA---------GAGACTCTTCTTAG-AAATCATGATAACCTTCTATGAAAATGCTTCA-------------------------------CTTTGAATCAGTTACATTCAG-GAAAATAGATAATTCTAACAGAAAAAGGGTAGGATGGCTGTGAATTCGTGAGGGAATGGTCATTGACTAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4175895 303 - 5137665 TGCCTGAAAATGCTGAATGTTCAGGTTGA-CAGAAATCT----------------------AAAAAAATGG--------------TGTTTTCCACGTTTATGTT-GGTATAGATCCTATAGAGATGTGATTAGCTGAGTTAGGGTTTGTAAAGCTAAGAAATACAGGGAGAAGTTCATTCTGTTTCCAGGGAATTCTGATCCTA---------GAGACTCTTCTTAG-AAATCATGATAACCTTCTATGAAAATGCTTCA-------------------------------CTTTGAATCAGTTACATTCAG-GAAAATAGATAATTCTAACAGAAAAAGGGTAGGATGGCTGTGAATTCGTGAGGGAACGGTCATTGACTAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122890735 304 - 135778131 TGCCTGAAAATGCTGAATGTTCAGGTTGA-CAGAAATCTA---------------------AAAAAAATGG--------------TGTTTTCCATGTTTATGTT-GGTATAGATCCTATGGAGATGTGATTAGCTGAGTTAGGGTTTGTAAAGCTAAGAAATACAGGGAGAAGTTCATTCTGTTTCCAGGGAATTCTGATCCTA---------GAGACTCTTCTTAG-AAATCATGATAACCTTCTATGAAAATGCTTCA-------------------------------CTTTGAATCAGTTGCATTCAG-GAAAATAGATAATTCTAACAGAAAAAGGGTAGGATGGCTGTGAATTCATGAGGGAATGGTCACTGACTAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1992571 303 + 2427316 TGCCTGAAAATGCTGAATGTTCAGGTTGA-CAGAAATCT----------------------AAAAAAATGG--------------TGTTTTCCACGTTTATGTT-GGTATAGATCCTATAGAGATGTGATTAGCTGAGTTAGGGTTTGTAAAGCTAAGAAATACAGGGAGAAGTTCATTCTGTTTCCAGGGAATTCTGATCCTA---------GAGACTCTTCTTAG-AAATCATGATAACCTTCTATGAAAATGCTTCA-------------------------------CTTTGAATCAGTCACATTCAG-GAAAATAGATAATTCTAACAGAAAAAGGGTAGGATGGCTGTGAATTCGTGAGGGAACGGTCATTGACTAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1286147 303 + 1448899 TGCCTGAAAATGCTGAATGTTCAGGTTGA-CAGAAATCT----------------------AAAAAAATGG--------------TGTTTTCCATGTTTATGTT-GGTATAGATCCTATGGAGATGTGATTAGCTGAGTTAGGGTTCGTAAAGCTAAGAAATACAGGGAGAAGTTCATTCTGTTTCCAGGGATTTCTGATCCTA---------GAGACTCTTGTTAG-AAATCACGATAACTGTCTATGAAAATGCTTCA-------------------------------CTTTGAATCAGTTGCATTCAG-GAAAATAGATAATTCTAACAGAAAAAGGGTAGGATGGCTGTGAATTCGTGAGGGAATTGTCACTGACTAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53011664 298 - 190850796 TGCCTGAAAATACTGAATGTTCAGGTTGA-CAGAAATCT-----------------------AAAACATGG--------------TGTTTTTCATGTTTACGTTAAATGTAGATCCTATGGAGATGTGATTGGCTGATTTAGGGTTTGTAAAGCTAAGAATTACAGGGAGAGGTTTGTTCTGTTTCCTGGGAATCCTGATCCTA---------GAGGTGCTTCTTAG-AAATCATGATAGTCTTCTCTGAAAATGCTTCA-------------------------------TTTTGAATCAGTTGCTTTCAG-AAAAATAGATAATTCTAAAAGGAAGAGGGTAGGATGGCTGTGAATTAGTGA-GGAATGGTC----ACTAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8172148 280 - 15139346 TGCCTGAAAATGCTGACTGTTCAGGTTGA-CTGAAATCT-----------------------AAAACATGG--------------TGTTTTACACGTTTATGTTAAGTATAGATCCTATGGACATGTGATTGGCTGATTTAGGGTTTGTAAAGCTAAGAAATACAGGGAGAAGTTTGTTCTGTTTCCTGGGAATTCTGATTCTA---------GAGGTGC-------------------GTCTTCTCTGAAAATGCTTCA-------------------------------TTTTGAATCAGTTGCATTCAG-AAAAATAGATAATTCTAACAGGAAGAGGGTAGGATGGCTGTGAATTAGTGA-GGAATGGtc----actaa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6955799 298 - 7304997 TGCCTGAAAATACTGAATGTTCAGGTTGA-CTAAAATCT-----------------------AAAACATGG--------------TGTTTTTCAAGTTTATGTTAAGTGTAGATTCTATGGAGATGTGATTGGCTGGTTTAGGTTTTGTAAAGCTAAGAAATACAGGGAGAAGTTTGTTCTGTTTCCTGGGAATTCTGGTCCTA---------GAGGTGCTTCTTAG-AAATCATGATAGTATTCTCTGAAAATGCTTCA-------------------------------TTTTGAATCAGTCGCATTCAG-AAAAATAGATAATTCTAACAGGAAAAGGGTAGAATGGCTGTGAATTAGTGA-GGAATGGtc----actaa i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9373840 298 - 11631747 TGTCTGAAAATACTGAATGTTCAGGTTGA-CTGAAATCT-----------------------AAAACATGG--------------TGTTTTTCATGTTTATGTTAAGTATAGATCCTATGGAGATGTGATTGGCTGATTTAGGGTTTGTAAAGCTAAGAAATACAGGGAGAAGTTTGTTCTGTTTCCTGGGAATTCTGATCCTA---------GAAGTGCTTCTTAG-AAATCATGATAGTCTTCTCTGAAAATGCTTCA-------------------------------TGTTGAATCAGTTGCATTCAG-AAAAATAGATAATTCTAACAGGAAGAGGGTAGGATGGCTGTGAATTAGTGA-GGAATGGtc----actaa i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1778477 300 + 3286835 TGCCTGAAAATATTGAATGTGAAGGTTGG-TAGAAATCT-----------------------GAAAAATGG--------------TGTTTTCCATGTTTACATT-GTTATAGATTCTATGGGAA-GTGATTGGCTGATTGAGGGTTTGTAAAACTAAGAAATACAAGGAAATTTTCATTCCTTCACCTAGGAATTCTGCTCCTA---------GAGACTCCTTTTAG-AAATCCTGATAGCCTCCTCTGAAAATGCTTTC-------------------------------TTTTGAATCAATTGCATTCAG-AAAAATAGAAAGTACTAACAGGAAAAGGATGGGGTGGATGT-AATTAATAAGGAAACGGTCACTGACTAA i micMur3.chrUn_NW_017968520v1 I 27 I 186 s proCoq1.NW_012140747v1 1866899 296 + 4188776 TGCCTGAAAATACTGAATATAAAGGTTGG-TGGAAATCT-----------------------GAAAAATGC--------------TGTTTTCCATGTTTATGTT-GGTATAGATCCTATGGGAA-GTGATTGGCTGATTTAGGGTTTGTAAAGCTGAGAAATACAGGGAAATGTTCATTCAATTTCCTAGGAATTCTGCTCCTA---------GAGACTCCTCTTAA-AAATCGTGATAGCCTTCTCTGAAAATGCTTTC-------------------------------TTTTGAGTCACTTACATTCAG-AAATATAGAAAGTTCCAACAGAAAAAGAATGGAGTGGATG-----Taataagggaatggtcattgactaa i proCoq1.NW_012140747v1 I 76 C 0 s otoGar3.GL873602 8605310 298 + 8790067 TCCCTGAAAATCCTGAATGCGAAGGTTGGTTAGAAATCT-----------------------GAAAAATTG--------------TGTTTTCCATGTTTACATT-GGTGTAGATTCTATAGTAA-ATGATTGGCTGATTTAGGATTTGTAAAGCTAAGAAATACAGAGAAAAGTTCATTCTGTTTCCTAGGAATTCTGCCTCTA---------GAGTCTCCTCTTAG-AAATCTTAATAGTCTTATCTG-AAATTCCTTC-------------------------------TTTTGAATCAA--GCATTCAG-AAAAATAGAAAATTCTAAAAGAACAAGGGCAGCATGGATGT-AATTCATGAGGGAACGGTCATGGCCTGC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76409157 373 + 151834684 TGCCTGGAAATCACAAACATGAAAATTGG-TAGGGataaataaataaataaataaataaataaataaatGGATGGATGGACGGACGGTGTTGTGTGTCCATATT-GGCATGGGTCCTGTGTGAAGGTGA-TGGCTGGAT--GAGTGTGTCACACTGAGGAATAT--GGAACTGCTCACTCCATTTTCCAGGAACTCTTAGGCTATGGAATTATGAGGCTCTTAGGAGTAAATTATCACAGTTTTCTCTGAAAATATTTCCTTCGAATCAATATAGGTCTCCCTGGAAATCTTTTAGAATCAGTTCCTTTTGGAAAAAACAGAAGGTTCTACCAGAAAAAGGATTGAAGG---ATGAATAGTTAAAGGATTAGTCACAGATTAA i mm10.chr5 C 0 C 0 s canFam3.chr13 47994260 300 + 63241923 CATCTGAAAATAACAAATGTGAAGTCTGA-TGGAAATCT-----------------------AGAATGTGG-----TG-------TGTTTTCCATGTTTACACT-GGCATAGGTCCAATATGAA-GTAGTTA-TTAATTTAGGATTAGTAAAGCAAAGGAAATCAGGAAGAAGTGAGTTCCTTTGCC-CAGAATTCAGCTTCTG---------GAGACTCCTTTTAG-AAATCAGGATAGTCTTCTCTG-ATGTACTTCC-------------------------------TTTTGAATTAATTGCATTTTG-AAAAATAGAAAGCTCTAACAGAAAAAGGATGGGATGGATATGAGTTATTGAGGGAACAATCATCCACCAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4091713 236 - 5279953 TGCCTGAAGATAATGAACATGAAGGTTGA-TGGAAATCT-----------------------GTAAAATGG--------------CATTTCCCGTGTTTATGTT-GGGGGAAATCCTATGTGGAAGTAGTTGGCCCATTCAGAGTGAGTAAAACTAAGGAACACAGGGAGGAGTTAGCTCTACTTCC---------------TA---------GAGACTCCTCTTGG-AAATCATGATGGTTTTCTAT--------TGCA-------------------------------TTCT------------------GAAAATAACGAGTT--------------------------TGAATTAATGAGTTagcagtcacttactgc i dasNov3.JH568349 C 0 C 0 a score=582680.000000 s hg38.chr4_KI270787v1_alt 52689 47 + 111943 GCATCTGGTACCTCCCAAGCTCCATGCTCAGTGCTTTGTGCATACTC s panTro5.chr4 119617384 47 - 194502333 GCATCTGGTACCTCCCAAGCTCCATGCTCAGTGCTTTGTGCATACTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121030792 47 - 195804263 GCATCTGGTACCTCCCAAGCTCCATGCTCAGTGCTTTGTGCATACTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4462063 47 - 17550833 GCATCTGGTACCTCCCAAGCTCCATGCTCAGTGCTTTGTGCATACTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69334962 47 - 118206036 GCATCTGGTACCTCCCAAGCTCCATGCTCAGTGCTTTGTGCATACTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111538745 47 - 190429646 GCATCTGATACCTCCCAAGCTCCGTGCTCAGTCCTTTGTGCATACTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110706884 47 - 189454096 GCATCTGATACCTCCCAAGCTCCGTGCTCAGTCCTTTGTGCATACTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13274924 47 + 26754465 GCATCTGATACCTCCCAAGCTCCGTGCTCAGTCCTTTGTGCATACTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4176198 47 - 5137665 GCATCTGATACCTCCCAAGCTCCGTGCTCAGTCCTTTGTGCATACTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122891039 47 - 135778131 GCATCTGATACCTCCCAAACTCCGTGCTCAGTCCTTTGTGCATACTC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1992874 47 + 2427316 GCATCTGATACCTCCCAAGCTCCGTGCTCAGTCCTTTGTGCATACTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1286450 47 + 1448899 GCATCTGATACCGCCCAAGCTCCGTGCTCAGTCCTTTGTGCATACTC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53011962 47 - 190850796 GCATCCAGTACATTCCGAGCTCTGTGCTCAGTGCTTTGTGCATATTC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8172428 47 - 15139346 gcatccagtacattccaagctctgtgctcagtgcttcgtgcatattc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6956097 47 - 7304997 gcatccagtacattccaagctctgtgctcagtgctttatgcatattc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9374138 47 - 11631747 gcatccagtacattccaagctctgtgctcagtgctttgtgcatattc i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1867195 45 + 4188776 gcacccaggacacc--aagctctgtgctcggtgctttgtgcacagta i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8605608 33 + 8790067 GCATGTGGGACACC--------------CCATGCTCCGTGCTCACTG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76409530 36 + 151834684 ----GCAGTGCATTCAAGACT-------TAGTGCTCTGTGCATGGTC i mm10.chr5 C 0 I 992 s canFam3.chr13 47994560 46 + 63241923 -AACCCAGTACTTCCTAAGCTCCATGCTTGATACTTTGTGCATGCTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4091949 47 - 5279953 atacccaatgcatcccaagctctgagcttggcactttgtgcatgctg i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1778777 186 + 3286835 I a score=2081337.000000 s hg38.chr4_KI270787v1_alt 52736 169 + 111943 TCTCTGCTGA---GGTCCAACGGCAC-CTGGcata----tcagaaaactgaagctctgggaagtgatatactttgtcccaggtcactgagtcacagagccaggactctgacctaggtcagtctgactccagagacaaagttattttcccaacatc-cagttaccAACCCAACTCaatc--------- s panTro5.chr4 119617431 169 - 194502333 TCTCTGCTGA---GGTCCAACAGCAC-CTGGcata----tcagaaaactgaagctctgggaagtgatatactttgtcccaggtcactgagtcacagagccaggactctgacctaggtcagtctgactccagagacaaagttattttcccaacatc-cagttaccaacccaactcaatc--------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121030839 169 - 195804263 TCTCTGCTGA---GGTCCAACAGCAC-CTGGcata----tcagaaaactgaagctctgggaagtgatatactttgtcccaggtcactgagtcacagagccaggactctgacctaggtcagtctgactccagagacaaagttattttcccaacatc-cagttaccaacccaactcaatc--------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4462110 169 - 17550833 TCTCTGCTGA---GGTCCAACGGCAC-CTGGcata----tcagaaaactgaagctctgggaagtgatatactttgtcccaggtcactgagtcacagagccaggactctgacctaggtcagtctgactccagagacaaagttattttcccaacatc-cagttaccaacccaactcaatc--------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69335009 169 - 118206036 TCTCTGCTGA---GGTCCAACAGCAC-CTGGcata----tcagaaaactgaagctctgggaagtgatatactttgtcccaggtcactgagtgacagagccaggacactgacctaggtcagtctgactccagagacaaagttattttcccaacatc-cagttaccAACCCAACTCAATC--------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111538792 169 - 190429646 TCTCTGCTGA---GGTCCAACAGCAC-CTGGTATa----tcagaaaactgaagctctgggaagtgatatactttgtcccaggtcactgagtgacagagtcagaactctgacctaggtcagtctgactccagagacaaagttattttcccaacatc-cagttaccaacccaactcaatc--------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110706931 169 - 189454096 TCTCTGCTGA---GGTCCAACAGCAC-CTGGTATa----tcagaaaactgaagctctgggaagtgatatactttgtcccaggtcactgagtgacagagtcagaactctgacctaggtcagtctgactccagagacaaagttattttcccaacatc-cagttaccAACCCAACTCAATC--------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13274971 169 + 26754465 TCTCTGCTGA---GGTCCAACAGCAC-CTGGTATa----tcagaaaactgaagctctgggaagtgatatactttgtcccaggtcactgagtgacagagtcagaactctgacctaggtcagtctgactccagagacaaagttattttcccaacatc-cagttaccaacccaactcaatc--------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4176245 169 - 5137665 TCTCTGCTGA---GGTCCAACAGCAC-CTGGTATa----tcagaaaactgaagctctgggaagtgatatactttgtcccaggtcactgagtgacagagtcagaactctgacctaggtcagtctgactccagagacaaagttattttcccaacatc-cagttaccaacccaactcaatc--------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122891086 169 - 135778131 TCTCTGCTGA---GGTCCAACAGCAC-CTGGTATa----tcagaaaactgaagctctgggaagtgatatactttgtcccaggtcactgagtgacagagtcagaactctgacctaggtcagtctgactccagagacaaaattattttcccaacatc-cagttaccAACCCAACTCAGTC--------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1992921 168 + 2427316 TCTCTGCTGA---GGTCCAACAGCAC-C-GGTATa----tcagaaaactgaagctctgggaagtgatatactttgtcccaggtcactgagtgacagagtcagaactctgacctaggtcagtctgactccagagacaaagttattttcccaacatc-cagttaccaacccaactcaatc--------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1286497 169 + 1448899 TCTCTGCTGA---GGTCCAACAGCAC-CTGGTATa----tcagaaaactaaagctctgggaagtgatatactttgtcccaggtcactgagtgacagagtcagaactctgagctaggtcagtctgactccagagacaaagttattttcccaacatc-cagttaccaacccaactcaatc--------- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53012009 168 - 190850796 TCTCTGCTGA---GGTCCGACAGcac-cttgcata----tcagaaaactgaagc-ctgggaagtgatatgctttgtcccaggtcactgagtgacagagtcaggactctgacctaggtcagtctgactctagagACAAAGTCATTTTCCCATCATC-CAGTTACCAACCCAactcaacc--------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8172475 169 - 15139346 tctctgctaa---ggtccaacagaac-cttgcata----tcagaaaacagaaactctgggaggtgatatgctttgtcccaggtcactgagtgagagagtcagggctctgacctgggtcagtctgactctagagacaaagtcattttcccaacatc-cagttaccAACCCAACTCAATC--------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6956144 169 - 7304997 tctctgctga---ggtccaacagcac-cttgcata----tcagaaaactgaagctctgggaagtgatatgctttgtcccgggtcactgagtaacagattcaggactctgacctaggtcagtctgactctagagACAAAGTCATTTTCCCAACGTC-CAGTTACCAACCCAactcaacc--------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9374185 169 - 11631747 tctctgctga---ggtccaatagcac-cttgcata----tcagaaaactgaagctctgggaagtgatatgctttgtcccaggtcactgagtgacagagtccggactctgacctaggtcagtctgactctagagACAAAGTCATTTTCCCAACATC-CAGTTATCAACCCAactcaacc--------- i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1867240 130 + 4188776 tcacagtta-----gtccaacagcac-cttacacg----tgagaaaactgaagctctgggaaatgaagggacttgtcccaggtcccccggtgacagagtgaggactctgaccaaggtccgtctgactt-------------------cCAGCat--------------caacg-------------- i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8605641 153 + 8790067 TCTCAGCTC-----ATCCATCTGCACGTTTATAAGACATTGATTAGCctgaagcttttggaagtgaagtgacttgttccagtccctccagtgac-gagtcaggactctgaccaagatctgtgtaactgcagagAAAAAGTTATTTTACCAACAT--------------CAACA-------------- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47994606 165 + 63241923 TCTTGATTAatctggtc----agcac-cctattca----caagaaaactgaagctctgggaagtgaagtatttt---ccaggtcccccagtggcagagtcaggctcctaaccaaggttggtctgagtgaagaaacaaagttcttttcCCAATAAC-AATTTACCAATCCAactcaaca--------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4091996 154 - 5279953 tctcgg-tga---gtcctgacagctc-ctcacaca----tgatgaacctgaaga---------------atcttgctctagaccccagactggcagaggcaggatttgaaccaaggtcgttctgac---------aaagttcttttctcaaTATCAAAGTTATCGACCCAACTCAAAATTTCCTTTC i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1778777 186 + 3286835 I e mm10.chr5 76409566 992 + 151834684 I a score=5361832.000000 s hg38.chr4_KI270787v1_alt 52905 397 + 111943 --------------------aaaggctattgagcacttgtgccagacactgt-tctagaactgg-g---atggcagtgatc---acagacaaaatccctgcctttgaggagtctacattctaggggTTCCCAGATTATCATTTGGGATA-TTTAACATATTTAAGATCATTTAAGATAACTTTGAGATATCTGGAGAGACACACCAAGAAAGGAATGATGAAGCTAT--CAGAATCCTAAA-TCAACAAGAAACCACATCCAGAGA-TGTTTTTTTACACTTA-TTTTTCTAAGGTTCACTAAAACCAAGGCAA------------------------------------------------TT--TTTTTCTTTATTT----CAAAATGA-----------ATGAAAGGCAGAGAAGGCATGCATGCAAGGAATGACATTAGAAATGGCCCGATTAATGTCTCATAAATGTTAACTTTGTGATTCATCTGCT-----------------------------------ACA s panTro5.chr4 119617600 397 - 194502333 --------------------aaaggctattgagcacttgtgccagacactgt-tctagaactgg-g---atggcagtgatc---acagacaaaatccctgcctttgaggagtctacattctaggggCTCCCAGATTATCATTTGTGATA-TTTAACATATTTAAGATCATTTAAGATAACTTTGAGATATCTGGAGAGACACACCAAGAAAGGAATGATGAAGCTAT--CAGAATCCTAAA-TCAACAAGAAACCACATCCAGAGA-TGTTTTTTTACACTTA-TTTTTCTAAGGTTCACTAAAACCAAGGCAA------------------------------------------------TT--TTTTTCTTTATTT----CAAAATGA-----------ATGAAAGGCAGAGAAGGCATGCATGCAAGGAATGACATTAGAAATGGCCCGATTAATGTCTCATAAATGTTAACTTTGTGATTCATCTGCT-----------------------------------ACA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121031008 397 - 195804263 --------------------aaaggctattgagcacttgtgccagacactgt-tctagaactgg-g---atggcagtgatc---acagacaaaatccctgcctttgaggagtctacattctaggggCTCCCAGATTATCATTTGTGATA-TTTAACATATTTAAGATCATTTAAGATAACTTTGAGATATCTGGAGAGACACACCAAGAAAGGAATGATGAAGCTAT--CAGAATCCTAAA-TCAACAAGAAACCACATCCAGAGA-TGTTTTTTTACACTTA-TTTTTCTAAGGTTCACTAAAACCAAGGCAA------------------------------------------------TT--TTTTTCTTTATTT----CAAAATGA-----------ATGAAAGGCAGAGAAGGCATGCATGCAAGGAATGACATTAGAAATGGCCCGATTAATGTCTCATAAATGTTAACTTTGTGATTCATCTGCT-----------------------------------ACA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4462279 397 - 17550833 --------------------aaaggctattgagcacttgtgccagacactgt-tctagaactgg-g---atggcagtgatc---acagacaaaatccctgcctttgaggagtctacattctaggggTTCCCGGATTATCATTTGGGATA-TTTAACATATTTAAGATCACTTAAGATAACTTTGAGATATCCAGAGAGACACACCAAGAAAGGAATGATGAAGCTAT--CAGAATCCTAAA-TCAACAAGAAACCACATCCAGAGA-TGGTTTTTTACACTTA-TTTTTCTAAGGTTCACTAAAACCAAGGCAG------------------------------------------------TT--TTTTTCTTTATTT----CAAAATGA-----------ATGAAAGGCAGAGAAGGCATGCATGCAAGGAATGACATTAGAAATGGCCCGATTAATGTCTCATAAATGTTAACTTTGTGATTCATCTGCT-----------------------------------ACA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69335178 396 - 118206036 --------------------AAAGGCtgttgagcacttgtgcccgacactgt-tctagaactgg-g---atggcagtgatc---acagacaaaatccctgcctttgaggagtctacattctaggggTTCCCAGATTATCATTTGGGATA-TTTAACATATTTAAGATCATTTAAGATATCTTTGAGATATCTGGAGAGACACACCAAGAAAGGAATGATGAAGCTAT--CACAATCCTAAA-TCAACAAGAAACCACATCCAGAGA-T-TTTTTTTACACTTA-TTTTTCTAAGGTTCACTAAAACCAAGGCAA------------------------------------------------TT--TTTTTCTTTATTT----TAAAATGA-----------ATGAAAGGCAGAGAAGACATACATGCATGGAGTGACATTAGAAATGGCCCTATTAATGTCTCATAAATGTTAACTTTGTGATTCATCTGCT-----------------------------------ACA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111538961 420 - 190429646 --------------------aaaggctattgagcacttgtgccagacactgt-tctagcactgg-g---atggcagtgatc---acagacaaaatccctgcctttgagaagtctacattctaggggTTCCCAGATTATCATTTGGGATA-TTTAAAATAT----------TTAAGATATCTTTGAAATATCTGGGGAGACACACCAAGAAAGGAATGATGAAGCTAT--TGGAATCCTAAA-TCAACAAGAAACCACATCCAGAGA-T--TTTTTTACACTTA-TTTTTCTAAGGTTCACTAAAACCAAGGCAA------------------------------------------------TT--TTTTTCTTTATTT----CAAAATGA-----------ATGAAAGGCAGAGAAGGCATGCAGGCATGGAATGACATTAGAAATGGCCTGATAAATGTCTCATAAATGTTAACTTTGTGATTCATctgctactactactattactactactactCCACAATACCAACA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110707100 420 - 189454096 --------------------AAAGGCtattgagcacttgtgccagacactgt-tctagcactgg-g---atggcagtgatc---acagacaaaatccctgcctttgagaagtctacattctaggggTTCCCAGATTATCATTTGGGATA-TTTAAAATAT----------ACAAGATATCTTTGAAATATCTGGGGAGACACACCAAGAAAGGAATGATGAAGCTAT--TGGAATCCTAAA-TCAACAAGAAACCACATCCAGAGA-T--TTTTTTACACTTA-TTTTTCTAAGGTTCACTAAAACCAAGGCAA------------------------------------------------TT--TTTTTCTTTATTT----CAAAATGA-----------ATGAAAGGCAGAGAAGGCATGCAGGCATGGAATGACATTAGAAATGGCCTGACAAATGTCTCATAAATGTTAACTTTGTGATTCATctgctactactactattactactactactCCACAATACCAACA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13275140 420 + 26754465 --------------------aaaggctactgagcacttgtgccagacactgt-tctagcactgg-g---atggcagtgatc---acagacaaaatccctgcctttgagaagtctacattctaggggTTCCCAGATTATCATTTGGGATA-TTTAAAATAT----------TTAAGATATCTTTGAAATATCTGGGGAGACACACCAAGAAAGGAATGATGAAGCTAT--TGGAATCCTAAA-TCAACAAGAAACCACATCCAGAGA-T--TTTTTTACACTTA-TTTTTCTAAGGTTCACTAAAACCAAGGCAA------------------------------------------------TT--TTTTTCTTTATTT----CAAAATGA-----------ATGAAAGGCAGAGAAGGCATGCAGGCATGGAATGACATTAGAAATGGCCTGACAAATGTCTCATAAATGTTAACTTTGTGATTCATctgctactactactattactactactactCCACAATACCAACA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4176414 420 - 5137665 --------------------aaaggctattgagcacttgtgccagacactgt-tctagcactgg-g---atggcagtgatc---acagacaaaatccctgcctttgagaagtctacattctaggggTTCCCAGATTATCATTTGGGATA-TTTAAAATAT----------TTAAGATATCTTTGAGATATCTGGGGAGACACACCAAGAAAGGAATGATGAAGCTAT--TGGAATCCTAAA-TCAACAAGAAACCACATCCAGAGA-T--TTTTTTACACTTA-TTTTTCTAAGGTTCACTAAAACCAAGGCAA------------------------------------------------TT--TTTTTCTTTATTT----CAAAATGA-----------ATGAAAGGCAGAGAAGGCATGCAAGCATGGAATGACATTAGAAATGGCCTGATAAATGTCTCATAAATGTTAACTTTGTGATTCATctgctactactactattactactactactCCACAATACCAACA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122891255 417 - 135778131 --------------------AAAGGCtagtgagcacttgcgccagacactgt-tctagcactgg-g---atggcagtgatc---acagacaaaatccctgcctttgagaagtctacattctaggggTTCCCAGATTATCATTTGGGATA-TTTAAAATAT----------TTAAGATATCTTTGAGATATCTGGGGAGACACAGCAAGAAAGGAATGATGAAGCTAT--TGGAATCCTAAA-TCAACAAGAAACCACATCCAGAGA-T--TTTTTTACACTTA-TTTTTCTAAGGTTCACTAAAACCAAGGCAA------------------------------------------------TT--TTTTTCTTTATTT----CAAAATGA-----------ATGAAAGGCAGAGAAGGCATGCAGGCATGGAATGACATTAGAAATGGCCTGACAAATGACTCATAAATGTTGACTTTGTGATTCATctgctactactactat---tactactactCCACAATACCAACA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1993089 419 + 2427316 --------------------aaaggctattgagcacttgcgccagacactgt-tctagcactgg-g---atggcagtgatc---acagacaaaatccctgcttttgagaagtctacattctaggggTTCCCAGATTATCATTTGGGATA-TTTAAAATAT----------TTAAGATATCTTTGAGATATCTGGGGAGACACACCAAGAAAGGAATGATGAAGCTAT--TGGAATCCTAAA-TCAACAAGAAACCACATCCAGAGA-T--TTTTTTACACTTA-TTTTTCCAAGGTTCACTAAAACCAAGGCAA-------------------------------------------------T--TTTTTCTTTATTT----CAAAATGA-----------ATGAAAGGCAGAGAAGGCATGCAGGCATGGAATGACATTAGAAATGGCCTGATAAATGTCTCATAAATGTTAACTTTGTCATTCATctgctactactactattactactactactCCACAATACCAACA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1286666 420 + 1448899 --------------------aaaggctattgagcacttgtgccagacactgt-tctagcactgt-g---atggcagtgatc---acagacaaaatccctgcctttgagaagtctacattctaggggTTCCCACATTATCATTTGGGATA-TTTAAAATAT----------TTAAGATATCTTTGAGATATCTGGGGAGACACACCAAGAAAGGAATGATGAAGCTAT--TGGAATCCTAAA-TCAACAAGAAACCACATCCAGAGA-T--TTTTTTACACTTA-TTTTTCTAAAGTTCACTAAAACCAAGGCAA------------------------------------------------TT--TTTTTCTTTATTT----CAAAACGA-----------ATGAAAGGCAGAGAAGGCATGCAGGCATGGAATGACATTAGAAACAGCCTGATAAATGTCTCATAAATGTTAACTTTGTGATTCATctgctactactactattactactactactCCACAATACCAACA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53012177 414 - 190850796 --------------------aaaggctattgagcacctgcaccaggcactgc-tctagcactga-ggacatggcagtgatc---acagacagaatccctgcctttgaggagtctat---------attcCCAGATTATCACTTGGGCTA-TTTAAAATATTTAAGATCATTTAAGGTATCTTTAAGGTATCTGGAGAGACACACCAAGAAAGGAATGATGAAGCTAT--CAGAATCCAAAA-TCAACAAGAAACCACATCCAGAGA-T--TTTTTTACACTTA-TTTTT----------CTAAAACCAAGGAAA------------------------------------------------TT--TTTTTCTTTATTT----CAAAATGA-----------ATGAAAGGCAGAGAAAGTATGCAGGCATGGAATGACATTAGAAATGGCCTGATTAATGTCTCACAAATGTTAACTTTGTGGTTCATCTGCTACTGGTACTATTACTACTACTATTCCAGAATACCAACA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8172644 415 - 15139346 --------------------AAAGGCtattgagtgcctgtgccaggcactgt-tctagcactgagggacatggcagtgatc---acagacagaatccctgcctttgaagagtctat---------attcCCAGATTATCACTTGGGATA-TTTAAAATATTTAAGATCATTTAAGATATCTTTAAGGCATCTGGAGAGACACACCAAGAAAGGAATGAGGAAGCTAT--CAGAATCCAAAA-TCAACAAGAAACCACATCCAGATA----TTCTTTACACGTATTTTTT----------CTAAAACCAAGGCAA------------------------------------------------TT--TTTTTCTTTATTT----CAAAATGA-----------ATGAAAGACAGAGAAGGTATGTAAGCATGGAATGACATTAGAAATGGCCTGATTAATGTCTCATAAATGTTAACTTTGTGATTCATCTGCTACTAGTACTATTACTACTACTATTCCACAATACCAACA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6956313 415 - 7304997 --------------------aaaggctactgagcacctgtgccaggcactgt-gctagcactgg-ggacatggcagtgatc---acagacagaatccctgcctttgaagagtctat---------attccCAGATTATCATTTGGGATA-TTTAAAATATTTAAGATCATTTAAGATATCTTTAAGGTATCTGGAGAGACACACCAAGAAAGGAATGATGAAGCTAT--CAGAATCCAAAA-TCAACAAGAAACCACATCCAGATATT--TTTTTTACATGTA-TTTTT----------CTAAAACCAAGGCAA------------------------------------------------TT--TTTTTCTTTATTT----CAAAATGA-----------ATGAAAGACGGAGAAAGTATGCAGGCATGGAATGACATTAGAAATGGCCTGATAAATGTCTCATAAATGCTAACTTTGTGATTCATcttctactagtactattactactactattccataatacCAACA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9374354 424 - 11631747 --------------------aaaggctactgagcacctgtgccaggcactgt-tctagcactgg-ggacatggcagtgatc---acaaacagaacacctgcctttgagaagtctatattctagGGATTCCCAGATTATCATTTGGGATATTTTAAAATATTTAAGATCATTTAAGATATTTTTAAGGTATCCAGAGAGACACACCAAGAAAGGAATGATGAAGCTAT--CAGAATCCAAAA-TCAACAAGAAACCACATCCAGATA-T--TTTTTTACACATA-TTTTT----------CTAAAACCAAGGCAA------------------------------------------------TT--TTTTTCTTTATTT----CAAAATGA-----------ATGAAAGACAGAGAAAGTATGCAGGCATGGAATGACATTAGAAATGGCCTGATTAATGTCTCATAAATGTTAGCTTTGTGGTTCATctgctactagtactattactactactactCCACAATACCAACA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1778963 440 + 3286835 --------------------aaagcctattgagcacttacgtcaggcactgt-tctagcactga-ggacagggcagcgaac---acagacaaaatccttgcctttgaggagtctacattctagGAATTCCCAGAGCATCATTTGGGAAA-TCTGAAATAGTTAGGATCTCTTAAGATATCTTTAAAACATCTGGAGAGACAC--TGAGAAAGGAATGATGATGCTAT--CAGAGTCCTAAA-TCAACAAGAAACCACATCCAAAGA-T--ATTTTTACACTCA-TTTTTCTAAGGTTTACTAAAACTAAGACAATTTTGTTTTGCAGACAAATGATATAATTTTATTTTAGTTGACATGGATTT--TTTTTCTTTATTT----CAAAATTA-----------TTGAAAGGTAGAGATGACATGCAG----AGAATGACATGAGAAAGGGCCTGATTAATGTCTTATAAATGTTAACTTTGTGATTCATctgctgct----------------------------------- i micMur3.chrUn_NW_017968520v1 I 186 I 29 s proCoq1.NW_012140747v1 1867370 390 + 4188776 --------------------aaagcctactgagcacttacgtcaggcactgt-tctagcactga-ggacagggcagcgaac---acagacaaaatcc-cgcttctgaggagtctatattctagggattctgagagcatcacgtgggaaa-tttaaaacaTTTAGGATCATTTAAGCTATCTTCAAAATGTCTGGAGAGACAC--TGAGAAAGGAACGATGGTGCCAC--TGGAGTCCTAAA-TCAACAAGAAACC-CATCCAGAGA-T--TTTTTTACACTTG-TTTTTGTAAGGTTCACTAAAACTAAGGCAA------------------------------------------------TT--TTTTTCTTTATTT----CAAAATTA-----------ATGAAAGGCAGAGATGACATGCAG----AGAATGACATTAGAAAGAGCCTAATTAATGTCTTATAAATGTTAACTTTGAGATTCATCTGCTGCA----------------------------------- i proCoq1.NW_012140747v1 C 0 I 34 s otoGar3.GL873602 8605794 366 + 8790067 --------------------AAAGGCTACTGCGCACT---------CAGTGC-TC-AGGACTGA-GGACTTGGCAGTGAAC---AGAGGGCAGATACTTGCCTTTGAGGAGTCTCCTTTCTAGGGACTCCCAGAGCATCATTTGGGATA-TTTCAAATATTTAGGGTAATTGAAGATATCTTTAAAATGTCTGGAGAAACAC--TGAGAAAGGAATGATGAAACCCT--CAGAGTGCTGAATTCCACAAGAAACCCCATCCAGAGG-T--ATTTTTACACTTA-CTTTTCTAAGGTTCATTAACACTAAGGCAA-------------------------------------------------T--TTTTTCTTTATTT----CACAAATA-----------GTGAAAGGCAGAGAC-------------------CCACTGGAAAGGGTCTGATTAGCATCTCATTAAAGTTAAC-TCGTGATTCATCTGCTGCT----------------------------------- i otoGar3.GL873602 C 0 I 16 s canFam3.chr13 47994771 393 + 63241923 --------------------aatggcccttgagcgcttatgtcaggcactgt-tccagcactgg-agacatggcatggaac---aca----aagtcactgcctttg-gaagtctacattccagGGATTCCCAAATCGTCATTCAGGATA-T-------------------TTAAGATATCTTTAGACTGTCCAGAGAGACAC--TGAGAAAGGAATGACAATGCTAG--CCAAGTTTTAAG-TCAATGAGAACCCCATCCCAGAGA-T----TTTCGTATTCA-TTTTTATAAGGCTCTCTAGAACCAGGGTAA------------------------------------------------TTTGTTTTTCTTTATTT----CAAAATCA-----------ATGAAGGGCAGAGAAGATATGCAGACACTGA-TGATATTTGAAAGGATCTGATTGGTATCTTATAAATGTTAATTTCATGACTCATCTGCTACC------------ACTATTACTCCACAACACCAAA- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4092150 406 - 5279953 ATTCattcactcatccaacagaaacctactgagcgtt--------actctgcatcaggccctga-ggacatggcaatgaacagtacagacaaaatcccggtcttcaaggagtttatgttctagG-ATTCCTAAATCATCAAAATGAAGA-----------------------GAGATAACTTTAGAAAGTCAAAAGAGGCAC--TGAGGAAGAAATGAC-ATCTTATCACAGAGTCCTAAA-TCAACAAGAAACTCTGTTAGGAGA-T--TTTCTTGCCCTCA-TTTTTCTAAGGCTTACTAGAACCGGGACAT------------------------------------------------TT--TTTTTTTTTCTTTACCGCAAAATCAAATTGGGGGCCATGGAAGGCAGAAAAGACAAGTAAGTACTGAATGATATTAGAAATAG------------CTCATTAGTGTCAATTTCATGATTCATCTACTGCT---------------------CCACAATACCAAA- i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76409566 992 + 151834684 I a score=110129.000000 s hg38.chr4_KI270787v1_alt 53302 8 + 111943 TTGCATTA s panTro5.chr4 119617997 8 - 194502333 TTGCATTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121031405 8 - 195804263 TTGCATTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4462676 8 - 17550833 TTGCATTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69335574 8 - 118206036 TTGCATTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111539381 8 - 190429646 TTGCATTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110707520 8 - 189454096 TTGCATTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13275560 8 + 26754465 TTGCATTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4176834 8 - 5137665 TTGCATTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122891672 8 - 135778131 TTGCATTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1993508 8 + 2427316 TTGCGTTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1287086 8 + 1448899 TTGCATTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53012591 8 - 190850796 TTGCCTTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8173059 8 - 15139346 TTGCATTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6956728 8 - 7304997 TTTTATTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9374778 8 - 11631747 TTGCATTA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1779432 8 + 3286835 ctgcatta i micMur3.chrUn_NW_017968520v1 I 29 C 0 s otoGar3.GL873602 8606176 8 + 8790067 TTGCACCC i otoGar3.GL873602 I 16 C 0 s canFam3.chr13 47995164 8 + 63241923 ATGTATTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4092556 8 - 5279953 CTGCATTA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1867760 34 + 4188776 I e mm10.chr5 76409566 992 + 151834684 I a score=1633532.000000 s hg38.chr4_KI270787v1_alt 53310 102 + 111943 AATACCCATAGATACCAGGGTCCACTTTGA-TATTTGTTTCTTGTGTCATATGTAATAAAAGAAGTCATGTTCTCTATTCCACACAGACACTCCATGTAGCTG s panTro5.chr4 119618005 102 - 194502333 AATACCCATAGATACCAGGGTCCACTTTGA-TATTTGTTTCTTGTGTCATATTTAATAAAAGAAGTCATGTTCTCTATTCCACACAGACACTCCATGTAGCTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121031413 102 - 195804263 AATACCCATAGATACCAGGGTCCACTTTGA-TATTTGTTTCTTGTGTCATATTTAATAAAAGAAGTCATGTTCTCTATTCCACACAGACACTCCATGTAGCTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4462684 102 - 17550833 AATACCCATAGATACCAGGGTCCACTTTGA-TATTTGTTTCTTGTGTCATATTTAATAAAAGAAGTCATGTTCTCTATTCCACACAGACACTCCATGTAGCTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69335582 102 - 118206036 AATACCCATAGATACCAGGATCCACTTTGA-TATTTGTTTCTTGTGTCATATTTAATAAAAGAAGTCACGTTCTCTATTCCACATAGACACTCCATGCAGCTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111539389 102 - 190429646 AATACCCATAGATACCAGGGTCCACTTTGA-TATTTGTTTCTTGTGTTATATTTAATAAAAGAAGTTATGTTCTCTATTCCACACAGACACTCCATGTAGCTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110707528 102 - 189454096 AATACCCATAGATACCAGGGTCCACTTTGA-TATTTGTTTCTTGTGTTATATTTAATAAAAGAAGTTATGTTCTCTATTCCACACAGACACTCCATGTAGCTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13275568 102 + 26754465 AATATCCATAGATACCAGGGTCCACTTTGA-TATTTGTTTCCTGTGTTATATCTAATAAAAGAAGTTATGTTCTCTATTCCACACAGACACTCCATGTAGCTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4176842 102 - 5137665 AATACCCATAGATACCAGGGTGCACTTTGA-TATTTGTTTCTTGTGTTATATTTAATAAAAGAAGTTATGTTCTCTATTCCACACAGACACTCCATGTAGCTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122891680 102 - 135778131 AATACCCATAGACACCAGGGTCCACTTCGA-TATTTGTTTCTTGTGTTATATTTAATAAAAGAAGTTATGTTCTGTATTCCACACAGACACTCCACGTAGCTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1993516 102 + 2427316 AATACCCATAGATACCAGGGTGCACTTTGA-TATTTGTTTCTTGTGTTATATTTAATAAAAGAAGTTATGTTCTCTATTCCACACAGACACTCCATGTAGCTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1287094 102 + 1448899 AATACCCATAGATACCAGGGTCCACTTTGA-TATTTGTTTCTTGTGTTATATTTAATAAAAGAAGTTATGTTCTCTATTCCACACAGACACTCCATGTAGCTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53012599 98 - 190850796 AATATCC----ATACCAGGGACCACTCTGA-TATTTGCTTCTTGTGTCGTATTTAATAAAAGAAGTCATGTTCTCTATTCTACACAGACAATCGATGTAGCTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8173067 102 - 15139346 AATATCCATAGATACCAGGGTCCACTTTGA-CATTTGTTTCTTGTGTCATATTTAATAAAAGAAGTCGTGTTCTCTATTCTACACAGACACTCCACGTAGCTG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6956736 102 - 7304997 AATATCCATAGATACCAGGGTTCACTCTGATTATTTGTTTCTTGTGTCATA-TTAATAAAAGAAGTCATGTTCTCTATTCTACACAGACACTCCACGAAACTG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9374786 102 - 11631747 AATATCCATAGATACCAGGGTCCACTCTGA-TATTTGTTTCTTGTGTCATATTTAATAAAAGAAGTCATGTTCTCTATTCTACACAGACACTCCATGTAGCTG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1779440 102 + 3286835 tatactactaGATACCAGGGTCCACTTTGG-TATTTATTTCTTATGTCATATTTAATAAAAGAAGTCATAGTCTCCATTCCACACAGACACTCCATGTAGCTG i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1867794 102 + 4188776 AATACCACTAGATACTGGGGTCCACTTTGG-TATTTATTTCTTGTGTCATAGTTAATAAAAGAAATCATAGTCTCCATTCCACACAGACACTCCATGTAGCTG i proCoq1.NW_012140747v1 I 34 C 0 s otoGar3.GL873602 8606184 95 + 8790067 TGTACCACTGGACACCAGGGTCCATGTTGG-TGTTTACTTCTTGTGTCACATTTAATAAACGAAGTCATGGTCTC-------CACAGACATTCCATGTAGCTG i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47995172 102 + 63241923 TACACCAGTAGACACCAGGGTTCACTTTGG-TAATTATTTCTTGTGTCATATTTAATAAAAGAAGTCATATTCTTCATCCCACACAGACACTCCATGTAACTG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4092564 102 - 5279953 CATACCAGCAGATACCAGGGCCCATTTTGA-TAATAATTTCTTGTGCCATATTTAATAAAAGAAGTAATGTTCTTCATTCTATACAGGCATCCCATGTATCCA i dasNov3.JH568349 C 0 I 379 e mm10.chr5 76409566 992 + 151834684 I a score=72277.000000 s hg38.chr4_KI270787v1_alt 53412 5 + 111943 CAATT- s panTro5.chr4 119618107 5 - 194502333 CAATT- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121031515 5 - 195804263 CAATT- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4462786 5 - 17550833 CAATT- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69335684 5 - 118206036 CAATT- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111539491 5 - 190429646 CAATT- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110707630 5 - 189454096 CAATT- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13275670 5 + 26754465 CAATT- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4176944 5 - 5137665 CAATT- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122891782 5 - 135778131 CAATT- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1993618 5 + 2427316 CAATT- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1287196 5 + 1448899 CAATT- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53012697 6 - 190850796 CAATTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8173169 5 - 15139346 CAATT- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6956838 5 - 7304997 CAATT- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9374888 5 - 11631747 CAATT- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1779542 5 + 3286835 AAATT- i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1867896 5 + 4188776 AAATT- i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8606279 5 + 8790067 CAATT- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47995274 5 + 63241923 CAATT- i canFam3.chr13 C 0 C 0 e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4092666 379 - 5279953 I a score=2852751.000000 s hg38.chr4_KI270787v1_alt 53417 184 + 111943 GCAGTTCTTATTCTGGTCGTCTCTTGACCTTAAAACTTCTAAAGGCTTTGGAGAAGAGTTTAGAGTGGCCCAAACTATAAAGAAAATTGAATTTAGCAAGCAATTCCCAAGAGTCTCC--AAAGTTCATTTATGTAATTGC-CAATGCAGAATCATTTTTAAATCTTGAACAGAAACCTCCTTTTGC s panTro5.chr4 119618112 184 - 194502333 GCAGTTCTTATTCTGGTCTTCTCTTGACCTTAAAACTTCTAAAGGCTTTGGAGAAGAGTTTAGAGTGGCCCAAACTATAAAGAAAATTGAATTTAGCAAGCAATTCCCAAGAGTCTCC--AAAGTTCATTTATGTAATTGC-CAATGCAGAATCATTTTTAAATCTTGAACAGAAACCTCCTTTTGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121031520 184 - 195804263 GCAGTTCTTATTCTGGTCTTCTCTTGACCTTAAAACTTCTAAAGGCTTTGGAGAAGAGTTTAGAGTGGCCCAAACTATAAAGAAAATTGAATTTAGCAAGCAATTCCCAAGAGTCTCC--AAAGTTCATTTATGTAATTGC-CAATGCAGAATCATTTTTAAATCTTGAACAGAAACCTCCTTTTGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4462791 184 - 17550833 GCAGTTCTTATTCTGGTCTTCTCTTGACCTTAAAACTTCTAAAGGCTTTGGAGAAGAGTTTAGAGTGGCCCAAACTATAAAGAAAATTGAATTTAGCAAGCAATTCCCAAGAGTCTCC--AAAGTTCATTTATGTAATTGC-CAATGCAGAATCATTTTTAAATCTTGAACAGAAACCTCCTTTTGC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69335689 184 - 118206036 GCAGTTCTTATTCTGGTCTTCTCTTGACCTTAAAACTTCTAAAGCCTTTGGAGAAGAGTTTAGAGTGGCCCAAACTATAAAGAAAATTGAATTTAGCAAGCGATTTCCAAGACTCTCC--AAAGTTCATTTATATAATTGC-CAATGCAGAATCATTTTTAAATCTTGAACAGAAACCTCTTTTTGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111539496 184 - 190429646 GCAGTTCTTATTCTGGTCTTCCCTTGACCTTAAAACTTCTAAAGGCTTTGGAGAAGAATTTAGAGTGGCCCAAACTATAAAGAAAATTGAATTTAGCAATAAATTCCCCAGACTCTCC--AAATTTCTTTTATATAATTGC-CAATGCAGAATCATTTTTAAATCTTGAACAGAAACCTCCTTTTGC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110707635 184 - 189454096 GCTGTTCTTATTCTGGTCTTCCCTTGACCTTAAAACTTCTAAAGGCTTTGGAGAAGAATTTAGAGTGGCCCAAACTATAAAGAAAATTGAATTTAGCAATAAATTCCCCAGACTCTCC--AAATTTCTTTTATATAATTGC-CAATGCAGAATCATTTTTAAATCTTGAACAGAAACCTCCTTTTGC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13275675 184 + 26754465 GCAGTTCTTATTCTGGTCTTCCCTTGACCTTAAAACTTCTAAAGGCTTTGGAGAAGAATTTAGAGTGGCCCAAACTATAAAGAAAATTGAATTTAGCAATAAATTCCCCAGACTCTCC--AAATTTCTTTTATATAATTGC-CAATGCAGAATCATTTTTAAATCTTGAACAGAAACCTCCTTTTGC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4176949 184 - 5137665 GCAGTTCTTATTCTGGTCTTCCCTTGACCTTAAAACTTCTAAAGGCTTTGGAGAAGAATTTAGAGTGGCCCAAACGATAAAGAAAATTGAATTTAGCAATAAATTCCCCAGACTCTCC--AAAGTTCTTTTATATAATTGC-CAATGCAGAATCATTTTTAAATCTTGAACAGAAACCTCCTTTTGC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122891787 184 - 135778131 GCAGTTCTTATTCTGGTCTTCCCTTGACCTTAAAACTTCTAAAGGCTTTGGAGAAGAGTTTAGAGTGGCCCAAACTATAAAGATAATTGAATTTAGCAAGAAATTCCCCAGACTCTCC--AAAGTTCTTTTATATAATTGC-CAATGCAGAATCATTTTTAAATCTTGAACAGAAACCTCCTTTTGC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1993623 184 + 2427316 GCAGTTCTTATTCTGGTCTTCCCTTGACCTTAAAACTTCTAAAGGCTTTGGAGAAGAGTTTAGAGTGGCCCAAACTATAAAGAAAATTGAATTTAGCAAGAAATTCCCCAGACTCTCC--AAAGTTCTTTTATATAATTGC-CAATGCAGAATCATTTTTAAATCTTGAACAGAAACCTCCTTTTGC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1287201 184 + 1448899 GCAGTTCTTATTCTGGTCTTTCCTTGACATTAAAACTTCTAAAGGCTTTGGAGAAGAGTTTAGAGTGGCCCAAACTATAAAGAAAATTGAATTTAGCAAGAAATTCCCCAGACTCTCC--AAAGTTCTTTTATATAATTGC-CAGTGCAGAATCATTTTTAAATCTTGAACAGAAACTTCCTTTTGC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53012703 169 - 190850796 ACAGGTCTTATTCAGGTCTTCCCTTGACCTTAAAACTTCTAAAGGC-TTGGAGAAGAGTTTACAGTGGCCCAAAGTATAAAGAAAACTGAGTTTAGCAAGCAATTCCCGAGACTGTCC--AAAGTTCATTTGTATAATTGC-CAA-----------TCTTAAATCTTGAACAGAAACC---CTTTGC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8173174 184 - 15139346 GCAGGTCTTATTCAGGTCTTCCCTTGACCTTAAAACTTCTAAAGGCTTTGGAGAAGAGTTTAGAGTGGCCCAAACTATAAAGAAAATTGAATTTAGCAAGCAACTCCCAAGACTCTCC--AAAGTTCATTTATATAATTGC-CAAAGCAGAATCATTCTTAAATCTTGAACAGAAATCTTATTTTGC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6956843 186 - 7304997 GCAGGTCTTATTCAGGTCTTCCCTTGATCTTAAAACTTCTAAAGGCTTTGGAGAAGAGTTTAGAGTGGCCCAAACTATAAAGAAAATTGAATTTAGCAAGCAATTCCCAAGACTCTCCAGAAAGTTCATTTATATAATTGC-CAAAGCAGAATCATTCTTAAATCTTGAACAGAAACCTTATTTTGC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9374893 184 - 11631747 GCAGGTCTTATTCAGGTCTTCCCTTGACCTTAAAACTACTAAAGGCTTTGGAGAAGAGTTTGGAGTGGCTCAAACTATAAAGAAAATTGAATTTAGCAAGCAATTCCCAAGACTGTCC--AAAGTTCATTTATATAATTGC-CAAAGCAGAATCATTCTTAAATCTTGAACAGAAACCTTATTTTGC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1779547 185 + 3286835 GCAATTCTTATTCTGGCCTTCCCTTGACCTCAAAACTTCCAAAGCCTTTGGAGAAGAATTTAGAGTGGCCCAAACTACAAAAAAAATTGAATTTAGCAAACCATTTCCAAGATTCTCC--AATGTTCATTTATATAACTGAGCAATATAGAATCATTCTTGAATAGCGAACAGAAACTTTCTTTTGC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1867901 185 + 4188776 GCAATTCTTATTCTGGCCTTCCCTTGACCTCAAAACTTCCAAAGGTTTTGGAGAAGAATTTAGAGTGGCCCAAACTACGAAGGAAATTGAATTTAGCAAACCATTTCCAAGATTCTCC--AATGTTCATTTATATAACTGAGCAATACAGAATCATTCTTGAATATTGAACAGAAACTTTCTTTTGC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8606284 178 + 8790067 GTAACTCTTATTCTGGCCTTCCCTTTATCTCAAAACTTCCAAAGGCTCTGGAGAACAGTTTAGAGTGGCCCAAATTGTAAAGGAAATTGGATTTAGCAAACCGTTCCTAAGATTCTCC--AATGTTCATTTATATAATTGAGCAATGTAGA---ATTCTTGAATATCAAACAGAAA----CCTTTGT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47995279 182 + 63241923 GCAATTCTTACTCTGGCCTTCCTTTGACCCCCACATTTCCAAAGGCTTTGGAGAAGAGTTTAGACTGGTCAAAACTATAAAGAAAATTGAATTTGGCAAGCCATTTCCAAGAATCTCC--AAAGTTTGTTTATATAATTGAGCAATGTAGAATCATTCTTGAATATCAAACAGAAAAC---TTCTGT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4093045 185 - 5279953 GCAATTCTTATTCTAGCTCTCCCTGGACCCCAAAACTCCCAAAGACTTTACAGAAGAGTTTAATGTAAACAAAATTATAGAGGAAATTGAATTTAGCAAGACATTTCCAAGACTCTCC--TAAGTTCCTTTATATAATTGAGCAATGCAGGATCATTCTTGAATATCAAACAGAAGTCTTCTTTTGC i dasNov3.JH568349 I 379 I 904 e mm10.chr5 76409566 992 + 151834684 I a score=854090.000000 s hg38.chr4_KI270787v1_alt 53601 72 + 111943 TTTCACA-TTTTTT---TCC-------------------TAAGTATAGAATAAAAATCAATTAGGAATAATTGTCTTCAGATTTGGTATGATACT s panTro5.chr4 119618296 71 - 194502333 TTTCACA-TTTTTT---CCC--------------------AAGTATAGAATAAAAATCATTTAGGAATAATTGTCTTCAGATTTGGTATGATACT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121031704 71 - 195804263 TTTCACA-TTTTTT---CCC--------------------AAGTATAGAATAAAAATCATTTAGGAATAATTGTCTTCAGATTTGGTATGATACT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4462975 72 - 17550833 TTTCACA-TTTTTT---TCC-------------------TAAGTATAGAATAAAAATCAATTAGGAATAATTGTCTTCAGATTTGGTACGATACT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69335873 72 - 118206036 CTTCACA-TTTTTT---CCC-------------------TAAGTATAGAATAAAAATCAATTAGGAATAATTGTCTTCAGATTTGGTATGATACT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111539680 72 - 190429646 CTTCACA-TTTTTT---CCC-------------------CAAGTATAGAGTAAAAATCAATTAGGAATAATTGTCTTCAGATTTGGTACAGTACT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110707819 72 - 189454096 CTTCACA-TTTTTT---CCC-------------------CAAGTATAGAGTAAAAATCAATTAGGAATAATTGTCTTCAGATTTGGTACAGTACT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13275859 72 + 26754465 CTTCACA-TTTTTT---CCC-------------------CAAGTATAGAGTAAAAATCAATTAGGAATAATTGTCTTCAGATTTGGTACAGTACT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4177133 72 - 5137665 CTTCACA-TTTTTT---CCC-------------------CAAGTATAGAATAAAAATCAATTAGGAATAATTGTCTTCAGATTTGGTATGGTACT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122891971 72 - 135778131 CTTCACA-TTTTTT---CCC-------------------CAAGTATAGAGTAAAAATCAATTAAGAATAATTGTCTTCAGATTTGGTATGGTACT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1993807 72 + 2427316 CTTCACA-TTTTTT---TCC-------------------TAAGTATAGAATAAAAATCAATTAGGAATAATTGTCTTCAGATTTGGTATGGTACT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1287385 72 + 1448899 CTTCACA-TTTTTT---TCC-------------------TAAGTATAGAATAAAAATCAATTAGGAATAATTGTCTTCAGATTTGGTATGGTACT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53012872 71 - 190850796 CCTCATA-CTTTTTTG-----------------------AAAGTATAGAATAAAAATCAATTAGGGATAATTGTCTTCAGATTTGGTATGATACT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8173358 75 - 15139346 CCTCACA-TTTTTTTTTTCC-------------------TAAGTATAGGATAAAAATCAATTAGGGATAATTGTCTTCAGATTTGGTATGAAACT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6957029 74 - 7304997 CCTCACA-TTTTTTTT-TCC-------------------TAAGTATAGAATAAAAATCAACTAGGGATAATTGTCTTCAGATTTGGTATGATACA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9375077 73 - 11631747 CCTCA-A-TTTTTTTT-CCC-------------------TAAGTATAGAATAAAAATCAATTAGGGATAATTGTCTTCAGATTTGATATGATACT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1779732 76 + 3286835 ACTCACAATTTGTT---TCCT----------------TTTAAGTATAGAATAAAAGTCATCTGGGGATAATTGTCTTGAAATTTGGAATCATAAT i micMur3.chrUn_NW_017968520v1 C 0 I 16 s proCoq1.NW_012140747v1 1868086 76 + 4188776 ACTCACAATTTTTT---TCCT----------------TTTAAGTATAGAATAAAAATCGGCTTGGGATAATTGTCTTGAGATTTGGTATCATAAT i proCoq1.NW_012140747v1 C 0 I 1 s otoGar3.GL873602 8606462 72 + 8790067 AGTCACA---TTTT---TCCT----------------TCTAAGTATAGAATAAAAATCAACAAGGGATCATTGTCTTGAGA-TTGGCATCATAGT i otoGar3.GL873602 C 0 I 1 s canFam3.chr13 47995461 89 + 63241923 ACCCACA-TTTTTT---TCATTTTATTTTTTCTTCCCTTTAAAGATAGGAT--AAGTCTATTATAGATTATTGTCTTGAGATTTGGTATCATATT i canFam3.chr13 C 0 C 0 e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I a score=277728.000000 s hg38.chr4_KI270787v1_alt 53673 21 + 111943 GATCTAAAGATTCAAATAAGC s panTro5.chr4 119618367 21 - 194502333 GATCTAAAGATTCAAATAAGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121031775 21 - 195804263 GATCTAAAGATTCAAATAAGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4463047 21 - 17550833 GATCTAAAGATTCAAATAAGC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69335945 21 - 118206036 GATCTAAAGATTCAAATAAGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111539752 21 - 190429646 GATCTAAAGCTTCAAATAAGC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110707891 21 - 189454096 GATCTAAAGCTTCAAATAAGC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13275931 21 + 26754465 GATCTAAAGCTTCAAATAAGC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4177205 21 - 5137665 GATCTAAAGCTTCAAATAAGC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122892043 21 - 135778131 GATCTAAAGCTTCAAATAAGC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1993879 21 + 2427316 GATCTAAAGCTTTAAATAAGC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1287457 21 + 1448899 GATCTAAAGATTCAAATAAGC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53012943 21 - 190850796 GCTCTAAAGATTCAAATGAGC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8173433 21 - 15139346 GATCTAAAGATTCAAATAAGC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6957103 21 - 7304997 GATCTAAAGATTCAAATAAGC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9375150 21 - 11631747 GATCTAAAGATTCAAATCAGC i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1868163 21 + 4188776 GACTCAAAGATTCAGGTAAGC i proCoq1.NW_012140747v1 I 1 C 0 s otoGar3.GL873602 8606535 21 + 8790067 GACCTAATGATTCAGGTAAGT i otoGar3.GL873602 I 1 C 0 s canFam3.chr13 47995550 21 + 63241923 GACCTAAAGATTCAGGTAAAC i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1779808 16 + 3286835 I e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I a score=2050479.000000 s hg38.chr4_KI270787v1_alt 53694 145 + 111943 ATCAACCCTGAAACAGCTTTGGGAAAACCTACTTTAACCC-TGTAGTA--AGGAGATCTTGCATTG--GAATGAGAAAATTAGCAATTTTGAGTGCCCCCTTATATTGTCAACATTTTGACCAAGGCGAGTGTTATTGAAAACACTACCA s panTro5.chr4 119618388 147 - 194502333 AACAACCCTGAAACAGCTTTGGGAAAACCTACTTTAACCC-TGTAGTACCAGGAAGTCTTGCATTG--GAATGAGAAAATTAGCAATTTTGAGTGCCCCCTTATATTGTCAACATTTTGACCAAGGCGAGTGTTATTGAAAACACTACCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121031796 147 - 195804263 AACAACCCTGAAACAGCTTTGGGAAAACCTACTTTAACCC-TGTAGTACCAGGAAGTCTTGCATTG--GAATGAGAAAATTAGCAATTTTGAGTGCCCCCTTATATTGTCAACATTTTGACCAAGGCGAGTGTTATTGAAAACACTACCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4463068 146 - 17550833 ATCAACCCTGAAACAGCTTTGGGAAAACCTACTTTAACCC-TGTAGTACCAGGAGATCTTGCATTG--GAATGAGAAAATTAGCAATTTTGAGTGCCCCCTTATATTGTCAACATTTTGACCAAGTCGA-TGTTATTGAAAACACTACCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69335966 147 - 118206036 ATCAACCCTGAAACAGCTTTGGGAAAACCTACTTTAACCC-TGTAGTACCAGGAGATCTTGCATTG--GAATGAGAAAATCAGCAATTTTGAGTGCCCCCTTATATTGTCAACATTTTGACCAAGGCGAGTGTCATTGAAAACACTACCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111539773 147 - 190429646 ATCAACCCTGAAACAGCTTTGGGAAAACCTACTTTGACCC-TGTAGTACCAGGAGATCTTGCATTG--GAATGAGAAAATAAGCAATTTTGAGTGCCCCCTTATATTGTCAACATTTTGACCAAGGTGAGCGCTATTGAAAACACTATCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110707912 147 - 189454096 ATCAACTCTGAAACAGCTTTGGGAAAACCTACTTTGACCC-TGTAGTACCAGGAGATCTTGCATTG--GAATGAGAAAATGAGCAATTTTGAGTGCCCCCTTATATTGTCAACATTTTGACCAAGGTGAGCGCTATTGAAAACACTATCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13275952 147 + 26754465 ATCAACTCTGAAACAGCTTTGGGAAAACCTACTTTGACCC-TGTAGTACCAGGAGATCTTGCATTG--GAATGAGAAAATGAGCAATTTTGAGTGCCCCCTTATATTGTCAACATTTTGACCAAGGTGAGCGCTACTGAAAACACTATCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4177226 147 - 5137665 ATCAACCCTGAAACAGCTTTGGGAAAACCTACTTTGACCC-TGTAGTACCAGGAGATCTTGCATTG--GAATGAGAAAATGAGCAATTTTGAGTGCCCCCTTATATTGTCAACATTTTGACCAAGGTGAGCGCTATTGAAAACACTATCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122892064 147 - 135778131 ATCAACCCTGAAACAGCTTTGGGAAAACCTACTTTGACCC-TGTAGTACCAGGAGATCTTGCACTG--GAATGAGAAAATGAGCAATTTTGAGTGCCCCCTTATATTGTCAACATTTTGACCAAGGTGAGCGTTATTGAAAACACTATCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1993900 147 + 2427316 ATCAACCCTGAAACAGCTTTGGGAAAACCTACTTTGACCC-TGTAGTACCAGGAGATCTTGCATTG--GAATGAGAAAATGAGCAATTTTGAGTGCCCCCTTATATTGTCAACATTTTGACCAAGGTGAGCGCTATTGAAAACACTATCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1287478 147 + 1448899 ATCAACCCTGAAACAGCTTTGGGAAAACCTACTTTGACCC-TGTAGTACCAGGAGATCTTGCACTG--GAATGAAAAAATGAGCAATTTTGAGTGTCCCCTTATATTGTCAACATTTTGACCAAGGTGAGCGTTATTGAAAACACTATCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53012964 147 - 190850796 ATCAACCCTGAAACAGCTTTGGGAAAACCTGCTTTGACCC-TGTAGTAATAGGAGATCTTGCACTG--GAATGAGAAAATTAGCAATTTTGCATGCTCTCTTATATTGTCAACATTATGACCAAGGCAAGCATTACTGAAAACATTACCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8173454 147 - 15139346 ATCAACCCTGAAACAGTTTTGGGAAAACCTACTTTGACCT-TGTAGTACTAGGAGACCTTGCACTG--GAGTGAGAAAATTAGCAATTTTGTGTGCTGTCTTATACTGTCAACATTCTGACCAAGGCAAGCATTATTGAAAACATTACCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6957124 147 - 7304997 ATCAACCCTGACACAGTTTTGGGAAAACCTACTTTGACCT-TGTAGCACTAGGAGATCTTGCACCG--GAATGAGAAAATTAGCAATTTTGCGTGCTGTCTTATATTGTCAACATTCTGACCAATGCGAGCATTATTGAAAACATTACCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9375171 149 - 11631747 ATCAACCCTGAAACAGCTTTGCGAAAACCTACTTTGACCC-TGTAGTACTAGGAGATCTTGCACTGATGAATGAGAAAATTAGCAATTTTGCGTGCTGTCTTATATTGTCAACATTCTGACCAAGGCGAGCATTATTGAAAACATTACCA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1779824 148 + 3286835 GTCAACTCCAAAACAGCTTTGGGAAGATCTGCTTTGACCCCTGTAGTACCAGGATGCCTTGCATTG--GGATGAGAGCATTAACAATTTTGACTGCACCCTTATACTGTCAACATTTTGACCAAGACCAGTGTTATAAAAAACATTACCA i micMur3.chrUn_NW_017968520v1 I 16 C 0 s proCoq1.NW_012140747v1 1868184 148 + 4188776 ATCAACTTCAAAACAGCTTTGAGAAAATCTGCTTTGACCCCTGTAGTACCAGAAGGCCTTGCATTG--GGATGAGAACATTAGCAATTCTGACTGTACCTTTATATGGTCAACATTTTGACCAAGGCCAGTGTTACAGAAAATATTACCA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8606556 147 + 8790067 GTCGACTCCAAAACAGAGTTGGGGA-ATCTGCTGTGACCCACATAATACCAAGACACCATACACAG--GGGTGAGAAAATTAGCAATTTTGACTGTACTCTTATACTGTTGACATTTTGACCAAGGCCAGTGTTACAGAAAACACCACCA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47995571 146 + 63241923 GTGAACCCTAAAACAATTCTG-GAAAATCGACTTTGACCTCTGCAGTACCAAGAAATTTTGCACTG--GAATGAGAAAATTAGCAATTTTGAATGTCACCTCATTTTGTCAACATTTTGACC-AGGCCAGTGTGACAGAAAATATTACCA i canFam3.chr13 C 0 I 288 e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I a score=401503.000000 s hg38.chr4_KI270787v1_alt 53839 29 + 111943 AACTGGAGGTGCCTTTATTTATATGTAGT s panTro5.chr4 119618535 29 - 194502333 AACTGGAGGTGCCTTTATTCATATGTAGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121031943 29 - 195804263 AACTGGAGGTGCCTTTATTCATATGTAGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4463214 29 - 17550833 AACTGGAGGTGCCTTTATTCATATGTAGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69336113 29 - 118206036 AACTGGAGGTGCCTTTATTCATATGTAGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111539920 29 - 190429646 ACCTGGAGGTGCCTTTATTCATATGCAGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110708059 29 - 189454096 ACCTGGAGGTGCCTTTATTCATACGCAGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13276099 29 + 26754465 ACCTGGAGGTGCCTTTATTCATATGCAGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4177373 29 - 5137665 ACCTAGAGGTGCCTTTATTCATATGCAGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122892211 29 - 135778131 ACCTGGACGTGCCTTTATTCATATGCAGT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1994047 29 + 2427316 ACCTGGAGGTGCCTTTATTCATATGCAGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1287625 29 + 1448899 ACCTGGAGGTGCCTTTATTCATATGCAGT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53013111 29 - 190850796 ACCTGGAGGTGCCTTTGTTCATATGTAGT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8173601 29 - 15139346 ACCTGGAGGTGCCTGTATTCATATGTAGT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6957271 29 - 7304997 ACCTGGAGGTGCCTTTATTCATATGTAGT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9375320 29 - 11631747 ACCTGGAGGTGCCTTTATTCATATGTAGT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1779972 29 + 3286835 ACCTGGATGTGCCTTTATGCATTTGTAGT i micMur3.chrUn_NW_017968520v1 C 0 I 19 s proCoq1.NW_012140747v1 1868332 29 + 4188776 ACCTGGATATGCCTTTATTCATTTGTAGT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8606703 26 + 8790067 ACCAGGATG---CTTTATACACTTATATT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47996005 29 + 63241923 AGCTGGAAGTACTTTTACTCACTTGTAGT i canFam3.chr13 I 288 C 0 e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I a score=225098.000000 s hg38.chr4_KI270787v1_alt 53868 22 + 111943 TATGTTTGTT---GCTTTTAAAAAT s panTro5.chr4 119618564 21 - 194502333 TATGTTCGTT---G-TTTTAAAAAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121031972 21 - 195804263 TATGTTCGTT---G-TTTTAAAAAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4463243 22 - 17550833 TATGTTTGTT---GCTTTTAAAAAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69336142 22 - 118206036 TATGTTTGTT---GCTTTTAAAAAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111539949 22 - 190429646 TATGTTTGTT---GCTTTTAAAAAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110708088 22 - 189454096 TATGTTTGTT---GCTTTTAAAAAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13276128 22 + 26754465 TATGTTTGTT---GCTTTTAAAAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4177402 22 - 5137665 TATGTTTGTT---GCTTTTAAAAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122892240 22 - 135778131 TATGTTTGTT---GCTTTTAAAAAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1994076 22 + 2427316 TATGTTTGTT---GCTTTTAAAAAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1287654 22 + 1448899 TATGTTTGTT---GCTTTTAAAAAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53013140 22 - 190850796 TATGTTTGTT---GCTTTTAAAAAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8173630 22 - 15139346 TATGTTTGTT---GCTTTTAAAAAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6957300 22 - 7304997 TATGTTTGTT---GCTTTTAAAAAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9375349 22 - 11631747 TATGTTTGAT---GCTTTTAAAAAT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1868361 25 + 4188776 TATAGTTGCTGGATTTTTTTTATAT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8606729 21 + 8790067 TATGGTCGC----ATTTTTTTGTAT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47996034 16 + 63241923 ----TTTATT---TTTTTTAAAT-- i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1780001 19 + 3286835 I e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I a score=7298823.000000 s hg38.chr4_KI270787v1_alt 53890 519 + 111943 CTAGACACATTCTTGCCATGC-AAAGGAATAATTCAGACATTTAAATGCTGAGACTCTTGCCCTCAGTACTAAAGTATAAATAAAGAGAACTTCTCTGCTCTGCTCTCCCCACCTACCTCTGCTAGTCAGA-TTCTTCCAACACCCCATCCTCTCTTCAGAAATACGTATGAGTGCACACAGAGCAGAGACCAGATTTATGACTATAAATGGAATTTGCTGACCTGGATTTGGGTTTTGTGAGGATAAAAGAGAGAGATTACATTAGGCAC--------------AAGGAAGAGAAGGCAGTGAAAAAGGGAGAGAGAAGCGAAGAACTTTCATATATTAAAAAGGAGCAGAAGAGAGTGATGGAAACTGGACCAATGGGAGGGA------GAGAAGAAAGTAACACTGAAAGGAAATATTATTGAGGAAACTGTGACCAGAAAATTGTTATGGATTATTGTCAACCTTCCTTTTTTCCCAAAGCATTTGGTGTTACTTCCTTATACAAGTAGTCCAAGAACTCACATTCTGGCATTTAAA s panTro5.chr4 119618585 519 - 194502333 CTAGACACATTCTTGCCATGC-AAAGGAATAATTCAGACATTTAAATCCTGAGACTCTTGCCCTCAGTACTAAAGTATAAATAAAGAGAACTTCTCTGCTCTGCTCTCCCTACCTACCTCTGCTAGTCAGA-TTCTTCCAGCACCCCATCCTCTCTTCAGAAATACGTATGAGTGCACACAGAGCAGAGACCAGATTTATGACTATAAATGGAATTTGCTGACCTGGATTTGGGTTTTGTGAGGATAAAAGAGAGAGATTACATTAGGCAC--------------AAGGAAGAGAAGGCAGTGAAAAAGGGAGAGAGAAGCGAAGAGCTTTCATATATTAAAAAGGAGCAGAAGAGAGTGATGGAAACTGGACCAATGGGAGGGA------GAGAAGAAACTAACACTGAAAGGAAATATTATTGAGGAAACTGTGACCAGAAAATTGTTATGGATTATTGTCAACCTTCCTTTTTTCCCAAAGCATTTGGTGTTACTTCCTTATACAAGTAGTCCAAGAACTCACATTCTGGCATTTAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121031993 519 - 195804263 CTAGACACATTCTTGCCATGC-AAAGGAATAATTCAGACATTTAAATCCTGAGACTCTTGCCCTCAGTACTAAAGTATAAATAAAGAGAACTTCTCTGCTCTGCTCTCCCCACCTACCTCTGCTAGTCAGA-TTCTTCCAGCACCCCATCCTCTCTTCAGAAATACGTATGAGTGCACACAGAGCAGAGACCAGATTTATGACTATAAATGGAATTTGCTGACCTGGATTTGGGTTTTGTGAGGATAAAAGAGAGAGATTACATTAGGCAC--------------AAGGAAGAGAAGGCAGTGAAAAAGGGAGAGAGAAGCGAAGAGCTTTCATATATTAAAAAGGAGCAGAAGAGAGTGATGGAAACTGGACCAATGGGAGGGA------GAGAAGAAACTAACACTGAAAGGAAATATTATTGAGGAAACTGTGACCAGAAAATTGTTATGGATTATTGTCAACCTTCCTTTTTTCCCAAAGCATTTGGTGTTACTTCCTTATACAAGTAGTCCAAGAACTCACATTCTGGCATTTAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4463265 519 - 17550833 CTAGACACATTCTTGCCATGC-AAAGGAATAATTCAGACATTTAAATGCTGAGACTCTTGCCCTCAGTACTAACGTATAAATAAAGAGAACTTCTCTGCTCTGCTCTCCCCACCTACTTCTGCTAGTCAGA-TTCTTCCAACACCCCATCCTCTCTTCAGAAATACGTATGAGTGCACACAGAGCAGAGACCAGATTTATGACCATAAATGGAAGTTGCTGACCTGGATTTGGGTTTTGTGAGGATAAAAGAGAGAGATTACATTAGGCAC--------------AAGGAAGAGAAGGCAGTGAAAAAGGGAGAGAGAAGTGAAGAGCTTTCATATATTAAAAAGGAGCAGAAGAGAGTGATGGAAACTGGACCAATGGGAGGGA------GAGAGGAAACTAACACTGAAAGGAAATATTATTGAGGAAACTGTGACCAGAAAGTTGTTACGGATTATTGTCAACCTTCCTTTTTTCCCAAAGCATTTGGTGTTACTTCCTTATACAAGTAGTCCAAGAACTCACATTCTGGCATTTAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69336164 519 - 118206036 CTAGACACATTCTTGCCATGC-AAAGGAATAATTCAGACATTTAAATGCTGAGACTCTTGCCCTCAGTACTAAAGTATAAATAAAGAGAACTTCTCTGCTCTGCTCTCCCCACCTACCTCTGCTAGTCAGA-TTCTTCCAACACCCCATCCTCTCTTCAGAAATACATATGAGCACACACAGAGCAGAGACCAGATTTATGACTATAAATGGAAGTTGCTGACCTGGATTTGGGTTTTGTGAGGATAAAAGAGAGAGATTACATTAGGCAC--------------AAGGAATAGAAGGCAGTGAAAAAGGGAGAGAGAAGCGAAGAGCTTTCATATATTAAAAAGGAGCAGAAGAGAGTGATGGAAACTGGACCAATAGGAGGGA------AAGAAGAAACTAACACTGAAAGGAAATATTATTGAGGTAACTATGACCAGAAAATTGTTATCGATTATTGTCAACCTTCCTTTTTTCCCAAAGCATTTGGTGTTACTTCCTTATACGAGTACTCCACGAACTTACATTCTGGCATTTAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111539971 519 - 190429646 CTAGACACATTCTTGCCATGC-AAAGGAATAATTCAGACATTTAAATGCTGAGACTCTTGCCCTCAGTTCTAAAGTATAAATAAAGAGAACTTCTCTGCTCTGCTCTCCCCACCTACCTCTGCCAGTCAGA-TTCTTCCAACACCCCATCCTCTCTTCAGAAATACATATGAGTGCACACAGAGCAGAGACCAGATTTATGACTATAAATGGAAGTTGCTGACCTGGATTTGGGTTTTGTGAGGATAAAAGAGAGAGATTACATTAGGCAC--------------AAGGAATAGAAGGCAGTGAAAAAGGGAGAGAGAAGCGGAGAGCTTTCATATATTAAAAAGGAGCAGAAGAGAATGATGGAAACTGGATCAACAGGAAGGA------GAGAAGAAGCTAACACTGAAAGGGAATATTACTGAGGAAATTGTGACCAGAAAATTGTTATGGATTATTGTCAACCTTCCTTTTTTCCCAAAGCATTTGGCGTTACTGCCTTATACACGTACTCCAAGAACTCACATTCTGGCATTTAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110708110 519 - 189454096 CTAGACACATTCTTGCCATGC-AAAGGAATAATTCAGACATTTAAATGCTGAGACTCTTGCCCTCAGTTCTAAAGTATAAATAAAGAGAACTTCTCTGCTCTGCTCTCCCCACCTACCTCTGCCAGTCAGA-TTCTTCCAACACCCCATCCTCTCTTCAGAAATACATATGAGTGCACACAGAGCAGAGACCAGATTTATGACTATAAATGGAAGTTGCTGACCTGGATTTGGGTTTTGTGAGGATAAAAGAGAGAGATTACATTAGGCCC--------------AAGGAATAGAAGGCAGTGAAAAAGGGAGAGAGAAGCGGAGAGCTTTCATATATTAAAAAGGAGCAGAAGAGAATGATGGAAACTGGATCAACAGGAAGGA------GAGAAGAAGCTAACACTGAAAGGGAATATTACTGAGGAAATTGTGACCAGAAAATTGTTATGGATTATTGTCAACCTTCCTTTTTTCCCAAAGCATTTGGCGTTACTGCCTTATACACGTACTCCAAGAACTCACATTCTGGCATTTAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13276150 519 + 26754465 CTAGACACATTCTTGCCATGC-AAAGGAATAATTCAGACATTTAAATGCTGAGACTCTTGCCCTCAGTTCTAAAGTATAAATAAAGAGAACTTCTCTGCTCTGCTCTCCCCACCTACCTCTGCCAGTCAGA-TTCTTCCAACACCCCATCCTCTCTTCAGAAATACATATGAGTGCACACAGAGCAGAGACCAGATTTATGACTATAAATGGAAGTTGCTGACCTGGATTTGGGTTTTGTGAGGATAAAAGAGAGAGATTACATTAGGCAC--------------AAGGAATAGAAGGCAGTGAAAAAGGGAGAGAGAAGCGGAGAGCTTTCATATATTAAAAAGGAGCAGAAGAGAATGATGGAAACTGGATCAACAGGAAGGA------GAGAAGAAGCTAACACTGAAAGGGAATATTACTGAGGAAATTGTGACCAGAAAATTGTTATAGATTATTGTCAACCTTCCTTTTTTCCCAAAGCATTTGGCGTTACTGCCTTATACACGTACTCCAAGAACTCACATTCTGGCATTTAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4177424 519 - 5137665 CTAGACACATTCTTGCCATGC-AAAGGAATAATTCAGACATTTAAATGCTGAGACTCTTGCCCTCAGTTCTAAAGTATAAATAAAGAGAACTTCTCTGCTCTGCTCTCCCCACCTACCTCTGCCAGTCAGA-TTCTTCCAACACCCCATCCTCTCTTCAGAAATACATATGAGTGCACACAGAGCAGAGACCAGATTTATGACTATAAATGGAAGTTGCTGACCTGGATTTGGGTTTTGTGAGGATAAAAGAGAGAGATTACATTAGGCAC--------------AAGGAATAGAAGGCAGTGAAAAAGGGAGAGAGAAGCAGAGAGCTTTCATATATTAAAAAGGAGCAGAAGAGAATGATGGAAACTGAATCAACAGGAGGGA------GAGAAGAAGCTAACACTGAAAGGGAATATTACTGAGGAAACTGTGACCAGAAAATTGTTATGGATTATTGTCAACCTTCCTTTTTTCCCAAAGCATTTGGTGTTACTGCCTTATACACGTACTCCAAGAACTCACATTCTGGCATTTAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122892262 519 - 135778131 CTAGACACATTCTTGCCATGC-AAAGGAATAATTCAGACATTTAAATGCTGAGACTCTTGCCCTCAGTACTAAAGTATAAATAAAGAGAACTTCTCTGCTCTGCTCTCCCCACCTAGCTCTGCCAGTCAGA-TTCTTCCAACACCCCATCCTCTCTTCAGAAATACATATGAGTGCACACAGAGCAGAGACCAGATTTATGACTATAAATGGAAGTTGCTGACCTGGATTTGGGTTTTGTGAGGATAAAAGAGAGAGATTACATTAGGCAT--------------GAGGAATAGAAGGCAGGGAAAAAGGGAGAGAGAAGCAGAGAGCTTTCATATATTAAAAAGGAGCAGAAGAGAATGATGGAAACTGGATCAACAGGAGGGA------GAGAAGAAGCTAACACTGAAAGGGAATATTACTGAGGAAACTGTGACCAGAAAATTGTTATGGATTATTGTCAACTTTCCTTTTTTCCCAAAGCATTTGGCATTACTGCCTTATACACGTACTCCAAGAACTCACATTCTGGCATTTAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1994098 519 + 2427316 CTAGACACATTCTTGCCATGC-AAAGGAATAATTCAGACATTTAAATGCTGAGACTCTTGCCCTCAGTTCTAAAGTATAAATAAAGAGAACTTCCCTGCTCTGCTCTCCCCACCTACCTCTGCCAGTCAGA-TTCTTCCAACACCCCATCCTCTCTTCAGAAATACATATGAGTGCACACAGAGCAGAGACCAGATTTATGACTATAAATGGAAGTTGCTGACCTGGATTTGGGTTTTGTGAGGATAAAAGAGAGAGATTACATTAGGCAC--------------AAGGAATAGAAGGCAGTGAAAAAGGGAGAGAGAAGCGGAGAGCTTTCATATATTAAAAAGGAGCAGAAGAGAATGATGGAAACTGAATCAACAGGAGGGA------GAGAAGAAGCTAACACTGAAAGGGAATATTACTGAGGAAACTGTGACCAGAAAATTGTTATGGATTATTGTCAACCTTCCTTTTTTCCCAAAGCATTTGGTGTTACTGCCTTATACACCTACTCCAAGAACTCACATTCTGGCATTTAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1287676 510 + 1448899 CTAGACACATTCTTGCCATGC-AAAGGAATAATTCAGACATTTAAATGCTGAGACTCTTGCCCTCAGTACTAAAGTATATTTA-----TACTTCTCTGCTCTGCTCTCCCCACCTACCTCTGCCAGTCAGA-TTCTTCCAACACCCCATCCTCTCTTCAGAAATACATACGAGCACACACAGAGCAGAGACCAGATTTATGACTATAAATGGAAGTTGCTGACCTGGATTTGGGTTTTGTGAGGATAAA----AGAGATTACATTAGGCAC--------------AAGGAAGAGAAGGCAGTGAAAAAGAGAGAGAGAAGCGGAGAGCTTTCGTATATTAAAAAGGAGCAGAAGAGAATGATGGAACCTGGATCAACAGGAGGGA------GAGAAGTAACTAACACTGAAAAGAAATATTACTGAGGAAACTGTGACCAGAAAATTGTTATGGATTATTGTCAACCTTCCTTTTTTCCCAAAGCATTTGGTGTTACTGCCTTATATACGTACTCCAAGAACTCATATTCTGGCATTTAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53013162 517 - 190850796 CTAGACACATGCTTGCCATGC-AAAGAAATAATTCAGACATTTAAATGCTGAGACTCTTGCCTTCAGTACTAAAGTATAAATAAAGAGAACTTCTCTGCTCTGCTCTCCCCACCTACCTCTGCAAGGCAGA-TTCATCCAACACCCCATCCTCTCTTCAGAAATATGTATGAGTGCACACAGAGCAGAGACCAGATTTATGACTATAAATGGAAGTTGCTGACCTGGTTTTGGGTTTTGTGAGGATAAAAGAGAGAGATTATATTAGGCAC--------------AAGGAATAGAAGACAGTGAAAAA--GAGAGAGAACCAGAGAGCTTTCATATATTAAAAAGGATCAGAGGAGAGTGATAGAAACTGGACCTATAGGAGGGA------GACAGGAAACTAACACTAAAAGGAAATAATATTGAGGAAACTGTTACCAGAAAATTGCTATAGATTACTGTCAATCTTCCTTTTTTCCCAAAGCATTTGGTGTTACTGCCTTATACAAATTCTCTAAGAATTCACATTCTGGCATTTACA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8173652 517 - 15139346 CTAGACACATTCTTGCCATGC-AAAAGAATAATTCAGACATTTAAATGCTGAGACTCTTGCCTTCAGTACTAAAGTATAAATAAAGAGAACTTCTCTGCTCTGCTCTCCCCACCTACCTCTGCCAGGCAGA-TTCGTCCAACACCCTAGCCTCTCTTCAGAAATATGTATGAGTGTTCACAGAGCAGAGACCAGATTTATGACTATAAATGGAAGTTGCTGACCTGGTTTTGGGTTTTGTGAGGATAAAAGAGAGAGATTATATTAGGCAC--------------AAGGAATGGAAGACAGTGAAAAA--GAGAGAGAACCAGAGAGGTTTTATATATTAAAAAGGAGCAGAGGAGAGTGATCAAAACTGGACCAATAGAAGGGA------GACAGGTAACTAACACTAAAAGGAAATATTATTGAGGAAACTGTGACTAGAAAATTGCTATAGATTATTGTCAACTTTCCTTTTTTCCCAAAGCATTTGGTGTTACTGCCTTATACAAATTCTCCAATAATTCACATTCTGGCatttaaa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6957322 523 - 7304997 CTAGACACATTCTTGCCATGC-AAAGGAATAATTCAGACATTTAAATGCTGAGACTCTTGCCTTCAGTGCTAAAGTATAAATAAAGAGAACTTCTCTGCTCTGCTCTCCCCACCTACCTCTGCAAGGCAGA-TTCGTCCAACGCCCTATCCTCTCTTCAGAAATATGTATGAGTGCTCACAGAGCAGAGACCAGATTTATGACTATAAATGGAAGTTGTTGACCTGGTTTTGGGTTTTGTGAGGATAAAAGAGAGAGATTATATTAGGCAC--------------AAAGAATAGAAGACAGTGAAAAA--GAGAGAGAACCAGAGAGCTTTTATATATTAAAAAGGAGCAGAGGAGAGTGATGGAAACTGGACCAATAGGAGGGAGACAGGGACAGGAAACTGACACTAAAAGGAAATATTATTGAGGAAACTGTGACCAGAAAATTGCTATAGATTATTGTCAACCTTCCTTTTTTCCCAAAGCATTTGGTGTTACTGCCTTATATAAATTCTCCAATAATTCACATTCTGGCATTTAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9375371 529 - 11631747 CTAGACACATTCTTGCCATGC-AAAGGAACAATTCGGACATTTGAATGCTGAGACTCTTGCCTTCAGTACTAAAGTATAAATAAAGAGAACTTCTCTGCTCTGCTCTCCCCACCTACCTCTGCAAGGCAGA-TTCGTCCAACACCCCATCCTCTCTTCAGAAATATGTATGAGTGCACACAGAGCAGAGACCAGATTTAAGACTATAAATGGAAGTTGCTGACCTGGTTTTGGGTTTTGTGAGGATAAAAGCGAGAGATTATATTAGGAATAGAAGACAGTGAAAAAGGAATAGAAGACAGTGAAAAA--GAGAGAGAACCAGAGAGCTTTTATATATTAAAAAGAGGCAGAGGAGAGTGATGGAAACTGGACCAATAGGAGGGA------GACAGGAAACTAACACTAAAAGGAAATATTATTGAGGAAACTG--ACCAGAAAATTGCTATAGATTATTGTCAACCTTCCTTTTTTCCCAAAGCATTTGGTGTTACTGCCTTATACAAATTCTCCAATAATTCACATTCTGGCATTTAAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1780020 513 + 3286835 CTAGACACATTCTTGCCATGC-AAAGGAATGATTCAGACATTTAGATGTTGAGGCTCCTGCCCTTAGTATTAAAGTATAAATAAAAAGCACTTCTCTGCTCTGTTCTCCTCATCTACCTCTATTAGTTAGAGTTCCCCCAGCACCCCACCCTCTCTTCAGAAATACACATGAGCACACAT-GAGTGGAGACCAGATTTATAACTATAAATGGAAGTTACTGACCTGGATTTGGGTTTTATGGGGATAAAAA--GGAGATTGCATTCTGCAC--------------AAGGAATAGAAGACAGTGGGAAAGAAAGAGAGAGGCAGGGAGCTTTCACATATCAGGAAGGAGCACAGGAGAGTCACAGAAACTGGACCAACAGGAGGGA---------AAGAAACTAACACTGAAAGGAAACATTATAGAGGAAACTGTTATCAGAAAATTCCTATGGATTATTGTAAATCTT-TTTTTTCCCCAAAGCATTTAGCATCACTGTCTTAAACAAGTACTCAAAGAAATCACATTCTGGCATTTAAA i micMur3.chrUn_NW_017968520v1 I 19 C 0 s proCoq1.NW_012140747v1 1868386 514 + 4188776 CTAGACACATTCTTGCCATGC-AAAGGAATAATTCAGACATTTAAATGCTGAGACTCTTGCCCTTAGTATTAAAGTATAAATAAAAAGCACTTCTCTGCTCTCTTCTCCTCATCTACCTCTGTTCGTCAGAGTTCCCCCAACACCCCATCCTCTATTCAGAAATACAAATGAGCACACAT-GAGTGGAGACCAGATTTATAACTATAAATGGAAGTTACTGACCTGGATTTGGGTTTTATGGGGATAAAAA--GGAGATTGCATTCTGCAC--------------AAGGAATAGAAGACAGTGAGAAAGAAAGAGAGAGGCAGGGAGCTTTCACATATCAGGAAGGAGCACAGGAGAGTCACAGAAATTGGACCAACAGGAGGGA---------AAGAAACTAACACTGAAAGGAAACGTTAGTGAGGAAACTGGTATCAGAAAATTGCTATGGATTATTGTAAATCTTCTTTTTTTCCCAAAGCATTTAGTGTCACTGCCTTATACAAGTACTCAAAGAACTCACATTCTGGCATTTAAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8606750 443 + 8790067 CT--ATACATTCCTGCCATGT-AAAGGAATAA----------TAAAT--------------------------------AATAAGGAGGACTTCTTTGCTCAAATC------TCTGCTTCTCTGTGTCAGGATTCCCCCAACACCCCATCCTCTCTTCACAAACACGCATGAGCCCACACGGAGCAGAGACCAGATTTATAACTATAAATGGAAGTTACTGACCTGGATTTGGGTTTTATGGGGATAAAAG--GGAGATTACATTCTGCAC--------------AAGGAACAGAAGACAGTGGGAAAGAC--AGAGAAGCAGAGAGAGTTCCCATATCAGGAAGGAGCGCAGGAGAATAACAGAAACTGGATCAAGGGGAGGGA---------GAGAAACTAACACTAGAAGGGAACAATACTGAGGAAGCTGTTCTCAGGAAATTATCATGGATTGCTTTAAATCTTCCTTTTTCCCCACAGCATTTAGCA--------------------TCAAAGAACTCACATGAAGGTGTTTAAA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 47996050 499 + 63241923 CTAGACACATTCTTGCCATGCAAAAAAAACAATTCAGAGGTTTGAATGCTGAGACTCTTACCCTTAG---TAAAGTTTAAATAAGGAGACATTCTCTTCTCTA----CCTCA-CTATCCTAGCTAGTCAAGGTTCTTCCAACACCCTATCCTCTCTCCAGAAATACAAAGAAGTACACATAGACTAGGGACTAAATTTATAACAAT-GATGGAAGTTATTGACCTGGATTTTGGCTTTGT-AGGGTAA-----TGAGATGACATTTTGCAC--------------AAGAAATAGAAGATAGTGGGA----GAGAAGGAAGC--ACAGTTTTCATGTGTTACAAAGGAGCATAGGAGATTTTTAAAAATTGGACAAACAGGAGGGG------GAGAAGAAACTACCACTAAAAGGAAATACTATTTAGGAAATTATTATTGGGAAATTGCTATGAATTATTACAAACCTTCCTTTTTCCCTAAAGCATTTAACGTCTCTACTTTATAC-TTTATTCCAAGAACCTAGATGCTGTCATTTaaa i canFam3.chr13 C 0 I 226 e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I a score=13923.000000 s hg38.chr4_KI270787v1_alt 54409 1 + 111943 A s panTro5.chr4 119619104 1 - 194502333 A i panTro5.chr4 C 0 C 0 s panPan2.chr4 121032512 1 - 195804263 A i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4463784 1 - 17550833 A i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69336683 1 - 118206036 A i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111540490 1 - 190429646 A i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110708629 1 - 189454096 A i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13276669 1 + 26754465 A i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4177943 1 - 5137665 A i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122892781 1 - 135778131 A i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1994617 1 + 2427316 A i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1288186 1 + 1448899 A i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53013679 1 - 190850796 A i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8174169 1 - 15139346 a i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6957845 1 - 7304997 A i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9375900 1 - 11631747 A i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1780533 1 + 3286835 A i micMur3.chrUn_NW_017968520v1 C 0 I 664 s proCoq1.NW_012140747v1 1868900 1 + 4188776 A i proCoq1.NW_012140747v1 C 0 I 660 e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e otoGar3.GL873602 8607193 0 + 8790067 C e canFam3.chr13 47996549 226 + 63241923 I a score=286542.000000 s hg38.chr4_KI270787v1_alt 54410 38 + 111943 TTTTCTTT---------------------------AAAAAAAAAAA--TTCATATACCTAATTACTT s panTro5.chr4 119619105 37 - 194502333 TCTTCTTT---------------------------AAAAAAAAAA---TTCATATACCTAATTACTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121032513 37 - 195804263 TCTTCTTT---------------------------AAAAAAAAAA---TTCATATACCTAATTACTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4463785 37 - 17550833 TTTTCTTT---------------------------AAAAAAAAAA---TTCATATACCTAATTACTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69336684 36 - 118206036 TTTTCTTT---------------------------AAAAAAAAA----TTCATATACCTAATTACTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111540491 40 - 190429646 TTTTCTTT---------------------------AAAACAAAACCCTTTCATATACCTAATTACTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110708630 40 - 189454096 TTTTCTTT---------------------------AAAACAAAACCCTTTCATATACCTAATTACTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13276670 40 + 26754465 TTTTCTTT---------------------------AAAACAAAACCCTTTCATATACCTAATTACTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4177944 41 - 5137665 TTTTCTTT--------------------------AAAAAAAAAACCCTTTCATATACCTAATTACTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122892782 40 - 135778131 TTTTCTTT---------------------------AAAACAAAACCCTTTCATAGACCTAATTACTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1994618 40 + 2427316 TTTTCTTT---------------------------AAAAAAAAACCCTTTCATATACCTAATTACTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1288187 41 + 1448899 TTTTCTTA--------------------------AAAAAAAAAACCCTTTCATATACCTAATTACTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53013680 41 - 190850796 TTTTCTT--------------------------TAAAAAAGAAAACATTTCATATACTTAATTACTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8174170 43 - 15139346 ttttctta------------------------aaaaaaaaaaaaaCCTTTCACATACCTAATTACTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6957846 67 - 7304997 GTTTCTTAAAGCaaacaaacaaacaaataaacaaacaaaaaaaaaaCCTTCACATACCTAATTACTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9375901 52 - 11631747 TTTTCTTaaaaaacaaa---------------aaaacaaaaaaaaCCTTTCACATACCTAATTACTT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8607193 30 + 8790067 -------------------------------------AAAAGAAACCCTTGTTATGCCTAATTActt i otoGar3.GL873602 C 0 I 254 e proCoq1.NW_012140747v1 1868901 660 + 4188776 I e micMur3.chrUn_NW_017968520v1 1780534 664 + 3286835 I e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e canFam3.chr13 47996549 226 + 63241923 I a score=179217.000000 s hg38.chr4_KI270787v1_alt 54448 18 + 111943 CTTTCCATTCATTTGTTA s panTro5.chr4 119619142 18 - 194502333 CTTTCCATTGAtttgtta i panTro5.chr4 C 0 C 0 s panPan2.chr4 121032550 18 - 195804263 CTTTCCATTGAtttgtta i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4463822 18 - 17550833 CTTTCCATTGAtttgtta i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69336720 18 - 118206036 CTTTCCATTGAGTTGTTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111540531 18 - 190429646 CTTTCCACTGAtttgtta i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110708670 18 - 189454096 CTTTCCACTGAtttgtta i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13276710 18 + 26754465 CTTTCCACTGAtttgtta i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4177985 18 - 5137665 CTTTCCACTGAtttgtta i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122892822 18 - 135778131 CTTTCCACTGAtttgtta i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1994658 18 + 2427316 CTTTCCACTGAtttgtta i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1288228 18 + 1448899 CTTTCCACTGAtttgtta i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53013721 18 - 190850796 CCTTTCATTGAtttgtta i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8174213 18 - 15139346 CTTTTCATTGATTTGTTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6957913 18 - 7304997 CTTTTCATTGAtttgtta i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9375953 18 - 11631747 CTTTCCATTGATTTGTCA i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1868901 660 + 4188776 I e micMur3.chrUn_NW_017968520v1 1780534 664 + 3286835 I e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e otoGar3.GL873602 8607223 254 + 8790067 I e canFam3.chr13 47996549 226 + 63241923 I a score=2360594.000000 s hg38.chr4_KI270787v1_alt 54466 260 + 111943 -----------------AAATAATAAACATAaaatt------------------------------------------------------gatctttatgtttgaaatagttt----ctcacaagaaattggaaaaatagtacagagaattatcatgtacccttca-----cttcccc---cagtattattacatatcccca------gagcacattgtcaaaaccaggaaattgatgttgttcattattattacctcagatacagtccttattcatattcca---gtgttacttaca------------------ctttttcttcttttttttttttcttggtctatagttttctgaagttttatcaca s panTro5.chr4 119619160 247 - 194502333 -----------------aaat-------------tt------------------------------------------------------gatctttatgtttgaaatagttt----ctcacaagaaattggaaaaatagtacagagaattatcatgtacccttca-----cttcccc---cagtattattacatatcccca------gagcacattgtgaaaaccaggaaattgatgttgttcagtattattacctcagatacagtccttattcatattcca---gtgttacttaca------------------ctttttcttcttttttttttttcttggtctatagttttctgaagttttatcaca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121032568 252 - 195804263 -----------------aaat-------------tt------------------------------------------------------gatctttatgtttgaaatagttt----ctcacaagaaattggaaaaatagtacagagaattatcatgtacccttca-----cttcccc---cagtattattacatatccccacattgtgagcacattgtgaaaaccaggaaattgatgttgttcagtattattacctcagatacagtccttattcatattcca---gtgttacttaca------------------ctttttcttc-tttttttttttcttggtctatagttttctgaagttttatcaca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4463840 245 - 17550833 -----------------aaat-------------tt------------------------------------------------------gatctttatgtttgaaatagttt----ctcacaagaaattggaaaaatagtacagagaattatcatgtacccttca-----cttcccc---cagtattattacatatcccca------gagcacattgtcaaaaccaggaaattgatgttgttcagtattattacctcagatacagtccttattcatattcca---gtgttacttaca------------------ctttttcttc--ttttttttttcttggtctatagttttctgaagttttatcaca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69336738 246 - 118206036 -----------------AAAT-------------TT------------------------------------------------------GATCtttatgtttgaaatagttt----ctcacaagaaattggaaacatagtacagagaattaccatgtacccttca-----cttcccccaacagtattattacatatcccca------gagcacattgtcaaaaccaggaaattga---tgttcagtattattacctcagatacagtccttattcatattcca---gtgttacttaca------------------ctttttcttc-tttttttttttcttgatctatagttttctgaagttttatcaca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111540549 246 - 190429646 -----------------aaat-------------tt------------------------------------------------------gatctttttgtttgaaatagttt----ctcacaagaacttggaaaaatagcacagagaattaccatgtacccttca-----cttcccctaacagtattattacatatcccca------gagcacattgtcaaaaccaggaaattgatgttgttcagtattattacctcagatacagaccttactcatattcca---gtgttacttaca------------------ctttttcttc----tttcttttcttggtctatagttttatgaagttttatcaca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110708688 246 - 189454096 -----------------aaat-------------tt------------------------------------------------------gatctttttgtttgaaatagtgt----ctcacaagaacttggaaaaatagcacagagaattaccatgtacccttca-----cttcccctaacagtattattacatatcccca------gagcacattgtcaaaaccaggaaattgatgttgttcagtattattacctcagatacagaccttattcatattcca---gtgttacttaca------------------ctttttcttc----tttcttttcttggtctatagttttatgaagttttatcaca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13276728 246 + 26754465 -----------------aaat-------------tt------------------------------------------------------gatctttttgtttgaaatagttt----ctcacaagaacttggaaaaatagcacagagaattaccatgtacccttca-----cttcccctaacagtattattacatatcccca------gagcacattgtcaaaaccaggtaattgatgttgttcagtattattacctcagatacagaccttattcatattcca---gtgttacttaca------------------ctttttcttc----tttcttttcttggtctatagttttatgaagttttatcaca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4178003 246 - 5137665 -----------------aaat-------------tt------------------------------------------------------gatctttttgtttgaaatagttt----ctcacaagaacttggaaaaatagcacagagaattaccatgtacccttca-----cttcccccaacagtattattacatatcccca------gagcacattgtcaaaaccaggaaattgatgttgttgagtattattacctcagatacagaccttattcatatccca---gtgttacttaca------------------ctttttcttc----tttcttttcttggtctatagttttatgaagttttatcaca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122892840 246 - 135778131 -----------------aaat-------------tt------------------------------------------------------gatctttttgtttgaaatagttt----ctcacaagaacttggaaaaatagcacagagaattaccatgtacccttca-----cttcccctaacagtattattacatatcccca------gagcacattgtcaaaaccaggaaattgatgttgttcagtattattacctcagatacagaccttattcatattcca---gtgttacttaca------------------ctttttcctc----tttcttttcttggtctatagttttatgaagttttatcaca i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1994676 246 + 2427316 -----------------aaat-------------tt------------------------------------------------------gatctttttgtttgaaatagttt----ctcacaagaacttggaaaaatagcacagagaattaccatgtacccttca-----cttcccccaacagtattattacatatcccca------gagcacattgtcaaaaccaggaaattgatgttgttgagtattattacctcagatatagaccttattcatatccca---gtgttacttaca------------------ctttttcttc----tttcttttcttggtctatagttttatgaagttttatcaca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1288246 246 + 1448899 -----------------aaat-------------tt------------------------------------------------------gatctttttgtttgaaatagttt----ctcacaagaacttggaaaaatagcacagagaattaccatgtacccttca-----cttcccccaacagtattattacatatcccca------gagcacattgtcaaaaccaggaaattgatgttgttcagtattattacctcagatacagaccttattcatattcca---gtgttacttaca------------------ctttttcttc----tttcttttcttggtctatagttttatgaagttttatcaca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53013739 227 - 190850796 -----------------aaat-------------tt------------------------------------------------------gatctttatatttgaaataattt----ctcacaagaaattggaaaaatagtatggagaat-----ggtactcttca-----cttcccccaacagaattattacatatcccca------gaggacattgtcaaaaccaggaaattga---tgttcagtattgttaactgaa----------TAATATTATATGA---ATAAGGTCTATA-------------------TCTGAGGTT----TTTTTTTTTTTGGTCTATAGTTTTATGAAGTTTTATCACA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8174231 259 - 15139346 -----------------AAAT-------------TT------------------------------------------------------GATCtttatgtttgaaataattt----ctcacaagaaattggaaaaatagtacagagaat-----ggtacccttca-----cttcccccaacggtactattacatatcccca------gaggacattgtcaaaaccaggaaactgatgttgttcagtattattacctcagatacagaccttattcatattcca---gtgttgcttatactttttcttctTCtttcttttttttttt----tttttttttttGGTCTATAGTTTTATGAAGTTTTATCACA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6957931 238 - 7304997 -----------------aaat-------------tt------------------------------------------------------gatctttatgtttgaaataattt----ctcacaggaaactggaaaaatagtacggagaat-----ggtacccttcg-----cttcccccaacagtattattacatatcccca------gaggacattgtcaaaaccaggaaactgatgttgttcagtactattatctcagatacagaccttattcatattcca---gtgttacttata---------------------ctttttc----ttcttttttttggtctatagttttatgaagttttatcaca i cebCap1.NW_016107439v1 C 0 I 50 s aotNan1.NW_018493494v1 9375971 239 - 11631747 -----------------AAAT-------------TT------------------------------------------------------GATCtttatatttgaaataattt----ctcacaagaaattggaaaaatagtacggagaat-----ggtacccttca-----cttctcccaacagtattattacatatcccca------gaggacattgtcaaaaccaggaaactgatgttattcagtattattacctcagatacagaccttattcatattcca---gtgttacttata--------------------ctttttat----tctttttatttggtccatagttttatgaagttttgtcaca i aotNan1.NW_018493494v1 C 0 I 50 s canFam3.chr13 47996775 315 + 63241923 aaaaaataaatgaaaaaaaaT-------------TTAAAAAGAAATAAAGAAACCCTTCACCTAATTACTTTCTACTGAtttaaaaaaaaaaactttatctttg-aatagtttaaggtttataagaaactgaaaaagtagt----agagctaccatgtaccctccacccagcttcccccaataatgtt-----atatgccct------tagctcattgtcaaaaacaggacactaatattgttcaattttattaactcaggtgtagactttattcagatttcacagattttataaaca------------------cttttttttccctttcctcttttctagtcta--------tgaagttttattgta i canFam3.chr13 I 226 C 0 e proCoq1.NW_012140747v1 1868901 660 + 4188776 I e micMur3.chrUn_NW_017968520v1 1780534 664 + 3286835 I e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e otoGar3.GL873602 8607223 254 + 8790067 I a score=5757.000000 s hg38.chr4_KI270787v1_alt 54726 1 + 111943 c s panTro5.chr4 119619407 1 - 194502333 c i panTro5.chr4 C 0 C 0 s panPan2.chr4 121032820 1 - 195804263 c i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4464085 1 - 17550833 c i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69336984 1 - 118206036 c i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111540795 1 - 190429646 c i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110708934 1 - 189454096 c i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13276974 1 + 26754465 c i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4178249 1 - 5137665 c i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122893086 1 - 135778131 c i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1994922 1 + 2427316 c i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1288492 1 + 1448899 c i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53013966 1 - 190850796 T i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8174490 1 - 15139346 T i saiBol1.JH378162 C 0 C 0 s canFam3.chr13 47997090 1 + 63241923 t i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1868901 660 + 4188776 I e micMur3.chrUn_NW_017968520v1 1780534 664 + 3286835 I e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e otoGar3.GL873602 8607223 254 + 8790067 I a score=1220736.000000 s hg38.chr4_KI270787v1_alt 54727 205 + 111943 atgcagattcgaataaccaacaccacagtcagggtacagaactcttctgacactacaaagaaac-ccccagtattcttccttgagaatcacaccgt-tctcccagtgctggtcccaggcaacctctgatctgtt--ttccatactattattttgtcacttgg-----------ggttagttatataatcaatcatgtggtat-----acaaccctttgagaccgg s panTro5.chr4 119619408 205 - 194502333 atgcagattcgaataaccaacaccacactcagggtacagaactcttctgacactacaaagaaac-ccccagtattcttccttgagaatcacaccct-tctcccagtgctagtcccaggcaacctctgatctgtt--ttccatactattattttgtcacttgg-----------ggttagttatataatcaatcatgtggtat-----acaaccctttgagactgg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121032821 205 - 195804263 atgcagattcgaataaccaacaccacactcagggtacagaactcttctgacactacaaagaaac-ccccagtattcttccttgagaatcacaccct-tctcccagtgctagtcccaggcaacctctgatctgtt--ttccatactattattttgtcacttgg-----------ggttagttatataatcaatcatgtggtat-----acaaccctttgagactgg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4464086 205 - 17550833 atgcagattcgaataaccaacaccacagtcagggtacagaactgttctgacactacgaagaaac-ccccagtattcttccttgagaatcacaccct-tctcccagtgctagtcccaggcaacctctgatctgtt--ttccttactattattttgtcacttgg-----------ggatagttatataatcaatcatgtggtat-----acaaccctttgagactgg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69336985 203 - 118206036 atacggattcaaataaccaacaccacagtcagggtacagaactgttctgacactacaaaaaaa--ccccagttttcttccttgagaatcacacccg-tctcccagtgctagtcctaggcaacctctgatctgtt--ttccatgctatta-tttgtcacttgg-----------ggatagttatataatcaatcatgtggtat-----acaaccctttgagaatgg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111540796 221 - 190429646 atacagattcgaacaaccaacaccacagtcaggacacagaactgttccaacactacaaagaaac-ccccagtattcttccttgagagtcacactct-tctcccagtgctagccccaggcaacctctgatctgtt--ttccatattataattttgtcacttggggattgttataggattgttatataatcaatcatgtggtatagtacacaaccctttgagactgg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110708935 221 - 189454096 atacagattcgaacaaccaacaccacagtcaggacacagaactgttccaacactacaaagaaac-ccccagtattcttccttgagagtcacactct-tctcccagtgctagccccaggcaacctctgatctgtt--ttccatattataattttgtcacttggggattgttataggattgttatataatcaatcatgtggtatagtacacaaccctttgagactgg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13276975 221 + 26754465 atacagattcgaacaaccaacaccacagtcaggacacagaactgttccaacactacaaagaaac-ccccagtattcttccttgagagtcacactct-tctcccagtgctagccccaggcaacctctgatctgtt--ttccatattataattttgtcacttggggattgttataggattgttatataatcaatcatgtggtatagtacacaaccctttgagactgg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4178250 221 - 5137665 atacagatttgaataaccaacaccacactcaggacacagaactcttccaacactacaaagaaac-ccccagtattcttccttgagagtcacaccct-tctcccagtgctagccccaggcaacctctgatctgtt--ttccatattataattttgtcacttggggattgttataggattgttatataatcaatcatgtggtatagtatacaaccctttgagactgg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122893087 221 - 135778131 atacagatttgaataaccaaaaccacactcaggacacagaactgttccaacattacaaagaaac-ccccagtattcttccttcagagtcacaccct-tcccccagtgctagccccaggcaacctctgatctgtt--ttccatattataattttgtcacttggggattgttataggattgttatataatcaatcatgtggtatagtatacaaccctttgagactgg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1994923 221 + 2427316 atacagattcgaacaaccaacaccacagtcaggacacagaactgttccaacactacaaagaaac-ccccagtattcttccttgagagtcacactct-tctcccagtgctagccccaggcaacctctgatctgtt--ttccatattacaattttgtcacttggggattgttataggattgttatataatcaatcatgtggtatagtacacaaccctttgagactgg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1288493 221 + 1448899 atacagattcgaataaccaacaccacagtcaggacacagaattattccaacactacaaagaaac-ccccaggattcttccttgagagtcacaccct-tctcccagtgctagccccaggcagcctctgatctgtt--ttccatattataattctgtcacttggggattgttataggattgttatataatcagtcatgtgatatagtatacaaccctttgagaccgg i colAng1.NW_012119221v1 C 0 C 0 s canFam3.chr13 47997091 204 + 63241923 gtgtagatttgaataaccagtacttctatcaagatttagaatggttccaccactacagagaaacttcccaatgttaatccttaattgtgacaccctgggccccagcactagcccca-gcaaccactggtctgttcctccagcactataactttgtcatttgg-----------aggctattatataatcaccca----gtat-----ataaccacttgagattgg i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1868901 660 + 4188776 I e micMur3.chrUn_NW_017968520v1 1780534 664 + 3286835 I e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8607223 254 + 8790067 I a score=436383.000000 s hg38.chr4_KI270787v1_alt 54932 93 + 111943 ctGCTGCTGCttc----------------ttttttttttga--gagagagacagggtcttgctacattgccccagctggacttaaactcctgggcttaag---------caatcctcatg s panTro5.chr4 119619613 95 - 194502333 ctGCTGCTGCTTC----------------ttttttttttttttgagagagacagggtcttgctacattgccccagctggacttaaactcctgggcttaag---------caatcctcatg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121033026 93 - 195804263 ctGCTGCTGCttc----------------ttttttttttga--gagagagacagggtcttgctacattgccccagctggacttaaactcctgggcttaag---------caatcctcatg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4464291 93 - 17550833 ctGCTGCTGCttc----------------ttttttttttga--gagagagacagggtcttgctacattgccccagctggacttaaactcctgggcttaag---------caatcctcatg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69337188 90 - 118206036 ctGCTGCTGCttc----------------ttttttttcta---gagagagacagggtcttgctacattgccccagctggact--aactcctgggcttacg---------caatcctcctg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111541017 109 - 190429646 cttcttCTTCTTCTTCTTTTTTTTTtttgtttttgtttttt--aagaaagacagggtcttgctacattgtcccagctggattcaaactcctgggcttaag---------caatcctcctg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110709156 108 - 189454096 cttcttCTTCTTCTTTTTTTTT-TTtttgtttttgtttttt--aagaaagacagggtcttgctacattgtcccagctggattcaaactcctgggcttaag---------caatcctcctg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13277196 102 + 26754465 cttcttCTTCTTCTTCTTCttt-------tttttttttttt--aagaaagacagggtcttgctacattgtcccagctggattcaaactcctgggcttaag---------caatcctcctg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4178471 87 - 5137665 ctGCTGC----------------------tttttttttttt--tagaaagatagggtcttgctacattgtcccagctggattcaaactcctgggcttaag---------caatcctcctg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122893308 96 - 135778131 GCGCTGCTCCTTCTTt-------------tttttttttttt--tagaaagatagggtcttgctacattgtcccagctggattcaaactcctgggcttaag---------caatcctcctg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1995144 96 + 2427316 cttcttCTTCTTCttt-------------tttttttttttt--aagaaagacagggtcttgctacattgtcccagctggattcaaactcctgggcttaag---------caatcctcctg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1288714 110 + 1448899 cttcttCTTCTTCTTTTTTCt--------tttttctttttt--tagaaagacagggtcttgctacattgtcccagctggattcaaactcctgggcttaagcagcttaaccaatcctcctg i colAng1.NW_012119221v1 C 0 C 0 e proCoq1.NW_012140747v1 1868901 660 + 4188776 I e micMur3.chrUn_NW_017968520v1 1780534 664 + 3286835 I e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8607223 254 + 8790067 I e canFam3.chr13 47997295 0 + 63241923 C a score=215610.000000 s hg38.chr4_KI270787v1_alt 55025 32 + 111943 agtagctgggactacaggcatgtgccactgca s panTro5.chr4 119619708 32 - 194502333 agtagctgggactacaggcatgtgccactgca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121033119 32 - 195804263 agtagctgggactacaggcatgtgccactgca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4464384 32 - 17550833 agtagctgggactacaggcatgtgccactgca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69337278 32 - 118206036 agtagctgggactacaggcatgtgccactgca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111541126 32 - 190429646 agtaggtgggactacaggcatgtgccactgca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110709264 32 - 189454096 agtaggtgggactacaggcatgtgccactgca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13277298 32 + 26754465 agtaggtgggactacaggcatgtgccactgca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4178558 32 - 5137665 agtaggtgggactacaggcatgtgccactgca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122893404 32 - 135778131 agtaggtgggactacaggcatgtgccactgca i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1995240 32 + 2427316 agtaggtgggactacaggcatgtgccactgca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1288824 32 + 1448899 agttgctgggactacaggcatgtgccactgca i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1781198 32 + 3286835 agtagctgggactgcaggtgtgtgtcaccatg i micMur3.chrUn_NW_017968520v1 I 664 C 0 e proCoq1.NW_012140747v1 1868901 660 + 4188776 I e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8607223 254 + 8790067 I e canFam3.chr13 47997295 0 + 63241923 C a score=115207.000000 s hg38.chr4_KI270787v1_alt 55057 15 + 111943 cccggcTGTGACTGT s panTro5.chr4 119619740 15 - 194502333 cccggcTGTGACTGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121033151 15 - 195804263 cccggcTGTGACTGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4464416 15 - 17550833 cccggcTGTGACTGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69337310 15 - 118206036 cctggcTGTGACTGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111541158 15 - 190429646 cccagcTGTGACTGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110709296 15 - 189454096 cccagcTGTGACTGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13277330 15 + 26754465 cccagcTGTGACTGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4178590 15 - 5137665 cccagcTGTGACTGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122893436 15 - 135778131 cccagcTGTGACTGT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1995272 15 + 2427316 cccagcTGTGACTGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1288856 15 + 1448899 cccagcTGTGACTGT i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1781230 15 + 3286835 cccagcTGAGACTGC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1869561 15 + 4188776 cccagctgagactgg i proCoq1.NW_012140747v1 I 660 C 0 e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8607223 254 + 8790067 I e canFam3.chr13 47997295 0 + 63241923 C a score=703159.000000 s hg38.chr4_KI270787v1_alt 55072 81 + 111943 CTTTTTAAGC---TTGCCTTTAAGATCCAGCCTTCACATTGATTTTTAAAGTTCCAATTAAGCAAAATTTAAAATAAGACCAAC--- s panTro5.chr4 119619755 81 - 194502333 CTTTTTAAGC---TTGCCTTTAAGATCCAGCCTTCACATTGATTTTTAAAGTTCCAATTAAGCAAAATTTAAAATAAGACCAAC--- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121033166 81 - 195804263 CTTTTTAAGC---TTGCCTTTAAGATCCAGCCTTCACATTGATTTTTAAAGTTCCAATTAAGCAAAATTTAAAATAAGACCAAC--- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4464431 81 - 17550833 CTTTTTAAGC---TTGCCTTTAAGATCCAGCCTTCACATTGATTTTTAAAGTTCCAATTAAGCAAAATTTAAAATAAGACCAAC--- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69337325 81 - 118206036 CTTTTTAAGC---TTGCCTTTAAGATCCATCCTTCACATTGATTTTTAAAGTTCCAATTAAGCAAAATTTAAAATAAGACCAAC--- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111541173 81 - 190429646 CTTTTTAAGC---TTGCCTTTAAGATCCACCCTTCACATTGATTTTTAAAGTTCCAATTAAGCAAAATTTAAAATAAGACCAAC--- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110709311 81 - 189454096 CTTTTTAAGC---TTGCCTTTAAGATCCACCCTTCACATTGATTTTTAAAGTTCCAATTAAGCAAAATTTAAAATAAGACCAAC--- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13277345 81 + 26754465 CTTTTTAAGC---TTGCCTTTAAGATCCACCCTTCACATTGATTTTTAAAGTTCCAATTAAGCAAAATTTAAAATAAGACCAAC--- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4178605 81 - 5137665 CTTTTTAAGC---TTGCCTTTAAGATCCACCCCTCACATTGATTTTTAAAGTTCCAATTAAGCAAAATTTAAACTAAGACCAAC--- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122893451 81 - 135778131 CTTTTTAAGC---TTGCCTTTAAGATCCACCCTTCACATTGATTTTTAAAGTTCCAATTAAGCAAAATTTAAAATAAGACCAAC--- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1995287 81 + 2427316 CTTTTTAAGC---TTGCCTTTAAGATCCACCCTTCACATTGATTTTTAAAGTTCCAATTAAGCAAAATTTAAAATAAGACCAAC--- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1288871 81 + 1448899 CTTTTTAAGC---TTGCCTTTAAGATCCACCCTTCACATTGATTTTTAAAGTTCCAATTAAGCAAAATTTAAAATAAGACCAAC--- i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1781245 83 + 3286835 CTTTTTAAGCTTGTTGCCCTTAAGATCTACCCTTTAC-TTGATTTTTGAAGTTCCAAGTAAGTAAAATTTAAAATAAGACCAAC--- i micMur3.chrUn_NW_017968520v1 C 0 I 451 s proCoq1.NW_012140747v1 1869576 80 + 4188776 ctttttaggc---tttcccttgaaatccatccTTTAC-TTGATTTTTAAAGTTCCAATTAAGTAAAATTTAAAATAAGACCAAC--- i proCoq1.NW_012140747v1 C 0 C 0 s canFam3.chr13 47997295 83 + 63241923 ctttttgagc---ttgcccttaagatccatccTTTACATTGATTTTTAAAGATCCTGTTAAGCAAAATTTAAAGTTA-ACCAACATC i canFam3.chr13 C 0 C 0 e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8607223 254 + 8790067 I a score=435084.000000 s hg38.chr4_KI270787v1_alt 55153 85 + 111943 ACCTTATTATC-TAAACAT--------TTGTTTTCCATGTGCTCTATTC---AAGAAAATAAAGTGATCAGAA--TAG--------TTTTTTTGAAATTAAAAATAA s panTro5.chr4 119619836 85 - 194502333 ACCTTATTATC-TAAACAT--------TTGTTTTCCATGTGCTCTATTC---AAGAAAATAAAGTGATCAGAA--TAG--------TTTTTTTGAAATTAAAAATAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121033247 85 - 195804263 ACCTTATTATC-TAAACAT--------TTGTTTTCCATGTGCTCTATTC---AAGAAAATAAAGTGATCAGAA--TAG--------TTTTTTTGAAATTAAAAATAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4464512 89 - 17550833 ACCTTATTATC-TAAACATT----TAATTGTTTTCCATGTGCTCTATTC---AAGAAAATAAAATGATCAGAA--TAG--------TTTTTTTGAAATTAAAAATAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69337406 85 - 118206036 ACCTTATTATC-TAAACAT--------CTGTTTTCCATGTGCACTATTC---AAGAAAAAAAAGTGATCAGAA--TAG--------TTTTTTTGAAATTAAAAATAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111541254 86 - 190429646 ACCTTGTTATC-TAAACATT----TAATTGTTTTCCATGTGCACTATTT---AAGAAAA-AAAGTGTTCAGAA--T----------TTTTTTTGAAATTAAAAATAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110709392 86 - 189454096 ACCTTGTTATC-TAAACATT----TAATTGTTTTCCATGTGCACTATTT---AAGAAAA-AAAGTGTTCAGAA--T----------TTTTTTTGAAATTAAAAATAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13277426 84 + 26754465 ACCTTGTTATC-TAAACATT----TAATTGTTTTCCATGTGCACTATTC---AAGAAAA-AAAGTGTTCAGAA--T----------TTTTTTTGAAATTAAAAAT-- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4178686 88 - 5137665 ACCTTGTTATT-TAAACATT----TAATTGTTTTCCATGTGCACTATTC---AAGAAAA-AAAGTGTTCAGAATTT----------TTTTTTTGAAATTAAAAATAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122893532 86 - 135778131 ACCTTGTTATC-TAAACATT----TAATTGTTTTCCATGTGCACTATTC---AAGAAAA-AAAGTGTTCAGAA--T----------TTTTTTTGAAATTAAAAATAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1995368 87 + 2427316 ACCTTGTTATC-TAAACATT----TAATTGTTTTCCATGTGCACTATTT---AAGAAAA-AAAGTGTTCAGAA-TT----------TTTTTTTTTAATTAAAAATAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1288952 86 + 1448899 ACCTTGTTATC-TAAACATT----TAATTGTTTTCCATGTGCACTATTC---AAGAAAA-AAAGTGTTCAGAA--T----------TTCTTTTGAAATTAAAAATAA i colAng1.NW_012119221v1 C 0 C 0 s proCoq1.NW_012140747v1 1869656 99 + 4188776 ACCTTGATATCATCAAAATTGATCTAATTGTTTTCCATGTGCACTATTCAGGAAGAAAA-AAAGTGTTCAGAA--TAG-----CTTTTTCTTTTAACTTAAAACTAA i proCoq1.NW_012140747v1 C 0 I 5 s canFam3.chr13 47997378 75 + 63241923 ACCTTATGACC-GAAACTGG-------------------------ATCA---GGGGGAAAAAAGCATTCAGAA--TAATCAGTCTTTTATTTTGGTTCTGTTTTTT- i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1781328 451 + 3286835 I e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8607223 254 + 8790067 I a score=1314519.000000 s hg38.chr4_KI270787v1_alt 55238 170 + 111943 AGAGAGAATGGTGACATG--CAATTTGGAATGAATTGCACA---GTTAATAATTTAACTTTTTTGGAGGTGATTAAGAAGAAACAGCTTTGGCAAGTTGAAGCATCATATTCTGACTTCCCTACAAACTATGATATTAGGATCCTTGGGACCATAAGCATTTTAGTCCATGGCTC s panTro5.chr4 119619921 170 - 194502333 AGAGAGAATGGTGACATG--CAATTTGGAATGAATTGCACA---GTTAATAATTTAACTTTTTTGGAGGTCATTAAGAAGAAACAGCTTTGGCAAGTTGAAGCATCATATTCTGACTTCCCTACAAACTATGATATTAGGATCCTTGGGACCATAAGCATTTTAGTCCATGGCTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121033332 170 - 195804263 AGAGAGAATGGTGACATG--CAATTTGGAATGAATTGCACA---GTTAATAATTTAACTTTTTTGGAGGTCATTAAGAAGAAACAGCTTTGGCAAGTTGAAGCATCATATTCTGACTTCCCTACAGACTATGACATTAGGATCCTTGGGACCATAAGCATTTTAGTCCATGGCTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4464601 170 - 17550833 AGAGAGAATGGTGACATG--CAATTTGGAATGAATTGCACA---GTTAATAATTTAACTTTTTTGGAGGTGATTAAGAAGAAACAGCTTTGGCAAGTTGAAGCATCATATTCTGACTTCCCTACAAACTATGACATTAGGATCCTTGGGACCATAAGCATTTTAGTCCATGGCTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69337491 170 - 118206036 AGAGAGAGTGGTGACATG--CAATTTGGAATGAATCGCAGA---GTTAATAATTTAACTTTTTTGGAGGTGATTAAGAAGAAACAACTTTGGCAAGCTGAAGCATCATATTCTGACTTCCCTACAAACTATGACATTAGGATCCTTGGGACCATAAGCATTTTAGTCCATGGCTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111541340 161 - 190429646 AGAGAGAATGGTGACATG--CAATTTGGAATGAATTGCAGA---GTTAATAATTTTACTTTTTTGGAGGTGATTAAGAAGAAACAACTTTGGCAAGTTGAAGCATCATATTCTGACCTCCCTACAAACTATGACATTA---------GGACCATAAGCTTTTTAGTCCATGGCTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110709478 161 - 189454096 AGAGAGAATGGTGACATG--CAATTTGGAATGAATTGCAGA---GTTAATAATTTTACTTTTTTGGAGGTGATTAAGAAGAAACAACTTTGGCAAGTTGAAGCATCATATTCTGACCTCCCTACAAACTATGACATTA---------GGACCATAAGCTTTTTAGTCCATGGCTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13277510 159 + 26754465 --AGAGAATGGTGACATG--CAATTTGGAATGAATTGCAGA---GTTAATAATTTTACTTTTTTGAAGGTGATTAAGAAGAAACAACTTTGGCAAGTTGAAGCATCATATTCTGACCTCCCTACAAACTATGACATTA---------GGACCATAAGCATTTTAGTCCATGGCTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4178774 161 - 5137665 AGAGAGAATGGTGACATG--CAATTTGGAATGAATTGCAGA---GTTAATAATTTTACTTTTTTGGAGGTGATTAAGAAGAAACAACTTTGGCAAGTTGAAGCATCATATTCTGACCTCCCTACAAACTATGACATTA---------GGACCATAAGCTTTTTAGTCCATGGCTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122893618 170 - 135778131 AGAGAGAATGGTGACATG--CAATTTGGAAAGAATTGCAGA---GTTAATAATTTTACTTTTTTGGAGGTGATTAAGAAGAAACAGCTTTGGCAAGTTGAAGCATCATATTCTGACCTCCCTACAAACTATGACATTAGGATCCTTGGGACCATAAGCATTTTAGTCCATGGCTC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1995455 161 + 2427316 AGAGAGAATGGTGACATG--CAATTTGGAATGAATTGCAGA---GTTAATAATTTTACTTTTTTGGAGGTGATTAAGAAGAAACAACTTTGGCAAGTTGAAGCATCATATTCTGACCTCCCTACAAACTATGACATTA---------GGACCATAAGCTTTTTAGTCCATGGCTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1289038 169 + 1448899 AGAGAGAATGGTGACATG--CAATTTAGAATGAATTGCAGA---GTTAATAATTTTACTTTTTTGGAGGTGATTAAGAAGAAACAGCTTTGGCAAGTTGAAGCATCATATTCTGACCTCCCTACAAACTATGACATTAGGATTCTTGGGACCA-AAGCATTTTAGTCCATGGCTC i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1781779 170 + 3286835 AGAGAGAATGGTGACATG--TAATTTGGAATGAACTGCAGAGCTGTTAATGGTTTTAC-TTATTGGAGGTGATTAAGCAGAA--AGCTTTGGCAAGTTGAAGCATCTTATTTTAACCTCTCTACAAACTATGACATTAGGATCACTGGGACCATAAGCATTTGAGTCCACTGCTc i micMur3.chrUn_NW_017968520v1 I 451 I 914 s proCoq1.NW_012140747v1 1869760 172 + 4188776 AGAGAGAATGGTGACATG--CAATTTGGAATCAAGTGCAGAGCTGTTAATGGTTTTAC-TTTTTGGAGGTGATTAAGAAGAAAGAGCTTTGGCAAGTTGAGGCATCTTATTTTAACCTCTCTACAAATTATGACATTAGCATCACTGGGAACATAAGTATTTGAGTCCATTGCTC i proCoq1.NW_012140747v1 I 5 I 922 s canFam3.chr13 47997453 173 + 63241923 AGAGAGAATGGTTGTGTGTACAACTTGGAATGAACTGCAGAGCTGCCAATGGTGTTACTCTTCTG-AGGAGATAAAGAAGAAATGGCTTTGGAAACTTGAAACGTCTTATTTTGGACTCCTTA-AAACTATGACAGTCGGTTCACTGGGACCATATGCATTTTGGGTTATTGCTC i canFam3.chr13 C 0 C 0 e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8607223 254 + 8790067 I a score=490654.000000 s hg38.chr4_KI270787v1_alt 55408 59 + 111943 AAAATGGCTATTGCTATTTTAGGAGAGCAGACTAAAGTTTTCGAGATAAAATTTGCATT s panTro5.chr4 119620091 59 - 194502333 AAAATGGCTATTGCTATTTTAGGAGAGCAGACTAAAGTTTTCGAGAAAAAATTTGCATT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121033502 59 - 195804263 AAAATGGCTATTGCTATTTTAGGAGAGCAGACTAAAGTTTTTGAGAAAAAATTTGCATT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4464771 59 - 17550833 AAAATGGCTATTGCTATTTTAGGAGAGCAGACTAAAGTTTTCGAGATAAAATTTGCATT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69337661 59 - 118206036 AAAATGGCTATTGCTATTTTAGGAGAGCAGACTAAAGTTTTCGAGAGAAAATTTGCACT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111541501 58 - 190429646 -AAATGGCTATTGCTATTTTAGGAGAGCAGACTAAAGTTTTGGAGATAAAATTTGCATT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110709639 58 - 189454096 -AAATGGCTATTGCTATTTTAGGAGAGCAGACTAAAGTTTTGGAGATAAAATTTGCATT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13277669 58 + 26754465 -AAATGGCTATTGCTATTTTAGGAGAGCAGACTAAAGTTTTGGAGATAAAATTTGCATT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4178935 58 - 5137665 -AAATGGCTATTGCTATTTTAGGAGAGCAGACTAAAGTTTTGGAGATAAAATTTGCATT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122893788 58 - 135778131 -AAATGGCTATTGCTATTTTAGGAGAGCAGACTAAAGTTTTGGAGATAAAATTTGCATT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1995616 58 + 2427316 -AAATGGCTATTGCTATTTTAGGAGAGCAGACTAAAGTTTTGGAGATAAAATTTGCATT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1289207 58 + 1448899 -AAATGGCTATTGCTATTTTAGGAGAGCAGACTAAAGTTTTGGAGATAAAATTTGCATT i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1782863 59 + 3286835 aaaaTAGCTATTTTTATTTTTGGAAAGCAGACTAAAGTTTTGGAGATAAAATTTGCCTG i micMur3.chrUn_NW_017968520v1 I 914 C 0 s proCoq1.NW_012140747v1 1870854 59 + 4188776 AAAATAGCTGTTGTTATTTTTGGAGAGCAGACTAAAGTTTTGGAGATAAAATTTGCATT i proCoq1.NW_012140747v1 I 922 C 0 s canFam3.chr13 47997626 53 + 63241923 ------AGTGTTACTGTTTGTGCAGAGCAGACGCAAGTTTTGGAGATAAAATTTGCATT i canFam3.chr13 C 0 C 0 e mm10.chr5 76409566 992 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8607223 254 + 8790067 I a score=628824.000000 s hg38.chr4_KI270787v1_alt 55467 69 + 111943 AAGAATC-AGTTTCACAGAACCCAGAGCTTGATCAAATGCTGATTACCACAATA--TTTCTCTATCTGTAAC s panTro5.chr4 119620150 69 - 194502333 AAGAATC-AGTTTCACAGAACCCAGAACTTGATCAAATGCTGATTACCACAATA--TTTCTCTATCTGTAAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121033561 69 - 195804263 AAGAATC-AGTTCCACAGAACCCAGAACTTGATCAAATGCTGATTACCACAATA--TTTCTCTATCTGTAAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4464830 69 - 17550833 AAGAATC-AGTTTCACAGAACCCAGAACTTGATCAAATGCTGATTACCACAATA--TTTCTCTATCTGTAAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69337720 69 - 118206036 AAGAATC-AGTTTCACAGAACCCAGAACTTGATCAAATGCTGATTACCACAATA--TTTCTCTATCTGTAAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111541559 69 - 190429646 AAGAATC-AGTTTCACAGAACCCAGAACTTGATCAAATGCTGATTACCACAATA--ATTCTCTATCTGTAAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110709697 69 - 189454096 AAGAATC-AGTTTCACAGAACCCAGAACTTGATCAAATGCTGATTACCACAATA--ATTCTCTATCTGTAAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13277727 69 + 26754465 AAGACTC-AGTTTCACAGAACCCAGAACTTGATCAAATGCTGATTACCACAATA--ATTCTCTATCTGTAAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4178993 69 - 5137665 AAGAATC-AGTTTCACAGAACCCAGAACTTGATCAAATGCTGATTACCACAATA--ATTCTCTATCTGTAAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122893846 69 - 135778131 AAGAATC-AGTTTCACAGAACCCAGAACTTGATCAAATGCTGATTACCACAATA--ATTCTCTATCTGTAAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1995674 69 + 2427316 AAGAATC-AGTTTCACAGAACCCAGAACTTGATCAAATGCTGATTACCACAATA--ATTCTCTATCTGTAAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1289265 69 + 1448899 AAGAATC-AGTTTCACAGAACCCAGAACTTGATCAAATGCTGATTACCACAGTA--TTTCTCTATCTGTAAC i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1782922 71 + 3286835 GAGAACC-AGTTTCACAGGATCCTGAACTTGATCAAATGCTAATTACTCTAATATTTTTCTGTATCTGTGAC i micMur3.chrUn_NW_017968520v1 C 0 I 9 s proCoq1.NW_012140747v1 1870913 69 + 4188776 AAGAACC-AATTTCATAGGATCCTGAACTTAATCAAATGCTAATTGCTACAATA--TTTCTGTATCTGTGAC i proCoq1.NW_012140747v1 C 0 I 4 s mm10.chr5 76410558 67 + 151834684 aagaaTCAAGTTTCCCAGAACCCCAAAGCTGACCAAATGCTGATAATTACA-----TTTCTGTATCTGTAAC i mm10.chr5 I 992 I 3 s canFam3.chr13 47997679 69 + 63241923 GAGAACC-AATTTCAAATAATCCTGAGCTTGACCAAATGCCAATTACTAGAATA--TTTCTGTGTCTATAAT i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8607223 254 + 8790067 I a score=56615.000000 s hg38.chr4_KI270787v1_alt 55536 9 + 111943 TGGCACTAT s panTro5.chr4 119620219 9 - 194502333 TGGCACTAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121033630 9 - 195804263 TGGCACTAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4464899 9 - 17550833 TGGCACTAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69337789 9 - 118206036 TGGCACTAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111541628 9 - 190429646 TGGCACTAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110709766 9 - 189454096 TGGCACTAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13277796 9 + 26754465 TGGCACTAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4179062 9 - 5137665 TGGCACTAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122893915 9 - 135778131 TGGCACTAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1995743 9 + 2427316 TGGCACTAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1289334 9 + 1448899 TGGCACTAT i colAng1.NW_012119221v1 C 0 C 0 s proCoq1.NW_012140747v1 1870986 9 + 4188776 GAACACTGT i proCoq1.NW_012140747v1 I 4 C 0 s mm10.chr5 76410628 9 + 151834684 AAACAATAT i mm10.chr5 I 3 C 0 s canFam3.chr13 47997748 8 + 63241923 TAGGAACA- i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1782993 9 + 3286835 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8607223 254 + 8790067 I a score=694498.000000 s hg38.chr4_KI270787v1_alt 55545 80 + 111943 CTATGAAAAGCAGCAGATTTT-CATAACCATTTCCATCACTAATAAAGT--GGCGCATTTGCAAAGTTTCTATTAAGATACGT s panTro5.chr4 119620228 80 - 194502333 CTATGAAAAGCAGCAGATTTT-CATAACCATTTCCATCACTAATAAAGT--GGCGCATTTGCAAAGTTTCTATTAAGATACGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121033639 80 - 195804263 CTATGAAAAGCAGCAGATTTT-CATAACCATTTCCATCACTAATAAAGT--GGCGCATTTGCAAAGTTTCTATTAAGATACGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4464908 80 - 17550833 CTATGAAAAGCAGCAGATTTT-CATAACCATTTCCATCACTAATAAAGT--GGCGCATTTGCAAAGTTTCTATTAAGATACGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69337798 80 - 118206036 CTATGAAAAGTAGCAGATTTT-CATAACCATTTCCATCACTAATAAAGT--GGCACATTTGCAAAGTTTCTATTAAGATATAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111541637 80 - 190429646 CTATGAAAAGCAGCACATTTT-CATAACCATTTCCATCACCAATAAAGT--GGCACATTTGCAAAGTTTCTGTTAAGATATGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110709775 80 - 189454096 CTATGAAAAGCAGCACATTTT-CATAACCATTTCCATCACCAATAAAGT--GGCACATTTGCAAAGTTTCTGTTAAGATATGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13277805 80 + 26754465 CTATGAAAAGCAGCAGATTTT-CATAACTATTTCCATCACCAATAAAGT--GGCACATTTGCAAAGTTTCTGTTAAGATATGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4179071 80 - 5137665 CTATGAAAAGCAGCAGATTTT-CATAACCATTTCCATCACCAATAAAGT--GGCACATTTGCAAAGTTTCTGTTAAGATATGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122893924 80 - 135778131 CTATGAAAAGCAGCAGATTTT-CATAACCATTTCCATCACCAATAAAGT--GGCACATTTGCAAAGTTTCTGTTAAGATATGT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1995752 80 + 2427316 CTATGAAAAGCAGCAGATTTT-CATAACCATTTCCATCACCAATAAAGT--GGCACATTTGCAAAGTTTCTGTTAAGATATGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1289343 79 + 1448899 CTATGAAAAGCAGCAGATTTT-CATAACCATTTCCATCACCAATAAAGT--GGCGCATTTGCAAAGTTTCTG-TAAGATACGT i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1783002 72 + 3286835 CTATGAAAAGCAGCAGATTTTTCACAACCATTTCTATCACTAATGAAGT--GGCATGTTTGCA---------TTAAAATAAAT i micMur3.chrUn_NW_017968520v1 I 9 I 4 s proCoq1.NW_012140747v1 1870995 72 + 4188776 CTGTGAAAAGCTGCAGATTTTACACAACCATTTCTATCATTAACAAAGT--GGTATGTTTGCA---------TTAAAATATAT i proCoq1.NW_012140747v1 C 0 I 4 s mm10.chr5 76410637 82 + 151834684 TTACACAGGGCAGTAGATTTT-CAAGGCCATTTCCATCACTGATAAAGTGGGGGGCATTTGCAAAAGTCCTATTAAAATGTGG i mm10.chr5 C 0 C 0 s canFam3.chr13 47997756 80 + 63241923 CTATGAAAACTAGCAGATTTT-CACAATCATTTCCACCATTAATTAAGT--GGCGCATTTGCAGAGTTTCTATTAAAATTTAT i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8607223 254 + 8790067 I a score=1282671.000000 s hg38.chr4_KI270787v1_alt 55625 155 + 111943 ----TTATTCTCTCAGAATTTTATAGCCTTGGATTTTAA--GAATTTAATGT-AAAACCCACATGAAGCTAAATGTTAACAAAAC--AGTC--AA-TTCTTCCTAACAGAAGAAGTATTTGTG---GCT---GTATAAGTTTGAAGAATAAAAAGTAATTCAGATAAATGGAC s panTro5.chr4 119620308 155 - 194502333 ----TTATTCTCTCAGAATTTTATAGCCTTGGATTTTAA--GAATTTAATGT-AAAACCCACATGAAGCTAAATGTTAACAAAAC--AGTC--AA-TTCTTCCTAACAGAAGAAGCATTTGTG---GCT---GTATAAGTTTGAAGAATAAAAAGTAATTCAGATAAATGGAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121033719 155 - 195804263 ----TTATTCTCTCAGAATTTTATAGCCTTGGATTTTAA--GAATTTAATGT-AAAACCCACATGAAGCTAAATGTTAACAAAAC--AGTC--AA-TTCTTCCTAACAGAAGAAGCATTTGTG---GCT---GTATAAGTTTGAAGAATAAAAAGTAATTCAGATAAATGGAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4464988 155 - 17550833 ----TTATTCTCTCAGAATTTTATAGCCTTGGATTTTAA--GAATTTAATGT-AAAACCCACATGAAGCTAAATGTTAACAAAAC--AGTC--AA-TTCTTCCTAACAGAAGAAGCATTTGTG---GCT---GCATAAGTTTGAAGAATAAAAAGTAATTCAGATAAATGGAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69337878 155 - 118206036 ----TTATTCTCTCAGAATTTTAAAGCCTTGGATTTTAA--GAATTTAATGT-AAAACCCACATGAAGCTAAATGTTAACAAAAC--AGTC--AA-TTCTTCCTAACAGAAGAAGCATGTGTG---GCT---GTATAAGTTTGAAGAATAAAAAGTAATTCAGATAAATGGAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111541717 154 - 190429646 ----TTATTCTCTCAGAATTTTAAAATCTTGGATTTTAA--GAATTTAATGT-AAAACCCACATGAAGTT-AATGTTAACGAAAC--AGTC--AA-TTCTTCGTAACAGAAGAAGCATTTGTG---GCT---GTATAAGTTTGAAGAATAAAAAGTAATTCAGATAAATGGAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110709855 154 - 189454096 ----TTATTCTCTCAGAATTTTAAAATCTTGGATTTTAA--GAATTTAATGT-AAAACCCACATGAAGTT-AATGTTAACGAAAC--AGTC--AA-TTCTTCGTAACAGAAGAAGCATTTGTG---GCT---GTATAAGTTTGAAGAATAAAAAGTAATTCAGATAAATGGAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13277885 154 + 26754465 ----TTATTCTCTCAGAATTTTAAAATCTTGGATTTTAA--GAATTTAATGT-AAAACCCACATGAAGTT-AATGTTAATGAAAC--AGTC--AA-TTCTTCGTAACAGAAGAAGCATTTGTG---GCT---GTATAAGTTTGAAGAATAAAAAGTAATTCAGATAAATGGAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4179151 154 - 5137665 ----TTATTCTCTCAGAATTTTAAAATCTTGGATTTTAA--GAATTTAATGT-AAAACCCACATGAAGTT-AATGTTAACGAAAC--AGTC--AA-TTCTTCGTAACAGAAGAAGCATTTGTG---GCT---GTATAAGTTTGAAGAATAAAAAGTAATTCAGATAAATGGAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122894004 154 - 135778131 ----TTATTCTCTCAGAATTTTAAAACTTTGGATTTTAA--GAATTTAATGT-AAAACCCACATGAAGTT-AATGTTAACGAAAC--AGTC--AA-TTCTTCGTAACAGAAGAAGCATTTGTG---GCT---GTATAAGTTTGAAGAATAAAAAGTAATTCAGATAAATGGAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1995832 154 + 2427316 ----TTATTCTCTCAGAATTTTAAAATCTTGGATTTTAA--GAATTTAATGT-AAAACCCACATGAAGTT-AATGTTAACGAAAC--AGTC--AA-TTCTTCGTAACAGAAGAAGCATTTGTG---GCT---GTATAAGTTTGAAGAATAAAAAGTAATTCAGATAAATGGAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1289422 154 + 1448899 ----TTATTCTCTCAGAATTTTAAAACCTTGGATTTTAA--GAATTTAATGT-AAAACCCACATGAAGTT-AATATTAACAAAAC--AGTC--AG-TTCTTCATAACAGAAGAAGCATTTGTG---GCT---GTGTAAGTTTGAAGAATAAAAAGTAATTCAGATAAATGGAC i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1783078 160 + 3286835 ----TACTTCTCTCAGAAATCTAAAGGCTTAGATTTTAATTTAATTTAATGT-AAGACCTGCAGGAAGCTAAATTTTAACAAAACAGAGTC--AATTTCTTCATAACAGAAAAAGCATTTGTG---GCT---ATACAAGTTTGGAGAATAAAACATAATTCAGATAAAATGGA i micMur3.chrUn_NW_017968520v1 I 4 C 0 s proCoq1.NW_012140747v1 1871071 157 + 4188776 ----TACTTCTCTCAGAATTTTAAAGGCTTATATTTTCATTTAATTTAATGT-AAAACCTGCAGGAAGCTAAATTTTAACAAAAC--AGTC--AA-TTCTTCATAACAGAAAAAGCATTTGTG---GCT---ATACAAGTTTGGAGAATAAAAAGTAATTCAGATAAACAGAC i proCoq1.NW_012140747v1 I 4 C 0 s otoGar3.GL873602 8607477 153 + 8790067 ----tcagcctcccagaatgct--gggattata----ggcatgaatcaccgt-gcccagccCAGGACACTAAATTGTAACAAAACAGAGTT--AA-TCCATCATTATAGAAAAAGCATTTGTG---GCT---ATACAAGTTTGGAGAAGAAAAAGCAATTCAGATAAAGGGAC i otoGar3.GL873602 I 254 C 0 s mm10.chr5 76410719 139 + 151834684 -------CTATTACTGAAAGCAAAGAATTTTCTCCTTAA--AAAT-----------------GTGAGGCTAAATTTTAACAAAAA--CGTCTTGA-CTCCTCAT-ACAAAAAAGGTGTATGTG---ATTTGCACATGTGATTTAGAGGCTAAAAGT-ATTAAAATACGTGGGC i mm10.chr5 C 0 I 1775 s canFam3.chr13 47997836 164 + 63241923 TTATTACTTCTCTCAGAATTTTAAATGTTTGGATTTTAA--GCACTGAATGTAAAAATCTGCATGAGGCTATATTTTATATAAGTTGAGTC--AA-TTCCTCATAGCAGAAAAAGCATTTGTGTTTATT---ACACCAGTGTGG-GAAAAAAAAATAATTCAGATAAATGGAC i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=1116514.000000 s hg38.chr4_KI270787v1_alt 55780 130 + 111943 TTTCTAAAGGACTCGTTTT--GGCATAAAAACAGTTTCAGAAAGATGGTATATAAAGTTATGTCCAGAAACTGTAGAGTTGGTATTTAAATAAATATTAATAGGAAAGTTCTGCTAAGCCACTGCAGGAACA---- s panTro5.chr4 119620463 130 - 194502333 TTTCTAAAGGACTCGTTTT--GGCATAAAAACAGTTTCAGAAAGATGGTATATAAAGTTATGTCCAGAAACTATAGAGTTGGTATTTAAATAAATATTAATAGGAAAGTTCTGCTAAGCCACTGCAGGAACA---- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121033874 130 - 195804263 TTTCTAAAGGACTCGTTTT--GGCATAAAAACAGTTTCAGAAAGATGGTATATAAAGTTATGTCCAGAAACTATAGAGTTGGTATTTAAACAAATATTAATAGGAAAGTTCTGCTAAGCCACTGCAGGAACA---- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4465143 129 - 17550833 TTTCTAAAGGACTCGTTTT--GGCATAAAAACAGTTTCAGAAAGATGGTATAT-AAGTTATGTCCAGAAACTATAGAATTGGTATTTAAATAAATATTAATAGGAAAGTTCTGCTAAGCCACTGCAGGAACA---- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69338033 128 - 118206036 TTTCTAAAGGACTGTTTTC--AGCATAAAAACAGTTTCAGAAAGATGGTATA--AAGTTATGTCCAGAAACTATAGAGTTGGTATTTCAATAAATGTTAATAGGAAAGTCCTGCTAAGCCACTGCAGGAACA---- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111541871 128 - 190429646 TTTCTAAAGGACTCTTTTT--GGCATAAAAACAGTTTCAGAAAGATGGTATA--AAGTTATGTCCAGAAACTATAGAGTTGGTATTTAAATAAATGTTAATAGGAAAGTTCTGCTAAGCCACTGCAGGAACA---- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110710009 128 - 189454096 TTTCTGAAGGACTCTTTTT--GGCATAAAAACAGTTTCAGAAAGATGGTATA--AAGTTATGTCCAGAAACTATAGAGTTGGTATTTAAATAAATGTTAATAGGAAAGTTCTGCTAAGCCACTGCAGGAACA---- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13278039 128 + 26754465 TTTCTAAAGGACTCTTTTT--GGCATAAAAACAGTTTCAGAAAGATGGTATA--AAGTTATGTCCAGAAACTATAGAGTTGGTATTTAAATAAATGTTAATAGGAAAGTTCTGCTAAGCCACTGCAGGAACA---- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4179305 128 - 5137665 TTTCTAAAGGACTCTTTTT--GGCATAAAAACAGTTTCAGAAAGATGGTATA--AAGTTATGTCCAGAAACTATAGAGTTGGTATTTAAATAAATGTTAATAGGAAAGTTCTGCTAAGCCACTGCAGGAACA---- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122894158 128 - 135778131 TTTCTAAAGGACTCTTTTT--GGCATAAAAACAGTTTCAGAAAGATGGTATA--AAGTTATGTCCAGAAACTATAGAGTTGGTATTTAAATAAATGTTAATAGGAAAGTTCTGCTAAGCCACTGCAGGAACA---- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1995986 128 + 2427316 TTTCTAAAGGACTCTTTTT--GGCATAAAAACAGTTTCAGAAAGATGGTATA--AAGTTATGTCCAGAAACTATAGAGTTGGTATTTAAATAAATGTTAATAGGAAAGTTCTGCTAAGCCACTGCAGGAACA---- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1289576 128 + 1448899 TTTCTAAAGGACTCTTTTT--GGCATAAAAACAGTTTCAGAAAGATGGTATA--AAGTTATGTCCAGAAACTATAGAGTTGGTATTTAAATAAATGTTAATAGGAAAGTTCTGCTAAGCCACTGCAGGAACA---- i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1783238 128 + 3286835 CTTTATAATGGCTTTTTTGGAGGCATAAAAACAGTTTCAGGAATATGATAT----AGTTAAAGCCAGAAACTATAGAGTTGGCTTTTAAATAAATGTAAGTAGGAATGTCCTGCTAAGCCACTACAGTAACA---- i micMur3.chrUn_NW_017968520v1 C 0 I 294 s proCoq1.NW_012140747v1 1871228 130 + 4188776 GTTCTAAATGGCTTTTTTGGAGGCATAAAAACAGTTTCAAAAATATGATATA--AAGTTATACCCAGAGACTACAGAGTTGGCTTTTAAATAAATGTGAGTAGGAATGTCCTGCTGAGCCACTACAGTAACA---- i proCoq1.NW_012140747v1 C 0 I 6 s otoGar3.GL873602 8607630 129 + 8790067 TTTCTAAAGGGC-TTTCAGGGGGCCTAAAAATAGTTTCTGAAATATGGTGTA--AAGTTATACTCGGAAACTATAGAGTTGGTTTTTAAATAAAGGTAAGTAGGAATGTCCTGCTTGGCCACTGCAGTGAGA---- i otoGar3.GL873602 C 0 I 6 s canFam3.chr13 47998000 132 + 63241923 TTTCTAAAGGGCACTTTTT--AGCATAAAAACAGTTTAAGAAGTATGATAGA--AAATTATACCCATGAATTACTGGGTTGGTATTTAAATGTATGTAAACAGGAGTGCACTGTTAAGCAGCTAGAGTAATAGTAA i canFam3.chr13 C 0 C 0 e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=2137169.000000 s hg38.chr4_KI270787v1_alt 55910 284 + 111943 TGTATCCTAATGGGTGTGCCCAGCTGGCAGCTTTCCAGTTGTACAGCCTCATATGACTCACTGCGT-TGG-------GGCCTTTGGCCTGGACTACCTGCTCCAAATGCACACAAATACAGAGCTTCTTACTCGGTCTCCCCTGGAACACCTCACCTCACCTTTCAGACTTCCTATTACAGCTGTGGCAATGCTGCCT----------TAGGTGGACTCCTGCCTGGAAAGAA-ACAGGTTTTATGGTGGTGCAATGCCCCAGGTGGCATGCTTGCTGATCTTCAAGCTGTACTAGCAGAGAC s panTro5.chr4 119620593 284 - 194502333 TGTATCCTAATGGGTGTGCCCAGCTGGCAGCTTTCCAGTTGTACAGCCTCATATGACTCACTGTGT-TGG-------GGCCTTTGGCCTGGACTACCTGCTCCAAATGCACACAAATACAGAGCTTCTTACTCGGTCTCCCCTGGAACACCTCACCTCACCTTTCAGACTTCCTATTACAGCTGTGGCAATGCTGCCT----------TAGGTGGACTCCTGCCTGGAAAGAA-ACAGGTTTTATGGTGGTGCAATGCCCCAGGTGGCATGCTTGCTGATCTTCAAGCTGTACTAGCAGAGAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121034004 284 - 195804263 TGTATCCTAATGGGTGTGCCCAGCTGGCAGCTTTCCAGTTGTACAGCCTCATATGACTCACTGTGT-TGG-------GGCCTTTGGCCTGGACTACCTGCTCCAAATGCACACAAATACAGAGCTTCTTACTCGGTCTCCCCTGGAACACCTCACCTCACCTTTCAGACTTCCTATTACAGCTGTGGCAATGCTGCCT----------TAGGTGGACTCCTGCCTGGGAAGAA-ACAGGTTTTATGGTGGTGCAATGCCCCAGGTGGCATGCTTGCTGATCTTCAAGCTGTACTAGCAGAGAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4465272 284 - 17550833 TGTGTCCTAATGGGTGTGCCCAGCTGGCAGCTTTCCAGTTGTACAGCCTCATATGACTCACTGTGT-TGG-------GGCCTTTGGCCTGGACTACCTGCTCCAAATGCACACAAATACAGAGCTTCTTACTCGGTCTCCCCTGGAACACCTCACCTCACCTTTCAGACTTCCTATTACAGCTGTGGCCATGCTGCCT----------TAGGTGGACTCCTGCCTGGAAAGAA-ACAGGTTTTATGGTGGTGCAGTGCCCCAGGTGGCATGCTTGCTGATCTTCAAGCTGTACTAGCAGAGAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69338161 284 - 118206036 TGTATCCTAACGGGTGTGCCCAGCTGGCAGCTTTCCAGTTGTACAGCCTCATATGACTCACTCTGC-TGG-------GGCCTTTGGCCTGAACTACCTGCTCCAAATGCACACAAATACACAGCTTCTTACTCGGTCTCCCCTGGAACACCTCACCTCACCTTTCAGACTTCCTATTACAGCTGTGGCAATGCTGCCT----------TAGGTGGACTCCTGCCTGGAAAGAA-ACAGGTTTTATGGTGGTGCAATGCCCCAGGTGGCATGCTTGCTGATCTTCAAGCTGTACTAGCAGAGAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111541999 284 - 190429646 TGTATCCTAATGGGTGTGCCCAGCTGGCAGCTTTCCAGTTGCACAGCCTCATATGATTCACTCTGT-TGG-------CGCCTTTGGCCTGGACTACCTGCTCCAAATGCACACAAATACAGAGCTTCTTACTCGGTCTGCCCCGGAACACCTCACCTCGCCTTTCAGACTTCCCATGACAGCTGTGGTAATGCTGCCT----------TAGGTGGACTCCTGCCTGGAACGAA-ACAGGTTTTATGGCGGTGCAATGCCCCAGGTGGCATGCTTGCTGATCTTCAAGCTGTGCTAGCAGAGAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110710137 284 - 189454096 TGTATCCTAACGGGTGTGCCCAGCTGGCAGCTTTCCAGTTGCACAGCCTCATATGATTCACTCTGT-TGG-------CGCCTTTGGCCTGGACTACCTGCTCCAAATGCACACAAATACAGAGCTTCTTACTCGGTCTGCCCCGGAACACCTCACCTCGCCTTTCAGACTTCCTATGACAGCTGTGGTAATGCCGCCT----------TAGGTGGACTCCTGCCTGGAACGAA-ACAGGTTTTATGGTGGTGCAATGCCCCAGGTGGCATGCTTGCTGATCTTCAAGCTGTGCTAGCAGAGAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13278167 284 + 26754465 TGTATCCTAACGGGTGTGCCCAGCTGGCAGCTTTCCAGTTGCACAGCCTCATATGATTCACTCTGT-TGG-------CGCCTTTGGCCTGGACTACCTGCTCCAAATGCACACAAATACAGAGCTTCTTACTCGGTCTGCCCCGGAACACCTCACCTCGCCTTTCAGACTTCCTATGACAGCTGTGGTAATGCCGCCT----------TAGGTGGACTCCTGCCTGGAACGAA-ACAGGTTTTATGGCGGTGCAATGCCCCAGGTGGCATGCTTGCTGATCTTCAAGCTGTGCTAGCAGAGAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4179433 284 - 5137665 TGTATCCTAACGGGTGTGCCCAGATGGCAGCTTTCCAGTTGCACAGCCTCATATGATTCACTCTGT-TGG-------CGCCTTTGGCCTGGACTACCTGCTCCAAATGCACACAAATACAGAGCTTCTTACTCGGTCTGCCCCGGAAAACCTCACCTCGCCTTTCAGACTTCCTATGACAGCTGTGGTAATGCCGCCT----------TAGGTGGACTCCTGCCTGGAACGAA-ACAGGTTTTATGACGGTGCAATGCCCCAGGTGGCATGCTTGCTGATCTTCAAGCTGTGCTAGCAGAGAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122894286 284 - 135778131 TGTATCCTAAGGGGTGTGCCCAGCTGGCAGCTTTCCAGTTGCACAGCCTCATATGATTCACTCTGT-TGG-------CGCCTTTGGCCTGGACTACCTGCTCCAAATGCACACAAATACAGAGCTTCTTACTCGGTCTGCCCCGGAACACCTCACCTCGCCTTTCAGACTTCCTATGACAGCTGTGGTAATGCCGCCT----------TAGGTGGACTCCTGCCTGGAACGAA-ACAGGTTTTATGGCGGTGCAATGCCCCAGGTGGCATGCTTGCTGATCTTCAAGCTGTGCTAGCAGAGAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1996114 284 + 2427316 TGTATCCTAACGGGTGTGCCCAGCTGGCAGCTTTCCAGTTGCACAGCCTCATATGATTCACTCTGT-TGG-------CGCCTTTGGCCTGGACTACCTGCTCCAAATGCACACAAATACAGAGCTTCTTACTCGGTCTGCCCCGGAACACCTCACCTCGCCTTTCAGACTTCCTATGACAGCTGTGGTAATGCCGCCT----------TAGGTGGACTCCTGCCTGGAACGAA-ACAGGTTTTATGACGGTGCAATGCCCCAGGTGGCATGCTTGCTGATCTTCAAGCTGTGCTAGCAGAGAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1289704 283 + 1448899 TGTATCCTAATGGGTGTGTCCAGCTGGCAGCTTTCCAGTTGCACAGCCTCATATGATTCACTCTGT-TGG-------CGCCTTTGGCCTGGACTACCTGCTCTGAATGCACACAAATATAGAGCTTCTTACTCAGTCTGCCCC-GAACACCTCACCTCACCTTTCAGACTTCCTATGACAGCTGTGGTAATGCCGCCT----------CAGGTGGACTCCTGCCTGGAATGAA-ACAGGTTTTATGGCGGTGCAATGCCCCAGGTGGCATGCTTGCTGATCTTCAAGCTGTGCTAGCAGAGAC i colAng1.NW_012119221v1 C 0 C 0 s proCoq1.NW_012140747v1 1871364 299 + 4188776 TGTATCCTAACTGGTATTCCTAGCCGGCAGCTTTCTAGATGGGCAGGCTCCTGTGACTCTCTCTGTCTGG-ATATTAGGCCTTTGGCCTGAACTACCTGTTCTGAATGCACACAGATGTGGAGCTCTTTACTTGGTCTCCTCTGCATCGCCCCACCTCACCTTCCAGACTTCCTGTTACAATCTTGGCAATGCTGCCT-GGGCTCCCCTAGGCGGTCCCTTGCCTAGAAAGGA-CCAGGTTTTATGATGGCGCAGCAGCCCAGGTGGCATTCTTGCTGATCCTGAAGCTGTACTGGCAGAGG- i proCoq1.NW_012140747v1 I 6 C 0 s otoGar3.GL873602 8607765 291 + 8790067 TACATCCTGGCAGATGTTCTTGGCCGGCCTCCTTTCAGGAGTGTGGGCTCCTGTGACTCGCTCTGG-TGG-GTGTGTGGCCTTTGGTCTGGACTGACCATGCTGAATGTGCACCAGGATGGGGCTCTCCATGTGGTCTCC-CTGGGTCATTCCACCTCACCTTTCAGACTT-TGGTCATAGTCTCGGCAATGCTGCCT-GGACTCCTCTACCTGGACCC-TGCCTGTAAAGGA-GCAGGTTTTATGA-----CAGCAGTGCAGGTGGCTTTCCTGCTGGTGCTGAAGCTGTACCAGCAGAGCC i otoGar3.GL873602 I 6 C 0 s canFam3.chr13 47998132 300 + 63241923 CATGCCCTAATGCGTTTTCCCAGCTGATAGCTTTGC--CTTCGAAGGCCCCTGTAACTCATTCTGT-GAGTGTATTTGGCCTTGGGCCTGAACCACCTGTTCTGAGGACACACAGCTTCTGAGGTCTTTATCTGGTCTTTTGTTGATGACCTCACTTCATCTTTCAGACTTCATATTACAGCCTTGACTTTGCTGCCTGGGGCTCCACTAAGTGGACTCCTGTCTTGAAAGGACCCATGCTTTATGGTGATACAACACCTCAGATGAAACTTTTGCAGATCCTCAAGCTGTCCTAGCAAAGGT i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1783366 294 + 3286835 I e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=341477.000000 s hg38.chr4_KI270787v1_alt 56194 35 + 111943 CAGCAG-TCTCTATCTGGACAGACAGACCACTTCCC s panTro5.chr4 119620877 35 - 194502333 CAGCAG-TCTCTATCCGGACAGACAGACCACTTCCC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121034288 35 - 195804263 CAGCAG-TCTCTATCCGGACAGACAGACCACTTCCC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4465556 35 - 17550833 CAGCAG-TCTCTATCCGGACAGACAGACCACTTCCC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69338445 35 - 118206036 CAGCAG-TCTCTATCCGGACAGACAGACCACTTCCC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111542283 35 - 190429646 CAGCAG-TCTCTATCCAGACAGACAGACCACTTCCC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110710421 35 - 189454096 CAGCAG-TCTCTATCCAGACAGACAGACCACTTCCC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13278451 35 + 26754465 CAGCAG-TCTCTATCCAGACAGACAGACCACTTCCC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4179717 35 - 5137665 CAGCAG-TCTCTATCCAGACAGACAGACCACTTCCC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122894570 35 - 135778131 CAGCAG-TCTCTATCCAGACAGACAGACCACTTCCC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1996398 35 + 2427316 CAGCAG-TCTCTATCCAGACAGACAGACCACTTCCC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1289987 35 + 1448899 CAGCAG-TCTCTATCCAGACAGACAGACCACTTCCC i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1783660 35 + 3286835 CAGCAG-TCTCCATCAGGACAGACAGAACATCTCCC i micMur3.chrUn_NW_017968520v1 I 294 C 0 s proCoq1.NW_012140747v1 1871663 35 + 4188776 CAGCAG-TCTCCATCAGGACAGACAGAACATCTCCC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8608056 36 + 8790067 CAGCAGTTCTCCATCAGGACAGACAGAACATCTCCC i otoGar3.GL873602 C 0 I 3 s canFam3.chr13 47998432 35 + 63241923 CAGCAC-TCTCTGTCAGGACATACAGACCATCTTCC i canFam3.chr13 C 0 C 0 e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=91809.000000 s hg38.chr4_KI270787v1_alt 56229 12 + 111943 AGCTCCACTTTA s panTro5.chr4 119620912 12 - 194502333 AGCTCCACTTTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121034323 12 - 195804263 AGCTCCACTTTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4465591 12 - 17550833 AGCTCCACTTTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69338480 12 - 118206036 AGCTCCACTTTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111542318 12 - 190429646 AGATCCACTTTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110710456 12 - 189454096 AGATCCACTTTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13278486 12 + 26754465 AGATCCACTTTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4179752 12 - 5137665 AGATCCACTTTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122894605 12 - 135778131 AGATCCACTTTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1996433 12 + 2427316 AGATCCACTTTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1290022 12 + 1448899 AGATCCACTTTA i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1783695 12 + 3286835 AGTTCCAATTTA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1871698 12 + 4188776 AGTTCCAATTTA i proCoq1.NW_012140747v1 C 0 C 0 s canFam3.chr13 47998467 12 + 63241923 ACATCCTATTTA i canFam3.chr13 C 0 I 268 e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8608092 3 + 8790067 I a score=16562.000000 s hg38.chr4_KI270787v1_alt 56241 2 + 111943 AA s panTro5.chr4 119620924 2 - 194502333 AA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121034335 2 - 195804263 AA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4465603 2 - 17550833 AA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69338492 2 - 118206036 AA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111542330 2 - 190429646 AA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110710468 2 - 189454096 AA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13278498 2 + 26754465 AA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4179764 2 - 5137665 AA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122894617 2 - 135778131 AA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1996445 2 + 2427316 AA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1290034 2 + 1448899 AA i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1783707 2 + 3286835 AA i micMur3.chrUn_NW_017968520v1 C 0 I 389 s proCoq1.NW_012140747v1 1871710 2 + 4188776 AA i proCoq1.NW_012140747v1 C 0 C 0 e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8608092 3 + 8790067 I e canFam3.chr13 47998479 268 + 63241923 I a score=112746.000000 s hg38.chr4_KI270787v1_alt 56243 16 + 111943 AATCACAGCCTTTCTg s panTro5.chr4 119620926 16 - 194502333 AATCACAGCCTTTCTg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121034337 16 - 195804263 AATCACAGCCTTTCTg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4465605 16 - 17550833 AATCACAGCCTTTCTg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69338494 16 - 118206036 AATCACAGCCTTTCTg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111542332 16 - 190429646 AATCACAGCCTTTCTg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110710470 16 - 189454096 AATCACAGCCTTTCTg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13278500 16 + 26754465 AATCACAGCCTTTCTg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4179766 16 - 5137665 AATCACAGCCTTTCTg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122894619 16 - 135778131 AATCACAGCGTTTCTg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1996447 16 + 2427316 AATCACAGCCTTTCTg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1290036 16 + 1448899 AATCACAGCCTTTCTG i colAng1.NW_012119221v1 C 0 C 0 s proCoq1.NW_012140747v1 1871712 16 + 4188776 AATTGCAGCCTTTCTG i proCoq1.NW_012140747v1 C 0 I 18 e micMur3.chrUn_NW_017968520v1 1783709 389 + 3286835 I e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8608092 3 + 8790067 I e canFam3.chr13 47998479 268 + 63241923 I a score=2014417.000000 s hg38.chr4_KI270787v1_alt 56259 348 + 111943 cttttgttcaaaagtcaaaaaa-tgacagatgttggcagggctgtggagaaaagggaacacttatactcaatgtgaatatattggtggaatgtaaattagtttagccactgtggaaagcagtttagagatttctcaaag----aagagttgaatgaccattcaacccagcaatcccattaccaagtatatacccaaagg-----aaaataaatcattctaccaaaaagacacgcacctgtatattcattgcagcgctattcacaatagcaaggccaggcacagtggctcacacctgtaattccagtgtttttagaggtcaaggcagaaggatcccttgaggccacgagttcaagaaca s panTro5.chr4 119620942 348 - 194502333 cttttgttcaaaagtcaaaaaa-tgacagatgttggcagggctgtggagaaaagggaacacttatactcaatgtgaatatattggtggaatgtaaattagtttagccactgtggaaagcagtttagagatttctcaaag----aagagttgaatgaccattcaacccagcaatcccattaccaagtatatacccaaagg-----aaaataaatcattctaccaaaaagacacgcacctgtatattcatggcagcgctattcacaatagcaaggccaggcacagtggctcacacctgtaattccagtgtttttagaggtcaaggcagaaggatcccttgaggccacgagttcaagaaca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121034353 353 - 195804263 cttttgttcaaaagtcaaaaaa-tgacagatgttggcagggctgtggagaaaagggaacacttatactcaatgtgaatatattggtggaatgtaaattagtttagccactgtggaaagcagtttagagatttctcaaag----aagagttgaatgaccattcaacccagcaatcccattaccaagtatatacacaaaggaaaataaaataaatcattctaccaaaaagacacgcacctgtatattcattgcagcgctattcacaatagcaaggccaggcacagtggctcacacctgtaattccagtgtttttagaggtcaaggcagaaggatcccttgaggccacgagttcaagaaca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4465621 352 - 17550833 cttttgttcaaaagtcaaaaaa-tgacagatgttggcagggctgtggagaaaagggaacacttatactcaatgtgaatatattggtggaatgtaaattagtttagccactgtggaaagcagtttagagatttctcaaagaactaagagttgaatgaccattcaacccagcaatcccattaccaagtatatacccaaagg-----aaaataaatcattctaccagaaagacacgcacctgtatattcattgcagcgctattcacaatagcaaggccaggcacagtggctcacacctgtaattccagtatttttagaggtcaaggcagaaggatcccttgaggccacgagttcaagaaca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69338510 352 - 118206036 cttttgttcaaaagtcaaaaaa-tgacagatgttggcagggctgtggagaaaagcgaatgcttatactcaatgtgaacatattggtggaatgtaaattagtttagccactgtggaaagcagtttagagatttctcaaagaaataagagttgaatgaccattcaacccagcaatcccattaccaagtacctacccaaagg-----aaaataaatcattctaccaaaaagacatgcacctgtatattcatcgcagcacttttcacaatagcTAggccaggcacagtggctcacacctgtaattccagtgtttttagaggtcaaggcagaaggatcccttgaggccacgagttcaagaaca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111542348 353 - 190429646 cttttgttcaaaagtcaaaaaactgacagatgttggtagggctgtggagaaaagggaacgcttacactcaacatgaatatattggtggaatgtaaattagtttagccactgtggaaagcagtttagagatttctcaaagaaccaagagtttaatgaccattcaacccagtaatcccattaccaagtatatacctaaagg-----aaaataaatcattctaccaaaaagatatgcacctgtatattcatttcagcgctattcacaatagTGAggccaggcacagtggttcacacttgtaattccagtgtttttagaggtcaaggcagaaagatcccttgaggccacgagtccaagaaca i rheMac8.chr5 C 0 I 6 s macFas5.chr5 110710486 353 - 189454096 cttttgttcaaaagtcaaaaaactgacagatgttggtagggctgtggagaaaagggaacgcttacactcaacatgaatatattggtggaatgtaaattagtttagccactgtggaaagcagtttagagatttctcaaagaaccaagagtttaatgaccattcaacccagtaatcccattaccaagtatatacctaaagg-----aaaataaatcattctaccaaaaagatatgcacctgtatattcatttcagcgctattcacaatagTGAggccaggcacagtggttcacacttgtaattccagtgtttttagaggtcaaggcagaaagatcccttgaggccacgagtccaagaaca i macFas5.chr5 C 0 I 6 s macNem1.NW_012012466v1 13278516 353 + 26754465 cttttgttcaaaagtcaaaaaactgacagatgttggtagggctgtgcagaaaagggaacgcttacactcaacatgaatatattggtggaatgtaaattagtttagccactgtggaaagcagtttagagatttctcaaaaaactaagagtttaatgaccattcaacccagtaatcccattaccaagtatatacctaaagg-----aaaataaatcattctaccaaaaagatatgcacgtgtatattcatttcagcactattcacagtagTGAggccaggcacagtggttcacacctgtaattccagtgtttttagaggtcaaggcagaaagatcccttgaggccacgagtccaagaaca i macNem1.NW_012012466v1 C 0 I 6 s cerAty1.NW_012001307v1 4179782 353 - 5137665 cttttgttcaaaagtcaaaaaactgacagatgttggtagggctgtggagaaaagggaacgcttacactcaacgtgaatatattggtggaatgtaaattagtttagccactgtggaaagcagtttagagatttctcaaagaactaagagtttaatgaccattcaacccagtaatcccattaccaagtatatacctaaagg-----aaaagaaatcattctaccaaaaagatatgcacctgtatattcatttcagcgctattcacagtagTGAggccaggcacagtggttcacacctgtaattccagtgtttttagaggtcaaggcagaaagattccttgaggccacgagtccaagaaca i cerAty1.NW_012001307v1 C 0 I 6 s chlSab2.chr7 122894635 353 - 135778131 cttttgttcaaaagtcaaaaaactgacagatgttggtagggctgtggagaaaagggaatgcttacactcaacgtgaatatattggtggaatgtaaattagtttagccactgtggaaagcagtttagagatttctcaaagaactaagagtttaatgaccattcaacccagtaatcccattaccaagtatatagctaaagg-----aaaataaataattctaccaaaaagatatgcacctgtatattcatttcagcgctattcacaacagTGAggccaggcacagtggttcacacctgtaattccagtgtttttagaggtcaaggcagaaagatcccttgaggccacgagtccaagaaca i chlSab2.chr7 C 0 I 6 s manLeu1.NW_012104388v1 1996463 353 + 2427316 cttttgttcaaaagtcaaaaaactgacagatgttggtagggctgtggagaaaagggaacgcttacactcaacgtgaatatattggtggaatgtaaattagtttagccactgtggaaagcagtttagagatttctcaaagaactaagagtttaatgaccattcaacccagcaatcccattaccaagtatatacctaaagg-----aaaataaatcattctaccaaaaagatatgcacctgtatattcatttcagcgctattcacagtagtgaggccaggcacagtggttcacacctgtaattccagtgtttttagaggtcaaggcagaaagatcccttgaggccatgagtccaagaaca i manLeu1.NW_012104388v1 C 0 I 3024 s colAng1.NW_012119221v1 1290052 353 + 1448899 CCTttgttcaaaagtcaaaaaactgacagatgttggtagggctgtggagaaaagggaacgcttacagtcaacgtgaatatattggtggaatgtaaattagtttagccactgtggaaagcagtttagagacttctcaaataactaagagttcaatgaccattcaacccagtaatcccattaccaagtatatacctaaagg-----aaaataaatcattctaccaaaaagatatgcacctgtatattcatttcagcgctattcacaatagcGAggccaggcacagtggttcatacctgtaattccagtgtttttagaggtcaaggcagaaagatcccttgaggccatgagtccaagaaca i colAng1.NW_012119221v1 C 0 I 6 e proCoq1.NW_012140747v1 1871728 18 + 4188776 I e micMur3.chrUn_NW_017968520v1 1783709 389 + 3286835 I e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8608092 3 + 8790067 I e canFam3.chr13 47998479 268 + 63241923 I a score=214025.000000 s hg38.chr4_KI270787v1_alt 56607 39 + 111943 gtctgggaaacatagtgaaaccctttctttacaaaaaat s panTro5.chr4 119621290 39 - 194502333 gtctgggaaatatagtgaaaccctttctttacaaaaaat i panTro5.chr4 C 0 C 0 s panPan2.chr4 121034706 39 - 195804263 gtctgggaaatatagtgaaaccctttctttacaaaaaat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4465973 39 - 17550833 gtctggcaaatatagtgaaaccctttctttacaaaaaat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69338862 39 - 118206036 gtctgggaaatatagtgaaaccctttctttacaaaaaat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111542707 39 - 190429646 atatgggaaatatagtgaaaccctgtctttacaagaaat i rheMac8.chr5 I 6 C 0 s macFas5.chr5 110710845 39 - 189454096 atatgggaaatatagtgaaaccctgtctttacaagaaat i macFas5.chr5 I 6 C 0 s macNem1.NW_012012466v1 13278875 39 + 26754465 atatgggaaatatagtgaaaccctgtctttacaagaaat i macNem1.NW_012012466v1 I 6 C 0 s cerAty1.NW_012001307v1 4180141 39 - 5137665 atatgggaaatatagtgaaaccctgtctttacaagaaat i cerAty1.NW_012001307v1 I 6 C 0 s chlSab2.chr7 122894994 39 - 135778131 atatgggaaatatagtgaaaccctgtctttacaagaaat i chlSab2.chr7 I 6 C 0 s manLeu1.NW_012104388v1 1999840 39 + 2427316 atatgggaaatatagtgaaaccctgtctttacaagaaat i manLeu1.NW_012104388v1 I 3024 C 0 s colAng1.NW_012119221v1 1290411 39 + 1448899 atatgggaaatatagtgaaaccctgtctttacaagaaat i colAng1.NW_012119221v1 I 6 I 319 e proCoq1.NW_012140747v1 1871728 18 + 4188776 I e micMur3.chrUn_NW_017968520v1 1783709 389 + 3286835 I e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8608092 3 + 8790067 I e canFam3.chr13 47998479 268 + 63241923 I a score=3676752.000000 s hg38.chr4_KI270787v1_alt 56646 635 + 111943 aacttaaataaaattaactgggcatggtggcatgtgcatgtagtcccagctacttaagaagccgaggcaggagtatggcttgcgcccaggagcttgagg-tgcagcaagctatgatcgcaccacagaactccagcctgggtaacagagcaagacccggtcagtcactctttttagatcatactctttttgaaaaacaaaaaaacaacaaatatagagacaatagcaaagacatggaatcaaccttaatgcccatcattggtggatttactaaaggaaatgtggcacatatacaccatggaaaattatgcagccataaaaaagaatgaaattttataatttgcagcaacatagatgcaactggaggccattatcctaaatgaactaacacagaaatggaaaaccaaataccatgtgttctcacatataagtgggagctaaacattgggtatatatgaacataaagataggaacaatagatactggggacaacaagagtggggagggaggaaggggggcaatggttgaaaaactacctattggatactctgctcaccacctaggtaacacattcaaccatactccaaacctcagcatcatgccatacacctttgcaacaaacctacacatataccctc s panTro5.chr4 119621329 635 - 194502333 aacttaaataaaattaactgggcatggtggcatgtgcatgtagtcccagctacttaagaagctgaggcaggagtattgcttgcgcccaggagcttgagg-tgcagcaagctatgatcgcaccactgaactccagcctgggtaacagagcaagacccggtcAGTCACTCTTTTTAGATCATACTCTTTTTGAAAAACAAAAAAACAACAAATATAGAGacaatagcaaagacatggaatcaaccttaatgcccatcattggtggatttactaaaggaaatgtggcacatatacaccatggaaaattatgcagccataaaaaagaatgaaattttataatttgcagcaacatagatgcaactggaggccattatcctaaatgaactaatacagaaatggaaaaccaaataccatgtgttctcacatataagtgggagctaaacattgggtatatatgaacataaagataggaacaatagatactggggacaacaagagtagggagggaggaaggggggcaatggttgaaaaactacctattggatactctgctcaccacctaggtaacacattcaatcatactccaaacctcagcatcatgccatacacctttgcaacaaacctacacatataccctc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121034745 635 - 195804263 aacttaaataaaattaactgggcatggtggcatgtgcatgtagtcccagctacttaagaagctgaggcaggagtattgcttgcgcccaggagcttgagg-tgcagcaagctatgatcgcaccactgaactccagcctgggtaacagagcaagacccggtcAGTCACTCTTTTTAGATCATACTCTTTTTGAAAAACAAAAAAACAACAAATATAGAGacaatagcaaagacatggaatcaaccttaatgcccatcattggtggatttactaaaggaaatgtggcacatatacaccatggaaaattatgcagccataaaaaagaatgaaattttataatttgcagcaacatagatgcaactggaggccattatcctaaatgaactaatacagaaatggaaaaccaaataccatgtgttctcacatataagtgggagctaaacattgggtatatatgaacataaagataggaacaatagatactggggacaacaagagtagggagggaggaaggggggcaatggttgaaaaactacctattggatactctgctcaccacctaggtaacacattcaatcatactccaaacctcagcatcatgccatacacctttgcaacaaacctacacatataccctc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4466012 635 - 17550833 aacttaaataaaattaactgggcatggtggcatgtgcatgtagtcccagctacttaagaagctgaggcaggagtattgcttgtgcccaggagcttgagg-tgcagcaagctatgatcgcaccactgaactccagcctgggtaacagagcaagaccGGGTCAGTCACTCTTTTTAGATCATACTCTTTTTGAAAAACAAAAAAACAACAAATATAGAGacaatagcaaagacatggaatcaaccttaatgcccatcattggtggatttactaaaggaaatgtggcacatatacaccatagaaaattatgcagccataaaaaagaatgaaattttgtaatttgcagcaacatagatgcaactggaggccattatcctaaatgaactaacacagaaatggaaaaccaaataccatgtgttctcacatataagtgggagctaaacattgggtatatatgaacataaagataggaacaatagatactggggacaacaagagtggggagggaggaaggggggcaacggttgaaaaactacctattggatactctgctcaccacctaggtaacacattcaatcatactccaaacctcagtatcatgccgtacacctttgcaacaaacctacacatataccctc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69338901 635 - 118206036 aacttaaataaaattaactgggcatggtggcatgtgcatgtagtcctagctacttaagaagctgaggcaggagtattgcttgtgcccaggagcttgaggttgcagcaagctatgattgcaccactgaactccagcctgggtaacagagcaagacccagtcAGTCACTCTTTTTAGATCATACTCTTTTTGAAAAACAAAAAAACAACAAATATAGAGacaataacaacgacatggaatcaaccttaatgcccatcattggtggatttaataaaggacatgtggcacatatacaccatggaaaattatgcagccataaaaaagaatgaaattttgtaatttgcaccaacatagatgcaactggaggccattatcctaaatgaactaacacagaaatggaaaaccaaataccatgtg-tctcacatataagtgggagctaaacattgtgtatatatgaacataaagataggaacaatagattctggggacaagaagagtggggagggaggaaggggggcaatggttgaaaaactacctattggatactctcctcactacctgggtaacacattcaatcatactccaaacctcagcatcatgccatacacctttgcaacaaacctgcacatataccctc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111542746 636 - 190429646 aacttaaataaaattaactgggcatggtgacatgtgcacgtagtcccaggtacttaggaagctgagatggaagtattgcttgcgcccaggagcttgaggttgcagcaaagtatggtcacaccactgaactccaggctgggcaactgagcaagatccagtcAATCACTCTTTTTAGATCATACTCTTTTTGAAAAATAAAGCAACAACAAATATAGAGacaatggcaaagacatggaatcaacctaagtgcccatcattggtggatttaataaaggaaatgtggcacatatataccatggaacatcatgcagccataaaaaagaatgaaattttgtaatttgcagcaacatagacacaactggaggccattatcctaaatgaacttatgcagaaatggaaaaccaaataccatgtgttctcacatataagtgggagctaaacattgggtatatatgaacataaagataggaacaatagatactggggacaacaagagtggggagggaggaagggaggcaatggttgaaaaactacctattggatactctgctcaccacctaggtaacacgttcaatcatactccaaacctcagcatcatgccatacacctttgcaacaaacctgcacatataccctc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110710884 636 - 189454096 aacttaaataaaattaactgggcatggtgacatgtgcacgtagtcccaggtacttaggaagctgagatggaagtattgcttgcgcccaggagcttgaggttgcagcaaagtatggtcacaccactgaactccaggctgggcaactgagcaagatccagtcAATCACTCTTTTTAGATCATACTCTTTTTGAAAAATAAAGCAACAACAAATATAGAGacaatggcaaagacatggaatcaacctaagtgcccatcattggtggatttaataaaggaaatgtggcacatatataccatggaacatcatgcagccataaaaaagaatgaaattttgtaatttgcagcaacatagacacaactggaggccattatcctaaatgaacttatgcagaaatggaaaaccaaataccatgtgttctcacatataagtgggagctaaacattgggtatatatgaacataaagataggaacaatagatactggggacaacaagagtggggagggaggaagggaggcaatggttgaaaaactacctattggatactctgctcaccacctaggtaacacgttcaatcatactccaaacctcagcatcatgccatacacctttgcaacaaacctgcacatataccctc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13278914 636 + 26754465 aacttaaataaaattaactgggcatggtcacatgtgcacgtagtcccaggtatttaggaagctgagatggaagtattgcttgcgcccaggagcttgaggttgcagcaaagtatggtcgcaccactgaactccaggctgggcaactgagcaagatccagtcAATCACTCTTTTTAGATCATACTCTTTTTGAAAAATAAAGCAACAACAAATATAGAGacaatggcaaagacatggaatcaacctaagtgcccatcattggtggatttaataaaggaaatgtggcacatatataccatggaacatcatgcagccataaaaaagaatgaaattttgtaatttgcagcaacatagacacaactggaggccattatcctaaatgaacttatgcagaaatggaaaaccaaataccatgtgttctcacatataagtgggagctaaacattgggtatatatgaacataaagacaggaacaatagacactgcggacaacaagagtggggagggaggaaggggggcaatggttgaaaaactacctattggatactctgctcaccacctaggtaacacattcaatcatactccaaacctcagcatcatgccatacacctttgcaacaaacctgcacatataccctc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4180180 636 - 5137665 aacttaaataaaattaactgggcatggtcacatgtgcacgtagtcccaggtacttaggaagctgagatggaagtattgcttgcgcccaggagcttgaggttgcagcaaagtatggtcgcaccactgaactccaggctgggcaactgagcaagatccagtcAATCACTTTTTTTAGATCATACTCTTTTTGAAAAATAAAGCAACAACAAATATAGAGacaatagcaaagacatggaatcaacctaagtgcccatcattggtggatttaataaaggaaatgtggcacatatataccatggaacatcatgcagccataaaaaagaatgaaattttgtaatttgcagcaacatagacacaactggaggccattatcctaaatgaacttatgcagaaacggaaaaccaaataccatgtgttctcacatataagtgggagctaaacattgagtatatatgaacataaagataggaacaatagatactggggacaacaagagtggggagggaggaaggggggcaatggttgaaaaactacctattggatactctgctcaccacctaggtaacacgttcaatcatactccaaacctcagcatcatgccatacacttttgcaacaaacctgcacatataccctc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122895033 636 - 135778131 aacttaaataaaattaactgggtatggtcacatgtgcacgtagtcccaggtacttaggaagctgagatggaagtattgctcgcgcccaggagcttgaggttgcagcaaagtatggtcgcaccactgaactccaggctgggcaactgagcaagaTGCAGTCAATCACTCTTTTTAGATCATACTCTTTTTGAAAAACAAAGCAACAACAAATATAGAGacaatagcaaagacatggaatcaacctaagtgcccatcattggtggatttaataaaggaaatgtggcacatatataccatggaacatcatgcagccataaaaaagaatgaaattttgtaatttgcagcaacatagacacaactggaggccattatcctaaatgaacttatgcagaaatggaaaaccaaataccatgtgttctcacatataagtgggagctaaacattgggtatatatgaacataaagataggaacaatagatactggggacaacaagagtggggagggaggaaggggggcaatggttgaaaaactacctattggatactctgctcaccacctaggtaacacgttcaatcatactccaaacctcagcatcatgccatacacctttgcaacaaacctgcacatataccctc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 1999879 636 + 2427316 aacttaaataaaattaactgggcatggtcacatgtgcacgtagtcccaggtacttaggaagctgagatggaagtattgcttgcgcccaggagcttgaggttgcagcaaagtatggtcgcacCACTGAACTCCAGGCTGGGCAACTGAGCAAGATCCAGTCAATCACTTTTTTTAGATCATACTCTTTTTGAAAAATAAAGCAACAACAAATATAGAGacaatagcaaagacatggaatcaacctaagtgcccatcattggtggatttaataaaggaaatgtggcacatatataccatggaacatcatgcagccataaaaaagaatgaaattttgtaatttgcagcaacatagacacaactggaggccattatcctaaatgaacttatgcagaaacggaaaaccaaataccatgtattctcacatataagtgggagctaaacattgggtatatatgaacataaagataggaacaatagatactggggacaacaagagtggggagggaggaaggggggcaatggttgaaaaactacctattggatactctgctcaccacctaggtaacacgttcaatcatactccaaacctcagcatcatgccatacacctttgcaacaaacctgcacatataccctc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1290769 636 + 1448899 aacttaaataaaattaactgggcatggtggcatgtgcacgtagtcccaggtacttaagaagctgaaatggaagtattgcttgcgcccaggagcttgaggttgcagcaaggtatggtcacaccactgaactccaggctgggcaactgagcaagacccAATCAATCACTCTTTTTAGATCATACTCTTTTTGAAAAACAAAACAACAACAAATATAGAGacaatagcaaagacatggaatcaacctaagtgcccatcatcggtggatttaataaaggaaatgtggcacatatataccatggaacatcatgcagccataaaaaagaatgaaattttgtaatttgcagcaacatagacacaactggaggccattatcctaaatgaacttatgcagaaatggaaaaccaaataccatgtgttctcacatgtaagtgggagctaaacattgggtatacatgaacataaagataggaacaatagatactggggacaacaagagtagggagggaggaaggggggcaatggtagaaaaactacttattggatactctgctcaccacctaggtaacacgttcagtcatactccaaacctcagcatcatgctatacacctttgcaacaaacctgtacatataccctc i colAng1.NW_012119221v1 I 319 C 0 e proCoq1.NW_012140747v1 1871728 18 + 4188776 I e micMur3.chrUn_NW_017968520v1 1783709 389 + 3286835 I e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8608092 3 + 8790067 I e canFam3.chr13 47998479 268 + 63241923 I a score=403232.000000 s hg38.chr4_KI270787v1_alt 57281 62 + 111943 tgaatctaaaataaaagctggaaaaaaaTCACAGCCTTTCTGAACATGTGCAGGTGGCAAAG s panTro5.chr4 119621964 61 - 194502333 tgaatctaaaataaaagctggaaaaaaaTCACAGCCTTTCTGAAC-TGTGCAGGTGGCAAAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121035380 61 - 195804263 tgaatctaaaataaaagctggaaaaaaaTCACAGCCTTTCTGAAC-TGTGCAGGTGGCAAAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4466647 62 - 17550833 tgaatctaaaataaaagctggaaaaaaaTCACAGCCTTTCTGAACATGTGCAGGTGGCAAAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69339536 62 - 118206036 tgaatctaaaataaaagctggaaaaaaaTCACAGCCTTTCTGAACATGTGCAGGTGGCAAAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111543382 62 - 190429646 tgaatctaaaataaaagctggaaaaaaaTCACAGCCTTTCTGAACATGTGCAGGTGGCAAAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110711520 62 - 189454096 tgaatctaaaataaaagctggaaaaaaaTCACAGCCTTTCTGAACATGTGCAGGTGGCAAAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13279550 62 + 26754465 tgaatctaaaataaaagctggaaaaaaaTCACAGCCTTTCTGAACATGTGCAGGTGGCAAAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4180816 62 - 5137665 tgaatctaaaataaaagctggaaaaaaaTCACAGCCTTTCTGAACATGTGCAGGTGGCAAAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122895669 62 - 135778131 tgaatctaaaataaaagctggaaaaaaaTCACCGCCTTTCTGAACATGTGCAGGTGGCAAAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2000515 62 + 2427316 tgaatctaaaataaaagctggaaaaaaaTCACAGCCTTTCTGAACATGTGCAGGTGGCAAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1291405 62 + 1448899 tgaatctaaaataaaagctggaaaaaaaTCACAGCCTTTCTGAGCATGTGCAGGTGGCAAAG i colAng1.NW_012119221v1 C 0 C 0 s canFam3.chr13 47998747 62 + 63241923 tgaataaataaataaaatttttaaaaaaTCACCACCTTTCTGCACATGCATAGGTAGCAAAG i canFam3.chr13 I 268 C 0 e proCoq1.NW_012140747v1 1871728 18 + 4188776 I e micMur3.chrUn_NW_017968520v1 1783709 389 + 3286835 I e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8608092 3 + 8790067 I a score=65425.000000 s hg38.chr4_KI270787v1_alt 57343 10 + 111943 AGATACTATG s panTro5.chr4 119622025 10 - 194502333 AGACACTATG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121035441 10 - 195804263 AGATACTATG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4466709 10 - 17550833 AGATACTATG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69339598 10 - 118206036 AGATACTATG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111543444 10 - 190429646 AGATCCTATG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110711582 10 - 189454096 AGATCCTATG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13279612 10 + 26754465 AGATCCTATG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4180878 10 - 5137665 AGATCCTATG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122895731 10 - 135778131 AGATCCTATG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2000577 10 + 2427316 AGATCCTATG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1291467 10 + 1448899 AGATACTATG i colAng1.NW_012119221v1 C 0 C 0 s proCoq1.NW_012140747v1 1871746 10 + 4188776 AGATAATATG i proCoq1.NW_012140747v1 I 18 C 0 s canFam3.chr13 47998809 8 + 63241923 --ATGCTGTG i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1783709 389 + 3286835 I e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8608092 3 + 8790067 I a score=45906.000000 s hg38.chr4_KI270787v1_alt 57353 5 + 111943 CACAG s panTro5.chr4 119622035 5 - 194502333 CACAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121035451 5 - 195804263 CACAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4466719 5 - 17550833 CACAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69339608 5 - 118206036 CACAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111543454 5 - 190429646 CACAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110711592 5 - 189454096 CACAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13279622 5 + 26754465 CACAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4180888 5 - 5137665 CACAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122895741 5 - 135778131 CACAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2000587 5 + 2427316 CACAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1291477 5 + 1448899 CACAG i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1784098 5 + 3286835 CACAG i micMur3.chrUn_NW_017968520v1 I 389 C 0 s proCoq1.NW_012140747v1 1871756 5 + 4188776 CACGG i proCoq1.NW_012140747v1 C 0 C 0 s canFam3.chr13 47998817 5 + 63241923 CACAG i canFam3.chr13 C 0 C 0 e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C e otoGar3.GL873602 8608092 3 + 8790067 I a score=309894.000000 s hg38.chr4_KI270787v1_alt 57358 33 + 111943 TGCAGCTGAACAGCTCTTTT-CTGAAGCATCAGG s panTro5.chr4 119622040 33 - 194502333 TGCAGCTGAACAGCTCTTTT-CTGAAGCATCAGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121035456 33 - 195804263 TGCAGCTGAACAGCTCTTTT-CTGAAGCATCAGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4466724 33 - 17550833 TGCAGCTGAACAGCTCTTTT-CTGAAGCATCAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69339613 33 - 118206036 TGCAGCTGAACAGCTCTTTT-CTGAAGCATCAGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111543459 33 - 190429646 TGCAGCTGAACAGCTCTTTT-CTGAAGCATCAGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110711597 33 - 189454096 TGCAGCTGAACAGCTCTTTT-CTGAAGCATCAGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13279627 33 + 26754465 TGCAGCTGAACAGCTCTTTT-CTGAAGCATCAGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4180893 33 - 5137665 TGCAGCTGAACAGCTCTTTT-CTGAAGCATCAGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122895746 33 - 135778131 TGCAGCTGAACAGCTCTTTT-CTGAAGCATCAGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2000592 33 + 2427316 TGCAGCTGAACAGCCCTTTT-CTGAAGCATCAGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1291482 33 + 1448899 TGCAGCTGAACAGCTCTTTT-CTGAAGCATCAGG i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1784103 33 + 3286835 TGCAGCTGGATAGCTCTTTT-TTAAAGCATCAGG i micMur3.chrUn_NW_017968520v1 C 0 I 119 s proCoq1.NW_012140747v1 1871761 33 + 4188776 TGCAGCTGGACAGCTCTTTT-CTAAAGCGTCAGG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8608095 33 + 8790067 TGCAACTAGGTGGTTCTTCT-CCAATGATTGAGA i otoGar3.GL873602 I 3 C 0 s canFam3.chr13 47998822 34 + 63241923 TGCAGCTGGGCAACACTTTTCCTAAATCATCAAG i canFam3.chr13 C 0 C 0 e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=70822.000000 s hg38.chr4_KI270787v1_alt 57391 9 + 111943 CCCGGTGAT s panTro5.chr4 119622073 9 - 194502333 CCCGGTGAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121035489 9 - 195804263 CCCGGTGAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4466757 9 - 17550833 CCCGGTGAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69339646 9 - 118206036 CCCGGTGAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111543492 9 - 190429646 CCCGGTGAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110711630 9 - 189454096 CCTGGTGAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13279660 9 + 26754465 CCTGGTGAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4180926 9 - 5137665 CCCGGTGAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122895779 9 - 135778131 CCCGGTGAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2000625 9 + 2427316 CCCGGTGAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1291515 9 + 1448899 CCCAGTGAT i colAng1.NW_012119221v1 C 0 C 0 s proCoq1.NW_012140747v1 1871794 9 + 4188776 CCCAGTGAT i proCoq1.NW_012140747v1 C 0 I 125 s otoGar3.GL873602 8608128 6 + 8790067 ---AGAGGC i otoGar3.GL873602 C 0 I 2 s canFam3.chr13 47998856 9 + 63241923 CCCAGTGAT i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1784136 119 + 3286835 I e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=628990.000000 s hg38.chr4_KI270787v1_alt 57400 97 + 111943 ------------TTGGAGGCAGGGTAA-CATTTGGGG--GTTGGGGAATGGCTAACCCAGCAGCAGGAAGGGGGATTTTGTTAGGTCAAGGGGAGTG----GTGGACATACCCAGT-------- s panTro5.chr4 119622082 97 - 194502333 ------------TTGGAGGCAGGGTAA-CATTTGGGG--GTTGGGGAGTGGCTAACCCAGCAGCAGGAAGGGGGATTTTGTTAGGTCAAGGGGAGTG----GTGGACATACCCAGT-------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121035498 97 - 195804263 ------------TTGGAGGCAGGGTAA-CATTTGGGG--GTTGGGGAGTGGCTAACCCAGCAGCAGGAAGGGGGATTTTGTTAGGTCAAGGGGAGTG----GTGGACATACCCAGT-------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4466766 97 - 17550833 ------------TTGGAGGCAGGGTAA-CATTTGGGG--GTTGGGGAGTGGCTAACCCAGCAGCAGGAAGGGGGATTTTGTTAGGTCAAGGTCAGTG----GTGGACATACCCAGT-------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69339655 97 - 118206036 ------------TTGGAGGCAGGGTAA-TATTTGGGG--GTTGGGGAGTGGCTAACCCAGCAGCAGGAAGGGGGATTTTGTTAGGTCAAGGGGAGTG----GTGGATATACCCAGT-------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111543501 97 - 190429646 ------------TTGGAGGCAGGGCAA-CATTTGGGG--GTTGGGGAGTGGCTAACCCTGCAGCAGGAATGGGGATTTTGTTAGGTCAAGGGGAGTG----GTGGACATACCCAGT-------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110711639 97 - 189454096 ------------TTGGAGGCAGGGCAA-CATTTGGGG--GTTGGGGAGTGGCTAACCCTGCAGCAGGAATGGGGATTTTGTTAGGTCAAGGGGAGTG----GTGGACATACCCAGT-------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13279669 97 + 26754465 ------------TTGGAGGCAGGGCAA-CATTTGGGG--GTTGGGGAGTGGCTAACCCTGCAGCAGGAATGGGGATTTTGTTAGGTCAAGGGGAGTG----GTGGACATACCCAGT-------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4180935 97 - 5137665 ------------TTGGAGGCAGGGCAA-CATTTGGGG--TTTGGGGAGTGGCTAACCCTGCAGCAGGAATGGGGATTTTGTTAGGTCAAGGGGAGTG----GTGGACATACCCAGT-------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122895788 97 - 135778131 ------------TTGGAGGCAGGGCAA-CATTTGGGG--GTTGGGGAGTGGCTAACGCTGCAGCAGGAATGGGGATTTTGTTAGGTCAAGGGGAGTG----GTGGACATACCCAGT-------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2000634 97 + 2427316 ------------TTGGAGGCAGGGCAA-CATTTGGGG--GTTGGGGAGTGGCTAACCCTGCAGCAGGAATGGGGATTTTGTTAGGTCAAGGGGAGTG----GTGGACATACCCAGT-------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1291524 97 + 1448899 ------------TTGGAGGCAGGGCAA-CATTTGGGG--GTTGGGGAGTGGCTAACCCTGCAGCAGGAATGGGGATTTTGTTAGGTCAAGGGGAGTG----GTGGACATACCCAGT-------- i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8608136 98 + 8790067 -------------TTAGGGTAGGCCAATTATTTGGGGGAGTTTAGGAGTGGCTAACCCAGCAGCTAGAACAGGGATGTCACTAGGGCAAGGAGAGGGACCAGGTGACATGT------------- i otoGar3.GL873602 I 2 C 0 s canFam3.chr13 47998865 107 + 63241923 TTAAATGAGGCCTTCACAATAGGGCAGTTGTTTAGGA------------GGTTAACCCCAAAGCAGGAATGGGGATCTCACTGGG-CTATGGGAGTG----GAGGATGTACCCAGAGAGCAGGC i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1871803 125 + 4188776 I e micMur3.chrUn_NW_017968520v1 1784136 119 + 3286835 I e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=89915.000000 s hg38.chr4_KI270787v1_alt 57497 13 + 111943 TGTCAGGGAT---AGC s panTro5.chr4 119622179 13 - 194502333 TGTCAGGGAT---AGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121035595 13 - 195804263 TGTCAGGGAC---AGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4466863 13 - 17550833 TGTCAGGGAT---AGC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69339752 16 - 118206036 TGTCAGGGATAGCAGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111543598 16 - 190429646 TGTCAGGGATAGCAAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110711736 16 - 189454096 TGTCAGGGATAGCAAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13279766 16 + 26754465 TGTCAGGGATAGCAAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4181032 16 - 5137665 TGTCAGGGATAGCAAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122895885 16 - 135778131 TGTCAGGGATAGCAAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2000731 16 + 2427316 TGTCAGGGATAGCAAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1291621 16 + 1448899 TGTCAGGGATAGCAAC i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1784255 13 + 3286835 tgtcagggatagc--- i micMur3.chrUn_NW_017968520v1 I 119 I 3 s otoGar3.GL873602 8608234 13 + 8790067 TGTCAGGGGCAAC--- i otoGar3.GL873602 C 0 I 3 s canFam3.chr13 47998972 16 + 63241923 TGTTAGGGATAACAGC i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1871803 125 + 4188776 I e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=851357.000000 s hg38.chr4_KI270787v1_alt 57510 101 + 111943 CATTCAAGAAGGTGGGCAGGCAACTAGCCCCAAAGAGGTACAA-AAAAACACATCAGGTGGTTATCCCAGCAGT-----GCATGGGCCGACAGGGAACTGAAAGTAA s panTro5.chr4 119622192 101 - 194502333 CATTCAGGAAGGTGGGCAGGCAACTAGCCCCAAAGAGGTACAA-AAAAACACATCAGGTGGTTATCCCAGCAGT-----GCATGGGCCAACAGGGAACTGAAAGTAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121035608 101 - 195804263 CATTCAAGAAGGTGGGCAGGCAACCAGCCCCAAAGAGGTACAA-AAAAACACATCAGGTGGTTATCCCAGCAGT-----GCATGGGCCAACAGGGAACTGAAAGTAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4466876 101 - 17550833 CATTCAAGAAGGTGGGCAGGCAACTAGCCCCAAAGAGGTACAA-AAAAACACATCAGATGGTTATCCCAGCAGT-----GCATGGGCCAACAGGGAACTGAAAGTAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69339768 101 - 118206036 CATTCAAGAAGGTGGGCAGGCAACTAGCCCCAAAGAGGTACAA-AAAAACACATCAGGTGTTTATCCCAGCAGT-----GCATGGGCCAACAGGGAACTGAGAGTAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111543614 101 - 190429646 CATTCAAGAAGGTGGGCAGGCAACTGGCCCCAAAGAGGTACAA-AAAAACACATCAGGCGGTTGTCCCAGCAGT-----GCATGGGCCAACAGGGAACTGAAAGTAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110711752 101 - 189454096 CATTCAAGAAGGTGGGCAGGCAACTGGCCCCAAAGAGGTACAA-AAAAACACATCAGGCGGTTGTCCCAGCAGT-----GCATGGGCCAACAGGGAACTGAAAGTAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13279782 101 + 26754465 CATTCAAGAAGGTGGGCAGGCAACTGGCCCCAAAGAGGTACAA-AAAAACACATCAGGCGGTTGTCCCAGCAGT-----GCATGGGCCAACAGGGAACTGAAAGTAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4181048 101 - 5137665 CATTCAAGAAGGTGGTCAGGCAACTGGCCCCAAAGAGGTACAA-AAAAACACATCAGGCAGTTGTCCCAGCAGT-----GCATAGGCCAACAGGGAACTGAAAGTAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122895901 101 - 135778131 CATTCAAGAAGGTGGGCAGGCAACTGGCCCCAAAGAGGTACAA-AAAAACACATCAGGCGGTTGTCCCAGCAGT-----GCATGGGCCAACAGGAAACTGAAAGTAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2000747 101 + 2427316 CATTCAAGAAGGTGGGCAGGCAACTGGCCCCAAAGAGGTACAA-AAAAACACATCAGGCGGTTGTCCCAGCAGT-----GCATGGGCCAACAGGGAACTGAAAGTAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1291637 101 + 1448899 CATTCGGGAAGGTGGACAGGCAACTGGCTCCAAAGAGGTACAA-AAAAACACATCAGGCGATTGTCCCAGCAGT-----GCATGGGCCAACAGGGAGCTGAAAGTAA i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1784271 107 + 3286835 cattcaggaagggaggcaggcaACTGGCCATAGAGAAGTACAAGAAAACCACATCAAGTGGTTGTTCCAGCAGCACAGAGCACGGGATGACAAGGAATTGAAAGTAG i micMur3.chrUn_NW_017968520v1 I 3 C 0 s proCoq1.NW_012140747v1 1871928 107 + 4188776 cattcaggaagggaggcaggcaACTGGCCACAGAGAGGTACAGGAAAACCACATCAGGTAGTTGTCCCAGCAGCACAGAGCATGGGACAGCAAGGAACCGAAAGTAG i proCoq1.NW_012140747v1 I 125 C 0 s otoGar3.GL873602 8608250 101 + 8790067 CATTAAAGAAGGGAGGCAGGCAAAT-GCCATAG----GCACAATAAAAACAAATCAGGTGGTTATCCTGGAAGCACAGGGCATGGGACAACAAGGAACC-AAAGTAG i otoGar3.GL873602 I 3 C 0 s canFam3.chr13 47998988 93 + 63241923 CATTCTAGAAAGCAGGCAAGCTACAG-------------ACAG-CAAACTACATCTAGTGATTGTTCCAGCAGCATAAAGCTCGAGGCAATGAGGAACTGGAAGTAG i canFam3.chr13 C 0 C 0 e mm10.chr5 76410858 1775 + 151834684 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=795531.000000 s hg38.chr4_KI270787v1_alt 57611 90 + 111943 CAAGATGGTAGAGATCCAGCCAGTGGTCAGCATCAGGAAGATTTGGAAGCAGATTACCAAGGTAGGCGTAAAGTTGAGGGGAACGCAGCA s panTro5.chr4 119622293 90 - 194502333 CAAGATGGTAGAGATCCAGCCAGTGGTCAGCATCAGGAAGATTTGGAAGCAGATTACCAAGGTAGGCGTAAAGTTGAGGGGAACGCAGCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121035709 90 - 195804263 CAAGATGGTAGAGATCCAGCCAGTGGTCAGCATCAGGAAGATTTGGAAGCAGATTGCCAAGGTAGGCGTAAAGTTGAGGGGAACGCAGCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4466977 90 - 17550833 CAAGATGGTAGAGATCCAACCAGTGGTCAGCATCAGGAAGATTTGGAAGCAGATTACCAAGGTAGGCGTAAGGTTGAGGGGAACGCAGCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69339869 89 - 118206036 CAAGATGGCAGAGATCCAGCCAGTGGTCAGCATCAGGAAGATTTGGAGGCAGATTACCAAGG-AGGCGTAAGGTTGAGGGGAACGCAGCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111543715 89 - 190429646 CAAGATGGT-GAGATCCAGCCAGTGGTCAGCATCAGGAAGATTTGGAAGCAGATTACCAAGGTATGCGTAAGGTTCAGGGGAACGCAGCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110711853 89 - 189454096 CAAGATGGT-GAGATCCAGCCAGTGGTCAGCATCAGGAAGATTTGGAAGCAGATTACCAAGGTATGCGTAAGGTTCAGGGGAACGCAGCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13279883 89 + 26754465 CAAGATGGT-GAGATCCAGCCAGTGGTCAGCATCAGGAAGATTTGGAAGCAGATTACCAAGGTATGCGTAAGGTTCAGGGGAACGCAGCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4181149 89 - 5137665 CAAGATGGT-GAGATCCAGCCAGTGGTCAGCATCAGGAAGATTTGGAAGCAGATTACCAAGGTATGCGTAAGGTTCAGGGGAACGCAGCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122896002 89 - 135778131 CAAGATGGT-GAGATCCAGCCAGTGGTCAGCATCAGGAAGATTTGGAAGTAGATTACCAAGGTATGCGTAAGGTTCAGGGGAACGCAGCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2000848 89 + 2427316 CAAGTTGGT-GAGATCCAGCCAGTGGTCAGCATCAGGAAGATTTGGAAGCAGATTACCAAGGTATGCGTAAGGTTCAGGGGAACGCAGCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1291738 90 + 1448899 CAAGATGGTAGAGATCCAGCTAGTGGTCAGCATCAGGAAGATTTGGAAGCAGATTACCAAGGTAGGCATAAGGTTCAGGGGAACGCAGCA i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1784378 90 + 3286835 CAAGATGGTAGAGATGCAGGCAGTAGTCAGCGTCAGGAAGATTTGGAAGCAGATGACCAAGCTAGGAGTTAGGTTCAGGGGAGCACAGca i micMur3.chrUn_NW_017968520v1 C 0 I 41 s proCoq1.NW_012140747v1 1872035 90 + 4188776 CAAGATGGTAGAGATGCAGGCAGTAGTCAGCGTCAGGAAGATTCGGAAGCAGATGACCAAGCTACAAGTAAGGTTCAGGGGAGCACAGCA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8608351 88 + 8790067 GAAGACAGTAGAGATCCAGGCAGCAGTCAGCACCA-GAAGATATGGGAGCAGATTACCAAAGTAGGTGGAAGGTTTAGGGG-GCACAGCA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76412633 75 + 151834684 CAATACAGTAGAGATAAAGGT-GTGGTC----CCTGGGAAGTAACAGAGCAGCTTG-TGAGGCAGGGGTGGCACTTGGGGG--------- i mm10.chr5 I 1775 C 0 s canFam3.chr13 47999081 88 + 63241923 CAAGATAGTGAAGATCCAGGCAGTGGTCA-CATCAGGAAAATTTGGAAACCAATTACCAAGGCAAG-ACAAGGCTTAGGGGAGCATAGAA i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=232022.000000 s hg38.chr4_KI270787v1_alt 57701 28 + 111943 GCATCCCTGTTACTGGCACTGGGGTACA s panTro5.chr4 119622383 28 - 194502333 GCATCCCTGTTACTGGCACTGGGGTACA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121035799 28 - 195804263 GCATCCCTGTTACTGGCACTGGGGTACA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4467067 28 - 17550833 GCATCCCTGTTACTGGCACTGGGGTACA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69339958 28 - 118206036 GCATCCCTGTTACTGGCACTGGGGTACA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111543804 28 - 190429646 GCATCCCTGTTACCGGCACTGGGGTACA i rheMac8.chr5 C 0 I 1 s macFas5.chr5 110711942 28 - 189454096 GCATCCCTGTTACCGGCACTGGGGTACA i macFas5.chr5 C 0 I 1 s macNem1.NW_012012466v1 13279972 28 + 26754465 GCATCCCTGTTACCGGCACTGGGGTACA i macNem1.NW_012012466v1 C 0 I 1 s cerAty1.NW_012001307v1 4181238 28 - 5137665 GCATCTCTGTTACCGGCACTGGGGTACA i cerAty1.NW_012001307v1 C 0 I 1 s chlSab2.chr7 122896091 28 - 135778131 GCATCCCTGTTACCGGCACTGGGGTACA i chlSab2.chr7 C 0 I 1 s manLeu1.NW_012104388v1 2000937 28 + 2427316 GCATCCCTGTTACCAGCACTGGGGTACA i manLeu1.NW_012104388v1 C 0 I 1 s colAng1.NW_012119221v1 1291828 28 + 1448899 GCATCCCTGTTACCGGCACTGGGGTACA i colAng1.NW_012119221v1 C 0 I 1 s proCoq1.NW_012140747v1 1872125 28 + 4188776 GTGTCCCTGTTACGGTCACTGGAGTACA i proCoq1.NW_012140747v1 C 0 I 1 s otoGar3.GL873602 8608439 27 + 8790067 GTA-CCCTGTTATGGGCAGTGGAATACA i otoGar3.GL873602 C 0 I 298 s mm10.chr5 76412708 24 + 151834684 ---CCACTGTCCCTGGCACTGAAG-ACA i mm10.chr5 C 0 C 0 s canFam3.chr13 47999169 26 + 63241923 GTGCCCCTGTTACTGGCACTGAAAAA-- i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1784468 41 + 3286835 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=1549975.000000 s hg38.chr4_KI270787v1_alt 57729 183 + 111943 ATTTTGAGTTAGAGCACAGGAATAAGGTAAGGAAGGGAAAGGAAAAGGTACTGAAATTGATAGGCAGCCTACTAACctaggtgctttaagcatatgatcttatttaattcccacaacaaccatgcaaagtaggaattagccttattatataggagagaaaagtgaagttcaaagagaa-atgaa s panTro5.chr4 119622411 183 - 194502333 ATTTTGAGTTAGAGCACAGGAATAAGGTAAGGAAGGGAAAGGAAAAGGTACTGAAATTGATAGGCAGCCTACTAACctaggtgctttaagcatatgatcttatttaattcccacagcaaccatgcaaagtaggaattagccttattatataggagagaaaagtgaagttcaaagagaa-atgaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121035827 183 - 195804263 ATTTTGAGTTAGAGCACAGGAATAAGGTAAGGAAGGGAAAGGAAAAGGTACTGAAATTGATAGGCAGCCTACTAACctaggtgctttaagcatatgatcttatttaattcccacaacaaccatgcaaagtaggaattagccttattatataggagagaaaagtgaagttcaaagagaa-atgaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4467095 183 - 17550833 ATTTTGAGTTAGAGCACAGGAATAAGGTAAGGAAGGGAAAGGAAAAGGTACTGAAATTGATAGGCAGCCTACTAACctaggtgctttaagcatgtgatcttatttaattcccacaacaaccatgcaaagtaggaattagccttattatataggagagaaaagtgaagttcaaagagaa-atgaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69339986 184 - 118206036 ATTTTGAGTTGGAACATAGGAATAAGGTAAGGAAGGGAAAGGAAAAGGTACTGAAATTGATAGGCAGCCTACTAACctaggtgctttaagcatgtgatcttatttaattcccacaacaaccatgcaaagtaggaattagccttactatataggacagaaaagtgaagttcaaagagaatatgaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111543833 184 - 190429646 ACTTTGAGTTGGAGCACAGGAATAAGGTAAGAAAAGGAAAGGAAAAGGGACTGAAATTGATAGGCCGCCTACTAACctacgtgctttaagcatgtgatcttatttaattcccacaacaaccatgcaaagtaggaattagccttattatataggagagaaaagtgaagttcaaagagaatatgaa i rheMac8.chr5 I 1 C 0 s macFas5.chr5 110711971 184 - 189454096 ACTTTGAGTTGGAGCACAGGAATAAGGTAAGAAAGGGAAAGGAAAAGGGACTGAAATTGATAGGCCGCCTACTAACctacgtgctttaagcatgtgatcttatttaattcccacaacaaccatgcaaagtaggaattagccttattatataggagagaaaagtgaagttcaaagagaatatgaa i macFas5.chr5 I 1 C 0 s macNem1.NW_012012466v1 13280001 184 + 26754465 ACTTTGAGTTGGAGCACAGGAATAAGGTAAGAAAGGGAAAGGAAAAGGGACTGAAATTGATAGGCCGCCTACTAACctacgtgctttaagcatgtgatcttatttaattcccacaacaaccatgcaaagtaggaattagccttattatataggagagaaaagtgaagttcaaagagaatatgaa i macNem1.NW_012012466v1 I 1 C 0 s cerAty1.NW_012001307v1 4181267 184 - 5137665 ACTTTGAGTTGAAGCACAGGAATAAGGTAAGAAAGGGAAAGGAAAAGGGACTGAAATTGATAGGCCGCCTACTAACctacgtgctttaagcatgtgatcttatttaattcccacaacaaccatgcaaagtaggaattagccttattatataggagagaaaagtgaagttcaaaaagaatatgaa i cerAty1.NW_012001307v1 I 1 C 0 s chlSab2.chr7 122896120 184 - 135778131 ACTTTGAGTTGGAGCACAGGAATAAGGTAAGAAAGGGGAAGGAAAAGGGACTGAAATTGATAGGCCGCCTACTAACctaggtgctttaagcatgtgatcttatttaattcccacaacaaccatgcaaagtaggaattagccttattatataggagagaaaagtgaagttcaaagagaatatgag i chlSab2.chr7 I 1 C 0 s manLeu1.NW_012104388v1 2000966 184 + 2427316 ACTTTGAGTTGGAGCACAGGAATAAGGTAAGAAAGGGAAAGGAAAAGGGACTGAAATTGATAGGCCGCCTACTAACctacgtgctttaagcatgtgatcttatttaattcccacaacaaccatgcaaagtaggaattagccttattatataggagagaaaagtgaagttcaaagagaatatgaa i manLeu1.NW_012104388v1 I 1 C 0 s colAng1.NW_012119221v1 1291857 184 + 1448899 ACTTTAAGTTGGAGCACAGGAATAAGGTAAGAAAGGGAAAGGAAAAGGGACTGAAATTGATAGGTCGCCTACTAACctaggtgctttaagcatgtgctcttatttaattcccacaacaaccaggcaaagtaggaattagccttattatataggagagaaaagtgaagttcaaagagaatatgaa i colAng1.NW_012119221v1 I 1 C 0 s proCoq1.NW_012140747v1 1872154 183 + 4188776 ATTTTGAGGTGGAACACTGGAATAAGGTAAGGAAGGGGAAGGAAAAGGCACTGAAATTGATGGAcaggctactaacctaggtg-tttaagcatgtgagctcatttaatccccacaataatcatgcaaaggaagaattatccccattatatggaagagaaaaccgaggttcaaagaggctaccta i proCoq1.NW_012140747v1 I 1 I 1 s otoGar3.GL873602 8608764 181 + 8790067 aaTTTGAGTTGGAGCACTGGCATAAGGTAAGGAAGAGGAAGGAAAAGGTGCTGAAATTGATGGGCAGCCTGCTAACCTA-GTG-TTCAAGAATGCGatctcatttaatctccacaacagccatgaaaagtgagaattatccccatc-tataggtgagaaaactgaggttccaagaatctatcta i otoGar3.GL873602 I 298 I 1 s mm10.chr5 76412732 170 + 151834684 ------AGGTGAAGCAAAGGAATAAGG-----AAGAAGAGCAGAAGGGCCCTG--ACTGATGGGCACTCTGGTAACTGAGACACCTTCAGCAGGTGACTTCTCTCACtccccagaacaatcatgcaaagtggggattatcc-catcatataggagagaacactgaaatccaaagacaccatcta i mm10.chr5 C 0 I 1 s canFam3.chr13 47999195 170 + 63241923 ATTTTAATTTGGAACACAGGACTAGGGTAAGAAAGGGAAAAGAAAGGGCATTGAAGCTGATAG----TCTactaaaccaggtgccttaagtttgagatttcatttaatccccacaacaaccaaggaaagtaggaatcattatcattatacagaagagaaaaatgaggttcaaag---------- i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1784468 41 + 3286835 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=152839.000000 s hg38.chr4_KI270787v1_alt 57912 15 + 111943 ttttgccaaaataac s panTro5.chr4 119622594 15 - 194502333 ttttgccaaaataac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036010 15 - 195804263 ttttgccaaaataac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4467278 15 - 17550833 ttttgccaaaataac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69340170 15 - 118206036 ttttgccaaaataac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544017 15 - 190429646 ttttgtcaaaataac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110712155 15 - 189454096 ttttgtcaaaataac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13280185 15 + 26754465 ttttgtcaaaataac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4181451 15 - 5137665 ttttgtcaaaataac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122896304 15 - 135778131 ttttgtcaaaataac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2001150 15 + 2427316 ttttgtcaaaatagc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1292041 15 + 1448899 ttttgccaaaataac i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1784509 15 + 3286835 ttttgccaaaatcac i micMur3.chrUn_NW_017968520v1 I 41 C 0 s proCoq1.NW_012140747v1 1872338 15 + 4188776 ttttgccaaaatcac i proCoq1.NW_012140747v1 I 1 C 0 s otoGar3.GL873602 8608946 15 + 8790067 ttttgcaaaaatcac i otoGar3.GL873602 I 1 I 1986 s mm10.chr5 76412903 15 + 151834684 ctttatccaaatcac i mm10.chr5 I 1 C 0 s canFam3.chr13 47999365 15 + 63241923 ttttgccataatcac i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=2000405.000000 s hg38.chr4_KI270787v1_alt 57927 228 + 111943 acacttaagaa-gg-ggggcagtcagaatttgaacttaggaccagctgactccaaagataccattgctgtattcccattgTCATTTGTCCTCAT---TATTT-TTTAGTGCC-AAATCTTTGAGAACACAGCCCCCAATGCATATTTCCCATTGTGT-CATTTA---TGTTTTCCCCTTTAAATTACATTGTATCATAA------------ATTA------GAGACTTT-AAAAATTGGTCTAAATTCACTTCCAGTG s panTro5.chr4 119622609 228 - 194502333 acacttaagga-gg-ggggcagtcagaatttgaacttaggaccagctgactccaaagataccattgctgtattcccattgTCATTTGTCCTCAT---TATTT-TTTAGTGCC-AAATCTTTGAGAACACAGCCCCCAGTGCATATTTCCCATTGTGT-CATTTA---TGTTTTCCCCTTTAAATTACATTGTATCATAA------------ATTA------GAGACTTT-AAAAATGGGTCTAAATTCACTTCCAGTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036025 228 - 195804263 acacttaagga-gg-ggggcagtcagaatttgaacttaggaccagctgactccaaagataccattgctgtattcccattgTCATTTGTCCTCAT---TATTT-TTTAGTGCC-AAATCTTTGAGAACACAGCCCCCAGTGCATATTTCCCATTGTGT-CATTTA---TGTTTTCCCCTTTAAATTACATTGTATCATAA------------ATTA------GAGACTTT-AAAAATGGGTCTAAATTCACTTCCAGTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4467293 227 - 17550833 agacttaagaa-gg-ggggcagtcagaatttgaacttaggaccagctgactctaaagataccattgctgtattcacATTGTCATTTGTCATCAT---TA-TT-TTTAGTGCC-AAATCTTTGAGAACACAGCCCCCAATGCATATTTCCCATTGTGC-CATTTA---TGTTTTCCCCTTTAAATTACATTGTATCATAA------------ATTA------GAGACTTT-AAAAATTGGTCTAAATTCACTTCCAGTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69340185 226 - 118206036 acacttaagaaggg-ggggcagtcagaatttgaacttaggacaagctgactccaaagATACCATTGCCGTGTTCACATTGTCATTTATCATCAT------TT-TTTAGTGCC-AAATCTTTGAGAACACAGCCCCCAGTGCATATTTCCCATTGTGT-CATTTA---TTTTTTCCCCTTTAAATTACATTGTATCATAA------------ATTA------GAGACTTT-AAAAATTGGTCTAAATTCACTTCCAGTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544032 233 - 190429646 acacttaacaa-gg-gaagcagtgagaatttgaacttaggacaagttgactccaaagataccattgctgtattcacATTGTCATTTGTCATCATTGTTATTT-TTTAGTGCC-AAATCTTTGAGAACACAGCCCCCAATGCATATTTCCCATTGTGT-CATTTA-TTTTTTTTCCCCTTTAAATTACATTGTGTCATAA------------ATTA------GAGACTTT-AAAAATTGGTCTAAATTCACTTCCAGTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110712170 232 - 189454096 acacttaacaa-gg-gaagcagtgagaatttgaac-taggacaagttgactccaaagataccattgctgtattcacATTGTCATTTGTCATCATTGTTATTT-TTTAGTGCC-AAATCTTTGAGAACACAGCCCCCAATGCATATTTCCCATTGTGT-CATTTA-TTTTTTTTCCCCTTTAAATTACATTGTGTCATAA------------ATTA------GAGACTTT-AAAAATTGGTCTAAATTCACTTCCAGTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13280200 231 + 26754465 acacttaacaa-gg-gaagcagtgagaatttgaac-taggacaagttgactccaaagataccattgctgtattcacATTGTCATTTGTCATCATTGTTATTT-TTTAGTGCC-AAATCTTTGAGAACACAACCCCCAATGCATATTTCCCATTGTGT-CATTTA--TTTTTTTCCCCTTTAAATTACATTGTGTCATAA------------ATTA------GAGACTTT-AAAAATTGGTCTAAATTCACTTCCAGTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4181466 231 - 5137665 acacttaacaa-gg-gaagcagtgagaatttgaacttaggacaagttgactccaaagataccattgctgtactcacattgtcATTTGTCATCATTGTTATTT-TTTAGTGCC-AAATCTTTGAGAACACAGCCCCCAATGCATATTTCCCATTGTGT-CATTTA---TTTTTTCCCCTTTAAATTACATTGTGTCATAA------------ATTA------GAGACTTT-AAAAATTGGTCTAAATTCACTTCCAGTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122896319 231 - 135778131 acacttaacaa-gg-gaagcagtgagaatttgaacttaggacaagttgactccaaagataccattgctgtattcacATTGTCATTTGTCATCATTGTTATTT-TTTAGTGCC-AAATCTTTGAGAACACAGCCCCCAATGCATATTTCCCATTGTGT-CATTTA---TTTTTTCCCCTTTAAATTACATTGTGTCATAA------------ATTA------GAGACTTT-AAAAATTGGTCTAAATTCACTTCCAGTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2001165 231 + 2427316 acacttaacaa-gg-gaagcagtgagaatttgaacttaggacaagttgactccaaagataccattgctgtattcacATTGTCATTTGTCATCATTGTTATTT-TTTAGTGCC-AAATCTTTGAGAACACAGCCCCCAATGCATATTTCCCATTGTGT-CATTTA---TTTTTTCCCCTTTAAATTACATTGTGTCATAA------------ATTA------GAGACTTT-AAAAATTGGTCTAAATTCACTTCCAGTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1292056 231 + 1448899 acacttaacaa-gg-ggagcagtgagaatttgaacttaggacaagctgactccaaagataccattgctgtattcacATAGTCATTTGTCATCATTGTTATTT-TTTAGTGCC-AAATCTTTGAGAACACAGCCCTCAATGCATATTTCCCATTGTGT-CATTTA---TTTTTTCCCCTTTAAATTACATTGTGTCATAA------------ATTA------GAGACTTT-AAAAATTGGTCTAAATTCACTTCCAGTG i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1784524 235 + 3286835 acacataacat-gtgggggcagtcagaatgtgaactcaggacagtctgcctccaaagataccattgctgtattcacagtgtcaTTTGTCACAATTAGTATTTATTTAATGCCAAAATCTTTGAGAACATAGCTCCCAATGCTTATTTCTACTTACAG-CATTTA---TTTTTCTCCCTTTAAATTATATTGTGTCATAA------------ATTA------GAGACTTTTAAAAACTAGTCTAGATTTGCTTCCAGTG i micMur3.chrUn_NW_017968520v1 C 0 I 76 s proCoq1.NW_012140747v1 1872353 232 + 4188776 acacataacac-gt-ggggcagtcagaatttgaactcaggacagtctgcctccaaagataccattgctgtattcacACTGTCATTTGTTACAATTAGTATTTATTTAATGCC-AAATCTTTGAGAACACAGCTCTCGATGCATATTTCTCCTCATGT-CATTTA---TTTTTC-CCCTTTAAATTATATTGTTCCATAA------------ATTG------GAGACTTTTAAAAATTAGTCTAACTTTGCTTCCGGTG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8610947 250 + 8790067 acacataacat-gt-ggggtggtcagaatttgaactcaggaagttctaactccaaagacaccattgctgtattcacactaccatttgccATAATTCGTATTTATTTAATGCC-AAATGTTTGAGAACACAGCACCCAAAGCATATTTCTCCTCATGC-CATTAA---ATTTTTCCCTTTTAAATTATATTGTGTCATAATATAATTGTGTCATTGTTTTATAAGACTTTAAAAATGTAGTCTAAA-TTGCTTCCAGTG i otoGar3.GL873602 I 1986 C 0 s mm10.chr5 76412918 181 + 151834684 aatggttacaa-cc-agagcagccagaacttgaactcaggacaatttgactccaaagATACTGGCACTGTAGTCCCATGGGCCGCTGTTATAATTACAATTTATTTAATGCC-AAATCTCTGAGAACACAGGCCCCTTCCCCCACCCCCACCCCCGTGCATTCCCCTTCTGTTCCCCTCTAA-------TG------------------------------------------------------------------- i mm10.chr5 C 0 C 0 s canFam3.chr13 47999380 224 + 63241923 ataggtgatgt-gt-agagtagtcaggatctgaactcaggacagtctgactccaaggATATTGTTGCTATATTCACAATGTCATTTGTCATAATTATTAGTA-TTTAATGC--AAATCTTTGAGAACACAGCCCCCAATGCGTAGTTCCTCT--TGT-CACTTA---TTTTTTCCTCTTTAAATTATATTGTGCCATA-----------------------GAGACTTTGAAAAAATAGTCTAAATTCACCTCCAGTG i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=224183.000000 s hg38.chr4_KI270787v1_alt 58155 37 + 111943 CCTAT-GGGAGGGAAATAAGGGTCAGACCTCTCTGCAA s panTro5.chr4 119622837 37 - 194502333 CCTAT-GGGAGGGAAATAAGGGTCAGACCTCTCTGCAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036253 37 - 195804263 CCTAT-GGGAGGGAAATAAGGGTCAGACCTCTCTGCAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4467520 37 - 17550833 CCTAT-GGGAGGGAAATAAGGGTCAGACCTCTCTGCAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69340411 37 - 118206036 CCTAT-GGGAGGGAAATAAGGGTCAGAGCTCTCTGCAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544265 37 - 190429646 CCTAT-GGGAGGGAAATAAGGGCCAGACCTCTCTGCGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110712402 37 - 189454096 CCTAT-GGGAGGGAAATAAGGGCCAGACCTCTCTGCGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13280431 37 + 26754465 TCTAT-GGGAGGGAAATAAGGGCCAGACCTCTCTGCGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4181697 37 - 5137665 CCTAT-GGGAGGGAAATAAGGGCCAGACCTCTCTGCGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122896550 37 - 135778131 CCTAT-GGGAGGGAAATAAGAGCCAGACCTCTCTGCGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2001396 37 + 2427316 CCTAT-GGGAGGGAAATAAGTGCCAGACCTCTCTGCAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1292287 37 + 1448899 CCTAT-GGGAGGGAAATAAGGGTCAGACCTCTCTGCGA i colAng1.NW_012119221v1 C 0 C 0 s proCoq1.NW_012140747v1 1872585 11 + 4188776 GCCAT-GGGAGG-------------------------- i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8611197 11 + 8790067 ACCAC-AGGAGG-------------------------- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76413099 33 + 151834684 --GATAAAGTGGGAAAT---GGTTACACCTATCTATGA i mm10.chr5 C 0 C 0 s canFam3.chr13 47999604 37 + 63241923 GCTAT-GAAAGGGGGAGTAGAGTCAGACCTATCTGGGA i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1784759 76 + 3286835 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I e saiBol1.JH378162 8174491 0 - 15139346 C e calJac3.chr3 53013967 0 - 190850796 C a score=488026.000000 s hg38.chr4_KI270787v1_alt 58192 62 + 111943 -ATGATGTGTGGAGG----CAGTCAAGAGGAAATCAGTGGGTTGGATGAAC--A---------------------------------AGCTTCTGCAGGGTC s panTro5.chr4 119622874 62 - 194502333 -ATGATGTGTGGAGG----CAGTCAAGAGGAAATCAGTGGGTTGGATGAAC--A---------------------------------AGCTTCTGCAGGGTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036290 62 - 195804263 -ATGATGTGTGGAGG----CAGTCAAGAGGAAATCAGTGGGTTGGATGAAC--A---------------------------------AGCTTCTGCAGGGTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4467557 62 - 17550833 -ATGATGTGTGGAGG----CAGTCAAGAGGAAATCAGTGGGTTGGATGAAC--A---------------------------------AGCTTCTGCAGGGTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69340448 62 - 118206036 -ATGATGTGTGGAGG----CAGTCAAGAGGAGATCAGTGGGTTGGATGAAC--A---------------------------------AGCTTCTGCAGGGTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544302 62 - 190429646 -ATGATGTGTGGAGG----CAGTCAAGAGGAAATCAGTGTGTTGGATGAAC--A---------------------------------AGCTTCTGCAGGGTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110712439 62 - 189454096 -ATGATGTGTGGAGG----CAGTCAAGAGGAAATCAGTGTGTTGGATGAAC--A---------------------------------AGCTTCTGCAGGGTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13280468 62 + 26754465 -ATGATGTGTGGAGG----CAGTCAAGAGGAAATCAGTGTGTTGGATGAAC--A---------------------------------AGCTTCTGCAGGGTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4181734 62 - 5137665 -ATGATGTGTGGAGG----CAGTCAAGAGGAAATCAGTGTGTTGGATGAAC--A---------------------------------AGCTTCTGCAGGGTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122896587 62 - 135778131 -ATGATGTGTGGAGG----CAGCCAAGAGGAAATCAGTGTGTTGGATGAAC--A---------------------------------AGCTTCTGCAGGGTC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2001433 62 + 2427316 -ATGATGTGTGGAGG----CAGTCAAGAGGAAACCAGTGTGTTGGATGAAC--A---------------------------------AACTTCTGCAGGGTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1292324 62 + 1448899 -ATGATGTGTGGAGG----CAGTCAAGAGGAAATCAGTGTGTTGGATGAAC--A---------------------------------AACTTCTGCAGGGTC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53013967 49 - 190850796 -GTGATGTGTGGAGGCAGTCAGTCAAGAGGAAATCAGTGTGTTGGATGAA---------------------------------------------------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8174491 49 - 15139346 -GTGATGTGTGGAGGCAGTCAGTCAAGAGGAAATCAGTATGTTGGATGAA---------------------------------------------------- i saiBol1.JH378162 C 0 C 0 s proCoq1.NW_012140747v1 1872596 51 + 4188776 -------------GG----CAGCCAAGGGGAAAGCAGGGTGCTGGATGAACTTC---------------------------------AGCTCCTGAGGGGT- i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8611208 46 + 8790067 -------------GG----CAGCCAAGAGGAAAGCAGGGTGCTGAATATACCTG---------------------------------AGCCCCT-----CT- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76413132 95 + 151834684 -ATCCTACTTCAAGG----AAGACAAGAAGAAAGCAGAGTACTGGATGAGC--AGGCCAGAGCACACAGCCTCAGATGAGGTCCAACAGCCTCAGAGGGACC i mm10.chr5 C 0 C 0 s canFam3.chr13 47999641 74 + 63241923 ATTTGTGTTTGGAGG----CAGCCAAGAGGAAACCAGGGTACTAGATGGAC--AAGCTGGACCTC----------------------AGCTTCTGAGGGGTC i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1784759 76 + 3286835 I e dasNov3.JH568349 4093230 904 - 5279953 I e aotNan1.NW_018493494v1 9376210 50 - 11631747 I e cebCap1.NW_016107439v1 6958169 50 - 7304997 I a score=181877.000000 s hg38.chr4_KI270787v1_alt 58254 14 + 111943 CCCTGAGGATGAAG s panTro5.chr4 119622936 14 - 194502333 CCCTGAGGATGAAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036352 14 - 195804263 CCCTGAGGATGAAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4467619 14 - 17550833 CCCTGAGGATGAAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69340510 14 - 118206036 CCCTGAGGATGAAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544364 14 - 190429646 CCCTGAGGGGGAAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110712501 14 - 189454096 CCCTGAGGGGGAAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13280530 14 + 26754465 CCCTGAGGGGGAAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4181796 14 - 5137665 CCCTGAGGGGGAAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122896649 14 - 135778131 CCCTGAGGGGGAAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2001495 14 + 2427316 CCCTGAGGGGGAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1292386 14 + 1448899 CCCTGAGGGGGAAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53014016 14 - 190850796 CCCTGAGGATGAAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8174540 14 - 15139346 CCCTGAGGATGAAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6958219 14 - 7304997 CCCTGAAGATGAAG i cebCap1.NW_016107439v1 I 50 C 0 s aotNan1.NW_018493494v1 9376260 14 - 11631747 CCCTGAGGATGAAG i aotNan1.NW_018493494v1 I 50 C 0 s proCoq1.NW_012140747v1 1872647 14 + 4188776 CCCCGAGGATGAAG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8611254 14 + 8790067 CTCTGAGGATGAGG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76413227 14 + 151834684 CACAGAGGAAGGCA i mm10.chr5 C 0 C 0 s canFam3.chr13 47999715 13 + 63241923 -CCAGAAGACAGAG i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1784759 76 + 3286835 I e dasNov3.JH568349 4093230 904 - 5279953 I a score=937466.000000 s hg38.chr4_KI270787v1_alt 58268 65 + 111943 GTGAACCAAAAGCAGCAACCAAAACTT-GGAGTATAGGGCTAGAGT----GTGTTTGGTGAGGCCAGGTT s panTro5.chr4 119622950 65 - 194502333 GTGAACCAAAAGCAGCAATCAAAACTT-GGAGTATAGGGCTAGAGT----GTGTTTGGTGAGGCCAGGTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036366 65 - 195804263 GTGAACCAAAAGCAGCAATCAAAACTT-GGAGTATAGGGCTAGAGT----GTGTTTGGTGAGGCCAGGTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4467633 65 - 17550833 GTGAACCAAAAGCAGCAACCAAAACTT-GGAGTATAGGGCTAGAGT----GTGTTTGGTGAGGCCAGGTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69340524 65 - 118206036 GTGAACCAAAAGCAGCAACCAAAACTT-GGAGAATAGGGCTAGAGT----GTGTTTGGTGAGGCCAGGTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544378 65 - 190429646 GTGAACCAAAAGTAGCAATCAAAACTT-GGAGAATAGGGCCAGAGT----GTGTTTGGTGAGGCCAGGTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110712515 65 - 189454096 GTGAACCAAAAGTAGCAATCAAAACTT-GGAGAATAGGGCCAGAGT----GTGTTTGGTGAGGCCAGGTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13280544 65 + 26754465 GTGAACCAAAAGTAGCAACCAAAACTT-GGAGAATAGGGCCAGAGT----GTGTTTGGTGAGGCCAGGTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4181810 65 - 5137665 GTGAACCAAAAGCAGCAACCAAAACTT-GGAGAATAGGGCCAGAGT----GTGTTTGGTGAGGCCAGGTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122896663 65 - 135778131 GTGAACCAAAAGCAGCAACCAAAACTT-GGAGAATACGGCCAGAGT----GTGTTTGGTGAGGCCAGGTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2001509 65 + 2427316 GTGAACCAAAAGCAGCAACCAAAACTT-GGAGAATAGGGCCAGAGT----GTGTTTGGTGAGGCCAGGTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1292400 65 + 1448899 GTGAACCAAAAGCAGCAACCAAGACTT-GGAGAATAGGGCCAGAGT----GTGTTTGGTGAGGCCAGGTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53014030 65 - 190850796 GTGAACCAACACCAGCAACCAAAACTT-GGAGAATAGGGCGAGAGT----GTGCTTGGTGAGGTAAGTTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8174554 65 - 15139346 GTGAACCAACAGCAGCAACCAAAATTC-AGAGAATAGGGCCAGAGT----GTGCTTGGTGAGGTAAGTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6958233 65 - 7304997 GTGAACCAACAGCAGCAACCAAAACTT-GGAGAATAGGGCCAGAGT----GTGCTTGGTGAGGTAAATTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9376274 65 - 11631747 GTGAACCAACAGCAGCAACCAAAACTT-GGAGAACAAGGCCAGAGT----GTGCTTGGTGAGGTAAGTTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1784835 65 + 3286835 GTGAACCAAAAGCAGAGACCAAAACTT-GGAGAATAGGGCCAGAGT----GTGTTTGGTGAGCCCAGGCT i micMur3.chrUn_NW_017968520v1 I 76 C 0 s proCoq1.NW_012140747v1 1872661 65 + 4188776 GTGAACCAAAAGCAGAGACGAAAACTT-GCAGAATGGGGCCAGAGT----GCATTTGGTGCACCCAGGCT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8611268 61 + 8790067 GCAAATCAAAAGCAGAGACCAAAACTG-GGCGGATGGGGCCAGAGA----G----TGGTGAGCTCAGACT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76413241 69 + 151834684 TTGAGCCAAGAGAAGAGACTGTAACAC-GAAAGAATGGAACAGAATCAGGGGGTTTGATGAAACCAGGTT i mm10.chr5 C 0 I 378 s canFam3.chr13 47999728 64 + 63241923 GTGTACCAAAAGCAGAGACCAAAACTTGGGAGTATAGAGCTAG--T----GTGTTTGGTGATTCTAGGTG i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4093230 904 - 5279953 I a score=784425.000000 s hg38.chr4_KI270787v1_alt 58333 69 + 111943 GGATCCAGAAAACTAG---ACTCCTCCCATGAACTTTTCACAGTATTCCACAGCATTTCACAGACACACAGT s panTro5.chr4 119623015 69 - 194502333 GGATGAAGAAAACTAG---ACTCCTCCCATGAACTTTTCACAGTATTCCACAGCATTTCACAGACACACAGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036431 69 - 195804263 GGATGAAGAAAACTAG---ACTCCTCCCATGAACTTTTCACAGTATTCCACAGCATTTCACAGACACACAGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4467698 68 - 17550833 GGATGCAGAAAACTAG---ACTCCTCCCATGAACTTTTCACAGTATT-CACAGCATTTTACAGACACACAGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69340589 59 - 118206036 GGATGCAGAAAGCTAG---ACTCCTCCCATGAACTTTT----------CAAAGCATTTCACAGACACACAGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544443 59 - 190429646 GGATGCAGAAAACTAG---ACTCCTCCCATGAGCTTTT----------CACAGCATTTCACAGACACACAGT i rheMac8.chr5 C 0 I 2 s macFas5.chr5 110712580 59 - 189454096 GGATGCAGAAAACTAG---ACTCCTCCCATGAGCTTTT----------CACAGCATTTCACAGACACACAGT i macFas5.chr5 C 0 I 2 s macNem1.NW_012012466v1 13280609 59 + 26754465 GGATGCAGAAAACTAG---ACTCCTCCCATGAGCTTTT----------CACAGCATTTCACAGACACACAGT i macNem1.NW_012012466v1 C 0 I 2 s cerAty1.NW_012001307v1 4181875 59 - 5137665 GGATGCAGAAAACTAG---ACTCCTCCCATGAGCTTTT----------CACAGCATTTCACAGACACACAGT i cerAty1.NW_012001307v1 C 0 I 3 s chlSab2.chr7 122896728 59 - 135778131 GGATGCAGAAAACTAG---ACTCCTCCCATGAGCTTTT----------CACAGCATTTCACAGACACACAGT i chlSab2.chr7 C 0 I 2 s manLeu1.NW_012104388v1 2001574 59 + 2427316 GGATGCAGAAAACTAG---ACTCCTCCCATGAGCTTTT----------CACAGCATTTCACAGACACACAGT i manLeu1.NW_012104388v1 C 0 I 80 s colAng1.NW_012119221v1 1292465 59 + 1448899 GGATGCAGAAAACTAG---ACTCCTCCCATGAACTTTT----------CACAGCATTTCACAGACACACAGT i colAng1.NW_012119221v1 C 0 I 2 s calJac3.chr3 53014095 69 - 190850796 GGATGCAGAAAACCGG---ACTCCTCCCATGAACTTTTCACAGCGTTCCACAACATTTCACAGACACACAGT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8174619 69 - 15139346 GGATGCAGAAAACTGG---ACTCCTCCCATGAACTTTTCACAGCGTTTCACAACATTTCGCAGACACACAGT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6958298 69 - 7304997 GGATGCAGAAAACTGG---ACTCCTCCCATGAACTTTTCACAGCGTTCCACAACATTTCATAGACACACAGT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9376339 69 - 11631747 GGATGCAGAAAACTGG---ACTCCTCCCATGAACTTTTCACAGCGTTCCACAACATTTCACAGACACACAGT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1784900 50 + 3286835 GGATGCAGAAAACTAG---GCACCTCCAGTGAAGT-------------------ATTTCACAGACACACAAT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1872726 69 + 4188776 GGATGCAGAAAACTAG---ACTCTTCCAATGAAGTTTTTGCAGCATTCCACAGCATTTCACAGACACACAGT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8611329 59 + 8790067 GGATGCAGAAGACTGG---AGTCCCCAGGTGACGTTTCTGCAGC----------CTTCCATGGCAGCTCAGA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76413688 70 + 151834684 -AGTCCAAACAAGTAGCTAACACATTCCTTGAATTGGTCATAGCATCCCAGGGCCTCTCCCA-ACACACAGC i mm10.chr5 I 378 C 0 s canFam3.chr13 47999792 66 + 63241923 GAATGTAGAAAATTAG---ACTCCTCCAATTAACTTCACTCTGCATCTCATAGCATCT-ACAGATGCAAC-- i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4093230 904 - 5279953 I a score=838949.000000 s hg38.chr4_KI270787v1_alt 58402 79 + 111943 GGGGGCCGACGGCTCCAATGGAG--CCAGTGTCAGTCCTAAGGAACTTCAAGGAGGATATGTAAACATATAGAT----------------------TTTT-TTG-- s panTro5.chr4 119623084 78 - 194502333 GGGGGCCGACGGCTCCAATGGAG--CCAGTGTCAGCCCTAAGGAACTTCAAGGAGGATATGTAAACATATAGAT----------------------TTTT-T-G-- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036500 78 - 195804263 GGGGGCCGACGGCTCCAATGGAG--CCAGTGTCAGCCCTAAGGAACTTCAAGGAGGATATGTAAACATATAGAT----------------------TTTT-T-G-- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4467766 78 - 17550833 GGGGGCCGACGGCTCCAATGGAG--CCAGTGTCAGCCCTAAGGAACTTCGAGGAGGATATGTAAACATATAGAT----------------------TTTT-T-G-- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69340648 78 - 118206036 GGGGGCCGATGGCTCCAATGGAG--CCAGTGTCAGCCCTAAGGAACTTTGAGGAGGTTATGTAAACATATAGAT----------------------TTTT-T-G-- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544504 78 - 190429646 GGGGGTCGATGGCTCCAATGGAG--CCAGTGTCATTCCTAAGGAACTTCCAGGAGGATATGTAAACATATAGAT----------------------TTTT-T-C-- i rheMac8.chr5 I 2 C 0 s macFas5.chr5 110712641 78 - 189454096 GGGGGTCGATGGCTCCAATGGAG--CCAGTGTCATTCCTAAGGAACTTCCAGGAGGATATGTAAACATATAGAT----------------------TTTT-T-C-- i macFas5.chr5 I 2 C 0 s macNem1.NW_012012466v1 13280670 78 + 26754465 GGGGGTCGATGGCTCCAATGGAG--CCAGTGTCAGTCCTAAGGAACTTCCAGGAGGATATGTAAACATATAGAT----------------------TTTT-T-C-- i macNem1.NW_012012466v1 I 2 C 0 s cerAty1.NW_012001307v1 4181937 77 - 5137665 GGGGGTCGATGGCTCCAATGGAG--CCAGTGTCAGCCCTAAGGAACTTCCAGGAGGATATGTAAACATATAG-T----------------------TTTT-T-C-- i cerAty1.NW_012001307v1 I 3 C 0 s chlSab2.chr7 122896789 78 - 135778131 GGGGGTCGATGGCTCCAATGGAG--CCAGTGTCAGCCCTAAGGAACTTCCAGGAGGATACGTAAACATATAGAT----------------------TTTT-T-C-- i chlSab2.chr7 I 2 C 0 s colAng1.NW_012119221v1 1292526 78 + 1448899 GGGGGTCAATGGCTCCAATGGAG--CCAGTGTCAGCCCTAAGGAACTTCCAGGAGGATATGTAAACATATGGAT----------------------TTTT-T-C-- i colAng1.NW_012119221v1 I 2 C 0 s calJac3.chr3 53014164 76 - 190850796 GGGGGCCGATGGCTCCAGTGGGG--CCAGCTTCAGCCCTAAGGAACTTCGAGGAGGATATGTAAACATATAGAT----------------------TTTT------ i calJac3.chr3 C 0 I 1 s saiBol1.JH378162 8174688 78 - 15139346 GGGGGCCGATGGCTCCAATGGAG--CCAGCTTCAGCCCTAAGGAACTTCAAGGAGGATATATAAACATGTAGAT----------------------TTTT-T-T-- i saiBol1.JH378162 C 0 I 2 s cebCap1.NW_016107439v1 6958367 78 - 7304997 GGGGGCCGATGGCTCCAATGGAG--CCAGCTGCAGCCCTAAGGAACTTCGAGGAGGATATGTAAACATACAGTT----------------------TTTT-T-T-- i cebCap1.NW_016107439v1 C 0 I 2 s aotNan1.NW_018493494v1 9376408 79 - 11631747 GGGGGCCGATGGCTCCAATGGAG--CCAGCTTCAGCCCTAAGGAACTTTGAGGAGGATATGTAAACATATAGAT----------------------TTTTTT-T-- i aotNan1.NW_018493494v1 C 0 I 2 s micMur3.chrUn_NW_017968520v1 1784950 101 + 3286835 GAGGGCAGATGGCACTAAAGAGG-TCTGGCTTCAGCCCTAAGGAACTGCAAGGAGCATATGTAAATATGTAGGTTTGGTTTGGGGGTTTTGGGGGGTTTT-T-T-- i micMur3.chrUn_NW_017968520v1 C 0 I 2 s proCoq1.NW_012140747v1 1872795 79 + 4188776 GGGGGCAGATGGCTCTAACGAGG-TCTAGCTTCAGCCCTAAGGAACTGCAAGGAGCATATGTAAACACTTAGAT----------------------TTTT-T-T-- i proCoq1.NW_012140747v1 C 0 I 2 s otoGar3.GL873602 8611388 81 + 8790067 GGGAGCAGACAGCTCTAGCAAAG-TACAGCTCCAGATCTAAGGAGCTATGAGAAACAAACATAAACATACAGGTAT--------------------TTTT-C-T-- i otoGar3.GL873602 C 0 I 2 s mm10.chr5 76413758 75 + 151834684 --AAACTGTGAGCTCTGATAGGG-ACCAGCCCGAGGCACTAAGAATCAGGAAGAGGACA-GTCAGTATAGATGG----------------------TCTT-T---- i mm10.chr5 C 0 C 0 s canFam3.chr13 47999858 72 + 63241923 GGGGACAGAAGGCTCTAACAGGGGACCAA--------CTAAGAAACTGGGAGGAGAATATGTAAACAT--AGAT----------------------TTTT-A-GGG i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4093230 904 - 5279953 I e manLeu1.NW_012104388v1 2001633 80 + 2427316 I a score=1071198.000000 s hg38.chr4_KI270787v1_alt 58481 77 + 111943 GTCCAAATATTTATTG-CAATTCTCTTGATTTTTAAAATTGTATACTTTATA---------------TCCAAGAAAATAAAAA--------------------------ATAATTTAAA s panTro5.chr4 119623162 77 - 194502333 GTCCAAATATTTATTG-CAATTCTCTTGATTTTTAAAATTGTATACTTTATA---------------TCCAAGAAAATAAAAA--------------------------ATAATTTAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036578 77 - 195804263 GTCCAAATATTTATTG-CAATTCTCTTGATTTTTAAAATTGTATACTTTATA---------------TCCAAGAAAATAAAAA--------------------------ATAATTTAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4467844 77 - 17550833 GTCCAAATATTTATTG-CAATTCTCTTGATTTTTAAAATTGTATACTTTATA---------------TCCAAGAAAATAAAAA--------------------------ATAATTTAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69340726 77 - 118206036 GTACAAATATTTATTG-CAATTCTCTTGATTTTTAAAATTGTATACTTTATA---------------TCCAAGAAAATAAAAA--------------------------ATAATTTAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544582 77 - 190429646 GTGCAAATATTTATTG-CATTTCTCTTGATTTTTAAGATTGTATACTTTATG---------------TCCAAGAAAATAAAAA--------------------------ATAATTTAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110712719 77 - 189454096 GTGCAAATATTTATTG-CATTTCTCTTGATTTTAAAAATTGTATACTTTATG---------------TCCAAGAAAATAAAAA--------------------------ATAATTTAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13280748 77 + 26754465 GTGCAAATATTTATTG-CATTTCTCTTGATTTTTAAAATTGTATACTTTATG---------------TCCAAGAAAATAAAAA--------------------------ATAATTTAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4182014 77 - 5137665 GTGCAAATATTTATTG-CATTTCTCTTGATTTTTAAAATTGTATACTTTATG---------------TCCAAGAAAATAAAAA--------------------------ATAATTTAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122896867 77 - 135778131 GTGCAAATATCTATTG-CATTTCTCTTGATTTTTAAAATTGTATACTTTATG---------------TCCAAGAAAATAAAAA--------------------------ATAATTTAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2001713 77 + 2427316 GTGCAAATATTTATTG-CATTTCTCTTGATTTTTAAAATTGTATACTTTATG---------------TCCAAGAAAATAAAAA--------------------------ATAATTTAAA i manLeu1.NW_012104388v1 I 80 C 0 s colAng1.NW_012119221v1 1292604 77 + 1448899 GTGCAAATGTTTATTG-CATTTCTCTTGATTTTTAAAATTGTATACTTTATG---------------TCCAAGAAAACAAAAA--------------------------ATAATTTAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53014241 77 - 190850796 GTACAACTATGTATTG-CAATTCTCTTGATTTTTTAAAATGTATACTCTATG---------------TCCAAGAAAATGAAAA--------------------------ATAATTTAAA i calJac3.chr3 I 1 C 0 s saiBol1.JH378162 8174768 77 - 15139346 GTACAAATATGTATTG-CAATTCTCTTGATTTTTTAAAATGTATACTTTATG---------------TCCAAGAAAATGAAAA--------------------------ATAATTTAAA i saiBol1.JH378162 I 2 C 0 s cebCap1.NW_016107439v1 6958447 77 - 7304997 GTACAAATATATATTG-CAATTCTCTCGATTTTTTAAAATGTATACTTTATG---------------TCCAAGAAAATGAAAA--------------------------ATAATTTAAA i cebCap1.NW_016107439v1 I 2 C 0 s aotNan1.NW_018493494v1 9376489 77 - 11631747 GTACAAATATGTATTG-CAATTCTCTTGATTTTTTAAAACGTATACTTTATG---------------TCTAAGAAAATGAAAA--------------------------ATAATTTAAA i aotNan1.NW_018493494v1 I 2 C 0 s micMur3.chrUn_NW_017968520v1 1785053 77 + 3286835 GTGTAAATATTTATTG-CAATTCTCTTGATTTTTAAACATTTATACTTTATG---------------CTCAAGAAAACTGAAA--------------------------ATAATTTAAA i micMur3.chrUn_NW_017968520v1 I 2 C 0 s proCoq1.NW_012140747v1 1872876 77 + 4188776 CTATAAATATTTATTG-CAATTCTCTTGGTTTTTAAAAATTTATATTTCATG---------------TTCAAGAAAACTGAAA--------------------------AAAATTTAAA i proCoq1.NW_012140747v1 I 2 C 0 s otoGar3.GL873602 8611471 78 + 8790067 TTCTAAATATTTATTGTTAATTGTCTTGatttttaaaaatttatactttata---------------tttaagaaaactgaaa--------------------------ataatttaaa i otoGar3.GL873602 I 2 C 0 s mm10.chr5 76413833 62 + 151834684 GTATCAACAGCCACTG-ATATTCTCTTGATTT-------CACATACT-----------------------AAGAAACACAAAA--------------------------GCAATGTAAT i mm10.chr5 C 0 C 0 s canFam3.chr13 47999930 117 + 63241923 GTACAAAAAGTCATTG-CAATTCTCTTGatttttaaaatt-tatactttataaatataaaGACACCTTTAAGGAAAATTAAAATAACCATTTTTCCACTTTCtttttttaaaatttaaa i canFam3.chr13 C 0 I 147 e dasNov3.JH568349 4093230 904 - 5279953 I a score=847931.000000 s hg38.chr4_KI270787v1_alt 58558 76 + 111943 CAGCAA---------------------------------------------------------TCTCTA-G-TTTTCCTCCTAAATGTCATCTTTCAAATACAAATCTTGTATG----------------TTTTTATACAGT-ATAAATATT s panTro5.chr4 119623239 76 - 194502333 CAGCAA---------------------------------------------------------TCTCTA-G-TTTTCCTCCTAAATGTCATCTTTCAAATACAAATCTTGTATG----------------TTTTTATACAGT-ATAAATATT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036655 76 - 195804263 CAGCAA---------------------------------------------------------TCTCTA-G-TTTTCCTCCTAAATGTCATCTTTCAAATACAAATCTTGTATG----------------TTTTTATACAGT-ATAAATATT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4467921 63 - 17550833 CAGCAA---------------------------------------------------------TCTCCA-G-TTTTCCTCC-------------TCAAATACAAATCTTGTATG----------------TTTTTATACAGT-ATAAATATT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69340803 75 - 118206036 CAGCAA----------------------------------------------------------CTCCA-G-TTTTCCTCCTAAATGTCATCTTTCAAATACAAATCTTGTATG----------------TTTTTATACAGT-ATAAATATT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544659 76 - 190429646 CAGCAA---------------------------------------------------------TCTCCA-G-TTTTCCTCCTAAATGTCATCTTTCAAATACAAATGTTGTATG----------------TTTTTATACAGT-ATAAATATT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110712796 76 - 189454096 CAGCAA---------------------------------------------------------TCTCCA-G-TTTTCCTCCTAAATGTCATCTTTCAAATACAAATGTTGTATG----------------TTTTTATACAGT-ATAAATATT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13280825 76 + 26754465 CAGCAA---------------------------------------------------------TCTCCA-G-TTTTCCTCCTAAATGTCATCTTTCAAATACAAATGTTGTATG----------------TTTTTATACAGT-ATAAATATT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4182091 76 - 5137665 CAGCAA---------------------------------------------------------TCTCCA-G-TTTTCCTCCTAAATGTCATCTTTCAAATACAAATGTTGTATG----------------TTTTTATACAGT-ATAAATATT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122896944 76 - 135778131 CAGCAA---------------------------------------------------------TCTCCA-G-TTTTCCTCCTAAATGTCATCTTTCAAATACAAATGTTGTATG----------------TTTTTATACAGT-ATAAATATT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2001790 76 + 2427316 CAGCAA---------------------------------------------------------CCTCCA-A-TTTTCCTCCTAAATGTCATCTTTCAAATACAAATGTTGTATG----------------TTTTTATACAGT-ATAAATATT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1292681 76 + 1448899 CAGCAA---------------------------------------------------------TCTCCA-G-TTTTCCTCCTAAATGTCATCTTTCAAATACAAATGTTGTATG----------------TTTTTATACAGT-ATAAATATT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53014318 76 - 190850796 CAGCAA---------------------------------------------------------TCTCCA-A-TTTTCTTCCTAAATGTCATCTTTTGAATACAAATATTGTATG----------------TATTTATATAGT-AAAAATATT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8174845 93 - 15139346 CAGCAA---------------------------------------------------------TCTCCA-A-TTTTCCTCCTAAATGTCATCTTTTCAATACAAATATTGTATATATTTTTACTGTATATTATTTATACAGTAAAAAATATT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6958524 77 - 7304997 CAGCAA---------------------------------------------------------TCTCCA-A-TTTTCCTCCTAAATGTCATCTTTTAAATACAAATATTGTGTA----------------TATTTATACAGTAAAAAATATT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9376566 77 - 11631747 CAGCAA---------------------------------------------------------TCTCCA-A-TTTTCCTCCTAAATGTCATCTTTTGAATACAAATATTGTGTA----------------TATTTATACAGTAAAAAATATT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1785130 77 + 3286835 TGGCAG---------------------------------------------------------TTTCCA-ATTTTTCCTCCTGAATGCCATCTTTCTAATAAAAATATTTTATG----------------TATTTATATGAC-ATAAATATT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1872953 70 + 4188776 TGGCAG---------------------------------------------------------TCTCCA-A-TTTTCCTCCTAAATGCCATCTTTCTAATAAAAGTATTTTATG----------------TAGTTCTATAAC-ATA------ i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8611549 58 + 8790067 tGACAG---------------------------------------------------------TCCTAATATTATTCCTCCTAAATGTTATCTTGCTAATAAAAATATTTC------------------------------C-AAA------ i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76413895 60 + 151834684 ----------------------------------------------------------------------T-TTTTTATCTTAAA----ATGTTTCTAACAAACATATTTGACA----------------TAATTACAGAAC-ATACATATT i mm10.chr5 C 0 C 0 s canFam3.chr13 48000194 127 + 63241923 cagcaaccctctgtttcctatagttaagagtctttcatggtGAAAAATAACAATTTAAATGAATCTTCA-A-TTTTTATCCTAAATTTCATCTTTCTAACA------TTTCATG----------------TATTTATAGAAT-AGAAATATT i canFam3.chr13 I 147 C 0 e dasNov3.JH568349 4093230 904 - 5279953 I a score=248001.000000 s hg38.chr4_KI270787v1_alt 58634 18 + 111943 TTCAA-ATAAAGGGTGGTT s panTro5.chr4 119623315 18 - 194502333 TTCAA-ATGAAGGGTGGTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036731 18 - 195804263 TTCAA-ATGAAGGGTGGTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4467984 18 - 17550833 TTCAA-ATAAAGGGTGGTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69340878 18 - 118206036 TTCAA-ATAAAGGGTGGTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544735 18 - 190429646 TTTGA-ATAAAGGGTGGTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110712872 18 - 189454096 TTTGA-ATAAAGGGTGGTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13280901 18 + 26754465 TTTGA-ATAAAGGGTGGTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4182167 18 - 5137665 TTTGA-ATAAAGGGTGGTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122897020 18 - 135778131 TTTGA-ATAAAGGGTGGTC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2001866 18 + 2427316 TTTGA-ATAAAGGGTGGTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1292757 18 + 1448899 TTTGA-ATAAAGGTTGGTC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53014394 18 - 190850796 TTCAA-ATAAAGGGTGGTC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8174938 18 - 15139346 TTCAA-ATAAAGGGTGGTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6958601 18 - 7304997 TTCAA-ATAAAGGGTGGTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9376643 18 - 11631747 TTCAA-ATAAAGGGTGGTC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1785207 18 + 3286835 TTAAA-CTAAGGGGTGGTC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1873023 11 + 4188776 --------AAAGGGTGGTC i proCoq1.NW_012140747v1 C 0 I 40 s otoGar3.GL873602 8611607 12 + 8790067 -------TAGAGGGTGGTC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76413955 19 + 151834684 TTAAATATAAAGGCTAGTT i mm10.chr5 C 0 C 0 s canFam3.chr13 48000321 18 + 63241923 TTCAA-ATAAGGAGTGATC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4094134 18 - 5279953 TTGAA-ATAAAGGCTATTC i dasNov3.JH568349 I 904 C 0 a score=692583.000000 s hg38.chr4_KI270787v1_alt 58652 62 + 111943 GGCCATGTATCTTTTCCACCTTCGATAATAGG------TGGAAGGT-----------GT-AGTAAATGTAATTTTTAAAA s panTro5.chr4 119623333 62 - 194502333 GGCCATGTATCTTTTCCACCTTCGATAATAGG------TGGAAGGT-----------GC-AGTAAATGTAATTTTTAAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036749 62 - 195804263 GGCCATGTATCTTTTCCACCTTCGATAATAGG------TGGAAGGT-----------GC-AGTAAATGTAATTTTTAAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468002 62 - 17550833 GGCCATGTATCTTTTCCACCTTCGATAATAGG------TGGAAGGT-----------GT-AGGAAATGTAATTTTTAAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69340896 62 - 118206036 GGCCATGTATCTTTTCCACCTTCAATAATAGG------TGGAAGGT-----------CT-AGGAAATGTAATTTTTAAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544753 62 - 190429646 AGCCATGTATCTTTTCCACCTTCAATAATAGG------TGGAAGGT-----------CT-AGGAAATGTAATTTTTAAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110712890 62 - 189454096 AGCCATGTATCTTTTCCACCTTCAATAATAGG------TGGAAGGT-----------CT-AGGAAATGTAATTTTTAAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13280919 62 + 26754465 AGCCATGTATCTTTTCCACCTTCAATAATAGG------TGGAAGGT-----------CT-AGGAAATGTAATTTTTAAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4182185 62 - 5137665 AGCCATGTATCTTTTCCACCTTCAATAATAGG------TGGAAGGT-----------CT-AGGAAATGTAATTTTTAAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122897038 62 - 135778131 AGCCATGTATCTTTTCCACCTTCAATAATAGG------TGGAAGGT-----------CT-AGGAAATGTAATTTTTAAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2001884 62 + 2427316 AGCCATGTATCTTTTCCACCTTCAATAATAGG------TGGAAGGT-----------CT-AGGAAATGTAATTTTTAAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1292775 62 + 1448899 AGCCATGTATCTTTTCCACCTTCGATAATAGG------TGGAAGGT-----------CT-AGGAAATGTAATTTTTAAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53014412 55 - 190850796 AGCCATGTATCTTTTCCACCTTTGA-------------TGGAAGGT-----------CT-AGAAAATGCAATTTTAAAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8174956 55 - 15139346 AGCCATGTATCTTTTCCACCTTTGA-------------TGGAAGGT-----------CT-AGGAAACGTAATTTTAAAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6958619 55 - 7304997 AGCCATGTATCTTTTCCACCTTTGA-------------TGGAAGGT-----------CT-AGGAAATGTAATTTTAAAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9376661 55 - 11631747 AGCCATGTATCTTTTCCACCTTTGA-------------TGGAAGGT-----------CT-AGGAAATGTAATTTTAAAAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1785225 65 + 3286835 AGTCTTGTATCCTTTCTACCTTTGATAATAGCCAACACTGGAAGGT-----------CCAAGGCAATGTAATTTCT---- i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8611619 62 + 8790067 -ACCATTTATCC-CTCTGCCTTTGACAACAGGGAACACTGGAAGGT-----------CC-AGGCAAAGTAATTTTT---- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76413974 72 + 151834684 TGTCATATACTGTTTTCCAGTTTGATAATAGT------TGATAGGTTGAGTATTATCCC-AGGTGACATATTCTTCAAA- i mm10.chr5 C 0 C 0 s canFam3.chr13 48000339 64 + 63241923 AGACATGTGTCATTTTCAGTTTTGATGTATGTCAACACTGGAAGGT-----------CC-AGGTGACATACATTTT---- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4094152 62 - 5279953 AGCCATGTATACTT-----GTTTGATAATACACAATATTGGAAAGT-----------CC-ATGCAATGTAGTTTTAAAA- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1873034 40 + 4188776 I a score=1523323.000000 s hg38.chr4_KI270787v1_alt 58714 82 + 111943 TTAAAGACTGAAGTTTATTTGGTATTTCAGAGCACCACCTGGTGGATTAATTAACGATAACAGTCCAAAACAAAAATGAATC s panTro5.chr4 119623395 82 - 194502333 TTAAAGACTGAAGTTCATTTGGTATTTCAGAGCACCACCTGGTGGATTAATTAACAATAACAGTCCAAAACAAAAATGAATC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036811 82 - 195804263 TTAAAGACTGAAGTTCATTTGGTATTTCAGAGCACCACCTGGTGGATTAATTAACAATAACAGTCCAAAACAAAAATGAATC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468064 81 - 17550833 TTAAAGACTGAAGTTTATTTGGTATTT-AGAGCACCACCTGGTGGATTAATTAACAATAACAGTCCAAAACAAAAATGAATC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69340958 82 - 118206036 TTAAAGACTGAAGTTTATTTGGTATTTCAGAGCACCACCTGGTGGATTAATTAACAATAACAGTCCAAAACAAAAATGAATC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544815 82 - 190429646 TTAAAGACTGAAGTTTATTTGGTATTTCAGAGCACCACCTGGTGGATTAATTAACAATAACAGTCCAAAACAAAAATGAATC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110712952 82 - 189454096 TTAAAGACTGAAGTTTATTTGGTATTTCAGAGCACCACCTGGTGGATTAATTAACAATAACAGTCCAAAACAAAAATGAATC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13280981 82 + 26754465 TTAAAGACTGAAGTTTATTTGGTATTTCAGAGCACCACCTGGTGGATTAATTAACAATAACAGTCCAAAACAAAAATGAATC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4182247 82 - 5137665 TTAAAGACTGAAGTTTATTTGGTATTTCAGAGCACCACCTGGTGGATTAATTAACAATAACAGTCCAAAACAAAAATGAATC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122897100 82 - 135778131 TTAAAGACTGAAGTTTATTTGGTATTTCAGAGCACCACCTGGTGGATTAATTAACAATAACAGTCCAAAACAAAAATGAATC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2001946 82 + 2427316 TTAAAGACTGAAGTTTATTTGGTATTTCAGAGCACCACCTGGTGGATTAATTAACAATAACAGTCCAAAACAAAAATGAATC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1292837 82 + 1448899 TTAAAGACTGAAGTTTATTTGGTATTTCAGAGCACCACCTGGTGGATTAATTAACAATAACAGTGCAAAACAAAAATGAATC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53014467 82 - 190850796 TTAAAGACTGAAGTTTATTTGGTATTTCAGAGCACCATCTGGTGGATTAATTAACAATAACAGTCCAAAACAAAAACGAATC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8175011 82 - 15139346 TTAAAGACCAAAGTTTATTTGGTATTTCAGAGCACCATCTGGTGGATTAATTAACAATAACAATCCAAAACAAAAACGAATC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6958674 82 - 7304997 TTAAAGACCGAAGTTTATTTGGTATTTCAGAGCACCATCTGGTGGATTAATTAACAATAACAGTCCAAAACAAAAACGAATC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9376716 82 - 11631747 TTAAAGACCAAAGTTTATTTGGTATTTCAGAGCACCATCTGGTGGATTAATTAACAATAACAGTCCAAAACAAAAACGAATC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1785290 81 + 3286835 -TTAAAACGAAAGTTTATTTGGTATTTCAGAGCACCACCTGGTGGATTAATTAACAATAACAGTACAGAGTGAAAGCGAATC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1873074 82 + 4188776 TTAAAGACTAAAGTTTATTTGGTATTTCAGAGCACCACCTGGTGGATTAATTAACAATAACAGTAAAGCGTGAAAGTAAATC i proCoq1.NW_012140747v1 I 40 C 0 s otoGar3.GL873602 8611681 81 + 8790067 -TAAAGACTGAAGTCTATTTGTTGTTTCACAGCACCACCTGGTGGATTAATTAACAATAGCCGTACAGAGTGAAAGCCAATC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76414046 79 + 151834684 -TTAGGACTGAAGTCAATTTGG--TTTCAGAGCACCACCTGGTGGATTaattaccaacaaccatccagaaataaagtgaatc i mm10.chr5 C 0 I 5012 s canFam3.chr13 48000403 81 + 63241923 -TAAGGACTGAAGTTTATTTGGTATTTCAGAGCACCACCTGGTGGATTAATTAACAATAACAGTCCAAAACAAAAGTGAATC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4094214 82 - 5279953 TTAAGGATTGAAGTTTATTTAGCATTTCATAGCACCACCTGGTGGAATGATTAACAATAACAGTCCAGAACAAAAGTGCATT i dasNov3.JH568349 C 0 C 0 a score=448687.000000 s hg38.chr4_KI270787v1_alt 58796 36 + 111943 TTAAAACTGGCTCCGAAATAAGAAGTATTGGAACCC s panTro5.chr4 119623477 36 - 194502333 TTAAAACTGGCTCCGAAATAAGAAGTATTGGAACCC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036893 36 - 195804263 TTAAAACTGGCTCCGAAATAAGAAGTATTGGAACCC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468145 36 - 17550833 TTAAAACTGGCTCCGAAATAAGAAGTATTGGGACCC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69341040 35 - 118206036 TTAAAACTGGCTCTGAAATAAGAAGTA-TGGGACCC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544897 36 - 190429646 TTAAAACTGGCTCTGAAATAACAAGTATTGGGACCC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110713034 36 - 189454096 TTAAAACTGGCTCTGAAATAACAAGTATTGGGACCC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13281063 36 + 26754465 TTAAAACTGGCTCTGAAATAACAAGTATTGGGACCC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4182329 36 - 5137665 TTAAAACTGGCTCTGAAATAACAAGTATTGGGACCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122897182 36 - 135778131 TTAAAACTGGCTCTGAAATAACAAGTATTGGGACCC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2002028 36 + 2427316 TTAAAACTGGCTCTGAAATAACAAGTATTGGGACCC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1292919 36 + 1448899 TTAAAACTGGCTCTGAAATAACAAGTATTGGGACCC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53014549 36 - 190850796 TTAAAACTGGCTCTGAAATAAGAAGTACTGGGACCC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8175093 33 - 15139346 TTAAAACTGGCTCTGAAAT---AAGTATTGAGACCC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6958756 33 - 7304997 TTAAAACTGGCTCTGAAAT---AAGTATTGGGATCC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9376798 33 - 11631747 TTAAAACTGGCTCTGAAAT---AAGTATTGAGATCC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1785371 36 + 3286835 TTAAAACCGGCTCCGAAATAATGGGTATTGGAACCC i micMur3.chrUn_NW_017968520v1 C 0 I 131 s proCoq1.NW_012140747v1 1873156 36 + 4188776 TTAAAACTGGCTCTGAAACTATGGGTATTGGGACCC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8611762 24 + 8790067 CTAAGACCAACTCTGAAACAATAC------------ i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48000484 31 + 63241923 ---AAAATGGCTCTGAAACAAAAGGTAATGGAAA-- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4094296 32 - 5279953 TTGAA--TGACT--GACACAATTGGTGTTGGAAACC i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76414125 5012 + 151834684 I a score=13365.000000 s hg38.chr4_KI270787v1_alt 58832 1 + 111943 T s panTro5.chr4 119623513 1 - 194502333 T i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036929 1 - 195804263 T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468181 1 - 17550833 T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69341075 1 - 118206036 T i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544933 1 - 190429646 T i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110713070 1 - 189454096 T i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13281099 1 + 26754465 T i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4182365 1 - 5137665 T i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122897218 1 - 135778131 T i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2002064 1 + 2427316 T i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1292955 1 + 1448899 T i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53014585 1 - 190850796 T i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8175126 1 - 15139346 T i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6958789 1 - 7304997 T i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9376831 1 - 11631747 T i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8611786 1 + 8790067 C i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48000515 1 + 63241923 T i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4094328 1 - 5279953 T i dasNov3.JH568349 C 0 I 8 e proCoq1.NW_012140747v1 1873192 0 + 4188776 C e micMur3.chrUn_NW_017968520v1 1785407 131 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I a score=1398887.000000 s hg38.chr4_KI270787v1_alt 58833 129 + 111943 TATGAGGctcacttcttcta--ttcttttccctctcctttag---ttctcttttt-ccccttctctctctctttctctcactctTTTCATTTCCTACCTAGTCATTTCCTCCCTCCTATTTTGTTTATACCTTAG s panTro5.chr4 119623514 129 - 194502333 TATGAGGctcacttcttcta--ttcttttccctctcctttag---ctctcttttt-ccccttctctctctctttctctcactctTTTCATTTCCTACCTAGTCATTTCCTCCCTCCTATTTTGTTTATACCTTAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121036930 129 - 195804263 TATGAGGctcacttcttcta--ttcttttccctctcctttag---ttctcttttt-ccccttctctctctctttctctcactctTTTCATTTCCTACCTAGTCATTTCCTCCCTCCTATTTTGTTTATACCTTAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468182 128 - 17550833 TATGAGGctcacttcttcta--ttcttttccctctcctttag---ttctc-tttt-ccccttctctctctctttctctcactctTTTCATTTCCTACCTAGTCATTTCCTCCCTCCTATTTTGTTTATACCTTAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69341076 129 - 118206036 TATGAGGCCCACTtcttcta--ttcttttccctctcctttag---ttctcttttt-ccccttctctctctctttctctcactctTTTCATTTCCTACCTAGTCATTTCCTCCCTCCTATTTTGTTTATACCTTAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111544934 130 - 190429646 TATGAGGCTCACCCCTTCTA--TTCTTTTCACTCTCCTTTAG---TtctctttttcccccttctctctctctttctctcactctTGTCATTTCCTACCTAGTCATTTCCTCCCTCTTATTTTGTTTATACCTTAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110713071 130 - 189454096 TATGAGGCTCACCCCTTCTA--TTCTTTTCACTCTCCTTTAG---TtctctttttcccccttctctctctctttctctcactctTGTCATTTCCTACCTAGTCATTTCCTCCCTCCTATTTTGTTTATACCTTAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13281100 130 + 26754465 TATGAGGCTCACCCCTTCTA--TTCTTTTCACTCTCCTTTAG---TtctctttttcccccttctctctctctttctctcactctTGTCATTTCCTACCTAGTCATTTCCTCCCTCCTATTTTGTTTATACCTTAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4182366 130 - 5137665 TATGAGGCTCACCCCTTCTA--TTCTTTTCCCTCTCCTTTAG---TtctctttttcccccttctctctctctttctctcactctTGTCATTTCCTACCTAGTCATTTCCTCCCTCCTATTTTGTTTATACCTTAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122897219 130 - 135778131 TATGAGGCTCACCCCTTCTA--TTCTTTTTCCTCTCCTTTAG---TTCTCTTTTTTCCCCTtctctctctctttctctcactctTGTCATTTCCTACCTAGTCATTTCCTCCCTCCTATTTTGTTTATACCTTAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2002065 130 + 2427316 TATGAGGCTCACCCCTTCTA--TTCTTTTCCCTCTCCTTTAG---TtctctttttcccccttctctctctctttctctcactctTGTCATTTCCTACCTAGTCATTTCCTCCCTCCTATTTTGTTTATACCTTAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1292956 130 + 1448899 TATGAGGCTCACCCATTCTA--Ttcttctccctctcctttag---ttctcttttttccccttctctctctctttctctcactctcGTCATTTCCTACCTAGTCATTTCCTCCCTCCTATTTTGTTTATACCTTAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53014586 133 - 190850796 CATGAAGCTCACcctttcta--ttcttttcctttccctttagttctcttttttctcccttttctctccctctttctctcactcttttcacttcctacctagtcatttcctccctcctgttttgtttATACCTTAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8175127 127 - 15139346 CATGAAGCTCACCCCTTCTA--Gtcttttcctttgcctt------tctttttttccccttctctctccctctctctctcactcttttcacttcctacctactcattgcctccctccTGTTTTGTTTATACCTTAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6958790 126 - 7304997 CATGAAGCTCACCCCTtcta--ttcttttcctttgccttt-----cttttttttccccttttctctccctctttctctcactc--ttcacttcctACCTAGTCATTTCCTCCCTCCTGTTTTGTTTATACCTTAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9376832 125 - 11631747 CATGAAGCTCAACCCttcta--ttcttttccttttcctt------tcttttttttcccttctctctccctctttctctcactc--ttcgcttcctACCTAGTCATTTCCTCCCTCCTGTTTTGTTTATACCTTAA i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1873192 128 + 4188776 TCTGATGCTCATTCCTTCTCTTTTCTTTTCCCTGTCGTTTAG---GGCTTGTT---CCTTCTCCACCACCCCTTCTCTCCTTCTTTTCATTTCCTACCTAACCACTCCTTCTCTACTGTTCTGTTTACACCTTA- i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8611787 123 + 8790067 TATGATGCTCAttccttctcttttcttctccctctcctttag---gtctcctt---ctttctcta-tacccct----ccccacttttcatttcctacccagcccttccctcctttccattcTGTTTACACCTGA- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48000516 101 + 63241923 TATGATGCTCATCCCTT-----TTCTTTT-----TACTTCAG---CAATCATT-----------CCTTCTTTTCATCTCCTTCTTTTCGTTTCCTATCCAGTC-TCTCCTGCCTC------TGTTT--ACTTTA- i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1785407 131 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=208899.000000 s hg38.chr4_KI270787v1_alt 58962 15 + 111943 AACTTGTCCACATCA s panTro5.chr4 119623643 15 - 194502333 AACTTGTCCACATCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121037059 15 - 195804263 AACTTGTCCACATCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468310 15 - 17550833 AGCTTGTCCACATCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69341205 15 - 118206036 AGCTTGTCCACATCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111545064 15 - 190429646 AGCTTGTCCATATCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110713201 15 - 189454096 AGCTTGTCCATATCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13281230 15 + 26754465 AGCTTGTCCATATCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4182496 15 - 5137665 AGCTTGTCCATATCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122897349 15 - 135778131 AGCTTGTCCATATCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2002195 15 + 2427316 AGCTTGTCCATATCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1293086 15 + 1448899 AGCTTGTCCATATCG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53014719 15 - 190850796 ATTTTGTCTACATCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8175254 15 - 15139346 AGCTTGTCCACATCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6958916 15 - 7304997 AGCTTGTCCACATCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9376957 15 - 11631747 AGCTCGTCCACATCA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1785538 15 + 3286835 AGCTTGTCTGTGCCA i micMur3.chrUn_NW_017968520v1 I 131 C 0 s proCoq1.NW_012140747v1 1873320 15 + 4188776 AGCTCGTCCATGCCG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8611910 15 + 8790067 AGCTTGTCCATACAA i otoGar3.GL873602 C 0 I 173 s canFam3.chr13 48000617 15 + 63241923 AGTTTGTCCATGCCA i canFam3.chr13 C 0 C 0 e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=587436.000000 s hg38.chr4_KI270787v1_alt 58977 45 + 111943 TCTACTGGTATTGATGAGTCCTCAGAGTGGGTAAGGA----GCTCACTT s panTro5.chr4 119623658 45 - 194502333 TCTACTGGTATTGATGAGTCCTCAGAGTGGGTAAGGA----GCTCACTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121037074 45 - 195804263 TCTACTGGTATTGATGAGTCCTCAGAGTGGGTAAGGA----GCTCACTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468325 45 - 17550833 TCTACTGGTATTGATGAGTCCTCAGAGTGGGTAAGGA----GCTCACTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69341220 45 - 118206036 TCTACTGGTATTGATGAGTCCTCAGAGTGGGTAAGGA----GCTCACTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111545079 45 - 190429646 TCTACTGGTATTGAAGAGTCCTCAGAGTGGGTAAGGA----ACTTACTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110713216 45 - 189454096 TCTACTGGTATTGATGAGTCCTCAGAGTGGGTAAGGA----ACTTACTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13281245 45 + 26754465 TCTACTGGTATTGATGAGTCCTCAGAGCGGGTAAGGA----ACTTACTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4182511 45 - 5137665 TCTACTGGTATTGAAGAGTCCTCAGAGTGGGTAAGGA----ACTTACTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122897364 45 - 135778131 TCTACTGGTATTGATGAGTCCTTAGAGTGGGTAAGGA----ACTTACTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2002210 41 + 2427316 TCTACTGGTATTGAAGAGTCCTCAGAGTGGGTAAGGA--------ACTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1293101 45 + 1448899 TCTACTGGTATTGATGAGTCCTTAGAGTGGGTAAGGA----ACTTACTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53014734 45 - 190850796 TCTACTGGTATTGATGAGTCCTCGGAGTGGCAAAGGA----GCTCACTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8175269 45 - 15139346 TCTACTGGTATTAATGAGTCCTCAGAGTGGCCAAGGA----GCTCACTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6958931 45 - 7304997 TCTACTGGTATTGATGAGTCCTCAGAGTGGCAAAGGA----GCTCACTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9376972 45 - 11631747 TCTGCTGGTATTGATGAGTCCTCAGAGTGGCAAAGGA----GCTCACTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1785553 45 + 3286835 TCTGTCAGTATTGCTGAGTCCTCGGAGTGGCTAAGCA----ACTTGCTT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1873335 45 + 4188776 TCTATCAGTATGGCTGAATACTCACAGTGGCTAAGGA----ACTTGCTT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8612098 45 + 8790067 TCTAACAATATTACTGAATCCTTATAGTGGCTACAAA----ACTTGCTT i otoGar3.GL873602 I 173 C 0 s canFam3.chr13 48000632 49 + 63241923 CCTAGATGTATTGCTGAGTCTTTGGAGGAAATAAGAAGTATGCTTACTT i canFam3.chr13 C 0 I 194 e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=3640298.000000 s hg38.chr4_KI270787v1_alt 59022 264 + 111943 ACTTATGCTTGGTTTAATAAG-ATCTACAAGGTCTCTAAATTTCAAGTAGAAAGGCAAATATA----GAGTTACAAAATTC-AGTTGTCTTTCAGAGACTGAATCTTTTTACCTAAGGATGGGCCTGTATTTCCCCAAGGTGGAGTT----tttgtttgtttgtatgtctgttGTACACAC-AACATTCATTCCAATAGAACCCCTCTTTCCTATTTTATTTGTAAATAATGCCTAAAATTGACTAATTTTCAGTGT----TTTTGCCTGTTGTTCTGA s panTro5.chr4 119623703 264 - 194502333 ACTTATGCTTGGTTTAATAAG-ATCTACAAGGTCTCTAAATTTCAAGTAGAAAGGCAAATATA----GAGTTGCAAAATTC-AGTTGTCTTTCAGAGACTGAATCTTTTTACCTAGGGATGGGCCTGTATTTCCCCAAGGTGGAGTT----tttgtttgtttgtatgtctgttGTACACAC-AACATTCATTCCAATAGAACCCCTCTTTCCTATTTTATTTGTAAATAATGCCTAAAATTGACTAATTTTCAGTGT----TTTTGCCTGTTGTTCTGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121037119 264 - 195804263 ACTTATGCTTGGTTTAATAAG-ATCTACAAGGTCTCTAAATTTCAAGTAGAAAGGCAAATATA----GAGTTGCAAAATTC-AGTTGTCTTTCAGAGACTGAATCTTTTTACCTAGGGATGGGCCTGTATTTCCCCAAGGTGGAGTT----tttgtttgtttgtatgtctgttGTACACAC-AACATTCATTCCAATAGAACCCCTCTTTCCTATTTTATTTGTAAATAATGCCTAAAATTGACTAATTTTCAGTGT----TTTTGCCTGTTGTTCTGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468370 264 - 17550833 ACTTATGCTTGGTTTAATAAG-ATCTACAAGGTCTCTAAATTTCAACCAGAAAGGCAAATATA----GAGTTGCAAAATTC-AGTTGTCTTTCAGAGACTGAATCTTTTTACCTAAGGATGGGCCTGTATTTCCCCAAGGTGGAGTT----tttgtttgtttgtatgtctgttGTACACAC-AACATTCATTCCAATAGAACCCCTCTTTCCTATTTTATTTGTAAATAATGCCTAAAATTGACTAATTTTCAGTGT----TTTTGCCTGTTGTTCTGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69341265 263 - 118206036 ATTTATGCCTGGTTTAATAAG-ATCTACAAGGTCTCTAAATTTCAAGTAGAAAGGCAAATATC----GAGTTACAAAATTT-AGTTGTCTTTCAGACACTGAATCTTTCTACCTAGGGATGGGCCTGTATTTCCCCAAGGTAGAGTT----TTCGTTTGTTTGTATGTCTGTTGTACACA--AACATTCATTCCAATAGAACCCCTCTTTCCTATTTTATTGGTAAATAATGCCTAAAGTTGACTAATTTTCAGTGT----TTTTGCCTGTTATTCTGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111545124 268 - 190429646 ATTTATGCCTGCTTTAATAAA-ATCTACAGGGTCTCTAAATTTCAAGTAGAAAGGCAAATATA----AAGTTGTGAAATTC-AGTTGTCTTTCAGAGACTGAATCTTTCTACCTAGGAATCAGCCTGTATTTCCCCAAGGTGGAGTTTTTATTTGTTTGTTTGTATATCTGTTGTACGCACAAACATTCATTCCAATAGAATCCCTCTTTCCTATTTTATTTGTAAATAATGCCTAAAGTTGACTAATTTTC-GTGT----TTTGGCCTGTTGTTCTGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110713261 268 - 189454096 ATTTATGCCTGCTTTAATAAA-ATCTACAGGGTCTCTAAATTTCAAGTAGAAAGGCAAATATA----AAGTTGTGAAATTC-AGTTGTCTTTCAGAGACTGAATCTTTCTACCTAGGAATCAGCCTGTATTTCCCCAAGGTGGAGTTTTTATTTGTTTGTTTGTATATCTGTTGTACGCACAAACATTCATTCCAATAGAATCCCTCTTTCCTATTTTATTTGTAAATAATGCCTAAAGTTGACTAATTTTT-GTGT----TTTGGCCTGTTGTTCTGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13281290 268 + 26754465 ATTTATGCCTGCTTTAATAAA-ATCTACAGGGTCTCTAAATTTCAAGTAGAAAGGCAAATATA----AAGTTGTGAAATTC-AGTTGTCTTTCAGAGACTGAATCTTTCTACCTAGGAATCAGCCTGTATTTCCCCAAGGTGGAGTTTTTATTTGTTTGTTTGTATATCTGTTGTACGCACAAACATTCATTCCAATAGAATCCCTCTTTCCTATTTTATTTGTAAATAATGCCTAAAGTTGACTAATTTTC-GTGT----TTTGGCCTGTTGTTCTGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4182556 268 - 5137665 ATTTATGCCTGCTTTAATAAA-ATCTACAGGGTCTCTAAATTTCAAGTAGAAAGGCAAATATA----AAGTTGTGAAATTC-AGTTGTCTTTCAGAGACTGAATCTTTCTACCTAGGAATCGGCCTGTATTTCCCCAAGGTGGAGTTTTTATTTGTTTGTTTGTATATCTGTTGTACACACAAACATTCATTCCAATAGAATCCCTCTTTCCTATTTTATTTGCAAATAATGCCTAAAGTTGACTAATTTTC-GTGT----TTTGGCCTGTTGTTCTGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122897409 268 - 135778131 ACTTATGCCTGCTTTAATAAA-ATCTACAGGGTCTCTAAATTTCAAGTAGAAAGGCAAATATA----AAGTTGTGAAATTC-AGTTGTCTTTCAGAGACTGAATCTTTCTACCTAGGAATCGGCCTGTATTTCCCCAAGGTGGAGTTTTTATTTGTTAGTTTGTGTATCTGTTGTACACACAAACATTCATTCCAATAGAATCCCTCTTTCCTATTTTATTTGTAAATAATGCCTAAAGTTGACTAAATTTC-GTGT----TTTCGCCTGTTGTTCTGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2002251 268 + 2427316 ATTTATGCCTGCTTTAATAAA-ATCTATAGGGTCTCTAAATTTCAAGTAGAAAGGCAAATATA----AAGTTGTGAAATTC-AGTTGTCTTTCAGAGACTGAATCTTTCTACCTAGGAATCGGCCTGTATTTCCCCAAGGTGGAGTTTTTATTTGTTTGTTTGTATATCTGTTGTACACACAAACATTCATTCCAATAGAATCCCTCTTTTCTATTTTATTTGTAAATAATGCCTAAAGTTGACCAATTCTC-GTGT----TTTGGCCTGTTGTTCTGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1293146 268 + 1448899 ACTTATGCCTGCTTTAATAAA-ATCTACAGGGTCTCTAAATTTCAAGTAGAAAGGCAAATATA----AAGTTGTGAAATTC-AGTTGTCTTTCAGAGACTGAATCTTTCTACCTAGGAATCGGCCTGTATTTCCCCAAGGTGGAGTTtttatttgtttgtttgtatgtctgttGTACACACAAACATTCATTCCAATAGAATCCCTCTTTCCTATTTTATTTGTAAATAATGCCTAAAGTTGACTAATTTTC-ATGT----TTTTGCCTGTTGTTCTGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53014779 265 - 190850796 ATTTTGGCCTGGTTTAATAAA-ATCTAGAAGGTCTCTAAATTTCAAGTAGAAAGGCAAACTTA----AAGTTGCAAAATTC-AGTTGTCTTGCATAGACTGAATCTTTCTACCCAGGGATGGGCCTGTATTTTCCCAAGGTGGAGTT----TTTAATTATTTTTATGCCTGCTGTACACACAAACATTCATTCTAATAGAACCCCTCTTTCCTATTTTATTTGTAAATAATGCCTAAAGTTGATGAATTTTCAGTGT----TTTTGCCTGTTGTTCTGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8175314 262 - 15139346 ACTTATGCCTGGTTTAATAAA-ATCTAGAAGGTCTCTAAATTTCAAGTAGAAAGGCAAACTTA----AAGTTGCAAAATTC-AGTTGTCTTGCAGAGACTGAATCTTTCTACCCAGGGATGGGCCTATATTTTCCCAACGTGGACTT----TTTAATTGTTTGTATGTCTGTTGTACATACAAACATTCATTCTAATAGAATCCCTCTTTCCTATTTTATTTGAAAATAATGCCTAAAGTTGACGACTTTTCAGTG-------TTGCCTGTTGTTCTGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6958976 265 - 7304997 ACTTATGCCTGGTTTAATGAA-ATCCAGAAGGTCTCTAAATTTCAAGTAGAAAGGCAAACTTA----AAGTTGCAAAATTC-AGTTGTCTTGCAGAGACTGAATCTTTCTACCCAGGGATGGGCCTATGTTTTCCCAACGTGGAGTT----TTTAATTGTTTGTATGTCTGTTGTCCATACAAACATTCATTCTAATAGAACCCCTCTTTCCTATTTTATTTGAAAATAATGCCTAAAGTTGATGAATTTTCAGTGT----TTTTGCCTGTTGTTCTGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9377017 265 - 11631747 ACTTATGCCTGGTTTAATAAA-ATCTAGAAGGTCTCTAAATTTCAAGTAGAAAGGCAAACTTA----AAGTTGCAAAATTC-AGTTGTCTTGCAGAGACTGAAACTTTCTACCCAGGGATGGGCCTATATTTTCCCAACGTGGAGTT----TTTAATTGTTTTTATGTCTGTTGTACACGCAAACATTCACTCTAATAGAACCCTTATTTCCTATTTTATTTGAAAATAATGCCTAAAGTTGATGAATTTGCAGTGT----TTTTGCCTGTTGTTCTGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1785598 265 + 3286835 ACTTATGCCTGATTTAGTAAACATCTAAGAGGTCTCTAAATTTCAAGTAGAAAAGCAAGTATATTTGAAGTTGCAAAATTC-AGTTATCTTCCAGAGATTGAATCTTTCTACACAGGGATGGGCTTGTGTTTCCCCAA-GTGGAGTT--------TTCATTTGTGTGTCTGTTTTACACATAAACATTCATTCTAATAGAACCTCTCTTTCCTATTTGATTTGTAAATAATGGCTAAAGTTGACTGACTTTCAGTGT----GTTAGCCTATTGTTCTGA i micMur3.chrUn_NW_017968520v1 C 0 I 224 s proCoq1.NW_012140747v1 1873380 265 + 4188776 ACTTATGCCTGATTTAGTAAACATCTAAGAGGTCTCTAAATTTCAAGTGGAAAGGCAAATATATTTGAAGTTGCAAAATTC-AGTTATCTTCCAGAGATTGACTCTTTCTACCCAGGGATGGGCTTGTGTTTCCCCAAGGCGGAGTT--------TTTATTTGTATGTCTGTTTTACACATAAACATTCATTCTAATGGAACCCCTCTTTCCTATTTTATTTGTAAATAATGGCT-AAGTTGACTAATTTTCAGTGT----GTTAGCTTATTGTTCTGA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8612143 266 + 8790067 GATTATGCCTGATTTAGTAAAAATCTAAGAGGTCTCCAGATTTCAAGTAGAAAGGCAAATATTTTTGAAGTTGCAAGATTCAAGTTATCTTCCAGAGACTGAATCTTTCTACCCAAGGATGGGCTTGTGTTTCCCCAAGGTGGAGTT--------TTTATTTGTATGTCTGTTTTACACGTAAATGTTCATTCCAATAGAACCTCTCTTTCCTATTTTATTTGTAAATAATGTATCAAGTTGACTAA-TTTCAGTGT----GTTAGCCTGTTGTTCTGA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48000875 271 + 63241923 ACTTATGCCTGATTTAATAAA-ATCTAAGATGTTTCTAAAATTCAAGTAGAAAAGCAAATTTATTTGAAGTTGCAAAACTG-GATTTTCCTCCAGATACCAACTCTTTCTGCCCAGGGATGGGTTTGTGTTTCCCCAAGGAGGGGTT----TT--TTTTTTTGTTTGATTGATTTAGACAGAAGCAATCATTCTAATGAAACCCCTCTTTCATAATTTATGTGTACATAATGACTAAAGTTGACTCATTTACAGTGTTTTATTTAGCCTAATGTTCTGA i canFam3.chr13 I 194 C 0 e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=1361085.000000 s hg38.chr4_KI270787v1_alt 59286 112 + 111943 GTAAGCTACCCAATAGCTTTTGA--AAGAGAGGCAAGCTGGTTTACTGCAACCTTCTTAAAGGTATCTGATCTCACATGACCCAcatgtaatatgaatgaatggaacaggaaag s panTro5.chr4 119623967 112 - 194502333 GTAAGCTGCCCAATAGCTTTTGA--CAGAGAGGCAACCTGGTTTACTGCAACCTTCTTAAAGGTGTCTGATCTCACATGACCCACATGTAATATGAATGAATGGAACAGGAAAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121037383 112 - 195804263 GTAAGCTGCCCAATAGCTTTTGA--CAGAGAGGCAACCTGGTTTACTGCAACCTTCTTAAAGGTATCTGATCTCACATGACCCACATGTAATATGAATGAATGGAACAGGAAAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468634 112 - 17550833 GTAAGCTGCCCAATAGCTTTTGA--GAGAGAGGCAAGCTGGTTTACTGCAACCTTCTTAAAGGTATCTGATCTCACATGACCCAcaggtaatatgaatggatggaacgggaaag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69341528 112 - 118206036 GTAAGCTGCCCAATAGCTTTTGA--AAGAGAGGCAATCTGGTTTACCGTAACCTTCTTAAAAGTATCTGATCTCACATGACCCAcaggtaatctgaatgaatggaacgggaaag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111545392 112 - 190429646 GTAAGCTGCCCAATAGCTTTTGA--AAGAGAGGCAAGTTGGTTTACTGCAACCTTCTTAAAGGTATCTGATCTCACATGACCCAcaggtaatatgaatgaatggaacgggaaag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110713529 112 - 189454096 GTAAGCTGCCCAATAGCTTTTGA--AAGAGAGGCAAGTTGGTTTACTGCAACCTTCTTAAAGGTATCTGATCTCACATGACCCAcaggtaatatgaatgaatggaacgggaaag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13281558 112 + 26754465 GTAAGCTGCCCAATAGCTTTTGA--AAGAGAGGCAAGTTGGTTTACTGCAACCTTCTTAAAGGTATCTGATCTCACATGACCCAcaggtaatatgaatgaatggaatgggaaag i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4182824 112 - 5137665 GTAAGCTGCCCAATAGCTTTTGA--AAGAGAGGCAAGTTGGTTTACTGCAACCTTCTTAAAGGTATCTGATCTCacatgacccacaggtaatatgaatgaatggaacgggaaag i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122897677 112 - 135778131 GTAAGCTGCCCAATAGCTTTTGA--AAGAGAGGCAAGTTGGTTTACTGCAACCTTCTTAAAGGTATCTGATCTCACATGACCCAcaggtaatatgaatgaatggaacgggaaag i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2002519 112 + 2427316 GTAAGCTGCCCAATAGCTTTTGA--AAGAGAGGCAAGTTGGTTTACTGCAACCTTCTTAAAGGTATCTGATCTCACATGACCCAcaggtaatatgaatgaatggaacgggaaag i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1293414 112 + 1448899 GTAAGCTGCCCAATAGCTTTTGA--AAGAGAGGCAAGTTGGTTTACTGCAAGCTTCTTAAAGGTATCTGATCTCACATGACCCAcaggtaatatgaatgaatggaacgggaaag i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53015044 112 - 190850796 GTAAGCTGCTCAATAGCTTTTGA--AAGAGAGGCAAGTTGGTTCAATGCAACCTTCTTAAAGGTATCTAATCTCCGGTGACCCAcaggtaatatgaatgaaaggaacaggaaag i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8175576 112 - 15139346 GTAAGCTGCCCAATAGCTTTTGA--AAGAGAGGCAATTTGGTTCAGTGCAACCTTCTTAAAGGTGTCTAATCTCTTGTGACCCAcaggtaatatgaatgaagggaaaaggaaag i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6959241 112 - 7304997 GTAAGCTGCCCAATAGCTTTTGA--AAGAGAGGCAAGTTGGTTCAGTGCAACCTTCTTAAAGATATCTAATCTCATGTGACCCAcaggtaatatgaatgaaaggaaaaggaaag i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9377282 112 - 11631747 GTAAGCTGCCTAATAGCTTTTGA--AAGAGAGGCAAGTTGGTTCAGTGCAACCTTCTTAAACATATCTAATCTCATGTGACCCAcaggtaatatgaatgaaaggaaaaggaaag i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1873645 109 + 4188776 TTCTACTATCCAATGGCTTTTGA--GAGAGAGGAAAGTTGGCTTAGAATAA---CCTTAAAGGTCTCTGATCTCAAATGACCCACAGGTAATATGGATGAGAGGGATGGGAATG i proCoq1.NW_012140747v1 C 0 I 12 s otoGar3.GL873602 8612409 109 + 8790067 TTTTGTTATCCAATGGCTTTTGGATAACAGAGGAAAGTTGG-TTAAAATAA---TCTTAAAGGTCTCTTACCTCAGACGTCCCACAGGTAATATGAGTGAGTGGAATGGGAAG- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48001146 102 + 63241923 TCCAGCAG-CCAATGGATTCTGA--GAAAGAGGCCA----GTGTAGAGCAATCTTCTTAAAGGTCTCTGATTTCAAATGACCCA----TAATATGAATGAGTAGAAAAGACAG- i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1785863 224 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=174120.000000 s hg38.chr4_KI270787v1_alt 59398 15 + 111943 atataagacactagg s panTro5.chr4 119624079 15 - 194502333 ATATAAGACACCAGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121037495 15 - 195804263 ATATAAGACACCAGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468746 15 - 17550833 atataagacactagg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69341640 15 - 118206036 atacaagacactagg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111545504 15 - 190429646 atataagacactagg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110713641 15 - 189454096 atataagacactagg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13281670 15 + 26754465 atataagacactagg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4182936 15 - 5137665 atgtaagacactagg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122897789 15 - 135778131 atataagacactagg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2002631 15 + 2427316 atgtaagacactagg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1293526 15 + 1448899 atataagacactagg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53015156 15 - 190850796 attcaagacactaag i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8175688 15 - 15139346 atgcaagacactagg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6959353 15 - 7304997 atacaagacactagg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9377394 15 - 11631747 atacaagacactagg i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8612518 15 + 8790067 ATATATGACATTAAG i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48001248 15 + 63241923 ATCAAAGACATCAAG i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1873754 12 + 4188776 I e micMur3.chrUn_NW_017968520v1 1785863 224 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=1534720.000000 s hg38.chr4_KI270787v1_alt 59413 129 + 111943 --gagt-ggggagactgaggacctggagacctcaaagctt------------------gtctat-gggggtacacattattctgatccagctgCTGCTTTTAG-TTTTTTAAAGAGAAGCCAAAAA-CTTGATTTTTATTTTTATGAAGATC-C s panTro5.chr4 119624094 129 - 194502333 --GAGT-GGGGAGACTGAGGACCTGGAGACCTCAAAGCTT------------------GTCTAT-GGGGGTACACATTATTCTGATCCAGCTGCTGCTTTTAG-TTTTTTAAAGAGAAGCCAAAAA-CTTGATTTTTATTTTTATGAAGATC-C i panTro5.chr4 C 0 C 0 s panPan2.chr4 121037510 129 - 195804263 --GAGT-GGGGAGACTGAGGACCTGGAGACCTCAAAGCTT------------------GTCTAT-GGGGGTACACATTATTCTGATCCAGCTGCTGCTTTTAG-TTTTTTAAAGAGAAGCCAAAAA-CTTGATTTTTATTTTTATGAAGATC-C i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468761 129 - 17550833 --gagt-ggggagactgaggacctggagacctcaaagctt------------------gtctat-gggggtacacattattctgatccagctgctgcttttag-ttttttaaagagaagccaaaaa-cttgatttttatttctatgaagatc-c i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69341655 130 - 118206036 --gagt-ggggagactgaggacctggagacctcaaggctt------------------gtctat-gggggtgcacattattctgatccagctgCTGCTGTTAG-TTTTTTAAAGAGAAGGCAAAAAGCTTGATTTTTATTTTTATGAAGATC-C i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111545519 130 - 190429646 --gagt-ggggagattgaggacctggagacctcaaggctt------------------gtcagt-gggggtacacattattttgatccagctgtttcttTTAG-Ttttttaaagagaagccaaagagcttgatttttatttttatgaagatc-c i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110713656 130 - 189454096 --gagt-ggggagattgaggacctggagacctcaaggctt------------------gtcagt-gggggtacacattattttgatccagctgtttcttTTAG-TTTTTTAAAGAGAAGCCAAAGAGCTTGATTTTTATTTTTATGAAGATC-C i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13281685 130 + 26754465 --gagt-ggggagattgaggacctggagacctcaaggctt------------------gtcagt-gggggtacacattattttgatccagctgtttcttttag-ttttttaaagagaagccaaagagcttgatttttatttttatgaagatc-c i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4182951 130 - 5137665 --gagt-ggggagactgaggacctggagacctcaaggctt------------------gtcagt-gggggtacacattattttgatccagctgcttcttTTAG-Ttttttaaagagaagccaaaaagcttgatttttatttttatgaagatc-c i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122897804 130 - 135778131 --gagt-ggggctactgaggacctggagacctcaaggctt------------------gtcagt-gggggtacacattattttgatccagctgcttcttTTAG-TTTTTTAAAGAGAAGCCAAAAAGCTTGATTTTTATTTTTATGAAGATC-C i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2002646 128 + 2427316 --gagt-ggggagactgaggacctggagacctcaaggctt------------------gtcagt-gggggtaCACATAATTTTGATCCAGCTGCTtcttttag-tttttt--agagaagccaaaaagcttgatttttatttttatgaagatt-c i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1293541 130 + 1448899 --gagt-ggggagactgaggacctggagacctcaaggctt------------------gtcagt-gggggtacacattattttgatccagctgcttcttttag-ttttttaaagagaagccaaaaagcttgatttttatttttaagaagatc-c i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53015171 124 - 190850796 --aagt-ggagagactgaggacctgaagacctcatggctt------------------gtcaat-gggggcatg------cttgattcagctGCTTCTTTTAG-Ttttttaaagagaagccaaaaagcttgatttttatttttatgaagatc-c i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8175703 131 - 15139346 --aagt-ggagagactgaggacctgaagacctcgtggctt------------------gtcaatggggggcatgtattattctgattcagctgcttctttccg-ttttttaaagagaagccaaaaagcttgatttttatttttaggaagatc-c i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6959368 132 - 7304997 --aagt-ggagagactgaggacctgaagacctcatgactt------------------gtcaat-gggggcatgtattattctgattcagctgcttcttTTAGTTtttttaaagagaagccaaaaagcttgatttttattcttaggaaaatctt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9377409 130 - 11631747 --aagt-ggagagactgaggacctgaagacctcatggctt------------------gtcaat-gagggcatgtattattctgattcagctgcttcttTTAG-TTTTTTAAAGAGAAGCCAAAAAGCTTGATTTTTATTTTTAGGAAGATC-C i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1873766 124 + 4188776 --GAGC-GGAGAGACTGAGGACCTGGAGACCTCATGATTT------------------GTCTAC-AGTGGTGCACATTATTCTGATCCAgctggttcttccag-tttttt-aagggaagccaaaagacttgatttttag-----gagagacc-t i proCoq1.NW_012140747v1 I 12 C 0 s otoGar3.GL873602 8612533 122 + 8790067 --GAGT-GGAGAGACTGAGGCTTTGGAGACCTTATGATTT------------------GTCCAC-AGGGGTATTCATTATTCTTATCCAgctggttcttctag-tttctg-aagggaagccaaaaagcttgatttttat-------gagatc-t i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48001263 145 + 63241923 AAAAGTCATAAAGACTAGGGACCTGGAGACTTCATGACTTGGGGATACATGAGTAATAGTGTAT-GATAATATACATTATTCTGATCTGgccagttcttccag--tttttaaaaacaagccaaaaagcttgatttttat-----gagagatt-t i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1785863 224 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=1176680.000000 s hg38.chr4_KI270787v1_alt 59542 79 + 111943 TTAAGTATTTAAATGTTAGCAAATTTTCA-AAACATACCTGCAG----ACCAGAAATGGCGCATGGGCCAACCTCTGATTTAAA s panTro5.chr4 119624223 79 - 194502333 TTAAGTGTTTAAATGTTAGCAAATTTTCA-AAACATACCTGCAG----ACCACAAATGGCGCATGGGCCAACCTCTGATTTAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121037639 79 - 195804263 TTAAGTGTTTAAATGTTAGCAAATTTTCA-AAACATACCTGCAG----ACCAGAAATGGCGCATGGGCCAACCTCTGATTTAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468890 79 - 17550833 ttaagtgtttaaatgttagcaaattttca-aaaCATACCTGCAG----GCCAGAAATGGCGTATGGGCCAACCTCTGATTTAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69341785 79 - 118206036 TTAAGTGTTTAAATGTTAGCAAATTTTCA-AAACATACCTGCAG----GCCAGAAATGGTGCATGGGCCAACCTCTGATTTAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111545649 79 - 190429646 ttaagtgtttaaatgttagcaaattttca-aaacatacctgcag----gccagaaatggcccatgggccAATCTCTGATTTAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110713786 79 - 189454096 TTAAGTGTTTAAATGTTAGCAAATTTTCA-AAACATACCTGCAG----GCCAGAAATGGCCCATGGGCCAATCTCTGATTTAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13281815 78 + 26754465 ttaagtgtttaaatgttagcaaattttca-aaacatacctgcag----gccagaaatggcccatgggccAATCTCTGA-TTAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4183081 79 - 5137665 ttaagtgtttaaatgttagcaaattttca-aaacatacctgcag----gccagaaatggcccttgggccAATCTCTGATTTAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122897934 79 - 135778131 TTAAGTGTCTAAATGTTAGCAAATTTTCA-AAACATACCTGCAG----GCCAGAAATGACCCATGGGCCAATATCTGATTTAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2002774 79 + 2427316 ttaagtgtttaaatgttagcaaattttca-aaacatacctgcag----gccagaaatggcccaggggccCATCTCTGATTTAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1293671 79 + 1448899 ttaagtgtttaaatgttagcaaattttca-aaacatacctgcag----gccagaaatggcccatgggccAATCTCTGATTTAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53015295 79 - 190850796 ttaagtgtttaaatgttagcagattttca-aaacatacctgcag----gccagaaatggcccatgggccagccTCTGATTTAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8175834 79 - 15139346 ttaagtgtttaagtgttagtaaattttca-gaacatacctgcag----ggcagaaatggcccatgggccagccTCTGATTTAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6959500 79 - 7304997 ttaagtgtttaactgttagcaaatttcca-gaacatacctgcag----gccagaaatggcccatgggccagccTCTGATTTAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9377539 79 - 11631747 TTAAGTGTTTAAATGTTAGCAAATTTTCA-GAACATACCTGCAG----GTCAGAAATGGCCCATGGGCCAGCCTCTGATTTAAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1786087 79 + 3286835 TTAAGTATTTAAATGTTAGCAAATTTTCA-AAAAATGCCTGCAG----GCCATAAATGGCCCAGAAGCCAACCTCTGATTTAAA i micMur3.chrUn_NW_017968520v1 I 224 I 104 s proCoq1.NW_012140747v1 1873890 79 + 4188776 ttaagtatttaaatgttagcaaattttca-aaaaatgcctgcag----gccataaatggcccaggggccAACCTCTGATTTAAA i proCoq1.NW_012140747v1 C 0 I 97 s otoGar3.GL873602 8612655 79 + 8790067 ttaagcatttaaatattagcaaattttta-aaaaaGACCTATAG----CCCAGAAATGGCCCAGGGGCCAACCTCTGATTTAAA i otoGar3.GL873602 C 0 I 1 s canFam3.chr13 48001408 83 + 63241923 ttatgtgtttaaatgttagcaaATTTTCATTAAAACACCTGTAGATTAACCTGCAGGGGCCCACAGGCCAA-CTCTGATTAAAA i canFam3.chr13 C 0 C 0 e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=69639.000000 s hg38.chr4_KI270787v1_alt 59621 7 + 111943 GTGGTGG s panTro5.chr4 119624302 7 - 194502333 GTGGTGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121037718 7 - 195804263 GTGGTGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468969 7 - 17550833 GTGGTGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69341864 7 - 118206036 GCGGTTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111545728 7 - 190429646 GTGGTGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110713865 7 - 189454096 GTGGTGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13281893 7 + 26754465 GTGGTGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4183160 7 - 5137665 GTGGTGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122898013 7 - 135778131 GTGGTGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2002853 7 + 2427316 GTGGTGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1293750 7 + 1448899 GTGGTGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53015374 7 - 190850796 GTGTTGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8175913 7 - 15139346 GTGTTGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6959579 7 - 7304997 GTGTTGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9377618 7 - 11631747 GTATTGG i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8612735 7 + 8790067 GAGGTCA i otoGar3.GL873602 I 1 C 0 s canFam3.chr13 48001491 7 + 63241923 GTTGTAG i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1873969 97 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786166 104 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=-3758.000000 s hg38.chr4_KI270787v1_alt 59628 2 + 111943 GA s panTro5.chr4 119624309 2 - 194502333 GA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121037725 2 - 195804263 GA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468976 2 - 17550833 GA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69341871 2 - 118206036 GA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111545735 2 - 190429646 GA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110713872 2 - 189454096 GA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13281900 2 + 26754465 GA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4183167 2 - 5137665 GA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122898020 2 - 135778131 GA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2002860 2 + 2427316 GA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1293757 2 + 1448899 GA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53015381 1 - 190850796 A- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8175920 1 - 15139346 G- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6959586 1 - 7304997 G- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9377625 1 - 11631747 G- i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48001498 2 + 63241923 GA i canFam3.chr13 C 0 I 204 e proCoq1.NW_012140747v1 1873969 97 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786166 104 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I e otoGar3.GL873602 8612742 0 + 8790067 C a score=5634518.000000 s hg38.chr4_KI270787v1_alt 59630 590 + 111943 AACatcaaaaaagcaatacaccatgatcaagtgggtttcatcccagggatgcagggatggtttgacatatgcaagtcaataaatgtggtacatcacat-acgcagaattaaaaacaaaaaccatattatcatctcaatagacacag-gaaaaa-----caataaaatccagcagcccattatgagaaaaattctcaacaaactaggcatagaagggac----------------------------------ttaact------------------------------------------cagaataataaaagctatatatgacaaacccacagccaacatcatactgaatggggaaaagttgaaagcattccacactgagaactggaacaagacaagatgcccattttcaccacttctatttaacacagtactagaagtcctagccagagcaatcaggcaagagaaagaaataaagaata---------------------tccaaattgg---------------------aaaagagggagtccaa---------------------ctatcactgtttgc--------caatgatatacctacaaaaccctaaagactgctcaaaaagactcccagatttgatcaatgaatttggtaaagtctcaggttacaaaatcagtgtacacaaatcagtagcacttctatacactaacaataaccaagctgagaatcaaatcaa s panTro5.chr4 119624311 590 - 194502333 Aacatcaaaaaagcaatacaccatgatcaagtgggtttcatcccagggatgcagggatggtttgacatatgcaagtcaataaatgtggtacatcacat-acgcagaattaaaaacaaaaaccatattatcatctcaatagacacag-gaaaaa-----caataaaatccagcagccctttatgagaaaaattctcaacaaactaggcatagaagggac----------------------------------ttaact------------------------------------------cagaataataaaagctatacatgacaaacccacagccaacatcatactgaatggggaaaagttgaaagcattccacagtgagaactggaacaagacaagatgcccattttcaccacttctatttaacacagtactagaagtcctagccagagcaatcaggcaagagaaagaaataaagaata---------------------tccaaattgg---------------------aaaagagggagtccaa---------------------ctatcactgtttgc--------caatgatacacctacaaaaccctaaagactgctcaaaaagactcccagatttgatcaatgaatttggtaaagtctcaggttataaaatcagtgtacacaaatcagtagcacttctacacactaacaatgaccaagctgagaatcaaatcaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121037727 590 - 195804263 AACatcaaaaaagcaatacaccatgatcaagtgggtttcatcccagggatgcagggatggtttgacatatgcaagtcaataaatgtggtacatcacat-acgcagaattaaaaacaaaaaccatattatcatctcaatagacacag-gaaaaa-----caataaaatccagcagccctttatgagaaaaattctcaacaaactaggcatagaagggac----------------------------------ttaact------------------------------------------cagaataataaaagctatacatgacaaacccacagccaacatcatactgaatggggaaaagttgaaagcattccacactgagaactggaacaagacaagatgcccattttcaccacttctatttaacacagtactagaagtcctagccagagcaatcaggcaagagaaagaaataaagaata---------------------tccaaattgg---------------------aaaagagggagtccaa---------------------ctatcactgtttgc--------caatgatacacctacaaaaccctaaagactgctcaaaaagactcccagatttgatcaatgaatttggtaaagtctcaggttacaaaatcagtgtacacaaatcagtagcacttctacacactaacaatgaccaagctgagaatcaaatcaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4468978 589 - 17550833 AACatcaaaaaagcaatataccatgatcaagtgggtttcatcccagggatgcagggatggtttgacataagcaagtcaataaatgtggtacatcacat-acgcagaattaaaaacaaaaaccatattatcatctcaatagacacag-gaaaaa-----caataaaatccagcagccctttatgagaaaaatcctcaacaaactaggcatagaagggac----------------------------------ttaact------------------------------------------cagaataataaaagctatatatgacaaacccacggccaacatcataccgaatggggaaaagttgaaagcattccacactgagaactggaacaagacaagatgccca-tttcaccacttctatttaacacagtactagaagtcctagccagagcaatcaggcaagagaaagaaataaagaata---------------------tccaaattgg---------------------aaaagagggagtccaa---------------------ctatcactgtttgc--------caatgatatacctacaaaaccctaaagactgctcaaaaagactcccagagttgatcaatgaatttggtaaagtctcaggttacaaaatcagtgtacacaaatcagtagcacttctatacactaacaatgaccaagctgagaatcaaatcaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69341873 590 - 118206036 AACatcaaaaaagcaatagaccatgatcaagtgggtttcatcctagggatgcagggatggtttgacatatgcaagtcaataaatgtggtacatcacataacgcagaattaaaaacaaaaaccatattatcatctcaatagatacag-aaaaaa-----caataaaatccagtag-gctttatgagaaaaaccctcaataaactaggcatagaagggac----------------------------------ttaact------------------------------------------cagaataataaaagctatatatgacaaacccacagccaacatcataccgaatggggaaaagttgaaagcattccacactgagaactggaacaagacaagatgcccattttcaccacttctatttaacacagtactagaagtcctagccagagcaatcaggcaagataaagaaataaagaata---------------------tccaaattgg---------------------aaaagagggagtccaa---------------------ctatcactgtttgc--------caatgatatacctacaaacccctaaagactgctcaaaaagactctcagatttgatcaacgaatttggtaaagactcaggttacaaaatcagtgtacacaaatcagtagcactgctatatactaacaatgaccaagctgagaatcaaatcaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111545737 612 - 190429646 AACAGcaaaaaagtaatataccatgatcaagtgggtttcatcccagggatgcagggatggtttgacatatgcaagtcaataaatgtgatacatcacat-acacagaattaaaaacaaaaatcatattatcatctcaatagatacgg-aaaaaaa---cccataaaatccagcatccctttatgagaaaaaccctcaacaaactaggcatagaagggac----------------------------------ttaact------------------------------------------cagaataataaaagctatatatgacaaacccacagccaacatcataccaaat-gggaaaagttgaaagcattccacactgagaactggaacaagacaagatgcccatttgcaccacttctatttaacatagtactagaagtcctagccagagcaatcaggcaagagaaagaaataaagaata---------------------tccaaattgg---------------------aaaagaggaagtccaaattggaaaagaggaagtccagctgtcactgtttgc--------caatgatatacctaaaaaaccctaaagactgctcaaaaacactctcagatttgagcaacgaatttggtaaagtctcaggttacaaaattagtgtacacaaatcagtagcactgctatacattaacaatgaccaagctgagaatcaaatcaa i rheMac8.chr5 C 0 I 6562 s macFas5.chr5 110713874 612 - 189454096 AACAGcaaaaaagtaatataccatgatcaagtgggtttcatcccagggatgcagggatggtttgacatatgcaagtcaataaatgtgatacatcacat-acacagaattaaaaacaaaaatcatattatcatctcaatagatacgg-aaaaaaa---cccataaaatccagcatccctttatgagaaaaaccctcaacaaactaggcatagaagggac----------------------------------ttaact------------------------------------------cagaataataaaagctatatatgacaaacccacagccaacatcataccaaat-gggaaaagttgaaagcattccacactgagaactggaacaagacaagatgcccatttgcaccacttctatttaacatagtactagaagtcctagccagagcaatcaggcaagagaaagaaataaagaata---------------------tccaaattgg---------------------aaaagaggaagtccaaattggaaaagaggaagtccagctgtcactgtttgc--------caatgatatacctaaaaaaccctaaagactgctcaaaaacactctcagatttgagcaacgaatttggtaaagtctcaggttacaaaattagtgtacacaaatcagtagcactgctatacattaacaatgaccaagctgagaatcaaatcaa i macFas5.chr5 C 0 I 7610 s macNem1.NW_012012466v1 13281902 612 + 26754465 AACAGcaaaaaagtaatataccatgatcaagtgggtttcatcccagggaggcagggatggtttgacatatgcaagtcaataaatgtgatacatcacat-acacagaattaaaaacaaaaatcatattatcttctcaatagatacgg-aaaaaaa---cccataaaatccagcatccctttatgagaaaaaccctcaacaaactaggcatagaagggac----------------------------------ttaact------------------------------------------cagaataataaaagctatacatgacaaacccacagccaacatcataccaaat-gggaaaagttgaaagcattccacactgagaactggaacaagacaagatgcccatttgcaccacttctatttaacatagtactagaagtcctagccagagcaatcaggcaagagaaagaaataaagaata---------------------tccaaattgg---------------------aaaagaggaagtccaaattggaaaagaggaagtccagttgtcactgtttgc--------caatgatatacctaaaaaaccctaaagactgctcaaaaacactctcagatttgagcaacgaatttggtaaagtctcaggttacaaaattagtgtacacaaatcagtagcactgctatacattaacaatgaccaagctgagaatcaaatcaa i macNem1.NW_012012466v1 C 0 I 6114 s cerAty1.NW_012001307v1 4183169 632 - 5137665 aacagcaaaaaagtaatataccatgatcaagtgggtttcatcccagggatgcagggatggtttgacatatgcaagtcaataaatgtgatacatcacat-acacagaattaaaaacaaaaatcatattatcatctcaatagatacgg--aaaaaa---cccctaaaatccagcatccctttatgagaaaaaccctcaacaaactaggcatagaagggac----------------------------------ttaact------------------------------------------cagaataataaaagctatatatgacaaacccacagccaacatcataccaaat-gggaaaagttgaaagcattccacactgagaactggaacaagacaagatgcccattttcaccacttctatttaacatagtactagaagtcctagccagagcaatcaggcaagagaaagaaataaagaatatccaaattggaaaagaggaagtccaaattgg---------------------aaaagaggaagtccaaattggaaaagaggaagtccagttgtcactgtttgc--------caatgatatacctgaaaaaccctaaagactgctcaaaaacactctcagatttgagcaacaaatttggtaaagtctcaggttacaaaattagtgtacacaaatcagtagcactgctatacattaacaatgaccaagctgagaatcaaatcaa i cerAty1.NW_012001307v1 C 0 I 6094 s chlSab2.chr7 122898022 612 - 135778131 AACAGcaaaaaagtaatataccatgatcaagtgggtttcatcccagggatgcaggaatggtttgacatatgcaagtcaataaatgtgatacatcacat-atgcagaattaaaaacaaaaatcatattatcatctcaatagatacag-aaaaaaa---cccataaaatccagcagccctttatgagaaaaaccctcaacaaactaggcatagaagggac----------------------------------ttaact------------------------------------------cagaataataaaagctatatatgacaaacccacagccaacatcataccaaat-gggaaaagttgaaagcattccacactgagaaccggaacaagacaagatgcccattttcaccacttctatttaacatagtactagaagtcctagctagagcaatcaggcaagagaaagaaataaataata---------------------tccaaattgg---------------------aaaagaggaagtccaaattggaaaagaggaagtccagttgtcactgtttgc--------caatgatatacctaaaaacccctaaagactgcccaaaaacactctcagatttgagcaacgaatttggtaaagtctcaggttacaaaattagtgtacacaaatcagtagtactgctatacatcaacaatgaccaagctgagaatcaaatcaa i chlSab2.chr7 C 0 I 2 s manLeu1.NW_012104388v1 2002862 633 + 2427316 AACAGcaaaaaagtaatataccatgatcaagtgggtttcatcccagggatgcagggatggtttgacatatgcaagtcaataaatgtgatacatcacat-acacagaattaaaaacaaaaatcatattatcatctcaatagatacgg-aaaaaaa---cccctaaaatccagcatccctttatgagaaaaaccctcaacaaactaggcatagaagggac----------------------------------ttaact------------------------------------------cagaataataaaagctatatatgacaaacccacagccaacatcataccaaat-gggaaaagttgaaagcattccacactgagaactggaacaagacaagatgcccattttcaccacttctatttaacatagtactagaagtcctagccagagcaatcaggcaagagaaagaaataaagaata---------------------tccaaattggaaaagaggaagtccaaattgcaaaagaggaagtccaaattggaaaagaggaagtccagttgtcactgtttgc--------caatgatatacctgaaaaaccctaaagactgctcaaaaacactctcagatttgagcaaaaaatttggtaaagtctcaggttacaaaattagtgtacacaaatcagtagcactgctatacattaacaatgaccaagctgagaatcaaatcaa i manLeu1.NW_012104388v1 C 0 I 8084 s colAng1.NW_012119221v1 1293759 612 + 1448899 AACAGcaaaaaagtaatataccatgatcaagtgggtttcatcccagggatgcagggatggtttgacatatgcaagtcaataaatgtgatacatcacat-atgcagaattaaaaacaaaaaccatattatcatctcaatggatacag-aaaaaaa---aacacaaaatccagcagccctttatgagaaaaaccctcaacaaactaggcatagaagggac----------------------------------ttaact------------------------------------------cataataataaaagctatatatgacaaacccacagccaacatcataccaaat-gggaaaagttgagagcattccacactgagaactggaacaagacaagatgcccattttcaccacttctatttaacatagtactagaagtcctagccagagcaattaggcaagagaaagaaataaagaata---------------------tccaaattgg---------------------aaaagaggaagtccaaattggaaaagaggaagtccagttgtcactgtgtgc--------caatgatatacctaaaaaaccctaaacattgttcaaaaccactctcagatttgagcaacgaatttgataaagtctcaggttacaaaattagtatacacaaatcagtagcactgccatacattaacaatgaccaagttgagaatcaaatcaa i colAng1.NW_012119221v1 C 0 I 7143 s calJac3.chr3 53015382 676 - 190850796 Aacatcaaaaaagtagtatg-catgatcaggtgggtttcatcccagggatgcagggatgctttaacatatgcaagtcaataaatgtgatatatcgcat-aaggagaattacaaacaaaaaccatatgatca-cctaatacatacagaaaaaaaaaaaacaataaagtccagcagccctgtatcagaaaaaccttcaacaaactaggcatagaagagactataaaatagtaatagttacagaataataattaattattttctgtattaactaataattaattaattagtttaataattaaacagaataataaaagctatatatgacaaacccacagccaacatcatactgaaaggggaaaagttgaaagcattccacactgagaactggaacaagacaagatgccaagtttcaccacttctatttaacatagtacgaaaagtcctagccagagcaatcaggtaagagaaagaaataaagcgta---------------------tccaaattgg---------------------aaaagaggaagttcaa---------------------ctatcactgtttgcctgttgttcaatgatatacctggaaaaccctaaagactcctcagaaagactctcagatttgatcaacaaattcagt--agtctcaggttacaaaatcagtgtacacaaatcagtagcactgctatatactaacaatgaccaagctgagaatcaaatcaa i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8175921 596 - 15139346 AACACCAAAAAAGTAGTATG-catgatcatgtgggtttcatcccagggatgcagagatgccttaacatatgcaagtcaataaatgtgatacatcacat-aagcagaactacaaacaaaaatcatatg---a-cccaatacatagag-aaaaaaaaacccaataaaatccagcagccctttatgagaaaaaccttcaacaaactaggcatagaagggac----------------------------------ttatct------------------------------------------cagaataataaaagctatatatgacaaacccacagccaacatcataccgaatggggaaaagttgaaagcattccgcaatgagaactggaacaagacaagatacccattttcaccacttctaattaacatagtactaaaagtcctagccagagcaatcaggtaagagaaagaaataaagagta---------------------tccaaactgg---------------------aaaagaggaagttcaa---------------------ctatcactgtgtgcctgttgttcaatgatatacctagaaaaccctaaagactcctcaaaaagactcttagatttgatcaacaaattcagt--agtctcaggttacaaaatcaacgtacacaaatcagtagcattgctatatactaacaataaccaagctgagaatcaaatcaa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6959587 585 - 7304997 AACGTCAAAAAAGTAGTATG-catgatcaggtgggtttcatcccagggatgcagggatgctttaacaaatgcaagtcaataaatgtgatacatcacat-cag--------caaacaaaaaccatacgatga-cccaatacatacag-aaaaaaaaa------aaaatccagcatccctttatgagaaaaaccttcaacaaactcggcatagaagggac----------------------------------ttatct------------------------------------------cagaataataaaatctatagatgacaagcccacagccaacatcatactgaatggggaaaagttgaaagcattgcacactgagaactgaaacaagacaagatgcccattttcaccacttctatttaacaaagtatgaaaagtcctagccagagcaatcaggtaagagaaagaaataaaatgta---------------------tccaaattgg---------------------aaaagaggaagttcaa---------------------ctatcactgtttgcctgttgttcaatgatatacctagaaaaccctaaagactcctcaaaaagactctcagatttgatgaacaaattcagt--agtctcaggttacaaaatcagtgtacacaaagcagtagcactgctatatactaacaatgaccaagctaagaatctaatcaa i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9377626 595 - 11631747 AACatcaaaaaagtagtatg-catgatcaggtgggtttcatcccagggatgcagggatgctttaacatatgcaagtcaataaatgtgatacatcacat-aagcagaattacaaacaaaaaccatatgatga-cccaatacatacag-aaaaaaaca----ataaaatccagcagccctttatgagaaaaaccttcaacaaactaggcatagaagggac----------------------------------ttatct------------------------------------------cagaataataaaagctatatatgacagacccacagccaacatcatactgaatggggaaaagttgaaagcattccacactgagaactggaacaagacaagatgcccattttcaccacttctatttaacatagtactaaaagttctagccagagcaatcaggtaagagaaagaaataaagtgta---------------------tccaaattgg---------------------aaaagaggaagttcaa---------------------ctatcactgtttgcctgttgttcaatgatatacctagaaaaccctaaagactcctcaaaaagactctcagatttgatcaacaaattcagt--agtctcaggttacaaaatcagtgtacacaaatcagtagcactgctatatactaacaatgaccaagctgagaatcaaatcaa i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1873969 97 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786166 104 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I e otoGar3.GL873602 8612742 0 + 8790067 C e canFam3.chr13 48001500 204 + 63241923 I a score=479437.000000 s hg38.chr4_KI270787v1_alt 60220 159 + 111943 gaactcaaaattagccaggcatggtggtgcgtgcctgtaatcccagttattcgggaggctgaggcaggagaatagcttgaacccaggaggcagaggtt-cagtgagccgagactgcgccactgcactccagcctgggtgacagagtgagactccatctca s panTro5.chr4 119624901 159 - 194502333 gaactcaaaattagccaggcatggtggtgcgtgcctgtaatcccagttatttgggaggctgaggcaggagaatagcttgaacccaggaggcagaggtt-cagtgagccgagactgcgccactgcactccagcctgggtgacagagtgagactccatctca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121038317 159 - 195804263 gaactcaaaattagccaggcatggtggtgcgtgcctgtaatcccagttattcgggaggctgaggcaggagaatagcttgaacccaggaggcagaggtt-cagtgagccgagactgcgccactgcactccagcctgggtgacagagtgagactccatctca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4469567 159 - 17550833 gaactcaaaattagccaggcatggtggtgcgtgcctgtaatctcagttatacgggaggctgaggcaggagaatagcttgaacccaggaggcagaggtt-cagtgagccgagactgcgccactgcactccagcctcggtgacagagtgagactccatctca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69342463 159 - 118206036 gaactcaaaattagccagtcatgctggtgcatgcctgtaatcccacttatttgggaggctgaggcaggagaatagcttgaacccaggaggcagaggtt-cagtgagctgagattgcaccactgcactccagcctgggtgacagagtgagactccatctca i nomLeu3.chr9 C 0 C 0 s calJac3.chr3 53016058 160 - 190850796 gaactcaaaattagccaggcatggtggcatgtgcctgtaatcccagttatttgggaggctgaggcaggagaatagcttgaacccaggaggcagaggttgcagcgagctgagattgcaccactgcacttcagcctgggtgacagagcgagactccatctcc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8176517 160 - 15139346 gaactcgaaatgagccaggcatggtggcatgtgcttgtaatcccagttattcgagaggctgaggcaggagaatagattgaatccgggagacacaggttgcagtgagctgagattgcaccactgcacttcagcctgggtgacagagcaagactccatctcc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6960172 160 - 7304997 gaactcaaaattagccaggcctggtggcatgtgcctgtaatcccagttatttgggaggctgaggcaggagaatagcttgtacccgggaggcagaggttgcagtgagctaagattgcaccactgcacttcagcctgggtgacagagtgatactccatctcc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9378221 160 - 11631747 gaactcaaaattagccagacatggtggcatgtgcctgtaatcccagttatttgggaggctgaggcaggagaatagcttgaacccaggggacagaggttgcagtgagctgagattgcaccattgcacttcagcctgggtgacagagcgagactccatctcc i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1873969 97 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786166 104 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I e otoGar3.GL873602 8612742 0 + 8790067 C e canFam3.chr13 48001500 204 + 63241923 I e colAng1.NW_012119221v1 1294371 7143 + 1448899 I e manLeu1.NW_012104388v1 2003495 8084 + 2427316 I e chlSab2.chr7 122898634 2 - 135778131 I e cerAty1.NW_012001307v1 4183801 6094 - 5137665 I e macNem1.NW_012012466v1 13282514 6114 + 26754465 I e rheMac8.chr5 111546349 6562 - 190429646 I e macFas5.chr5 110714486 7610 - 189454096 I a score=3914907.000000 s hg38.chr4_KI270787v1_alt 60379 1109 + 111943 aaaacaaaacaaaa---------------------aaaccaataa-----actcaattccttttacaacagctgcaaga-------------------aaagtaaaatacctaggaatatacttagtcaaggaggtaaacaatctctacaaggggaactacgaaacactgctgaacgaaataacagatgatacaaacaaatggaaaaatatcccatgctcatggattggaataattaatgttgtgaaaatcaccatactgcccaaagcaatctatagatctgatacaattcccatcaaattaccaacatta-ttttttcacagaattagagaagacaatcctaaaattgatatggaacc-aaaaaagagcccgcatacccaaagaaatcctaaacaaaaagagcaaatctggaggcatctcattaccagacttcaaattatactccaaggct-acagttaccaaaacaacataatagtggtataaaaataggcacataggccaatggaacagaatagagaacatagaaataaagccaaatacttacagccaactgatcttcgacaaagcaaacaaaaacataaattggggaaagaataccctattcaacaaatggtgctggggcaattggcaagccacgtgtagaagaatgaaactggatccccatttctcaccttaa----ataaaaatcaactcaagatggatgaaagacttaatctaaacctgaaaccataaaaattctagaagataacattggaaaaactgtttcgggcattggtctaggcaaagaattcatggctaaaaccccaaaagtaaatgcaacaaaaac-aaaaataaataaatgggatctaattaaactaaaaagcttctgcacagtaaatgaaatagttatcaaaggaaacagataacgcacagaatgggagaaaatattgcaagctatgcatctgacaaaggacttgtatccataacctacaaggaactcaaagaaatcagcaagaaaa---aaataatctatcaaaaagtgggcaaatgatatgagtagatatttctcaaaagaaaagggggtatacaaatggccaagaaacatatg-aaaaagtacttaacatcactaataatcagggaaatgcaaattaaaaccacaatgagataccaccttaatcctgc s panTro5.chr4 119625060 1120 - 194502333 aaaacaaaacaaaa----------caaaac-aaaaaaaCCAATAa-----actcaattccttttacaacagctgcaaga-------------------aaagtaaaatacctaggaatatacttagtcaaggaggtaaacaatctctacaaggggaactacaaaacattgctgaacgaaatcacagatgatacaaacaagtggaaaaatatcccatgctcatggattggaataattaatgttgtgaaaatcaccatactgcccaaagcaatctatagatctgatacaattcccatcaaattaccaacatta-ttttttcacagaattagagaagacaatcctaaaattgatatggaacc-aaaaaagagcctgcatacccaaagaaatcctaaacaaaaagagcaaatctggaggcatctcattaccagacttcaaattatactccaaggcttacagttaccaaaacaacataatagtggtataaaaataggcacgtaggccaatggaacagaatagagaacatagaaataaagccaaatacttacagccagctgatcttcgacaaagcaaacaaaaacataaattggggaaagaataccctattcaacaaatggtgctggggcaattggcaagccacgtgtagaagaatgaaactggatccccatttctcaccttaa----ataaaaatcaactcaagatggatgaaagacttaatctaaacctgaaaccataaaaattctagaagataacattggaaaaactgtttggggcattggtctaggcaaagaattcatggctaaaaccccaaaagtaaatgcaacaaaaac-aaaaataaataaatgggatctaattaaactaaaaagcttctgcacagtaaatgaaatagttatcaaagtaaacagataacacacagaatgggagaaaatatggcaagctatgcatctgacaaaggacttgtatccataacctacaaggaactcaaagaaatcagcaagaaaa---aaataatctatcaaaaagcgggcaaatgatatgagtagatatttctcaaaagaaaagggggtatacaaatggccaagaaacatatg-aaaaagtacttaacatcactaatcatcagggaaatgcaaattaaaaccacaatgagataccaccttaatcctgc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121038476 1129 - 195804263 aaaacaaaacaaaacaaaacaaaacaaaac-aaaaaaaccaataa-----actcaattccttttacaacagctgcaaga-------------------aaagtaaaatacctaggaatatacttagtcaaggaggtaaacaatctctacaaggggaactacaaaacattgctgaacgaaatcacagatgatacaaacaagtggaaaaatatcccatgctcatggattggaataattaatgttgtgaaaatcaccatactgcccaaagcaatctatagatctgatacaattcccatcaaattaccaacatta-ttttttcacagaattagagaagacaatcctaaaattgatatggaacc-aaaaaagagcctgcatacccaaagaaatcctaaacaaaaagagcaaatctagaggcatctcattaccagacttcaaattatactccaaggct-acagttaccaaaacaacataatagtggtataaaaataggcacgtaggccaatggaacagaatagagaacatagaaataaagccaaatacttacagccagctgatcttcgacaaagcaaacaaaaacataaattggggaaagaataccctattcaacaaatggtgctggggcaattggcaagccacgtgtagaagaatgaaactggatccccatttctcaccttaa----ataaaaatcaactcaagatggatgaaagacttaatctaaacctgaaaccataaaaattctagaagataacattggaaaaactgtttggggcattggtctaggcaaagaattcatggctaaaaccccaaaagtaaatgcaacaaaaac-aaaaataaataaatgggatctaattaaactaaaaagcttctgcacagtaaatgaaatagttatcaaagtaaacagataacacacagaatgggagaaaatattgcaagctatgcatctgacaaaggacttgtatccataacctacaaggaactcaaagaaatcagcaagaaaa---aaataatctatcaaaaagcgggcaaatgatatgagtagatatttctcaaaagaaaagggggtatacaaatggccaagaaacatatg-aaaaagtacttaacatcactaatcatcagggaaatgcaaattaaaaccacaatgagataccaacttaatcctgc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4469726 1118 - 17550833 aaaacaaaacaaaa----------caaaac-aaaaaaaCCAATAa-----actcaattccttttacaacagctgcaaga-------------------aaagtaaaatacctaggaatatacttagtcaaggaggtaaacaatctctacaaggggaactacaaaacactgctgaacgaaatcacagatgatacaaacaaatggaaaaatatcccatgctcatggattggaataattaatgttgtgaaaatcaccatactgcccaaagcaatctatagatctgatacaattcccatcaaattgccaacatta--tttttcacagaattagagaagacaatcctaaaattgatatggaaccaaaaaaagagcccgcatacccaaagaaatcctaaacaaaaagaacaaatctggaggcatctcattaccagacttcaaattatactccaagcct-acagttaccaaaacaacataatagtggtataaaaataggcacataggccaatggaacagaatagagaacatagaaataaagccaaatacttacagccaactgatctttgacaaagcaaacaaaaacataaattggggaaagaataccctattcaacaaatggtgctggggcaattggcaagccacgtgtagaagaatgaaattggacccccatttctcaccttaa----ataaaaatcaactcaagatggatgaaagacttaatctaaacctgaaaccataaaaattctagaagataacattggaaaaactgtttggggcattggtctaggcaaagaattaatggctaaaaccccaaaagtaaatgcagcaaaaac-aaaaataaataaatgggatctaattaaactaaaaagcttctgcacagtaaatgaaataattatcaaagtaaacagataatgcacagaatgggagaaaatattgcaagctatgcatctgacaaaggacttgtatccataacctacaaggaactcaaagaaatcagcaag-aaa---aaataatatatcaaaaagcgggcaaatgatatgagtagacatttctcaaaagaaaatggggtatacaaatggccaagaaacatatg-aaaaagcacttaacatcactaatcatcagggaaatgcaaattaaaaccacaatgagataccaccttcatcctgc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69342622 1119 - 118206036 aaaacaaaacaaaa----------caaaac-aaaaaaaCCAATAa-----actcaatcccttttacaacagctgcaaga-------------------aaagtaaaatacctaggaatatacttagtcaatgaggtaaacaatctctacaaggggaactacaaaacactgctgaaagaaatcacagatgacacaaacaaatggaaaaatatcccatgctcatggattggaagaatcaatattgtgaaaatcaccatactgcccaaagcaatctacagatttgatgcaattcccatcaaattaccaacatta-ttttttcacagaattagaaaagacaatcctaaaattaatatggaacc-aaacaagagcccgcatagccaaagaaatcctaaacaaaaagaacaaatcgggaggcatcacattaccagacttcaaattatactccaaggct-atagttaccaaaacaacataatagtggtataaaaataggcacataggccaatggaacagaagagagaacacagaaatgaagccaaatacttacagccaactgatctttgacaaagcatacacaaacataaactggggaaagaacaccctattcaacaaatggggctggggtaattggcaagccacttgcagaagaatgaaactggatccccatttctcaccgtaa----ataaaaatcaactcaggatggatgaaagacttaatctaaacctgaaaccataaaaattctagaagataacattggaaaaactctttggggcattggtctaggcaaagaattcatggctaaaaccccaaaagcaaatgcaacaaaaacaaaaaataaataaatgggatctaattaaaccaaaaagcttctgcacagtaagtgaaataattatcaaagtaaacagataacccacagaatgggagaaaatattgcaagctatgcatctgacaaaggacttgtatccataacctgcaaggaactcaaagaaatcagcaagaaaa---aaataatctatcaaaaagtaggcaaatgatatgagtagacatttctcaaaagaaaaggggatatacaaatggccaagaaacatatg-aaaaagcgcttaacatcactaatcatcaggg-aatacaaattaaagccacaatgagataccaccttaatcctgc i nomLeu3.chr9 C 0 C 0 s chlSab2.chr7 122898636 1097 - 135778131 aaaacaaaacaaaa------------------------acaataa-----actcaatcccttttacaacagctgcaaga-------------------aaagtaaaatacctaggaatatacttagtcaaggagataaacaatctctacgaggggaactacaaaacactgctgaaagaaatcacagatgatacaaacacatggaaaaatatcccatgctcatggattggaggactcaatattgtgaaaatcactgtactgcccaaagcaatctacagatttgatgcaattcccatcaaattaccaacatta-ttttttcacagaattagaaaagacaattctaaaattgatatgtaacc-aaaaaagagcccacatagccaaagaaatcctaaacaaaaagaacaaatctggaggcatcacattaccagacttcaaattatactccaaggct-atagttaccaaaacaacataatagtggtataaaaataggtacataggcca---gaatagaatagagaacacagaaataaagccaaatacttacagccaactgatcttcgacaaagcaaacaaaaacataaattggggaaagaactccctattcaacaaatggtgctggggtaattggcaagccacgtgtagaagaatgaaactggatccccatttctcaccttaa----ataaaaatcaactcaagatggatgaaagacttaatctaaacctgaaaccataaaaattctagaagataacattggaaaaactctttggggcattggtctaggcaaacaactcatggctaaaaccgcaaaagcaaatgcaacaaaaat-aaaaataaataaatgggacctaattaaactaaaaaggttctgcacagtaaatgaaataattatcaaagtaaacagataacccacagaataggagaaaatattgcaagctatacatctgacataggacttgtatctataacctacaaggaactcaaagaaatcagcaagaaaa---aaataatctatcaaaaagt-ggcaaatgaaatgagtagacatttctcaaaagaa-----gatatacaaatggccaagaaacatatg-aaaatgcgcttaacatcactaatcatcagggaaatgcaaattaaaaccacaatgagataccaccttaattctgt i chlSab2.chr7 I 2 C 0 s calJac3.chr3 53016218 1118 - 190850796 aaaac-aaacaaaa----------caaaacaaaaagaaccaaaac-----actcaatcccttttataacaactgcaagaaaagcagctttgcacaggaaaagtgaaatacccaggaatacacttagtcaaggaggtt------------------aactataaaacactgctgaaagaaatcacagatgaaacaaaccaatggaaagacatcccatgctcttgaattggaagaatcattattgtgaaaatgaccatactgtccaaagcaatctacagacttgatgcaattcccatcaaattatcaacatta-ttttttcacagcattagaaaagacaatcctaaaattgatacacaacc-aaaaaagagcccacatagcaaaagcaatccttagaaaaaggaacaaatctgggggcatcacattaccaaacttcaaattatactccaaggct-atagttaccaaaacaacctgatggtggtataaaaataggcacacagactaatggaacagagtagagaacacagaaataaagccaaatacttatcaccaactgacctttgacaaagcaaaca-aaacataaattggggaaagaacaccctattcaacaaatggtgctgggataattgcctagccacatgtaggagaatgaaactggatccccatttctcaatttgatctcacaaaaatcaactcaagatggatgaaagacttaatctaaacctgaaaccataaaaattctagaagatcacattggaaaaactcttcaggacattggtctaggcaaagaattcatggctaaaagcctaaaagcaaatgcaacaaaaac--aaaataaataaagggaacctaattaaacgaaaaagcttctgcacagtaaatgaaataatcatcaaagtaaatggacaacacacagaatgagagaaaatattgcaaactatgcatctggaaagggactagtatccagaacctacaaggaactcaaagaaatcaataagaaaa--aaaataatccatccaaaagtagacaaatgatatgagcacacatttttcaaaagaa-----gatatacaaatggccaagaaatataag-aaaaaatgcttaacatcactaatcatcagggaaatgcaaattaaaaccacaacgatatatcaccttaatcctgc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8176677 1143 - 15139346 aaaac-aaacaaaa----------caaaacaaaacaaaacaaaacaaaaaactcaatcccttttataacagctgcaagaaaagcagctttgtgcaagaaaagtgaaatacctaggaatacacttagtcaaggaggttaacaatctctacaagaagaactataaaacactgctgaaagaaatcacagatgaaacaaacaaatggaaaaacaccccatgctcttggattgaaagaatcaatattgtgaaaatgaccatactgcccaaagcaatctacagattcgatgtaattcccatcaaattgtcaacattatttttttcatagcattagaaaagacaatcctaaaattgatatgcaacc-aaaaaagagcccacatagcaacagcaatccttagcaaaaggaacaaatctggaggcatcatattaccaaacttcaaattatactccaaggct-acagttaccaaaacaacctgattgtggtataaaaataggcacacagaccaatggaacagaatagagaacacagaaataaagccaaatacttatcaccaaccaacctttgacaaagcaaaca-aaacacaaattggggaaagaacaccttattcaacaaatggtactgggatcattggctagccacatgtaggagaatgaaaccggatccccatttctcagtttgatctcacaaaaatcaactcaagatgcatgaaagacttaatctaaacctgaaaccataaaaattttagaagataacattggaaaaactc-tcaggacattggtctaggcaaagaattcatggctaaaaacccaaaagcaaatgcaacaaaaac-aaaaataaataaagcggacctaattaaactaaaaagcttctgcacagtaaatgaaataattatcaaagtaaatggacaacccacagaatgggagaaaatattgcaaactatgcatctggaaaggaaccagtatccagaacctacaaggaacacaaagaaatcagtaagaaaa-caaaataatccatccaaaagtagacaaatgatatgagcaaacatttctcaaaagag-----gatataaaaatggccaagaaacatatg-aaaaaatgcttaacttcactaatcatcagggaaatgcaaattaaaacgacaatgatatatcaccttaatcctgc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6960332 1121 - 7304997 aaaac-aaacaaaa----------caaaac--------------------actcaatcccttttataacagctgcaagaaaagcagctttgtgcaagaaaagtgaaatacctaggaatacacttagtcaaggaggttaacaatctctacaagaagaactataaaacactgctgaaagaaatcacagatgaaacaaacaaatggaaaaacaccccatgctcttggattggaagaatcaatattgtgaaaatgaccatactgcccaaagtaatctacagatttgatgcaattcccatcaaattatcaacattatttttttcacagcattagaaaagacaatcctaaaattgatctgcaacc-aaaaaagagcccacatagtaaaagcaatccttagcaaaaggaacaaatctggaagcatcatattaccaaacttcaaattatactccaaggct-atagttaccaaaacagcctgatggtggtataaaaataggcacacagaccaatggaacagaatagagaacacagaaataaagccaaatacttatcaccaaccgatcttcgacaaagaaaaca-aaacata---tggagaaagaacaccctattcaacaaacggtgctgggataattggctagccacatgtaggagaatgaaactggatccccatttctcaatttggtctcacaaaaatcaactcaagatggatgaaagacttaatctaaacctgaaaccataaaaattctagaagataacattggaaaaactcttggggacatcagtctaggcaaagaattcatggctaaaacctcaaaagcaaatacaacaaaaac-aaaaataaataagagggacctaattaaactaaaaagcttctgcacagtaaatgaaataattatcaaagtaaatggacaacccacagaatggaagaaaatattgcaaactatgcatctggaaagggactagcatccagaacctacaaggaacctaaagacatcagtaaggaaa-aaaaataatccacccaaaagtagacaaatgatatgagcagatatttctcaaaagaa-----gatatacaaatggccaagaaacatacg-aaaaaatgcttaacatcactaatcatcagggaaatgcacattaaaaccacaatgacatatcaccttaatactgc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9378381 1139 - 11631747 aaaac-aaacaaaa----------caaaac-aaaaaaCCCAaaaa-----actcaatcccttttataacagctgcaagaaaagcagctttgcgcaaggaaagtgaaatacctaggaatacacttagtcaaggaggttaacaacctctacaagaagaactataaaacactgctgaaagaaatcacagacgaaacaaacaaatgggaaaacatcccatgctcttggattggaagaatcagtattgtgaaaatgaccatactgtccaaagcaatctacagatttgatgcaattcccatcaaattatcaacatcatttttttcacagcattagaaaagacaatcctaaaattgatatgcaacc-aaaaaagagcccaaatagcaaaagcaatccttagaaaaaggaacaaatctggaggcatcacattaccaaacttcaaattatactccaaggct-atagttaccaaaacaacctgatggtggtataaagataggcacacacaccaatggaacagaagagagaacacagaaataaagcc-aatacttatcaccaactgatcttcgacaaagcaaaca-aaacataaattggggaaagaacaccctattcaacaaatggtgctgggataattggctagctacgtgtaggagaatgaaactggatccccatttctcaatttgatctcacaaaaatcaactcaagatggatgaaagacttaatctaaacctgaaactataaaaattctagaagataacattggcaaaactcttcaggacattggtctaggcaaagaattcatggctaaaagcccaaaagcaaatgcaacaaaaac-aaaaataaataaaggggacctaattaaactaaaaagtgtctgcacagtaaatgaaataattatcaaagtaaatgaacaacccacagagtgggagaaaatattgcaaactatgcatctggaaaggaactagtatccagaacctacaaggaactcaaagaaatcagtaagaaaaaaaaaataatccatccaaaagtagacaaatgatatgagcagacatttctcaaaagaa-----gatatacaaatggccaagaaacatatgaaaaaaatgcttaacatcactaatcatcagggaaattcaaattaaaaccacaatgatacatcaccttaatcctgc i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1873969 97 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786166 104 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I e otoGar3.GL873602 8612742 0 + 8790067 C e canFam3.chr13 48001500 204 + 63241923 I e colAng1.NW_012119221v1 1294371 7143 + 1448899 I e manLeu1.NW_012104388v1 2003495 8084 + 2427316 I e cerAty1.NW_012001307v1 4183801 6094 - 5137665 I e macNem1.NW_012012466v1 13282514 6114 + 26754465 I e rheMac8.chr5 111546349 6562 - 190429646 I e macFas5.chr5 110714486 7610 - 189454096 I a score=264409.000000 s hg38.chr4_KI270787v1_alt 61488 39 + 111943 aagaatggccattattaaaaagtcaaaaaacaatagatg s panTro5.chr4 119626180 39 - 194502333 aagaaaggccattattaaaaagtcaaaaaacaatagatg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121039605 39 - 195804263 aagaatggccattattaaaaagtcaaaaaacaatagatg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4470844 39 - 17550833 aagaatggccattattaaaaagtcaaaaaacaatagatg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69343741 39 - 118206036 aagaatggccattattaaaaagccaaaaaacaatagatg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111552911 39 - 190429646 Aagaatggccattattaaaaagtcaaaaaacaacagatg i rheMac8.chr5 I 6562 C 0 s macFas5.chr5 110722096 39 - 189454096 aagaatggccattattaaaaagtcaaaaaacaacagatg i macFas5.chr5 I 7610 C 0 s chlSab2.chr7 122899733 39 - 135778131 aagaatggccattattaaaaagtcaaaaaacaatagatg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2011579 39 + 2427316 Aagaatggccattattaaaaagtcaaaaaacaacagatg i manLeu1.NW_012104388v1 I 8084 C 0 s calJac3.chr3 53017336 39 - 190850796 aagaatgaccattattaaaaagtcaaaaaacaatagatg i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8177820 39 - 15139346 aagaatgaccattattaaaacgccaaaaaataatagatg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6961453 39 - 7304997 aagaatggccattattaaaaagtaaaaaaacaatagatg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9379520 39 - 11631747 aagaatgaccattattaaaaagtcaaaaaacaatagatg i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1873969 97 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786166 104 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I e otoGar3.GL873602 8612742 0 + 8790067 C e canFam3.chr13 48001500 204 + 63241923 I e colAng1.NW_012119221v1 1294371 7143 + 1448899 I e cerAty1.NW_012001307v1 4183801 6094 - 5137665 I e macNem1.NW_012012466v1 13282514 6114 + 26754465 I a score=54839.000000 s hg38.chr4_KI270787v1_alt 61527 7 + 111943 ttggcat s panTro5.chr4 119626219 7 - 194502333 ttggcat i panTro5.chr4 C 0 C 0 s panPan2.chr4 121039644 7 - 195804263 ttggcat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4470883 7 - 17550833 ttggcat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69343780 7 - 118206036 ttggcac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111552950 7 - 190429646 ttggcat i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110722135 7 - 189454096 ttggcac i macFas5.chr5 C 0 C 0 s cerAty1.NW_012001307v1 4189895 7 - 5137665 ttggcat i cerAty1.NW_012001307v1 I 6094 C 0 s chlSab2.chr7 122899772 7 - 135778131 ttggcac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2011618 7 + 2427316 ttggcat i manLeu1.NW_012104388v1 C 0 C 0 s calJac3.chr3 53017375 7 - 190850796 ttggcat i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8177859 7 - 15139346 tcggcat i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6961492 7 - 7304997 ttggcat i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9379559 7 - 11631747 ttggcat i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1873969 97 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786166 104 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I e otoGar3.GL873602 8612742 0 + 8790067 C e canFam3.chr13 48001500 204 + 63241923 I e colAng1.NW_012119221v1 1294371 7143 + 1448899 I e macNem1.NW_012012466v1 13282514 6114 + 26754465 I a score=892426.000000 s hg38.chr4_KI270787v1_alt 61534 103 + 111943 ggatgtgg-tgaaaagggaatgcttatacatggctggtgggaatgtaaattagtacaatctctatggaaaacagtgtggagattccttaaagaactaaaagtag s panTro5.chr4 119626226 103 - 194502333 ggatgtgg-tgaaaagggaatgcttatacatggcttgtgggaatgtaaattagtacaatctctatggaaaacagtgtggagattccttaaagaactaaaagtag i panTro5.chr4 C 0 C 0 s panPan2.chr4 121039651 103 - 195804263 ggatgtgg-tgaaaagggaatgcttatacatggcttgtgggaatgtaaattagtacaatctctatggaaaacagtgtggagattccttaaagaactaaaagtag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4470890 103 - 17550833 ggatgtgg-tgaaaagggaatgcttatacatggctggtgggaatgtaaattagtacaatctctatggaaaacagtgtggagattccttaaagtactaaaagtag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69343787 103 - 118206036 ggatgtgg-tgaaaagggaacacttatacataactggtagaaatgtaaattagtacaatctctatggaaaacagtgtggagattccttaaagaactaaaagtag i nomLeu3.chr9 C 0 I 726 s rheMac8.chr5 111552957 103 - 190429646 ggatgtgg-tgaaaagggaacgcttatacatagctggtagaaatgtaaattagtacaatctctatggaaaacaatgtggagattccttaaagaactaaaagtag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110722142 103 - 189454096 ggatgtgg-tgaaaagggaacgcttatacatagctggtagaaatgtaaattagtacaatctctatggaaaacaatgtggagattccttaaagaactaaaagtag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13288628 103 + 26754465 ggatgtgg-tgaaaagggaacgcttatacatagctggtagaaatgtaaattagtacaatctctatggaaaacaatgtggagattccttaaagaactaaaagtag i macNem1.NW_012012466v1 I 6114 C 0 s cerAty1.NW_012001307v1 4189902 104 - 5137665 ggatgtggttgaaaagggaacgcttatacatagctggtagaaatgtaaattagtacaatctttatggaaaacaatgtggagattccttaaagaactaaaagtag i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122899779 103 - 135778131 agatgtgg-tgaaaagggaacgcttatacatagctggtagaaatgtaaattagtacaatctctatggaaaacagtgtggagattccttaaagaactaaaagtag i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2011625 103 + 2427316 ggatgtgg-tgaaaagggaatgcttatacatagctggtagaaatgtaaattagtacaatctttatggaaaacaatgtggagattccttaaagaactaaaagtaa i manLeu1.NW_012104388v1 C 0 C 0 s calJac3.chr3 53017382 101 - 190850796 gaatgtgg-tg--aagggaatccttatacatagctggtagaaatgtaaatcagtacaatctctatggaaaacagtgtggcgattccttaaagaactaaaagtag i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8177866 99 - 15139346 ggatgtag-tg--aagggaacccttatacatagctggtagaaatgtaaattagtacaatctctatggaaaac--tgtggagattccttaaagaactaaaagtag i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6961499 100 - 7304997 ggatgtgg-tg--aagggaacccttatacatagctggtagaaatgtaaatcagtacaatctctatgg-aaacagtgtggatattccttaaagaactcaaagtag i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9379566 101 - 11631747 ggatgtag-tg--aagggaacccttatacatagctggtagaaatgtaaattagtacaatctctatggaaaacagtgtggagattccttaaagaactaaaagtag i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1873969 97 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786166 104 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I e otoGar3.GL873602 8612742 0 + 8790067 C e canFam3.chr13 48001500 204 + 63241923 I e colAng1.NW_012119221v1 1294371 7143 + 1448899 I a score=1074787.000000 s hg38.chr4_KI270787v1_alt 61637 146 + 111943 atctaccattcaatccagcaatcccactactgaatatctacccaaaggacaagaagtcattatatg---aaagacacatgcatacatatgtttattacagcacaattcacaattgcaaagatacgaaaccaacctaagtgtccattgac s panTro5.chr4 119626329 146 - 194502333 atctaccattcaatccagcaatcccactactgaatatctacccaaaggacaagaagtcattatatg---aaagacacatgcatacatatgtttattagagcacaattcacaattgcaaagatacaaaagcaacctaagtgtccattgac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121039754 146 - 195804263 atctaccattcaatccagcaatcccactactgaatatctactcaaaggacaagaagtcattatatg---aaagacacatgcatacatatgtttattacagcacaattcacaattgcaaagatacaaaagcaacctaagtgtccattgac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4470993 148 - 17550833 atctaccattcaatccagcaatcccactactgaatatctacccaaaggacaagaagtcattatatg-aaaaagacacatgcatacatatgtctattacagcacaattcacaattgcaaagatacgaaaccaacctaagtgtccattgac i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111553060 149 - 190429646 agctaccattcaatccagcaatcccactagtgaatatctgcccaaaggacaagaagtcattatatgaaaaaagacacaggcatacgtatgtttattactgcacaattcacaattgcaaagatatgaaaccaacttaagtgtccattgac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110722245 149 - 189454096 agctaccattcaatccagcaatcccactagtgaatatctgcccaaaggacaagaagtcattatatgaaaaaagacacaggcatacgtatgtttattacagcacaattcacaattgcaaagatatgaaaccaacctaagtgtccactgac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13288731 149 + 26754465 agctaccattcaatccagcaatcccactagtgaatatctgcccaaaggacaagaagtcattatatgaaaaaagacacaggcatacgtatgtttattacagcacaattcacaattgcaaagatatgaaaccaacctaagtgtccattgac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4190006 149 - 5137665 agctaccattcaatccagcaatcccactagtgaatatctgcccaaaggacaagaagtcattatatgaaaaaagacacaggcatacgtatgtttattacagcacaattcacaattgcaaagatatgaaaccaacctaagtgtccattgac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122899882 149 - 135778131 agctaccattcaatccagcaatcccactagtgaatatctgcccaaaggacaagaagtcattatatgaaaaaagacacaggcatacgtatgtttattacagcacaattcacaattgcaaagatatgaaaccaacctaagtgtccattgac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2011728 149 + 2427316 agctaccattcaatccagcaatcccactagtgaatatctacccaaaggacaagaagtcattatatgaaaaaagacacaggcatacgtatgtttattacagcacaattcacaattgcaaagatatgaaaccaacctaagtgtccattgac i manLeu1.NW_012104388v1 C 0 C 0 s calJac3.chr3 53017483 148 - 190850796 agttaccattcaatccattcaatccactactgaatatctacccaaagaacaagaagtcattatatg-aaaaagacacatgtatacatatgtttattgtagcacaattcccaattgcaaagagatgaaaccaacctaagtgttcattgag i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8177965 148 - 15139346 atttaccattcaatccagcaatcccactactgaatatctacccaaagaacaagaagtgattacatg-aaaaacacacatgtatacatatgtttattgtagcacaattcccaattgcaaagagatgaaaccaacctaagtgttcattgac i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6961599 148 - 7304997 atttaccattcaatccagcaatcccactactgaatatctacccaaagaacaagaagtcaatatatg-aaaaagacacatgtatacatatgtttattgtagcacaattcccaattgaaaagagacgaaactcgcctaagtgttcattgac i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9379667 148 - 11631747 atttaccattcaatccagcaatcccactactgaatatctacccaaagaacaagaagtcattataag-aaaaacacacatgtatacatatgtttattgtaacacaattcccaattgcaaagagatgaaaccaacctaaatgttccttgac i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1873969 97 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786166 104 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I e otoGar3.GL873602 8612742 0 + 8790067 C e canFam3.chr13 48001500 204 + 63241923 I e nomLeu3.chr9 69343890 726 - 118206036 I e colAng1.NW_012119221v1 1294371 7143 + 1448899 I a score=788438.000000 s hg38.chr4_KI270787v1_alt 61783 116 + 111943 tgatgagtggatgaagaaaatatggcatctatatatacacccac-------------ggaatactcttcagccataaaaagg-aacaaaataatgtcttttgcagcaactattaatcgtgcctgtaatcc s panTro5.chr4 119626475 116 - 194502333 caatgagtggatgaagaaaatatggcatctatatatacacccac-------------agaatactcttcagccataaaaagg-aacaaaataatgtcttttgcagcaactattaatcgtacctgtaatcc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121039900 116 - 195804263 caatgagtggatgaagaaaatatggcatctatatatacacccaa-------------ggaatactcttcagccataaaaagg-aacaaaataatgtcttttgcagcaactattaatcgtacctgtaatcc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4471141 116 - 17550833 caatgagtggatgaagaaaatatggcatgtatatatacacccac-------------ggaatactcttcagccataaaaagg-aacaaaataatgtcttttgcagcaactattaatcgtgtctgtaatcc i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111553209 113 - 190429646 caatgagtggataaagagaatgtgg----tatatatacacctgt-------------ggaatactcctcagccataaaaaggaaaaaaaataatgtcttttgcagcaactagtaattgtgcgtgtaatcc i rheMac8.chr5 C 0 I 16 s macFas5.chr5 110722394 113 - 189454096 caatgagtggataaagaaaatgtgg----tatatatacacctgt-------------ggaatactcctcagccataaaaaggaaaaaaaataatgtcttttgcagcaactagtaattgtgcgtgtaatcc i macFas5.chr5 C 0 I 16 s macNem1.NW_012012466v1 13288880 113 + 26754465 caatgagtggataaagaaaatgtgg----tatatatacacctgt-------------ggaatactcctcagccataaaaaggaaaaaaaataatgtcttttgcagcaactagtaattgtgcgtgtaatcc i macNem1.NW_012012466v1 C 0 I 16 s cerAty1.NW_012001307v1 4190155 113 - 5137665 caatgagtggataaagaaaatgtgg----tatatatacacctgt-------------ggaatactcctcagccataaaaaggaaaaaaaataatgtcttttgcagcaactagtaattgtgcgtgtaatcc i cerAty1.NW_012001307v1 C 0 I 16 s chlSab2.chr7 122900031 113 - 135778131 caatgagtggataaagaaaatgtgg----tatatatacacccgc-------------agaatactcctcagccataaaaaggaaaaaaaataatgtcttttgcagcaactagtaatcgtgtgtgtaatcc i chlSab2.chr7 C 0 I 16 s manLeu1.NW_012104388v1 2011877 113 + 2427316 caatgagtggataaagaaaatgtgg----tatatatacacctgc-------------agaatactcctcagccataaaaaggaaaaaaaataatgtcttttgcagcaactagtaattgtgcgtgtaatcc i manLeu1.NW_012104388v1 C 0 I 16 s calJac3.chr3 53017631 114 - 190850796 caatgagtgaataaagaaaatgtgg--tatatatatacacccat-------------ggaatactcctcatccataaaaaga-aacaaaacaatgtctgctgcaggaattagtaatcgtgtctgtaatcc i calJac3.chr3 C 0 I 16 s saiBol1.JH378162 8178113 114 - 15139346 caatgagtgaataaagaaaatgtgg--tatatatatacacccat-------------ggaatactcttcatccataaaaagg-aaaaaaataatgtcttctgcagcaactagtaatcatgtctgtaatcc i saiBol1.JH378162 C 0 I 16 s cebCap1.NW_016107439v1 6961747 114 - 7304997 cgatgagtgaataaagaaaatgtgg--tatatatgtacacccat-------------ggaatactcctcatccataaaaagg-aacaaaatattgtcttctgcagcaactagtaatcgtttctataatcc i cebCap1.NW_016107439v1 C 0 I 16 s aotNan1.NW_018493494v1 9379815 116 - 11631747 tgatgagtgaataaagaaaatgtggtatatatatatacacccat-------------ggaatactcctcagccataaaaagg-aacaaaataatgtcttctgcagcaactagtaatcatgtctgtaatcc i aotNan1.NW_018493494v1 C 0 I 16 s canFam3.chr13 48001704 110 + 63241923 tgatgaatggataaag---atgtgc----tacacacacacacacacacacacacacaggaata----ttacccataaaaaat-ga------aatgccactttcaacaac--atgggtaggtctagagagc i canFam3.chr13 I 204 C 0 e proCoq1.NW_012140747v1 1873969 97 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786166 104 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I e otoGar3.GL873602 8612742 0 + 8790067 C e nomLeu3.chr9 69343890 726 - 118206036 I e colAng1.NW_012119221v1 1294371 7143 + 1448899 I a score=226500.000000 s hg38.chr4_KI270787v1_alt 61899 24 + 111943 atttttctaagtgaagtaactcag s panTro5.chr4 119626591 24 - 194502333 atttttctaagtgaagtaactcag i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040016 24 - 195804263 atttttctaagtgaagtaactcag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4471257 24 - 17550833 atttttctaagtgaagtaactcag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69344616 24 - 118206036 ATTCTTGtaagtgaagtaactcaa i nomLeu3.chr9 I 726 C 0 s rheMac8.chr5 111553338 24 - 190429646 atttttctaaatgaagtaactcaa i rheMac8.chr5 I 16 C 0 s macFas5.chr5 110722523 24 - 189454096 atttttctaaatgaagtaactcaa i macFas5.chr5 I 16 C 0 s macNem1.NW_012012466v1 13289009 24 + 26754465 atttttctaaatgaagtaactcaa i macNem1.NW_012012466v1 I 16 C 0 s cerAty1.NW_012001307v1 4190284 24 - 5137665 atttttctaaatgaagtaactcaa i cerAty1.NW_012001307v1 I 16 C 0 s chlSab2.chr7 122900160 24 - 135778131 atttttctaagtgacgtaactcaa i chlSab2.chr7 I 16 C 0 s manLeu1.NW_012104388v1 2012006 24 + 2427316 atttttctaaatgaagtaactcaa i manLeu1.NW_012104388v1 I 16 C 0 s calJac3.chr3 53017761 24 - 190850796 gtttctctaagtgaagtaactcaa i calJac3.chr3 I 16 C 0 s saiBol1.JH378162 8178243 24 - 15139346 gtttttctaagtgaagtaactcaa i saiBol1.JH378162 I 16 C 0 s cebCap1.NW_016107439v1 6961877 24 - 7304997 gtttttctaagtgaagtaactcag i cebCap1.NW_016107439v1 I 16 C 0 s aotNan1.NW_018493494v1 9379947 24 - 11631747 atttttctaagtgaagtaactcaa i aotNan1.NW_018493494v1 I 16 C 0 s canFam3.chr13 48001814 24 + 63241923 ataatgctaagtgaagtaagtcag i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1873969 97 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786166 104 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I e otoGar3.GL873602 8612742 0 + 8790067 C e colAng1.NW_012119221v1 1294371 7143 + 1448899 I a score=2993522.000000 s hg38.chr4_KI270787v1_alt 61923 308 + 111943 taatagaaaactaaataccgtatgttcttgattgtaagtggaagatgagctgt-----gagtatgcaaaggcatacaaagtgatgtaatgaacttt-----------------------------ggata--tagtag-----gaggagggtgggagtggagtgaggga-ta-----------aa--gaaaaactacacatgggtac-aatgtacactacttgggtgacaagcgcactaaaatctcagaattcactactacataattcatccatgtaaccaa-aaaccacttggaccccaaaagttattgaaat--aaaaaTATATTTAAAAAATAATAAAGTGGTAGGAATATAGAC--AACTCACTG s panTro5.chr4 119626615 308 - 194502333 taatagaaaactaaataccgtatgttcttgcttgtaagtggaagataagctgt-----gagtatgcaaaggcatacaaagtgatgtaatgaacttt-----------------------------ggatg--tagtag-----gaggagggtgggagtggagtgaggga-ta-----------aa--gaaaaactacacatgggtac-aatgtacactacttgggtgacaagtgcactgaaatctcagaatccactactatataattcatccatgtaaccaa-aaaccacttggaccccaaaagttattgaaat--aaaaaTATATTTAAAAAATAATAAAGTGGTAGGAATATAGAC--AACTCACTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040040 308 - 195804263 taatagaaaaccaaataccgtatgttcttgcttgtaagtggaagataagctgt-----gagtatgcaaaggcatacaaagtgatgtaatgaacttt-----------------------------ggatg--tagtag-----gaggagggtgggagtggagtgaggga-ta-----------aa--gaaaaactacacatgggtac-aatgtacactacttgggtgacaagtgcactaaaatctcagaattcactactatataattcatccatgtaaccaa-aaaccacttggaccccaaaagttattgaaat--aaaaaTATATTTAAAAAATAATAAAGTGGTAGGAATATAGAC--AACTCACTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4471281 308 - 17550833 taatagaaaactaaataccgtatgttcttgcttgtaagtggaagataagctgt-----gagtatgcaaaggcatacaaagtgatgtaatgaacttt-----------------------------ggata--tggtag-----gaggagggtgggagtggagtgaggga-ta-----------aa--gaaaaactacacatgggtac-aatgtacattacttgggtgacaagtgcactaaaatctcagaattcactactatataattcatccatgtaaccga-aaaccacttggaccccaaaagttattgaaat--aaaaaTATATTTAAAAAATAATAAAGTGGTAGGAATATAGAC--AACTCACTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69344640 309 - 118206036 taatagaaaattaaataccgtatgttcttgcttataagtgagagataagctgt-----gagtatgcaaaggcatacagagtgatgtaatgaacttt-----------------------------gggta--cagtag-----gaggagggtgggagtggagtgagggattt-----------aa--aaaaaactacacgtaggtac-aatgtacactacttggttgacaagtgcactaaaatctcagaattcactactatataattcatccatgtaaccaa-aaaccacttgtaccccaaaagttattgaaat--aaaaaCATATTTAAAAAATAATAAAGTGGTAGGAATATAGAC--AACTCACTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111553362 309 - 190429646 taatagaaaactaaatactgtatattgttgcttataagtgggagataagctgt-----gagtatgcaaaggcatacgcagtgatgtaatgaacttt-----------------------------ggatactcagtag-----gaggagggtgggagtggagtgaggga-t-------------a--aaaaaactacacctgggtac-aatgtacactacttgggtgacaagtgcactaaaatctcagaattcactactatataattcatccatgtaaccaa-aaaccacttgtaccccaaaagttattgaaat---aaaaCATATTTTAAAAATAATAAAGTGCTGGGAATATAGACTTAACTCACTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110722547 309 - 189454096 taatagaaaactaaatactgtatattgttgcttataagtgggagataagctgt-----gagtatgcaaaggcatacgcagtgatgtaatgaacttt-----------------------------ggatactcagtag-----gaggagggtgggagtggagtgaggga-t-------------a--aaaaaactacacctgggtac-aatgtacactacttgggtgacaagtgcactaaaatctcagaattcactactatataattcatccatgtaaccaa-aaaccacttgtaccccaaaagttattgaaat---aaaaCATATTTTAAAAATAATAAAGTGCTGGGAATATAGACTTAACTCACTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13289033 309 + 26754465 taatagaaaactaaatactgtatattgttgcttataagtgggagataagctgt-----gagtatgcaaaggcatacgcagtgatgtaatgaacttt-----------------------------ggatactcagtag-----gaggagggtgggagtggagtgaggga-t-------------a--aaaaaactacacatgggtac-aatgtacactacttaggtgacaagtgcactaaaatctcagaattcactactatataattcatccatgtaaccaa-aaaccacttgtaccccaaaagttattgaaat---aaaaCATATTTTAAAAATAATAAAGTGCTGGGAATATAGACTTAACTCACTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4190308 309 - 5137665 taatagaaaactaaatactgtatattgttgcttataagtgggagataagctgt-----gagtatgcaaaggcatacgcagtgatgtaatgaacttt-----------------------------ggatactcagtag-----gaggagggtgggagtggagtgaggga-t-------------a--aaaaaactacacatgggtac-aatgtacactacttgggtgacaagtgcactaaaatctcagaattcactactatataattcatccatgtaaccaa-aaaccacttgtaccccaaaagttattgaaat---aaaaCATATTTTAAAAATAATAAAGTGCTGAGAATATAGACTTAACTCACTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122900184 309 - 135778131 taatagaaaactaaacaccgtatattgttgcttataagtgggagataagctgt-----gagtatgcaaaggcatacgcagtgatgtaatgaacttt-----------------------------ggatactcagtag-----gaggagggtgggagtggagtgaggga-t-------------a--aaaaaactacacatgggtac-aatgtacactacttgggtgacaagtgcactaaaatctcagaattcactactatataattcatccatgtaaccaa-aaaccacttgtaccccaaaagttattcaaat---aaaaCATATTTTAAAAATAATAAAGTGCTGGGAATATAGACTTAACTCACTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2012030 310 + 2427316 taatagaaaactaaatactgtatattgttgcttataagtgggagataagctga-----gagtatgcaaaggcatacgcagtgatgtaatgaacttt-----------------------------ggatactcagtag-----gaggagggtgggagtggagcgaggga-t------------aa--aaaaaactacacatgggtac-aatgtacactacttgggtgacaagtgcactaaaatctcagaattcactactatataattcatccatgtaaccaa-aaaccacttgtaccccaaaagttattgaaat---aaaaCATATTTTAAAAATAATAAAGTGCTGGGAATATAGACTTAACTCACTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1301514 311 + 1448899 Taatagaaaactaaataccgtatattcttgcttttaagtgggagataagctgt-----gagtatgcaaaggcatacacagtgatgtaatgaacttt-----------------------------ggatactcagtag-----aaggagggtgggagtggagtgaggga-t------------aa--aaaaaactacacatgggtactcctgtacactacttgggtgacaagtgcactaaaatctcagaattcactactatataattcatccatgtaaccaa-aaaccacttgtaccccaaaagttatggaaat---aaaaCATACTTTAAAAATAATAAAGTGCTAGGAATATAGACTTAACTCACTG i colAng1.NW_012119221v1 I 7143 C 0 s calJac3.chr3 53017785 311 - 190850796 taatagaaaactaaataccatatgttcttgcttataagtgggagataagctgt-----gagtatgcaaaggcatacagaatgatgtaatgaacttc-----------------------------ggagattcagtag-----gaggagggtgggagtggagtgaggga-ta-----------aa--aaaaaactacacatgggtac-agtgtacactacttgggtgacaggtgcaccaaaatctcagaattcactactatataattaatccatgtaa-cca-aaaccacttgtatcccaaaagttattaaaat--aaaaaCATATTTAAAAATTAATTAAGTGGTAGGCATATAGACTTAACTCATTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8178267 312 - 15139346 taatagaaaactaaataccatatgttcttgcttataagtgggagataagctgt-----gagtatgcaaaggcatacagaatgatgtaatgaacttt-----------------------------ggagattcagtag-----gaggagggtgggagtggcgtgaggga-ta-----------aaataaaaaactacacatgggtac-aatgtacactacttgggtgacaggtgcactaaaatctcaggattcactactatataattcatccacgtaaccca-aaaccacttgtatcccaaaagctattaaaat--aaaaaCATATTTCAAAAATAATTAAGTGGTAGGAATATAGAC--AACTCATTG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6961901 310 - 7304997 taatagaaaactaaataccatatgttcttgcttataagtgggaaataagctgt-----gagtatgcaaaggcatacagaatgatgtaatgaacttt-----------------------------ggagattcagtag-----gaggagggtgggagtggagtaaggga-tt-----------aa--aaataactacacatgggtac-aatgtacactacttgggtgacaggtgcactaaaatctcagaattcactactatataattcatccatgtaaccaa-aaactacttgtatcccaaaagttattaaaat--gaaaaC--ATTTAAAAAATAATTAAGTGGTAGGAATATAGACTTAACTCATTG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9379971 312 - 11631747 taatagaaaactaaataccatatgttcttgcttataagtgggagataagctgt-----gagtatgcaaaggcatatagaatgatgaaatgaacttt-----------------------------ggagattcagtag-----gaggagggtgggagtggagtgaggga-tt-----------aa--aaaaaactacacgtgggtac-aatatacattacttgggtgagatgtgcactaaaatctcagaattcactactatataattcatccatgtaaccaa-aaaccacttgtatcccaaaagttattaaaat--aaaaaCACATTTAAAAAATAATTAAGTGGTAGGAATATAGACTTAACTCATTG i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48001838 336 + 63241923 ----agaaagacaaataccatgtcactttactcatatatggaatttaaggaataaaacaaatgaacaaaggaaaaagagacaaaaaaatagactcttaaatacagagaacaaactgatggttgccagatggcaagtggatgaagaggaaggaggcaggggaatgagtga-aacaggtggagggaa--ttaagagtacactta-ttgc-gatgagcac----tgagtaatata-----tagaattgctgaat----tgttatattgtacacc--tgaaactaatataacact---gtgttaatgatacttgaactttaaaaataaattttttaaa-----aaGTG-TGGGAATTTGCACTTCATTCACTG i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1873969 97 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786166 104 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I e otoGar3.GL873602 8612742 0 + 8790067 C a score=1190742.000000 s hg38.chr4_KI270787v1_alt 62231 113 + 111943 GATGATACAACATGAGTAAAGAATAAGTCTGAGGATAAAATCCACTCTGTTCTCTGAACAAACGACTTTTATTATTCCCAAGGATCTCT-ATCGCCTCTCACACTCTGAATCCA s panTro5.chr4 119626923 113 - 194502333 GATGATACAACATGAGTAAAGAATAAGTCTGAGGATAAAATCCACTCTGTTCTCTGAACAAACGACTTTTATTATTCCCAAGGATCTCT-ATCGCCTCTCACACTCTGAATCCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040348 113 - 195804263 GATGATACAACATGAGTAAAGAATAAGTCTGAGGATAAAATCCACTCTGTTCTCTGAACAAACGACTTTTATTATTCCCAAGGATCTCT-ATCGCCTCTCACACTCTGAATCCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4471589 113 - 17550833 GATGATACAATATGAGTAAAGAATAAGTCTGAGGATAAAATCCACTCTGTTCTCTGAACAAACGACTTTTATTATTCCCAAGGATCTCT-ATCGCCTCTCACACTCTGAATCCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69344949 113 - 118206036 GATGATACAACATGAGTAAAGAATAAGTCTGAGGATAAAATCCACTCTGTTCTCTGAACAAACGACTTCTATTATTCGCAAGGATCACT-ATCACCTCTCACACTCTGAATCCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111553671 113 - 190429646 GATGATACAATATGAGTAAAGAGTAAGTCTGAGGATAAAATTCACTCTGTTCTCTGAACAAATGACTTTTATTATTCCCAAGGATCTAT-ATCACCTCTCACACTCTGAATCCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110722856 113 - 189454096 GATGATACAATATGAGTAAAGAATAAGTCTGAGGATAAAATTCACTCTGTTCTCTGAACAAATGACTTTTATTATTCCCAAGGATCTAT-ATCACCTCTCACACTCTGAATCCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13289342 113 + 26754465 GATGATACAATATGAGTAAAGAATAAGTCTGAGGATAAAATTCACTCTGTTCTCTGAACAAACGACTTTTATTATTCCCAAGGATCTAT-ATCACCTCTCACACTCTGAATCCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4190617 113 - 5137665 GATGATACAATATGAGTAAAGAATAAGTCTGAGGATAAAATTCACTCTGTTCTCTGAACAAACGACTTTTATTATTCCCAAGGATATAT-ATCACCTCTCACACTCTGAATCCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122900493 113 - 135778131 GATGATACAATATGAGTAAAGAATAAGTCTGAGGATAAAATCCACTCTGTTCTCTGAACAAATGACTTTTATTATTCCCAAGGATCTCT-ATCACCTCTCACACTCTGAATCCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2012340 113 + 2427316 GATGATACAATATGAGTAAAGAATAAGTCTGAGGATAAAATTCACTCTGTTCTCTGAACAAACGACTTTTATTATTCCCAAGGATATAT-ATCACCTCTCACACTCTGAATCCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1301825 113 + 1448899 GATGATACAATATGAGTAAAGAATAAGTCTGAGGATAAAATCCACTCAGTTCTCTGAACAAATGACTTGTATTATTCCCAAGGATCTCT-ATCACCTCTCACACTCTGAATCCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53018096 106 - 190850796 GATGATAC-----GAGTAAAGAATAAGTCTGAGGCTAAAATCTACTCCGTTCTCTGAACAAATGACTTGTATTATTCTCAAGGATCTCT-ATCACCTCTCAAA--CTGAATCCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8178579 102 - 15139346 GATGATAC-----GAGTAAAGCATAAGTCTGAGGCTAAAATCTACTCTGTTCTCGGAACAAATG------ATTATTCTCAAGGATCTCT-ATCACCTCTCAAACTCTGAATCCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6962211 108 - 7304997 GATGGTAC-----GAGTAAAGAATACGTCTGAGGCTAAAATCTACTCTGTTCTCTGAACAAATGACTTTTATTATTCTCAAGGATCTCT-ATCACCTCTCAAACTCTGAATCCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9380283 108 - 11631747 GATGATAC-----GAGTAAAGAATAAGTCTGAGGCTAAAATCTACTCTGTTCTTTGAACAAATGATTTTTATTATTCTTAAGGATCTCT-ATCACCTCTCAAACTCTGAATCCA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8612742 112 + 8790067 GATTATAGAATATAAGTAAAAAGCA-GTGTGAGGCTCGAACCCAGTGTACACTGTGAGCAAGTGATTGTCACTGTTCCTGTGGACCTCT-ACCAACTCTCAGTCTACGAGTTCA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48002174 110 + 63241923 GATGATACAATGTGAATAAGCA----GTCTGCATCTAAAATCTGCCTGAGATCCCAAATAAATCACTTTTGCCATGTCTAAGGACTTCTAACCACCTCTCAATCAGTCAGTCTA i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1873969 97 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786166 104 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=50153.000000 s hg38.chr4_KI270787v1_alt 62344 7 + 111943 ---CATTATC s panTro5.chr4 119627036 7 - 194502333 ---CATTATC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040461 7 - 195804263 ---CATTATC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4471702 7 - 17550833 ---CATTATC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69345062 7 - 118206036 ---CAGTATC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111553784 7 - 190429646 ---CATTATC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110722969 7 - 189454096 ---CATTATC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13289455 7 + 26754465 ---CATTATC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4190730 7 - 5137665 ---CATTATC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122900606 7 - 135778131 ---CATTATC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2012453 7 + 2427316 ---CATTATC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1301938 7 + 1448899 ---CATTATC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53018202 5 - 190850796 ---CAT--TC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8178681 5 - 15139346 ---CAT--TC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6962319 5 - 7304997 ---CAT--TC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9380391 5 - 11631747 ---CAT--TC i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1874066 7 + 4188776 ---CATTATA i proCoq1.NW_012140747v1 I 97 C 0 s otoGar3.GL873602 8612854 7 + 8790067 ---CATTATC i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48002284 7 + 63241923 TGTCATT--- i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1786166 104 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=497576.000000 s hg38.chr4_KI270787v1_alt 62351 37 + 111943 -TACCCCCATTCTTGACATAATCACATCACAGGATCAT s panTro5.chr4 119627043 37 - 194502333 -TACCCCCATTCTTGACATAATCACATCACAGGATCAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040468 37 - 195804263 -TACCCCCATTCTTGACATAATCACATCACAGGATCAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4471709 37 - 17550833 -TACTCCCATTCTTGACATAATCACATCACAGGATCAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69345069 37 - 118206036 -TATCCCCATTCTTGACATAATCACATCACAGGATCAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111553791 37 - 190429646 -TACCCCCATTCTTGACATAATTACATCACAGGATCAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110722976 37 - 189454096 -TACCCCCATTCTTGACATAATTACATCACAGGATCAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13289462 37 + 26754465 -TACCCCCATTCTTGACATAATTACATCACAGGATCAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4190737 37 - 5137665 -TACCCCCATTCTTGACATAATTACATCACAGGATCAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122900613 37 - 135778131 -TACCCCCATTCTTGACATAATTACATCACAGGATCAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2012460 37 + 2427316 -TACCCCCATTCTTGACATAATTACATCACAGGATCAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1301945 37 + 1448899 -TACCCCCATTCTTGACATAATTACATCACAGGATCAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53018207 37 - 190850796 -TACCCCTATTATTGACATAATCACATCATAGGATCAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8178686 37 - 15139346 -TACCCCTATTATTGACATAATCACATCACGGAATCAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6962324 37 - 7304997 -TACCCCTATTATTGACATAATCACATCACAGGATCAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9380396 37 - 11631747 -TACCCCGATTATTGACATAATCACATCACAGGATCAT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1786270 34 + 3286835 -TACCCCCATTCCTGCCATAATCACATCACAGTAT--- i micMur3.chrUn_NW_017968520v1 I 104 C 0 s proCoq1.NW_012140747v1 1874073 37 + 4188776 -TACCCCTATTCCTGACATAATCACATCACAGTATCAT i proCoq1.NW_012140747v1 C 0 I 13 s otoGar3.GL873602 8612861 36 + 8790067 --TCCTCCACTCCTGACATAAACACTTTACACTACCAT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48002291 34 + 63241923 ATCCCCCGTTACTTCACAGAG----ACTACAGGATCAT i canFam3.chr13 C 0 C 0 e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=1373859.000000 s hg38.chr4_KI270787v1_alt 62388 110 + 111943 ATAAAATTGAGATATCCTGGCAGTGACCTTTTATCCATGAGAATGA-CGTTTGTCTTGAAATAATCTGAGGTTCAGATTTTGGCTCCAATGAGAAGCTGCTGAGCAAAGCT s panTro5.chr4 119627080 110 - 194502333 ATAAAATTGAGATATCCTGGCAGTGACCTTTTATCCATGAGAATGA-CGTTTGTCTTGAAATAATCTGAGGTTCAGATTTTGGCTCCAATGAGAAGCTGCTGAGCAAAGCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040505 110 - 195804263 ATAAAATTGAGATATCCTGGCAGTGACCTTTTATCCATGAGAATGA-CGTTTGTCTTGAAATAATCTGAGGTTCAGATTTTGGCTCCAATGAGAAGCTGCTGAGCAAAGCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4471746 110 - 17550833 ATAAAATTGAGATATCCTGGCAGTGACCTTTTATCCATGAGAATGA-CGTTTGTCTTGAAATAATCTGAGGTTCAGATTTTGGCTCCAATGAGAAGCTGCTGAGCAAAGCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69345106 110 - 118206036 ATAAAATTGAGATATCCTGGCAGTGGCCTTTTATCCATGGGAATGA-CCTTTGTCTTTAAATAATCTGAGGTTCAGATTTTGGCTCCAATGAGAAGCTGCTGAGCAAAGCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111553828 110 - 190429646 ATAAAATTGAGATATCCTGGCAGTGACCTTTTATCCATGGAAATGA-CATTTGTCTTGAAATAATCTAAGGTTCTGATTTTGGCTCCAATGAGAAGCTGCTGAGCAAAGCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110723013 110 - 189454096 ATAAAATTGAGATATCCTGGCAGTGACCTTTTATCCATGGAAATGA-CATTTGTCTTGAAATAATCTAAGGTTCTGATTTTGGCTCCAATGAGAAGCTGCTGAGCAAAGCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13289499 110 + 26754465 ATAAAATTGAGATATCCTGGCAGTGACCTTTTATCCGTGGAAATGA-CATTTGTCTTGAAATAATCTAAGGTTCCGATTTTGGCTCCAATGAGAAGCTGCTGAGCAAAGCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4190774 110 - 5137665 ATAAAATTGAGATATCCTGGCAGTGACCTTTTATCCATGGAAATGA-CATTTGTCTTGAAATAATCTGAGGTTCCGATTTTGGCTCCAATGAGAAGCTGCTGAGCAAAGCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122900650 110 - 135778131 ATAAAATTGAGATATCCTGGCAGTGACCTTTTATCCATGAGAATGA-CATTTGTCTTGAAATAATCTGAGGTTCTGATTTTAACTCCAATGAGAAGCTGCTGAGCAAAGCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2012497 110 + 2427316 ATAAAATTGAGATATCCTGGCAGTGACCTTTTATCCATGGAAATGA-CATTTGTCTTGAAATAATCTGAGGTTCCAATTTTGGCTCCAATGAGAAGCTGCTGAGCAAAGCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1301982 110 + 1448899 ATAAAATTGAGATATCCTGGCAGTGACCTTTTATCCATGCGAATGA-CATTTGTCTTGAAATAATCTGAGGTTCCAATTTTGGCTCCAATGAGAAGCTGCTGAGCAAAGCT i colAng1.NW_012119221v1 C 0 I 6083 s calJac3.chr3 53018244 110 - 190850796 AGAAAATTGAGATATCCTGGCAGTGACCTTTAATTCATGTGAATGA-CATTTGCCTTGAAATAATCTGAGATTCAGATTTTGGCTCCAGTGAGGAGCAGCTGAGCAAAGCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8178723 110 - 15139346 AGAAAATTGAGATATCCTGGCAGTGACCTTTAATTCATGTGAATGA-CATTTGCCTTGAAATAATCTGAGATTCAGATTTTGGCTCCAACGAGGAGCAGCTGAGCAAAGCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6962361 110 - 7304997 AGAAAATTGAGATATCCTGGCAGTGACCTTTAATTCATATGAATGA-CATTTGCCTTGAAATAATCTGAGATTCTGATTTTGGCTCCAATGAGGAGCAGCTGAGCAAAGCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9380433 110 - 11631747 AGAAAACTGAGATATCCTGGCAATGACCTTTAATTCATGTGAATGA-CATTTGCCTTGAAATTATCTGAGATTCAGATTTTGGCTCCAATGAGGAGCAGCTGAGCAAAGCT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1786304 111 + 3286835 GGAGAATTGAGATGTGCTGGCAGCGGCTTTTTATCCCAGTGAATGACCATTTGCCTTGAAATAATCCAAGGTTCAGATTTTGGCTCCAGTGAGAAGCAGTTGAACAGAGCT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8612897 98 + 8790067 -------------GTTCTAGCAGTGCCTTTTTATCCTGGTGAATGACCATTTGCCTTGAAATAATCTGAACCTCAGATTATGGCTCCAATGAGAAGCACCTGAGAGGATCC i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48002325 109 + 63241923 GGGGAATTAGGATGTCCTAGAAGTAGCCTTC-ATCCCTGTGACTGTCCACATGTTTTGAAATAACCC-AGGTTCAGACTTTGGCTCCAACTAGAAACATTTTAGTAGAGCT i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=46026.000000 s hg38.chr4_KI270787v1_alt 62498 3 + 111943 AAG s panTro5.chr4 119627190 3 - 194502333 AAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040615 3 - 195804263 AAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4471856 3 - 17550833 AAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69345216 3 - 118206036 AAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111553938 3 - 190429646 AAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110723123 3 - 189454096 AAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13289609 3 + 26754465 AAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4190884 3 - 5137665 AAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122900760 3 - 135778131 AAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2012607 3 + 2427316 AAG i manLeu1.NW_012104388v1 C 0 I 313 s colAng1.NW_012119221v1 1308175 3 + 1448899 AAG i colAng1.NW_012119221v1 I 6083 C 0 s calJac3.chr3 53018354 3 - 190850796 AAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8178833 3 - 15139346 AAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6962471 3 - 7304997 AAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9380543 3 - 11631747 AAG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1786415 3 + 3286835 AAG i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8612995 3 + 8790067 AAG i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48002434 3 + 63241923 AGG i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=353109.000000 s hg38.chr4_KI270787v1_alt 62501 27 + 111943 AAAAGCAGTTATAGAGTTTATAGGCTT s panTro5.chr4 119627193 27 - 194502333 AAAAGCAGTTATAGAGTTTATAGGCTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040618 27 - 195804263 AAAAGCAGTTATAGAGTTTATAGGCTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4471859 27 - 17550833 AAAAGCAGTTATAGAGTTTATAGGCTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69345219 27 - 118206036 AAAAGCAGTTATAGAGTTTATAGGCTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111553941 27 - 190429646 AAAAGCAGTTATAGAGTTTATAGGCTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110723126 27 - 189454096 AAAAGCAGTTATAGAGTTTATAGGCTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13289612 27 + 26754465 AAAAGCAGTTATAGAGTTTATAGGCTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4190887 27 - 5137665 AAAAGCAGTTATAGAGTTTATAGGCTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122900763 27 - 135778131 AAAAGTAGTTATAGAGTTTACAGGCTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2012923 27 + 2427316 aaaaGCAGTTATAGAGTTTATAGGCTT i manLeu1.NW_012104388v1 I 313 C 0 s colAng1.NW_012119221v1 1308178 27 + 1448899 AAAAGCAGTTATAGAGTTTATAGGCTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53018357 27 - 190850796 AAAAGCAGCTATGGAGTTTATAGGCTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8178836 27 - 15139346 AAAAGCAGCTGTGGAGTTTATAGGCTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6962474 27 - 7304997 AAAAGCAGCTATGGAATTTATAGGCTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9380546 27 - 11631747 AAAAGCAGCTATGGAGTTTATAGGCTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1786418 27 + 3286835 AAAAGCTGCCATGGGGTTTATAGGCTT i micMur3.chrUn_NW_017968520v1 C 0 I 23 s otoGar3.GL873602 8612998 24 + 8790067 GACAGCT---ATGGGGCTTATAGGCTT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48002437 27 + 63241923 AAAAACAGCTGTGAGGCTTAGGGGCTT i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=95931.000000 s hg38.chr4_KI270787v1_alt 62528 10 + 111943 CAGATGTGTA s panTro5.chr4 119627220 10 - 194502333 CAGATGTGTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040645 10 - 195804263 CAGATGTGTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4471886 10 - 17550833 CAGATGTGTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69345246 10 - 118206036 CAGATTTGTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111553968 10 - 190429646 CAGATTAGTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110723153 10 - 189454096 CAGATTAGTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13289639 10 + 26754465 CAGATTAGTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4190914 10 - 5137665 CAGATTAGTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122900790 10 - 135778131 CAGATTCGTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2012950 10 + 2427316 CAGATTAGTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1308205 10 + 1448899 CAGATTAGTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53018384 10 - 190850796 CAGATTTGTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8178863 10 - 15139346 CAGATTTGTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6962501 10 - 7304997 CAGATTTGTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9380573 10 - 11631747 CAGATTTGTA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8613022 10 + 8790067 GAGTTTTGTA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48002464 9 + 63241923 -GAAGTTGCA i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786445 23 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094329 8 - 5279953 I a score=42233.000000 s hg38.chr4_KI270787v1_alt 62538 4 + 111943 CTGT s panTro5.chr4 119627230 4 - 194502333 CTGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040655 4 - 195804263 CTGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4471896 4 - 17550833 CTGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69345256 4 - 118206036 CTGT i nomLeu3.chr9 C 0 I 9 s rheMac8.chr5 111553978 4 - 190429646 CTGT i rheMac8.chr5 C 0 I 9 s macFas5.chr5 110723163 4 - 189454096 CTGT i macFas5.chr5 C 0 I 9 s macNem1.NW_012012466v1 13289649 4 + 26754465 CTGT i macNem1.NW_012012466v1 C 0 I 9 s cerAty1.NW_012001307v1 4190924 4 - 5137665 CTGT i cerAty1.NW_012001307v1 C 0 I 9 s chlSab2.chr7 122900800 4 - 135778131 CTGT i chlSab2.chr7 C 0 I 9 s manLeu1.NW_012104388v1 2012960 4 + 2427316 CTGT i manLeu1.NW_012104388v1 C 0 I 9 s colAng1.NW_012119221v1 1308215 4 + 1448899 CTGT i colAng1.NW_012119221v1 C 0 I 9 s calJac3.chr3 53018394 4 - 190850796 CTGT i calJac3.chr3 C 0 I 9 s saiBol1.JH378162 8178873 4 - 15139346 CTGG i saiBol1.JH378162 C 0 I 9 s cebCap1.NW_016107439v1 6962511 4 - 7304997 CTGG i cebCap1.NW_016107439v1 C 0 I 9 s aotNan1.NW_018493494v1 9380583 4 - 11631747 CTGG i aotNan1.NW_018493494v1 C 0 I 9 s otoGar3.GL873602 8613032 4 + 8790067 CTAC i otoGar3.GL873602 C 0 I 9 s canFam3.chr13 48002473 4 + 63241923 TTGC i canFam3.chr13 C 0 I 5 s dasNov3.JH568349 4094337 4 - 5279953 CTTC i dasNov3.JH568349 I 8 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786445 23 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I a score=391167.000000 s hg38.chr4_KI270787v1_alt 62542 27 + 111943 CAGATTAATCCATATTTAAGTTTAAAA s panTro5.chr4 119627234 27 - 194502333 CAGATTAATCCGTATTTAAGTTTAAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040659 27 - 195804263 CAGATTAATCTGTATTTAAGTTTAAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4471900 27 - 17550833 CAGATTAATCCATATTTAAGTTTAAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69345269 27 - 118206036 CAGATTAATCCATATTTAAGTTTAAAA i nomLeu3.chr9 I 9 C 0 s rheMac8.chr5 111553991 27 - 190429646 CAGATTAATCCATATTTAAGTTTAAAA i rheMac8.chr5 I 9 C 0 s macFas5.chr5 110723176 27 - 189454096 CAGATTAATCCATATTTAAGTTTAAAA i macFas5.chr5 I 9 C 0 s macNem1.NW_012012466v1 13289662 27 + 26754465 CAGATTAATCCATATTTAAGTTTAAAA i macNem1.NW_012012466v1 I 9 C 0 s cerAty1.NW_012001307v1 4190937 27 - 5137665 CAGATTAATCCATATTTAAGTTTAAAA i cerAty1.NW_012001307v1 I 9 C 0 s chlSab2.chr7 122900813 27 - 135778131 CAGATTAATCCATATTTAAGTTTAAAA i chlSab2.chr7 I 9 C 0 s manLeu1.NW_012104388v1 2012973 27 + 2427316 CAGATTAATCCATATTTAAGTTTAAAA i manLeu1.NW_012104388v1 I 9 C 0 s colAng1.NW_012119221v1 1308228 27 + 1448899 CAGATTAATCCATATTTAAGTTTAAAA i colAng1.NW_012119221v1 I 9 C 0 s calJac3.chr3 53018407 27 - 190850796 Caaattaattcatatttaagtttaaaa i calJac3.chr3 I 9 C 0 s saiBol1.JH378162 8178886 27 - 15139346 CAGattaattcatatttaagtttaaaa i saiBol1.JH378162 I 9 C 0 s cebCap1.NW_016107439v1 6962524 27 - 7304997 CAGATTAATTCACATTTAAGTTTAAAA i cebCap1.NW_016107439v1 I 9 C 0 s aotNan1.NW_018493494v1 9380596 27 - 11631747 CAGATTAATTCATATTTAACTTTAAAA i aotNan1.NW_018493494v1 I 9 C 0 s micMur3.chrUn_NW_017968520v1 1786468 27 + 3286835 CAGATAAATCCATATTTAAGTTTAAAA i micMur3.chrUn_NW_017968520v1 I 23 I 69 s otoGar3.GL873602 8613045 27 + 8790067 CAGATAAATCtatatttatgttttaaa i otoGar3.GL873602 I 9 I 3 s canFam3.chr13 48002482 27 + 63241923 CAAACAAATTCATAAGTAAGTTTTAAA i canFam3.chr13 I 5 I 3 s dasNov3.JH568349 4094341 27 - 5279953 CAGACAAACGTGTATTTAAGTACAAAA i dasNov3.JH568349 C 0 I 1 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e mm10.chr5 76414125 5012 + 151834684 I a score=452249.000000 s hg38.chr4_KI270787v1_alt 62569 55 + 111943 TGT-GTAAGTT--AAATAT---------------------------------------------------------------------------------TTGGAT---------------------------------------------------------------TCTAATTTTGACCA--------------------TTT---------ATAAAA---------------------CCTACTCATT s panTro5.chr4 119627261 55 - 194502333 TGT-ATAAGTT--AAATAT---------------------------------------------------------------------------------TTGGAT---------------------------------------------------------------TCTAATTTTGACCA--------------------TTT---------ATAAAA---------------------CCTACTCATT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040686 55 - 195804263 TGT-ATAAGTT--AAATAT---------------------------------------------------------------------------------TTGGAT---------------------------------------------------------------TCTAATTTTGACCA--------------------TTT---------ATAAAA---------------------CCTACTCATT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4471927 55 - 17550833 TGT-ATAAGTT--AAATAT---------------------------------------------------------------------------------TTGGAT---------------------------------------------------------------TCTAATTTTGACCA--------------------TTT---------ATAAAA---------------------CCTACTCATT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69345296 55 - 118206036 TGT-GTAAGTT--AAATAT---------------------------------------------------------------------------------TTGGAT---------------------------------------------------------------TCTAATTTTGACTA--------------------TTT---------ATAAAA---------------------CCTACTCATT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111554018 55 - 190429646 TGT-ATAAGTT--AAATAT---------------------------------------------------------------------------------TTGGAT---------------------------------------------------------------TCTAATTTTGACCA--------------------TTT---------ATAAAA---------------------CCTACTCATT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110723203 55 - 189454096 TGT-ATAAGTT--AAATAT---------------------------------------------------------------------------------TTGGAT---------------------------------------------------------------TCTAATTTTGACCA--------------------TTT---------ATAAAA---------------------CCTACTCATT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13289689 55 + 26754465 TGT-ATAAGTT--AAATAT---------------------------------------------------------------------------------TTGGAT---------------------------------------------------------------TCTAATTTTGACCA--------------------TTT---------ATAAAA---------------------CCTACTCATT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4190964 55 - 5137665 TGT-ATAAGTT--AAATAT---------------------------------------------------------------------------------TTGGAT---------------------------------------------------------------TCTAATTTTGACCA--------------------TTT---------ATAAAA---------------------CCTACTCATT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122900840 55 - 135778131 TGT-ATAAGTT--AAATAT---------------------------------------------------------------------------------TTGGAT---------------------------------------------------------------TCTAATTTTGACCA--------------------TTT---------ATAGAA---------------------CCTACTCATT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2013000 55 + 2427316 TGT-ATAAGTT--AAATAT---------------------------------------------------------------------------------TTGGAT---------------------------------------------------------------TCTAATTTTGACCA--------------------TTT---------ATAAAA---------------------CCTACTCATT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1308255 55 + 1448899 TGT-ATAAGTT--AAATAT---------------------------------------------------------------------------------TTGGAT---------------------------------------------------------------TCTAATTTTGACCA--------------------TTT---------ATAAAA---------------------CCTACTCATT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53018434 45 - 190850796 tat------------atat---------------------------------------------------------------------------------ttGGGC---------------------------------------------------------------TCTAGTTTTGATCA--------------------TTT---------ATAAAA---------------------CCTGCTCA-T i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8178913 54 - 15139346 tat-ataagtt--aaatat---------------------------------------------------------------------------------ttGGAC---------------------------------------------------------------TCTAGTTTTGCCCA--------------------TTT---------ATAAAA---------------------CCTACTCA-T i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6962551 54 - 7304997 TAT-ATAAGTT--AAATAT---------------------------------------------------------------------------------TTGGAC---------------------------------------------------------------TCTAGTTTTGCCCA--------------------TTT---------ATAAAG---------------------CCTACTCA-T i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9380623 54 - 11631747 TAT-ATAAGTT--AAATAT---------------------------------------------------------------------------------TTGGAC---------------------------------------------------------------TCTAGTTTTGATCA--------------------TTT---------ATAAAA---------------------CCTACTCA-T i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8613075 66 + 8790067 tat-ttgagtttaaaatat---------------------------------------------------------------------------------tttatC---------------------------------------------------------------TCTAATTTTGTCAA--------------------TCTTACCCTACAATGAAA---------------------TCTACTCATC i otoGar3.GL873602 I 3 C 0 s canFam3.chr13 48002512 240 + 63241923 TAC-TTAAATT--AAAAATGCCTTAGCTCGGgggatccctgggtggcgcagcggtttagcgcctgcctttggcccagggcacgatcctggagaccccggattgaatcccacgtcgggctcccggtgcatggagcctgcttgtgtctctgcctctctctatctctctctctctctttgtgactatcataaataaataaaaattTTTT---------TTAAAATGCCTTAGCTCAAATTTTGACCATCTTCATC i canFam3.chr13 I 3 I 2 s dasNov3.JH568349 4094369 50 - 5279953 TATCTTAAACT--AAATAG------------------------------------------------------------------------------------------------------------------------------------------------------TGCTATCTTACCCT--------------------ACA---------ACAAAA---------------------CCTCTTAGTC i dasNov3.JH568349 I 1 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786495 69 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I a score=877425.000000 s hg38.chr4_KI270787v1_alt 62624 62 + 111943 TATACACCCTAGTGGGGCAACCAGAAGCACTTTACTGCTAACTGATTTAGGAAAGAT--GTTGA s panTro5.chr4 119627316 62 - 194502333 TATACACCCTAGTGGGGCAAACAGAAGCACTTTACTGCTAACTGATTTGGGAAAGAT--GTTGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040741 62 - 195804263 TATACACCCTAGTGGGGCAAACAGAAGCACTTTACTGCTAACTGATTTGGGAAAGAT--GTTGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4471982 62 - 17550833 TATACACCCTAGTGGGGCAACCAGAAGCACTTTACTGCTAACTGATTTAGGAAAGAT--GTTGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69345351 62 - 118206036 TATACACCCTAGCCGGGCAACCAGAAGCACTTTACTGCTAACTGATTTAGGAAAGCT--GTTGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111554073 62 - 190429646 TATACACCCTAGTGGGGCAACCAGAAGCACTTTACTGCTAACTGATTTAGGAAAGAT--GTTGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110723258 62 - 189454096 TATACACCCTAGTGGGGCAACCAGAAGCACTTTACTGCTAACTGATTTAGGAAAGAT--GTTGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13289744 62 + 26754465 TATACACCCTAGTGGGGCAACCGGAAGCACTTTACTGCTAACTGATTTAGGAAAGAT--GTTGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4191019 62 - 5137665 TATACACCCTAGTGGGGCTACCAGAAGCACTTTACTGCTAACTGATTTAGGAAAGAT--GTTGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122900895 62 - 135778131 TATACACCTTAGTGGGGCAACCAGAAGCACTTTACTGGTAACTGATTTAGGAAAGAT--GTTGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2013055 62 + 2427316 TATACACCCTAGTGGGGCAACCAGAAGCACTTTACTGCTAACTGATTTAGGAAAGAT--GTTGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1308310 62 + 1448899 TATACACCCTAGTGGGGCAACCAGAAGCACTTTACTGCTAACTGATTTAGGAAAGAT--GTTGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53018479 61 - 190850796 TATACACCCTAGTGGGGCAATCAG-AGCACTTTATTGCTAATGGATTTAGGAAAGAT--GTTGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8178967 61 - 15139346 TATACACCCTAGCGGGGCAACCAG-AGCACTTTACTCCTAATGGATTTAGGAAAGAT--GTTGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6962605 61 - 7304997 TATACACCCTAGTAGGGCAACCAG-AGCACTTTACTGCTAATGGATTTAGGAAAGAT--GTTGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9380677 61 - 11631747 CATACACCCTAGTGGGGCAACCAG-AGCACTTTACTGCTAATGGATTTAGGAAAGAT--GTTGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1786564 62 + 3286835 TATACACCTTACTGGGGCAACTGGAAGCACTTTACTGCTAACTGATTTAGGAAAGGT--GTTGA i micMur3.chrUn_NW_017968520v1 I 69 I 663 s otoGar3.GL873602 8613141 61 + 8790067 GATACACCCTCCTGGAACAATAGAAAGCACTTTAC-ATTACTTGATTTAAGAAAGAT--GTTGA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48002754 64 + 63241923 TACACACCCTACTGGGACAACCAGGGGCACTTTACTGCTAATCAATTTGAGAAAGATCCCTTGA i canFam3.chr13 I 2 I 6 s dasNov3.JH568349 4094419 62 - 5279953 CATACACCTTACCAGAGCAACCAGAGGTACTTGATTCCTAAATGATTTAGGAAAGGT--GCTGA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e mm10.chr5 76414125 5012 + 151834684 I a score=1565618.000000 s hg38.chr4_KI270787v1_alt 62686 160 + 111943 TGGAATTAAGACA-GTCAAAGAG-AAAAAA-ATTAATT----TCCTT----ACAGTTCTTTGGGAAACAGTACATGGGGTTTTG--------------------TTTGTTTCTACTTTTT-----------GTTTGGCATG-AA--------------AAAAACTCATAGAGT--------GTGATGTTTTAGTAACAAATTTCatggcaaaaatgatttgaagg s panTro5.chr4 119627378 160 - 194502333 TGGAATTAAGACA-GTCAAAGAG-AAAAAA-ATTAATT----TCCTT----ACAGTTCTTTGCGAAACAGTACATGGGGTTTTG--------------------TTTGTTTCTACTTTTT-----------GTTTGGCATG-AA--------------AAAGACTCATAGAGT--------GTGATGTTTTAGTAACAAATTTCatggcaaaaatgatttgaagg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040803 160 - 195804263 TGGAATTAAGACA-GTCAAAGAG-AAAAAA-ATTAATT----TCCTT----ACAGTTCTTTGCGAAACAGTACATGGGGTTTTG--------------------TTTGTTTCTACTTTTT-----------GTTTGGCATG-AA--------------AAAGACTCATAGAGT--------GTGATGTTTTAGTAACAAATTTCatggcaaaaatgatttgaagg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4472044 160 - 17550833 TGGAATTAAGACA-GTCAAAGAG-AAAAAA-ATTAATT----TCTTT----ACAGTTCTTTGGGAAACAGTACTTGGGGTTTTG--------------------TTTGTTTCTACTTTTT-----------GTTTGGCATG-AA--------------AAAAACTCATAGAGT--------GTGATGTTTTAGTAACAAATTTCatggcaaaaatgatttgaagg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69345413 161 - 118206036 TGGAATTAACACA-TTCGAAGAGAAAAAAA-ATGAATT----TCCTT----ACAGTTCTCTGGGAAACAGTACATGGGGTTTTG--------------------TTTGTTTCTACTTTTT-----------GTTTGGCATG-AA--------------AAAAACTCATAGAGT--------GTGATGTTTTAGTAACAAATTTCatggcaacaacgatttgaagg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111554135 161 - 190429646 TTTAGGAAAGATATTTCAAAGAA-AAATAA-ATTAATT----TCCTT----GCAGTTCTCTGGGAAACAGCACATGGGGTTTTG--------------------TTTGTTTCTACTTTTC-----------GTTTGGCATG-AA--------------AAAAACTCATAGAGT--------GTGATGTTTTAGTAACAAATTTCatggcaaaaatgatttgaagg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110723320 161 - 189454096 TTTAGGAAAGATATTTCAAAGAG-AAATAA-ATTAATT----TCCTT----GCAGTTCTCTGGGAAACAGCACATGGGGTTTTG--------------------TTTGTTTCTACTTTTC-----------GTTTGGCATG-AA--------------AAAAACTCATAGAGT--------GTGATGTTTTAGTAACAAATTTCatggcaaaaatgatttgaagg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13289806 161 + 26754465 TTTAGGAAAGATATTTCAAAGAG-AAATAA-ATTAATT----TCCTT----GCAGTTCTCTGGGAAACAGCACATGGGGTTTTG--------------------TTTGTTTCTACTTTTC-----------GTTTGGCATG-AA--------------AAAAACTCATAGAGT--------GTGATGTTTTAGTAACAAATTTCatggcaaaaatgatttgaagg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4191081 161 - 5137665 TTTAGGAAAGATATTTCAAAGAG-AAATAA-ATTAATT----TCCTT----GCAGTTCTCTGGGAAACAGCACATGGGGTTTTC--------------------TTTGTTTCTACTTTTC-----------GTTTGGCATG-AA--------------AAAAACTCATAGAGT--------GTGATGTTTTAGTAACAAATTTCatggcaaaaatgatttgaagg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122900957 161 - 135778131 TTTAGGAAAGATATTTCAAAGAG-AAATAA-ATTAATT----TCCTT----GCAGTTCTCTGGGAAACAGCACATGGAGTTTTG--------------------TTTGTTTCTACTTTTC-----------ATTTGGCAGG-AA--------------AAAAACTCATAGAGT--------GTGATGTTTTAGTAACAAATTTCatggcaaaaatgatttgaagg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2013117 161 + 2427316 TTTAGGAAAGATATTTCAAAGAG-AAATAA-ATTAATT----TCCTT----GCAGTTCTCTGGGAAACAGCACATGGGGTTTTG--------------------TTTGTTTCTACTTTTC-----------GTTTGGCATG-AA--------------AAGAACTCATAGAGT--------GTGATGTTTTAGTAACAAATTTCatggcaaaaatgatttgaagg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1308372 161 + 1448899 TTTAGGAAAGATATTTCAAAGAG-AAATAA-ATTAATT----TCCTT----ATAGTTCTCTGGGAAACAGCACATGGGGTTTTG--------------------TTTGTTTCTACTTTTC-----------GTTTGGCATG-AA--------------AAAAACTCATGGAGT--------GTGATGTTTTAGTAACAAATTTCATGGCAAAAGTGATTTGAAGg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53018540 157 - 190850796 TGGAATTAACATA-TTTGAAAAG--AAAAA-ATAAATT----TCCTT----ACACTTCTCTAGGAAATAGTACATGGGGTTTTG----------------------TGTTTCTACTTTTT-----------GTTTGGCATG-AA--------------AAAAACTCATAGAGT--------GCAATGTTTTAGTATCAAACTTCATGGCGAAAATGATTTGAAAg i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8179028 159 - 15139346 TGGTATTAACATA-TTTGAAAAG---AAAA-ATAAATT----TCCTTACTCACACTTCTCTGGGAAATAGTATATGGGATTTTG----------------------TGTTTCTACTTTTT-----------GTTTGGCAAG--A--------------AAAAACTCATAGAGT--------GTGATGTTTTAGTATCAAATTTCATAGCTAAAATGATTTgaagg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6962666 161 - 7304997 TGGAATTAACATA-TTTGAAAAG--AAAAA-ATAAATT----TCCTTACTCACACTTCTCTGGGAAATAGTATATGGGGTTTTG----------------------TGTTTCTACTTTTT-----------GTTTGGCAAG-AA--------------AAAAACTCATAGAGT--------GTGATGTTTTAGTATCAAATTTCATAGCTAAAATGATTTgaagg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9380738 161 - 11631747 TGGAATTAACATA-TTTGAAAAG--AAAAA-ATAAATT----TTCTTACTCACACTTCTCTGGGAAATAGTATATGGGGTTTTG----------------------TGTTTCTACTTTTT-----------GTTTGGCAAG-AA--------------AAAAACTCATAGAGT--------GTGATGTTTTAGTATCAAATTTCATGGCTAAAATGATTTGAAGg i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8613202 200 + 8790067 CAAAATCAATACATTTTGAAGAG--AAAAA-ATTAACT----TATTC----AGAGTTCACTGGGCAATAGTAAAGGtttttttgttttgttttgttttcttagctttgttcttattttttttttgtttggatttTGGCATGGGA--------------AAAAACTCATAGAATACATAATGGTGATATTTTAATAAGAAATTTTatggcatcaattatttgaagg i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48002824 140 + 63241923 CATCATTTACACATTTTAAAGAG-AAAAAC-ATTAGCTTTTCTCCTC----AGAATTCTCTGGGAAACAGTGCA--GGTTTTTG-----------------------------------------------G------GGG-AG--------------AGGGGGTTGTAACA---------GTGATATTTTAATAATAAATTTCATGGCCAAAAAGACTTGAAGG i canFam3.chr13 I 6 C 0 s dasNov3.JH568349 4094481 164 - 5279953 CATCATGTATATATTTTGAAGAG-AAAAAACATTAGCT----TCTTTCTTCAGAGTTCTTTGGCAAATAG----TGAACTTTCT--------------------TTTTTTTGCGGGGGGG-----------GAGGGGCATG-GATAAGTGCATAAAGGAAAAAATCATGGTAT--------TTGGTATT------------TTCATGGCAAAAGAGATTTGAGGG i dasNov3.JH568349 C 0 I 1601 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I a score=5733.000000 s hg38.chr4_KI270787v1_alt 62846 1 + 111943 a s panTro5.chr4 119627538 1 - 194502333 a i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040963 1 - 195804263 a i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4472204 1 - 17550833 a i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69345574 1 - 118206036 a i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111554296 1 - 190429646 g i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110723481 1 - 189454096 g i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13289967 1 + 26754465 g i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4191242 1 - 5137665 g i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122901118 1 - 135778131 g i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2013278 1 + 2427316 g i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1308533 1 + 1448899 g i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53018697 1 - 190850796 g i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8179187 1 - 15139346 g i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6962827 1 - 7304997 g i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9380899 1 - 11631747 g i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8613402 1 + 8790067 g i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48002964 1 + 63241923 A i canFam3.chr13 C 0 I 3191 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094645 1601 - 5279953 I a score=4932415.000000 s hg38.chr4_KI270787v1_alt 62847 451 + 111943 gaggaaggaattaggaatattttgttattataaagtacttg------ccattaagtggtatagtgt--tgagagagtgggcttggattacctgcaaatgtacattacaaactctagggcaactact-agaaacaagtttaaaa-atatataatt--gacatgctaagaaaggagagaaaatggaatc--ataacacactcaattaaaaaccacaaaaggcagaaaaagtttggagaacaaaaatagaaactaagatcaagggcaacaaataggaaactataacaaatatggtagatattaatgtaactctatcaataaccaacctaaatgtcgatggtctaaatatagcaattaaaagacaaagatcgtcagagtggatcaaagatcaagacccaactatacattatctacaagagaccccctttaaatataaagacagatatagattaaaagtaaatgggtagg s panTro5.chr4 119627539 451 - 194502333 gaggaaggaattaggaatattttgttattataaagtacttg------ccattaagtggtatagtgt--tgagagagtgggcttggattacctgcaaatgtacattacaaactctagggtaactact-aaaaacaagtttaaaa-atacataatt--gacatgctaagaaaggagagaaaatggaatc--ataacacactcaattaaaaaccacaaaaggcagaaaaagtttggagaacaaaaatagaaactaagatcaagggcaacaaataggaaactataacaaatatggtagatattaatgtaactctatcaataaccaacctaaatgttgatggtctaaatatagcaattaaaagacaaagattgtcagagtggatcaaagatcaagacccaactatatattatctacaagagaccccctttaaatataaagacagatatagattaaaagtaaatgggtagg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121040964 451 - 195804263 gaggaaggaattaggaatattttgttattataaagtacttg------ccattaagtggtatagtgt--tgagagagtgggcttggattacctgcaaatgtacattacaaactctagggtaactact-aaaaacaagtttaaaa-atacataatt--gacatgctaagaaaggagagaaaatggaatc--ataacacactcaattaaaaaccacaaaaggcagaaaaagtttggagaacaaaaatagaaactaagatcaagggcaacaaataggaaactataacaaatatggtagatattaatgtaactctatcaataaccaacctaaatgttgatggtctaaatatagcaattaaaagacaaagattgtcagagtggatcaaagatcaagacccaactatatattatctacaagagaccccctttaaatataaagacagatatagattaaaagtaaatgggtagg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4472205 453 - 17550833 gaggaaggaattaggaatattttgttattataaagtacttg------ccattaaatggtatagtgt--tgagagagtgggcttggattacctgcaaatgtacattacaaactctagggcaactact-aaaaacaagtttaaaa-atatataattaggacatgctaagaaaggagagaaaatggaatc--ataacacactcaattaaaaaccacaaaaggcagaaaaagtttggagaacaaaaatagaaactaagatcaagggcaacaaataggaaactataacaaatatggtagatattaatgtaactctatcaacaaccaacctaaatgtcgatggtctaaataaagcaattaaaagacaaagattgtcagagtggatcaaagatcaagacccaattatacattatctacaagagaccccctttaaatataaagacagatatagattaaaagtaaatgggtagg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69345575 459 - 118206036 gaggaaggaattaggaatattttgttattataaagtacttgcactacccgtgaagtggtatagtgt--tgagagagtgggcttggattagttgtaaacgtacattataaactctagggcaactact-aaaaataagtttaaaa-atatctaatt--ggcatgctaagaaaggagagaaaatggaatcatataacacactcaattaaaaaccacaaaagccagaaaaagtttggagaacaaaaatagaaactaagatcaagggcaacaaataggaaactgtaacaaatatggtagatattaatgtaactctatcaataaccaacctaaatgtcaatggtctaaatatagcaattaaaagacaaagattgtcagagtggatcaaagatcaagactcaactatacgttatctacaagagaccccttttaaatataaagacagatatagattaaaagtaaatgggtagg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111554297 459 - 190429646 gaagaaggaattaggaatattttgttattataaagtacttgcactacccttgaagtggtatagtgt--tgagagagtgggcttggattagttgtaaatgtacattacaaacgctagggcaactatt-aaaaataagtttaaaa-atatataatt--gacatgataagaaaggagagaaaatggaatcatgtaacacgctcaattaaaaaccacaaaaggcaggaaaagtttggaaaacaaaaatagaaactaagatcaagggcaacaaataggaaactataacaaatatggtagatattaatgtaactctatcaataaccaacctaaatgtcaatggtctaaatatagcaattaaaagacaaagattgtcagagtggatcaaagatcaagacccaactatacattatctacaagagaccccctttaaatataaagacagatatagattaaaagtaaatgggtagg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110723482 459 - 189454096 gaagaaggaattaggaatattttgttattataaagtacttgcactacccttgaagtggtatagtgt--tgagagagtgggcttggattagttgtaaatgtacattacaaacgctagggcaactatt-aaaaataagtttaaaa-atatataatt--gacatgataagaaaggagagaaaatggaatcatgtaacacactcaattaaaaaccacaaaaggcaggaaaagtttggagaacaaaaatagaaactaagatcaagggcaacaaataggaaactataacaaatatggtagatattaatgtaactctatcaataaccaacctaaatgtcaatggtctaaatatagcaattaaaagacaaagattgtcagagtggatcaaagatcaagacccaactatacattatctacaagagaccccctttaaatataaagacagatatagattaaaagtaaatgggtagg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13289968 459 + 26754465 gaagaaggaattaggaatattttgttattataaagtacttgcactacccttgaagtggtatagtgt--tgagagagtgggcttggattagttgtaaatgtacattacaaacgctagggcaactatt-aaaaataagtttaaaa-atatataatt--gacatgataagaaaggagagaaaatggaatcatgtaacacactcaattaaaaaccacaaaaggcaggaaaagtttggagaacaaaaatagaaactaagatcaagggcaacaaataggaaactataacaaatatggtagatattaatgtaactctatcaataaccaacctaaatgtcaatggtctaaatatagcaattaaaagacaaagattgtcagagtggatcaaagatcaagacccaactatacattatctacaagagaccccctttaaatataaagacagatatagattaaaagtaaatgggtagg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4191243 459 - 5137665 gaagaaggaattaggaatattttgttattataaagtacttgcactacccttgaagtggtatagtgt--tgagagagtgggcttggattagttgtaaatgtacattacaaacgctagggcaactact-aaaaataagtttaaaa-atatataatt--gacatgataagaaaggagagaaaatggaatcatgtaacacactgaattaaaaaccacaaaaggcaggaaaagtttggagaacaaaaatagaaactaagatcaagagcaacaaataggaaactataacaaatatggtagatattaatgtaactctatcaataaccaacctaaatgtcaatggtctaaatatagcaattaaaagacaaagattgtcagagtggatcaaagatcaagacccaactatacattatctacaagataccccctttaaatataaagacagatatagattaaaagtaaataggtagg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122901119 458 - 135778131 gaagaaggaattaggaatattttgttattataaagtacttgcactacccttgaagtggtatagtgc--tgagacagtgggcttggattagttgtaaatgtacattagaaacgctagggcaactact-aaaaataagtttaaaa-atatataatt--gatatgataag-aaggagagaaaatggaatcatgtaacacactcaattaaaaaccacaaaaggcagaaaaagtttggagaacaaaaatagaaactaagatcaagggcaacaaataggaaactataacaaatatggtagatattaatgtaactctatcaataaccaacctaaatgtcgatggtctaaatatagcaattaaaagacaaagattgtcagaatggatcaaagatcaagacccaactatacattatctacaagagaccccctttaaatataaagacaggtatagattaaaagtaaatgggtagg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2013279 459 + 2427316 gaagaaggaattaggaatattttgttattataaagtacttgcactacccttgaagtggtatagtgt--tgagagagtgggcttggattagtcgtaaatgtacattacaaacgctagggcaactact-aaaaataagtttaaaa-atatataatt--gacatgataagaaaggagagaaaatggaatcatgtaacacactgaattaaaaaccacaaaaggcaggaaaagtttggagaacaaaaatagaaactaagatcaagagcaacaaataggaaactgtaacaaatatggtagatattaatgtaactctatcaataaccaacctaaatgtcaatggtctaaatatagcaattaaaagacaaagattgttagagtggatcaaagatcaagacccaactatacattatctacaagataccccctttaaatataaagacagatatagattaaaagtaaataggtagg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1308534 459 + 1448899 gaggaaggaattaggaatattttgtcattataaagtacttgcactacccttgaagtggtatagtgt--tgagagagtgggcttggattagttgtaaatgtacattacaaacgctagggcaactact-aacaataagtttaaaa-atatataatt--gacatgataagaaaggagagaaaatggaatcatgtaacacactcaattaaaaaccacaaaaggcagaaaaagtttggagaacaaaaatagaaactaagatcaaggacaacaaataggaaactataacaaatatggtagatattaatgtaattctatcaattaccaacctaaatgtcgatggtctaaatatagcaattaaaagacaaagattgtcagagtggatcaaagatcaagacccaactatacattatctacaagagaccccctttaaatataaagacagatataggttaaaagtaaatgggtagg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53018698 452 - 190850796 aatgaagaaattaggaatattttgttattataa---acttgcaccacccatgaagtggagtagtgt--tgagagagtgggcttggattagttgtaaacgtacattgcaaactctagggcaaccact-aaaaatgagtttaaaa-atatataatt--gatatgctaagaaaggagagaaaatggaatcatataacacactcaattaaaaaccacaaaaggcagaaaaagtttgaagaacaaaaatagaaactaagatcaagggcaacaaataggaaactgtaacaaatatggtagatattaatctaactctatcaataaccaatctaaatgtcaacagtctaaatacagcaattaaaagacaaagattgtcacagtagatcaaagatcaagacccaactatatgttatctacaatagaccccctttaaatttaaagacagatatagattaaaagtaaa----tagg i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8179188 454 - 15139346 aatgaagaaattaggaatattttgttattataaagtacttgcactgcccatgaagtggtgtagtgt--tgagagagtgggcttggattagttgtaaatgtacattgcaaattctagggcaaccact-aaaaatgagtttaaaa-atatataatt--gatatgctaagaaaggagagaaaatggaatcatataacacactcaattaaaaaccacaaaaggcagaaaaagtttggagaacaaaaatagaaactaagatcaagggcaacaaataggaaactgtagcaaatatggtagatattaatctaactctatcaataaccaatccaaatgtcaacagtctaaatacagtaattaaaagacaaagattg-cagagtagatcaaagatcaagacccaaccatatgttatctacaagagaccccctttaaatataaagatagatatagattaaaagtaaa----tagg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6962828 454 - 7304997 aatgaagaaattaggaatattttgttattataaagtacttgcactgcccatgaagtggtgtaatgt--tgagagagtaggcttggattagttgtaaacgtacattgcaaattctagggcaaccact-aaaaatgagtttaaaa-atatataatt--gatatgctaagaaaggagagaaaatggaatcatataacacactcaattaaaaaccacaaaaggctgaaaaagtttggagaacaaaaatagaaactaagatcaagagcaacaaataggaaactgtaacaaatatgatagatattaatctaactttatcaataaccaatctaaatgtcaacagtctaaatacagcaattaaaacacaaagattgtcagagtagatcaaagatcaagacccaactatatgttatctacaagagaccccctttaaatataaagacagatatagatt-aaagtaaa----tagg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9380900 456 - 11631747 aatgaagaaattaggaatattttgttattataaagtacttgcaccgcccatgaagtggtgtagtgt--tgagagagtgggcttggattagttgtaaatgtgcattgcaaattctggggcaaccact-aaaaatgagtttaaaatatatataatt--gatatgctaagaaaggagagaaaacggaatcatgtaacacactcaattacaaaccacaaaaggcagaaaaagtttggagaacaaaaatagaaactaagatcaagggcaacaaataggaaactgtaacaaatatggtagatattaatctaactctatcagtaaccaatctaaatgtcaacagtctaaatacagcaattaaaagataaagattgtcagagtagattaaagatcaagacccaactataagttatctacaagagaccccctttaaatataaagacagatatagattaaaaggaaa----tagg i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8613403 442 + 8790067 gagaaaggaattaggaatattttgttactatacagtacttg-actacctatgaagcagtacagtgtaatttcagactatatctggattagctgtaaatgtacattgcaaactctagggcaacttctcaacaaagagttttaaa-aaattctatt--gatattctaagaaaggagacaaaatggaattatatgaaatgtttaa-tgaaaactataaaacatagaaaaagtatggaaaataaa----------aggaacaaaggtagcaaataggaaacagtaacacatatggtagatattaatccaactatatcaa-aatcaccttaaacatcaattgtctaagtatg-----taaaggacaaagatcatcctggttgatcaaatatcaagatcaaactat--gttacctacaaggaactcactttaaatataaaaacacatgtagattaaaagtaaatggagggg i otoGar3.GL873602 C 0 I 3997 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094645 1601 - 5279953 I e canFam3.chr13 48002965 3191 + 63241923 I a score=5701678.000000 s hg38.chr4_KI270787v1_alt 63298 615 + 111943 tgctgggataattggcagccacatgtagaagaatggaactatatcctcatctctcactt-atacaaaaatcaactcaagatggatcaaagacttaaatctaagaccagaaaccataaaaattctaaaagacaaaatcagaaaaactcttctagacattggcctaggcaaagagttcatgactaagaacccaaaagtaaatgcaccataaacaaagataaatgtatgggacttaattaaaccaaaaagcttctgcacagcaaaagaaataatcagcagagtaaacagacaacccacggagtgggagaaaatctttgcaaactctacatctgacaaaggactaatatctagaatc---aaggaattcaaacaaatcagc-aag-aaaaaacaaat-aatcccatcaaaaagtaggctaaggacatgaatagacaattctcaaaa-----------gaagatatacaaatggccaacaaac--at--g-aaaaaatgatcaatatcactaatgatcagggaaacaccaattaaaaccacagtgtgataccaccttactcctgcaagaatgggcataatcaaaaa-a---taaataaaaatagatgttggtgcggatgtggtaaaaag-ggaacacttttacactgc s panTro5.chr4 119627990 616 - 194502333 tactgggataattggcagccacatgtagaagaatggaactatatcctcatctctcactttatataaaaatcaactcaagatggatcaaagacttaaatctaagaccagaaaccataaaaattctaaaagacaaaatcagaaaaactcttctagacattggcctaggcaaagagttcatgactaagaacccaaaagtaaatgcaccataaacaaagataaatgtatgggacttaattaaaccaaaaagcgtctgcacagcaaaagaaataatcagcagagtaaacagacaacccacggagtgggagaagatctttgcaaactctacatccgacaaaggactaatatctagaatc---aaggaattcaaacaaatcagg-aag-aaaaaacaaat-aatcccatcaaaaagtaggctaaggacatgaatagacaattctcaaaa-----------gaagatatacaaatggccaacaaac--at--g-aaaaaatgatcagtatcactaatgatcagggaaacaccaattaaaaccacagggtgataccaccttactcctgcaagaatgggcataatcaaaaa-a---taaataaaaatagatgttggtgtggatgtggtaaaaag-ggaacacttttacactgc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121041415 616 - 195804263 tactgggataattggcagccacatgtagaagaatggaactatatcctcatctctcactttatacaaaaatcaactcaagatggatcaaagacttaaatctaagaccagaaaccataaaaattctaaaagacaaaatcagaaaaactcttctagacattggcctaggcaaagagttcatgactaagaacccaaaagtaaatgcaccataaacaaagataaatgtatgggacttaattaaaccaaaaagcgtctgcacagcaaaagaaataatcagcagagtaaacagacaacccaaggagtgggagaaggtctttgcaaactctacatccgacaaaggactaatatttagaatc---aaggaattcaaacaaatcagg-aag-aaaaaacaaat-aatcccatcaaaaagtaggctaaggacatgaatagacaattctcaaaa-----------gaagatatacaaatggccaacaaac--at--g-aaaaaatgatcagtatcactaatgatcagggaaacaccaattaaaaccacagggtgataccaccttactcctgcaagaatgggcataatcaaaaa-a---taaataaaaatagatgttggtgtggatgtggtaaaaag-ggaacacttttacactgc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4472658 616 - 17550833 tactgggataattggcagccacatgtagaagaatggaactatatcctcatctctcactttatacaaaaatcaactcaagatggatcaaagacttaaatctaagaccagaaaccataaaaattctaaaagacaaaatcagaaaaactcttctagacattggcctaggcaaagagttcatgactaagaacccaaaagtaaatgcaccataaacaaagataaatgtatgggacttaattaaaccaaaaagcttctgcacagcaaaagaaataatcagcagagtaaacagacaacccacggagtgggagaaaatctttgcaaactctacatccgacaaaggactaatatctagaatc---aaggaattcaaacaaatcagc-aag-aaaaaacaaat-aatcccatcaaaaagtaggctaaggacatgaatagacaattctcaaaa-----------gaagatacacaaatggacaacaaac--at--g-aaaaaatgatcaatatcactaatgatcagggaaacaccaattaaaaccacagtgtgataccaccttactcctgcaagaatgggcataatcaaaaa-a---taaataaaaatagatgttggtgtggatgtggtaaaaag-ggaacacttttacactgc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69346034 615 - 118206036 tgctgggataattggcggccacatgtagaagaatggaactacaccctcatctctcactttatacaaaaatcaactcaagatggatcaaagacttaaatctaagacccgaaaccataaaaattctaaaagacaacatcagaaaaactcttctagacattggtgtaggcaaagagttcatggctaagaacccaaaagtaaatgcaacataaacaaagataaatgtatgggacttaattaaaccaaaaagcttctgcacagcaaaagaaataatcagcagagtaaacagacaacccatggagtgggagaaaatctttgccaactctacatccgacaaaggactaatatccagaatc---aaggaactcaaacaaatcagc-aagaaaaaaacaaataaatcccatcaaaaagtgggctaaggacatgaatagacaattctcaaaa-----------gaagatacacaaatggccaacaaac--atacg-aaaaaatgatcgacatcactaatgatcagggaaacaccaattaaaaccacagtgtgataccaccttactcctgcaagaatgggcataatcaataa-a--------aaaaatagatgttggcgtggatgtggtaaaaag-ggaagacttttacactgc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111554756 618 - 190429646 tgctgggataattggcagccacaggtagaagaatagaactatatcctcatctctcactttatacaaaaatcaactcaagatggatcaaaggcttaaatctaagatctgaaaccatacaaattctaaaagacaacatcagaaaaactcttctagacattggcctaggcaaagagttcatgactaagaacccaaaagcaaatgccacataaacagagatgaatgtgtgagacttaattaaaccaaaaaccttctgcccagcaaaagaaataatcagc-----aaacagacaacccacagagtgggagaaaatctttgcaaattctacatccgacaaaggactaatatccagaatctacaaggaactcaaacaaatcagc-aagaaaaaaacaaat-aatcccatcaaaaagcgggctaaggacgtgaataaacaattctcaaaa-----------gaagatatacaaatggccaacaaac--at--g-aaaaaatgctcaacatcactaatgatcagggaaatgccaattaaaatcacagtgtgataccaccttactcctgcaagaatgggcataagaaaatt-ttttttaaaaaaaatagatgttagcgtggatgtggtaaaaag-ggaacacttttacactac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110723941 618 - 189454096 tgctgggataattggcagccacaggtagaagaatagaactatatcctcatctctcactttatacaaaaatcaactcaagatggatcaaaggcttaaatctaagatctgaaaccataaaaattctaaaagacaacatcagaaaaactcttctagacattggcctaggcaaagagttcatgactaagaacccaaaagcaaatgccacataaacagagatgaatgtgtgagacttaattaaaccaaaaaccttctgcccagcaaaagaaataatcagc-----aaacagacaacccacagagtgggagaaaatctttgcaaattctacatccgacaaaggactaatatccagaatctacaaggaactcaaacaaatcagc-aagaaaaaaacaaat-aatcccatcaaaaagcgggctaaggacgtgaataaacaattctcaaaa-----------gaagatatacaaatggccaacaaac--at--g-aaaaaatgctcaacatcactaatgatcagggaaatgccaattaaaatcacagtgtgataccaccttactcctgcaagaatgggcataagaaaaaa-ttttttaaaaaaaatagatgttagcgtggatgtggtaaaaag-ggaacacttttacactac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13290427 618 + 26754465 tgctgggataattggcagccacaggtagaagaatagaactatatcctcatctctcactttatacaaaaatcaactcaagatggatcaaaggcttaaatctaaaatctgaaaccataaaaattctaaaagacaacatcagaaaaactcttctagacattggcctaggcaaagagttcatgactaagaacccaaaagcaaatgccacataaacagagatgaatgtgtgagacttaattaaaccaaaaaccttctgcccagcaaaagaaataatcagc-----aaacagacaacccacagagtgggagaaaatctttgcaaattctacatccgacaaaggactaatatccagaatctacaaggaactcaaacaaatcagc-aagaaaaaaacaaat-aatcccatcaaaaagcgagctaaggacgtgaataaacaattctcaaaa-----------gaagatatacaaatggccaacaagc--at--g-aaaaaatgctcaacatcactaatgatcagggaaatgccaattaaaatcacagtgtgataccaccttactcctgcaagaatgggcataagaaaaaa-tttttttaaaaaaatagatgttagcgtggatgtggtaaaaag-ggaacacttttacactac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4191702 619 - 5137665 tgctgggataattggcagccacaggtagaagaacagaactatatcctcatctctcactttatacaaaaatcaactcaggatggatcaaaggcttaaatctaagatctgaaaccataaaaattctaaaagacaacatcagaaaaactcttctagacattggcctaggcaaagagttcatgactaagaacccaaaagcaaatgccacataaacagagatgaatatgtgagacttaattaaaccaaaaaccttctgcccagcaaaagaaataatcagc-----aaacagacaacccacagagtgggagaaaatctttgcaaactatacatccgacaaaggactaatatccagaatctacaaggaactcaaacaaatcagc-aagaaaaaaacaaat-aatcccatcaaaaagcaggctaaggacgtgaataaacaattctcaaaa-----------gaagatatacaaatggccaacaaac--at--g-aaaaaatgctcaacatcactaatgatcagggaaatgccaattaaaatcacagtgtgataccaccttactcctgcaagaatgggcataagaaaaaattttttttaaaaaaatagatgttagcgtggatgtggtaaaaag-ggaacacttttacactac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122901577 619 - 135778131 tgctgggataattggcagccacaggtagaagaatagaactatatcctcatctctcactttatacaaaaatcaactcaagatggatcaaaggcttaaatctaagatctgaaaccataaaaattctaaaagacaacatcagaaaaactcttctagacattggcctaggcaaagagttcatgactaaggacccaaaagcaaatgccacataaacagagatgaatgtgtgggacttaattaaaccaaaaagcttctgcccagcaaaagaaataatcagc-----aaacagacaacccacagagtgggagaaaatctttgcaaactctacatccgacaaaggactaatatccagaatctatgaggaactcaaacaaatcagcaaaaaaaaaaacaaat-aatcccatcaaaaagcgggctaaggacatgaataaacaattctcaaaa-----------gaagatatacaaatggccaacaaac--at--g-aaaaaatgctcaacatcactaatgatcggggaaatgacaattaaaatcacagtgtgatatcaccttactcctgcaagaatgggcataagaaaaaa-tttttttaaaaaaatagatgttagcgtgggtctggtaaaaag-ggaacacttttacactac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2013738 618 + 2427316 tgctgggataattggcagccacaggtagaagaacagaactatatcctcatctctcactttatacaaaaatcaactcaagatggatcaaaggcttaaatctaagatctgaaaccataaaaattctaaaagacaacatcagaaaaactcttctagacattggcctaggcaaagagttcatgactaagaacccaaaagtaaatgccacataaacagagatgaatgtgtgagacttaattaaaccaaaaaccttctgcccagcaaaagaaataatcagc-----aaacagacaacccacagagtgggagaaaatctttgcaaactctacatccgacaaaggactaatatccagaatctacaaggaactcaaacaaatcagc-aagaaaaaaacaaat-aatcccatcaaaaagcgggctaaggacgtgaataaacaattctcaaaa-----------gaagatatacaaatggccaacaaac--at--g-aaaaaatgctcaacatcactaatgatcagggaaatgccaattaaaatcacagtgtgataccaccttactcctgcaagaatgggcataagaaaaaa-tttttttaaaaaaatagatgttagtgtggatgtggtaaaaag-ggaacacttttacactac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1308993 619 + 1448899 tgctgggataattggcagccacaggtagaagaatagaactatatcctcatctctcactttatacaaaaatcaactcaagatggatcaaagccttaaatctaagatctgaaaccataaaaattctaaaagacaacatcagaaaaactcttctagacattggcctaggcaaagagttcatgactaagaacccaaaagcaaatgccacataaacagagataaatgtgtgggacttaattaaaccaaaaagcttctgcccagcaaaagaaataatcagc-----aaacagacaacccacagagtgggagaaaatctttgcaaactctacatccgacaaaggactaatatccagaatctacaaggaactcaaacaaatcagc-aagaaaaaaacaaat-aatcccatcaaaaagtgggctaaggacatgaataaacaattctcaaaa-----------gaagatacacaaatggccaacaaac--at--gaaaaaaatgctcaacatcactaatgatcagggaaatgccaattaaaatcacagtgtgataccaccttacccctgcaagaataggcataataaaaaa-atttttttaaaaaatagatgttggcatggatgtggtaaaaag-ggaacacttttacactgc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53019150 629 - 190850796 tgctgggataattggcagccacatgtagaaaaatgaaactgtatccttatctctcactttatacaaaaattaactcaagatggatcaaagacttaaatctaagacctgacaccataaaaactctaaaagacaacattggaaaaactcttccagacattggcctgggctaagagatcatgactaagaatccaaaagcaaatgcaacagaaacaaagatcaatgggtgggacttaattaaactaaaaagcttctgcacagcaaaagaaataatcagcagagtaaacagacaactcacagagtgggagaaaatcttcacaatctgtacatccaaca-agaactaatatccagaatctacaaggaactcaaacaaatcaaa-aagaaaaaaa-aaat-aatctcatcaaaaagtaggctaaggacatgaatagacaa-tctcaaaa--aaaaaaaaaaaagaaatacaaatggccaataaacatat--gaaaaaaatgcttaacataattaatgatcagggaaacaccaatcaaaaccacagtgtgatactacctta-tcctacaaaaatagccataatcaaaaa-a--taaaaaactaatagatattggcatggatgtggtaaaaac-ggaacacttttacactgc i calJac3.chr3 C 0 I 46 s saiBol1.JH378162 8179642 628 - 15139346 tgctgggataattggcagccacatgtagaagaatgaaactgtatccttatctctcactttatacaaaaattaactcaagaaggatcaaagacttaaatctaagacctgacaccatgaaaactctaaaagacaacattggaaaaactcttctagacgttggtctgggctaagagtttgtgactaagaacccaagagcaaatgcaacataaacaaagatcagtggatgggacttaattaaactaaaaatcttctgcacagcaaaagaaataatcagcagaattaacagacaactcacagagtgggagaaaatcttcacaatctatacatctaacagagaagtaatatccagaatctacaaaaaa---actcaaatcaac-aag--aaaaa-aaat-aatctcaacaaaaagtaggctaaggacatgaatagacaa-tctcaaaaataaaaataaaaaataaatacaaatgaccaagacacttaa--g-aaaaaatgctcaacatgattaatgatcagggagacgccaatcaaaaccacagtgtgatgctaccttattcctacaaaaatgaccataatcaaaaa-a--tcaaaaaataatagatattggtgttgatgtggtaaaaaagggaacactttcacactgc i saiBol1.JH378162 C 0 I 46 s cebCap1.NW_016107439v1 6963282 628 - 7304997 tgctgggataattggcagccacatgtagaagaatgaaaccgtatctttatctctcactttatacaaaaattaactcaagatggatcaaagacttaaatctaagacctgacaccataaaaattctaaaagacaacattggaaaaactcttctagacattggcctgggctaagagttcatgactaagaactcaagagcaaatgcaacataaacaaagatcaatggatgggactt-attaaactaaaaatcttctgcacagcaaaagaaataaccagcagagtaaacagacaactcacagagtgggagaaaatcttcacaatctatacatctaacagagaagtaatatccagaatctacaaaaa----actcaaatcaac-aagaaaaaaataaat-aatctcatcaaaaagtagactaaggacatgaatagacaa-tctcaaaaataaaaaaaaaaaagaaatacaaatggccaagaaacttat--g-aaaaaatgctcaacatgattaatgatcagggagacgccaatcaaaaccacagtgtgatgctaccttattcctacaaaaatggccataatcaaaaa-a--tcaaaaaataatagatattggtgtggatgtggtaaaaag-ggaacacttttacactgc i cebCap1.NW_016107439v1 C 0 I 59 s aotNan1.NW_018493494v1 9381356 624 - 11631747 tgctgggataattggcagccacatgtagaaaaatgaaactgtatccttatctctcactttatacaaaaattaactcaagacggatcaaagacttaaatctaagacctgacaccataaaaactctaaaagacaacattggaaaaactcttctagacattggcctgggctaagagatcatgactaagaacccaaaagcaaatgcaacataaacaaagatcaatggatgggacttaattaaactaaaaatcttctgcacagcaaaagaaat----agcagagtaaacagacaactcacagagtgggagaaaatcttcacaatctatacatctaacagagaagtaatatccagaatctacaaaaa----actcaaatcaag-aagaaaaaaa-taat-aatctcatcaaaaagtaggctaaggacatgaaatgacaa-tctcaaaaataaaaataaaaaagaaatacaaatggccaacaaacttat--g-aaaaaatgctcaacatgattaatgatcagggagatgccaatcaaaaccacagtgtgatgctaccttattcctacaaaaatggccataatcaaaaa-a--tcaaaaaataatagatattggtgtggatgtggtaaaaag-ggaacactgttacactgc i aotNan1.NW_018493494v1 C 0 I 46 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094645 1601 - 5279953 I e otoGar3.GL873602 8613845 3997 + 8790067 I e canFam3.chr13 48002965 3191 + 63241923 I a score=46051.000000 s hg38.chr4_KI270787v1_alt 63913 6 + 111943 tattct s panTro5.chr4 119628606 6 - 194502333 tattct i panTro5.chr4 C 0 C 0 s panPan2.chr4 121042031 6 - 195804263 tattct i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4473274 6 - 17550833 tattct i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69346649 6 - 118206036 tattct i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111555374 6 - 190429646 tattct i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110724559 6 - 189454096 tattct i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13291045 6 + 26754465 tattct i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4192321 6 - 5137665 tattct i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122902196 6 - 135778131 tattct i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2014356 6 + 2427316 tattct i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1309612 6 + 1448899 tgttct i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53019825 6 - 190850796 gattct i calJac3.chr3 I 46 I 7 s saiBol1.JH378162 8180316 6 - 15139346 gattcc i saiBol1.JH378162 I 46 I 7 s aotNan1.NW_018493494v1 9382026 6 - 11631747 gattcc i aotNan1.NW_018493494v1 I 46 I 7 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094645 1601 - 5279953 I e cebCap1.NW_016107439v1 6963910 59 - 7304997 I e otoGar3.GL873602 8613845 3997 + 8790067 I e canFam3.chr13 48002965 3191 + 63241923 I a score=3173538.000000 s hg38.chr4_KI270787v1_alt 63919 333 + 111943 actaagagtagaactaccatttgacccagcaatcccactactgggtgtctacccagagg--aaaagaagtcattatatgaaaaagatacttgtac------------------------atgcatgtttatagcagcacaattcacaattgcaaaaatatggagccagcctaaatgtccatcaatcaataagtggattttaaaaatctgatatatattcc--------acacaccatggaaaactactcagcc--aaaaaagaacgaaataatggcatttgcagcaa-cctggatggagttggagaccattattctaagtgaagtaactcagga-----------------atagaaaaccaaacattgtatgttctcacttataag s panTro5.chr4 119628612 333 - 194502333 actaagagtagaactaccatttgacccagcaatcccactactgggtgtctacccagagg--aaaagaagtcattatatgaaaaagatacgtgtac------------------------atgcatgtttatagcagcacaattcacaattgcaaaaatatggagccagcctaaatgtccatcaatcaataagtggattttaaaaatctgatatatattcc--------acacaccatggaaaactactcagcc--aaaaaagaacgaaataatggcatttgcagcaa-cctggatggagttggagaccattattctaagtgaagtaactcagga-----------------atagaaaaccaaacattgtatgttctcacttataag i panTro5.chr4 C 0 C 0 s panPan2.chr4 121042037 332 - 195804263 actaagagtagaactaccatttgacccagcaatcccactactgggtgtc-acccagagg--aaaagaagtcattatatgaaaaagatacttgtac------------------------atgcatgtttatagcagcacaattcacaattgcaaaaatatggagccagcctaaatgtccatcaatcaataagtggattttaaaaatctgatatatattcc--------acacaccatggaaaactactcagcc--aaaaaagaacgaaataatggcatttgcagcaa-cctggatggagttggagaccattattctaagtgaagtaactcagga-----------------atagaaaaccaaacattgtatgttctcacttataag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4473280 333 - 17550833 actaaaagtagaactaccatttgacccggcaatcccactactgggtgtctacccagagg--aaaagaagtcattatatgaaaaagatacttgtac------------------------atgcatgtttatagcagcacaattcacaattgcaaaaatatggagccagcctaaatgtccatcaatcaataagtggattttaaaaatctgatatatattcc--------acacaccatggaaaactactcagcc--aaaaaagaacgaaataatggcatttgcagcaa-cctggatggagttggagaccattattctaagtgaagtaactcagga-----------------atagaaaaccaaacattttatgttctcgcttataag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69346655 333 - 118206036 actaaaagtagaactaccatttgacccagcaatcccactactaggtatctacccagagg--aaaagaagtcattatatgaaaaagatacttgtac------------------------atgcatgtttatagcagcacaattcacaattgcagaaatatggagccagcctaaatgtccatcaaccaataagtggattttaaaaatctgatatatattcc--------acacaccatggaatactactcagcc--aaacaagaacgaaataatggcatttgcagcga-cctggatggagttggagaccattattctaagtgaagtaactcagga-----------------atagaaaaccaaacattgtgtgttctcacttataag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111555380 356 - 190429646 actaaaagtagaactaccatttgacccagcaatctcactactgggtatatagccagagg--gaaagaagtcattatatgaaaaagacacttgtac-caaaaagacacttgtataaaaagacacttgtttatagcagcacaattcacaattgcaaaaatatggaactagtctaaatgtccatcaaccaataagtggattttaaaaatctgacatatatttc--------acacaccatggaaaactactcagcc--aaaaaagaacaaaataatggcatttgcagcaa-cctggatggagttggagaccattattctaagtgaagtaactcagaa-----------------atagaaaaccaaacattgtatgtcctctcttataaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110724565 356 - 189454096 actaaaagtagaactaccatttgacccagcaatctcactactgggtatatacccagagg--aaaagaagtcattatatgaaaaagacacttgtac-caaaaagacacttgtataaaaagacacttgtttatagcagcacaattcacaattgcaaaaatatggaactagcctaaatgtccatcaaccaataagtggatttttaaaatctgacatatatttc--------acacaccatggaaaactactcagcc--aaaaaagaacaaaataatggcatttgcagcaa-cctggatggagttggagaccattattctaagtgaagtaactcagga-----------------atagaaaaccaaacattgtatgtcctctcttataaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13291051 356 + 26754465 actaaaagtagaactaccatttgacccagcaatctcactactgggtatatacccagagg--aaaagaagtcattatatgaaaaagacacttgtac-caaaaagacacttgtataaaaagacacttgtttatagcagcacaattcacaattgcaaaaatatggaactagcctaaatgtctatcaaccaataagtggatttttaaaatctgacatatatttc--------acacaccatggaaaactactcagcc--aaaaaagaacaaaataatggcatttgcagcaa-cctggatggagttggagaccattattctaagtgaagtaactcagga-----------------atagaaaaccaaacattgtatgtcctctcttataaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4192327 357 - 5137665 actaaaagtagaactacaatttgacccagcaatctcactactgggtatatacccagagg--aaaagaagtcattatatgaaaaagacacttgtacataaaaagacacttgtataaaaagacacttgtttatagcagcacaattcacaattgcaaaaatatggaactagcctaaatgtccatcaaccaataagtggattttaaaaatctgacatatattcc--------acacaccatggaaaactactcagcc--aaaaaagaacaaaataatggcatttgcagcaa-cctggatggagttggagaccattattctaagtgaagtaactcagga-----------------atagaaaaccaaacattgtatgtcctctcttgtaaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122902202 357 - 135778131 actaaaagtagaactaccatttgacccagcagtctcactactgggtatatacccagagg--aaaagaagtcattatatgaaaaagacacttgtacataaaaagacacttgtataaaaagacacttgtttatagcagcacaattcacaattgcaaaaatatggaactagcctaaatgtccatcaaccaataagtggattttaaaaatctgacatatattcc--------acacaccttggaaaactactcagcc--aaaaaagaacaaaataatggcatttgcagcaa-cctggatggagttggagaccattattctaagtgaagtaactcagga-----------------atagaaaaccaaacattgtatgtcctctcttataaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2014362 357 + 2427316 actaaaagtagaactaccatttgacccagcaatctcactactgggtatatacccagagg--aaaagaagtcattatatgaaaaagacatttgtacataaaaagacacttgtataaaaagacacttgtttatagcagcacaattcacaattgtaaaaatatggaactagcctaaatgtccatcaaccaataagtggattttaaaaatctgacatatattcc--------acacaccatggaaaactactcagcc--aaaaaagaacaaaataatggcatttgcagcaa-cctggatggagttggagaccattattctaagtgaagtaactcagga-----------------atagaaaaccaaacattgtatgtcctctcttgtaaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1309618 333 + 1448899 actaaaagtagaactaccatttgacccagcaatctcactactgggtatatacccagaag--aaaagaagtaattgtatgaaaaagacacttgtac------------------------atgcatgtttatagcagcacaattcacaattgcaaaaatatggaactagcctaaatgtccatcaaccaataagtggattttaaaaatctgacatatattcc--------acacaccatggaaaactactcagcc--aaaaaagaacgaaataatggcatttgcagcaa-cctggatggagttagagaccattattctaagtgaaataactcagga-----------------atagaaaaccaaacattatatgtcctctcttataaa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53019838 340 - 190850796 actaaaagtagatttaccatttgacccagcaatcccactactgggtatcctcccagagg--aaaataagtca---tatgaaaaagatacttgtac------------------------acacgtgtttatagcagcacagtccacaattacaaaaatatggaactagcattaatgcccatcaacaaatgaatgaattttaaaaacgtgatatatattccacacaccaacacaccatggaatactactcagccataaaaagtaataaaataatggcatttgcagcaa-cctggatggagttggagaccattattctaagtgaagtaactcgaga-----------------atggaaaaccaaacattgtacactctcacttaaaag i calJac3.chr3 I 7 I 282 s saiBol1.JH378162 8180329 348 - 15139346 attaaaagtagatttaccatttgacccagcaat----ctactgggtatctacccagaggaaaaaataagtca---tatgaaaaacatacttgtac------------------------atgcacgtgtacagcagcacagttcacaattacgaaaatattgaaccagcctaaatgcccatcaacaaatgaatagattttaaaaacatgatatatattcc--------acacaccatggaatactactcagccataaaaagtaataaaataatggcatttgcagcaagcctggatggagctggagaccattattctaagtgaagtaactcaggaatgtaaaaccaaacatcatggaaaaccagacatcgtatgttctcacttacaag i saiBol1.JH378162 I 7 I 1 s cebCap1.NW_016107439v1 6963969 332 - 7304997 attaaaagtagatttaccatttgacccagcaatccctctactgggtatttacccagagg--aaaataagtca---tatgaaaaagatacttgtac------------------------atgcatgtgtatagcagcacagttcacaatcacaaaaatattgaaccagcctaaatgcccatcaacaaacgaatagattttaaaaacatgatatatattcc--------acacaccatggaatacgactcagccataaaaagtaataaaataatggcatttgcagcaa-cctggatggagttggagaccattattctaagtgaagtaactcagga-----------------atggaaaaccaaacatcgtatgttctcacttataag i cebCap1.NW_016107439v1 I 59 I 1 s aotNan1.NW_018493494v1 9382039 331 - 11631747 attaaaagtagatttaccatttgacccagcaatccctctactgggtatccacccagagg--aaaataagtca---tatgaaaaagata-gtgtac------------------------atgcatgtgtatagcagtacagttcacaattacaaaaatattgaaccagcctaaatgcccatcaacaaatgaatagatttaaaaaacatgatatatattcc--------acacaccatggactactactcagccataaaaagtaataaaataatggcatttgcagcaa-cctggatggagttggagaccattattctaagtgaagtaactcagga-----------------atggaaaaccaaacattgtatgttctcacttataag i aotNan1.NW_018493494v1 I 7 I 1 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094645 1601 - 5279953 I e otoGar3.GL873602 8613845 3997 + 8790067 I e canFam3.chr13 48002965 3191 + 63241923 I a score=11042049.000000 s hg38.chr4_KI270787v1_alt 64252 1156 + 111943 ggtagctaagctatgaggaagcaaaggcataagaatgacataatggacattggggacttggatggggaagagtgggagggggatgagggat-aaaa--aactacacattgggtgcagtgtatactgcttgggtgatgggtgcaccaaaatctctgaaatcacagctaaagaacttatctatgtaaccaaataccacctgtttccaccaaattattga---aataataataacaaaaaaaTAGTTTCCCATTagctccgtgaagcatttat--ctttgtatcttatctcttggtacagtatttggcacagactcagcatttggtgaatgcttattgaatgagtggaAGAATGAGTAGAAAAGCCACTTG-----TCTAATTCTGAGAGTTATCTGGTTGAGACCATAACATTTTGACACAAATTGCAATTTCTTCATTTTTCTCTTCACTTTGCCCATCCACCCtgtaaggaacatggctgtgctttagtcaagcataagccgaggtaaacatccaaagtgactcagcaagtctagagtgcagatgcataactccacttgttatcacagccatgtagccataacatgggaaggctcatcatttggctctaagccagtaatgtctgtaaaaggtataactgccctgctgacactgtacaggcactggtgcccagagaa--agagagggagtcaaagttgtccgtttttcagacagacagaggggagccagggcacagcatggcttggctcgtgcccagagagagagaaagagttaagctgctgaccccgaaggcaggggagagccagccacacagctgtgtgtgggagccagctgctgagaggagccgcagggctggagcagacagcagagacaaagct--cagtgtgagagagctagtgggagtaagctgctgatgagagagctgctgaatgaataaaactacatttcacctgctta-cggcccccctgcgtgttctttcagctacatgcccatctgcctactcccctcgaacctcagcatgggctggaacctgaacccaagcAGGGCATTTGGCATAGTGATGAACCTGACACACTGTATCCCAGGAGGCACAAAACTGTGCAACCTCTCTACCCTTTCTCACTCCAGGAAGCATTTACCTGGAATTTAGTCTGGAGCCACAAACTCTAGAGCC s panTro5.chr4 119628945 1152 - 194502333 ggtagctaagctatgaggaagcaaaggcataagaatgacataatggacattggggacttggatggggaagagtgggaggggggtgagggat-aaaa--aactacacattgggtacagtgtatactgcttgggtgatgggtgcaccaaaatctctgaaatcacagctaaagaacttatctatgtaaccaaataccacctgtttccaccaaattattga---aataataataacaaaaaaaCAGTTTCCCATTagctccttgaagcatttat--ctttgtatcttatctcttggtacagtatttggcacagactcagcatttggtgaatgcttattgaatgagtggaAGAATGAGTAGAAAAGCCACTTG-----TCTAATTCTGAGAGTTATCTGGTTGAGAACATAACATTTTGACACAAATTGCAATTTCTTCATTTTTCTCTTCACTTTGCCCATCCACCCtgtaaggaacatggctgtgctttagtcaagcataagccgaggtaaacatccaaagtgactcagcaagtctagagtgcagatgcataactccacttgttatcacagccatgtagccataacatgggaaggctcatcatttggctctaagccagtaatgtctgtaaaaggtataactgccctgctgacactgtacaggcactggtgcccagagaa--agagagggagtcaaagttgtccgtttttcagacagacagaggggagccagggcacagcacggcttggctcgtgcccagagagagagaaagagttaagctgctgaccctgaaggcaggggagagccggccacacagctgtgtgtgggagccagctgctgagaggagccgcagggctggagcagacagcagagacaaagct--cagtgtgagagagctagtgggagtaagctgctgatgagagagctgctgaat----aaaactacatttcacctgctta-cggcccccctgcgtgttctttcagctacatgcccatctgcctactcccctcgaacctcagcatgggctggaacctgaacccaagcAGGGCATTTGGCATAGTGATGAACCTGACACACTGTATCCCAGGAGGCACAAAATTGTGCAACCTCTCTACCCTTTCTCACTCCAGGAAGCGTTTACCTGGAATTTAGTCTGGAGCCACAAACTCTAGAGCC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121042369 1152 - 195804263 ggtagctaagctatgaggaagcaaaggcataagaatgacataatggacattggggacttggatggggaagagtgggaggggggtgagggat-aaaa--aactacacattgggtgcagtgtatactgcttgggtgatgggtgcaccaaaatctctgaaatcacagctaaagaacttatctatgtaaccaaataccacctgtttccaccaaattattga---aataataataacaaaaaaaCAGTTTCCCATTagctccttgaagcatttat--ctttgtatcttatctcttggtacagtatttggcacagactcagcatttggtgaatgcttattgaatgagtggaAGAATGAGTAGAAAAGCCACTTG-----TCTAATTCTGAGAGTTATCTGGTTGAGAACATAACATTTTGACACAAATTGCAATTTCTTCATTTTTCTCTTCACTTTGCCCATCCACCCtgtaaggaacatggctgtgctttagtcaagcataagccgaggtaaacatccaaagtgactcagcaagtctggaatgcagatgcataactccacttgttatcacagccatgtagccataacatgggaaggctcatcatttggctctaagccagtaatgtctgtaaaaggtataactgccctgctgacactgtacaggcactggtgcccagagaa--agagagggagtcaaagttgtccgtttttcagacagacagaggggagccagggcacagcacggcttggctcgtgcccagagagagagaaagagttaagctgctgaccctgaaggcaggggagagccggccacacagctgtgtgtgggagccagctgctgagaggagccgcagggctggagcagacagcagagacaaagct--cagtgtgagagagctagtgggagtaagctgctgatgagagagctgctgaat----aaaactacatttcacctgctta-cggcccccctgcgtgttctttcagctacatgcccatctgcctactcccctcgaacctcagcatgggctggaacctgaacccaagcAGGGCATTTGGCATAGTGATGAACCTGACACACTGTATCCCAGGAGGCACAAAATTGTGCAACCTGTCTACCCTTTCTCACTCCAGGAAGCATTTACCTGGAATTTAGTCTGGAGCCACAAACTCTAGAGCC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4473613 1152 - 17550833 ggttgctaagctatgaggaagcaaaggcataagaatgacataacggacattggggacttggatggggaagagtgggaggggg-tgagggat-aaaaataactacacattgggtgcagtgtatactgcttgggtgatgggtgcaccaaaatatctgaaatcacagctagagaacttatctatgtaaccaaataccacctgttcccaccaaattattga---aataaTAATAACAAAAAAATAGTTTCCCATTagctccttgaagcatttat--ctttgtatcttatctcttggtacagtatttggcacagactcagcatttggtgaaggcttattgaatgagtggaAGAATGAGTAGAAAAGCCACTTG-----TCTAGTTCTGAGAGTTATCTGGTTGAGACCATAACATTTTGACACAAATTGCAATTTCTTCATTTTTCTCTTCACTTTGCCCACCCACCCtgtaaggaacatggctgtgctttagtcaagcataggccgaggtaaacatccaaagtgactcagcaagtctagagtgcagatgcataactccacttgtaatcacagccatgtagccataacatgggaaggctcatcatttggctctaagccagtaatgtctgtaaaagctacaactgccctgctgacactgcacaggcactggtgcccagagaa--agagagggagtcaaagttgtccgtttttcagacagacagaggggagccagggcacagcacagcttggctcgtgcccagagagagagaaagagttaagctgctgaccctgaaggcaggggagagccggccacatagctgtgtgtgggagccagctgctgagaggagccgcagggctggagcagacagcagagacaaggct--cagtgtgagagagctagtgggagtaagctgctgatgagagagctgctgaat----aaaactacatttcacctgctta-cgg-ccccctgcgtgttctttcagctacatgcccatctgcctactcccctcgaacctcagcatgggctggaacctgaacccaagcAGGGCATTTGGCATAGTGATGAACCTGACACACTGTATCCCAGGAGGCACAAAACTGTGCAACCTCTCTACCCTTTCTCACTCCAGGAAGCATCTACCTGGAATTTAGTCTGGAGCCACAAACTCTAGAGCC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69346988 1151 - 118206036 ggtagctaagctaggaggatgcaaaggcataagaatgacataatggacgttggggacttggatggggaagggtgggagggaggtgagggat-taaa--aactacacattgggtacagtgtatactgcttgggtgatgggtgcaccaaaatctctgaaatcacacctaaagaacttatctatgtaaccaaacaccacctgttcccaccaaattattga---aataaTAATAACAAAAAAATAGTTTCCCATTagctccttgaagcatttat--ccttgtatcttatctcttggtacggtatttggcacagactcagcatttggtgaatgcttattgaatgagtggatGAATGAGTAGAAAAGCCACTTG-----TCTAATTCTGAGAGTTATCTGGTTGAGACCATAACATTTTGACACAAATTGCAATTTCTTCATCTTTCTCTTCACTTTGCCCACCCGCCCtgtaaggaacatggctgtgctttggtcaagcataggccgaggtaaacatccagagtgactcagcaactctaga-tgcagttgcataactccacttgttatcacagccatgtagccataacatgagaaggctcgtcatttggctctaagccagtaatgtctgtaaaaggtataattaccctgctgacactgtacaggcattggtacccagagaa--agagagagagccaaagttgtccattttgcagacagacagaggggagccagggcacagcacagcttggctcgtgcccagagagagagaaagagttaagctgctgaccctgaaggcaggggagagccggccacacagctgtgtgtggaagccagctgctgagaggagccgcagggctggagcagacagcagagacaaggct--cagtgtgagagggctagtgggagtaagctgctgatgagagagctgctgaat----aaaactacatttcacctgctta-cggctcccctgcgtgttctttcggctacatgctcatctgcctactcccctcgaacctcagcaggggctggaacctgaacccaagcAGGGCATTTGGCATAGTGATGAACCTGACACACTGTATCCCACGAGGCACAAAATTGTGCAACCTCTCTACCCTTTCTCACTCCAGGAAGCATTTACCTGGAATTCAGTCTGGAGCCACAAACTCTAGAGCC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111555736 1142 - 190429646 ggtagctaagctatgaggatgcaaaggcataagaatgacataatggactttggagccttggatggggaagggtgggtggggcgcgagggat-aaaa--aactacacattgggtgcagtgtatactgcttgggtgatgggtgcaccaaaatctctgaaatcacacctaaagaacttatctatgtaaccaaacaccacctgttcccaccaaattattga---aataaTAGTAACAAAAAAAGAGTTTCccgttagctcctgaaagcatttat--ctttgtatcttatctactggtacagtattcggcacagactcagcatttggtgaatgctta-tgaatgagtggatGAATGAGTAGAAAAGCTACTTG-----TCTAATTCTGAGAGTTATCTGGTTGAGACCATAACATTTTGACACAAATTGCAATTCCTTCATTTTTCTCTTCACTTTGCCCACCCACCCtgtaaggaatatggctgtgctttggtcaagcataggccgaggtaaacatccagagtgactcagcaagtttagagcgcagatgcatcactccacttgttatcacagccatgtagccataacatgggaaggctcatcatttcgctctaagccagtattgtctgtaaaaggtataattgctctgctgacactgtacaggcatttgtgcccagagaa--aga----cagtcaaagctgtccatttt----gcacacagaggggagccagggcacagcacagcttggctcatgcccagagagagagaaagagttaagctgctgaccctgaaggcaggggagagccggccacacagctatgtgtgggagccagctgctgggaggagccacagggctggagcagacagtggagacaaggct--cagtgtgagagggctggtgcgagtaagctgctgctgagagagctgcggaat----aaaactacatttcacctgctta-tgg-ccgcctgagtgttctttcagctacatgcccatctgcctactcccctcgaacttcagcatgggctggaacctgaacccaagcAGGGCATTTGGCATAGTGATGAACCTGACACACCGTATCCCACGAGGCACAAAGCTTTGCAACGTCTCTACCCCTTCTCACTCCAGGAAGCATTTACCTGGAATTTAGTCTAGAGCCACAAACTCTAGAGCC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110724921 1143 - 189454096 ggtagctaagctatgaggatgcaaaggcataagaatgacataatggactttggagccttggatggggaagggtgggtggggggcgagggat-aaaa--aactacacattgggtgcagtgtatactgcttgggtgatgggtgcaccaaaatctctgaaatcacacctaaagaacttatctatgtaaccaaacaccacctgttcccaccaaattattga---aataaTAATAATAAAAAAAGAGTTTCccgttagctccttaaagcatttat--ctttgtatcttatctactggtacagtattcggcacagactcagcatttggtgaatgcttattgaatgagtggatGAATGAGTAGAAAAGCTACTTG-----TCTAATTCTGAGAGTTATCTGGTTGAGACCATAACATTTTGACACAAATTGCAATTCCTTCATTTTTCTCTTCACTTTGCCCACCCACCCtgtaaggaatatggctgtgctttggtcaagcataggccgaggtaaacatccagagtgactcagcaagtttagagcgcagatgcatcactccacttgttatcacagccatgtagccataacatgggaaggctcatcatttcgctctaagccagtattgtctgtaaaaggtataattgctctgctgacactgtacaggcatttgtgcccagagaa--aga----cagtcaaagctgtccatttt----gcacacagaggggagccagggcacagcacagcttggctcatgcccagagagagagaaagagttaagctgctgaccctgaaggcaggggagagccggccacacagctatgtgtgggagccagctgctgagaggagccacggggctggagcagacagtggagacaaggct--cagtgtgagagagctggtgcgagtaagctgctgctgagagagctgcggaat----aaaactacatttcacctgctta-tgg-ccgcctgagtgttctttcagctacatgcccatctgcctactcccctcgaacttcagcatgggctggaacctgaacccaagcAGGGCATTTGGCATAGTGATGAACCTGACACACCGTATCCCACGAGGCACAAAGCTTTGCAACGTCTCTACCCCTTCTCACTCCAGGAAGCATTTACCTGGAATTTAGTCTAGAGCCACAAACTCCAGAGCC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13291407 1143 + 26754465 ggtagctaagctatgaggatgcaaaggcataagaatgacataatggactttggagccttggatggggaagggtgggtggggggcgagggat-aaaa--aactacacattgggtgcagtgtatactgcttgggtgatgggtgcaccaaaatctctgaaatcacacctaaagaacttatctatgtaaccaaacaccacctgttcccaccaaattattga---aataaTAATAATAAAAAAAGAGTTTCCCGTTAGCTCCTTAAAGCattcat--ctttgtatcttatctactggtacagtattcggcacagactcagcatttggtgaatgcttattgaatgagtggatGAATGAGTAGAAAAGCTACTTG-----TCTAATTCTGAAAGTTATCTGGTTGAGACCATAACATTTTGACACAAATTGCAATTCCTTCATTTTTCTCTTCACTTTGCCCACCCACCCtgtaaggaatatggctgtgctttggtcaagcataggccgaggtaaacatccagagtgactcagcaagtttagagcgcagatgcataactccacttgttatcacagccatgtagccataacatgggaaggctcatcatttcgctctaagccagtattgtctgtaaaaggtataattgctctgctgacactgtacaggcatttgtgcccagagaa--aga----cagtcaaagctgtccatttt----gcacacagaggggagccagggcacagcacagcttggctcatgcccagagagagagaaagagttaagctgctgaccctgaaggcaggggagagccggccacacagctatgtgtgggagccagctgctgagaggagccacggggctggagcagacagtggagacaaggct--cagtgtgagagagctggtgccagtaagctgctgctgagaaagctgcggaat----aaaactacatttcacctgctta-tgg-ccgcctgagtgttctttcagctacatgcccatctgcttactcccctcgaacttcagcatgggctggaacctgaacccaagcAGGGCATTTGGCATAGTGATGAACCTGACACACCATATCCCACGAGGCACAAAGCTTTGCACCGTCTCTACCCCTTCTCACTCCAGGAAGCATTTACCTGGAATTTAGTCTAGAGCCACAAACTCTAGAGCC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4192684 1144 - 5137665 ggtagctaagctatgaagatgcaaaggcacaagaatgacataatggactttggggccttggatggcgaagggtgggtggggggcgagggat-aaaa--aactacacattgggtgcagtgtatactgcttgggtgatgggtgcaccaaaatctctgaaatcacacctaaagaacttatctatgtaaccaaacaccacctgttcccaccaaattattga---aataaTAATAACAAAAAAAGAGTTTCccgttagctccttaaagcatttat--ctttgtatcttatctactggtacagtattcggcacagactcagcatttggtgaatgcttattgaatgagtggatGAATGAGTAGAAAAGCTACTTG-----TCTAATTCTAAGAGTTATCTGGTTGAGACCATAACATTTTGACACAAATTGCAATTCCTTCATTTTTCTCTTCACTTTGCCCACCCACCCtgtaagaaatatggctgtgctttggtcaagcataggccgaggtaaacatccagagtgactcagcaagtttagagagcagatgcataactccacttgttatcacagccatgtagccataacatgggaaggctcatcatttcgctctaagccagtattgtctgtaaaaggtaaaattgctctgctgacactgtacaggcatttgtgcccagagaa--aga----cagtcaaagctgtccatttt----gcacacagaggggagccagggcacagcacagcttggctcatgcccagagagagagaaagaggtaagctgctgaccctgaaggcaggggagagccggccacacagctatgtgtgggagccagctgccgagaggagccacagggctggagcagacagtggagacaaggtt--cagtgtgagagagctggtgcgagtaagctgctgctgagagagctgctgaat----aaaactacatttcacctgcttattgg-ccgcctgagtgttctttcagctacatgcccatctgcctactcccctcgaacttcagcatgggctggaacctgaacccaagcAGGGCATTTGGCATAGTGATGAACCTGACACACCGCATCCCACGAGGCACAAAACTTTGCAACGTCTCTACCCCTTCTCACTACAGGAAGCATTTACCTGGAATTTAGTCTAGAGCCACAAACTCTAGAGCC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122902559 1141 - 135778131 ggtagctaagctatgaggatgcaaaggcataagaatgacataatggactttggggccttggatggggaagggtgggtggggggcgagggat-aaaa--aactacacattgggtgcagtgtatactgcttgggtgatgggtgcaccaaaatctctgaaatcacacctaaagaacttatctatgtaaccaaacaccacctgttcccaccaaattattga---aacaaTAGTCACAAAAAAATAGTTTCCCATTAGCTCCTTAAAGCatttat--ctttgtatcttatctaccggtacagtattaggcacagactcagcatttggtgaatgcttattgaatgagtggatGAATGAGTAGAAAAGCTACTTG-----TCTAATTCTGAGAGTTATCTGGTTGAGACCATAACATTTTGACACAAATTGCAATTCCTTCATTTTTCTCTTCACTTTGCCCACCCACCCtgtaacgaatatggctgtgctttggtcaagcataggccgaggtaaacatccagagtgactcagcaagtttcgagcgcagatgcataactccacttgttatcacagccatgtagccataacatgggaaggctcatcatttggctctaagccagtattgtctgtaaagggtataattgctctgctgacactgtacaggcatttgtgcccagagaa--aga----cagtcaaagctgtccatttt----gcacacagaagggagccagggcacagcacagcttggctcatgccc--agagagagaaagagttaagctgctgaccctgaaggcaggggagagccggccacacagctatgtgtgggagccagctgccgagaggagccgtagggctggagcagacagtggagacaaggct--cagtgtgagagagctggtgggagtaagctgctgctgagagagctgctgaat----aaaactacatttcacctgctta-tgg-ccacctgagtgttctttcagctacatgcccatctgcccactcccctcgaacttcagcatgggctggaacctgaacccaagcAGGGCATTTGGCATAGTGATGAACCTGACACACCGTATCCCATGAAGCACAAAACTTTGCAACATCTCTACCCGTTCTCACTCCAGGAAGCATTTACCTGGAATTTAGTCTAAAGCCACAAGCTCTAGAGCC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2014719 1143 + 2427316 ggtagctaagctatgaagatgcaaaggcacaagaatgacataatggactttggggccttggatggcgaagggtgggtgggggtcgagggat-aaaa--aactacacattgggtgcagtgtatactgcttgggtgatgggtgcaccaaaatctctgaaatcacacctaaagaacttatctatgtaaccaaacaccacctgttcccaccaaattattga---aataaTAATAACAAAAAAAGAGTTTCccgttagctccttaaagcatttat--ctttgtatcttatctactggtacagtattcggcacagactcagcatttggtgaatgcttattgaatgagtggatGAATGAGTAGAAAAGCTACTTG-----TCTAATTCTGAGAGTTATCTGGTTGAGACCATAACATTTTGACACAAATTGCAATTCCTTCATTTTTCTCTTCACCTTGCCCACCCACCCtgtaagaaatatggctgtgctttggtcaagcataggccgaggtaaacatccagagtgactcagcaagtttagagcgcagatgcataactccacttgttatcacagccatgtagccataacatgggaaggctcatcatttcgctctaagccagtattgtctgtaaaaggtaaaattgctctgctgacactgtacaggcatttgtgcccagagaa--aga----cagtcaaagctgtccatttt----gcacacagaggggagccagggcacagcacagcttggctcatgcccagagagagagaaagaggtaagctgctgaccctgaaggcaggggagagccggccacacagctatgtgtgggagccagcagccgagaggagccacggggctggagcagacagtggagacaaggct--cagtgtgagagagctggtgcgagtaagctgctgctgagagagctgctgaat----aaaactacatttcacctgctta-tgg-ccgcctgagtgttcttgcagctacatgcccatctgcctactcccctcgaacttcagcatggactggaacctgaacccaagcAGGGCATTTGGCATAGTGATGAACCTGACACACCGCATCCCACGAGGCACAAAGCTTTGCAACGTCTCTACCCCTTCTCACTCCAGGAAGCATTTACCTGGAATTTAGTCTAGAACCACAAACTCTAGAGCC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1309951 1143 + 1448899 ggtagctaagctatgaggatgcaaaggcataagaatgacataatggactttggggccttggatggggaagggtgggtggggggtgagggat-aaaa--aactacacattgggtgcagtgtatactgcttgggtgatgggtgcaccaaaatctctgaaatcacacctaaagaacttatctatgtaaccaaataccacctgttcccaccaaattattga---aataaTAATAACAAAAAAATAGTTTCCCATTAGCTCCTTAAAGCatttat--ctttgtatcttatctactggtacagtatttggcacagactcagcatttggtgaatgcttattgaatgagtggatGAATGAGTAGAAAAGCTACTTG-----TCTAATTCTGAGAGTTACCTGGTTGAGACCATAACATTTTGACACAAGTTGCAATTCCTTCATTTTTCTCTTCACTTTGCCCACCCACCCtgtaaggaatatggctgtgctttggtcaagcacaggccgaggtaaacatccagagtgactcagcaagtttagagtgcagatgcataactccacttgttatcacagccatgtagccataacatgggaaggctcatcatttgcctctaagccagtattgtctgtaaaaggtataattgctctgctgacactgtacaggcatttgtgcccagagaa--aga----cagtcaaagctgtccatttt----gcacacagaggggagccagggcacagcacagcttggctcatgcccagagaaagagaaagagttaaactgctgaccctgaaggcaggggagagccagccacacagctgtgtgtgggagccagctgccgagaggagccacagggctggagcagacagtggagacaaggct--cagtgtgagagagctggtgggagtaagctgttgatgagagagctgctgaat----aaaactacatttcacctgctta-cgg-ccacctgagtgttctttcggctacatgcccatgtgcctactcccctcgaacttcagcatgggctggaacctgaacccaagcAGGGCATTTGGCATAGTGATGAACCTGACACACCGTATCCCACGAGGCACAAAACTTTGCAACGTCTCTACCCTTTCTCACTCCAGAAAGCATTTACATGGAATTTATTCTAGAGCCACAAACTCTAGAGCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53020460 1137 - 190850796 gggagctaagccatgaggatgcaaaggcataagaatgacaaaatggactttggggacttggatggggaagggtgggaggggagtgaggaat-aaga--aactacacattgggtgcagtatatactgctcaggtgatgggtgcaccaaaatcttcgaaaccacacctaaatagcttgtctatgtaaccaaacactacctggtcccatcaaattattga---------aataaT-AATAAATAGTTTATCATTagctccttgaagcatttct--ctttatctcttatctcttggtacagtatttggcacagatgcagtgtttggtgaatgcttattgaatgagtgGCTGAATGAATAGAAAAACCACCTGTCTTTTCTAATTCTGAAAATTATCTGGTTGAGACCACAGCATTTTGACATAGATTGCAATTACTT-ATTTTTCTCTTCACGTTGCCCACCCACCCtgtaaggaacatggctgtgctttgatcaagaataggccgaggtaaatagccagagtgactctg--agtttagagcacagacctataactccacttgttctcacagccatgtagccataacatgggaaggctcatcatttggctctaagccactattgtctgtaaaaggtatcattgccctgcaaacattatacaggcactggtgcccagagaaagaga----gagtcaaagccgttcatttttcagacagatagaggggagccagggcacagcacagcttggcttgtgccc------caagaaagagttaagctgctgaccctgagggcaggtgagagccggccacacagctgtgtatgggagccagctgctgagaggagctgcagagctggagcagacagccaagacaagggggacagtgtgagagagctagtgtgagtaagctg-ggttgagcgagctgctg-at----gaaaccacatttcacctgctca-cag-ccctctgagtgttctttcagctatctgctcatccgcctactcctctcgaacctcagcatgggctggaacctgaccccaagcaagacaTTTGACATAGTGATGAACCTGACACACC-TCTTCCACCAGGCACAACATTTTGCAACCTCTCTGCCTCTTCTCACTTCAGAAAGCATTTACCTGGAATTTAGTCTGGAGCCACAAACTCTAGAGCC i calJac3.chr3 I 282 C 0 s saiBol1.JH378162 8180678 1140 - 15139346 gggagctaagccatgaggatgcaaaggcataagaatgacataatggactttgcggacctggatggggaagagtgggaggggaatgaggaat-aata--aactacacattgggtgcagtatacactggtcgggtggtgggtgcaccaaaatcttcgaaatcacacctaaatagcttatccatgtaaccaaacactacctggtcccaccaaattattga---------aataaT-AATAAATAGTTTGTCATTagctccttgaagcatttctccctttatctcttgtctcttgctacagtatctggcacagactcagtgtttggtgaatgcttactgaatgagtggatGAATGAATAGAAAAACCACCTGTCTTTTCTAATTCTGAAAATTATCTGGTTGAGACCATAGCATTTTGACAAAGATTGCAATTACTT-ATTTTTCTCTTCACGTTGCCCACCCACCCtgtaaggaacatggctgtgctttgatcaagaataggccaaggtaaatatccagagtgactctg--agtttacagcgcagacatataactccacttgttatcacagccatgtagccataacatgggaaggctcatcatttggctctaagccactattgtctgtaaaaggtataattgccctgctaacattatacagggatgggtgcccagagaa----a----gagtcaaagctgtccatttttcagacagatagaggggagccggggtacagtacagcttggctcctgccc--agagagagaaagagttaagctgctgactctgaggacaggagagagctggccacacagctgtgtgtgggagccagatgctgagaggagctgcagagctggagcagacagctgagacaagggggatggtgtgagggagctagtgtgagtaagctgctgatgagcgagctgctg-at----gaaaccacatttcacctgctca-cag-ccccctgggtgttctttcagctatctgctcatccgcctactgccctcgaacctcagcatgggctggaacctgaccacaagcaagacaTTTGACATAGTGATGAACCTGACACACC-TCTTCCACCAGGTACAACATTTTGCAGCTTCTCTGCCTCTTTTCACTCCAGAAAGCATTTACCTGGAATTTAGTCTGGAGCCacaaactctagagcc i saiBol1.JH378162 I 1 C 0 s cebCap1.NW_016107439v1 6964302 1148 - 7304997 gggagctaagccataatgatgcaaaggcataacaatgacttaatggactttggcgacttggatgggaaag-gtgggagaggagtgaggaat-aaaa--aactacacactgggtgcagtatatactgctcgggtgatggctgcaccaaaatcttcgaaatcacacctaaatagcttatctatgtaaccaaacactacctggtcccaccaaattactgaaataaTAATAATAAT-AATAAATAGTTTATCATTagctccttgaagcatttct--ctttatctcttatctcttggtacagtatttggcacagactcagtgtttggtgaatgcttattgaatgagtgGCTGAATGAACAGAAAAACCACCTGTCTTTTCTAATTCTGAAAATTATCTGGTTGAGACCATAGCATTTTGACACAGATTTCAATTACTT-ATTTTTCTCTTCACATTTCCCACCCACCCtgtaaggaacatggttgtgctttgatcaagaataggccgaggtaaatatccagagtgactctg--agtttagagcgcagacgtataactccacttgttatcacagccatgtagccataacatggaaaggcttatcatttggctccaagacactattgcctgtaaaaggtataattgccctgctaacactatacaggtgctggtgcccagagaa--aga----gagtcaaagctgtccatttttcagacagacagaggggagccagggcacagcacggcttggctcgtgccc--agagagagaaatagttaagctgctgaccctgaggacaggagagagctggccacacagctgtgtgtgggagccagctgctgagaggagctgcagagctggagcagacagctgagacaagggggacggtgtgagagagctagtgtgaataagctgctgatgagcgagctgctg-at----gaaaccacatttcacctgctca-cag-ccccctgagtgttctttcagctatctgctcatccgcctactcccctcaaacctcagcatgggctggaacctgaccccaagcaagacaTTTGACACAGTGATGAACCTGACACACC-TCTTCCACCAGGCACAACATTTTGCAACCTCTCTGCCTCTTCTCACTGCAGAAAGCATTTACCTGGAATTTAGTCTGGAGCCACAAACTCTAGAGCC i cebCap1.NW_016107439v1 I 1 I 374 s aotNan1.NW_018493494v1 9382371 1147 - 11631747 gggaactaagccatgaggatgcaaagccataagaatgacataatggactttggggacttggatggggaagggtggaaggggagtgaggaataaaaa--aactacacgttgggtgcagtatatactgctcgggtgatgg-tgcaccaaaatcttcgaaatcacacctaaatagcttatctatgtaaccaaacactacctggtgccatcgaattattga---aataaTAATAAT-AATAAATAGTTTATCATTagctccttgaaggatttct--ccttatctcttatctcttggtacagtatttggcacagactcagcgtttggcgaatgcttattgaatgagtggatGAATGAATAGAAAAACCACCTGTCTTTTCTAATTCTGAAAATTATCT-GTTGAGACCATAGCATTTTGACATAGATTGCAATTACTT-ATTTTTCTCTTCACGTTGCCCACCCACCCtgtaaggaacatggctgtgctttgatcaagaacaggccgaggtaaatatccagagtgactctg--agtttagagcgcagacgtataactccacttgttatcacagccatgtagccataacatgggaaggctcatcatttggctctaagccactattgtctgtaaaaggtataattgtcctgctaacattatacaggcgctggtgcccagagaaagaga----gagtcaaagctgtccatttttcagacagatagaggggagccagggcacagcatggcttggctcgtgccc--agagagagaaagagttaagctgctgaccctaagggcaggagagagctggccacacagctgtgtgtgggagccagctgctgagaggagctgcagagctggagcagatagccgagacaagggggacggtgtgagagagctagtgtgagtaagctgctgatgagcaagctgctg-at----gaaaccacatttcacctgctca-gag-ccccctgagtgttctttcagttatctgctcatctgcctgctcccctcgaacctcagcatgggatggaacctgaccccaagcAAGATATTTGACATAGTGATGAACCTGACACACC-TCTTCCACCAGGCACAACATTTTGCAACCTCTCTGCCTCTTCTCACTCCAGAAATCATTTACCTGGAATTTAGTCTGGAGACACAAACTCTAGAGCC i aotNan1.NW_018493494v1 I 1 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094645 1601 - 5279953 I e otoGar3.GL873602 8613845 3997 + 8790067 I e canFam3.chr13 48002965 3191 + 63241923 I a score=41055.000000 s hg38.chr4_KI270787v1_alt 65408 4 + 111943 CACC s panTro5.chr4 119630097 4 - 194502333 CACC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121043521 4 - 195804263 CACC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4474765 4 - 17550833 CACC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69348139 4 - 118206036 CACC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111556878 4 - 190429646 CACC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110726064 4 - 189454096 CACC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13292550 4 + 26754465 CACC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4193828 4 - 5137665 CACC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122903700 4 - 135778131 CACC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2015862 4 + 2427316 CACC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1311094 4 + 1448899 CACC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53021597 4 - 190850796 CACC i calJac3.chr3 C 0 I 6 s saiBol1.JH378162 8181818 4 - 15139346 cacc i saiBol1.JH378162 C 0 I 6 s aotNan1.NW_018493494v1 9383518 4 - 11631747 CACC i aotNan1.NW_018493494v1 C 0 I 5 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094645 1601 - 5279953 I e cebCap1.NW_016107439v1 6965450 374 - 7304997 I e otoGar3.GL873602 8613845 3997 + 8790067 I e canFam3.chr13 48002965 3191 + 63241923 I a score=3180330.000000 s hg38.chr4_KI270787v1_alt 65412 356 + 111943 AAAAA-----------AAAAAAAaaaa------gtaaatgggtaaagaaagacataccatgctaagggtaatcaaaagaaaacaggagtagctatattaacttcagacaacgcag-acttcacagcaagggaaattgtcaggaatagaaggggatattacatgatgataaatcggtcaataatcaaagaagacataacaatccttaatgtgtatatgcctaaaaa-agtgtcaaaatgtgaagcgaaaatggatagaacctcaaggaaaaatatttgtatccgct--tatagctggagact--------------ttagaaatgaacagatccagcaggcagaagagtcaggttaaactcaactgt-----accattaatcaactggaaataattg s panTro5.chr4 119630101 357 - 194502333 AAAAA-----------AAAAAAAAaaa-----agtaaatgggtaaagaaagacataccatgctaagggtaatcaaaagaaaacaggagtagctatattaacttcagacaacgcag-acttcacagcaagggaaattgtcaggaatagaaggggatattacatgatgataaatcggtcaataatcaaagaagacataacaatccttaatgtgtatatgcctaaaaa-agtgtcaaaatgtgaagcgaaaacggatagaacctcaaggaaaaatatttgtatccgct--tatagctggagact--------------ttagaaatgaacagatccagcaggcagaagagtcaggttaaactcaactgt-----accattaatcaactggaaataattg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121043525 353 - 195804263 AAAAA-----------AAAAaaaa---------gtaaatgggtaaagaaagacataccatgctaagggtaatcaaaagaaaacaggagtagctatattaacttcagacaacgcag-acttcacagcaagggaaattgtcaggaatagaaggggatattacatgatgataaatcggtcaataatcaaagaagacataacaatccttaatgtgtatatgcctaaaaa-agtgtcaaaatgtgaagcgaaaacggatagaacctcaaggaaaaatatttgtatccgct--tatagctggagact--------------ttagaaatgaacagatccagcaggcagaagagtcaggttaaactcaactgt-----accattaatcaactggaaataattg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4474769 362 - 17550833 aaaaa-----------aaaaaaaaaaaaaaaaagtaaatgggtaaagaaagacataccatgctaagggtaatcaaaagaaaacaggagtagctatattaacttcagacaacgcag-acttcacagcaagggaaattgtcaggaatagaaggggatattacatgatgataaatcggtcaataatcaaagaagacataacaatccttaatgtgtatatgcctaaaac-agtgtcaaaatgtgaagcgaaaacggatagaacctcaaggaaaaatatttgtatccgct--tatagctggagact--------------ttagaaatgaacagatccagtaggcagaagagtcaggttaaactcaactgt-----accattaatcaactggaaataattg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69348143 359 - 118206036 AAAAA-----------AAAAAAAAAAa---aaagtaaatggataaagaaagacataccatgctaagggtaatcaaaagaaaacaggagtagctatattaacttcagacaacgcag-acttcacagccagggaaactgtcaggaatagaaggggatattacatgatgataaatcggtcaataatcaaagaagacataacaatccttaatgtgtatatgcctaaaaa-agtgtcaaaatgtgaagcgaaaatggatagaacctcaaggaaaaatattcgtatccgct--tatagctggagact--------------ttagaaatgaaaagatacagccggcagaagagtcaggttaaactcaactgt-----accattaatcaactggatataattg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111556882 370 - 190429646 AAAAC-----------AAAACACAACC--aaaagtaaatgggtaaagaaagacataccatgctaaggctaatcaaaagaaaacaggagtagccatgttaacttcagacaaagcag-gcttcacagcaagggaaattatcaggaatagaagggg-----acatgatgataaatcggtcaataatcaaagaagacataacaatccttaatgtgtatatgcctaaaaacagtgtcaaaatgtgaagcgaaaatggatagaacctcaaggaaaaatacttgaatccgct--tatagctggagactttaacacccttctcttagaaatgaacagatccagcaggcagaagagtcaggttaaactcaactgt-----accattaatcaactgggtacaattg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110726068 370 - 189454096 AAAAC-----------AAAACACAACC--aaaagtaaatgggtaaagaaagacataccatgctaaggctaatcaaaagaaaacaggagtagccatgttaacttcagacaaagcag-gcttcacagcaagggaaattatcaggaatagaagggg-----acttgatgataaatcggtcaataatcaaagaagacataacaatccttaatgtgtatatgcctaaaaacagtgtcaaaatgtgaagcgaaaatggatagaacctcaaggaaaaatacttgaatccgct--tatagctggagactttaacacccttctcttagaaatgaacagatccagcaggcagaagagtcaggttaaactcaactgt-----accattaatcaactgggtacaattg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13292554 370 + 26754465 ACAAC-----------AAAACACAACC--aaaagtaaatgggtaaagaaagacataccatgctaaggctaatcaaaagaaaacaggagtagccatgttaacttcagacaaagcag-gcttcacagcaagggaaattatcaggaatagaagggg-----acatgatgataaatcggtcaataatcaaagaagacataacactccttaatgtgtatatgcctaaaaacagtgtcaaaatgtgaagcgaaaatggatagaacctcaaggaaaaatacttgaatccgct--tatagctggagactttaacacccttctcttagaaatgaacagatccagcaggcagaagagtcaggttaaactcaactgt-----accattaatcaactgggtacaattg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4193832 370 - 5137665 AAAAC-----------AAAACAAAACA--aaaagtaaatgggtaaagaaagacataccatgctaaggctaatcaaaagaaaacaggagtcgctatgttaacttcagacaaagcag-gcttcacagcaagggaaattatcaggaatagaagggg-----acatgatgataaatcggtcaataatcaaagaagatataacaatccttaatgtgtatatgcctaaaaacagtgtcaaaatgtgaagcaaaaacggatagaacctcaaggaaaaatacgtgaatccgct--tatagctggagactttaacacccttctcttagaaatgaacagatccagcaggcagaagagtcaggttaaactcaactgt-----accattaatcaactgggtacaattg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122903704 367 - 135778131 AAAAC-----------AAAACAAAACA--aaaagcaaatgggtaaagaaagacataccatgctaaggctaatcaaaaggaaacaggagtagctatgttaacttcagacaaagcag-gcttcacagcaaaggaaatt---aggaatagaagggg-----acatgatgataaatcggtcaataatcaaagaagacataacaatccttaatgtgtatatgcctaaaaaccgtgtcacaatgtgaagcgaaaatggatagaacctcaaggaaaaatacttgaatccgct--tatagctggagactttaacacccttctcttagaaatgaacagatccagcaggcagaagagtcaggttaaactcaactgt-----accattaatcaactggatacaattg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2015866 370 + 2427316 AAAAC-----------AAAACACAACA--aaaagtaaatgggtaaagaaagacataccatgctaaggctaatcaaaagaaaacaggagtagctatgttaacttcagacaaagcag-gcttcacagcaagggaaattatcaggaatagaagggg-----acatgatgataaatcggtcaataatcaaagaagacataacaatccttaatgtgtatatgcctaaaaacagtgtcaaaatgtaaagcaaaaacggatagaacctaaaggaaaaatacttgaatccgct--tatagctggagactttaacacccttctcttagaaatgaacagatccagcaggcagaagagtcaggttaaactcaactgt-----accattaatcaactgggtacaattg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1311098 370 + 1448899 AAAAC-----------AAAACAAAAGA--aaaagtaaatgggtaaagaaagacataccatgctaaggctaatcaaaagaaaacaggagtagctatattaacttcagacaaagcag-gcttcacagcaagggaaattatcaggaatagaagggg-----acatgatgataaatcagtcaataatcaaagaagacataacaatccttaatgtgtatatgcctaaaaacagtgtcaaaatgtgaagcgaaaacagatagaacctcaaggaaaaatacttgaatccgct--tatagctggagactttaacacccttctcttagaaatgaacagatgcagcaggcagaagagttaggttaaactcaactgt-----accattaatcaactggatacaattg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53021607 380 - 190850796 aaaaaaagaaagaaagaaagaaaAAGA--aaaagtaaatgggtagagaaagacataccatgctaaggctaatgaaaagaaaacagaagtagctatattaactccagacaaagcagaacttcacggagagggaaattatcaggaatagaagggg-----tcattat----actggattaaaaatcaaggaagacataacaatccttaatgtgtatgtgcataacaacagtgtcaaaacatgaagggaaaatggatagaaccttaaggaaaaatacttgaatccactactatagttggagactttaatacccttctattagaaatgaacagatct-gcaggcagacaagca----taaactcaactgtatataattgtatatcaactggatacaattg i calJac3.chr3 I 6 C 0 s saiBol1.JH378162 8181828 361 - 15139346 aaaaa---------------aaaaata--gaaagtaaatgggtagagaatgacataccatgctaaggctaatgaaaagaaaacagaagtagctatattaactgcagacaaagcagaacttcacagagagggaaattatcaggaatagaagggg-----tcattat----actggatcaaaaatcaaggaagacataacaatccttaatgtgtatgtgcataacaacagtgtcaaaacatgcatggaaaatggatagaacttcaaggaaaaatacttgaatccactattatagttggagactttaaca-----ctattagaaatgaacagatccagcaggcagacgagca----taaactcaactgtatataattgtatatcaactggatataattg i saiBol1.JH378162 I 6 C 0 s cebCap1.NW_016107439v1 6965824 366 - 7304997 aaaga---------------aaagaaa--gaaagaaaatgggtaaagaaagacataccatgctaaagctaatgaaaagaaaacagaagtagctatattaactccagacaaagcagaacttcacagagagggaaattatcaggaatagaagggg-----tcattat----actggatcaaaaatcaaggaagacataacaatccttaatgtgtatgtgcataacaacagtgtcaaaacatgaagggaaaatgcatagaacctcaaggaaaaatacttgaatccactattatagttggagactttaacacccttctattagaaatgaacagatccagcaggcagacgagca----taaactcaactgtatataattgtatatcaactggatataattg i cebCap1.NW_016107439v1 I 374 C 0 s aotNan1.NW_018493494v1 9383527 381 - 11631747 aaaaaagaaaagaaagaaagaaagaaa--gaaagtaaatgggtagagaaagacataccatgcaaaggctaatgaaaagaaaacagaagtagctatattaactccagacaaagcagaacttcacagagagggaaattattaggaatagaagggg-----tcattat----attggatcaaaaatcaaggaggacataacaatccttaatgtgtacgtgcataacaacagtgtcaaaacatgaagggaaaatggatagaacctcaaggaaaaatacttgaatccactattacagttggagactttaacacccttctattagaaatgaacagatccagcaggcaaatgagca----taaactcaactgtatataattgtatatcaactggatataattg i aotNan1.NW_018493494v1 I 5 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094645 1601 - 5279953 I e otoGar3.GL873602 8613845 3997 + 8790067 I e canFam3.chr13 48002965 3191 + 63241923 I a score=35072.000000 s hg38.chr4_KI270787v1_alt 65768 3 + 111943 aca s panTro5.chr4 119630458 3 - 194502333 aca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121043878 3 - 195804263 aca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475131 3 - 17550833 aca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69348502 3 - 118206036 aca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111557252 3 - 190429646 aca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110726438 3 - 189454096 aca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13292924 3 + 26754465 aca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4194202 3 - 5137665 aca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122904071 3 - 135778131 aca i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2016236 3 + 2427316 aca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1311468 3 + 1448899 aca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53021987 3 - 190850796 aca i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8182189 3 - 15139346 aca i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6966190 3 - 7304997 aca i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9383908 3 - 11631747 aca i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8617842 3 + 8790067 ACC i otoGar3.GL873602 I 3997 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094645 1601 - 5279953 I e canFam3.chr13 48002965 3191 + 63241923 I a score=262308.000000 s hg38.chr4_KI270787v1_alt 65771 22 + 111943 tGTGCTCCACATTTTGAAA------------TGT---------- s panTro5.chr4 119630461 22 - 194502333 tGTGCTCCACATTTTGAAA------------TGT---------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121043881 22 - 195804263 tGTGCTCCACATTTTGAAA------------TGT---------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475134 22 - 17550833 tGTGCTCCACATTTTGAAA------------TGT---------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69348505 22 - 118206036 tGTGCTCCACATTTTGAAA------------TGT---------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111557255 22 - 190429646 tGTGCTCCACATTTTGAAA------------TGT---------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110726441 22 - 189454096 tGTGCTCCACATTTTGAAA------------TGT---------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13292927 22 + 26754465 tGTGCTCCACATTTTGAAA------------TGT---------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4194205 22 - 5137665 tGTGCTCCACATTTTGAAA------------TGT---------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122904074 22 - 135778131 tGTGCTCCACATTTTGAAA------------TGT---------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2016239 22 + 2427316 tGTGCTCCACATTTTGAAA------------TGT---------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1311471 22 + 1448899 tGTGCTCCACATTTTGAAA------------TGT---------- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53021990 22 - 190850796 tGTGCTCCACATTTTGAGA------------TGT---------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8182192 22 - 15139346 tGTGCTCCACATTTTGAGA------------TGT---------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6966193 22 - 7304997 tGTGCTCCACATTTTGAGA------------TGT---------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9383911 22 - 11631747 tGTGCTCCACATTTTGAGA------------TGT---------- i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8617845 34 + 8790067 TGTGCTACACATTTTGAGACTTTACATAGGGCTT---------- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48006156 32 + 63241923 TGTGCAGCACATTTTGAGA------------CTTTATACAGTGC i canFam3.chr13 I 3191 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76414125 5012 + 151834684 I e dasNov3.JH568349 4094645 1601 - 5279953 I a score=649934.000000 s hg38.chr4_KI270787v1_alt 65793 53 + 111943 ---ATT----CACTAATTGGGTAATACATTTTTGTGGTGT-GTCTCTCC-TTTTAGACGTCT s panTro5.chr4 119630483 53 - 194502333 ---ATT----CACTAATTGGGTAATACATTTTTGTGGTGT-GTCTCTCC-TTTTAGACGTCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121043903 53 - 195804263 ---ATT----CACTAATTGGGTAATACATTTTTGTGGTGT-GTCTCTCC-TTTTAGACGTCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475156 53 - 17550833 ---ATT----CACTAATTGGGTAATACATTTTTGTGGTGT-GTCTCTTC-TTTTAGACGTCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69348527 53 - 118206036 ---ATT----CACTAATTGGGTAATACATTTTTGTGGTGT-GTCTCTCC-TTTTAGATGTCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111557277 53 - 190429646 ---ATT----CACTAATTGGGTAATACATTTTTGTGGTGT-GTCTCTCC-TTTTAGATGTCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110726463 53 - 189454096 ---ATT----CACTAATTGGGTAATACATTTTTGTGGTGT-GTCTCTCC-TTTTAGATGTCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13292949 53 + 26754465 ---ATT----CACTAATTGGGTAATACATTTTTGTGGTGT-GTCTCTCC-TTTTAGATGTCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4194227 53 - 5137665 ---ATT----CACTAATTGGGTAATACATTTTTGTGGTGT-GTCTCTCC-TTTTAGACGTCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122904096 53 - 135778131 ---ATT----CACTAATTGGGTAATACATTTTTGTGGTGT-GTCTCTCC-TTTTAGATGTCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2016261 53 + 2427316 ---ATT----CACTAATTGGGTAATACATTTTTGTGGTGT-GTCTCTCC-TTTTAGATGTCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1311493 53 + 1448899 ---ATT----CACTAATTGGGTAATATATTTTTGTGGTGT-GTCTCTCC-TTTTAGATGTCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53022012 53 - 190850796 ---AGT----CACTAACTGGGTAATACATTTTTGTGGTGT-GTCTCTCC-TCTTAGATTTCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8182214 53 - 15139346 ---AGT----CACTAATTGTGTAATACATTTTTGTGGTGT-GTCTCTCC-TCTTAGACTTCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6966215 53 - 7304997 ---AGT----CACCAATTAGGTAATACATTTTTGTGGCGT-GTCTCTCC-TCTCAGATTTCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9383933 53 - 11631747 ---AGT----CACTAATTGGGTAATACACTTTTGTGGTGT-GTCTCTCC-TTTTAGATTTCA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8617879 48 + 8790067 ---ATT----CACTAATTGGGTAATATATTTTT-----GT-ATCTCTCC-TTTTACATCACA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76419137 53 + 151834684 ---ACT----CACTAAGTGGGTCATGCATTTTTGTGGTCT-GTCTTTCT-TCTTGGATTAGA i mm10.chr5 I 5012 C 0 s canFam3.chr13 48006188 62 + 63241923 CTTATTAGAGCACTGATTGGACAATACATTTTTTATGTCTGGTCTCTCCTTTTTAAACCACA i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e dasNov3.JH568349 4094645 1601 - 5279953 I a score=1985767.000000 s hg38.chr4_KI270787v1_alt 65846 155 + 111943 AACTTCTTACTGGC-AAAAGTATTCTGCA--TTTCTCATTCTTTCCTTTCTCTGGGCCTTTATTCCTCATAT---------AAAAGTCTAGGCTG-TAAAAGGGAGGCATGAGCAGAAATGAGCTCTCAGAATACTGCTCTaacaaaaccaa----acataaaggaaataaa s panTro5.chr4 119630536 155 - 194502333 AACTTCTTACCGGC-AAAAGTATTCTGCA--TTTCTCATTCTTTCCTTTCTCTGGGCCTGTATTCCTCATAT---------AAAAGTCTAGGCTG-TAAAAGGGAGGCATGAGCAGAAATGAGCTCTCAGAATACTGCTCTaacaaaaccaa----acataaaggaaataaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121043956 155 - 195804263 AACTTCTTACCAGC-AAAAGTATTCTGCA--TTTCTCATTCTTTCCTTTCTCTGGGCCTGTATTCCTCATAT---------AAAAGTCTAGGCTG-TAAAAGGGAGGCATGAGCAGAAATGAGCTCTCAGAATACTGCTCTaacaaaaccaa----acataaaggaaataaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475209 155 - 17550833 AACTTCTTACTGGC-AAAAGTATTCTGCA--TTTCTCATTCTTTCCTTTCTCTGGGACTTTATTCCTCATAT---------AAAAGTCTAGGCTG-TAAAAGGGAGGCATGAGCAGAAATGAGCTCTCAGAATACTGCTCTaacaaaaccaa----acataaaggaaataaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69348580 155 - 118206036 AACTTCTTACTGGC-AAAGGTATTCTGCA--TTTCTCGTTCTTTCCTTTCTCTGGGCCTTTATTCCTCATAT---------AAAAGTCTAGGCTG-TAAAAGGGAGGCATGAGCAGAAATGAGCTCTCAGAATACTGCTCTaacaaaaccaa----acataaaggaaacaaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111557330 155 - 190429646 AACTTCTTACTGGC-AAAAGTATTCTGCA--TTTCCTGTTCTTTCCTTTCTCTGGGCCTTTATTCCTCATAT---------AAAAGTCTAGGCTG-TAAAAGGGAGGCACGAGCAGAAATGAACTCTCAGAATACTGCTCTaacaaaaccaa----acataaaggaaacaaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110726516 155 - 189454096 AACTTCTTACTGGC-AAAAGTATTCTGCA--TTTCCTGTTCTTTCCTTTCTCTGGGCCTTTATTCCTCATAT---------AAAAGTCTAGGCTG-TAAAAGGGAGGCACGAGCAGAAATGAACTCTCAGAATACTGCTCTaacaaaaccaa----acataaaggaaacaaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13293002 155 + 26754465 AACTTCTTACTGGC-AAAAGTATTCTGCA--TTTCCTGTTCTTTCCTTTCTCTAGGCCTTTATTCCTCATAT---------AAAAGTCTAGGCTG-TAAAAGGGAGGCACGAGCGGAAATGAACTCTCAGAATACTGCTCTaacaaaaccaa----acataaaggaaacaaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4194280 155 - 5137665 AACTTCTTACTGGC-AAAAGTATTCTGCA--TTTCCCGTTCTTTCCTTTCTCTGGGCCTTTATTCCTCATAT---------AAAAGTCTAGGCTG-TAAAAGGGAGGCACGAGCGGAAATGAACTCTCAGAATACTGCTCTaacaaaaccaa----acataaaggaaacaaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122904149 155 - 135778131 AACTTCTTACTGGC-AAAAGTATTCTGCA--TTTCCCGTTCTTTCCTTTCTCTGGGCCTTTATTCCTCATAT---------AAAAGTCTAGGCTG-TAAAAGGGAGGCACAAGCGGAAATGAACTCTCAGAATACTGCTCTaacaaaaccaa----acataaaggaaacaaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2016314 155 + 2427316 AACTTCTTACTGGC-AAAAGTATTCTGCA--TTTCCCGTTCTTTCCTTTCTCTGGGCCTTTATTCCTCATAT---------AAAAGTCTAGGCTG-TAAAAGGGAGGCACGAGCGGAAATGAACTCTCAGAATACTGCTCTaacaaaaccaa----acataaaggaaacaaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1311546 156 + 1448899 AACTTCTTACTGGC-AAAAGTATTCTGCA--TTTCCCGTTCTTTCCTTTCTCTGGGCCTTTATTCCTCATAT--------AAAAAGTCTAGGCTG-TAAAAGGGAGGCATGAGCAGAAATGAACTCTCAGAATACTGCTCTaacaaaaccaa----acataaaggaaacaaa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53022065 153 - 190850796 AACTTCTTACTGGC-AACAGTATTCTGCA--TTTCTCATTCTTTCCTTTCTGTGGGCCTTTATTCCCCGTAT---------AAAAGTCTAGGCTG-TTAAAGGGTGGCGGGAGCAGAAACGAGCTCTCAGAATACTGCTCTAACAAG--CAA----ACATAAAGGAAATAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8182267 153 - 15139346 AACTTCTTACTGGC-AACAGTATTCTGCA--TTTCTCATTCTTTTCTTTCTCTGAGCCTTTATTCCCTGTAC---------AAAAGTCTAGGCTG-TTAAAGGGTGGCAGGAGCAGAAATGAGCTCTCAGAATACTGCTCTAACAAG--CAA----ACATAAAGGAAATAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6966268 154 - 7304997 AGCTTCTTACTGGC-AACAGTATTCTGCA--TTTCTCATTCTTTCCTTTCTCTGGGCATTTATTCCCCATAT---------AAAAGTCTAGGCTGTTTAAAGGGTGGCAGGAGCAGAAACGAGCTCTCAGAATACTGCTCTAACAAG--CAA----ACATGAAGGAAATAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9383986 153 - 11631747 AACTTCTTACTGGC-AACAGTGTTTTGCA--TTTCTCATTCTTTCCTTTCTCTGGGCCTTTATTCCCTGTAT---------AAAAGTCTAGGCTG-TTAAAGGGTGGCGGGAGCAGAAACGAGCTCTCAGAATACTGCTCTAACAAG--CAA----ACATAAAGGAAATAAA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8617927 153 + 8790067 CACTTCTTACTGGCAAAAAATACTCTATA--TTTCTTATTCTTTCTCTTCTTT--GCCTTTATTCCCCATAG---------TAAAGTCCAGGATG-TACAAGGGATGTATGA-TATACATGATCTATCAAAACATTGCTATAACAAAAACAA----AAATAAATGCAATTAA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76419190 165 + 151834684 GACTCCCTACTGGC-AAAAGTAGTCTGTG--TTTCTTA---TTTCCTTTCTCTGAGCCTTCATTCTCTTTATAAAAAAAAAAAAAGTTCATGACG-TAAAAAGGAGGCATACGCACAAATGAGCTCTCTGAATACTGTTGTATCCAAATGAAGGGGGGAAAAAGTGGAATAA i mm10.chr5 C 0 C 0 s canFam3.chr13 48006250 146 + 63241923 GACTTCTTACTGGC-AAAAGTATGCTAAA--TTTCCATTTCTTCTCTTTCTCTGAGGCTTCATCCTCCATAT---------AAATGTCTGGGCTA-CAGGAGGGAGGCATGAGCATAAATGAGCTATCAGAATAGTACTATAACAAAACCGa----aaataaa--------- i canFam3.chr13 C 0 I 19 s dasNov3.JH568349 4096246 156 - 5279953 AGTTCCTTGCATCC-AAACATGCTCTACATGTTTCTTGCTATTTCCTTGTTCTGATTCTTTATTCTCCAGAT---------AAAAATTCAGGCAG-CAAGA-GTAGGCATCTGCACAAATGAGGTATCAGATCGCTGCTATAATAAAAACAA----AAATAGTTGGAAGAAA i dasNov3.JH568349 I 1601 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I a score=296083.000000 s hg38.chr4_KI270787v1_alt 66001 25 + 111943 acataaATTGAGCTGCTTTTAAGTT s panTro5.chr4 119630691 25 - 194502333 acataaATTGAGCTGCTTTTAAGTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121044111 25 - 195804263 acataaATTGAGCTGCTTTTAAGTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475364 25 - 17550833 acataaATTGAGCTGCTTTTAAGTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69348735 25 - 118206036 aAATAAATCGAGCTGCTTTTACGTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111557485 25 - 190429646 aAATAAATTGAGCTGCTTTTAAGCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110726671 25 - 189454096 aAATAAATTGAGCTGCTTTTAAGCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13293157 25 + 26754465 aAATAAATTGAGCTGCTTTTAAGCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4194435 25 - 5137665 aAATAAATTGAACTGCTTTTAAGCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122904304 25 - 135778131 aAATAAATTGAGCTGCTTTTAAGCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2016469 25 + 2427316 aAATAAATTGAGCTGCTTTTAAGCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1311702 25 + 1448899 aAATAAATTGAGCTGCTTTTAAGCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53022218 25 - 190850796 AAATAAATTGAGCTGCTTTTAAGCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8182420 25 - 15139346 AAATAAATTGAGCTGCTTTTAAGCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6966422 25 - 7304997 AAATAAATTGAGCTGCTTTTAAGCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9384139 25 - 11631747 AAATAAATTGAGCTGCTTTTAAGCT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8618080 21 + 8790067 AA--AAATTAATCggc--tcagcgc i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76419355 25 + 151834684 AAATAAACTGAGCTACTTTTAGGCT i mm10.chr5 C 0 I 13 s dasNov3.JH568349 4096402 24 - 5279953 AAAT-AATCAAGATGCTTTTAATCT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e canFam3.chr13 48006396 19 + 63241923 I a score=246081.000000 s hg38.chr4_KI270787v1_alt 66026 21 + 111943 CTATGGCCCTCAGCTGCTTGG s panTro5.chr4 119630716 21 - 194502333 CTATGGCCCTCAGCTGCTTGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121044136 21 - 195804263 CTATGGCCCTCAGCTGCTTGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475389 21 - 17550833 CTATGGCCCTCAGCTGCTTGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69348760 21 - 118206036 CTATGGCCCTCAGCTGCTTGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111557510 21 - 190429646 CTATGGCCCTCAGCTGCTTGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110726696 21 - 189454096 CTATGGCCCTCAGCTGCTTGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13293182 21 + 26754465 CTATGGCCCTCAGCTGCTTGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4194460 21 - 5137665 CTATGGCCCTCAGCTGCTTGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122904329 21 - 135778131 CTATGGCCCTCAGCTGCTTGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2016494 21 + 2427316 CTATGGCCCTCAGCTGCTTGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1311727 21 + 1448899 CTATGGCCCTCAGCTGCTTGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53022243 21 - 190850796 CTATGGCCCTTGGCTGCTTGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8182445 21 - 15139346 CTATGGCCCTCAGCTGCTTGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6966447 21 - 7304997 CTATGGCCCTGAGCTGCTTGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9384164 21 - 11631747 CTATGGCCCTCAACTGCTTGG i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8618101 15 + 8790067 ctatag--ctcaac----tgg i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4096426 21 - 5279953 ATGTGGCCCTCAGGAGCTTGG i dasNov3.JH568349 C 0 I 26 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76419380 13 + 151834684 I e canFam3.chr13 48006396 19 + 63241923 I a score=1647654.000000 s hg38.chr4_KI270787v1_alt 66047 177 + 111943 CTATtgtagcactggacccctattaactccaacagggatggca----------ccaggttcaagaggccaaataaaa--gac--ctgcagccagtgaagaa-aa-aatagggcttatttggagg-aacttacagggtggcccagtagtggtgggctggacgaaaagaaccacaaccgcttatgaaatgcaagca s panTro5.chr4 119630737 177 - 194502333 CTATtgtagcactggacccctattaactccagtagggatggca----------ccaggttcaagaggccaaataaaa--gac--ctgcagccagtgaagaa-aa-aatagggcttatttggagg-aacttacagggtggcccagtagtggtgggctggacgaaaagaaccacaaccgcttatgaaatgcaagca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121044157 177 - 195804263 CTATtgtagcactggacccctattaactccagtagggatggca----------ccaggttcaagaggccaaataaaa--gac--ctgcagccagtgaagaa-aa-aatagggcttatttggagg-aacttacagggtggcccagtagtggtgggctggacgaaaagaaccacaaccgcttatgaaatgcaagca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475410 177 - 17550833 CTATtgtagcactggacccttattaactccaatagggatggca----------ccaggttcaagaggccacataaaa--gac--ctgcagccagtgaagaa-aa-aatagggcttatttggagg-aacttacagggtggcccagtagtggtgggctggacgaaaagaaccacagctgcttatgaaatgcaagca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69348781 178 - 118206036 CTATtgtagcactgaaccgctattaactccaatagggatggca----------ccaggttcaaaaggccaaataaaa--gac--ctgcagccagtgaagaataa-aatagggcttatttggagg-aacttacagggtggcccagtagtggtgggctggatgaaaagaaccacaaccgcttatgaaatgcaagca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111557531 177 - 190429646 CTATtgtagcactggacctctattaactccaatagggatggaa----------tcaggttcaagaggccaaagaaaa--gac--ctgcagccagtgaagga-aa-catagggcttatttggggg-aacttacagggtggcccagtagtggtgggctggacgaaaagaaccacaaccgcttacgaaacgcaagca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110726717 177 - 189454096 CTATtgtagcactggacctctattaactccaatagggatggaa----------tcaggttcaagaggccaaagaaaa--gac--ctgcagccagtgaagga-aa-catagggcttatttggggg-aacttacagggtggcccagtagtggtgggctggacgaaaagaaccacaaccgcttacgaaacgcaagca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13293203 177 + 26754465 CTATtgtagcactggacctctattaactccaatagggatggaa----------tcaggttcaagaggccaaagaaaa--gac--ctgcagccagtgaagga-aa-catagggcttatttggggg-aacttacagggtggcccagtagtggtgggctggacgaaaagaaccacaaccgcttacgaaacgcaagca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4194481 177 - 5137665 CTATtgtagcactggacccctattaactccaatagggatggaa----------tcaggttcaagaggccaaagaaaa--gac--ctgcagccagtgaagga-aa-catagggcttatttggggg-aacttacagggtggcccagtagtggtgggctggacgaaaagaaccacaaccgcttatgaaacgcaagca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122904350 177 - 135778131 CTGTtgtagcactggacccctattaactccaatagggatggaa----------tcaggttcaagaggccaaagaaaa--gac--ctgcagccagtgaagga-aa-catagggcttatttggggg-aacttacagggtggcccagtagtggtgggctggacgaaaagaaccacaacagcttatgaaatgcaagca i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2016515 177 + 2427316 CTATtgtagcgctggacccctattaactccaatagggatggaa----------tcaggttcaagaggccaaagaaaa--gac--ctacagccagtgaagga-aa-catagggcttatttggggg-aacttacagggtggcccagtagtggtgggctggacgaaaagaaccacaaccacttatgaaatgcaagca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1311748 177 + 1448899 CTATtgtagcactggacccctattaactccaatagggatggaa----------ccaggttcaagaggccaaagaaaa--gac--ctgcagccagtgaagga-aa-catagggcttatttggggg-aacttacagggtggcccagtagtggtgggctggacgaaaagaactacaaccgcttatgaaacgcaagca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53022264 176 - 190850796 CTA-tgtagtgctggacccctattacctccaaa-gggatggtg----------ccaggttcaagaggctgaagaaga--gac--ctgcagccagtgaagga-aa-catagggcttatttggggaaaacttacagggtggcctaggagtggtgggctggacaaaatgaacaacaaccacttctgaaatgcatgca i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8182466 176 - 15139346 CTA-TGCAgtgctggacccctaatacctccaat-gggatggcg----------ccaggttcaagaggctgaagaaga--gac--ctgcagccagtgaagga-aa-catatggcttattcgggggaaactcacagggtggcccaggagtggtgggctggacaaaatgaaccgcaaccacttctgaaatgcatgca i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6966468 176 - 7304997 CTA-TGCAgtgctgggcccctattacctccaat-gggatggcg----------ccaggttcaagaggctgaagaaga--gaa--cggcagccagtgaagga-aa-catagcacttatttgggggaaacttacagggtggcccaggagtggtgggctggacaaaatgaaccgcaaccacttctgaaatgcgtgca i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9384185 177 - 11631747 CTA-tgtagtgctggacccctattacctgcaat-gggatgacg----------ccaggtttaagaggctgaagaaga--gac--ctgcagccagtgaaggg-aaccatagggcttatttgggagaaacttacagggtggcccaatagcggtgggctggacaaaatgaacagcaaccacttctgaaatgcatgca i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8618116 143 + 8790067 cta----------aggcgccagccacgtacacctaaggtggcggtttcgaatccccagcccggaccgccaaacaacaatgacggctgcaacca-------a-aa-aatag-------ccgggcg----ttgtggcgggcgcctgtggt---------------------cacagctacttgggaggcagaggca i otoGar3.GL873602 C 0 I 23 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76419380 13 + 151834684 I e dasNov3.JH568349 4096447 26 - 5279953 I e canFam3.chr13 48006396 19 + 63241923 I a score=648889.000000 s hg38.chr4_KI270787v1_alt 66224 65 + 111943 atttatatagca-tttttacttagcactctccccttagcaacctc-ttcatggcaaccctcatttct s panTro5.chr4 119630914 65 - 194502333 atttatatagca-tttttacttagcactctccccttagcaacctc-ttcatggcaaccctcatttct i panTro5.chr4 C 0 C 0 s panPan2.chr4 121044334 65 - 195804263 atttatatagca-tttttacttagcactctccccttagcaacctc-ttcatggcaaccctcatttct i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475587 66 - 17550833 atttatatagcattttttacttagcactctccccttagcaacctc-ttcatggcaaccctcatttCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69348959 65 - 118206036 atttatatagca-tttttacttagcaccctccccttagcaacctc-ttcatggcaaccctcatttCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111557708 65 - 190429646 atttatatagca-ttttcacttagcactctccccttagcaacctc-ttcatggcaactctcattCct i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110726894 65 - 189454096 atttatatagca-ttttcacttagcactctccccttagcaacctc-ttcatggcaactctcattCct i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13293380 65 + 26754465 atttatatagca-ttttcacttagcactctccccttagcaacctc-ttcatggcaactctcattCct i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4194658 65 - 5137665 atttatatagca-ttttcacttagcactctcgccttagcaacctc-ttcatggcaactctcattCct i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122904527 65 - 135778131 atttatatagca-ttttcacttagcactctccccttagcaacctc-ttcatggcacctctcattCCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2016692 65 + 2427316 atttatatagca-ttttcacttagcactctccccttagcaacctc-ttcatggcaactctcattCCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1311925 65 + 1448899 atttatatagca-ttttcacttagcactctccccttagcaacctc-ttcatggcaaccctcattCTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53022440 65 - 190850796 gtttatagagca-ttttcacttagcattctccccttagcaacctc-tctgtggtaaccctcatttct i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8182642 66 - 15139346 gttcatatagca-ttttcacttagccctctccccttagcaacctcttcaatagtaagcctcatttCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6966644 65 - 7304997 gtttatatagca-ttttcacttaccactcttcccttagcaacctc-ttcatggtaaccctcatttct i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9384362 65 - 11631747 gtttatatagca-ttttcacttagcactctccccttagcaacctc-ttcatggtaaccctcatttCT i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76419380 13 + 151834684 I e dasNov3.JH568349 4096447 26 - 5279953 I e otoGar3.GL873602 8618259 23 + 8790067 I e canFam3.chr13 48006396 19 + 63241923 I a score=315614.000000 s hg38.chr4_KI270787v1_alt 66289 32 + 111943 taagtgattgctgtcaggtgta----------tctgccatac s panTro5.chr4 119630979 32 - 194502333 taagtgattgctgtcaggtgta----------tctgccatac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121044399 32 - 195804263 taagtgattgctgtcaggtgta----------tctgccatac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475653 32 - 17550833 TAAGTGATTGCTttcaggtgta----------tctgccatac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69349024 31 - 118206036 TAAGTGATTGCTGtcaggtgta----------tccaccata- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111557773 32 - 190429646 taagtgattgctgtcaggtgta----------tctgccatac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110726959 32 - 189454096 taagtgattgctgtcaggtgta----------tctgccatac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13293445 32 + 26754465 taagtgattgctgtcaggtgta----------tctgccatac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4194723 32 - 5137665 taagtgattgctgtcaggtgta----------tctgccatac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122904592 32 - 135778131 TAAGTGACTGCTGtcaggtgta----------tctgccatac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2016757 32 + 2427316 TAAGTGATTGCTGtcaggtgta----------tctgccatat i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1311990 32 + 1448899 TAAGTGATTGCTGtcaggttta----------tctgccatac i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53022505 32 - 190850796 taagttattgctgtcaggtgca----------cctgccatat i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8182708 32 - 15139346 TAAGTTATTGCTGtcaggtgca----------cctgccatag i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6966709 32 - 7304997 taagttattgctgtcaggtgca----------cctgccatat i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9384427 32 - 11631747 TAAGTTATTGCTGtcagctgca----------cctgccatat i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8618282 42 + 8790067 ttggaggttgctgtgagctgtaacgctggcactctgcccagg i otoGar3.GL873602 I 23 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76419380 13 + 151834684 I e dasNov3.JH568349 4096447 26 - 5279953 I e canFam3.chr13 48006396 19 + 63241923 I a score=479223.000000 s hg38.chr4_KI270787v1_alt 66321 52 + 111943 ggggtatgtttaagttat-----------------------------gctttcaggtgcgtctaccata------caGTGATGATTA s panTro5.chr4 119631011 52 - 194502333 ggggtatgtttaagttat-----------------------------gctttcaggtgcatctaccata------caGTGATGATTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121044431 52 - 195804263 ggggtatgtttaagttat-----------------------------gctttcaggtgcatctaccata------caGTGATGATTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475685 52 - 17550833 ggggtatgtttaagttat-----------------------------gctttcaggtgcgtctaccata------caGTGATGATTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69349055 52 - 118206036 gggatatgtttaagttat-----------------------------gctgtcaggtgtgtctaccata------caGTGATGATTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111557805 52 - 190429646 ggcatatgtttaagttat-----------------------------gccgtcaggtgtgtctaccata------caGTGATGATTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110726991 52 - 189454096 ggcatatgtttaagttat-----------------------------gccgtcaggtgtgtctaccata------caGTGATGATTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13293477 52 + 26754465 ggcatatgtttaagttat-----------------------------gccgtcaggtgtgtctaccata------caGTGATGATTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4194755 52 - 5137665 ggcatatgtttcagttat-----------------------------gccgtcaggtgcgtctaccata------caGTGATGATTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122904624 52 - 135778131 ggcatatgtttaagttat-----------------------------gccgtcaggtgcgtctaccata------caGTGATGATTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2016789 52 + 2427316 ggcatatgtttaagttat-----------------------------gccgtcaggtgcgtctaccata------caGTGATGATTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1312022 52 + 1448899 ggcgtatgtttaagttat-----------------------------gccatcaggtgcgtctaccata------caGTGATGATTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53022537 53 - 190850796 ggggtatgcctaagttac----------------------------ccccgtcaggtgtgtctaccata------cagtgatgatta i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8182740 53 - 15139346 ggggtatgcttaagtttt----------------------------cgctgtcaggtgtgtctaccata------cagtgatgatta i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6966741 53 - 7304997 ggggtatgcctaagttac----------------------------cgctgtcaggtgtgtctaccata------caGTGATGATTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9384459 53 - 11631747 ggggtatgcctatgttac----------------------------cgctgtcaggtgtgtctaccata------caGTGATGATTA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8618324 87 + 8790067 cggacagcttgaggctctgtctcaaaaaaaaaaaaaaaaaTCAAACTGCTTTTAAGGACTTTGGCCTTAGCTAATCAGTAATTATTA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48006415 46 + 63241923 GAGGTGCTTTTAAGCTAT-----------------------------------ATGACTTTCTGATGGT------TGGTGATTACTA i canFam3.chr13 I 19 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76419380 13 + 151834684 I e dasNov3.JH568349 4096447 26 - 5279953 I a score=74613.000000 s hg38.chr4_KI270787v1_alt 66373 8 + 111943 TC---CTTGAT s panTro5.chr4 119631063 8 - 194502333 TC---CTTGAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121044483 8 - 195804263 TC---CTTGAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475737 8 - 17550833 TC---CTTGAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69349107 8 - 118206036 TC---CTTGAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111557857 11 - 190429646 TCCTTCTTGAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110727043 11 - 189454096 TCCTTCTTGAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13293529 11 + 26754465 TCCTTCTTGAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4194807 11 - 5137665 TCCTTCTTGAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122904676 11 - 135778131 TCCTTCTTGAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2016841 11 + 2427316 TCCTTCTTGAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1312074 11 + 1448899 TCCTTCTTGAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53022590 8 - 190850796 tC---CTCTAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8182793 8 - 15139346 tC---CTTGAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6966794 8 - 7304997 TC---CTTGAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9384512 8 - 11631747 TC---CTTGAT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8618411 8 + 8790067 CC---CTTGAT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48006461 8 + 63241923 TC---CTTGGT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4096473 8 - 5279953 ---TTCTTGAA i dasNov3.JH568349 I 26 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76419380 13 + 151834684 I a score=2117101.000000 s hg38.chr4_KI270787v1_alt 66381 171 + 111943 TT-TCAAAATGTTTCCATT----ACTTGTCTCATAGTCTAG-TTCATTCATGCACTTATTCTTAGATAGAGTAATCTATGGCCAGTCTGATATCAGCCGTGGTAAATA------------------------CATGACTCATATGTAAATTAAATACAT---------GAAGATGTACTGACCACATCAAATGCGTT-TGTGTCATGAAAT-------- s panTro5.chr4 119631071 167 - 194502333 TT-TCAAAATGTTTCCATT----ACTTGTCTCATAGTCTAG-TTAATTCATGCACTTATTCTTAGA----GTAATCTACGGCCAGTCTGATATCAGCCGTGGTAAATA------------------------CATGACTCATACGTAAATTAAATACAT---------GAAGATGTACTGACCACATCAAATGCGTT-TGTGTCATGAAAT-------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121044491 167 - 195804263 TT-TCAAAATGTTTCCATT----ACTTGTCTCATAGTCTAG-TTAATTCATGCACTTATTCTTAGA----GTAATCTACGGCCAGTCTGATATCAGCCGTGGTAAATA------------------------CATGACTCATACGTAAATTAAATACAT---------GAAGATGTACTGACCACATCAAATGCGTT-TGTGTCATGAAAT-------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475745 165 - 17550833 TT-TCAAAATGTTTCCATT----ACTTGTCTCATAGTCTAG-TTAATTCATGCACTTAG--ATAGA----GTAATCTACGGCCAGTCTGATATCAGCCATGGTAAATA------------------------CATGACTCATACGTAAATTAAATACAT---------GAAGATGTACTAACCACATCAAATGCGTT-TGTGTCATGAAAT-------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69349115 167 - 118206036 TT-TCAAAATGTTTCCTTT----ACTTGTCTCATAGTCTAG-TTAATTCATGCACTTATTCTTAGA----GTAATCTACGGCCGGTCTGATATCAGCCGTGGTAAATA------------------------CATGACTCATATGTAAATTAAATACAT---------GAAGATGGACTGACCACATCAAATGCGTC-TGTGTCATGAAAT-------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111557868 195 - 190429646 TT-TCAAAATGTTTCCATT----GCTTGTCTTATAGTCTAG-TTAATTCATGCACTTGTTCTTAGATAGTGTAATCTATGGCCAGTCTGATATCAGCTGTGGTAAATACATGACTCATATGTAAGTTAAATACATGACTCATATGTAAATTAAATACAT---------GAAGATGTATTGACCACATCAAATGCATT-TGTGTCATGAAAT-------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110727054 195 - 189454096 TT-TCAAAATGTTTCCATT----GCTTGTCTTATAGTCTAG-TTAATTCATGCACTTGTTCTTAGATAGTGTAATCTATGGCCAGTCTGATATCAGCTGTGGTAAATACATGACTCATATGTAAGTTAAATACATGACTCATATGTAAATTAAATACAT---------GAAGATGTATTGACCACATCAAATGCATT-TGTGTCATGAAAT-------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13293540 195 + 26754465 TT-TCAAAATGTTTCCATT----ACTTGTCTTATAGTCTAG-TTAATTCATGCACTTGTTCTTAGATAGTGTAATCTATGGCCAGTCTGATATCAGCTGTGGTAAATACATGACTCATATGTAAGTTAAATACATGACTCATATGTAAATTAAATACAT---------GAAGATGTATTGACCACATCAAATGCATT-TGTGTCATGAAAT-------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4194818 195 - 5137665 TT-TCAAAATGTTTCCATT----ACTTGTCTTATAGTCTAG-TTAATTCATGCACTTATTCATAGATAGTGTAATCTATGGCCAGTCTGATATCAGCTGTGGTAAATATATGACTCATATGTAAGTTAAATGCATGACTCATATGTAAATTAAATACAT---------GAAGATGTATTGACCACGTCAAATGCATT-TGTGTCATGAAAT-------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122904687 195 - 135778131 TT-TCAAAACGTTTCCATT----ACTTGTCTTATAGTCTAG-TTAATTCATGCACTTATTCTTAGACAGTGTAATCTATGGCCAGTCTGATATCAGCTGTGGTAAATACATGACTCATATGTAAGTTAAATACATGACTCATATGTAAATTAAATACAT---------GAAGATGTATTGACCACATCAAATGCATT-TGTGTCATGAAAT-------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2016852 195 + 2427316 TT-TCAAAATGTTTCCATT----ACTTGCCTTATAGTCTAG-TTAATTCATGCACTTATTCTTAGATAGTGTAATCTATGGCCAGTCTGATATCAGCTGTGGTAAATACATGACTTATATGTAAGTTAAACACATGACTCATATGTAAATTAAATACAT---------GAAGATGTATTGACCACATCAAATGCATT-TGTGTCATGAAAT-------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1312085 195 + 1448899 TT-TCAAAATGTTTCCATT----ACTTGTCTTATAGTCTAG-TTAATTCATGCACTTATTCTTAGATAGTGTAATCTATGGCCAGTCTGATATCAGCTGTGGTAAATACATGACTCATATGTAAGTTAAATACATGACTCATATGTAAATTAAATACAT---------GAAGATGTATTGACCACATCAAATGCATT-TGTGTCATGAAAT-------- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53022598 170 - 190850796 TT-TCAAAATGCTTCCATT----ACTTGTCTCATAGTCTAG-TTAACTCACGCACTTATTCTTGGATAGCGTAATATATGGCCAATCTT-TACCAGCTGTGATAAATA------------------------CATGACTCATATGTAAATTAAATACAT---------GAAGATGTATTGACCACATCAAATGCATT-TGTGTCATGAAAT-------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8182801 169 - 15139346 TT-TCAAGATGCTTCCATT----ACTTGTCTCATAGTCTAG-TTAATTCATGCACTTATTCTTGGATAGCATAATATATGGCCAATCTTATACCAGCTGTGGTAAATA------------------------CATGACTC--ATGTAAATTAAATACAT---------GAAGATGTATTGATCACATCAAAGGCATT-TGTGTCATGAAAT-------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6966802 156 - 7304997 TT-TCAAAATGCTTCCATT----ACTTGTCTCACAGTCTAG--------------TTATTCTTGGATAGTGTAATATATGGCCAATCTTATACCAGCTGTGGTAAATA------------------------CATGACTC--ATGTAAATTAAATACAT---------GAAGATGTATTGAACACATCAAATGCATT-TGTGTCATGAAAT-------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9384520 169 - 11631747 TT-TCAAAATGCTTCCATT----ACTTGTCTCATAGTCTAA-TTAATTCATGCACTTATTCTTGGATAGCGTAATATATGGCCAATCTTATACCAGCTGTGGTAAATA------------------------CATGACTC--ATGTAAATTAAATACAT---------GAAGATGTATTGACCACATCAAATGCATT-TGTGTCATGCAAT-------- i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8618419 169 + 8790067 TTCTTAAGATGTTTCCTCT----TCCTATCTCATAATCTAG-TTAATTCAGGCACTTATTCTTAGATAGTGCAATATATGGCTAGTCTGATACCAGTTGTAGTAAATA------------------------CATGA---ATATGTAAATTACACACAT---------GAAAATGTACTGGTCATGTCAAATGCATC-TGTGTCATGAAAT-------- i otoGar3.GL873602 C 0 I 112 s mm10.chr5 76419393 183 + 151834684 TC-TTGAAGTGTCTCTAGTCTAGTCTCGCCTCACAGTCTAG-TCAAATGGCGTCCTCATTCAGAGATAATGCTATAGGTAGCTGCCTTGAAATAAGTTGTGGTGAGAA------------------------CATGAGCCATATGTAGAACAAATACACAGAGATGCAGAAGATGTATTAGCTATAGC--GTGCATCGTATGTTATACAAT-------- i mm10.chr5 I 13 I 1 s canFam3.chr13 48006469 170 + 63241923 TT-TAAAAATGTTTCTACC----TTTTGTCT--TAGTCTAGTTTAATTCATACATCTAATCATAGGTAATATAACATATTGCTGGTCTTATATCAGCTGTGGTGAATA------------------------CATGAATCATATGTAAATTAAAAGCAT---------GATGATATATTTACCTCTTTGGATGCATT-TGTGTCATAAAAT-------- i canFam3.chr13 C 0 I 8 s dasNov3.JH568349 4096481 166 - 5279953 CT-TAAATATGTTTCCACT----TCTCTTCTTATATTCTAGTTTAATTCATTAACATACTCTTAGGTAACATACTATATGACAGGTCTGATATCAGTTGTGGTAAATA------------------------CATGA-TCATATGTAAATTAGAAGCAT---------GAAGAT-------------CAAATGCATT-TGTGTCATGAAATTTTAAAAT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I a score=33996.000000 s hg38.chr4_KI270787v1_alt 66552 11 + 111943 TAACAGCG----TT-A---- s panTro5.chr4 119631238 11 - 194502333 TAACAGTG----TT-A---- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121044658 11 - 195804263 TAACAGCG----TT-A---- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475910 11 - 17550833 TAACAGCG----TT-A---- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69349282 11 - 118206036 TAACAGCT----TT-A---- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111558063 10 - 190429646 TAACAGCA----TT------ i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110727249 10 - 189454096 TAACAGCA----TT------ i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13293735 10 + 26754465 TAACAGCA----TT------ i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4195013 10 - 5137665 TAGCAGCA----TT------ i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122904882 10 - 135778131 TAACAGCA----TT------ i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2017047 8 + 2427316 TAACAGCA------------ i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1312280 11 + 1448899 TAACAGCA----TTA----- i colAng1.NW_012119221v1 C 0 I 12 s calJac3.chr3 53022768 8 - 190850796 TA--AGTG----TT------ i calJac3.chr3 C 0 I 1 s saiBol1.JH378162 8182970 10 - 15139346 TAACAGTG----TT------ i saiBol1.JH378162 C 0 I 1 s cebCap1.NW_016107439v1 6966958 10 - 7304997 TAACAGTG----TT------ i cebCap1.NW_016107439v1 C 0 I 1 s aotNan1.NW_018493494v1 9384689 8 - 11631747 TA--AGTG----TT------ i aotNan1.NW_018493494v1 C 0 I 1 s mm10.chr5 76419577 14 + 151834684 TAAAAACGAATCTT------ i mm10.chr5 I 1 I 6 s canFam3.chr13 48006647 10 + 63241923 GAACAGTA----TT------ i canFam3.chr13 I 8 I 4 s dasNov3.JH568349 4096647 14 - 5279953 TAACAGCC----TT--GTAA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e otoGar3.GL873602 8618588 112 + 8790067 I a score=54087.000000 s hg38.chr4_KI270787v1_alt 66563 25 + 111943 AGAACACACATGTGCAGGTACGTGC s panTro5.chr4 119631249 25 - 194502333 AGAACACACATGTGCATGTACGTGc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121044669 25 - 195804263 AGAACACACATGTGCATGTACGTGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475921 25 - 17550833 AGAACACACATGTGCATGTACGTGC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69349293 23 - 118206036 AGAACACACATGTGCATGT--GTGC i nomLeu3.chr9 C 0 C 0 s calJac3.chr3 53022777 23 - 190850796 AGA--ACACATTTGCATGTGCAAGC i calJac3.chr3 I 1 C 0 s saiBol1.JH378162 8182981 25 - 15139346 AGAACACACATTTGCATGTGCATGC i saiBol1.JH378162 I 1 C 0 s cebCap1.NW_016107439v1 6966969 25 - 7304997 AAAACACACATTTCCATGTGCATGC i cebCap1.NW_016107439v1 I 1 C 0 s aotNan1.NW_018493494v1 9384698 23 - 11631747 AAA--ACATATTTGCATGTGCGTGC i aotNan1.NW_018493494v1 I 1 C 0 s mm10.chr5 76419597 16 + 151834684 AGAACTGACGCTTGAG--------- i mm10.chr5 I 6 C 0 s canFam3.chr13 48006661 17 + 63241923 AGAACACACATGTGTGC-------- i canFam3.chr13 I 4 C 0 s dasNov3.JH568349 4096661 19 - 5279953 GGA--ACACACGTGCATGTGC---- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e otoGar3.GL873602 8618588 112 + 8790067 I e colAng1.NW_012119221v1 1312291 12 + 1448899 I e manLeu1.NW_012104388v1 2017055 0 + 2427316 C e chlSab2.chr7 122904892 0 - 135778131 C e cerAty1.NW_012001307v1 4195023 0 - 5137665 C e macNem1.NW_012012466v1 13293745 0 + 26754465 C e rheMac8.chr5 111558073 0 - 190429646 C e macFas5.chr5 110727259 0 - 189454096 C a score=69139.000000 s hg38.chr4_KI270787v1_alt 66588 17 + 111943 ACACATAC------ACACA----GTGC s panTro5.chr4 119631274 21 - 194502333 acacacac------acacacacaGTGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121044694 17 - 195804263 ACACACAC------ACACA----GTGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475946 16 - 17550833 ACA-ACAC------ACACA----GTGC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69349316 17 - 118206036 ACACATAC------ACACC----GGGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111558073 9 - 190429646 --------------ACACA----GTGC i rheMac8.chr5 C 0 I 4 s macFas5.chr5 110727259 9 - 189454096 --------------ACACA----GTGC i macFas5.chr5 C 0 I 4 s macNem1.NW_012012466v1 13293745 9 + 26754465 --------------ACACA----GTGC i macNem1.NW_012012466v1 C 0 I 4 s cerAty1.NW_012001307v1 4195023 9 - 5137665 --------------ACACA----GTGC i cerAty1.NW_012001307v1 C 0 I 4 s chlSab2.chr7 122904892 9 - 135778131 --------------ACACA----GTGC i chlSab2.chr7 C 0 I 4 s calJac3.chr3 53022800 17 - 190850796 ACACATAC------ACACA----GTGC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183006 17 - 15139346 ACACATAC------ACACA----GTGC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6966994 17 - 7304997 ACACATAC------ACACA----GTGC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9384721 17 - 11631747 ACACATAC------ACACA----GTGC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8618700 13 + 8790067 ACACATGC------ACACA-------- i otoGar3.GL873602 I 112 C 0 s mm10.chr5 76419613 14 + 151834684 ---CATGC------GCACA----ATGC i mm10.chr5 C 0 C 0 s canFam3.chr13 48006678 15 + 63241923 ACACAAAC------AAAAA----AT-- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4096680 18 - 5279953 ACACACACCAACAGACAC--------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e colAng1.NW_012119221v1 1312291 12 + 1448899 I e manLeu1.NW_012104388v1 2017055 0 + 2427316 C a score=1218692.000000 s hg38.chr4_KI270787v1_alt 66605 104 + 111943 TCA----CA---GATGCTACTA---ATTTCTGACAAGTGATTGCCCTGCCTGATTCAGTGATGCTCCAGGAATAGACCAAGCAGTAGGAAAGAATAGAAGACCCAGAAACAGAT s panTro5.chr4 119631295 108 - 194502333 TCAGTCACA---GATGCTACTA---ATTTCTGACAAGTGATTGCACTGCCTGATTCAGTGATGCTCCAGGAATAGACCAAGCAGTAGGAAAGAATAGAAGACCCAGAAACAGAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121044711 108 - 195804263 TCAGTCACA---GATGCTACTA---ATTTCTGACAAGTGATTGCACTGCCTGATTCAGTGATGCTCCAGGAATAGACCAAGCAGTAGGAAAGAATAGAAGACCCAGAAACAGAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4475962 108 - 17550833 TCAGTCACA---GATGCTACTA---ATTTCTGACAAGTGATTGCACTGCCTGATTCAGTGATGCTCCAGGAATAGACCAAGCAGTAGGAAAGAATAGAAGACCCAGAAACAGAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69349333 108 - 118206036 TCAGTCACA---GATGCTACTA---ATTTCTGACAAGTGATTGCACTGCCTGATTCAGTGATGCTCCAGGAATAGACCAAGCAGTAGGAAAGAATAGAAGACCCAGAAACAGAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111558086 104 - 190429646 ----TCACA---GATGCTACTA---ATTTCTGACAAGTGATTGCACTCCCTGATTCAGTGATCCTCCAGGAATAGACCAAGCAGTAGGAAAGAATAGAAGACCCAGAAACAGAT i rheMac8.chr5 I 4 C 0 s macFas5.chr5 110727272 104 - 189454096 ----TCACA---GATGCTACTA---ATTTCTGACAAGTGATTGCACTCCCTGATTCAGTGATCCTCCAGGAATAGACCAAGCAGTAGGAAAGAATAGAAGACCCAGAAACAGAT i macFas5.chr5 I 4 C 0 s macNem1.NW_012012466v1 13293758 104 + 26754465 ----TCACA---GATTCTACTA---ATTTCTGACAAGTGATTGCACTCCCTGATTCAGTGATCCTCCAGGAATAGACCAAGCAGTAGGAAAGAATAGAAGACCCAGAAACAGGT i macNem1.NW_012012466v1 I 4 C 0 s cerAty1.NW_012001307v1 4195036 104 - 5137665 ----TCACA---GATGCTACTA---ATTTCTGACAAGTGATTGCACTCCCTGATTCAGTGATGCTCCAGGAATAGACCAAGCAGTAGGAAAGAATAGAAGACCCAGAAACAGAT i cerAty1.NW_012001307v1 I 4 C 0 s chlSab2.chr7 122904905 104 - 135778131 ----TCACA---GATGCTACTA---ATTTCTGACAAGTGATTGCACTCCCTGATTCAGTGATGCTCCAGGAATAGACCAAGCAGTAGGAAAGAATAGAAGACCCAGAAACAGAT i chlSab2.chr7 I 4 C 0 s manLeu1.NW_012104388v1 2017055 82 + 2427316 ---------------------------TTCTGACAAGTGATTGCACTCCCTGATTCAGTGATGCTCCAGGAATAGACCAAGCAGTAGGAA-----AGAAGACCCAGAAACAGAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1312303 104 + 1448899 ----TCACA---GATGCTACTA---ATTTCTGACACGTGATTGCACTCCCTGATTCAGTGATGCTCCAGGAATAGACCAAGCAGTAGGAAAGAATAGAAGACCCAGAAACAGAT i colAng1.NW_012119221v1 I 12 C 0 s calJac3.chr3 53022817 102 - 190850796 TCAGT---------TGCTACTA---ATTTCTGACAAGTGATTGCACTGCCTGATTCAGTGATGCTCCAGGAATAGACCAAGCAGTAGGAAAGAATAGAAGACCTAGAAACTGAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183023 108 - 15139346 TCAGTCACA---GATGCTACTA---ATTTCTGACAAGTGATTGCACCGCCTGATTCAGTGATGCTCCAGGAATAGACCAAGCAGTAGGAAAGAATAGAAGACCCAGAAACAGAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6967011 107 - 7304997 TCAGTCAGA---GATGCTAC-A---ATTTCTGACAAGTGATTGCACTGCCTGATTCAGTGATGCTCCAAGAATAGACAAAGCAGTAGGAAAGAATAGAAGACCCAGAAACAGAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9384738 108 - 11631747 TCAGTCACA---GATGCTACTA---ATTTCTGACAAGTGATTGCACTGCCTGATTCAGTGATGCTCCAGGAATAGACCAAGCAGTAGGAAAGAATAGAAGACCCAGAAACAGAT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8618713 100 + 8790067 -----CAAATATGATGATACTG---ATTTCTGACAGATGATTG-----TCTGATTCAGTGGTTTTCTAGGAATAGGCTAAGCAGTAGAAGAGAATA-AAAATCCAGAAATAGAT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76419627 75 + 151834684 ---------------------------TACTGGC-----------CTGCCTGATCTGGAGGCGCTCCAAGAACAGAGAGAATGGCAGAATAAGAGA-AGGTTCCAGAAATAGAT i mm10.chr5 C 0 C 0 s canFam3.chr13 48006693 89 + 63241923 -------------ATGCCACTG---ATTTCTGATAGATGATTGCACTGCCTGATTTGGTGGTACTCTAGAA--------AGTCGTA-CAGAGAATAAGAGATCCAGAAATTGAT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4096698 103 - 5279953 ----ATACA---CATCCCACTACTCGTTTCTGACACATGATTACACTGCTTGATATGGT-ATGCTC-AGGAATTGCCAGGGCAGTGGAAAAGAATA--ATTCACAGAAATAAGT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I a score=243647.000000 s hg38.chr4_KI270787v1_alt 66709 19 + 111943 GC--ACTCATAGGGTTTATAT s panTro5.chr4 119631403 19 - 194502333 GC--ACTCATAGGGTTTATAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121044819 19 - 195804263 GC--ACTCATAGGGTTTATAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4476070 19 - 17550833 GC--ACTCATAGGGTTTATAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69349441 21 - 118206036 GCAAACTCATAGGGTTTATAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111558190 21 - 190429646 GCAAACTCATAGGGTTTATAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110727376 21 - 189454096 GCAAACTCATAGGGTTTATAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13293862 21 + 26754465 GTAAACTCATAGGGTTTATAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4195140 21 - 5137665 GCAAACTCATAGGGTTTATAA i cerAty1.NW_012001307v1 C 0 I 307 s chlSab2.chr7 122905009 21 - 135778131 GCAAACTCATAGGGTTTATAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2017137 21 + 2427316 GCAAACTCATAGGGTTTATAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1312407 21 + 1448899 GCAAACTCATAGGGTTTATAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53022919 21 - 190850796 GCAAACTCATAGGGTTTATGT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183131 21 - 15139346 GCAAACTCATAGGGTTTATAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6967118 21 - 7304997 GCAAACTCATAGGGTTTATAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9384846 21 - 11631747 GCAAACTCATACGGTTTATAT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8618813 21 + 8790067 GCAAACTTATAAGGTTTATAT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76419702 21 + 151834684 GCAAACTTATGTTTTTTATAC i mm10.chr5 C 0 C 0 s canFam3.chr13 48006782 21 + 63241923 ACAAACTCATAAAGTTTATAT i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e dasNov3.JH568349 4096801 0 - 5279953 C a score=2650480.000000 s hg38.chr4_KI270787v1_alt 66728 267 + 111943 AACAGTTTTAGTATTTTTAACCTGTGCT----attcattcagtcatttattcattcaacaactatttattgaatatgtactaaatgtcaggcactgttct-aagtatcctgaataagaa-------------aaaaatcaaaaactattttttattttgtttaatctatggcagctcaatgagaaaggtactag--gaagtccattttatcaatggaca----------ggcataagtaaa------------tttacttgaccaaataaatataa-------------------ccaacaagtg---gtaaccatggggttcagattcta s panTro5.chr4 119631422 267 - 194502333 AACAGTTTTAGTATTTTTAACCTGTGCT----ATTCATTCAGtcatttattcattcaacaactatttattgaatatgtactaaatgtcaggcactgttct-aagtatcctgaataagaa-------------aaaaatcaaaaactattttttattttgtttaatctatggcagctcaatgagaaaggtactag--gaagtccattttatcaatggaca----------ggcataagtaaa------------tttacttgaccaaataaatataa-------------------ccaacaagtg---gtaaccatggggttcagattcta i panTro5.chr4 C 0 C 0 s panPan2.chr4 121044838 267 - 195804263 AACAGTTTTAGTATTTTTAACCTGTGCT----ATTCATTCAGtcatttattcattcaacaactatttattgaatatgtactaaatgtcaggcactgttct-aagtatcctgaataagaa-------------aaaaatcaaaaactattttttattttgtttaatctatggcagctcaatgagaaaggtactag--gaagtccattttatcaatggaca----------ggcataagtaaa------------tttacttgaccaaataaatataa-------------------ccaacaagtg---gtaaccatggggttcagattcta i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4476089 267 - 17550833 AACAGTTTTAGTATTTTTAACCTGTGCT----ATTCATTCAAtcatttattcattcaacaactatttattgaatatgtactaaatgtcaggcactgttct-aagtatcctgaataagaa-------------aaaaatcaaaaactattttttattttgtttaatctatggcagctcaatgagaaaggtactag--gaagtccattttatcgatggaca----------ggcagacgtaaa------------tttacttgaccaaataaatataa-------------------ccaacaagtg---gtaaccatggggttcagattcta i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69349462 267 - 118206036 AACAGTTTTAGTATTTTTAACCTGTGCT----attcattcaatcatttattcattcaacaactatttattgaatatgtactaaatgtcaggcactgttct-aggtatcctgaataagac-------------aaaaatcaaaaaatattttttattttgtttaatccacggcagctcaatgagaaatgtactag--gaagtccattttatcgatggaca----------ggcagacgtaaa------------tttacttgaccaaataaatataa-------------------ccaacaattg---gtaaccacggggttcagattcta i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111558211 257 - 190429646 AACAGTTTTAGTATTTTTAACCTGTGCT----attcattcaatcatttatttattcaAcaactatttattgaat---------atgtcaggcactgttct-gggtatcctgaataagat-------------aaagatcaaaaaata-tttttattttgtttaatccatggcagctcaatgagaagtgtactgt--gaagtccattttattgatggaca----------ggcagaggaaaa------------tttacttgaccaaataaatataa-------------------ccaacaagtg---gtaatcatggggttcagattcta i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110727397 257 - 189454096 AACAGTTTTAGTATTTTTAACCTGTGCT----ATTCATTCAATCatttatttattcaacaactatttattgaat---------atgtcaggcactgttct-gggtatcctgaataagat-------------aaagatcaaaaAATA-TTTttattttgtttaatccatggcagctcaatgagaagtgtactgt--gaagtccattttattgatggaca----------ggcagaggaaaa------------tttacttgaccaaataaatataa-------------------ccaacaagtg---gtaatcatggggttcagattcta i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13293883 257 + 26754465 AACAGTTTTAGTATTTTTAACCTGTGCT----attcattcaatcatttatttattcaAcaactatttattgaat---------atgtcaggcactgttct-gggtatcctgaataagat-------------aaagatcaaaaaata-tttttattttgtttaatccatggcagctcaatgagaagtgtactgt--gaagtccattttattgatggaca----------ggcagaggaaaa------------tttacttgaccaaataaatataa-------------------ccaacaagtg---gtaatcatggggttcagattcta i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4195468 257 - 5137665 aaCAGTTTTAGTATTTTTAACCTGTGCT----ATTCATTCAATCatttatttattcaacaactatttattgact---------atgtcaggcactgttct-gggtatcctgaataagat-------------aaagatcaaaaAATA-TTTttgttttgtttaatccatggcagctcaatgagaagtgtactgt--gaagtccattttattgatggaca----------ggcagaggaaaa------------tttacttgaccaaatgaatataa-------------------ccaacaagtg---gtaatcatggggttcagattcta i cerAty1.NW_012001307v1 I 307 C 0 s chlSab2.chr7 122905030 257 - 135778131 AACAGTTTTAGTATTTTTAACCTGTGCT----ATTCATTCAATCatttatttattcaacaactatttattgaat---------atgtcaggcactgttct-gggtatcctgaataagat-------------aaagatcaaaaAGTA-TTTttattttgtttaatccatggcagctcaatgagaagtgtactgt--gaagtccattttattgatggaca----------ggtagaggaaaa------------tttacttgaccaaataaatataa-------------------ccaacaaggg---gtaatcatggggttcagattcta i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2017158 257 + 2427316 AACAGTTTTAGTATTTTTAACCTGTGCT----ATTCATTCAATCatttatttattcaacaactatttattgaat---------atgtcaggcactgttct-gggtatcctgaataagat-------------aaagatcaaaaaata-tttttattttgtttaatccatggcagctcaatgagaagtgtactgt--ggagtccattttattgatggaca----------ggcagaggaaaa------------tttacttgaccaaataaatataa-------------------ccaactagtg---gtaatcatgggtttcagattcta i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1312428 256 + 1448899 ACCAGTTTTAGTA-TTTTAACCTGTGCT----ATTCATTCAATCatttatttattcaacaactatttattgaat---------atgtcaagcactgttct-gggTATCCTGAATAAGAT-------------AAAGATCGAAAAATA-TTTttattttgtttaatccatggcagctcaatgagaagtgtactat--gaagtccattttattgatggaca----------ggcagaggaaaa------------tttacttgaccaaataaatataa-------------------ccaacaagtg---gtaatcatggggttcagattcta i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53022940 250 - 190850796 AACAGTTTTAGAATTTTTAACTTGCGCT----ATTC----------------ATTCaacaactatttattgaatatgaactaaatgtcaggcactgttct-aggtatcctgaataaaat-------------aaagatccaaaaata-tttttattttgtttaatccacagcagctcaatgagaaatgtactat--tatgtcccttttatcgatggaca----------ggtagaggtaaa------------ttgacatgaccaaataaatataa-------------------ccaacaagtg---gtaaccaggcagttcagattcta i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183152 244 - 15139346 AACAGTTTCAGAATTTTTAACTTGCGCT------------------------ATTCaacaactatttattgaatatgaactaaatgtcaggcactgctct-aggtatcctgaataaaat-------------aaagatcaaaaaatattttttattttgtttgatctacagcagctcagtgagaaatgtactat--tatgtccattttattgatggaca----------ggtagaggtaaa------------tttacatgaccaaataaatataa-------------------c---caagtg---gtaaccatgcagttcagattcta i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6967139 248 - 7304997 AACAGTTGTAGAATTTTTAACTTGCGCT----ATTC----------------ATTCaacaactatttattgaatatgaactaaatgtcaggcactgttct-aggtatcctgaataaaat-------------aaagatccaaaaatattttttattttgtttgatctacagcagctcaatgagaaatgtactat--tatgtccattttattgatggata----------ggtagaggtaaa------------tttacatgaccaaataaatataa-------------------c---caagtc---gtaagcgtgcagttcagattcta i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9384867 247 - 11631747 AACAGTTTTAGAATTTTTAACTTGCGCT----ATTC----------------ATTCaacaactatttattgaaaatgaactaaatgtcaggcactgctct-aggtatcctgaata-----------------aaagatccaaaaatattttttattttgtttaatctacagcagctcaatgagaaatgtactat--tatgtccattttattgatggaca----------ggtagaggtaaa------------tttacatgaccaaataaatacaa-------------------ccaacaagtg---gtaaccatgcagttcagattcta i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8618834 254 + 8790067 TACAATTTTAGTATTTTT-ACCTGT-------------TCATTCatttatttgttcaacaaatatttattgaat-------aagtgtca-gcgctgctcc-atatgtcctgaataaaag-------------taaaaaaaaaagTTT-TTCttatcctatttaa-ctacaacagcccagtgaaaaatgtactat--tatacccattttataggtggaaaaattgagcctgaacgaggtaca------------tctacttgaccaaatacatacaa-------------------ctagtaagtg---gcaacaatgggattcagatt--- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76419723 293 + 151834684 ATCAGTTTTAGTCTCTTT-ATCTGTACT----ATACGTTCCATCattcacttattcagcaaatacttactagctatgaa----ttgctgggcaccattttaaggtaccggaagtagaat-------------aatgaT--AAGGTTTTCTCTTATTTTATTTAATCTACAGCATTCCAATGAAGGATGTACTATTATAAGTACA---TATTTAAATATA----------AGTATCTGTATAAATTTCCACATTTCTACATGG-AAAACAAGTCTGAAAGAAGTGACTCAGCTTCTCCAAGTAGTGAGTGTAGTCATAGGTCTCAGACTGTa i mm10.chr5 C 0 I 129 s canFam3.chr13 48006803 278 + 63241923 ACCTGTTTTAGTA-TTTTGACCTATGCTGTGCATTCATTGAATCatccattcattcagcaagtattgagtatct--------gatattgggtactgttct-aagtatccagatgaaaacagatgcaacaagaagagataagaCAATCCTCTCTTATCTTTTTAATCAACAGCATA-----GAAGACTGTCCCAA--tatgtcca-tttatatgtgaaaaaactgagggtggaaaggatata------------tgtacttgcccaaatacatataa-------------------gtagtaag-g---ataacattaggattcagatccag i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e dasNov3.JH568349 4096801 0 - 5279953 C a score=668609.000000 s hg38.chr4_KI270787v1_alt 66995 61 + 111943 gtctatatgtcttcaaagcctatgtgctt-tcaccacaccctgttgccTTCCACCATAGAAA s panTro5.chr4 119631689 61 - 194502333 gtctatatgtcttcaaagcctatgtgctt-tcaccacaccctgttgccTTCCACCATAGAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045105 61 - 195804263 gtctatatgtcttcaaagcctatgtgctt-tcaccacaccctgttgccTTCCACCATAGAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4476356 61 - 17550833 gtctatatgtcttcaaagcctatgtgctt-tcaccacaccctgttgccTTCCACCATAGAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69349729 61 - 118206036 gtctatatgtcttcaaagcctatgtgctt-tcaccacaccctgttgccTTCCACCATAGAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111558468 61 - 190429646 gtgtatatgtcttcaaagcctatgggcct-tcaccacaccctgttgccctccACCATAGAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110727654 61 - 189454096 gtgtatatgtcttcaaagcctatgggcct-tcaccacaccctgttgccctccACCATAGAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13294140 61 + 26754465 gtgtatatgtcttcaaagcctatgggcct-tcaccacaccctgttgccctccACCATAGAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4195725 61 - 5137665 gtgtatatgtcttcaaagcctatgggcct-tcaccacaccctgttgccctccACCATAGAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122905287 61 - 135778131 gtgtatatgtcttcaaagcctatgggcct-tcaccacaccctgttgccctccACCATAGAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2017415 61 + 2427316 gtgtatatgtcttcaaagcctatgggcct-tcaccacaccctgttgccctccACCATAGAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1312684 61 + 1448899 gtgtatatgtcttcaaagcctgtgggcct-tcaccacaccctgttgccctccACCATAGAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53023190 61 - 190850796 gcctgtatatcttccaagcctatgtgttt-tcacgacaccctcttgccTTCCACCACAGTAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183396 61 - 15139346 gcctgtatatcttcaaagcctatgtgttt-tcaccacaccctgttgccTTCCACCACAGTAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6967387 61 - 7304997 gtctgtatgtcttcaaagcctatgtgttt-tcaccacaccctgttgccTTCCACCACAGTAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9385114 61 - 11631747 gcctgtacatcttcaaagcctatacgttt-tcaccataccctgttgccTTCCACCACAGTAA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8619088 47 + 8790067 --------------aaagtccagttactt-tgaccacactctgttgttttccaccacaGTAA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48007081 62 + 63241923 gtctgtatgtcatcaaggcccatgcacttctcaACATATCCTGTTAATTTCAACCTCACTAA i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76420016 129 + 151834684 I e dasNov3.JH568349 4096801 0 - 5279953 C a score=693518.000000 s hg38.chr4_KI270787v1_alt 67056 60 + 111943 ACATTTAGAAGGGATTAGCCTGAA-TTTCAAATCAA-AAATTTCAAATGACTCTGTCAATGA s panTro5.chr4 119631750 60 - 194502333 ACATTTAGAAGGGATTAGCCTGAA-TTTCAAATCAA-AAATTTCAAATGACTCTGTCAATGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045166 60 - 195804263 ACATTTAGAAGGGATTAGCCTGAA-TTTCAAATCAA-AAATTTCAAATGACTCTGTCAATGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4476417 60 - 17550833 ACATTTAGAAGGGATTAGCCTGAA-TTTCAAATCAA-AAATTTCAAATGACTCTGTCAATGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69349790 60 - 118206036 ACATTTAGAAGGGATTAGCCTAAA-TTTCAAATCAA-AAATTTCAAATGACTCTGTCAATGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111558529 60 - 190429646 ACATTTAGAAAGGATTAGCCTGAC-TTTCAAATAAA-AAATTTCAAATGACTCTGTCAATGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110727715 60 - 189454096 ACATTTAGAAAGGATTAGCCTGAC-TTTCAAATAAA-AAATTTCAAATGACTCTGTCAATGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13294201 60 + 26754465 ACATTTAGAAAGGATTAGCCTGAC-TTTCAAATACA-AAATTTCAAATGACTCTGTCAATGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4195786 60 - 5137665 ACATTTAGAAAGGATTAGCCTGAC-TTTCAAATAAA-AAATTTCAAATGACTCTGTCAATGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122905348 61 - 135778131 ACATTTAGAAAGGATTAGCCTGACTTTTCAAATAAA-AAATTTCAAATGACTCTGTCAATGT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2017476 60 + 2427316 ACATTTAGAAAGGATTAGCCTGAC-TTTCAAATAAA-AAATTTCAAATGACTCTGTCAATGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1312745 60 + 1448899 ACACTTAGAAGAGATTAGCCTGAC-TTTCAAATAAA-AAATTTCAAATGACTCTGTCAATGT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53023251 59 - 190850796 ACATTTAGAA-GGATTAGCCTGAA-TTTCAAATCAA-AAATTTCAAATGACCCTGTCAATGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183457 60 - 15139346 ACGTTTAGAAGGGATTAGCCTAAA-TTTCAAATCAA-AAATTTCAAATGACCCTGTCAACAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6967448 60 - 7304997 ACATTTAGAAGGGATTTGCCTGAA-TTTCAAATCAA-AAATTTCAAATGACCCTGTCAATGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9385175 60 - 11631747 ACATTTAGAAGGGATTAGCCTGAA-TTTCAAATCAA-AAATTTCAAATGACCCTGTCAATGA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8619135 60 + 8790067 ACATTTATAAGGGATTAACCTGAA-TTTCAGATAAA-AAATATCAAATGATTCTGTCAGTGA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76420145 59 + 151834684 aagttgtgatagaactagccagca-taCCTAACACATAAAATAAAAATAA--AGGTTAACAG i mm10.chr5 I 129 C 0 s canFam3.chr13 48007143 56 + 63241923 ACATTTATAGCAGATTATCTTAAA-TTTCCAATAAA-AAATATCA----ACTCTATTAATGA i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e dasNov3.JH568349 4096801 0 - 5279953 C a score=1836067.000000 s hg38.chr4_KI270787v1_alt 67116 150 + 111943 C-TTTCTTTTAAAACTGTTAAGAACTGTCCATGGTAAATGCACACCTTAGAAAGCTGCATGTTTCTTGATATTGTTCTTGTGCTCTCTGTGCAAGAATACAGTAAAAATCCTAGAA--------------GACAATGT-AAAAATAATGAATCTCTCT------TTCTCTCT s panTro5.chr4 119631810 151 - 194502333 C-TTTCTTTTAAAACTGT-AAGAACTGTCCATGGTAAATGCACACCTTAGAAAGCTGCATGTTTCTTGATATTGTTCTTGTACTCTCTGTGCAAGAATACAGTAAAAATCCTAGAA--------------GACAATGT-AAAAATAATGAATCTCTCT----CTTTCTCTCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045226 151 - 195804263 C-TTTCTTTTAAAACTGT-AAGAACTGTCCATGGTAAATGCACACCTTAGAAAGCTGCATGTTTCTTGATATTGTTCTTGTACTCTCTGTGCAAGAATACAGTAAAAATCCTAGAA--------------GACAATGT-AAAAATAATGAATCTCTCT----CTTTCTCTCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4476477 147 - 17550833 C-TTTCTTTTAAAACTGT-AAGAACTGTCCATGGTAAATGCACACCTTAGAAAGCTGCATGTTTCTTGATATTGTTCTTGTACTCTCTGTGCAAGAATACAGTAAAAATCCTAGAA--------------GACAATGT-AAAAATAATGAATCTCT--------TTCTCTCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69349850 147 - 118206036 C-TTTCTTTTAAAACCAG-AAGAACTGTCCATAGTAAATGCATACCTTAGAAAGCTGCATGTTTCTTGATATTGTTCTTGTACTCTCTGTGCAAGAATACAGTAAAAATCCTAGAA--------------GACAATAT-AAAAATAATGAATCTCT--------TTCTCTCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111558589 155 - 190429646 C-TTTCTTTTAAAACCAT-AAGAACTGTCCACAGTAAATGCATACCTTAGAAAGCTGCATGTTTCTTGATATTGTTCTTGTACTCCCTGTGCAAGAATACAGTAAAAATCCTAGAA--------------GACAATGT-AAAAATAATGAAtctctctctttctctctctct i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110727775 155 - 189454096 C-TTTCTTTTAAAACCAT-AAGAACTGTCCACAGTAAATGCATACCTTAGAAAGCTGCATGTTTCTTGATATTGTTCTTGTACTCCCTGTGCAAGAATACAGTAAAAATCCTAGAA--------------GACAATGT-AAAAATAATGAAtctctctctttctctctctct i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13294261 155 + 26754465 C-TTTCTTTTAAAACCAT-AAGAACTGTCCACAGTAAATGCATACCTTAGAAAGCTGCATGTTTCTTGATATTGTTCTTGTACTCCCTGTGCAAGAATACAGTAAAAATCCTAGAA--------------GACAATGT-AAAAATAATGAAtctctctctttctctctctct i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4195846 155 - 5137665 C-TTTCTTTTAAAACCAT-AAGAACTGTCCACAGTAAATGCATACCTTAGAAAGCTGCATGTTTCTTGATATTGTTCTTGTACTCTCTGTGCAAGAATACAGTAAAAATCCTAGAA--------------GACAATGT-AAAAATAATGAAtctctctctttctctctctct i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122905409 155 - 135778131 C-TTTCTTCTAAAACCGT-AAGAACTGTCCACAGTAAATGCATACCTTAGAAAGCTGCATGTTTCTTGATATTGTTCTTGGACTCTCTGTGCAAGAATACAGTAAAAATCCTAGAA--------------GACAATGT-AAAAATAATGAAtctctctctttctttctctct i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2017536 155 + 2427316 C-TTTCTTTTAAAACCAT-AAGAACTGTCCACAGTAAATGCATACCTTAGAAAGCTGCATGTTTCTTGATATTGTTCTTGTACTCTCTGTGCAACAATACAGTAAAAATCCTAGAA--------------GACAATGT-AAAAATAATGAAtctctctctttctctctctct i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1312805 155 + 1448899 C-TTTCTTTTAAAACCGT-AAGAACTGTCCACAGTAAATGCATACCTTAGAAAGCTGCATGTTTCTTGATATTGTTCTCGTACTCTCTGTGCAAGAATACAGTAAAAATCCTAGAA--------------GACAATGT-AAAAATAATGAAtctctctctttctctctctct i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53023310 148 - 190850796 CTTTTCTTTTAAAACCAT-AAGAACTGTCCGTAGGAAATGCATACCTTAGAAAGCTGTATGTTTCTTCTTGTTGTTCTTGTACTCTCTGTGCAAGAACACAGTACAAATCCTAAAA--------------GGCAATGT-AAAGACAGTGAGTCCCT--------TTCCTTCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183517 148 - 15139346 GTTTTCTTTTAAAACCAT-AAGAACTGTCCGTAGGAAATGCATACCTTAGAGAGCCTTATGTTTCTTAATATTGTTCTTGTATTCTCTGTGCAGGAATACAGTAAAAATCCTAAAA--------------GGCAATGT-AAAAATAGTGAATCTCT--------TTCCTTCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6967508 148 - 7304997 CTTTTCTTTTAAAACCAT-AAGAACTGTCCATAGGAAATGCATACCTTAGAAAGCTGTATGTTTCTTGATATTGTTCTTGTACTCTCTATGCAAGAATACAGTAAAAATCCTAAAA--------------GGCAATGT-AAAAATAGTGAATCTCT--------TTCCTTCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9385235 148 - 11631747 CTTTTCTTTTAAAGCCAT-AAGAACTGTCTGTAGGAAATGCATACCTTAGAAAGCTGTATGTTTCTTAATACCGTTCTTGTACTCTCTGTGCAAGAATACAGTAAAAATCCTAAAA--------------GGCAATGT-AAAAATAGTGAATCTCT--------TTCCTTCT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8619195 139 + 8790067 A-TTTCCCTTAAAACTGT-AAGAGTTGTCTACAGAAAAAGCATACCTTAAAAAGCTGCACATTTCTCGATATTATTCTTGTACTCTCTTTGCAAGAATGCAATAAAAATCCTAAA-----------------CAGAGTAAAAAATAATGA--------------CTCTCTTT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76420204 123 + 151834684 G-TATTTTTT-------T---------TCTACAGGAAACCTGTGACTTAGGAAGCCGAATGTTTCCTGATAGTGCTCTTGAACCCTCTATGCAAAGGAACAATTAAAACCCTAAGT--------------CACAAAGT-AAAA-----GAGT------------TTCACTGT i mm10.chr5 C 0 C 0 s canFam3.chr13 48007199 132 + 63241923 C-TTTCTTTT-AAACTGG-AAGAATTGTCTACAGAAAATGTGTACCTTAGAGAACTGCATGTTTCCTGGTATTGTGCTTGTACT--CTGTGTAAGAATACAGCAAAAATCCTAAAA---------------ACAAAAT-TAAAAT-------------------CTCACCAC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4096801 164 - 5279953 C-TTTCCTGTCAAATTGT-AAAAACTGTTAACAGGAAATGCATACCTT----AGCTGCATGTTTCCTCATATTGTTTTTGTACTCTCTGTGCAAGAATACAGTAAATATCCTAAAAAAAAAAAAAAAAAAGGTAAAGTAAAAAATAATGAGTATTTCTCTCT--TTCTCTCT i dasNov3.JH568349 C 0 I 62 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I a score=155189.000000 s hg38.chr4_KI270787v1_alt 67266 37 + 111943 GT--------acacacac--------------acacacacacacacacac---------------------aagact---aca s panTro5.chr4 119631961 37 - 194502333 GT--------acacacac--------------acacatacacacacacac---------------------aagact---aca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045377 37 - 195804263 GT--------acacacac--------------acacatacacacacacac---------------------aagact---aca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4476624 35 - 17550833 GT--------acacacac--------------acac--acacacacacac---------------------aagact---aca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69349997 45 - 118206036 GTCcacacacacacacac--------------acacacacacacacacac---------------------aagact---aca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111558744 65 - 190429646 gt--------ccacacat----acacacacacacacacacacacacacaa--agactacaaacatacata-aagact---aca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110727930 67 - 189454096 gt--------ccacacat--acacacacacacacacacacacacacacaa--agactacaaacatacata-aagact---aca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13294416 69 + 26754465 gt--------ccacacatacacacacacacacacacacacacacacacaA--AGACtacaaacatacata-aagact---aca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4196001 53 - 5137665 gt--------ccacacat----------------acacacacacacacaa--aaactacaaacatacata-aagact---aca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122905564 57 - 135778131 gt--------ccacacat--------------acacacacacacacacacataaactacaaacatacata-aagact---aca i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2017691 55 + 2427316 gt--------ccacacat--------------acacacacacacacacaa--agactacaaacatacata-aagact---aca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1312960 53 + 1448899 gt--------cCACATTT----------------acacacacacacacaa--agactacaaacacacata-aagact---aca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53023458 20 - 190850796 GT--------CCACACAT--------------GCACACACAC----------------------------------------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183665 35 - 15139346 GT--------Ccacacat--------------gcacacacac--acacac---------------------aatatt---aca i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6967656 33 - 7304997 GT--------Ccacacat--------------gcacacacac----acac---------------------aatact---gca i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9385383 33 - 11631747 GT--------Ccacacat--------------gcacacacac----acac---------------------aatact---gca i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8619334 14 + 8790067 GT--------ACACACAC----------------------------ACAC--------------------------------- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76420327 14 + 151834684 GT--------TCCCATAC----------------------------ACAC--------------------------------- i mm10.chr5 C 0 C 0 s canFam3.chr13 48007331 50 + 63241923 TC--------Tcacacac--------------acacacacacacacacac-----------aTATATATATAATACTTAAACA i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e dasNov3.JH568349 4096965 62 - 5279953 I a score=909368.000000 s hg38.chr4_KI270787v1_alt 67303 75 + 111943 cacac----------acaTAAACATATATGAAGCAACCTTGTAAAGTCATTCACCCTATTCTTCCCTGGTCAAGT--------CACATGATTT s panTro5.chr4 119631998 75 - 194502333 cacac----------acaTAAACATATATGAAGCAACCTTGTAAAGTCATTCACCCTATTCTTCCCTGGCCAAGT--------CACATGATTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045414 75 - 195804263 cacac----------acaTAAACATATATGAAGCAACCTTGTAAAGTCATTCACCCTATTCTTCCCTGGCCAAGT--------CACATGATTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4476659 75 - 17550833 cacac----------acaTAAACATATATGAAGCAACCTTGTAAAGTCATTCACCCTATTCTTCCCTGGCCAAGT--------CACATGGTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350042 73 - 118206036 cacac----------ac--aAACATATATGAAGCAACCTTGTAAAGTCATTCACCCTATTCTTCCCTGGCCAAGT--------CACACGATTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111558809 75 - 190429646 cacac----------acacacacaTATATGAAGCAACCTTGCAAAATCATTCACCCTATTATTCCCTGGCCAAGT--------CACATGATTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110727997 75 - 189454096 cacac----------acacacacaTATATGAAGCAACCTTGCAAAATCATTCACCCTATTATTCCCTGGCCAAGT--------CACATGATTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13294485 75 + 26754465 cacac----------acacatacatatatGAAGCAACCTTGCAAAATCATTCACCCTATTATTCCCTGGCCAAGT--------CACATGATTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4196054 75 - 5137665 cacac----------acacatacaTATATGAAGCAACCTTGCAAAATCATTCACCCTATTATTCCCTGACCAAGT--------CACATGATTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122905621 75 - 135778131 cacac----------acacacacaTATATGAAGCAACCTTGCAAAATCATTCACCCTATTATTCCCTGGCCAAGT--------CACATGATTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2017746 75 + 2427316 cacac----------acacatacaTATATGAAGCAACCTTGCAAAATCATTCACCCTATTATTCCCTGGCCAAGT--------CACATGATTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1313013 75 + 1448899 cacac----------acacatacaTATATGAAGCAACCTTGCAAAGTCATTCACCCTATTATTCCCTGGCCAAGT--------CACATGATTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53023478 63 - 190850796 -------------------ATACATACATGAAGCAA---TGTAAAGTCATTCACCCTATCCTTCTCTGGCCAAGT--------CACATGATTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183700 75 - 15139346 cacac----------acatatacaTATATGAAGCAACCTTGTAAAGTCATTCACCCTATCCTGCTCTGGCCAAGT--------CATATGATTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6967689 75 - 7304997 cacac----------acacatacaTATATGAAGTAACTTTGTAAAGTCATTCACCCTATTCTTCTCTGGCCAAGT--------CACATGATTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9385416 75 - 11631747 cacac----------acatatacaTATATGAAGCAACCTTGTAAAGTCATTCATCCTATTCTTCTCTGGCCAAGT--------CACATGATTT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8619348 64 + 8790067 ---------------------GCATATATAAAGCAAACGTGTACAGTTATTCACCCAATTTTTCCCTGGCCAAGT--------CACATGAttt i otoGar3.GL873602 C 0 I 277 s mm10.chr5 76420341 40 + 151834684 ----------------------------------AACCTTGCA-----ATCCATTCTACTTTTCTTTGATCGAGC--------TACA------ i mm10.chr5 C 0 C 0 s canFam3.chr13 48007381 85 + 63241923 CACACAGAAAACTATACATACATATTTATGAAGTAAACTTGTAAAGTCATTTGCTCTGCTTCTCCCTGGTCAAAT--------CACATGACTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4097027 83 - 5279953 TACAA----------ACATATACAAATATAAAGCATCTTTGTAAAGGCATTCTCTCTATTTTTCCCTGGTCAAGTGGAAAATACAAATGATTT i dasNov3.JH568349 I 62 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I a score=1125185.000000 s hg38.chr4_KI270787v1_alt 67378 95 + 111943 CAA---------------AAAATCCCATATACCTCCCTTGGAAT-AAAAATTTGCTA-GAAAAATTGTTCATCATTTATTTTGAGAAATA-----A-TTTTAATGGTGGTAATATTTT s panTro5.chr4 119632073 95 - 194502333 CAA---------------AAAATCCCATATACCTCCCTTGGAAT-AAAAATTTGCTA-GAAGAATTGTTCATCATTTATTTTGAGAAATA-----A-TTTTAATGGTGGTAATATTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045489 95 - 195804263 CAA---------------AAAATCCCATATACCTCCCTTGGAAT-AAAAATTTGCTA-GAAGAATTGTTCATCATTTATTTTGAGAAATA-----A-TTTTAATGGTGGTAATATTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4476734 95 - 17550833 CAA---------------AAAATCCCATATACCTCCCTTGGAAT-AAAAATTTGCTA-GAAAAATTGTTCATCATTTATTTTGAGAAATA-----A-TTTTAATGGTGGTAATATTtt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350115 95 - 118206036 CAA---------------AAAATCCCATATACCTCCCTTGGAAT-AAAAATTTGCTA-GAAAAATTGTTCGTCATTTATTCTGAGAAAta-----a-ttttaatggtagtaatatttt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111558884 95 - 190429646 CAA---------------AAAAACCCATATACGTCCCTTGAAAT-AAAAATTTGCTA-GAAAAATTGTTCATCATTTATTTTGTGAAATA-----A-TTTTAATGGTTGTAATATTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110728072 95 - 189454096 CAA---------------AAAAACCCATATACGTCCCTTGAAAT-AAAAATTTGCTA-GAAAAATTGTTCATCATTTATTTTGTGAAATA-----A-TTTTAATGGTTGTAATATTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13294560 95 + 26754465 CAA---------------AAAACCCCATATACGTCCCTTGAAAT-AAAAATTTGCTA-GAAAAATTGTTCATCATTTATTTTGTGAAATA-----A-TTTTAATGGTTGTAATATTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4196129 95 - 5137665 CAA---------------AAAACCCCATATACCTCCCTTGAAAT-AAAAATTTGCTA-GAAAAATTGTTCATCATTTATTTTGTGAAACA-----A-TTTTAATGGTAGTAATATTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122905696 95 - 135778131 CAA---------------AAAACCCCATATACCTCCCTTGAAAT-AAAAATTTGGTA-GAAAAATTGTTCATCATTTATTTTGTGAAATA-----A-TTTTAATGGTAGTAATATTtt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2017821 95 + 2427316 CAA---------------AAAACCCCATATACCTCCCTTGAAAT-AAAAATTTGCTA-GAAAAATTGTTCATCATTTATTTTGTGAAATA-----A-TTTTAATGGTAGTAATATTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1313088 95 + 1448899 CAA---------------AAAACCCCATATACCTCCCTTGGAAT-AAAAATTTGCTA-GAAAAATTGTTCATCATTTATTTTGTGAAATA-----A-TTTTAATGGTAGTAATATTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53023541 95 - 190850796 CAA---------------AAAATTTCATATACCTCCCTTGGTGT-AAAAATTTGCTA-GAAAAATTGTTCATCCTTTATTTTGTGAAATA-----A-TTTTAATGGTTGTAATATTTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183775 94 - 15139346 TGA---------------AAAATGTCATATACCTCCCTTGTTGC--AAAATTTGCTA-GTAAAATTGTTCATTATTTATTTTGTGAAATA-----A-TTTTAATGGTAGtaatatttt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6967764 95 - 7304997 CAA---------------AAAATCTCATATATCTCCCTTGGTGT-AAAAATTTGCTA-GAAAAATTGTTCATCATTTATTTTGTGAAATA-----A-TTTTAATGGTAGTAATATTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9385491 95 - 11631747 CAA---------------AAAATTTCATATACATCCCTTGGTGT-AAAAATTTGCTA-GAAAAATTGTTCATCATTTATTTTGTGAAATA-----A-TTTTAATGGTAGTAATATTTT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8619689 108 + 8790067 cAAATTTGTTTGATTTTTAAAACCCCACACACTAACCCTAGAATAAAAAATTTGCTA-GAAAAATATTTCA----TTATGTTGTGAAATA-----AGTTTCAATGGTAGTAATATTGT i otoGar3.GL873602 I 277 C 0 s mm10.chr5 76420381 75 + 151834684 -----------------------------------CTTTTAAGT-AATAGTC------ATAAAATAGCTGAGAGTTTATTTTATGAAATATATACA-TTTCAATAGCACCAATATTTT i mm10.chr5 C 0 I 242 s canFam3.chr13 48007466 104 + 63241923 -------TATATATATTTTTAATATCGGATACTTCTCCTAGAGT-AAAGGTTCATTT-AAAAGATAGtttattatttatttcattaaata-----aatttCCATGGCAATAATATTTT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4097110 96 - 5279953 ----------------TTAAAATCACATATATCTCCCTTGGAAT-AAAGATTTGCTACAAAAAAGAGTGCACTATTTATTTCATGAAATA-----AATTTCAGTGGCAATAATATTTT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I a score=1128689.000000 s hg38.chr4_KI270787v1_alt 67473 117 + 111943 ACATTAATATTACAAGATTAATAAATATTACTTAATAAAT-TAATTTC-TTCTTACTTAAAAA-----TAAATGCATGATAGTTTCAGGTAGCTTCAATTATTAAAAAATAGATCTTTAAAAAT s panTro5.chr4 119632168 117 - 194502333 ACATTAATATTACAAGattaataaatattacttaataaat-taatttc-ttcttacttaaaaa-----taaatGCATGATAGTTTCAGATAGCTTCAATTATTAAAAAATAGATCTTTAAAAAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045584 113 - 195804263 ACATTAATATTACAAGATTAATAAATATTACTT----AAT-TAATTTC-TTCTTACTTAAAAA-----TAAATGCATGATAGTTTCAGATAGCTTCAATTATTAAAAAATAGATCTTTAAAAAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4476829 114 - 17550833 acattaatattacaatattaataaatattacttaataaat-taat----tttttacttaaaaa-----taaatGCATGATAGTTTCAGGTAGCTTCAATTATTAAAAAATAGATCTTTAAAAAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350210 117 - 118206036 acattaatattacaatattaataaatattGCTTAATAAAT-CAATTTC-TTTTTACTTAAAAA-----TAAATGTATGATCGTTTCAGGTAGCTTCAATTATTAAAAAATACATCTTTAAAAAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111558979 122 - 190429646 ACATTAATATTACAACattaataaatattacttaataaat-taatttc-tttttacttaaaaataaactaaATGCATGATAGTTTCAGGTAGCTTCAATTATTAAAAAATGGATCTTTAAaaat i rheMac8.chr5 C 0 I 312 s macFas5.chr5 110728167 122 - 189454096 ACATTAATATTACAACattaataaatattacttaataaat-taatttc-tttttacttaaaaataaactaaATGCATGATAGTTTCAGGTAGCTTCAATTATTAAAAAATGGATCTTTAAaaat i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13294655 122 + 26754465 ACATTAATATTACAACattaataaatattacttaataaat-taatttc-tttttacttaaaaataaactaaATGCATGATAGTTTCAGGTAGCTTCAATTATTAAAAAATGGATCTTTAAAAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4196224 122 - 5137665 ACATTAATATTACAACattaataaatattacttaataaat-taatttc-tttttacttaaaaataaactaaATGCATGATAGATTCAGGTAGCTTCAATTATTAAAAAATAGATCTTTAAAAAT i cerAty1.NW_012001307v1 C 0 I 312 s chlSab2.chr7 122905791 119 - 135778131 acattaatatt---acattaataaatattacttaataaat-taattTC-TTTTTACTGAAAAATAAACTAAATGCATGATAGTTTCAGGTAGCTTCAATTATTAAAAAATAGATCTTTAAAAAT i chlSab2.chr7 C 0 I 312 s manLeu1.NW_012104388v1 2017916 122 + 2427316 ACATTAATATTACAACattaataaatattacttaataaat-taatttc-tttttacttaaaaataaactaaATGCATGATAGTTTCAGGTAGCTTCAATTATTAAAAAATAGATCTTTAAAAAT i manLeu1.NW_012104388v1 C 0 I 311 s colAng1.NW_012119221v1 1313183 122 + 1448899 ACATTAATATTACAATATTAATAAATATTACTTAATAAAT-TAATTTC-TTTTTACTTAAAAATAAACTAAATGCATGATAGTTTCAAGTAGCTTCAATTATTAAAAAATAGATCTTTAAAACT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53023636 120 - 190850796 ACattaatattacaatat---taaatatcacttaaattaagtaattta-tttttacttaaaaataaaCTAAATGCATGACAGTTTCAGATAGCTTCAATTATTAAAAAACAGATCTTTAAAAAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183869 107 - 15139346 acattaatattacaatat---taaatat-------------taatttc-tttttacttaaaaataaaCTAAATGCATGACAGTTTCAGATAGCTTCAATTATTAAAAAACAGATATTTAACAAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6967859 111 - 7304997 ACATTAATATTACAATAT---TAAATATTACT---------TAATTTC-TTTTTACTTAAAAATAAACTAAATGCATGACAGTTTCAGATAGCTTCAATGATTAAAAAACAGATCTTTAAAAAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9385586 115 - 11631747 ACATTAATATTACAATAT---TAAACATTACTTAAG-----TAATTTC-TTTTTACTTAAAAATAAACTAAATGCATGACAGTTTCAGATAGCTTCAATTATTAAAAAACAGATCTTTAAAAAT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8619797 78 + 8790067 ---------------------TAAATTT-------------TA------TTTTTACTTAAA------CTAAATGCATGATAGTTTCAGGTAGCCTTAATTTTTTAAAAATAGACCTTTTAAAAT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48007570 70 + 63241923 -------------------------------TTAAAGTAT-T--TCTC-TTTTCACTTAAAAA-----TAAATGCCTGATAGTTTCAGGTAGACTTAATTTTTTAAAAAC-------------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4097206 53 - 5279953 -----------------------------------TAAAG-TACTTTTATTTTCACT-----------TAAATGCATGATAGTTTCAATAAGCtttaatt------------------------ i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I a score=35176.000000 s hg38.chr4_KI270787v1_alt 67590 3 + 111943 AAA s panTro5.chr4 119632285 3 - 194502333 AAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045697 3 - 195804263 AAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4476943 3 - 17550833 AAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350327 3 - 118206036 AAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111559413 3 - 190429646 aaa i rheMac8.chr5 I 312 C 0 s macFas5.chr5 110728289 3 - 189454096 aaa i macFas5.chr5 C 0 I 312 s macNem1.NW_012012466v1 13294777 3 + 26754465 AAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4196658 3 - 5137665 AAA i cerAty1.NW_012001307v1 I 312 C 0 s chlSab2.chr7 122906222 3 - 135778131 aaa i chlSab2.chr7 I 312 C 0 s manLeu1.NW_012104388v1 2018349 3 + 2427316 aaa i manLeu1.NW_012104388v1 I 311 C 0 s colAng1.NW_012119221v1 1313305 3 + 1448899 AAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53023756 3 - 190850796 AAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183976 3 - 15139346 AAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6967970 3 - 7304997 AAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9385701 3 - 11631747 AAA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8619875 3 + 8790067 AAA i otoGar3.GL873602 C 0 I 2 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4097259 0 - 5279953 C e canFam3.chr13 48007640 0 + 63241923 C a score=43034.000000 s hg38.chr4_KI270787v1_alt 67593 4 + 111943 TAGG s panTro5.chr4 119632288 4 - 194502333 TAGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045700 4 - 195804263 TAGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4476946 4 - 17550833 TAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350330 4 - 118206036 TAGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111559416 4 - 190429646 taGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110728604 4 - 189454096 taGG i macFas5.chr5 I 312 C 0 s macNem1.NW_012012466v1 13294780 4 + 26754465 TAGg i macNem1.NW_012012466v1 C 0 I 315 s cerAty1.NW_012001307v1 4196661 4 - 5137665 TAGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122906225 4 - 135778131 TAGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2018352 4 + 2427316 TAGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1313308 4 + 1448899 TAGg i colAng1.NW_012119221v1 C 0 I 314 s calJac3.chr3 53023759 4 - 190850796 TAAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183979 4 - 15139346 TAGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6967973 4 - 7304997 TAGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9385704 4 - 11631747 TAGG i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8619880 2 + 8790067 TA-- i otoGar3.GL873602 I 2 C 0 s canFam3.chr13 48007640 4 + 63241923 TAGA i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4097259 0 - 5279953 C a score=21075.000000 s hg38.chr4_KI270787v1_alt 67597 3 + 111943 CTT s panTro5.chr4 119632292 3 - 194502333 CTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045704 3 - 195804263 CTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4476950 3 - 17550833 CTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350334 3 - 118206036 CTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111559420 2 - 190429646 -TT i rheMac8.chr5 C 0 I 1 s macFas5.chr5 110728608 2 - 189454096 -TT i macFas5.chr5 C 0 I 1 s cerAty1.NW_012001307v1 4196665 2 - 5137665 -TT i cerAty1.NW_012001307v1 C 0 I 1 s chlSab2.chr7 122906229 2 - 135778131 -TT i chlSab2.chr7 C 0 I 1 s manLeu1.NW_012104388v1 2018356 2 + 2427316 -TT i manLeu1.NW_012104388v1 C 0 I 1 s calJac3.chr3 53023763 3 - 190850796 CTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183983 3 - 15139346 CTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6967977 3 - 7304997 CTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9385708 3 - 11631747 CTT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8619882 3 + 8790067 CTC i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48007644 3 + 63241923 CCA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4097259 2 - 5279953 -tt i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I e colAng1.NW_012119221v1 1313312 314 + 1448899 I e macNem1.NW_012012466v1 13294784 315 + 26754465 I a score=1234755.000000 s hg38.chr4_KI270787v1_alt 67600 106 + 111943 TTTCCTAATTTCTAAATTGCATAATTT---TCTTATAA--A--GTGGTGACATTAACG---GCCCTTCAAACAAGCTATTCTATTTCCTACGGTGTATTTTTCAAC-----AAG-----T----GATACT s panTro5.chr4 119632295 106 - 194502333 TTTCCTAATTTCTAAATTGCATAATTT---TCTTATAA--A--GTGGTGACATTAATG---GCCCTTCAAACAAGCTATTCTATTTCCTACAGTGTATTTTTCAAC-----AAG-----T----GATACT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045707 106 - 195804263 TTTCCTAATTTCTAAATTGCATAATTT---TCTTATAA--A--GTGGTGACATTAATG---GCCCTTCAAACAAGCTATTCTATTTCCTACAGTGTATTTTTCAAC-----AAG-----T----GATACT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4476953 106 - 17550833 TTTCCTAATTTCTAAATTGCATAATTT---TCTTATAA--A--GTGGTGACATTAATG---GCCCTTCAAACAAGCTATTCTATTTCCTACAGTGTATTTTTCAAC-----AAG-----T----GATACT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350337 106 - 118206036 TTTCATAATTTTTAAATTGCATAATTT---TCTTATAA--A--ATGGTGAGATTAATG---GCCCTTCAAACAAGAGATTCTATTTCCTACAGTGTATTTTTCAAC-----AAG-----T----GATACT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111559423 99 - 190429646 TTTCTTAATTTCTAAATTGCATACTTT---TCTTATAA--A--GTGGTGACATTAATG---GCCCTTCAAACAAGCTATTCTATTTCCTATAGTGTATTTTTCAAC-----AAG---------------- i rheMac8.chr5 I 1 C 0 s macFas5.chr5 110728611 99 - 189454096 TTTCTTAATTTCTAAATTGCATACTTT---TCTTATAA--A--GTGGTGACATTAATG---GCCCTTCAAACAAGCTATTCTATTTCCTATAGTGTATTTTTCAAC-----AAG---------------- i macFas5.chr5 I 1 C 0 s macNem1.NW_012012466v1 13295099 99 + 26754465 TTTCTTAATTTCTAAATTGCATACTTT---TCTTATAA--A--GTGGTGACATTAATG---GCCCTTCAAACAAGCTATTCTATTTCCTATAGAGTATTTTTCAAC-----AAG---------------- i macNem1.NW_012012466v1 I 315 C 0 s cerAty1.NW_012001307v1 4196668 106 - 5137665 TTTCTTAATTTCTAAATTGAATACTTT---TCTTATAA--A--GTGGTGACATTAATG---GCCCTTCAAACAAGCTATTCTATTTCCTATAGTGTATTTTTCAAC-----AAG-----T----GATACT i cerAty1.NW_012001307v1 I 1 C 0 s chlSab2.chr7 122906232 106 - 135778131 TTTCTTAATTTCTAAATTGCATACTTT---TCTTATAA--A--GTGGTGACATTAATG---GCCCTTCAAACAAGCTATTCTATTTCCTATAGTCTATTTTTCAAC-----AAG-----T----GATACT i chlSab2.chr7 I 1 C 0 s manLeu1.NW_012104388v1 2018359 106 + 2427316 TTTCTTAATTTCTAAATTGAATACTTT---TCTTATAA--A--GTGGTGACATTAATG---GCCCTTCAAACAAGCTATTCTATTTCCTATAGTGTATTTTTCAAC-----AAG-----T----GATACT i manLeu1.NW_012104388v1 I 1 C 0 s colAng1.NW_012119221v1 1313626 106 + 1448899 TTTCTTAATTTCTAAATTGCATACTTT---TCTTATAA--A--GTGGTGACATTAATG---GCCCTTCAAACAAACTATTCTGTTTCCTACAGTGTATTTTTCAAC-----AAG-----T----GATACT i colAng1.NW_012119221v1 I 314 C 0 s calJac3.chr3 53023766 106 - 190850796 TTTCTTAATTTCTAAATTGAATAATTT---CTTTATAA--A--GTGGTGACATTAATG---GTCCTTCAAACAAGCTATTCTATTTCCTACAGTGTATTTTTCAAC-----AAG-----T----AATACT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8183986 106 - 15139346 TTTCTTAATTTCTAAATTGAATAATTT---CCTTATAA--A--GTGGTGACATTAATG---GTACTTCAAACAAGCTATTCTATTTCCTACAGTGTATTTTTCAAC-----AAG-----T----AATACT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6967980 106 - 7304997 TTTCTTAATTTCTAAATTGAATAATTT---CCTTATAA--A--GTGGTGACATTAATG---GTCCTTCAAACAAGCTATTCTATTTCCTACACTGTATTTTTCAAC-----AAG-----T----AATACT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9385711 106 - 11631747 TTTCTTAATTTCTATATTGAATAATTT---CCTTATAA--A--GTGGTGACATTAATG---GTCCTTCAAACAAGCTATTCTATTTCCTACAGTGTATTTTTCAAC-----AAG-----T----AATACT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8619885 111 + 8790067 TTTTAAAATTTTTGAATTGCATAGTTA---TCTTACAA--A--CTGGTGACACTAACT---GACCTTCAAACAATCTTTTCTATTTCATACAGTGTATTTCTCAAC-----AAGTTGAAT----AATACT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48007647 118 + 63241923 TTTCTTAATTTTTCAATTATATAATTTTTGTCATATAAGCA--GTGGTGACATTACTAAGTACCCTTCAAACAGGCTGTTCTATTTCATAGATGATATTTTACAAC-----AAG-----CTGCAAATGCT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4097261 103 - 5279953 --------ttt----attatataattt-tatcttataa--aCTGTGATGATACTAACT---TCCTTTCAAGCGAGCTATTCTATTTTATAAGTATTATTTTTTAACACATTAAG-----T----AATGAG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1874110 13 + 4188776 I e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I a score=42688.000000 s hg38.chr4_KI270787v1_alt 67706 5 + 111943 ACATG s panTro5.chr4 119632401 5 - 194502333 ACATG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045813 5 - 195804263 ACATG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4477059 5 - 17550833 ATAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350443 5 - 118206036 ACATG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111559522 2 - 190429646 ---TG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110728710 2 - 189454096 ---TG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13295198 2 + 26754465 ---TG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4196774 5 - 5137665 ACATG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122906338 5 - 135778131 ACATG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2018465 5 + 2427316 ACATG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1313732 5 + 1448899 ACATG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53023872 5 - 190850796 ACATG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8184092 4 - 15139346 A-ATG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6968086 5 - 7304997 ACATG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9385817 5 - 11631747 ACAGG i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1874123 5 + 4188776 ACATA i proCoq1.NW_012140747v1 I 13 C 0 s otoGar3.GL873602 8619996 5 + 8790067 ACATA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48007765 5 + 63241923 ACATA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4097364 5 - 5279953 ACATA i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1786626 663 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I a score=575768.000000 s hg38.chr4_KI270787v1_alt 67711 40 + 111943 AAAAGATACTGGAGTACAAACGTAT---ACAATGATTTTTTA-A s panTro5.chr4 119632406 40 - 194502333 AAAAGATACTGGAGTACAAACATAT---ACAATGATTTTTTA-A i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045818 40 - 195804263 AAAAGATACTGGAGTACAAACATAT---ACAATGATTTTTTA-A i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4477064 40 - 17550833 AAAAGAAACTGGAGTACAAACGTAT---ACAATGATTTTTTA-A i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350448 40 - 118206036 AAAAGATACTGGAGTACAAACATAT---ACAATGATTTTTTA-A i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111559524 41 - 190429646 AAAAGATACTGGAGTACAAACGTAT---AAAATGATTTTTTAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110728712 41 - 189454096 AAAAGATACTGGAGTACAAACGTAT---AAAATGATTTTTTAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13295200 41 + 26754465 AAAAGATACTGGAGTACAAACGTAT---AAAATGATTTTTTAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4196779 41 - 5137665 AAAAGATACTGGAGTACAAACGTAT---AAAATGACTTTTTAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122906343 41 - 135778131 AAAAGATACTGGAGTACAAACGTAT---AAAATGATTTTTTAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2018470 41 + 2427316 AAAAGATACTGGAGTACAAACGTAT---AAAATGATTTTTTACA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1313737 41 + 1448899 AAAAGATACTGGAGTACAAACGTAT---AAAATGATTTTTTAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53023877 40 - 190850796 AAAAGACACTGAAGTAAAAATGTAT---AAAATGATTTTTAA-A i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8184096 40 - 15139346 GAAAGATACTGGAGTAAAAATGTAT---AAAATGATTTTTAA-A i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6968091 40 - 7304997 GAAAGATACTGGAGTAAAAATGTAT---AAAATGATTTTTAA-A i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9385822 43 - 11631747 AAAAGATACTGGAGTAAAACTGTATTTAAAAATGATTTTTAA-A i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1787289 40 + 3286835 AAAAGATATTGGCGTACAAATGTAC---AAAATGAGTTTTTA-A i micMur3.chrUn_NW_017968520v1 I 663 C 0 s proCoq1.NW_012140747v1 1874128 40 + 4188776 AAAAGATATTGGAGTACAAATGTAC---AAAATGATTTTTTA-A i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8620001 40 + 8790067 AAAAGATATTGGAGTACGAATGTAT---AAAATGATTTTTTA-A i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48007770 38 + 63241923 AAAAGATAGTGAAGTTCAAATATAC---AAGATGATTTTT---A i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4097369 40 - 5279953 AAATGGAATGGGAGTGCAAATGTAT---AAAATGATTTTTTA-a i dasNov3.JH568349 C 0 I 1177 e mm10.chr5 76420456 242 + 151834684 I a score=47222.000000 s hg38.chr4_KI270787v1_alt 67751 3 + 111943 AGA s panTro5.chr4 119632446 3 - 194502333 AGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045858 3 - 195804263 AGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4477104 3 - 17550833 AGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350488 3 - 118206036 AGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111559565 3 - 190429646 AGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110728753 3 - 189454096 AGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13295241 3 + 26754465 AGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4196820 3 - 5137665 AGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122906384 3 - 135778131 AGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2018511 3 + 2427316 AGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1313778 3 + 1448899 AGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53023917 3 - 190850796 AGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8184136 3 - 15139346 AGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6968131 3 - 7304997 AGA i cebCap1.NW_016107439v1 C 0 I 1823 s aotNan1.NW_018493494v1 9385865 3 - 11631747 AGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1787329 3 + 3286835 AGG i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1874168 3 + 4188776 AGG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8620041 3 + 8790067 AGG i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48007808 3 + 63241923 AGT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4098586 3 - 5279953 aGG i dasNov3.JH568349 I 1177 C 0 e mm10.chr5 76420456 242 + 151834684 I a score=44234.000000 s hg38.chr4_KI270787v1_alt 67754 8 + 111943 ----CAATAGTC s panTro5.chr4 119632449 8 - 194502333 ----CAATAGTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045861 8 - 195804263 ----CAATAGTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4477107 8 - 17550833 ----CAATAGTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350491 8 - 118206036 ----CAATAGTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111559568 8 - 190429646 ----CAGTAGTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110728756 8 - 189454096 ----CAGTAGTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13295244 8 + 26754465 ----CAGTAGTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4196823 8 - 5137665 ----CAGTAGTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122906387 8 - 135778131 ----CAGTAGTC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2018514 8 + 2427316 ----CAGTAGTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1313781 8 + 1448899 ----CAGTAGTC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53023920 4 - 190850796 ----CAAT---- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8184139 3 - 15139346 ----TGA----- i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9385868 7 - 11631747 ----CGATAGT- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1787332 8 + 3286835 ----CAATAGCC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1874171 8 + 4188776 ----CAATAGCC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8620044 8 + 8790067 ----CAATAATC i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48007811 7 + 63241923 ----CAATAAC- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4098589 8 - 5279953 TGATTGAT---- i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76420456 242 + 151834684 I e cebCap1.NW_016107439v1 6968134 1823 - 7304997 I a score=1023269.000000 s hg38.chr4_KI270787v1_alt 67762 69 + 111943 AG-TTTTACCATATCCCCTAACACCAAT-ATAAAACCAAACTTGTACAGTAAAGGT----AAATACAACAT-AAAA s panTro5.chr4 119632457 69 - 194502333 AG-TTTTACCATATCCCCTAACACCAAT-ATAAAACCAAACTTGTACAGTAAAGGT----AAATACAACAT-AAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045869 69 - 195804263 AG-TTTTACCATATCCCCTAACACCAAT-ATAAAACCAAACTTGTACAGTAAAGGT----AAATACAACAT-AAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4477115 69 - 17550833 AG-TTTTACCATATCCCCTAACACCAAT-ATAAAACCAAACTTGTACAGTAAAGGT----AAATACAACAT-AAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350499 69 - 118206036 AG-TTTTACCATATCCCCTAACACCAAT-ATAAAACCAAATTTGTACAGTAAAGGT----AAATACAACAT-AAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111559576 69 - 190429646 AG-TTTTACCATATCCCCTAACACCAAT-ATAAAACCAAATTTGTACAGTAAAGGT----AAATACAATAT-AAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110728764 69 - 189454096 AG-TTTTACCATATCCCCTAACACCAAT-ATAAAACCAAATTTGTACAGTAAAGGT----AAATACAATAT-AAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13295252 69 + 26754465 AG-TTTTACCATATCCCCTAACACCAAT-ATAAAACCAAATTTGTACAGTAAAGGT----AAATACAATAT-AAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4196831 69 - 5137665 AG-TTTTACCATATCCCCTAACACCAAT-ATAAAACCAAATTTGTACAGTAAAGGT----AAATACAATAT-AAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122906395 69 - 135778131 AG-TTTTACCATATCCCCTAACACCAAT-ATAAAACCAAATTTGTACAGTAAAGGT----AAATACAATAT-AAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2018522 69 + 2427316 AG-TTTTACCATATCCCCTAACACCAAT-ATAAAACCAAATTTGTACAGTAAAGGT----AAATACAATAT-AAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1313789 69 + 1448899 AG-TTTTACCATATCCCCTAACACCAAT-ATAAAACCAAATTTGTACAGTAAAGGT----AAATACAATAT-AAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53023924 69 - 190850796 CG-TTTTACCATATCCCCTAACACCAAT-ATAAAACCGAATTTGAATAGTAAAGGT----AAATAAAACAT-AAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8184142 68 - 15139346 -G-TTTTACCATATCCCCTAACACCAAT-ATAAAACCAAATTTGAATAGTAAAGGT----AAATAAAACAT-AAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6969957 69 - 7304997 AG-TTTTACCATATCCCCTAACACCAAT-ACAAAACCAAATTTGAATAGTAAAGGT----AAATAAAACAT-AAAA i cebCap1.NW_016107439v1 I 1823 C 0 s aotNan1.NW_018493494v1 9385875 66 - 11631747 ----TTTACCATATCCCCTAACACCAAT-ATAAAACCAAATTTGAATAGTAAAGGT----AAAGAAAACAT-AAAG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1787340 70 + 3286835 AG-TCTCACTATATCCCCTAACACCAAT-ATAAAACAAAATTTGTGCACTAAAAGT----AAAGAAAACATGAAAA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1874179 69 + 4188776 AG-TTTCACCATATCCCTTAACACCAAT-ATAAAACAAAATGTGTG-ACTAAAGGT----AAAGAAAACATGAAAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8620052 76 + 8790067 AGTTTTTACCATATGCCCTAACACCAATAAAAAAACCAAAGTTGTGCTCTAAAGGTAAAAAAAAAAAACATGAAAA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48007818 68 + 63241923 AG-GTTTTCCACATCTCCTAACACTAAT-ATAAACCCAAATTTGTGCATAGAAGGT----AAAGA-AATAT-ACTG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4098597 69 - 5279953 AG-TTTTACCACATCCCCTAACAATAAT-ATTAAATGAAATTTTTGCACTGAAGGT----ACAGAAAAAAT-ACAA i dasNov3.JH568349 C 0 I 24 e mm10.chr5 76420456 242 + 151834684 I a score=1215296.000000 s hg38.chr4_KI270787v1_alt 67831 99 + 111943 TAAATGCACTGTATTGCATTAACTGCACGCTGAGATGT---GCATATGTCAGTTAAAGACCAAACTCC------------------AGTGAAAGACC---AAAGCATAATATGTGGAAAAAAA s panTro5.chr4 119632526 99 - 194502333 TAAATGCACTGTATTGCATTAACTGCATGCTGAGATGT---GCATATGTCAGTTAAAGACCATACTCC------------------AGTGAAAGACC---AAAGCATAATATGTGGAAAAAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121045938 99 - 195804263 TAAATGCACTGTATTGCATTAACTGCATGCTGAGATGT---GCATATGTCAGTTAAAGACCAAACTCC------------------AGTGAAAGACC---AAAGCATAATATGTGGAAAAAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4477184 98 - 17550833 TAAATGCACAGTATTGCATTAACTGCACACTGAGATGT---GCATATGTCAGTTAAAGACCCAACTCC-------------------GTGAAAGACC---AAAGCATAATATGTGGAAAAAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350568 99 - 118206036 TAAATGCACTGTATTGCATTAACTGCACACTGAGATGT---GCATATGTCAGTTAAAGACCAAACTCC------------------AGCAAAAGACC---AAAGCATAATATGTGGAAAAAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111559645 116 - 190429646 TAAATGCACTGTATTGCATTAACTGCACACTAAGATGT---GCATATGTCAGTTAAAGACCAAAATCCAGCAAAAGACCAAAATCCAGCAAAAGACC---AAAGCATAATATGTGG-AAAAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110728833 116 - 189454096 TAAATGCACTGTATTGCATTAACTGCACACTAAGATGT---GCATATGTCAGTTAAAGACCAAAATCCAGCAAAAGACCAAAATCCAGCAAAAGACC---AAAGCATAATATGTGG-AAAAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13295321 116 + 26754465 TAAATGCACTGTATTGCATTAACTGCACACTAAGATGT---GCATATGTCAGTTAAAGACCAAAATCCAGCAAAAGACCAAAATCCAGCAAAAGACC---AAAGCATAATATGTGG-AAAAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4196900 117 - 5137665 TAAATGCACTGTATTGCATTAACTGCACACTAAGATGT---CCATACGTCAGTTAAAGACCAAAATCCAGCAAAAGACCAAAATCCAGCAAAAGACC---AAAGCATAATATGTGGAAAAAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122906464 120 - 135778131 TAAATGCATTGTATTGCATTAACTGCACACTAAGATGT---GCATATGTCAGTTAAAGACCAAAATCCAGCAAAAGACCAAAATCCAGCAAAAGACCAAAAAAGCATAATATGTGGGAAAAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2018591 117 + 2427316 TAAATGCACTGTATTGCATTAACTGCACACTAAGATGT---GCATATGTCAGTTAAAGACCAAAATCCAGCAAAAGACCAAAATCCAGCAAAAGACC---AAAGCATAATATGTGGAAAAAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1313858 117 + 1448899 TAAATGCACTGTATTGCATTAACTGCACACTGAGATGT---GCATATGTCAGTTAAAGACCAAAATCCAGCAAAAGACCAAAATCCAGCAAAAGACC---AAAGCATAGTATGTGGAAAAAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53023993 81 - 190850796 TAAATGCACTGTATTGCGTTAACTGCACACCATGATGT---GCATATGGCAGCT------------------------------------AAAGACC---AAAGCGTAATATGTGGAGAAAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8184210 99 - 15139346 TAAATACACTGTATTGTGTTAACTGCACACTGTGATGT---GCCTATGTCAGCTAAAGACCAAACTCC------------------TGCAAAAGACC---AAAGCATAATATGTGGAGAAAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6970026 99 - 7304997 TAAATGCACTGTATTGCATTAACTGCACACTGTGATGT---GCATATGTCAGCTAAAGACCAAACTCC------------------CGCAAAAGACC---AAAGCATACTATGTGGAGAAAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9385941 99 - 11631747 TAAATGCACTGTATTGTGTTAACTGCACACTGTGATGT---GCATATGTCAGCTAAAGACCAAACTCC------------------CGCAAAAGACC---AAAGCATAATATGTGGAGAAAAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1787410 97 + 3286835 TAAATATAC--TATTGCATTTTTTACACCCTGACATAT---GTATATGCCAGTTAAAGACCAAACTTC------------------AGCTAAAGACC---AAATCACAAGATGTAGAGAAAAA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1874248 97 + 4188776 TAAATATGC--TATTACATTTTTTACACCCTGAGATAT---GTATATGCCAGTTAAAGACCAAACTCA------------------AGCTAAAGACC---AAAGCACAAGATGTAGAGAAAAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8620128 97 + 8790067 TAGATACAC--TGTTACATTTTTTACACACTGAAATAT---GTATATGCCAGATAAAGACCAAACTCC------------------AGCTGAAGACT---AAAGCACAAGATGTGGAAAAAAA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48007886 95 + 63241923 TATA-------TATGGTATTTTCTGCATAGTGGGACGTGTAGTATATGCCAGTTAAATACTGAACTCA------------------AGCTAAAGACC---AAAGCACAAGATACAAAGAAAAA i canFam3.chr13 C 0 I 200 e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098666 24 - 5279953 I a score=152018.000000 s hg38.chr4_KI270787v1_alt 67930 10 + 111943 GAAAAGATAC s panTro5.chr4 119632625 10 - 194502333 GAAAAGATAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121046037 10 - 195804263 GAAAAGATAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4477282 10 - 17550833 GAAACGATAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350667 10 - 118206036 GAAAAGATAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111559761 10 - 190429646 GAAAAGATAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110728949 10 - 189454096 GAAAAGATAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13295437 10 + 26754465 GAAAAGATAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4197017 10 - 5137665 GAAAAGATAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122906584 10 - 135778131 GAAAAGATAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2018708 10 + 2427316 GAAAAGATAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1313975 10 + 1448899 GAAAAGATAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53024074 10 - 190850796 GAAAAGATAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8184309 10 - 15139346 GGAAAGATAC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6970125 10 - 7304997 GAAAAGATAC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9386040 10 - 11631747 GAAAAGATAC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1787507 10 + 3286835 GAAAACATAC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1874345 10 + 4188776 GAAAAGATAC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8620225 10 + 8790067 CAAAAGATAC i otoGar3.GL873602 C 0 I 1867 s canFam3.chr13 48008181 10 + 63241923 aaaaaaTTAT i canFam3.chr13 I 200 C 0 e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098666 24 - 5279953 I a score=215739.000000 s hg38.chr4_KI270787v1_alt 67940 15 + 111943 AACAATGGGTTAAAA s panTro5.chr4 119632635 15 - 194502333 AACAATGGGTTAAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121046047 15 - 195804263 AACAATGGGTTAAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4477292 15 - 17550833 AACAATGGGTTAAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350677 14 - 118206036 AACAATGGGTT-AAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111559771 15 - 190429646 AACAATGGGTTAAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110728959 15 - 189454096 AACAATGGGTTAAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13295447 15 + 26754465 AACAATGGGTTAAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4197027 15 - 5137665 AACAATGGGTTAAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122906594 15 - 135778131 AACAATGGGTTAAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2018718 15 + 2427316 AACAATGGGTTAAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1313985 15 + 1448899 AGCAATGGGTTAAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53024084 15 - 190850796 AACAATGGGTTAAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8184319 15 - 15139346 AACAATGGGTTAAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6970135 15 - 7304997 AACAATGGGTTAAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9386050 15 - 11631747 AACAATGGGTTAAAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1787517 15 + 3286835 AACAATGGGTTAAAA i micMur3.chrUn_NW_017968520v1 C 0 I 620 s proCoq1.NW_012140747v1 1874355 15 + 4188776 AACGATGGGTTAAAA i proCoq1.NW_012140747v1 C 0 C 0 s canFam3.chr13 48008191 15 + 63241923 AACAAAGAGTAAAAA i canFam3.chr13 C 0 C 0 e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098666 24 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=3237101.000000 s hg38.chr4_KI270787v1_alt 67955 291 + 111943 GGGCAGTTTTCTCCTCTGTTCAAACAGAAACCAAGGA-TGTTTTTTCCTTGCGTTTTCCT---TGTTTCAACTCTAGTTA-TTGACATTAGCATTTACATTTTACAACAGAACATTAATTTCCAAAAACATCCTAAGACTTCCGGGGCTTAGGTGtgtatcagtcaggataggctaggttaccctgcagtatcgaacaacctgaaaagtctcagcagcttaaaacaatacttatttctccc-caggtgcacatctattatgggtcagcaatgagctttgcttgctcatggaaatcac s panTro5.chr4 119632650 291 - 194502333 GGGCAGTTTTCTCCTCTGTTCAAACAGAAACCAAGGA-TTTTTTTTCCTTGCGTTTTCCT---TGTTTCAACTCTAGTTA-TTGACATTAGCATTTACATTTTACAACAGAACATTAATTTCCAAAAACATCCTAAGACTTCCGGGGCTTAGGTGtgtatcagtcgggataggctaggttaccctgcagtatcgaacaacctgaaaagtctcagcagcttaaaacaatacttatttctccc-caggtgcacatctattatgggtcagcaatgagctttgcttgctcatgggaatcac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121046062 291 - 195804263 GGGCAGTTTTCTCCTCTGTTCAAACAGAAATCAAGGA-TTTTTTTTCCTTGCGTTTTCCT---TGTTTCAACTCTAGTTA-TTGACATTAGCATTTACATTTTACAACAGAACATTAATTTCCAAAAACATCCTAAGACTTCCGGGGCTTAGGTGtgtatcagtcgggataggctaggttaccctgcagtatcgaacaacctgaaaagtctcagcagcttaaaacaatacttatttctccc-caggtgcacatctattatgggtcagcaatgagctttgcttgctcatgggaatcac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4477307 292 - 17550833 GGGCAGTTTTCTCCTCTGTTCAAACAGAAACCAAGGATTTTTTTTTCCTTGCATTTTCCT---TGTTTCAACTCTAGTTA-TTGACATTAGCATTTACATTTTACAACTGAACATTAATTTCCAAAAACATCCTAAGACTTCCAGGGCTTAGGTGtgtatcagtcgggataggctaggttaccctgcagtatcgaacaacccgaaaagtctcagcagcttaaaacaatacttatttctccc-caggtgcacatctattatgggtcagcaatgagctttgcttgctcatggaaatcac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350691 291 - 118206036 GGGCAGTTTTCTCCTCTGTTCAAACAGAAACCAAGGA-TTTTTTTTCCTTGCATTTTCCT---TGTTTCAACCCTAGTTA-TTGATATTAGCATTTACATTTTACAACTGAACATTAATTTCCAAAAACATCCTAAGACTTCCGGGGCTTAGCTGtgtatcagtcgggataggctaggttactctgcagtatcgaacaacctgaaaagtctcagcagcttaaaacaacacttatttctccc-caggtgcacatctattacgggtcagcaatgagctttgcttgctcatggaagtcac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111559786 290 - 190429646 AGGCAATTTTCTCCTCTATTGAAACAGAAACCAAGGA--TTTTTTTCCTTGCGTTTTCCT---TGTTTCAACCCTGGTTA-TTGACATTAGCATTTACATTTTGCAACTGAACATTAATTTCCAAAAACATCCTTAGACTTCCGGGGCTTAGCTGtgtatcaggcgggataggctaggttactctgcagtatcaaacaacccgaaaagtctcagcagcttaaaacaacacttatttcttcc-caggtgcacatctgtcatgggtcagcaatgagctttgcttgctcatggaagtcac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110728974 291 - 189454096 AGGCAATTTTCTCCTCTATTGAAACAGAAACCAAGGA-TTTTTTTTCCTTGCGTTTTCCT---TGTTTCAACCCTGGTTA-TTGACATTAGCATTTACATTTTGCAACTGAACATTAATTTCCAAAAACATCCTTAGACTTCCGGGGCTTAGCTGtgtatcaggcgggataggctaggttactctgcagtatcaaacaacctgaaaagtctcagcagcttaaaacaacacttatttctccc-caggtgcacatctgtcatgggtcagcaatgagctttgcttgctcatggaagtcac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13295462 291 + 26754465 AGGCAATTTTCTCCTCTATTGAAACAGAAACCAAGGA-TTTTTTTTCCTTGCGTTTTCCT---TGTTTCAACCCTGGTTA-TTGACATTAGCATTTACATTTTGCAACTGAACATTAATTTCCAAAAACATCCTTAGACTTCCGGGGCTTAGCTGtgtatcaggcgggataggctaggttactctgcagtatcaaacaacctgaaaagtctcagcagcttaaaacaacacttatttctccc-caggtgcacatctgtcatgggtcagcaatgagctttgcttgctcatggaagtcac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4197042 291 - 5137665 AGGCAATTTTCTCCTCTATTCAAACAGAAACCAAGGA-TTTTTTTTCCTTGCGTTTTCCT---TGTTTCAACCCTGGTTA-TTGACATTAGCATTTACATTTTGCAACTGAACATTAATTTCCAAAAACATCCTTAGACTTCCGGGGCTTAGCTGtgtatcaggcgggataggctaggttactctgcagtatcgaacaacctgaaaagtctcagcagcttaaaacaacacttatttctccc-caggtgcacatctgtcatgggtcagcaatgagctttgcttgctcatggaagtcac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122906609 291 - 135778131 AGGCAATTTTCTCCTCTATTGAAACAGAAACCAAGGA-TTTTTTTTCCTTGCGTTTTCCT---TGTTTCAACCCTGGTTA-TTGACATTAGCATTTACATTTTGCAACTGAACATTAATTTCCAAAAACATCCTTAGACTTCCAGGGCTTAGCTGtgtaccaggcgggataggctaggttactctgcagtatcgaacaacctgaaaagtctcagcagcttaaaacaacacttgtttctccc-caggtgcacatctgtcatgggtcagcaatgagctttgcttgctcatggaagtcac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2018733 291 + 2427316 AGGCAATTTTCTCCTCTATTGAAACAGAAACCAAGGA-TTTTTTTTCCTTGCGTTTTCCT---TGTTTCAACCCTGGTTA-TTGACATTAGCATTTACATTTTGCAACTGAACATTAATTTCCAAAAACATCCTTAGACTTCCGGGGCTTAGCTGtgtatcaggcgggataggctaggttactctgcagtatcaaacaacctgaaaagtctcagcagcttaaaacaacacttatttctccc-caggtgcacacctgtcatgggtcagcaatgagctttgcttgctcatggaagtcac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1314000 291 + 1448899 AGGCAGTTTTCTCCTCTGTTCAAACAGAAACGAAGGA-TTTTTTTTCCTTGCGTTTTCCT---TGTTTCAACCCTGGTTA-TTGACATTAGTATTTACATTTTGCAACTGAACATTAATTTCCAAAAACATCCTAAGACTTCCGGGGCTTAGCTGtgtatcaggcgggataggctaggttactctgcagtatcgaacaacctgaaaagtctcagcagcttaaaacaacacttatttctccc-caggtgcacatctgtcatgggtcagcaatgagctttgcttactcatggaagtcac i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53024099 287 - 190850796 AGTCA-GTTTCTCCTCTGTTCAAACAGAAACCAAGGA-TTTTTTTTCCTTACTTTTTCCT---TGTTTCAACTCTGGTTG-TTGACATTAGCATTTATATTTTACGAG-GAACATGAATTTCCAAAAGCATCCTAAGACTT-CAGGGCTTAGCTGtgcgtcagtcaggatca--ttcgatactctgcagtattgaacaacctgaaaagtctcagcagcttaaaacaacacttctttctccctcatgtgcacatctaccatggggtaccaatgagctctgcttgctcatggatgtcac i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8184334 288 - 15139346 AGGTACTTTTCTCCTCTGTCCAAACAGAAACCAAGGA--TTTTTTTCCTTGCTTTTTCCT---TTTTTCAACTCTGGTTG-TTGACATGAGCATTTATATTTTACAAGTGGACATTAATTTCCAAAAGTATCCTAAGACTT-CGGGGCTTAGCTGtgcatcagtcaggatca--ttccatactctgcagtattgaacaagctgaaaagtctcagcagcttaaaacaacacttatttctccctcatgtgcacatctaccataggtcaccaatgagctttgctcgctcatggaagtcac i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6970150 288 - 7304997 AGGCAATTTTCTCCTCTGTTCAAACAGAAACCAAGGA--TTTTTTTCCTTGATTTTTCCT---TGTTTCAACTCTGGTTG-TTGACATTAGCATTTACATTTTACAAGTGAACATTAATTTCCAAAAGCATCCTAAGACTT-CAGGGCTTAGCTGtgcatcagtcaggatca--ttcgatactctgcagtattgaacaagctgaaaagtctcagcagcctaaaacaacacttatttctccctcatgtgcacatctaccataggtcaccaatgagctttgcttactcattaaagtcac i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9386065 288 - 11631747 AGGCAGTTTTCTCCTCTGTTCAAACAGAAACCAAGGA--TTTTTTTCCTTGCTTTTTCCT---TGTTTCAACTCTGGTTG-TTGACACTAGCATTTACATTTTACAAGTGAACATTAATTTCCAAAAGCATCGTAAGACTT-CAGGGCTTAGCTGtgcatcagtcaggatca--ttcgatattctgcagtattgaaccacctgaaaagtctcagcagcttaaaacaacacttatttctctctcatgtgcacatctaccataggtcaccaatgagctttgcttgctcatggaagtcac i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1874370 292 + 4188776 AGGCATCTTTTTCTTCTGTTCGAACAGATACCAAGGA----TTTTGCCTTGCTTTTTTCTAAGTGTTTCAATCCCAGTTACTTGATAGTAGCATTTACATTTCATAACTAGGCATTAATTTCCAAAATCATCCTAAGACTTATATGGTTTAGCCGtgtatcagtggggataggctaggttatcctgcagtatcaaacaacctgaaaagtccgagtggcttgaaccaacgtttatttctccctcgtgtgcatatcca-cacgggtcagcagtgagctttgcttgctcatggaagtcac i proCoq1.NW_012140747v1 C 0 I 539 s canFam3.chr13 48008206 279 + 63241923 -GGAGTCTTTCTCTTCAGCTCAAACTGAAACCAACAA---GTTTTCCTTGGCTTTTTCCTAAGTGTTTCAATCTTGGTTA-TAAATAGTAGCATTTACATTT-----CCAGTAGCTCATTTCCAGAAACACCCTAACACCT-CATGGTTTAGCTACAtatcatttgggcaaggtgaggctattctgcagtatcaaacaacccgagaactctcagcagtttaaaacaatgtttattcctcactc--gtgcatatcc----tgcatcagcagtgggctttgcctgctcttgcaa-tcac i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1787532 620 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098666 24 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=1140948.000000 s hg38.chr4_KI270787v1_alt 68246 107 + 111943 caggaaattcaagc---cagaggctccatcctgacaaacccagaggcag-------aacataactaac-----cacgcgggggctcttcaagcttctgcccagaaatgacacacatcatttc s panTro5.chr4 119632941 107 - 194502333 caggaaattcaagc---cagaggctccatcctgacaaacccagaggcag-------aacataactaac-----cacgcgggggctcttcaagcttctgcccagaaatgacacacatcatttc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121046353 107 - 195804263 caggaaattcaagc---cagaggctccatcctgacaaacccagaggcag-------aacataactaac-----cacgcgggggctcttcaagcttctgcccagaaatgacacacatcatttc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4477599 106 - 17550833 caggaaattcaagc---cggaggctccatcctgacaaacccagaggcag-------aacataactaac-----cacgc-ggggctcttcaagcttctgcccagaaatgacacacatcatttc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69350982 107 - 118206036 caggaaactcaagc---cagaggcttcatcttgacaaacctagaggcag-------aacataactaac-----cacgtggggactcttcaagcttctgcccagaaatgacacacatcatttc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111560076 107 - 190429646 caggaaactcaagc---cagaggctccatcctgacaaacccagaggcag-------aacataactaac-----cacactctggctcttcaagcttctgcccagaaatgacacacatcacttc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110729265 107 - 189454096 caggaaactcaagc---cagaggctccatcctgacaaacccagaggcag-------aacataactaac-----cacactctggctcttcaagcttctgcccagaaatgacacccatcacttc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13295753 107 + 26754465 caggaaactcaagc---cagaggctccatcctgacaaacccagaggcag-------aacataactaac-----cacactctggctcttcaagcttctgcccagaaatgacacacatcactta i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4197333 107 - 5137665 caggaaactcaagc---cagaggctccatcctgacaaacccagaggcag-------aacataactaac-----cacactctggctcttcaagcttctgcccagaaatgacacacatcacttc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122906900 107 - 135778131 caggaaactcaagc---cagaggctccatcctgacaaacccagaggcag-------aacataactaac-----cacactctggctcttcaagcttctgccccgaaatgacacacatcacttc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2019024 107 + 2427316 caggaaactcaagc---cagaggctccatcctgacaaacccagaggcag-------aacataactaac-----cacactctggctcttcaagcttctgcccagaaatgacacacatcacttc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1314291 112 + 1448899 caggaaactcaagc---cagaggctccatcctgacaaactcagaggcag-------aacataactaactacattacactctggctcttcaagtttctgcccagaaatgacaaacatcacttc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53024386 110 - 190850796 caggaacctcaagctgacagaggctccatcctaacaaacccaaaggcag-------aacatagctaac-----cacatgctggctcttcaagcttctgcccggaaatgacacataccacttt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8184622 110 - 15139346 caggaaacttaagctgacagaggctccatcctaaccaacccagaggcag-------aacgtagctaac-----cgcatgctggctcttcaagcttctgcccagaaatgacacatatcacttc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6970438 110 - 7304997 caggaaactcaagctgacagaggctccatcctaacaaacccagaggcag-------aacatagctaac-----cacatgctggctcttcaagcttctgcccagaaatgacacatatcacttc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9386353 110 - 11631747 caggaaactcaagctgacagaggctccatcctaacaaacccagaggcag-------aacatagttaac-----cacatggtggctcttcaagcttctgcccagaaatgacacatatcacttc i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48008485 116 + 63241923 -tgggaacctaagctgacagaggctgcatcccaacaaaggcagaggagggaaagacaatgtggagaac-----cacgtgctggctcttaaagcttttgcccagaaatgacatacatcacttc i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1874662 539 + 4188776 I e micMur3.chrUn_NW_017968520v1 1787532 620 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098666 24 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=1159933.000000 s hg38.chr4_KI270787v1_alt 68353 127 + 111943 cactcatatGGGGTTTTGTATTTTTTGTTTTGTTCTTAAATTTTC----ATTTATTTTAATAGACAAAACATGTTTTGAAATATGTATGTATTTTTGAAATATGTATGCATTTAGAATTGTGAAATGGCCc s panTro5.chr4 119633048 127 - 194502333 cactcatatGGGGTTTTGTATTTTTTGTTTTGTTCTTAAATTTTC----ATTTATTTTAATAGACAAAACATGTTTTGAAATATGTATGTATTTTTGAAATATGTATGCATTTAGAATTGTGAAATGGCCc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121046460 127 - 195804263 cactcatatGGGGTTTTGTATTTTTTGTTTTGTTCTTAAATTTTC----ATTTATTTTAATAGACAAAACATGTTTTGAAATATGTATGTATTTTTGAAATATGTATGCATTTAGAATTGTGAAATGGCCc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4477705 127 - 17550833 cactcatatGGGGTTTTGTATTTTTTGTTTTGTTCTTAAATTTTC----ATTTATTTTAATAGACAAAACATGTTTTGAAATATGTATGTATTTTTGAAATATGTATGCATTTAGAATTGTGAAATGGCCc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69351089 131 - 118206036 cactcacatGGGGTTttgtattttttgttttgttcttaaattttcatttatttattttaATAGACAAAACATGTTTTGAAATATGTATGCATTTTTGAAATACGTATGCATTTAGAATTGTGAAATGGCCc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111560183 130 - 190429646 cactcacatGGGGTTTTGTAGTTtttgttttgttcttaaatttttatttatttatttTAATAGAC-AAACATGTTTTGAAATATGTATGCATTTTTGAAATGTGTACGCATTTAGAATTGTGAAATGGCCc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110729372 130 - 189454096 cactcacatGGGGTTttgtattttttgttttgttcttaaatttttatttatttattttaATAGAC-AAACATGTTTTGAAATATGTATGCATTTTTGAAATGTGTACGCATTTAGAATTGTGAAATGGCCc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13295860 130 + 26754465 cactcacatGGGGTTTTGtattttttgttttgttcttaaatttttatttatttatttTAATAGAC-AAACATGTTTTGAAATATGTATGCATTTTTGAAATGTGTACGCATTTAGAATTGTGAAATGGCCc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4197440 130 - 5137665 cactcacatGGGGTTttgtattttttgttttgttcttaaatttttatttatttattttaATAGAC-AAACATGTTTTGAAATATGTATGCATTTTTGAAATGTGTACGCATTTAGAATTGTGAAATGGCCc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122907007 130 - 135778131 cactcacatGGGGTTttgtattttttgttttgttcttaaatttttatttatttattttaATAGAC-AAACATGTTTTGAAATCTATATGCATTTTTGAAATGTGTACGCATTTAGAATTGTGAAATGGCCc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2019131 130 + 2427316 cactcacatGGGGTTTTGtattttttgttttgttcttaaatttttatttatttatttTAATAGAC-AAACATGTTTTGAAATATGTATGCATTTTTGAAACGTGTACGCATTTAGAATTGTGAAATGGCCc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1314403 130 + 1448899 cactcacatGGGGTTTTGtattttttgttttgttcttaaatttgtatttatttatttTAATAGAC-AAACATGTTTTGAAATATGTATGCATTTTTGAAATGTGTACGCATTTAGAATTGTGAAATGGCCc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53024496 112 - 190850796 cactcacatGGGGTTTTATATTTTTTGTTTTGTTCTTAAATTTCCATTTATTTTTTTTAATTGACAAAACATGTTTTAAAATATGTAT-------------------GCATTTAGAATTGTGAAATGGCCC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8184732 112 - 15139346 cactcacatGGGGTTTTACATTTTTTGTTTTGTTCTTAAATTTCCATTTATTTATTTTAATTGACAAAACATGTTCTAAAATATGTAT-------------------GCATTTAGAATTGTGAAATGGCCc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6970548 112 - 7304997 cattcacatGGGGTTTTATATTTTTTGTTTTGTTCTTAAATTTCCATTTATTTATTTTAATTGACAAAACATGTTTTAAAATATGTAT-------------------GCATTTAGAATTGTGAAATGGCCc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9386463 112 - 11631747 cactcacatGGGGTTTTATATGTTTTGTTTTGTTCTTAAATTTGCATTAATTTATTTTAATTGACAAAACATGTTTTAAAATATGTAT-------------------GCATTTAGAATTGTGAAATGGCCC i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1874662 539 + 4188776 I e micMur3.chrUn_NW_017968520v1 1787532 620 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098666 24 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I e canFam3.chr13 48008601 0 + 63241923 C a score=737836.000000 s hg38.chr4_KI270787v1_alt 68480 75 + 111943 tgcttacatatcactggccaaaacaagtcacattaccaggcctgccatcaacgagggggcggATGAATAACTCTT s panTro5.chr4 119633175 75 - 194502333 tgcttacatatcactggccaaaacaagtcacattaccaggcctgccatcaacaagggggcggATGAATAACTCTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121046587 75 - 195804263 tgcttacatatcactggccaaaacaagtcacattaccaggcctgccatcaacaagggggcggATGAATAACTCTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4477832 75 - 17550833 tgcttacatatcactggccaaaacaagtcacattaccaggcctgccatcaacaagggggTGGATGAATAACTCTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69351220 75 - 118206036 tgcttacatatcattggccaaaacaactcacattaccaggcctgccatcaacaagggggcagATGAACAACTCTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111560313 75 - 190429646 tgcttatgtatcattggccaaaacaagtcacatgaccatgcctgccatcaacaagggggcggATGAACAGCTCTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110729502 75 - 189454096 tgcttatgtatcattggccaaaacaagtcacatgaccatgcctgccatcaacaagggggcggATGAACAGCTCTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13295990 75 + 26754465 tgcttacgtatcattggccaaaacaagtcacatgaccatgcctgccatcaacaagggggcagATGAACAGCTCTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4197570 75 - 5137665 tgcttacgtatcattggccaaaacaagtcacatgaccatgcctgccatcaacaagggggcggATGAACAGCTCTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122907137 74 - 135778131 tgtttatgtatcattggccaaaacaagtcacatgaccatgcctgccatcaacaa-ggggcggATGAACAGCTCTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2019261 75 + 2427316 tgcttacgtatcattggccaaaacaagtcacatgaccatgcctgccatcaacaagggggcggATGAACAGCCCTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1314533 75 + 1448899 tgcttacatatcattggccaaaacaagtcacatgaccatgcccgccgtcaacaagggggcggATGAACAACTCTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53024608 75 - 190850796 TGCTTACATATCATGGGCCAAAACAAGGCAAATGACCATGCCTGCCATCCACAGCAGGGCAGATGAAAAACTTTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8184844 75 - 15139346 tgcttacatatcatgggctaaaacaagtcacatgaccatgcctGCCACCCACAGTGGGGAAGATGAAATACTTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6970660 75 - 7304997 tgcttacatatcatgggccaaaacaagtcacatgaccatgcctgccatccacagcggggcagatgaaatgcTTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9386575 75 - 11631747 TCcttatatatcatgggccaaaacaagtcacatgaccatgcctGCCGCCCACAGCGGGGCAGATGAACAACTTTT i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48008601 73 + 63241923 tgctcacaggcaattggctaaagcaaatcacaggaccaagccag-tatcaacagggtag-ggaTAAACAGTTCTT i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1874662 539 + 4188776 I e micMur3.chrUn_NW_017968520v1 1787532 620 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098666 24 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=2256814.000000 s hg38.chr4_KI270787v1_alt 68555 198 + 111943 CCCCAGGGAGAGTTACCGAAGGTTTATAAGTGATAGAGTCTTCCACAAGCTTTAGGATTAccttacagctgggactatagtttaccaaataggctcatccacatcatctcactggatcttgataaca--tcc-atatgatgccaagggcaggAAGGGTGCGGGCCGGTAGCAACAGCAG-GCACTGCAGAATATTTAAGCAG s panTro5.chr4 119633250 198 - 194502333 CCCCAGGGAGAGTTACCGAAGGTTTATAAGTGATAGAGTCTTCCACAAGCTTTAGGATTAccttacagctgggactatagtttaccaaataggctcatccacatcatctcactggatcttgataaca--tcc-atatgatgccaagggcaggAAGGGTGCGGGCCGGTAGCAACAGCAG-GCACTGCAGAATATTTAAGCAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121046662 198 - 195804263 CCCCAGGGAGAGTTACCGAAGGTTTATAAGTGATAGAGTCTTCCACAAGCTTTAGGATTAccttacagctgggactatagtttaccaaataggctcatccacatcatctcactggatcttgataaca--tcc-atatgatgccaagggcaggAAGGGTGCGGGCCGGTAGCAACAGCAG-GCACTGCAGAATATTTAAGCAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4477907 197 - 17550833 CCCCAGGGAGAGTTACCGAAGGTTTATAAGTGATAGAGTCTTCCACAAGCTTTAGGATTACCTTGCAGCTGGGACtatagtttaccaaataggctcatccacatcttctcactggatcttgataaca--tcc-atatgatgccaagggcaggAAGGGTGCGGG-TGGTAGCAACAGCAG-GCACTGCAGAATATTTAAGCAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69351295 198 - 118206036 CCCCAGGGAGAGGTACCGAAGGTTTATAAGTGATAGAGTCTTCCACAAGCTTTAAGATTAccttacagctgggactatagtttaccaaataggctcatccgcatcatgtcactggatcttgataaca--tcc-atatgatgccaagggcaggAAGGGTGTGGGCCGGTAGCAACAGCAG-GCACTGCAGAATATTTAAGCAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111560388 197 - 190429646 CCCC-GGGAGAGGTACTGAAGGTTTATAAGTGATAGAGTCTTCCACAAGCTTTAAGATTAccttacagctgggactacagtttaccaaataggctcatccacatcatctcactggatcttgataaca--tcc-atgtgatgccaagggcaggAAGGGTGCGGGTCGGTAGCAACAGCAG-GCGCTGCAGAATATTTAAGCAG i rheMac8.chr5 C 0 I 4 s macFas5.chr5 110729577 197 - 189454096 CCCC-GGGAGAGGTACTGAAGGTTTATAAGTGATAGAGTCTTCCACAAGCTTTAAGATTACCTTACAGCTGGGACtacagtttaccaaataggctcatccacatcatctcactggatcttgataaca--tcc-atgtgatgccaagggcaggAAGGGTGCGGGTCGGTAGCAACAGCAG-GCGCTGCAGAATATTTAAGCAG i macFas5.chr5 C 0 I 4 s macNem1.NW_012012466v1 13296065 197 + 26754465 CCCC-CGGAGAGGTACTGAAGGTTTATAAGTGATAGAGTCTTCCACAAGCTTTAAGATTAccttacagctgggactacagtttaccaaataggctcatccacatcatctcactggatcttgataaca--tcc-atgtgatgccaagggcaggAAGGGTGCGGGTCGGTAGCAACAGCAG-GCGCTGCAGAATATTTAAGCAG i macNem1.NW_012012466v1 C 0 I 4 s cerAty1.NW_012001307v1 4197645 197 - 5137665 CCCC-GGGAGAGGTACTGAAGGTTTATAAGTGATAGAGTCTTCCACAAGCTTTAAGATTAccttacagctgggactacagtttaccaaataggctcatccacatcatctcactggatcttgataaca--tcc-atgtgatgccaagggcaggAAGGGTGCGGGTCGGTAGCAACAGCAG-GTGCTGCAGAATATTTAAGCAG i cerAty1.NW_012001307v1 C 0 I 4 s chlSab2.chr7 122907211 197 - 135778131 CCCC-GGGAGAGGTACTGAAGGTTTATAAGTGATAGAGTCTTCCACAAGCTTTAAGATTACCTTACAGCTGGGACtacagtttaccaaataggctcatccacatcatctcactggatcttgataaca--tcc-atgtgatgccaagggcaggAAGGGTGCGGGTCGGTAGCAACAGCAG-GCGCTGCAGAATATTTAAGCAG i chlSab2.chr7 C 0 I 4 s manLeu1.NW_012104388v1 2019336 197 + 2427316 CCCC-GGGAGAGGTACTGAAGGTTTATAAGTGATAGAGTCTTCCACAAGCTTTAAGATTAccttacagctgggactacagtttatcaaataggctcatccacatcatctcactggatcttgataaca--tcc-atgtgatgccaagggcaggAAGGGTGCGGGTCGGTAGCAACAGCAG-GCGCTGCAGAATATTTAAGCAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1314608 197 + 1448899 CCCC-GGGAGAGGTACTGCAGGTTTATAAGTGATAGAGTCTTCCACAAGCTTTAAGATTAccttacagctgggactacagtttaccaaataggctcatccacatcatctcactggatcttgataaca--tcc-atgtgataccaagggcaggAAGGGTGCGGGTCGGTAGCAACAGCAG-GCGCTGCAGAATATTTAAGCAG i colAng1.NW_012119221v1 C 0 I 4 s calJac3.chr3 53024683 198 - 190850796 CCCCAGGGAGAGGTACTGACGGTTAATAAGTGATAGAGTCTTCCACAAGTTTTAAGATTACCTTACAGCTGAAACtatagtttaccaaataggctcatccacatcatctctctggctcctgataata--tcc-atgtgatgctaggggcaggAAGGGTGCGGGCAGGTAGCAACAGTGG-GTGCCACAGAATATTTAAGCAG i calJac3.chr3 C 0 I 4 s saiBol1.JH378162 8184919 198 - 15139346 CCCCAGGGAGAGGTACTGAAGGTTAATAAGTGATAGAGTCTTCCACAAGTTTTAAGATTACCTTACAGCTGAAACtatagtttaccaaataggctcatccacatcatctcactggctcctgataaca--tcc-atgtgatgctaggggcaggAAGGGTGCGGGCAGGTAGCAACAGTGG-ACACCACGAAATATTTAAGCAG i saiBol1.JH378162 C 0 I 4 s cebCap1.NW_016107439v1 6970735 198 - 7304997 CCCCAGGGAGAGGTACTGAAGGTTAATAAGTGATAGAGTCTTCCACAAGTTTTAAGATTAccttacagctgatactatagtttaccaaataggctcatccatatcatctcactggctcctgataaca--tcc-acgtgatgctaggggcaggAAGGGTGTGGGCAGGTAGCAACAGTTG-GTGCCAAAGAATATTTAAGCAG i cebCap1.NW_016107439v1 C 0 I 4 s aotNan1.NW_018493494v1 9386650 198 - 11631747 CCCCAGGGAGAGGTACTGAAGGTTAACAAGTGACAGAGTCTTCCACAAGTTTTAAGATTACCTTACAGCTGAAACtatagtttaccaaataggctcatccacatcatctcactggctcctgataaca--tcc-atgtgatgctaggggcaggaagggtaCGGGCAGGTAGCAACAGTGG-GCGCCACAGAATATTTAAGCAG i aotNan1.NW_018493494v1 C 0 I 4 s micMur3.chrUn_NW_017968520v1 1788152 198 + 3286835 CCCCAGGAAGAGGTACTGAATGTTGATAAGTGAT--AATCTTCCACAAGCCTTAAAATTACCTTACGCCTAGGACTGTAGTTTACTAAATAGGCTCATGTGCACATTCTGATTAGATCTTGATAACA--CCCGGGGTGATGCCACATGCAGGAAGGGTGGTGGTGGGCAGCAACAGCTGAGCAATGGGGAATATTTAAGTAG i micMur3.chrUn_NW_017968520v1 I 620 I 4 s canFam3.chr13 48008674 187 + 63241923 CCCCCAAGAGATAGACTGAATGTTTATAAGTAATACAGTTTGCCACCAGCTCTAAAAGtaccctatgcctaggacaa-----tgtaaaataagctc-tctgctttatttcatttgatcctgatgacaacgcc-tagtgagataagcTACAGGAAACTTGGGGGTGGTATGCTACAA-AG-ACAT------ACATTTCAGCAG i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1874662 539 + 4188776 I e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098666 24 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=1451967.000000 s hg38.chr4_KI270787v1_alt 68753 125 + 111943 ----AACTAATCAGTGTTACCTGCTTCTGCTATTCCTGGTCTTCCACATCAGCCAGTCAGTCAGGGAGCAAAGAATAGGACA-----------------AAGCCAGACC-AATAGTAGAA----------------------------------------------------------------------------GGAAAATCACAGCTGCTTCCAAATTGC s panTro5.chr4 119633448 125 - 194502333 ----AACTAATCAGTGTTACCTGCTTCTGCTATTCCTGGTCTTCCACATCAGCCAGTCAGTCAGGGAGCAAAGAATAGGACA-----------------AAGCCAGACC-AATAGTAGAA----------------------------------------------------------------------------GGAAAATCACAGCTGCTTCCAAATTGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121046860 125 - 195804263 ----AACTAATCAGTGTTACCTGCTTCTGCTATTCCTGGTCTTCCACATCAGCCAGTCAGTCAGGGAGCAAAGAATAGGACA-----------------AAGCCAGACC-AATAGTAGAA----------------------------------------------------------------------------GGAAAATCACAGCTGCTTCCAAATTGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478104 124 - 17550833 ----AATTAATCAGTGTTACCTGCTTCTGCTATTCCTGGTCTTCCACATCAGCCAGTCGGTCAGGGAG-AAAGAATAGGACA-----------------AAGCCAGACC-AATAGTAGAA----------------------------------------------------------------------------GGAAAATCACAGCTGCTTCCAAATTGC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69351493 125 - 118206036 ----AACTAATCAGTGTTACCTGCTTCTGCTATTCCTGGTCTTCCCCATCAGCCAGTCAGTCTGGGAGCAAAGAATAGAACA-----------------AAGCCAGACC-AATAGTAGAA----------------------------------------------------------------------------GGAAAATCACAGCTGCTTCCAAATTGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111560589 140 - 190429646 ----AACTAATCAGTGTTACCTGCTTCTGCTATTCCTGGTCTTCCACATCAGCCGATCGGTCTGGGAGCAAAGAATAGGACC--AAAAAAACAGGAGCAAAGCCAGACT-AACAGTAGAA----------------------------------------------------------------------------GGAAAATCATAACTGCTTTTAAATTGC i rheMac8.chr5 I 4 C 0 s macFas5.chr5 110729778 140 - 189454096 ----AACTAATCAGTGTTACCTGCTTCTGCTATTCCTGGTCTTCCACATCAGCCGATCGGTCTGGGAGCAAAGAATAGGACC--AAAAAAACAGGAGCAAAGCCAGACT-AACAGTAGAA----------------------------------------------------------------------------GGAAAATCATAACTGCTTTTAAATTGC i macFas5.chr5 I 4 C 0 s macNem1.NW_012012466v1 13296266 142 + 26754465 ----AACTAATCAGTGTTACCTGCTTCTGCTATTCCTGGTCTTCCACATCAGCCGATCGGTCTGGGAGCAAAGAATAGGACCAAAAAAAAACAGGAGCAAAGCCAGACT-AACAGTAGAA----------------------------------------------------------------------------GGAAAATCATAACTGCTTTTAAATTGC i macNem1.NW_012012466v1 I 4 C 0 s cerAty1.NW_012001307v1 4197846 125 - 5137665 ----AACTAATCAGTGTTACCTGCTTCTGCTATTCCTGGTCTTCCACATCAGCCGATCGGTCTGAGAGCAAAGAATAGGACA-----------------AAGCCAGACT-AACAGTAGAA----------------------------------------------------------------------------GGAAAATCACAACTGCTTTTAAATTTC i cerAty1.NW_012001307v1 I 4 C 0 s chlSab2.chr7 122907412 125 - 135778131 ----AACTAATCAGTGTTACCTGCTTCTGCTATTCCTGGTCTTCCACATCAGCCGATCGGTCTGGGAGCAAAGAATAGGACA-----------------AAGCCAGACT-AACAGTAGAA----------------------------------------------------------------------------GGAAAATCACAACTGCTTTTAAATTGC i chlSab2.chr7 I 4 C 0 s manLeu1.NW_012104388v1 2019533 125 + 2427316 ----AACTAATCAGTGTTACCTGCTTCTGCTATTCCTGGTCTTCCACATCAGCCGATTGGTCTGGGAGCAAAGAATAGGACA-----------------AAGCCAGACT-AACAGTAGAA----------------------------------------------------------------------------GGAAAATCACAACTGCTTTTAAATTGC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1314809 126 + 1448899 ----AACTAATCAGTGTTACCTGCTTCTGCTATTCCTGGTCTTCCACATCAGCCAATCGGTCTGGGAGCAAAGAATAGGACA-----------------AAGTCAGACTAAACAGTAGAA----------------------------------------------------------------------------GGAAAATCACAACTGCTTCTAAATTGC i colAng1.NW_012119221v1 I 4 C 0 s calJac3.chr3 53024885 125 - 190850796 ----AACCAATCAGCGTTAAATGCTTCTGCTATTCCTGGCCTTCGACATCATCCAGTTGGTCTGGCAGCAAAGAACAGGATG-----------------AAGTCATACC-AATTGTAGAA----------------------------------------------------------------------------GGAAAATCACAGCTGCTTCTAAATTGC i calJac3.chr3 I 4 C 0 s saiBol1.JH378162 8185121 125 - 15139346 ----AACCAATCAGCATTAAATGCTTCTGCTATTCCTGGCCTTTGACATCATCCAGTTGGTCTGGCAGCAAAGAATAGGACA-----------------AAGTGATACC-AATTGTAGAA----------------------------------------------------------------------------GGAAAATCACAGCTGCTTCTAAATTGC i saiBol1.JH378162 I 4 C 0 s cebCap1.NW_016107439v1 6970937 201 - 7304997 ----AAACAATCAGTGTTAAATGCTTCTTCTATTCCTGGCCTTCGACATCATCCAGTTGGTCTGGCAGCAAAGAATGGGACA-----------------AAGTCATACC-AATTGTAGAAGGAAAATCACAGCTGCTTCTAAATTGCCCTTGTGTCTGGCATCAAAGAATGGGACAAAGTCATACCAATTGTAGAAGGAAAATCACAGCTGCTTCTAAATTGC i cebCap1.NW_016107439v1 I 4 C 0 s aotNan1.NW_018493494v1 9386852 120 - 11631747 ----AACCAATCAGCGTTAAATGCTTCTGCTATTCCTGGCCTT-----TCATCCAGTTAGTCTGGCAGCAAAGAATAGGACA-----------------AAGTCATACC-AATTGTAGAA----------------------------------------------------------------------------GGAAAATCACAGCTGCTTCTAAATTGC i aotNan1.NW_018493494v1 I 4 C 0 s micMur3.chrUn_NW_017968520v1 1788354 125 + 3286835 ----AACTCATCAGTGTTAACTGCTTCTGCTATTTCTGGTCTTCCACATCAGCCAATTGGTCTGGCAGCAAAGGGTGGGACA-----------------AAGCCAGACC-AGTTTTAGAA----------------------------------------------------------------------------GGAAAATCACAGCTGCTTCCAAACTGC i micMur3.chrUn_NW_017968520v1 I 4 I 178 s proCoq1.NW_012140747v1 1875201 125 + 4188776 ----AACTCATCAGCGTTAACTGCTTCTGCTATTTCTGGTCTTCCACACCAGCCAATTGGTCTGGCAGCGAAGGGTGGGACA-----------------AAGCCAGACC-AATTTTAGAA----------------------------------------------------------------------------GGAAAATCACAGCTGCTTCCAAACTGC i proCoq1.NW_012140747v1 I 539 C 0 s canFam3.chr13 48008861 108 + 63241923 AACCAACTCATCAATACTCATTGCTTCTGCTATTTCTGGTACTCCATGTCAGCCAATCAGGCTGGCA-CAAAGGGTAGGACA------------------GGCCAGATC----------A----------------------------------------------------------------------------GG----------CCCCTTCCAAATTGC i canFam3.chr13 C 0 C 0 e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098666 24 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=1765719.000000 s hg38.chr4_KI270787v1_alt 68878 152 + 111943 CCTCACATTTACCAATTTCATCCACCCTGGGTCCTGCCTTTGGAGTGCTCCCCATTCCTC-CTGCTCTCTGACATCCCCAGGAATGGA----GAGGGAGGCACCAGAGGGGAGATGACTGACAGGACAGGGCCACAGTGAGACATATT--GAGACCCAC s panTro5.chr4 119633573 152 - 194502333 CCTCACGTCTACCAATTTCATCCACCCTGGGTCCTGCCTTTGGAGTGCTCCCCATTCCTC-CTGCTCTCTGACATCCCCAGGAATGGA----GAGGGAGGCACCAGAGGGGAGACGACTGACAGGACAGGGCCACAGTGAGACATATT--GAGACCCAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121046985 152 - 195804263 CCTCACGTCTACCAATTTCATCCACCCTGGGTCCTGCCTTTGGAGTGCTCCCCATTCCTC-CTGCTCTCTGACATCCCCAGGAATGGA----GAGGGAGGCACCAGAGGGGAGACGACTGACAGGACAGGGCCACAATGAGACATATT--GAGACCCAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478228 152 - 17550833 CCTCACGTCTACCAATTTCATCCACCCTGGGTCCTGCCTTTGGAGTGCTCCCCATTCCTC-CTGCTCTCTCACATCCCCAGGAATGGA----GAGAGAGGCACCAGAGGGGAGATGACTGACAGGACAGGGCCACAGTGAGACATATT--GAGACCCAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69351618 152 - 118206036 CCTCACGTCCGCCAATTTCATCCACCCTGGGTCCTGCCTTTGGAGAGCTCCCCATTCCTC-CTGCTCTCTCACATCCCCAGGAATGGA----GAGGGAGGCACCAGAGGGGAGATGACTGACAGGACAGGGCCACAGTGAGACATATT--GAGACCTAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111560729 154 - 190429646 CCTCGCGTCTGCCAATTTCATCCACCCCGGGTCCTGCCTTTGAAGTGCTCCCCATTCCTC-CTGCTCTCTCACATCCACAGGAATGGA----GAGGGAGGCGCCAGAGGGGAGATGACTGATAGGACAGGGCCACAGTGAGACATATTGAGAGACCCAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110729918 154 - 189454096 CCTCGCGTCTGCCAATTTCATCCACCCCGGGTCCTGCCTTTGAAGTGCTCCCCATTCCTC-CTGCTCTCTCACATCCACAGGAATGGA----GAGGGAGGCGCCAGAGGGGAGATGACTGATAGGACAGGGCCACAGTGAGACATATTGAGAGACCCAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13296408 153 + 26754465 CCTCGCGTCTGCCAATTTCATCCACCCCGGGTCCTGCCTTTGAAG-GCTCCCCATTCCTC-CTGCTCTCTCACATCCACAGGAATGGA----GAGGGAGGCGCCAGAGGGGAGATGACTGATAGGACAGGGCCACAGTGAGACATATTGAGAGACCCAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4197971 152 - 5137665 CCTTGCGTCTGCCAATTTCATCCACCCTGGGTCCTGCCTTTGAAGTGCTCCCCATTCCTC-CTGCTCTCTCACATCCACAGGAATGGA----GAGGGAGGCGCCAGAGGGGAGATGACTGATAGGACAGGGCCACAGTGAGACATATT--GAGACCCAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122907537 152 - 135778131 CCTCGAGTCTGCCAATTTCATCCACCCTGGGTCCTGCCTTTGAAGTGCTCCCCATTCCTC-CTGCTCTCTCACATCTACAGGAATGGA----GAGGGAGGCGCCAGAGGGGAGATGACTGATAGGACAGGGCCACAGTGAGACATATT--GAAACCCAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2019658 152 + 2427316 CCTCGCGTCTGCCGATTTCATCCACCCCGGATCCTGCCTTTGAAGTGCTCCCCATTCCTC-CTGCTCTCTCACATCCACAGGAATGGA----GAGGGAGGCGCCAGAGGGGAGACGACTGATAGGACAGGGCCACAGTGAGACATATT--GAGACCCAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1314935 152 + 1448899 CCTGGCGTCTGCCAATTGCATCCACCCTGGGTCCTGCCTTTGAAGTGCTCCCCATTCCTC-CTGCTCTCTCACATCCACAGGAATGGA----GAGGGAGGCGCCAGAGGGGAGATGAATGACAGGACAGGGCCACAGTGAGGCATATT--GAGACCCAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025010 152 - 190850796 CCCCATGTCTGTCAGTTTCATCCACCCTGGGTCCTGCCTTTGGAATGCTCCCCATTCCTC-CTGCTCTCTCACATCCCCAGGAATGGA----GAGGGAGGGTCCAGAGGGGAGATGACTGACAGAACAGGGACACAGTGAGACATATT--GAGACCCAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185246 152 - 15139346 CCTCATGTCTGTCAGTTTCATCCACCCTGGGTCCTGTCTTTGGAATGCTCCCCATTCCTC-CTGCTCTCTCACATCCCCAGGAATGGA----GAGGGATGGTCCAGATGGGAGATGACTGACAGGACAGGGCCACCGTGAGACATACT--GAGACCCAC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971138 152 - 7304997 CCTTGTGTCTGTCAGTTTCATCCATCCTGTGTCCTGCCTTTGGAATGCTCCCCATTCCTC-CTGCTCTCTCACATCCCCAGGAACAGA----GAGGGAGGGTCCAGAGAGGAGATGACTGACAGGACAGGGCCACAGTAAGACATATT--GAGACCCAC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9386972 150 - 11631747 CCTC--GTCTGTCAGTTTCATCCACCCTGGGTCCTGCCTTTGAAATGCTCCCCATTTCTC-CTGCTCTCTCACATCCCCAGGAACGGA----GAGGGAGGGTCCAGAGGGGCGATGACTGACAGGACAGGGCCACAGTGAGACATACT--GAGACCGAC i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1875326 152 + 4188776 TCTCGTGTCCACCAGTTTCACACACCCTAGTTTCTGCCTTTTGAATGCTCCCAAGTCCTC-ATACTCTCTCATAGCCCCAGGGATGGA----GTGGGAGGGGCCAGAGGGGAGACGACTGACAGGACAGGGCTACAGTAAGACGTGCT--GAGACCCAC i proCoq1.NW_012140747v1 C 0 I 176 s canFam3.chr13 48008969 157 + 63241923 TCTGCTGCCCACTAGCATCATGTATCCCACTTCCTGCCTTTTGAGTGTTCCCAGTTCCTTGTTATTCTCTGCAATTCCCTGGAATGGAGTCGGTGGGTAGGGCTAGAGAGGTGATGACCAACAGGACAGAGCTGCCATGGGAAATAAG--GAGGCTCAC i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1788479 178 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098666 24 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=46740.000000 s hg38.chr4_KI270787v1_alt 69030 5 + 111943 CAGGG s panTro5.chr4 119633725 5 - 194502333 CAGGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047137 5 - 195804263 CAGGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478380 4 - 17550833 C-GGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69351770 5 - 118206036 CAGGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111560883 5 - 190429646 CAGGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730072 5 - 189454096 CAGGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13296561 5 + 26754465 CAGGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198123 5 - 5137665 CAGGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122907689 5 - 135778131 CAGGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2019810 5 + 2427316 CAGGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315087 5 + 1448899 CAGGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025162 5 - 190850796 CAGCG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185398 5 - 15139346 CAGCG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971290 5 - 7304997 CAGCG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387122 5 - 11631747 CAGCG i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48009126 5 + 63241923 CAGGG i canFam3.chr13 C 0 I 12 e proCoq1.NW_012140747v1 1875478 176 + 4188776 I e micMur3.chrUn_NW_017968520v1 1788479 178 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098666 24 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=189412.000000 s hg38.chr4_KI270787v1_alt 69035 14 + 111943 GTCATCTGCTCTGA s panTro5.chr4 119633730 14 - 194502333 GTCATCTGCTCTGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047142 14 - 195804263 GTCATCTGCTCTGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478384 14 - 17550833 GTCATCTGCTCTGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69351775 14 - 118206036 GTCATCTGCTCTGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111560888 14 - 190429646 GTCATCTGCTCTGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730077 14 - 189454096 GTCATCTGCTCTGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13296566 14 + 26754465 GTCATCTGCTCTGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198128 14 - 5137665 GTCATCTGCTCTGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122907694 14 - 135778131 GTCATCTGCTCTGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2019815 14 + 2427316 GTCATCTGCTCTGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315092 14 + 1448899 GTCATCTGCTCTGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025167 14 - 190850796 GTCATCTGCTCTCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185403 14 - 15139346 GTCATCTGCTCTGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971295 14 - 7304997 GTCATCTGCTCTGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387127 14 - 11631747 GTCATCTGCTCTGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1788657 14 + 3286835 GTCATCTACGCTGA i micMur3.chrUn_NW_017968520v1 I 178 C 0 s canFam3.chr13 48009143 14 + 63241923 GTCATCTAATCTGA i canFam3.chr13 I 12 C 0 e proCoq1.NW_012140747v1 1875478 176 + 4188776 I e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098666 24 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=717093.000000 s hg38.chr4_KI270787v1_alt 69049 54 + 111943 GGTCACA-GAGCTA-TGCTGCAGTGCAGCTGCATCCCTGGATAGTAATAGAAATAT s panTro5.chr4 119633744 54 - 194502333 GGTCATA-GAGCTA-TGCTGCAGTGCAGCTGCATCCCTGGACAGTAATAGAAATAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047156 54 - 195804263 GGCCATA-GAGCTA-TGCTGCAGTGCAGCTGCATCCCTGGACAGTAATAGAAATAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478398 54 - 17550833 GGTCATA-GAGCTA-TGCTGCAGTGCAGCTGCATCCCTGGATAGTAATAGAAATAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69351789 54 - 118206036 GGTCATA-GAGCTA-TGCCGCAGTGCAGCTGCATCCCTGGATAGTAATAGAAATAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111560902 54 - 190429646 GGTCATA-GAGCTA-TGCTGCAGTGCAGCTGCATCCCTGGATGGTGATAGAAATAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730091 54 - 189454096 GGTCATA-GAGCTA-TGCTGCAGTGCAGCTGCATCCCTGGATGGTGATAGAAATAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13296580 54 + 26754465 GGTCATA-GAGCTA-TGCTGCAGTGCAGCTGCATCCCTGGATGGTGATAGAAATAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198142 54 - 5137665 GGTCATA-GAGCTA-TGCTGCAGTGCAGCTGCATCCCTGGATAGTGATAGAAATAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122907708 54 - 135778131 GGTCATA-GAGCTA-TGCTGCAGTGCAGCTGCATCCCTGGATAGTGATAGAAATAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2019829 54 + 2427316 GGTCATA-GAGCTA-TGCTGCAGTGCAGCTGCATCCCTGGATAGTGATAGAAATAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315106 54 + 1448899 GGTCATA-GAGCTG-TGCTGTAGTGCAGCTGCATCCCTGGATAGTGATAGAAATAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025181 54 - 190850796 GGTCATA-GAGCTA-CACTGCAGTGCAGCTGCATCCCTGGATAGTGATAGAAATAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185417 54 - 15139346 GGTCATA-GAGCTA-CACTGCAGTGCAGCTGCAGCCCTGGATAGTGATAGAAATAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971309 54 - 7304997 GGTCATA-GAGCTA-CGCTGCAGTGCAGCTGCATCCCTAGATAGTGATAGAAATAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387141 54 - 11631747 GGTCATA-GAGCTA-CGCTGCAGTGCAGTTGCATCCCTGGATAGTGATAGAAATAT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1788671 53 + 3286835 GGTCATC-GAGCTA-TGCTACAGTGTAGCTACATCCCTGGCTAGTGACAG-AATAT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s canFam3.chr13 48009157 55 + 63241923 GGACATG-GAGCTACCACCAGAGTGCAGCTTTGTCCCTGGAGAGTGATAGAAGTAT i canFam3.chr13 C 0 I 65 s dasNov3.JH568349 4098690 55 - 5279953 GGTCACCTGAGCTG-AGCAACGGCACAGCGGCGTTCCTGAACAATGATAGAAATAC i dasNov3.JH568349 I 24 C 0 e proCoq1.NW_012140747v1 1875478 176 + 4188776 I e mm10.chr5 76420456 242 + 151834684 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=566288.000000 s hg38.chr4_KI270787v1_alt 69103 50 + 111943 TAT-------------------ATAAGAACACAGGGCACCTGCTCCAAGTCAACCCTTGTTGAATAAAT s panTro5.chr4 119633798 50 - 194502333 TAT-------------------ATAAGAACACAGGGCACCTGCTCCAAGTCAACCCTTGTTGAATAAAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047210 50 - 195804263 TAT-------------------ATAAGAACACAGGGCACCTGCTCCAAGTCAACCCTTGTTGAATAAAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478452 50 - 17550833 TAT-------------------ATAAGAACACAGGGCACCTGCTCCAAGTCAACCCTTGTTGAATAAAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69351843 50 - 118206036 TAT-------------------AAAAGAACACAGGGCACCTGTTCCAAGTCAACCCTTGTTGAATAAAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111560956 69 - 190429646 TATCACATGTCCTATCACAATGATAAGGACACAGGGCACCTGCTCCAGGTCAACCCTTGTTGAATAAAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730145 69 - 189454096 TATCACATGTCCTATCACAATGATAAGGACACAGGGCACCTGCTCCAGGTCAACCCTTGTTGAATAAAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13296634 69 + 26754465 TATCACATGTCCTATCACAATGATAAGGACACAGGGCACCTGCTCCAGGTCAACCCTTGTTGAATAAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198196 69 - 5137665 TATCACATGTCCTATCACAATGATAAGGACACAGGGCACCTGCTCCAGGTCAACCCTTGTTGAATAAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122907762 69 - 135778131 TATCACATGTCCTATCACAATGATAAGGACACAGGGCACCTGCTCCAGGTCAACCCTTGTTGGATAAAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2019883 69 + 2427316 TATCACATGTCCTATCACAATGATAAGGACACAGGGCACCTGCTCCAGGTCAACCCTTGTTGAATAAAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315160 53 + 1448899 TAT----------------ATGATAAGGACACAGGGTACCTGCTCCAGGTCAACCCTTGTTCAATAAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025235 50 - 190850796 -------------------ATGATAAGAACACAGGGCACCTGCTTTACATCAACCCTTGTTGAATAAAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185471 50 - 15139346 -------------------ATGATAAGAACACAGGGCACCTGCTCCAGGTCAACCCTTGTTGAATAAAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971363 50 - 7304997 -------------------ATGATAAGAACACAGGGCACCTGCTTCAGGTCAACCCTTGTTGAATAAAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387195 47 - 11631747 ----------------------ATAAGAACACAGGGCACCTGCTCCAGTTCAAGCCTTGTTGAATAAAT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1788724 50 + 3286835 -------------------ATAATAAGAACACAAGGTGCCTGCTCCCAGTGAACCCTTGTTGGATAAAT i micMur3.chrUn_NW_017968520v1 C 0 I 33 s dasNov3.JH568349 4098745 53 - 5279953 TAC----------------AGAATGAGAGCACGGGGTGTCTGCTCAGGGTGAACCCTTGCTGGATAAAT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1875478 176 + 4188776 I e mm10.chr5 76420456 242 + 151834684 I e otoGar3.GL873602 8620235 1867 + 8790067 I e canFam3.chr13 48009212 65 + 63241923 I a score=220540.000000 s hg38.chr4_KI270787v1_alt 69153 26 + 111943 -------AATAATAACACTGTGTAACAGGTAAT s panTro5.chr4 119633848 23 - 194502333 -------AATAA---CACTGTGTAACAGCTAAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047260 23 - 195804263 -------AATAA---CACTGTGTAACAGCTAAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478502 26 - 17550833 -------AATAATAACACTGTGTAACAGGTAAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69351893 26 - 118206036 -------AATAATAACACTGTGTAACAGGTAAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561025 23 - 190429646 -------AATAC---CACTGTGTAACAGGTAAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730214 23 - 189454096 -------AATAC---CACTGTGTAACAGGTAAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13296703 23 + 26754465 -------AATAC---CACTGTGTAACAGGTAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198265 23 - 5137665 -------AATAC---CACTGTGTAACAGGTAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122907831 23 - 135778131 -------AATAC---CACTGTGTAACAGGTAAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2019952 23 + 2427316 -------AATAC---CACTGTGTAACAGGTAAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315213 23 + 1448899 -------AATAC---CACTGTGTAACAGGTAAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025285 23 - 190850796 -------AACAG---CACTGTGTAACAGGTAAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185521 23 - 15139346 -------AACAG---CACTGTGTAACAGGTAAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971413 23 - 7304997 -------AACAG---CACTGTGTAACAGGTAAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387242 23 - 11631747 -------TACAA---CATTGTGTAACAGGCAAC i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4098798 30 - 5279953 GTTGATAAAGAA---CACGATGTAGCAGGTAAT i dasNov3.JH568349 C 0 I 5 e proCoq1.NW_012140747v1 1875478 176 + 4188776 I e micMur3.chrUn_NW_017968520v1 1788774 33 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I e otoGar3.GL873602 8620235 1867 + 8790067 I e canFam3.chr13 48009212 65 + 63241923 I a score=106239.000000 s hg38.chr4_KI270787v1_alt 69179 14 + 111943 TGTGAGCATG----------------------TGCT s panTro5.chr4 119633871 14 - 194502333 TGTGAGCATG----------------------TGCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047283 14 - 195804263 TGTGAGCATG----------------------TGCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478528 14 - 17550833 TGTGAGCATG----------------------TGCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69351919 14 - 118206036 TGTGAACATG----------------------TGCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561048 14 - 190429646 TGTGAGCATG----------------------TTCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730237 14 - 189454096 TGTGAGCATG----------------------TTCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13296726 14 + 26754465 TGTGAGCATG----------------------TCAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198288 14 - 5137665 TGTGAGCATG----------------------ttct i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122907854 35 - 135778131 TGTGAgc-tgccgccgccgccgccgccgccgcTTct i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2019975 14 + 2427316 TGTGAGCATG----------------------TTCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315236 14 + 1448899 TGTGAGCATG----------------------TGCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025308 14 - 190850796 GGTGAGCATG----------------------TGCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185544 14 - 15139346 GGTGAGCATG----------------------TGCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971436 14 - 7304997 GGTGAGCATG----------------------TGCT i cebCap1.NW_016107439v1 C 0 I 124 s aotNan1.NW_018493494v1 9387265 14 - 11631747 GGTGAGCATG----------------------CGCT i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1875478 176 + 4188776 I e micMur3.chrUn_NW_017968520v1 1788774 33 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098828 5 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I e canFam3.chr13 48009212 65 + 63241923 I a score=5783.000000 s hg38.chr4_KI270787v1_alt 69193 19 + 111943 TCTTCttctttttctt-------------------------------ttc s panTro5.chr4 119633885 19 - 194502333 TCTTCTTCTttttctt-------------------------------ttc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047297 19 - 195804263 TCTTCTTCtttttctt-------------------------------ttc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478542 19 - 17550833 TCTTCTTCtttttctt-------------------------------ttc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69351933 19 - 118206036 TCTTCTTCtttttctt-------------------------------ttc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561062 14 - 190429646 TCTTCCTCttc------------------------------------ttt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730251 14 - 189454096 TCTTCCTCttc------------------------------------ttt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13296740 26 + 26754465 TCTTCCTCTTCTTCt------------------------ttttttttttt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198302 17 - 5137665 tcttcttcttcttc---------------------------------ttc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122907889 50 - 135778131 tctccttctccttctccttctccttctccttctccttctccttctccttc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2019989 15 + 2427316 TCttcttcttcttct----------------------------------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315250 20 + 1448899 ttttctttttcttttct------------------------------ttt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025322 15 - 190850796 GCTGCCttttttttt----------------------------------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185558 5 - 15139346 GCTGC--------------------------------------------- i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9387279 7 - 11631747 GCTGCtt------------------------------------------- i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1875478 176 + 4188776 I e micMur3.chrUn_NW_017968520v1 1788774 33 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098828 5 - 5279953 I e cebCap1.NW_016107439v1 6971450 124 - 7304997 I e otoGar3.GL873602 8620235 1867 + 8790067 I e canFam3.chr13 48009212 65 + 63241923 I a score=2356876.000000 s hg38.chr4_KI270787v1_alt 69212 260 + 111943 tttttttttttttttt----gagggggagtctcgctctgttgcccaggctgaagtgcagtggtgcaatctcggctcactgaaacctccgcctcccgggttcaagcgattctcttgcctcagcctcctgagtagcagggattacaggcgcgcaccaccaggcctggctaa---------ttttgtatttttagtagtgatggaatttcatcatgttggccaggctggtctcaaactcctgacctcaagtgatccacccacctcggcctcccaaa s panTro5.chr4 119633904 264 - 194502333 ttttttttttttttttttttgagggggagtctcgctctgttgcccaggctgaagtgcagtggtgcaatctcggctcactgaaacctccacctcctgggttcaagcgattctcttgcctcagcctcctgagtagcagggattacaggcgcacaccaccaggcctggctaa---------ttttgtatttttagtagtgatggaatttcatcatgttggccaggctggtctcaaactcctgacctcaagtgatccacccacctcggcctcccaaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047316 262 - 195804263 tttttttttttttttt--ttgagggggagtctcgctctgttgcccaggctgaagtgcagtggtgcaatctcggctcactgaaacctccacctcccgggttcaagcgattctcttgcctcagcctcctgagtagcagggattacaggcgcacatcaccaggcctggctaa---------ttttgtatttttagtagtgatggaatttcatcatgttggccaggctggtctcaaactcctgacctcaagtgatccacccacctcggcctcccaaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478561 262 - 17550833 tttttttttttttttt--ttgagggggagtctcgctctgttgcccaggctgaagtgcagtggtgcaatctcggctcactgaaacctctgcctcccgggttcaagcgattctcttgcctcagcctcctgagtagcagggattacaggcgcacaccaccatgcccggctaa---------ttttgtatttttagtagtgatggaatttcatcatgttggtcaggttggtctcaaactcctgacctcaagtgatccacccacctcagcctcccaaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69351952 263 - 118206036 ttttcttttttttttt-tttgagggggagtctcgctctgttgcctaggctgaagtgcagtggcacaatctcggctcactgaaacctctgcctcccgggttcaagcgattctgttgtctcagcctcctgagtagcagggattacaggcacgtgccaccatgcccggctaa---------ttttgtatttttagtagagacggaatttcatcatgttggccaggctggtctcgaactcctgacctcaagtgatccacccacctcggcatcccaaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561076 267 - 190429646 tttttttttttttttt--ttgaagaggaatctcactctgaagcccaggctgaagcgcagtggtgcaatctcggcttactgaaacctccgcctcccaggttcaagcgattctcttgcctgaaccttctgagtagcaggtattacaggcgtatgccaccatgcccaactaa----tatttttttgtatttttagtagagatgggatttcatcatgttggccaggctggtctcgaactcctgacctcaagtgatctgtccacctcggcctcccaaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730265 267 - 189454096 tttttttttttttttt--ttgaagaggaatctcactctgaagcccaggctgaagcgcagtggtgcaatctcggcttactgaaacctccgcctcccaggttcaagcgattctcttgcctgaaccttctgagtagcaggtattacaggcgtatgccaccatgcccaactaa----tatttttttgtatttttagtagagatgggatttcatcatgttggccaggctggtctcgaactcttgacctcaagtgatctgtccaccttggcctcccaaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13296766 266 + 26754465 tttttttttttttttt--ttGAAGAggagtctcactctgaagcccagcttgaagcgcagtggtgcaatctt-gcttactgaaacctccgcctcccaggttcaagcgattctcttgcctgaaccttctgagtagcaggtattacaggcgtgtgccaccatgcccaactaa----tatttttttgtatttttagtagagatgggatttcatcatgttggccaggctggtctcgaactcctgacctcaagtgatctgtccacctcggcctcccaaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198319 266 - 5137665 ttcttttttttttttt--ttgaagaggagtctcactctgaagcccaggctgaagcgcagtggtgcaatctcggctcactgaaacctctgcctcccaggttcaagcgattctcttgcctgaaccttctgagtagcaggtattacaggcatatgccaccatgcccaactaa----t-tttttttgtatttttagtagagacgggattttatcatgttggccaggctggtctcgaactcctgacctcaagtgatctgtccaccttggcctcccaaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122907939 271 - 135778131 tccttctccttcttct--tcgaagaggagtctcactctgcagcccaggctgacgcacagtagtgcaatctcggctcactgaaacctccgcctcccaggttcaagtgattctcttgcctgaaccttctgagtagcaggtattacaggcgtgtgccaccatgcccaactaatttttttttttttgtatttttagtagagacgggatttcatcatgttggccaggctggtctcgaactcctgacctcaagtgatctgtccacctcggcctcccaaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2020004 264 + 2427316 ---ttttttttttttt--ttgaagaggagtctcactctgaagcccaggctgaggcgcagtggtgcaatctcggcttactgaaacctccacctcccaggttcaagcaattctcttgcctgaactttctgagtggcaggtattacaggcgtgtgccaccatgcccaactaa----tatttttttgtatttttagtagagatgggatttcatcatgttggccaggctggtctcgaactcctgacctcaagtgatctgtccacctcggcctcccaaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315270 264 + 1448899 cttttttttttttttt--ttgaagaggagcctcactctgaagcccaggctgaagtgcagtggtgcaatctcggctcactgaaacctccgcctcccaggttcaagcgattctcttgcctcaaccttctgagtagcaggtattacaggcgtgtgccaccatgcccaactaa------tttttttgtatttttagtcgagacgggatttcatcatgttggccaggctggtctcgaactcctgacctcaa-tgatctgtccacctcgacctcccaaa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025337 263 - 190850796 --tttttttttttttt--ttgagagggagtctggctctgttgcccaggcagaagtgcagtggcacaatcttggctgactataacctctgcctcctgggttcaagcaattctcctgccttagcctcctgagtaacagggattacaggcgtgtgccaccatatctggctag------ttttttcttatttttagtagagatgggatttcaccatgttggccagactgatctcaaactcctgacctcaagtgatccgcccacttccacctcccaaa i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185563 258 - 15139346 -------ttttttttt--ttgagagggagtctggccctgttgcccaggcagaagtgcagtggcacaatcttggctgactataatctctgcctcctgggttcaagcaattctcctgccttagcctcctgagtaacagggattacaggcacatgccaccatgtctggctag------ttttttcttatttttagtagagatgggatttcaccatgttggccagactgatcttgaactcctgacctcaagtgatctgcccactttggcttcccaaa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971574 262 - 7304997 --tttttttttttttt--ttaagagggagtctggctctgttgccca-gcagaagtgcagtgggacaatctcggctaaatgtaacctctgcctcctgagttcaagcaattctcctgccttagcctcctgagtagcagggattacaggcgcgtgccaccatgtctggctag------ttttttcttatttttagtagagccgggatttcaccatgttggccagactgatctcaaactcctgacctcaagtgatctgcccactttggcctcccaaa i cebCap1.NW_016107439v1 I 124 C 0 s aotNan1.NW_018493494v1 9387286 252 - 11631747 --------tttttttt--ttgagagggagtctgcctctgttgcccagacagaagtgcagtggcacaatctcagctgactgtaacctctgcctcctgggttcaagcaattctcctgccttagcctcctgagtaacagggattacaggcgcatgccaccatgtctggctag------tt-----ttatttttagtagagatgggatttcaccatgttggccagactgatctcgaactcctggcttcaagtgatctgcccacctcggccgcccaaa i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1875478 176 + 4188776 I e micMur3.chrUn_NW_017968520v1 1788774 33 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098828 5 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I e canFam3.chr13 48009212 65 + 63241923 I a score=347802.000000 s hg38.chr4_KI270787v1_alt 69472 34 + 111943 gtgctgggattacaggcgtgagccactgcgccca s panTro5.chr4 119634168 34 - 194502333 gtgctgggattacaggcgtgagccactgcgccca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047578 34 - 195804263 gtgctgggattacaggcgtgagccactgcgccca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478823 34 - 17550833 gtgctgggattacaggcatgagccactgcgccca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352215 34 - 118206036 gtgctgggattacaggcgtgagccactgcaccca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561343 34 - 190429646 gtgctgggattacaggcgtgagccactgtaccca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730532 34 - 189454096 gtgctgggattacaggcgtgagccactgtaccca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13297032 34 + 26754465 gtgctgggattacaggcgtgagccactgtaccca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198585 34 - 5137665 gtgctgggattacaggcatgagccactgtaccca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122908210 34 - 135778131 gtgctgggattacaggcgtgagccactgtaccca i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2020268 34 + 2427316 gtgctgggattacaggcgtgagccactgtaccca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315534 34 + 1448899 gtgctgggattacaggcatgagccactgtaccca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025600 34 - 190850796 gtgctgggattacaggcatgagccgccgcaccca i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185821 34 - 15139346 gtgctggaattacaggcatgagccactgcacccg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971836 34 - 7304997 gtgccgggattacaggcatgagctgctgcaccca i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387538 34 - 11631747 gtcctgggattacaggcatgagccgccgcacccg i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48009277 20 + 63241923 GTGCTGTGAT---AGGCAACAGT----------- i canFam3.chr13 I 65 C 0 e proCoq1.NW_012140747v1 1875478 176 + 4188776 I e micMur3.chrUn_NW_017968520v1 1788774 33 + 3286835 I e mm10.chr5 76420456 242 + 151834684 I e dasNov3.JH568349 4098828 5 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=51080.000000 s hg38.chr4_KI270787v1_alt 69506 4 + 111943 gccA s panTro5.chr4 119634202 4 - 194502333 gccA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047612 4 - 195804263 gccA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478857 4 - 17550833 gccA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352249 4 - 118206036 gccA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561377 4 - 190429646 gccA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730566 4 - 189454096 gccA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13297066 4 + 26754465 gccA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198619 4 - 5137665 gccA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122908244 4 - 135778131 gccA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2020302 4 + 2427316 gccA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315568 4 + 1448899 gccA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025634 4 - 190850796 gccA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185855 4 - 15139346 gccA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971870 4 - 7304997 gccA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387572 4 - 11631747 gccA i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76420698 4 + 151834684 GTCA i mm10.chr5 I 242 C 0 e proCoq1.NW_012140747v1 1875478 176 + 4188776 I e micMur3.chrUn_NW_017968520v1 1788774 33 + 3286835 I e dasNov3.JH568349 4098828 5 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I e canFam3.chr13 48009297 0 + 63241923 C a score=25385.000000 s hg38.chr4_KI270787v1_alt 69510 2 + 111943 GA s panTro5.chr4 119634206 2 - 194502333 GA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047616 2 - 195804263 GA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478861 2 - 17550833 GA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352253 2 - 118206036 GA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561381 2 - 190429646 GA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730570 2 - 189454096 GA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13297070 2 + 26754465 GA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198623 2 - 5137665 GA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122908248 2 - 135778131 GA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2020306 2 + 2427316 GA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315572 2 + 1448899 GA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025638 2 - 190850796 GA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185859 2 - 15139346 GA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971874 2 - 7304997 GA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387576 2 - 11631747 GA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1788807 2 + 3286835 GA i micMur3.chrUn_NW_017968520v1 I 33 C 0 s mm10.chr5 76420702 2 + 151834684 GT i mm10.chr5 C 0 C 0 s canFam3.chr13 48009297 2 + 63241923 GT i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1875478 176 + 4188776 I e dasNov3.JH568349 4098828 5 - 5279953 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=58557.000000 s hg38.chr4_KI270787v1_alt 69512 5 + 111943 GCATG s panTro5.chr4 119634208 5 - 194502333 GCATG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047618 5 - 195804263 GCATG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478863 5 - 17550833 GCATG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352255 5 - 118206036 GCATG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561383 5 - 190429646 GCGTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730572 5 - 189454096 GCGTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13297072 5 + 26754465 GCGTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198625 5 - 5137665 GCGTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122908250 5 - 135778131 GTGTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2020308 5 + 2427316 GCGTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315574 5 + 1448899 GCGTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025640 5 - 190850796 GCATG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185861 5 - 15139346 GCATG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971876 5 - 7304997 GCTCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387578 5 - 11631747 GCATG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1788809 5 + 3286835 GCATA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s mm10.chr5 76420704 5 + 151834684 GTTTG i mm10.chr5 C 0 C 0 s canFam3.chr13 48009299 5 + 63241923 ATATG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4098833 5 - 5279953 GCATG i dasNov3.JH568349 I 5 C 0 e proCoq1.NW_012140747v1 1875478 176 + 4188776 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=448754.000000 s hg38.chr4_KI270787v1_alt 69517 28 + 111943 TGCTTCTTAGTTGATAAAACTTAGCCAG s panTro5.chr4 119634213 28 - 194502333 TGCTTCTTAGTTGATAAAACTTAGCCAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047623 28 - 195804263 TGCTTCTTAGTTGATAAAACTTAGCCAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478868 28 - 17550833 TGCTTCTTAGTTGATAAAACTTAGCCAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352260 28 - 118206036 TGCTTCTTAGTTGATAAGACTTAGCCAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561388 28 - 190429646 TGCTCCTTAGTTGATAAAACTTAGCCAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730577 28 - 189454096 TGCTCCTTAGTTGATAAAACTTAGCCAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13297077 28 + 26754465 TGCTCCTTAGTTGATAAAACTTAGCCAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198630 28 - 5137665 TGCTCCTTAGTTGATAAAACTTAGCCAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122908255 28 - 135778131 TGCTCCTTAGTTGATAAAACTTAGCCAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2020313 28 + 2427316 TGCTCCTTAGTTGATAAAACTTAGCCAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315579 28 + 1448899 TGCTTCTTAGTTGATAAATCTTAGCCAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025645 28 - 190850796 TGCTCCTTAGTTGATAAAACTTAACGAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185866 28 - 15139346 TGCTTCTTAGTTGATAAAACTTAGCGAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971881 28 - 7304997 TGCTTCTTAGTTGATGAAACTTAGCGAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387583 28 - 11631747 TGCTTCTTAGTTGATAAAACTTAGCGAG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1788814 28 + 3286835 TGCTTCTTAGTTGATAAAACTCAGCCAG i micMur3.chrUn_NW_017968520v1 C 0 I 63 s proCoq1.NW_012140747v1 1875654 28 + 4188776 TGCTTCTTAGTTGATAAAACTCAGCCAG i proCoq1.NW_012140747v1 I 176 I 65 s mm10.chr5 76420709 28 + 151834684 GACTCCCTGACTACTGAAACTCAGACAG i mm10.chr5 C 0 I 3 s canFam3.chr13 48009304 28 + 63241923 AGCTTCCTAGTTGATAAAACTCAGCCAG i canFam3.chr13 C 0 I 3 s dasNov3.JH568349 4098838 27 - 5279953 AGCTTCCTAGTTCAT-AAACTCAGCCAG i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8620235 1867 + 8790067 I a score=775468.000000 s hg38.chr4_KI270787v1_alt 69545 70 + 111943 GTTCAAGTGTGCTGGGCCTTTTGATCTCCAACAGGGGCCCAACATTACGATGGCTCACCTATTGTTCCCA s panTro5.chr4 119634241 70 - 194502333 GTTCAAGTGTGCTGGGCCTTTTGATCTCCAACAGGGGCCCAACATTACGATGGCTCACCTATTGTTCCCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047651 70 - 195804263 GTTCAAGTGTGCTGGGCCTTTTGATCTCCAACAGGGGCCCAACATTACGATGGCTCACCTATTGTTCCCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478896 70 - 17550833 GTTCAAGTGTGCTGGGCCTTTTGATCTCCAACAGGGGCCCAACATTACGATGGCTCACCTATTGTTCCCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352288 70 - 118206036 GTTCAAGTGTGCTGGGCCTTTTGATCTCCAACAGGGGCCCAACATTACGATGGCTCACCTACTGTTCCca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561416 70 - 190429646 GTTCAAGGGTGCTGGGCCTTTTGATCTCCAACAGGGGCCCAAGGTTACCATAGCTCACCTATTGTTTCCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730605 70 - 189454096 GTTCAAGGGTGCTGGGCCTTTTGATCTCCAACAGGGGCCCAAGGTTACCATAGCTCACCTATTGTTTCCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13297105 70 + 26754465 GTTCAAGGGTGCTGGGCCTTTTGATCTCCAACAGGGGCCCAAGGTTACCATAGCTCACCTATTGTTTCCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198658 70 - 5137665 GTTCAAGGGTGCTGGGCCTTTTGATCTCCAACAGGGGCCCAAGGTTACCATAGCTCACCTATTGTTTCCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122908283 70 - 135778131 GTTCAAGGGTGCTGGGCCTTTTGATCTCCAACAGGGGCCCAAGGTTACCATAGCTCACCTATTGTTTCCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2020341 70 + 2427316 GTTCAAGGGTGCTGGGCCTTTTGATCTCCAACAGGGGCCCAAGGTTACCATAGCTCACCTATTGTTTCCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315607 70 + 1448899 GTTCAAGGGTGCTGGGCCTTTTGATCTCCAACAGGGGCCCAAGGTTACCATAGCTCACCTATTGTTTCCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025673 70 - 190850796 GTTCAAGGGTGCTGGGCCTTTTGATCTCCAACAGGGACCTCAGGTTACGATGGCTCACCTATTATTCCCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185894 70 - 15139346 GTTCAAGGGTGCTGGGCCTTTTGATCTCCAACAGGGGCCCAAGGTTACGATGGCTCACCTATTGTTCCCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971909 70 - 7304997 GTTCAAGGGTGATGGGCCTTTTGATCTCCAACAGGGGCCCAAGGTTACAATGGCTCACCTATTGTTCCCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387611 70 - 11631747 GTTCAAGGGTGCTGGGCCTTTTGATCTCCAACAGGGGCCCAAGATTACGATGGCTCACCTATTGTTCCCA i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76420740 53 + 151834684 TCTCCGGAGCACAG--------ACTCTGTAACACTGGC------TTAGGATGGCTGACAGACTGT---CA i mm10.chr5 I 3 I 2 s canFam3.chr13 48009335 66 + 63241923 TTTCAAGGGTGTTAAACTCTTTGGTCTCCAACAGAGGCCCCCTGT----GTGACCCAGAGGTTGTTTCTG i canFam3.chr13 I 3 C 0 s dasNov3.JH568349 4098865 45 - 5279953 -------GGTTTTGGGGATTCTAGTCTCCAGCAGGGGCCCAAG------------------TTATTTCTC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1875682 65 + 4188776 I e micMur3.chrUn_NW_017968520v1 1788842 63 + 3286835 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=80750.000000 s hg38.chr4_KI270787v1_alt 69615 5 + 111943 ACCCA s panTro5.chr4 119634311 5 - 194502333 ACCCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047721 5 - 195804263 ACCCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478966 5 - 17550833 ACCCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352358 5 - 118206036 accca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561486 5 - 190429646 ACCCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730675 5 - 189454096 ACCCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13297175 5 + 26754465 ACCCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198728 5 - 5137665 ACCCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122908353 5 - 135778131 ACCCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2020411 5 + 2427316 ACCCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315677 5 + 1448899 ACCCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025743 5 - 190850796 ACCCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185964 5 - 15139346 ACCCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971979 5 - 7304997 ACCCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387681 5 - 11631747 ACCCA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1788905 5 + 3286835 ACCCA i micMur3.chrUn_NW_017968520v1 I 63 C 0 s mm10.chr5 76420795 5 + 151834684 ATGCA i mm10.chr5 I 2 C 0 s canFam3.chr13 48009401 5 + 63241923 ACCCA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4098910 5 - 5279953 ACCCT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1875682 65 + 4188776 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=2740269.000000 s hg38.chr4_KI270787v1_alt 69620 203 + 111943 GCTGTCAACCCAGCTCTCTGTTTCTGCCACAGTGGTGGGTAAATTCCCCTCGCCATAGTCATCACAGT--CACAGCATCCTTCCCTCCTAGAAGAGTCGAAATGCAGACAGTAGTAGTTTGTCAGCTGAGTCTCTCTGTTCCTTCCTGGATGACTGCCGCCATCCTGAAGCTCCAGGTACTGTTCTGCACTCCCTAAGGG-TGTAG s panTro5.chr4 119634316 203 - 194502333 GCTGTCAACGCAGCTCTCTGTTTCTGCCACAGTGGTGGGTAAATTCCCCTCGCCATAGTCATCACAGT--CACAGCATCCTTCCCTCCTAGAAGAGTCGAAATGCAGACAGTAGTAGTTTGTCAGCTGAGTCTCTCTGTTCCTTCCTGGATGACTGCCGCCATCCTGAAGCTCCAGGTGCTGTTCTGCACTCCCTAAGGG-TGTAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047726 203 - 195804263 GCTGTCAACCCAGCTCTCTGTTTCTGCCACAGTGGTGGGTAAATTCCCCTCGCCATAGTCATCACAGT--CACAGCATCCTTCCCTCCTAGAAGAGTCGAAATGCAGACAGTAGTAGTTTGTCAGCTGAGTCTCTCTGTTCCTTCCTGGATGACTGCCGCCATCCTGAAGCTCCAGGTGCTGTTCTGCACTCCCTAAGGG-TGTAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4478971 203 - 17550833 GCTGTCAACCCAGCTCTCTGTTTCTGCCACAGTGGTGGGTAAATTCCTCTCACCATAGTCATCACAGT--CACAGCACCCTTCCCTCCTAGAAGAGTCGAAATGCAGACAGTAGTAGTTTGTCAGCTGAGTCTCTCTATTCCTTCCTGGATGACTGCCACCATCCTGAAGCGCCAGGTGCTGTTCTGCACTCCCTAAGGG-TGTAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352363 203 - 118206036 gctgtcaacccagctgtcTGTTTCTGCCACAGTGGTGGGTAAATTCCTCTCACCATAGTCATCATAGT--CACAGCACCCTTCCCTCCTAGAAGAGTCGAAATGCAGACAGTAGTAGTTTGTCAGCTGAGTCTGTCTGTTCCTTCCTGGATGACTGCCGCCATCCTGAAGCTCCAGGTGCTGTTCTGCACTCCCTAAGGG-TGTGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561491 203 - 190429646 GCTGTCCACCCAGCTCTCTGCTTCTACCACAGTGGTGGGTAAATTCCTCTCGCCATAGTCATCATAGT--CACAGCACCCTTCCCTCCTAGAAGAGTCGAAATGCAGACAATAGTAGTTTGTCAGCGGAGTCTCTCTGTTCCTTCCTGGATGACTGCTGCCATCCTGAAGCTCCAGGTGCTGTGCTGCACTCCCTAAGGG-TGTGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730680 203 - 189454096 GCTGTCCACCCAGCTCTCTGCTTCTACCACAGTGGTGGGTAAATTCCTCTCGCCATAGTCATCATAGT--CACAGCACCCTTCCCTCCTAGAAGAGTCGAAATGCAGACAATAGTAGTTTGTCAGCGGAGTCTCTCTGTTCCTTCCTGGATGACTGCTGCCATCCTGAAGCTCCAGGTGCTGTGCTGCACTCCCTAAGGG-TGTGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13297180 203 + 26754465 GCTGTCCACCCAGCTCTCTGCTTCTACCACAGTGGTGGGTAAATTCCTCTCGCCATAGTCATCATAGT--CACAGCACCCTTCCCTCCTAGAAGAGTCGAAATGCAGACAATAGTAGTTTGTCAGCGGAGTCTCTCTGTTCCTTCCTGGATGACTGCTGCCATCCTGAAGCTCCAGGTGCTGTGCTGCACTCCCTAAGGG-TGTGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198733 203 - 5137665 GCTGTCAACCCAGCTCTCTGCTTCTACCACAGTGGTGGGTAAATTCCTCTCGCCATAGTCATCATAGT--CATAGCACCCTTCCCTCCTAGAAGAGTCGAAATGCAGACAGTAGTAGTTTGTCAGCTGAGTCTCTCTGTTCCTTCCTGGATGACTGCTGCCATCCTGAAGCTCCAGGTGCTGTGCTGCACTCCCTAAGGG-TGTGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122908358 203 - 135778131 GCTGTCAACCCAGCTCTCTGCTTCTACCACAGTGGTGGGTAAATTCCTCTCGCCACAGTCATCATAGT--CACAGCACCCTTCCCTCCTAGAAGAGTCGAAATGCAGACAGTAGTAGTTTGTCAGCTGAGTCTCTCTGTTCCTTCCTGGATGACTGCTGCCATCCTGAAGCTCCAGGTGCTGTGCTGCACTCCCTAAGGG-TGTGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2020416 203 + 2427316 GCTGTCAACCCAGCTCTCTGCTTCTACCACAGTGGTGGGTAAATTCCTCTCGCCATAGTCGTCATAGT--CATAGCACCCTTCCCTCCTAGAAGAGTCGAAATGCAGACAGTAGTAGTTTGTCAGCTGAGTCTCTCTGTTCCTTCCTGGATGACTGCTGCCATCCTGAAGCTCCAGGTGCTGTGCTGCACTCCCTAAGGG-TGTGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315682 203 + 1448899 GCTGTCAACCCAGCTCTCTGTTTCTACCACAGTGGTGGGTAAATTCCTCTCGCCATAGTCATCATAGT--CACAGCACCCTTCCCTCCTAGAAAAGTCGAAATGTAGACAGTAGTAGTTTGTCAGCTGAGTCTCTCTGTTCCTTCCTGGATGACTGCTGCCATCCTGAAGCTCCAGGTGCTGTGCTGCACTCCCTAAGGG-TGTGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025748 185 - 190850796 GCTGTCAACCCAGCTTGCTGTTTCTGCCACAGTGGTGGGTAAATTCCTCTCACCATAGTCATCATAGT--CACAGCATCCTTCCCTCCTAGAGCAGTTGAAATGCAGACGGTAGCACTTTGTAAGCTGAGTCTCTCTGTTTCTTCCTGGGTGACTGCCACCATCCTGAA---------GCTGTGATGCACTCCC--AG-------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8185969 196 - 15139346 GCTGTCAACCCAGCTTGCTGTTTCTACTACAGTGGTGGGTAAATTCCTCTCACCATAGTCATCATAGT--CACAGCATCCTTCCCTCCCAGAGCAGTTGAAATGCAGGTGGTAGCACTTTATCAGCTGATTCTCTCTGTTCCTTCCTGGATGACTGCCACCATCCTGAAGCACCAGGTGCTGTGCTGCACTCCCTAAG-------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6971984 187 - 7304997 GCTGTCAAACCAGCTGGCTGTTTCTGCCACAGTGGTGGGTAAATTCCT---------GTCACCATAGT--CACAGCATCCTTCCCTCCTAGAGCACTTGAAATGCAGACGGTAGCACTTTGTCATCTGAGTCTCTCTGTTCCTTCCTGGATGACTGCCACCATCCCGAAGCACCAGGTGCTGTGCTACACTCCCTAAG-------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387686 196 - 11631747 GCTGTCAACCCAGCTTGCTGTTTCTGCCACGGTGGTGGGTAAATTCTTCTCACCATAGTCATCATAGT--CACAGCATCCTTCCCTCTTAGAGCAGTTGAAATGCAGACGGTAGCAGTTTGTCAGCTGAGTCTCTCTGTTCATTCCTGGATGACTGCCACCATCCTGAAGCACCAGGTGCTGTGCTGCACTCCCTAAG-------- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1788910 203 + 3286835 GCTGTCAACCTGGCTCTCTGCTTCTGCCACAGTTGTAGGTAAATTCTTCTCACCATAGTCACCATCGT--CACAGCACCTTTCCCTTCTAGAGTGGTTGAAATGCAGACAGTAGCAGTTTGTAGACTGAGCCTCTCTGTTCCTTCCTGGGTTACTGCCTCCATCCTGGAGTTCCAGGTGCTGTGCTGCACTCCCTGGGGG-TGTAG i micMur3.chrUn_NW_017968520v1 C 0 I 726 s proCoq1.NW_012140747v1 1875747 194 + 4188776 GCTGTCAACCTGGCTCTCTGCTTCTGCCACAGTTGTAGGTAAATTGCTCTCATGATA---------GT--CACAGCGCCCTTCCCTCCTAGAGTGGTCGAAATGCAGACAGTAGCAGTTTGTAGACTGAGTCCCTCTGTTCCTTCCTGGGTTACTGCCTCCATCCTGGAGCTCCAGGTGCTGTGCTGCACTCCCTGGGGA-TGTAG i proCoq1.NW_012140747v1 I 65 C 0 s mm10.chr5 76420800 196 + 151834684 GCTGTCAACCCAGATCTCTGCTTCTGCCACA----TATTGAAATCCACCCCA----AGTCACCATGCTCGCATAGCACCTTTCCACCCTAAAGCTGAGACTATGTGCTCAGAGGCAATCTATAGACTGAGCACCTCTGCTCCCTGCTGAGTTTTTACAGCT-TCCTAGAG-TCCGTGTGCTGAGATGCACTCCGTGGGAACCGCAG i mm10.chr5 C 0 C 0 s canFam3.chr13 48009406 190 + 63241923 GATGTTAATAT-GCTCACTGCTTCTGCCACAGTCGTAGATATATTCCTCACTTC-TGGTCACCACAGT--CACAAAACCTTTCCTTCCTCCAGTGGCCGAAATGCAGAAAGTAGCAGCTTGTAGACTGAGTCCCTTTATTCC-TACTGGGCTGCTTTCACAATCCTGGAGCTGCAATTATTACACTGCATTCCCT----------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4098915 172 - 5279953 GCTGCCAACCCAGCTCACTGCTTCTGCCTCA----------------TCTC----TGGTCCCCGGGGC--CACAGCCCCTTTCCCTCCTAGAGCAGCCAAAATGCAGAGACAGACAGGTTGTAGCCTGAGTGCCTTTGTTTCCTTCTGGGTTGCTGCTGCCATCCGGGAGCTCCAGGTGCTGCACTGAACTCCC------------ i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8620235 1867 + 8790067 I a score=749467.000000 s hg38.chr4_KI270787v1_alt 69823 70 + 111943 TAAAAGGAGTCCACAGCACTAGAGTGGGTCC-CAGAGCCTCTTACCCGGACCCTCCACCTGTCTGCTCTAg s panTro5.chr4 119634519 70 - 194502333 TAAAAGGAGTCCACAGCACTAGAGTGGGTCC-CAGAGCCTCTTACCCGGACCCTCCACCTGTCTGCTCTAg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047929 70 - 195804263 TAAAAGGAGTCCACAGCACTAGAGTGGGTCC-CAGAGCCTCTTACCCGGACCCTCCACCTGTCTGCTCTAg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4479174 70 - 17550833 TAAAAGGAGTCCACAGCACTAGAGTGGGTCC-CAGAGCCTCTTACCCGGACCCTCCACCTGTCTGCTCTAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352566 70 - 118206036 TAAAAGGAGTCCGGAGCACTAGAGTGGGTCC-CAGAGCCTCTTACCCAGACCTTCCACCTGTCTGCTCTAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561694 70 - 190429646 TAAGAGGAGTCCACAGCACTAGAGTGGGTCC-CAGAGCCTCTTGCTCACACCCTCCACCTATCTGCTCTAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730883 70 - 189454096 TAAGAGGAGTCCACAGCACTAGAGTGGGTCC-CAGAGCCTCTTGCTCACACCCTCCACCTATCTGCTCTAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13297383 70 + 26754465 TAAGAGGAGTCCACAGCACTAGAGTGGGTCC-CAGAGCCTCTTGCTCACACCCTCCACCTATCTGCTCTAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4198936 70 - 5137665 TAAGAGGAGTCCACAGCACTAGAGTGGGTCC-CAGAGCCCCTTGCTCAGACCCTCCACCTGTCTGCTCTAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122908561 70 - 135778131 TAAGAGGAGTCCACAGCACTAGAGTGGGTCC-CAGAGCCTCTTGCTCAGACCCTCCACCTATCTGCTCAAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2020619 70 + 2427316 TAAGAGGAGTCCACAGCACTAGAGTGGGTCC-CAGAGCCTCTTGCTCAGACCCTCCACCTATCTGCTCTAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315885 70 + 1448899 TAAGAGGAGTCCACAGCACTAGAGTGGGTCC-CAGAGCCTCTTGCTCAGACCCTCCACCTATCTGCTCTAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025933 65 - 190850796 -----GGAGTCCATAACACTACAGTAGATCC-CAGAGTCTCTTGCCTGGACCCTCCACCTGTCTGCTCTAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8186165 65 - 15139346 -----GGAGTCCATAACACTACAGTGGGTCC-CAGAGCCTCTTGCCTGGATCCTCCACCTGTCTGCTCTAg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6972171 65 - 7304997 -----GGAGTCCATAACACTATAGTGGGTCC-CAGAGCCTCTTGCTTGGATCCTCCACCTGTCTGCTCAAg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387882 65 - 11631747 -----GGAGTCCATAACACTACAGTGGGTCC-CAGAGCCTCTTGCCTGGACCCTCCACCTGTCTGCTCTAG i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1875941 44 + 4188776 -------------------CAAGTGGGGTCC-CAGTGCCTCTCCCCGGGATCCC-------TCTGCTCTAg i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76420996 62 + 151834684 TAAGAGAGGCCCTC-GTGTTGTAGTGGGTCC-TAGCATCTCC-------ATTCTTCACCCCTGCACCTTAG i mm10.chr5 C 0 C 0 s canFam3.chr13 48009596 62 + 63241923 --------GTTCACAGGGCTGTAGCAGGTCC-CAGTGCTTCCTACCTGGACTCTTTGCCCCTCTGCTCTgg i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4099087 42 - 5279953 ----AGGGGTCTGT----CGAGAGAGGGTCTGCAGTGCCT---------------------TCCCCCCTAg i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1789113 726 + 3286835 I e otoGar3.GL873602 8620235 1867 + 8790067 I a score=2506067.000000 s hg38.chr4_KI270787v1_alt 69893 195 + 111943 gcagtggagcacagtgagtaagcacacaggtgcttac-tcagacagacctcagctcaaacctgactccatcacttgccagttgcctgtctttcaacaactgtttgctcttgcattaactcctttttaaagtggaaatgagaataatagta-gttactg-cccagg---cttattgtaaggtttaaatgagttctgatggta s panTro5.chr4 119634589 195 - 194502333 gcagtggagcacagtgagtaagcacacaggtgcttac-tcagacagacctcagctcaaacctgactccatcacttgccagttgcctgtctttcaacaactgtttgctcttgcattaactcctttttaaagtggaaatgagaataatagta-gttactg-cccagg---cttattgtaaggtttaaatgagttctgatggta i panTro5.chr4 C 0 C 0 s panPan2.chr4 121047999 195 - 195804263 gcagtggagcacagtgagtaagcacacaggtgcttac-tcagacagacctcagctcaaacctgactccatcacttgccagttgcctgtctttcaacaactgtttgctcttgcattaactcctttttaaagtggaaatgagaataatagta-gttactg-cccagg---cttattgtaaggtttaaatgagttctgatggta i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4479244 195 - 17550833 Gcagtggagcacagtgagtaagcacacaggtgcttac-tcagacagacctcagctcaaacctgactccatcacttgccagttgcctgtctttcaacaactgtttgctcttgcattaactcctttttaaagtggaaatgataataatagta-gttactg-cccagg---cttattgtaaggtttaaatgagttctgatggta i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352636 195 - 118206036 Gcagtggagcacagcgagtaagcacacaggtgcttac-tcagacagacctcagctcaaacctgactccatcacttgccaggtgcctgtcttccaacaactctttgctcttccattaactcctttttaaagtggaaacgataataatagta-gttacag-cccagg---cttattgtaaggtttaaatgagttctgatggta i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561764 196 - 190429646 Gcagtggagcacagtgggtaagcacacaggtgcagccatcagacagacctcagctcaaaccggactccatcacttgccaagtgcctgtctttcaacaactctttactcttacattgactcctttttaaagtggaaatgataataatagta-gttacct-cccagg---cttattgtaaggtttaaatgagttCTGGTGGTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110730953 196 - 189454096 Gcagtggagcacagtgggtaagcacacaggtgcagccatcagacagacctcagctcaaaccggactccatcacttgccaagtgcctgtctttcaacaactctttactcttacattgactcctttttaaagtggaaatgataataatagta-gttacct-cccagg---cttattgtaaggtttaaatgagttCTGGTGGTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13297453 196 + 26754465 Gcagtggagcacagtgggtaagcacacaggtgcagccatcagacagacctcagctcaaaccggactccatcacttgccaagtgcctgtctttcaacaactctttactcttacattgactcctttttaaagtggaaatgataataatagta-gttacct-cccagg---cttattgtaaggtttaaatgagttctggtggta i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4199006 192 - 5137665 Gcagtggagcacagtgggtaagcacacaggtgcagccatcagacagacctcagctcaaaccggactccatcacttgccaagtgc----ctttcaacaactctttactcttacattgactcctttttaaagtggaaatgataataatagta-gttacct-cccagg---cttattgtaaggtttaaatgagttctggtggta i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122908631 196 - 135778131 Gcagtggagcacagtgggtaagcacacaggtgcagccatcagacagacctcagctcaaaccggactccatcacttgccaagtgcctgtctttcaacaactcttcgctcttacattgactcctttgtaaagtggaaatgataataatagta-gttaccg-ccgagg---cttattgtaaggtttaaatgagttctggtggta i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2020689 195 + 2427316 Gcagtggagcacagtgggtaagcacacaggtgcagcc-tcagacagacctcagctcaaaccggactccatcacttgccaagtgcctgtctttcaacaactctttactcttacattgactcctttttaaagtggaaatgataataatagta-gttaccg-cccagg---cttattgtaaggtttaaatgagttctggtggta i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1315955 196 + 1448899 Gcagtggagcacagtgggtaagcacacagttgcagccatcagacagacctcagctcaaacgggactccatcacttgccaggtgcctgtctttcaacaactctttactcttacattgactcctttttaaagtggaaatgataataatagta-gttaccg-cccagg---cttattgtaaggtttaaatgagttctggtggta i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53025998 196 - 190850796 Gcagtggagcacagtgggtaagcatgcaggtgcagccatcagatacacctgagctccaacctgactccatcacttgccaggtgctcgtctttcaacaactctttactcttccattaacgcctttttagagtggaaatgataataatagta-gttactt-cccagg---cttattttaagggttaagtgagttctggtggta i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8186230 193 - 15139346 gcagtggtgcacagtgggtaagcacacaggtgcagccatcagatacacctgagctccaacctgactccatcacttgccaggtgctcgtctttcaacaactcatcactcttccattaacccctttttagagtggaaatgatagtaa---ta-gttactt-cccagg---cttatgttaagggttaagtgagttctggtggta i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6972236 196 - 7304997 gcagtggagcacagtgggtaggcacgcaggtgtagccatcacatacacctcagctccaacctgactccatcacttgccaggtggtcatctttcaataactctttactcttccattaaccgctttttagagtggaaatgataataatagta-gttactt-cccagc---cttattttaagggttaagtgagttctggtggta i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9387947 196 - 11631747 Gcagtggagcacagtgggtaagcacgcaggtgcggccatcagatactcctgagctccaacctgactccatcacttgccaggtgctcgtctttcaacaactctttactcttccattaacccctttttagagtggaaatgataataatagta-gttactg-cccagg---cttattttaagggttaagtgagttctggtggta i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1875985 193 + 4188776 gcagtggagcacagtgtgtaagcacacaggtgctgcccgcagacaggcccgagctcaaatctacctccatcgcttgccaggtgactgtccttcaacaactct---ctcttccattaactcatttttaaagtggaaatgataagaatagca-cctactt-cccagg---gttgttgcaagggtcaaatgagttctggtggta i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8622102 191 + 8790067 gcagtagagcagcaggc---agcacacaggtgctgccatcaaagaggcctgagctcaaatcctcctccatcacttgccaggtgac-gtccttcaacaactcttcacccttccattaactca-agttaaagtggaaatactaataacagtgccctgctg-cccagg---actgttgc-agcattgaaggccttctggtggta i otoGar3.GL873602 I 1867 C 0 s mm10.chr5 76421058 180 + 151834684 ACAGTACAGCTCAGTGACTGGACACCCTGGTGTCACCATTAGACAAATCTACACTGTAA-------CCATCACTGGCCTGGCGACTCCCTTTCAGTAACCCACCACCCTC-CTTTAGTTCACTACAGAAACGGAAATGATAAGGACTGCC-CTGGCTG-CGCATG---GTGACAGTGATGAACAGA--------GATGGTG i mm10.chr5 C 0 I 332 s canFam3.chr13 48009658 193 + 63241923 gcagtgtggtacagtggtgaagcacacaggtgccacc-acagacaggcctgagcaaaaatctgactgtatcacttgtcagtcagatgtcctttgaaaactct--gcccctccactacctcatctttaaaatggaaatgata--aatagta-cttatta-ccaagagttattattgtaaaagtcaaatgggttcaggt-ata i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4099129 188 - 5279953 gcagaggggc-----ggtgaagcccacgggagctaccatcagaccaaccggagctcaaatctgactcgatcctttgccagttgact-tccttggacaactctctgttcctccatttactcattttttaaatggacatgag---gatagta-cctactgccccaag---gttgctgtaagagttaaatgagttcatgtagta i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1789113 726 + 3286835 I a score=145847.000000 s hg38.chr4_KI270787v1_alt 70088 9 + 111943 aagcattta s panTro5.chr4 119634784 9 - 194502333 aagcattta i panTro5.chr4 C 0 C 0 s panPan2.chr4 121048194 9 - 195804263 aagcattta i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4479439 9 - 17550833 aagcattta i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352831 9 - 118206036 aagcattta i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561960 9 - 190429646 AAGTATTTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110731149 9 - 189454096 AAGTATTTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13297649 9 + 26754465 aagcattta i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4199198 9 - 5137665 aagcattta i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122908827 9 - 135778131 aagcattta i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2020884 9 + 2427316 aagcattta i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1316151 9 + 1448899 aagcattta i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53026194 9 - 190850796 aagcattta i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8186423 9 - 15139346 aagcattta i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6972432 9 - 7304997 aagcattta i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9388143 9 - 11631747 aagcattta i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1876178 9 + 4188776 aagcattta i proCoq1.NW_012140747v1 C 0 I 158 s otoGar3.GL873602 8622293 9 + 8790067 aggagttta i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48009851 9 + 63241923 aagcattta i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4099317 9 - 5279953 aagcattta i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1789113 726 + 3286835 I e mm10.chr5 76421238 332 + 151834684 I a score=27200.000000 s hg38.chr4_KI270787v1_alt 70097 2 + 111943 CC s panTro5.chr4 119634793 2 - 194502333 CC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121048203 2 - 195804263 CC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4479448 2 - 17550833 CC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352840 2 - 118206036 CC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561969 2 - 190429646 CC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110731158 2 - 189454096 CC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13297658 2 + 26754465 CC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4199207 2 - 5137665 CC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122908836 2 - 135778131 CC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2020893 2 + 2427316 CC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1316160 2 + 1448899 CC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53026203 2 - 190850796 CC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8186432 2 - 15139346 CC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6972441 2 - 7304997 cc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9388152 2 - 11631747 CC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8622302 2 + 8790067 cc i otoGar3.GL873602 C 0 C 0 e proCoq1.NW_012140747v1 1876187 158 + 4188776 I e micMur3.chrUn_NW_017968520v1 1789113 726 + 3286835 I e mm10.chr5 76421238 332 + 151834684 I e dasNov3.JH568349 4099326 0 - 5279953 C e canFam3.chr13 48009860 0 + 63241923 C a score=1461230.000000 s hg38.chr4_KI270787v1_alt 70099 148 + 111943 CGCCACTGTGGCAGAAACA------------GACAGCTGGGTTGGGAACAATAGGTGAGCCATCGTAACCTTGGGCCCCTGTTGGAGACCAAAGGGCCCAATA-CCTCGAAAGCCC----TTTTGTCATCTCTGCTTCC-TCCC-GGGGGGAGTGAAAGCTAGTGTC s panTro5.chr4 119634795 148 - 194502333 CGCCACTGCGGCAGAAACA------------GACAGCTGGGTTGGGAACAATAGGTGAGCCATCGTAACCTTGGGCCCCTGTTGGAGACCAAAGGGCCCAATA-CCTCGAAAGCCC----TTTTGTCATCTCTGCTTCC-TCCC-GGGGGGAGTGAAAGCTAGTGTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121048205 148 - 195804263 CGCCACTGCGGCAGAAACA------------GACAGCTGGGTTGGGAACAATAGGTGAGCCATCGTAACCTTGGGCCCCTGTTGGAGACCAAAGGGCCCAATA-CCTCGAAAGCCC----TTTTGTCATCTCTGCTTCC-TCCC-GGGGGGAGTGAAAGCTAGTGTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4479450 160 - 17550833 CGCCGCTGTGGCAGAAACAgacagctgggttgacagctgggttgGGAACAATAGGTGAGCCATCGTAACCTTGGGCCCCTGTTGGAGACCAAAGGGCCCAACACCCTCGAAAGCCC----TTTTGTCATCTCTGCTTCC-TCCC--GGGGGAGTGAAAGCTAGTGTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352842 146 - 118206036 CGCCACTGTGGCAGAAACAGACAGCTGGGTTGACGGCTGGGTTGGGAACAATAGGTGAGCCATCATAACCTTGGGCCCTTGTTGGAGAC---------------CCTCGAAAGCCC----TTTTATCGTCTCTGCTTCC-TCCT-GGGGGGAGTGAAAGCTAGCGTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111561971 162 - 190429646 CGCCACTGTGGCAGAAACAGACAGCTGGGTTGACAGTTGGGTTGGGAACAATAGGTGAGCCATCTTAACCTTGGGCCTCTGTTGGAGACCAAAGGGCCCAATACCCTCGAAAGCCC----TTTTATCATCTCTGCTTCCTTCCC-GGGGGGAGTGAAAGCTAGCGTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110731160 162 - 189454096 CGCCACTGTGGCAGAAACAGACAGCTGGGTTGACAGTTGGGTTGGGAACAATAGGTGAGCCATCTTAACCTTGGGCCTCTGTTGGAGACCAAAGGGCCCAATACCCTCGAAAGCCC----TTTTATCATCTCTGCTTCCTTCCC-GGGGGGAGTGAAAGCTAGCGTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13297660 162 + 26754465 CGCCACTGTGGCAGAAACAGACAGCTGGGTTGACAGTTGGGTTGGGAACAATAGGTGAGCCATCTTAGCCTTGGGCCTCTGTTGGAGACCAAAGGGCCCAATACCCTCGAAAGCCC----TTTTATCATCTCTGCTTCCTTCCC-GGGGGGAGTGAAAGCTAGCATC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4199209 162 - 5137665 CGCCACTGTGGCAGAAACAGACAGCTGGGTTGACAGTTGGGTTGGGAACAATAGGTGAGCCATCTTAACCTTGGGCCTCTGTTGGAGACCAAAGGGCCCAATACCCTCGAAAGCCC----TTTTATCATCTCTGCTTCCTTCCC-GGGGGGAGTGAAAGCTAGCGTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122908838 163 - 135778131 CGCCACTGTGGCAGAAACAGACAGCTGGGTTGACAGTTGGGTTGGGAACAATAGGTGAGCCATCTTAACTTTGGGCCTCTGTTGGAGACCAAAGGGCCCAATACCCTCGAAAGCCC----TTTTATCATCTCTGCTTCCTTCCCGGGGGGGGGTGAAAGCTAGCGTC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2020895 162 + 2427316 CGCCACTGTGGCAGAAACAGACAGCTGGGTTGACAGTTGGGTTGGGAACAATAGGTGAGCCATCTTAACTTTGGGCCTCTGTTGGAGACCAAAGGGCCCAATACCCTCGAAAGCCC----TTTTATCATCTCTGCTTCCTTCCC-GGGGGGAGTGAAAGCTAGCGTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1316162 162 + 1448899 CGCCACTGCGGCAGAAACAgacagctgggttgacagctgggttgGGAACAATAGGTGAGCCATCTTAACCTTGGACTTCTGTTGGAGACCAAAGGGCCCAATACCCTCAAAAGCCC----TTTTATCATCTCTGCTTCCTTCCC-AGGGGGAGTGAAAGCTAGCGTC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53026205 164 - 190850796 CACCACTGCGGCAGAAAC--AAAGCTGGGTTGACAGCTGAGTTGGGAACAACATGTGAGCCGTTGTAACCTTGGGCCCCTGTTGGAGACCAAAGGACCCAATACCCTCGAAAGCCCTAAGTTTCATCATTTCTGCTTCCTCCCA-GGGGGGAGTGAGAGCTAGCGGC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8186434 166 - 15139346 CACCACTGCAGCAGAAACAGAAAGCTGGGTTGACAGCTCGATTGGGAACAACAGGTGAGCCATCGTAACCTTGGGCCCCTGTTGGAGACCAAAGGACCCAATACCCTCGAAAGCCCTAAGTTTCATCATTTCTGCTTCCTCCCA-GTGGGGAGTGAGAGCTAGCGGC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6972443 166 - 7304997 caccactgtggcagaaacagaaagcTGAGTTGACAGCTGGGTTGGGAAGAACATGTGAGCCATCATAACCTTGGGCCTCTGTTGGAGACCAAAGGACCCAATACCCTCGAAAGCCCTAAGTTTCATCATTTCTGCTTCCTCCCA-GGGGGGAGTGAGAGCTAGCGAC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9388154 166 - 11631747 CACCACTGCAGCAGAAACAGAAGACTGAGTTGACAGCTGGGTTGGCAACAACATGTGAGCCATCGTAACCTTGGGTCCCTGTTGGAAACCAAAGGACACAATACCCTCGAAAGCCCTAAGTTTCATCATTTCTGCTTCCTCCCA-GGGGGTAGTGAGAGCTAGCGAC i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1876187 158 + 4188776 I e micMur3.chrUn_NW_017968520v1 1789113 726 + 3286835 I e mm10.chr5 76421238 332 + 151834684 I e dasNov3.JH568349 4099326 0 - 5279953 C e otoGar3.GL873602 8622304 0 + 8790067 C e canFam3.chr13 48009860 0 + 63241923 C a score=18576.000000 s hg38.chr4_KI270787v1_alt 70247 2 + 111943 TC s panTro5.chr4 119634943 2 - 194502333 TC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121048353 2 - 195804263 TC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4479610 2 - 17550833 TC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352988 2 - 118206036 TC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111562133 2 - 190429646 TC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110731322 2 - 189454096 TC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13297822 2 + 26754465 TC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4199371 2 - 5137665 TC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122909001 2 - 135778131 TC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2021057 2 + 2427316 TC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1316324 2 + 1448899 TT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53026369 2 - 190850796 TT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8186600 2 - 15139346 TT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6972609 2 - 7304997 TG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9388320 2 - 11631747 TT i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48009860 2 + 63241923 tc i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4099326 2 - 5279953 tc i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1876187 158 + 4188776 I e micMur3.chrUn_NW_017968520v1 1789113 726 + 3286835 I e mm10.chr5 76421238 332 + 151834684 I e otoGar3.GL873602 8622304 0 + 8790067 C a score=1692562.000000 s hg38.chr4_KI270787v1_alt 70249 151 + 111943 ATGATGCCTGACCTGCAGAAA--------TCACCCAATTATGCTGACTGTCACTA---TGTTAGTTGTCATG-ACAATTATAATGTGCTTCTCAGCTGCGTAGAAGAC---AATACACCTCCCC-CTCCTGCC-TTGGGCCAGGGCTTCCAGGACCCTACTGTAAAGC s panTro5.chr4 119634945 151 - 194502333 ATGATGCCTGACCTGCAGAAA--------TCACCCAATTATGCTGACTGTCACTA---TGTTAGTTGTCATG-ACAATTATAATGTGCTTCTCAGCTGCGTAGAAGAC---CATACACCTCCCC-CTCCTGCC-TTGGGCCAGGGCTTCCAGGACCCTACTGTAAAGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121048355 151 - 195804263 ATGATGCCTGACCTGCAGAAA--------TCACCCAATTATGCTGACTGTCACTA---TGTTAGTTGTCATG-ACAATTATAATGTGCTTCTCAGCTGCGTAGAAGAC---CATACACCTCCCC-CTCCTGCC-TTGGGCCAGGGCTTCCAGGACCCTACTGTAAAGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4479612 151 - 17550833 ATGATGCCTGACCTGTAGAAA--------TCACCCAATTATGCTGACTGTCACTA---TGTTAGTTGTCATG-ACAATTATAATGTGCTTCTCAGCTGCGTAGAAGAC---CATACACCTCCCC-CTCCTGCC-TTGGGCCAGTGCTTCCAGGACCCTATTGTAAAGC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69352990 151 - 118206036 ATGATGCCTGACCTGCAGAAA--------TCACCCAATTATGCTGACTGTCACTA---TGTTAGTTGTCATG-ACAATTATAATGTGCTTCTCACCTGCGTAGAAGAC---CATACACCTCCCC-ATCCTGCC-TTGGGCCAGGGCCTCCAGGACCCTACTGTAAAGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111562135 148 - 190429646 ACGATGCCTGACCTGCAGAAA--------TCACCCAATTATGCTGACTGTCAC-----TGTTAGTTGTCATG-ACAACTATAATGTGCTTCTCAGCTGCATAGAAGAC---CATACACTGCCCC--TCCTGCC-TTGGGCCTGGGTCTCCAGGACCTTACTGTAAAGC i rheMac8.chr5 C 0 I 7 s macFas5.chr5 110731324 148 - 189454096 ACGATGCCTGACCTGCAGAAA--------TCACCCAATTATGCTGACTGTCAC-----TGTTAGTTGTCATG-ACAACTATAATGTGCTTCTCAGCTGCATAGAAGAC---CATACACTGCCCC--TCCTGCC-TTGGGCCTGGGTCTCCAGGACCCTACTGTAAAGC i macFas5.chr5 C 0 I 7 s macNem1.NW_012012466v1 13297824 148 + 26754465 ACGATGCCTGACCTGCAGAAA--------TCACCCAATTATGCTGACTGTCAC-----TGTTAGTTGTCATG-ACAATTATAATGTGCTTCTCAGCTGCATAGAAGAC---CATACACTGCCCC--TCCTGCC-TTGGGCCTGGGTCTCCAGGACCCTACTGTAAAGC i macNem1.NW_012012466v1 C 0 I 17 s cerAty1.NW_012001307v1 4199373 148 - 5137665 ACGATGCCTGACCTGCAGAAA--------TCACCCAATTATGCTGACTGTCAC-----TGTTAGTTGTCATG-ACAATTATAATGTGCTTCTCAGCTGCATAGAAGAC---CATACACTGCCCC--TCCTGCC-TTGGGCCTGGGTCTCCAGGACCCTACTGTAAAGC i cerAty1.NW_012001307v1 C 0 I 7 s chlSab2.chr7 122909003 148 - 135778131 CCGATGCCTGACCTGCAGAAA--------TCACCCAATTATGCTGACTGTCAC-----TGTCAGTTGTCATG-ACAATTATCATGTGCTTCTCAGCTGCATAGAAGAC---CATACACCGCCCC--TCCTGCC-TTGGGCCTGGGTCTCCAGGACCCTACTGTAAAGC i chlSab2.chr7 C 0 I 7 s manLeu1.NW_012104388v1 2021059 148 + 2427316 ACGATGCCTGACCTGCAGAAA--------TCACCCAATTATGCTGACTGTCAC-----TGTTAGTTGTCATA-ACAATTATAATGTGCTTCTCAGCTGCATAGAAGAC---CATACACCGCCCC--TCCTGCC-TTGGGCCTGGGTCTCCAGGACCCTACTGTAAAGC i manLeu1.NW_012104388v1 C 0 I 7 s colAng1.NW_012119221v1 1316326 150 + 1448899 ACGATGCCTGACCTGCAGAAA--------TCACCCAATTACGCTGACTGTCACTA---TGTTAGTTGTCATG-ACGATTATAATGTGCTTCTCAGCTGCATAGAAGAC---CATACACCGCCCC--TCCTGCC-TTGGGCCTGTGTCTCCAGGACCCTACTGTAAAGC i colAng1.NW_012119221v1 C 0 I 7 s calJac3.chr3 53026371 152 - 190850796 ATGATGCCTGACCTGCAGAAA--------TCACCCAATGATGCTGGCTGTCACTA---TGTCAGTTGTCATG-ACAATTATGATGTACTTCTCAGCTGCACAGAAGAC---CATACACCTCCCCACTCCTGCC-TTGGGCCTGGGCCTTCAGGACCCTACTGTAAAGC i calJac3.chr3 C 0 I 7 s saiBol1.JH378162 8186602 152 - 15139346 ATGATGCCTGACCTGCAGAAA--------TCACCCAATGATGCTGGCTGTCACTA---TGTTAGTTGTCATG-ACAATTATGATGTGCTTCTCAGCTGCACAGAAGAC---TATATACCTCCCCACTCCTGCC-TTGGGCCTGGGCCTTCAGGACCCTACTGTAAAGC i saiBol1.JH378162 C 0 I 7 s cebCap1.NW_016107439v1 6972611 152 - 7304997 ATGATGCCTGACCTGCAGAAA--------TCACCCAATGATGCCGGCTGTCACTA---TGTTAGTTGTCATG-ACAATTATGATGTGCTTCTCAGCTGCATAGAAGAC---CATACACCTCCCCACTCCTGCC-TTGGGCCTGGGCCTTGAGGACCCTACTGTATAGC i cebCap1.NW_016107439v1 C 0 I 6 s aotNan1.NW_018493494v1 9388322 152 - 11631747 ATGATGCCTGACCTGCAGAAA--------TCACCCAATGATGCTGGCTGTCACTA---TGTTAGTTGTCATG-ACAATTATGATGTGCTTCTCAGCTGCACAGAAGAC---CATACACCTCCCCACTCCTGCC-TCGGGCCTGGGCCTTCAGGACCCTACTCTAAAGC i aotNan1.NW_018493494v1 C 0 I 7 s otoGar3.GL873602 8622304 140 + 8790067 atggtgtctatcttgcagaaa----------gcTTGGTGATGCCAGCTGCTGCCATCCTGGTAGTCATCATG-ATGCTTAGCGTGTTCTTCTGAACTGTGCAGACGGC---CA----------C--TCCT-CA-GTGGGTCTGGGTCTCCAGGGCCCTACTGTAAAGC i otoGar3.GL873602 C 0 I 2 s canFam3.chr13 48009862 155 + 63241923 atattatctgacctgcagaaa--------gccctcaactatgctacctattatGA---TGTTAATTATGATT-GTGATGATGATGTGCTATTTAGCTGCGCAGGCcacacacacacacacacac-acacTGCTATTGGGCCAGGATTCACCAAGTACTGATATAAACC i canFam3.chr13 C 0 I 12 s dasNov3.JH568349 4099328 144 - 5279953 agaatgtctgacctgcagaaagcCCGAAAGCCCTCAAATACGGCAGCTGCCAT-----TGCTA--TGCCAAGTATGACTATGATGTGCGTCTCGGCTGGGCAGAAGGC---CA-------------CCTTCCC-TTGCGCCTGGATCCATGGGGCACTGCTGTAAGAC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1876187 158 + 4188776 I e micMur3.chrUn_NW_017968520v1 1789113 726 + 3286835 I e mm10.chr5 76421238 332 + 151834684 I a score=17249.000000 s hg38.chr4_KI270787v1_alt 70400 6 + 111943 TGTTAT s panTro5.chr4 119635096 6 - 194502333 CGTTAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121048506 6 - 195804263 CGTTAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4479763 6 - 17550833 CGTTAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69353141 6 - 118206036 CGTTAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111562290 6 - 190429646 TATTCC i rheMac8.chr5 I 7 C 0 s macFas5.chr5 110731479 6 - 189454096 TATTCC i macFas5.chr5 I 7 C 0 s cerAty1.NW_012001307v1 4199528 6 - 5137665 TATTCC i cerAty1.NW_012001307v1 I 7 C 0 s chlSab2.chr7 122909158 6 - 135778131 TATTCC i chlSab2.chr7 I 7 C 0 s manLeu1.NW_012104388v1 2021214 6 + 2427316 TATTCC i manLeu1.NW_012104388v1 I 7 C 0 s colAng1.NW_012119221v1 1316483 6 + 1448899 TATTCC i colAng1.NW_012119221v1 I 7 C 0 s calJac3.chr3 53026530 6 - 190850796 TATTCC i calJac3.chr3 I 7 C 0 s saiBol1.JH378162 8186761 6 - 15139346 TATTCC i saiBol1.JH378162 I 7 C 0 s cebCap1.NW_016107439v1 6972769 6 - 7304997 TATTCC i cebCap1.NW_016107439v1 I 6 C 0 s aotNan1.NW_018493494v1 9388481 6 - 11631747 TATTCC i aotNan1.NW_018493494v1 I 7 C 0 s otoGar3.GL873602 8622446 4 + 8790067 TCTT-- i otoGar3.GL873602 I 2 I 10 s canFam3.chr13 48010029 6 + 63241923 TTTGCC i canFam3.chr13 I 12 C 0 s dasNov3.JH568349 4099472 1 - 5279953 --T--- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1876187 158 + 4188776 I e micMur3.chrUn_NW_017968520v1 1789113 726 + 3286835 I e mm10.chr5 76421238 332 + 151834684 I e macNem1.NW_012012466v1 13297972 17 + 26754465 I a score=13923.000000 s hg38.chr4_KI270787v1_alt 70406 1 + 111943 A s panTro5.chr4 119635102 1 - 194502333 A i panTro5.chr4 C 0 C 0 s panPan2.chr4 121048512 1 - 195804263 A i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4479769 1 - 17550833 A i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69353147 1 - 118206036 A i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111562296 1 - 190429646 A i rheMac8.chr5 C 0 I 3 s macFas5.chr5 110731485 1 - 189454096 A i macFas5.chr5 C 0 I 3 s cerAty1.NW_012001307v1 4199534 1 - 5137665 A i cerAty1.NW_012001307v1 C 0 I 3 s chlSab2.chr7 122909164 1 - 135778131 A i chlSab2.chr7 C 0 I 3 s manLeu1.NW_012104388v1 2021220 1 + 2427316 A i manLeu1.NW_012104388v1 C 0 I 3 s colAng1.NW_012119221v1 1316489 1 + 1448899 A i colAng1.NW_012119221v1 C 0 I 3 s calJac3.chr3 53026536 1 - 190850796 A i calJac3.chr3 C 0 I 3 s saiBol1.JH378162 8186767 1 - 15139346 A i saiBol1.JH378162 C 0 I 3 s cebCap1.NW_016107439v1 6972775 1 - 7304997 A i cebCap1.NW_016107439v1 C 0 I 3 s aotNan1.NW_018493494v1 9388487 1 - 11631747 A i aotNan1.NW_018493494v1 C 0 I 3 s proCoq1.NW_012140747v1 1876345 1 + 4188776 A i proCoq1.NW_012140747v1 I 158 C 0 s otoGar3.GL873602 8622460 1 + 8790067 A i otoGar3.GL873602 I 10 C 0 s canFam3.chr13 48010035 1 + 63241923 A i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1789113 726 + 3286835 I e mm10.chr5 76421238 332 + 151834684 I e dasNov3.JH568349 4099473 0 - 5279953 C e macNem1.NW_012012466v1 13297972 17 + 26754465 I a score=1367805.000000 s hg38.chr4_KI270787v1_alt 70407 113 + 111943 GGAAACTGGCTCTTGCACTCTCCCCCTAACCCAGCAGAACAAGGAAGCCACATGCCTTCCCTCCAAGG-CCCCAGAAGTCTCTTGTTTTGTTCTCTCAGAAGCAAAAAGTACAA s panTro5.chr4 119635103 113 - 194502333 GGAAACTGGCTCTTGCACTCTCCCCCTAACCCAGCAGAACAAGGAAGCCACATGCCTTCCCTCCAAGG-CCCCAGAACTCTCTTGTTTTGTTCTCTCAGAAGCAAAAAGTACAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121048513 113 - 195804263 GGAAACTGGCTCTTGCACTCTCCCCCTAACCCAGCAGAACAAGGAAGCCACATGCCTTCCCTCCAAGG-CCCCAGAACTCTCTTGTTTTGTTCTCTCAGAAGCAAAAAGTACAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4479770 113 - 17550833 GGAAACTGGCTCTTGCACTCTCCCCCTAACCCAGCAGAACAAGGAAGCCACATGCCTTCCCTCCAAGG-CCCCAGAACTCTCTTGTTTTGTTCTCTCAGAAGCAAAAAGTACAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69353148 113 - 118206036 GGAAACTCGCTCTTGCAGTCTCCCCCTAACCCAGCAGAACAAGGAAGCCACATGCCTTCCCTCCAAGG-CCCCAGAACTCTCTTGTTTTGTTCTCTCAGAAGCAAGAAGTACAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111562300 113 - 190429646 GGAAACTGGCTCTTGCACTCTCCCGCTAACCCAGCAGAGCAAGGAAGCCACATGCCTTCCCTCCAAGG-CCCCAGAACTCTCTTGTTTTGTTCTCTCAGAAGCAAAAAGTACAA i rheMac8.chr5 I 3 C 0 s macFas5.chr5 110731489 113 - 189454096 GGAAACTGGCTCTTGCACTCTCCCGCTAACCCAGCAGAGCAAGGAAGCCACATGCCTTCCCTCCAAGG-CCCCAGAACTCTCTTGTTTTGTTCTCTCAGAAGCAAAAAGTACAA i macFas5.chr5 I 3 C 0 s macNem1.NW_012012466v1 13297989 113 + 26754465 GGAAACTGGCTCTTGCACTCTCCCGCTAACCCAGCAGAGCAAGGAAGCCACATGCCTTCCCTCCAAGG-CCCCAGAACTCTCTTGTTTTGTTCTCTCAGAAGCAAAAAGTACAA i macNem1.NW_012012466v1 I 17 C 0 s cerAty1.NW_012001307v1 4199538 113 - 5137665 GGAAACTGGCTCTTGCACTCTCCCGCTAACCCAGCAGAGCAAGGAAGCCACATGCCTTCCCTCCAAGG-CCCCAGAACTCTCTTGTTTTGTTCTCTCAGAAGCAAAAAGTACAA i cerAty1.NW_012001307v1 I 3 C 0 s chlSab2.chr7 122909168 113 - 135778131 GGAAACTGGCTCTTGCACTCTCCCGCTAACCCAGCAGAGCAACGAAGCCACATGCCTTCCCTCCAAAG-CCCCAGAACTCTCTTGTTTTGTTCTCTCAGAAGCAAAAAGTACAA i chlSab2.chr7 I 3 C 0 s manLeu1.NW_012104388v1 2021224 113 + 2427316 GGAAACTGGCTCTTGCACTCTCCCGCTAACCCAGCAGAGCAAGGAAGCCACATGCCTTCCCTCCAAAG-CCCCAGAACTCTCTTGTTTTGTTCTCTCAGAAGCAAAAAGTACAA i manLeu1.NW_012104388v1 I 3 C 0 s colAng1.NW_012119221v1 1316493 111 + 1448899 GGAAACTGGCTCTTGCACTCTCCCGCTAACCCAGCAGAGCAAGGAAGCCACATGCCTTCCCTCCAAAG-CCCCAGAACTCTCTTGTTTTGTTCTCTCAGAAGCAAAAAGTAC-- i colAng1.NW_012119221v1 I 3 C 0 s calJac3.chr3 53026540 112 - 190850796 GGAAACTGGCTCTTGTGCT-TCCCCCTAACCCAGCAGAGCAAGAAAGCTGCATGCCTTCCCTCCAAGG-CCCCAGAACACTCTCATTTTGTTCTCTCAGAAGCAAAAAGTACAA i calJac3.chr3 I 3 C 0 s saiBol1.JH378162 8186771 88 - 15139346 GGAAACTGGTTCTTGCGCT-TCCCCCTAACCCAGCAGAGCAAGGAAGCCGCATGACTTCCCTCCAAGG-C------------------------CTCAGAAGCAAAAAGTACAG i saiBol1.JH378162 I 3 C 0 s cebCap1.NW_016107439v1 6972779 112 - 7304997 GGAAGCTGGCTCTTGCACT-TACCTCTAATCCAATAGAGCAAGGAAGCTGCATGCCTTCCCTCCAAGG-CCCCAGAATGCTCTTGTTTTGTTCTCTCAGAAGCAAAAAGTACAA i cebCap1.NW_016107439v1 I 3 C 0 s aotNan1.NW_018493494v1 9388491 112 - 11631747 GGAAACTGGCTCTTACGCT-TCCCCCTAACCCAGCAGAGCAAGGAAGCCGCATGCCTTCCCTCCAAGG-CCCCAGAATGCTCTCATTTTGTTCTCTCAGAAGCAAAAAGTACAA i aotNan1.NW_018493494v1 I 3 C 0 s proCoq1.NW_012140747v1 1876346 108 + 4188776 GGAAAGCGGCTCCTGCACTCTCTCCCTAACCCAGCAGAGCAAGGAAGCTACGTGCCATCCCCCC-----CTCCAGACTCCTCTCATTTTCTTCTCTCAGAAGC-AAAAGTACAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8622461 98 + 8790067 GAAAAACGGCCTCTGCACTCTCTTTCTGACCCAGCAGAGCAAGACAGCCTCATGCCATCCCTTCCAGGACTCCAGACTTCT----------------AGAATCAAAAAGGACAA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48010036 104 + 63241923 GGAAGGTGGCT-------GCTTTCCCTAAGCCAGCAGAATAAAGAGGCAGCATGCCTTGAACCCCAGA-CCTCAAACCCCTCTCCTTT--TTCTCTCAGAAGCACAGAGTACAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4099473 90 - 5279953 ---------CTCTT----TGCTGCACCAAACTAGTATTGTGAGGAAGCAGCAGGCCTTCTCCTCCCAC-CCTCAAACACCTCTC------TTCCCTCAGGAACAGGGGGA---- i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1789113 726 + 3286835 I e mm10.chr5 76421238 332 + 151834684 I a score=2395613.000000 s hg38.chr4_KI270787v1_alt 70520 204 + 111943 TGACTTGAATTC--TCCCCACCAGT------CCCTTCCATTCCCGAACTTGGGGCTGAAGTGTCTCCTGAACGAAAC-CCCTACCCCACACTTGT--ACTTT---CTATTT-GTCCTTCCATCTTTGCAAACCTTGCTCCTCCAGGGTCACCAAACACTAAACGAGATGCC-TGCCATGCACT--ACAAAAATTAACACTC-AT-TAATCACAG----ACTATGTTGT s panTro5.chr4 119635216 204 - 194502333 TGACTTGAATTC--TCCCCACCAGT------CCCTTCCATTCCCGAACTTGGGGCTGAAGTGTCTCCTGAATGAAAC-CCCTACCCCACACTTGC--ACTTT---CTATTT-GTCCTTCCATCTTTGCAAACCTTGCTCCTCCAGGGTCACCAAACACTAAACGAGATGCC-TTCCATGCACT--ACAAAAATTAACACTC-AT-TAATCACAG----ACTATGTTGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121048626 204 - 195804263 TGACTTGAATTC--TCCCCACCAGT------CCCTTCCATTCCCGAACTTGGGGCTGAAGTGTCTCCTGAATGAAAC-CCCTACCCCACACTTGC--ACTTT---CTATTT-GTCCTTCCATCTTTGCAAACCTTGCTCCTCCAGGGACACCAAACACTAAACGAGATGCC-TGCCATGCACT--ACAAAAATTAACACTC-AT-TAATCACAG----ACTATGTTGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4479883 204 - 17550833 TGACTTGAATTC--TCCCCACCAGT------CCCTTCCATTCCCGAACTTGGGGCTGAAGTGTCTCCTGAACCAAAC-CCCTACCCCACACCTGC--ACTTT---CTATTT-GTCCTTCCATCTTTGCAAACCTTGCTCCTCCAGGGTCACCAAACACTAAACGAGATGCC-TGCCATGCACT--ACAAAAATTAACACTC-AT-TGATCACAG----ACTATGTTGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69353261 204 - 118206036 TGACTTGAATTC--TCCCCACCAGT------CCCTTCCATTCCCGAACTTGGGGCTGAAGTGTCTCCTGAACCAAAC-CCCTACTCCACACCTGC--ACTTT---CTGTTT-GTCCTTCCATCTTTGCAAACCTTGCTCCTCCAGGGTAACCAAACACTCCACAAGATGCC-TGCCATGCACT--ACACAAATTAACACTC-AT-TGATCACAG----ACTATGTTGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111562413 203 - 190429646 TGACTTGAATTC--TCCCCACCAGT------CCCTTCCATTCCTGATCTTGGGGCTGAAGTATCTCCTAAACCAAAC-CCCTGCCTGACACCTGC--ACTTT---CTATTT-GT-CTTCCATCTTTGCAAACCTTGCTCCTCCAGGGTCACCAAACACCCCACAAGATGCC-TGTCATGGACT--ACACAAATTAACACTC-AT-TGATCACAG----ACTATGTTGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110731602 203 - 189454096 TGACTTGAATTC--TCCCCACCAGT------CCCTTCCATTCCTGATCTTGGGGCTGAAGTATCTCCTAAACCAAAC-CCCTGCCTGACACCTGC--ACTTT---CTATTT-GT-CTTCCATCTTTGCAAACCTTGCTCCTCCAGGGTCACCAAACACCCCACAAGATGCC-TGCCATGGACT--ACACAAATTAACACTC-AT-TGATCACAG----ACTATGTTGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13298102 203 + 26754465 TGATTTGAATTC--TCCCCACCAGT------CCCTTCCATTCCTGATCTTGGGGTTGAAGTATCTCCTAAACCAAAC-CCCTGCCTGACACCTGC--ACTTT---CTATTT-GT-CTTCCATCTTTGCAAACCTTGCTCCTCCAGGGTCACCAAACACCCCACAAGATGCC-TGCCATGGACT--ACACAAATTAACACTC-AT-TGATCACAG----ACTATGTTGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4199651 203 - 5137665 TGACTTGAATTC--TCCCCACCAGT------CCCTTCCATTCCCGATCTTGGGGCTGAAGTATCTCCTAAACCAAAC-CCCTGCCTGACACCTGC--ACTTT---CTATTT-GT-CTTCCATCTTTGCAAACCTTGCTCCTCCAGGGTCACCAAACACCCCACAAGATGCC-TGCCATGGACT--ACACAAATTAACACTC-AT-TGATTACAG----ACTATGTTGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122909281 204 - 135778131 TGACTTGAATTC--TCCCCACCAGT------CCCTTCCATTCCCAATCTTGGGGCTGAAGTATCTCCTAAACGAAAC-CCCTGCCTGACACCTGC--ACTTT---CTATTT-GTCCTTCCATCTTTGCAAACCTTGCTCCTCCAGGGTCACAAAACACCCCACAAGATGCC-TGCCATGGACT--ACACAAATTAACACTC-AT-GGATCACAG----ACTATGTTGT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2021337 203 + 2427316 TGACTTGAATTC--TCCCCACCAGT------CCCTTCCATTCCCGATCTTGGGGCTGAAGTATCTCCTAAACCAAAC-CCCTGCCTGACACCTGC--ACTTT---CTATTT-GT-CTTCCATCTTTGCAAACCTTGCTCCTCCAGGGTCACCAAACACCCCACTAGATGCC-TGCCATGGACT--ACACAAATTAACACTC-AT-TGATCACAG----ACTAGGTTGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1316604 203 + 1448899 -GACTTGAATTC--TCCCCACCAGT------CCCTTCCATTCCCGATCTTGGGGCTGAAGTATCTCCTAAACCAAAC-CCCTGCCCAACACTTGC--ACTTT---CTATTT-GTCCTTCCATCTTTGCAAACCTTGCTCCTCCAGGGTCACCAAACACCCCACAAGATGCC-TGCCATGAACT--ACACAAATTAACACTC-AT-TGATCACAG----ACTATGTTGT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53026652 203 - 190850796 CGACTTGAATTC--TCCCCATCAGT------CCCTTCCATTCCCAAACTTGGGGCTGAAGTGTCTCCTGAACCAAAC-CCCTGCCC-ACACCTGC--ACTTT---CTATTT-GTCCTTCCAGCTTTGCAAATCTTGCTCCTCCAGGGTCACCAAACATTCCACAAGATGCC-TGCCGTGCACT--ACACAAATTAACACTC-AT-GGATCACAG----AATATGTTGT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8186859 202 - 15139346 TGA-TTGAATTC--TCCCCATCAGT------CCCTTCCATTCCCAAACTTGGGGCTGAAGTGTCTCCTGAACCAACC-CCCTGCCC-ACACCTGC--ACTTT---CCATTT-GTCCTTCCATCTTTGCAAATCTTGCTCCTCCAGAGTCACCAAACATTCCACAAGACACC-TGCCATGCACT--ACGCAAATTAACACTC-AT-TGATCACAG----AATATGTTGT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6972891 207 - 7304997 TGACTTGAATTC--TCCCTGTCAGT------CCCTTCCATTCCCAAACTTGGGGCTGAAGTGTCTCCTGAACCAAAC-CCCTGCCC-ACACCTGC--ACTTT---CTATTT-GTCCTTCCATCTTTGCAAATCTTGCTCCTCCAGGGTCACCAAACATTTCACAAGATGCC-TGCCATGCACT--ATGCAAATTAACACTC-AC-TGATCACAGAATAAATATGTTGT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9388603 203 - 11631747 TGACTTGAATTC--TCCCCATCCGT------CCCTTCCATTCCCAAACTTGGGGCTGAAGTGTCTCCTGAACCAAAG-CCCTGCCC-ACACCTGC--ACTTT---CTATTT-GTCCTTCCATCTTTGCAAATCTTGCTCCTCCAGGGTCACCAAACATTCCACAAGATGCC-TGCCATGCACT--ATGCAAATTAACACTC-AT-TGATCACAG----AATATGTTGT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1876454 205 + 4188776 TGACTGGAACTC--CCCCCACTACC------CACTTCCATCCATGAACCTGGGGCTGAAGTGACTCCTGGGCCAACC-CCCTAGCCCAGACCTGC--ACTTT---CTATTCAGTCCTTC-ATCTTTGCAAACCTTGTTATTCCAGAGTTACCGAACACTCCGCAAGATGCC-TGCTACGTACC--AGGCAAAATAATACTCTGT-GGACCACCG----AATGTGTTAC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8622559 213 + 8790067 TGACTCAAACCC--CTCTCATCACCATTCATCCCCTCTGTCAGTGAACCTGGGGCTGAAGTGGCCCCTTGGCCTATG-CTTGACCCTGGACCTGC--ACTTT---TCCCTCAGATCTTCTGCCTTCGCTAACCTTGTGTTTCCAGAGTGAGAGAACATGCCTCAAGATGCCACTACACACACC--AGGCAAATTAACACCCTCT-TGACCAACA----AATATGTTAC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76421570 190 + 151834684 TGCCTTGAA-----CCACAGGCTGT------CCCACACATGCCTG--CCTTGAACCACAG----CCTTGAACCATAG--GCTATCCCACATGTGCCTGCCTTGAACCATAG-GCTATCCCACACATGCCTGCCTT---------GAACCACAGGCTATCCCACACG-TGCC-TGCCTTGCACT--AGGCAAATCCACACCCAAC-TGACCACCA----ACCAAGCAGC i mm10.chr5 I 332 C 0 s canFam3.chr13 48010140 186 + 63241923 CATCTTGAATTCCACCTCCATGAGT------CCTTTCCATCCATGAAACT-GCACCAAAGCACCTCCTGGGCCA---------------GCCCAC--AGCCC---CC-----CTCCTTCCATCCTTGCAGACTCTGCCTCT-CAGAGTTGCAGAACAC-CCACAAGCTGCC-TGGTAGGTACT--AGACACACTTGCATCC-ACATGATCAGTA----AACATGTGGC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4099563 181 - 5279953 -----------C--TCCACACCAGT------CCCTCTCACCCTCGAATGTGGGACTGAAGTGTTTCCCAACTCAACCTCTCTACCCCAGACCTGA--GTTAT---CTGTTT-GGCTGTACCCCTTTGCAGACCCTGCTCCTCCAGGGTCACCGGATGCTCTGCCAGGTGGC-TGTTTTGCACTAGACGCACACTGACACCCAAC-TGG-------------------- i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1789113 726 + 3286835 I a score=5155541.000000 s hg38.chr4_KI270787v1_alt 70724 315 + 111943 AATGTGAA-TAAAGAAAAACAAAATTAGCTTTAAAATGCTTA-GAAAATGACATCCATTAAATTTAGAGGCTCAC-AAAGTCCAAGGCATCTCAACTCC---------------------------------------------TAAATTCTTAAGTCCCATTACA--TTGGTTT--CTTCCTCATGGTGTTCTGCCTACTGCCCACGATTCCTATTGAGC-AAATGTAGAG--CAAATTAATTTGTTTTTCATCTTTTGACAGGTTTCATGGTATTTAGAGGAAAATAAAAGTGTTTTATTGATTCGACAGTGAATCTGAAAGGCTTTCACATCTATCCTCAAGTCAATGAGTGCTCTAAGGGTATAGA s panTro5.chr4 119635420 315 - 194502333 AATGTGAA-TAAAGAAAAATAAAATTAGCTTTAAAATGCTTA-GAAAATGACATCCATTAAATTTAGAGGCTCAC-AAAGTCCAAGGCATCTCAACTCC---------------------------------------------TAAATTCTTAAGTCCCATTACA--TTGGTTT--CTTCCTCATGGTGTTCTGCCTACTGCCCACGATTCCTATTGAGC-AAATGTAGAG--CAAATTAATTTGTTTTTCATCTTTTGACAGGTTTCATGGTATTTAGAGGAAAATAAAAGTGTTTTATTGATTCGACAGTGAATCTGAAAGGCTTTCACATCTATCCTCAAGTCAATAAGTGCTCTAAGGGTATAGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121048830 315 - 195804263 AATGTGAA-TAAAGAAAAATAAAATTAGCTTTAAAATGCTTA-GAAAATGACATCCATTAAATTTAGAGGCTCAC-AAAGTCCAAGGCATCTCAACTCC---------------------------------------------TAAATTCTTAAGTCCCATTACA--TTGGTTT--CTTCCTCATGGTGTTCTGCCTACTGCCCACGATTCCTATTGAGC-AAATGTAGAG--CAAATTAATTTGTTTTTCATCTTTTGACAGGTTTCATGGTATTTAGAGGAAAATAAAAGTGTTTTATTGATTCGACAGTGAATCTGAAAGGCTTTCACATCTATCCTCAAGTCAATAAGTGCTCTAAGGGTATAGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4480087 315 - 17550833 AATGTGAA-TAAAGAAAAACAAAATTAGCTTTAAAATGCTTA-GAAAATGACATCCATTAAATTTAGAGGCTCAC-AAAGTCCAAGGCATCTCAACTCC---------------------------------------------TAAATTCTAAAGTCCCATTACA--TTGGTTT--CTTCCTCGTGGTGTTCTGCCTACTGCCCACGATTCCTATTGAGC-AAATGAAGAG--CAAATTAATTTGTTTTTCATCTTTTGACAGGTTTCATGGTATTTAGAGGAAAATAAAAGTGTTTTATTGATTCGACAGTGAATCTGAAAGGCTTTCACATCTATCCTCAAGTCAATGAGTGCTCTAAGGGTATAGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69353465 315 - 118206036 AATGTGAA-TAAAGAAAAACAAAATTAGCTTTAAAATGCTTA-GAAAATGACATCCATTAAATTTAGAGGCTCAC-AAAATCCAAGGCATCTCAACTCC---------------------------------------------TAAATTCTAAAGTCCCATTACA--TTGGTTT--CTTCCTCATGGTGTTCTGCCTACTGCCCACGATTCCTATGGAGC-AAATGTAGAG--CAAATTAATTTGTTTTTCATCTTTTGGCAGGTTTCATGGTATTTAGAGGAAAATAAAAGTGTTTTATTGATTCAACAGTGCATCTGAAAGGCTTTCACATCTATCCTGAAGTCAATGAGTGTTCTAAGGGTATAGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111562616 314 - 190429646 AATGTGGA-TAAAGAAAAACAAAATTAGCTTTAAAATGCTTA-GAAAATGACATCCATTAAATTTAGACTCTCAC-AAAATCCAAGGCATCTCAACTCC----------------------------------------------AAATTCTAAAGTCCCATTACA--TTGGTTT--CTTCCTCACGCTGTTCTGCCTACTGCCCATGATTCCTATTGAGC-AAACGTAGAG--CAAATTAATTTGTTTTTCATCTTTTGGCAGGTTTCACGGTATTTAGAGGAAAATAAAAGTGTTTTATTGATTCGACAGTGAATCTGAAAGGCTTTCAGATCTATCCTCAAGTCAATGAGTGCTCTAAGGGTATAGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110731805 314 - 189454096 AATGTGGA-TAAAGAAAAACAAAATTAGCTTTAAAATGCTTA-GAAAATGACATCCATTAAATTTAGACTCTCAC-AAAATCCAAGGCATCTCAACTCC----------------------------------------------AAATTCTAAAGTCCCATTACA--TTGGTTT--CTTCCTCACGCTGTTCTGCCTACTGCCCATGATTCCTATTGAGC-AAACGTAGAG--CAAATTAATTTGTTTTTCATCTTTTGGCAGGTTTCACGGTATTTAGAGGAAAATAAAAGTGTTTTATTGATTCGACAGTGAATCTGAAAGGCTTTCAGATCTATCCTCAAGTCAATGAGTGCTCTAAGGGTATAGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13298305 314 + 26754465 AATGTGGA-TAAAGAAAAACAAAATTAGCTTTAAAATGCTTA-GAAAATGACATCCATTAAATTTAGACTCTCAC-AAAATCCAAGGCATCTCAACTCC----------------------------------------------AAATTCTAAAGTCCCATTACA--TTGGTTT--CTTCCTCACGCTGTTCTGCCTACTGCCCATGATTCCTATTGAGC-AAACGTAGAG--CAAATTAATTTGTTTTTCATCTTTTGGCAGGTTTCACGGTATTTAGAGGAAAATAAAAGTGTTTTATTGATTCGACAGTGAATCTGAAAGGCTTTCAGATCTATCCTCAAGTCAATGAGTGCTCTAAGGGTATAGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4199854 314 - 5137665 AATGTGGA-TAAAGAAAAAAAAAATTAGCTTTAAAATGCTTA-GAAAATGACATCCATTAAATTTAGACTCTCAC-AAAATCCAAGGCATCTCAACTCC----------------------------------------------AAATTCTAAAGTCCCATTACA--TTGGTTT--CTTCCTCACGCTGTTCTGCCTACTGCCCATGATTCCTATTGAGC-AAACGTAGAG--CAAATTAATTTGTTTTTCATCTTTTGGCAGGTTTCACGGTATTTAGAGGAAAATAAAAGTGTTTTATTGATTCGACAGTGAATCTGAAAGGCTTTCAGATCTATCCTCAAGTCAATGAGTGCTCTAAGGGTATAGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122909485 314 - 135778131 AATGTGGA-TAAAGAAAAACAAAATTAGCTTTAAAATGCTTA-GAAAATGACATCCATTAAATTTAGACTCTCAC-AAAATCCAAGGCATCTCAACTGC----------------------------------------------AAATTCTAAAGTTCCATTACA--TTGGTTT--CTTCCTCACGCTGTTCTGCCTACTGCCCATGATTCCTATTGAGC-AAACATAGAG--CAAATTAATTTGTTTTTCATCTTTTGGCAGGTTTCACGGTATTTAGAGGAAAATAAAAGTGTTTTATTGATTCGACAGTGAATCTGAAAGGCTTTCAGATCTATCCTCAAGTCAATGAGTGCTCTAAGGGTATAGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2021540 314 + 2427316 AATGTGGA-TAAAGAAAAACAAAATTAGCTTTAAAATGCTTA-GAAAATGACATCCATTAAATTTAGACTCTCAC-AAAATCCAAGGCATCTCAACTCC----------------------------------------------AAATTCTAAAGTCCCATTACA--TTGGTTT--CTTCCTCACGCTGTTCTGCCTACTGTCCATGATTCCTATTGAGC-AAACGTAGAG--CAAATTAATTTGTTTTTCATCTTTTGGCAGGTTTCATGGTATTTAGAGGAAAATAAAAGTGTTTTATTGATTCGACAGTGAATCTGAAAGGTTTTCAGATCTATCCTCAAGTCAATGAGTGCTCTAAGGGTATAGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1316807 314 + 1448899 AATGTGAA-TAACGAAAAACAAAATTAGCTTTAAAATGTTTA-GAAAATGACATCCATTAAATTTAGAGTCTCAC-AAAATCCAAGGCATCTCAACTCC----------------------------------------------AAATTCTAAAGTCCCATTACA--TTGGTTT--CTTCCTCACGCTATTCTGCCTACTGCCCATGATTCCTATTGAGC-AAACGTAGAG--CAAATTAATTTGTTTTTCATCTTTTGGCAGGTTTCACGGTATTTAGAGGAAAATAAAAGCGTTTTATTGATTCGACAGTGAATCTGAAAGGCTTTCAGATCTATCCTCAAGTCAATGAGTGCTCTAAGGGTATAGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53026855 313 - 190850796 CACGTGAA-TAAAGAAAAACAAAATTAGCTTTAAAATGCTTA-GAAAATGGCGTCTATTAAATATAGAGGCTCAC-AAAATCCAAGGCATCTCAACTCC---------------------------------------------CAAATTCTAAAGTCTCATTACA--CTGGTTT--CTCCCTGATAGTGTTCTGCCTACTGCCCACGATTCCTATCCAGC-AAATGTAGAG--CAAATTAATTTGTTTTTCATC-TTTGGCAGGTTTCATGGCATTTAGGGGAAAATAAAAGTGTTTTATTGATTCGACAGTGAATCTGAAAGGCTTTCAGATCTATCCTCAAGTCAATGAGTGCTCTAAGGGTAT-GA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8187061 314 - 15139346 AATGTGGG-TAAAGAAAAACAAAATTAGCTTTAAAATGCTTA-GAAAATGGCATCTATTAAATTTAGAGGCTCAC-AAAATCCAAGGCATCTCAACTCC---------------------------------------------CAAATTCTAAAGTCTCATTACA--CTGGTTT--CTTCCTCATGGTGTTCTGCCTACTGCCCACGATTCCTATCCAGC-AAATGTAGAG--CAAATTAATTTGTTTTTCATC-TTTGGCAGGTTTCATGGCATTTAGGGGAAAATAAAAGTGTTTTATTGATTCGACAGTGAATCTGAAAGGCTTTCAGATCTATCCTCAAGTCAATGAGTGCTCTAAGGGTATAGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6973098 314 - 7304997 GATGTGAA-TAAAGAAAAACAAAATTAGCTTTAAAATGCTTA-GAAAATGGCATCTATTAAATTTAGAGGCTCAC-AAAATCCAAGGCATCTCAACTCC---------------------------------------------CAAATTCTAAAGTCTCATTATG--CTGGTTT--CTTCCTCATGGTGTTCTGCCTACTGCCCACGATTCCTATCCAGC-AAATGTAGAG--CAAATTAATTTGTTTTTCACC-TTTGGCAGGTTTCATGGCATTTAGGGGAAAATAAAAGTGTTTTATTGATTCGACAGTGAATCTGAAAGGCTTTCAGATCTATCCTCAAGTCAATGAGGGCTCTAAGGGTATAGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9388806 315 - 11631747 AATGTGAATTTAAAAAAAACAAAATTAGCTTTAAAATGCTTA-GAAAATGGCATCTATTAAATTTAGAGGCTCAC-AAAATCCAAGGCATCTCAACTCC---------------------------------------------CATATTCTAAAGTCTCATTACA--CTGGTTT--CTTCCTCATGGTGTTCTGCCTACTGCCCACGATTCCTATCCAGC-AAATGTAGAG--CAAATTAATTTGTTTTTCATC-TTTGGCAGGTTTCATGGCATTTAGGGGAAAATAAAAGTGTTTTATTGATTGGACAGTGAATCTGAAAGGCTTTCATATCTATCCTCAAGTCAATGAGTGCTCTAAGGGTCTAGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1789839 311 + 3286835 AATGTGAA-TAAAGAAAATAAAAATTAGCTTTAAAATGCTGA-GGAAATTACATCTATTCACTTCAGATGCTCAG-AAAAT-----TCATCTTAACTCC---------------------------------------------CAAATTCTAAAGTTTCATTGCT--TTTTTTTTCCTTCCTCATCGTGTTCTGCTTACTGCCCATTATTCCTATTGAGC-AGATGTAGAG--CAAATTAATTTGTTTTTCATCTTTTGGCAGGTTTCACAGTA-TTAAAGGAAAATAAAAGTGTTTTATTGATTCGATGGTGAATCTGAAAGGCTTTCAGATCTATCCTCAAGTCAATGAGTGCTCTAAGCATATAGA i micMur3.chrUn_NW_017968520v1 I 726 C 0 s proCoq1.NW_012140747v1 1876659 316 + 4188776 AAAGTGAA-TAAAGAAAATAAAAATTAGCTTTAAAATGCTGA-GGAAATTACATCTATTATATTCAGATGCTTAC-AAAATCCAAGTCATCTTAACTCC---------------------------------------------CAAATTCTAAAGTTTCATTATT--TTTTTTTTCCTTCCTCATACTGTTCTGCCTACTGCCCATTATTCCTATTGAGC-AAATGTAGAG--AAAATTAATTTGTTTTTCATCTTTTGGCAGGTTTCACAGTA-TTAAAGGAAAATAAAAATGTTTTATTGATTCAATGGTGAATCTGAAAGGCTTTCAGATCTATCCTCAAGTCAATGAGTGCTCTAAGCATATAGA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8622772 313 + 8790067 AATGTGAA-AAAAGAAGATAAATCTTAGCTTTAAAATGCTGA-ACAAATTACACTGATTAAATTCAGATGCTGAC-CAAATCCAAGACATCTTAACTTC---------------------------------------------CAAGTTATAAAGTCTCATT-CC--TTTTTTTCCCTTCCTCCCAGTGCTATGCCTCCCACTGATCATGCCCATTGAGC-AAATGTAGAG--CAAATTAATTTATTTTTCATCTTTTGGCAGGTTTCATAGTA-TTAAAAGAAAATAAACATATTTTATTGATTCAATGGTGAATCTGAAAGGCTTTTAGATGTATCCTT--GTCAGTGAGCATCCTGAGGGTGTAGA i otoGar3.GL873602 C 0 I 245 s mm10.chr5 76421760 353 + 151834684 AATACGAA-TAAAGGAAAACAAAAGTGGCTTCAAGCTACTTA-GAAAATAAC---TATTCGGTTTAAACACTCAC-GGAGCCTAAGCCATCTCAAGTCTTAGCCTCTGATGCTCTCTCAAGCTAATTCAGGCTGTCTCAACTCACAAATTCTAAAGCTCCACTAAT--GGCTTTT--CCCCCTCATCCTTTTCTATCTG-TGC-----ATTCTTATTGAGC-AGATGAAAAAATTAAATTAATTAGATTTTCTTCTTTTGCCAAGTTTCGCAGTATTTGAGAAAAAGTAAAAGCATTTTATTGATTCAGTGGTGAATCTGAAAGGCTTTTAGATCTGTCTTCTGGGTAACAAGTGCTCTAAAAGTATAGT i mm10.chr5 C 0 I 8 s canFam3.chr13 48010326 313 + 63241923 AATGTGCC-TAAAGAAAAACAAAATTAGCTTATACATGCTGATAAAAATCGCATC-GTGAAACTCAGGGGCTCACAAAAATCCAAGTACTCTCAACTCC---------------------------------------------CAAATTCTAAAGTTCCAGTGAA--TTTGTTT--TCTCCTCA--GAGTTTTACCTACTGCTCATTACTCCTGCTGAGC-AAATGGAGAG--CAAATTAATTTGTTTTTCATCTTTTGGAAGGTTTCACATTA-TTAGAGGAAAACAAAAGTGTTTTATTGACTTGATAGTGAATATGAAAGGCTTTCAGATCTATCCTCAAGTCAATGAATGCTCTAAGGGTATAGA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4099744 311 - 5279953 AATGTGAA-TAAAGAAAAACAAAGTTAGCCTAG------TTA-GAATATTACAGCTACTAAAATCGGAAGCTCAA-AAAATCTAAGTCATCTCAACCCC---------------------------------------------CAAATTCTTGAGGTCCATTAAAAGTGATTTT--TTTCCTCAAGGTGTTCTGCCTGCTGACCATTTTTCCTTTCAAGCAAAATGTAGAA--CAAATTAATTTGCTTCTCTTCTTTTGGCAAGTATCACAGTA-TTAACGGAAAATAAAAGTGTTTTATTGATTTGATGGTGAATTTGAAAGGCTTTCAGATCCATCCTCAAATCAATAAATGTTCTAAGGTTATAGA i dasNov3.JH568349 C 0 C 0 a score=661686.000000 s hg38.chr4_KI270787v1_alt 71039 47 + 111943 TCATCA-----AAAATAAAATCAAGGGCTTAA-AAT--ATAAAGAAAGAAAAGGA s panTro5.chr4 119635735 47 - 194502333 TCATCA-----AAAATAAAATCAAGGGCTTAA-AAT--ATGAAGAAAGAAAAGGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121049145 47 - 195804263 TCATCA-----AAAATAAAATCAAGGGCTTAA-AAT--ATGAAGAAAGAAAAGGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4480402 47 - 17550833 TCATCA-----AAAATAAAATCAAGGGCTTAA-AAT--ATGAAGAAAGAAAAGGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69353780 52 - 118206036 TCACCAAAAATAAAATAAAATCAAGGGCTTAA-AAT--ATGAAGAAAGAAAACGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111562930 53 - 190429646 TCATCAAAAATAAAACAAAATCAAGGGCTGAAAAAA--ATGAAGAAAGAAAAGGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110732119 53 - 189454096 TCATCAAAAATAAAACAAAATCAAGGGCTGAAAAAA--ATGAAGAAAGAAAAGGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13298619 53 + 26754465 TCATCAAAAATAAAACAAAATCAAGGGCTGAAAAAA--ATGAAGAAAGAAAAGGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4200168 53 - 5137665 TCATCAAAAATAAAACAAAATCAAGGGCTGAAGAAA--ATGAAGAAAGAAAAGGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122909799 53 - 135778131 TCATCAAAAATAAAACAAAATCAAGGGCTGAAAAAA--ATGAAGAAAGAAAAGGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2021854 53 + 2427316 TCATCAAAAATAAAATAAAATCAAGGGCTGAAAAAA--ATGAAGAAAGAAAAGGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1317121 53 + 1448899 TCATCAAAAATAAAATAAAATCAAGGGCTGAAAAAA--ATGAAGAAAGAAAAGGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53027168 53 - 190850796 TCATCAAAAATAAAATAAAATAAAGGGCTTAAAAAT--ATGAAGAAAGAATAGGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8187375 48 - 15139346 TCATCA-----AAAATAAAATAAAGGACTTAAAAAC--GTGAAGAAAGAAAAGGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6973412 53 - 7304997 TCATCAAAAATAAAATAAAATAAAGGGCTTAAAAAT--ATGAAGAAAGAAAAGGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9389121 53 - 11631747 TCATCAAAAATAAAATAAAATAAAGGGCTTAAAAAT--ATGAAGAAAGAAAAGGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1790150 51 + 3286835 TCATCTAAAATAAAATAACATAAGGGGATTAAAAA----TGAAGAAAGAAAAGGA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1876975 51 + 4188776 TCATCTAAAACAAAATAACATAAAGGGCTTAGAAA----TGAAGAAAGAGAAGGA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8623330 47 + 8790067 TCATCAAAAATAAA-----ATAAAGGGCTTAAAAA---GTGAAGAGAGAAAAAGA i otoGar3.GL873602 I 245 C 0 s mm10.chr5 76422121 46 + 151834684 TTTTTT-----TAAGTAAAATGAAGGGCTGAAAAATAAATGAAGAAAGGAA---- i mm10.chr5 I 8 I 1112 s canFam3.chr13 48010639 43 + 63241923 TCATCA-----AAAATAGAATTAAGGACTAAAAAA---ATGAAGAAAAGGA---- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4100055 52 - 5279953 TTATCAAAAATAAAATAAAATTAAGGGCTTGAAAA---ATGAAGACAAGAAAGGA i dasNov3.JH568349 C 0 C 0 a score=1067217.000000 s hg38.chr4_KI270787v1_alt 71086 66 + 111943 ATAGC-TGTCATATCACTGGA-GTCCTCTGGAAAGCAAACTTTAATGCTAAAACTGTCAATAA--ATTGA s panTro5.chr4 119635782 66 - 194502333 ATAGC-TGTCATATCACTGGA-GTCCTCTGGAAAGCAAACTTTAATGCTAAAACTGTCAATAA--ATTGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121049192 66 - 195804263 ATAGC-TGTCATATCACTGGA-GTCCTCTGGAAAGCAAACTTTAATGCTAAAACTGTCAATAA--ATTGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4480449 66 - 17550833 ATAGC-TATCATATCACTGGA-GTCCTCTGGAAAGCAAACTTTAATGCTAAAACTGTCAATAA--ATTGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69353832 66 - 118206036 ATAGC-TGTCATATCACTGGA-GTCCTCTGGAAAGCAAACTTTAATGCTAAAACTGTCAATAA--ATTGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111562983 66 - 190429646 ATAGC-TGTCATATCACTGGA-GTCCTCTAGAAAGCAAACTTTAATGCTAAAACTGTCAATAA--ATTGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110732172 66 - 189454096 ATAGC-TGTCATATCACTGGA-GTCCTCTAGAAAGCAAACTTTAATGCTAAAACTGTCAATAA--ATTGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13298672 66 + 26754465 ATAGC-TGTCATATCACTGGA-GTCCTCTAGAAAGCAAACTTTAATGCTAAAACTGTCAATAA--ATTGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4200221 66 - 5137665 ATAGC-TGTCATATCACTGGA-GTCCTCTAGAAAGCAAACTTTAATGCTAAAACTGTCAATAA--ATTGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122909852 66 - 135778131 ATAGC-TGTCATATCACTGGA-GTCCTCTAGAAAGCAAACTTTAATGCTAAAACTGTCAATAA--ATTGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2021907 66 + 2427316 ATAGC-TGTCATATCACTGGA-GTCCTCTAGAAAGCAAACTTTAATGCTAAAACTGTCAATAA--ATTGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1317174 66 + 1448899 ATAGC-TGTCATATCACTGGA-GTCCTCTAGAAAGCAAACTTTAATGCTAAAACTGTCAATAA--ATTGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53027221 67 - 190850796 ATAGT-TGTCATATCACTGGAGGTCCTCTGGAAAGCAAACTTTAATGCTAAAACAGTCAATAA--ATTGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8187423 67 - 15139346 ATAGC-TGTCATATCACTGGAGGTCCTCTGGAAAGCAAACTTTAATGCTAAAACGGTCAATAA--ATTGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6973465 64 - 7304997 ATAGC-TGTCATATCACTGGAGGTCCTCTGGAAAGCAAACTT---TGCTAAAACGGTCAATAA--ATTGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9389174 67 - 11631747 ATAGC-TGTCATAACACTGGAGGTCCTCTGGAAAGCAAACTTTAATGCTAAAACGGTCAATAA--ATTGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1790201 66 + 3286835 ATAGC-TGTCATGTCCCTGGA-ATCCTCTGGAAAGTAAACTTTAGTGCTAAATCTACCGATAA--ATTGC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1877026 66 + 4188776 ATAGC-TGTCATGTCACTGGA-GTCCTCTGGAAAGCAAACTTTAGTGCTAAATCTACCAACAA--ATTGC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8623377 68 + 8790067 GTAAC-TGTCATGTCATTGGA-GTCCTCTGGAAAGCAAAGTTTAGTGCTAAAGCTGCCAATAAATATTGT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48010682 67 + 63241923 ATAGCTTGTCATGTTGCTGGA-ATTCTCTGGAAAGCAAACTTTAATAGTAAGGCAACCAGTAA--ATTTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4100107 66 - 5279953 ATAGC-TGTCATGTCACTGAG-GTCCTCTAGAAAGCAAACTTTAGGGCTTAATCTACCAGTAA--ATTTA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76422167 1112 + 151834684 I a score=566513.000000 s hg38.chr4_KI270787v1_alt 71152 62 + 111943 TTGCATAG----------CATAAAGTTgtgcaaacagccctagggtgggaaggcatttgctgtgtgcaagga s panTro5.chr4 119635848 62 - 194502333 TTGCATAG----------CATAAAGTTgtgcaaacagccctagggtgggaaggcatttgctgtgtgcaagga i panTro5.chr4 C 0 C 0 s panPan2.chr4 121049258 62 - 195804263 TTGCATGG----------CATAAAGTTgtgcaaacagccctagggtgtgaaggcatttgctgtgtgcaagga i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4480515 62 - 17550833 TTGCATAA----------CATAAAGTTgtgcaaacagccctagggtgggaaggcatttgctgtgtgcaagga i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69353898 62 - 118206036 TTGCATAG----------CATAAAGTTgtgcaaacagcccgagggtgggaaggcatttgctgtgttcaagga i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111563049 39 - 190429646 TTGCATAG----------CATAAAGTTGTGCAAACAGCGTT-GGGTGGGA---------------------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110732238 39 - 189454096 TTGCATAG----------CATAAAGTTGTGCAAACAGCGTT-GGGTGGGA---------------------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13298738 39 + 26754465 TTGCATAG----------CATAAAGTTGTGCAAACAGCGTT-GGGTGGGA---------------------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4200287 39 - 5137665 TTGCATAG----------CATAAAGTTGTGCAAACAGCCTT-GGGTGGGA---------------------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122909918 39 - 135778131 TTGCATAG----------CATAAAGTTGTGCAAACAGCCTT-GGGTGGGA---------------------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2021973 39 + 2427316 TTGCATAG----------CATAAAGTTGTGCAAACAGCCTT-GGGTGGGA---------------------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1317240 39 + 1448899 TTGCATAG----------CATAAAGTTGTGCAAACAGCCTT-GGGTGGGA---------------------- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53027288 62 - 190850796 TTGCATTG----------AGTAAAGTTgtgcaaacagccctagggagggaaggcatttgctgtgtgtaagga i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8187490 62 - 15139346 TTGCACTG----------AGTAAAGTTgtgcaaacagccctagggtgggaaggcattggctatgtgcaagga i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6973529 62 - 7304997 TTGCATTG----------AGTAAAGTTgtgtaaacagccctagggtgggaaggcatttgctgtgtgcaagga i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9389241 62 - 11631747 TTGCATTG----------AGTAAAGTTgtgcaaacagccctagggtgggaaggcatttgctgtgtgcgagga i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1790267 62 + 3286835 TAGCATAG----------TGTAATGTAGTGCAAATAGCCCCTGGGAGGGAAGGCATTTTCTGTGTGCGAGGA i micMur3.chrUn_NW_017968520v1 C 0 I 100 s proCoq1.NW_012140747v1 1877092 62 + 4188776 TAGCATAG----------TGTAATGTagtacaactagccccagggtgggaaggcatttgctgtgtgcaagga i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8623445 61 + 8790067 TAGCACAG----------TGTAATGTAGTGCAAATAGCTCCA-GGTGGGAAGGGGTTTGCAATGTGCAGGGA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76423279 71 + 151834684 ttgcatagcccaatgccccataAGGAGGTAATAGTGGACTTTGAGTAGGAAGGAGTTTTCCATGCAAAAAA- i mm10.chr5 I 1112 C 0 s canFam3.chr13 48010749 61 + 63241923 TAGCACGG----------TGTaacatcatgcaaatagctctagaatggaa-ggaatttgctgtgttcgaaga i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4100173 62 - 5279953 TCGCATAG----------TGTAATGGAgtgcaaatagccctagaatgggaagaagtttgctgtgctcaggga i dasNov3.JH568349 C 0 C 0 a score=1132140.000000 s hg38.chr4_KI270787v1_alt 71214 99 + 111943 acagaaggaaggcccc--a-cacaatctagagcatg-----gtgggtgaag-----acgtaacaggtgtgagatgtcagagaATGATGTGGTACATTAAGTTA-----TTAGCctca------------------ s panTro5.chr4 119635910 99 - 194502333 acagaaggaaggcccc--a-cacaatctagagcatg-----gtgggtgaag-----acgtaacaggtgtgagatgtcagagaATGATGTGGTACATTAAGTTA-----TTAGCCTCA------------------ i panTro5.chr4 C 0 C 0 s panPan2.chr4 121049320 99 - 195804263 acagaaggaaggcccc--a-cacaatctagagcatg-----gtgggtgaag-----acgtaacaggtgtgagatgtcagagaATGATGTGGTACATTAAGTTA-----TTAGCCTCA------------------ i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4480577 98 - 17550833 acagaaggaaggcccc--a-cac-acctagagcatg-----gtgggtgaag-----acgtaacaggtgtgagatgtcagagaATGATGTGGTACATTAAGTTA-----TTAGCCTCA------------------ i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69353960 98 - 118206036 acagaaggaatgcccc--a-cac-acctagagcata-----gtgggtgaag-----aggtaaccggtgtgagatgtcagagaATGATGTGGTACATTAAGTTA-----TTAGCCTCA------------------ i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111563088 96 - 190429646 --CGAAGGAAGGCCCC--A-CAC-ACCTAGAGCATG-----GTGGGTGAAG-----AGGTAACCGTTGTGAGATGTTAGAGAATGATGTGGTTCATTAAGTTA-----TTAGCCTAA------------------ i rheMac8.chr5 C 0 I 26 s macFas5.chr5 110732277 96 - 189454096 --CGAAGGAAGGCCCC--A-CAC-ACCTAGAGCATG-----GTGGGTGAAG-----AGGTAACCGTTGTGAGATGTTAGAGAATGATGTGGTTCATTAAGTTA-----TTAGCCTAA------------------ i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13298777 96 + 26754465 --CGAAGGAAGGCCCC--A-CAC-ACCTAGAGCATG-----GTGGGTGAAG-----AGGTGACCGTTGTGAGATGTTAGAGAATGATGTGGTTCATTAAGTTA-----TTAGCCTAA------------------ i macNem1.NW_012012466v1 C 0 I 18 s cerAty1.NW_012001307v1 4200326 96 - 5137665 --CGAAGGAAGGCCCC--A-CAC-ACCTAGAGCATG-----GTGGGTGAAG-----AGGTAACCGTTGTGTGATGTTAGAGAATGATGTAGTTCATTAAGTTA-----TTAGCCTAA------------------ i cerAty1.NW_012001307v1 C 0 I 20 s chlSab2.chr7 122909957 96 - 135778131 --CGAAGGAAGGCCCC--A-CAC-ACCTAGAGCATG-----GTGGGTGAAG-----AGGTAACCGTTGTGAGATGTTAGAGAATGATGTGGTTCATTAAGTTA-----TTAGCCTAA------------------ i chlSab2.chr7 C 0 I 14 s manLeu1.NW_012104388v1 2022012 96 + 2427316 --CGAAGGAAGGCCCC--A-CAC-ACCTACAGCATG-----GTGGGTGAAG-----AGGTAACCGTTGTGAGATGTTAGAGAACGATGTGGTTCATTAAGTTA-----TTAGCCTAA------------------ i manLeu1.NW_012104388v1 C 0 I 1 s colAng1.NW_012119221v1 1317279 96 + 1448899 --CGAAGGAAGGCCCC--A-CAC-ACCTAGAGCATG-----GTGGGTGAAG-----AGGTGACCGTTGTGAGATGTTGGAGAATGATGTGGTTCATTAAGTTA-----TTAGCCTAA------------------ i colAng1.NW_012119221v1 C 0 I 16 s calJac3.chr3 53027350 95 - 190850796 ccaaaaggaaggcccccta-cac-acctatagcatg-----gtgagtgaag-----aggtaaccagtgtgagatgtcagagaatgatgtggtaca-----tca-----tTAGCCCCA------------------ i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8187552 100 - 15139346 acagaaggaaggcccccta-cac-acctatagcatg-----atgagtgaag-----aggtaactagtgtgagatgtcagagaATGATGTAGTACATTAAGTTA-----TTAGCCCGA------------------ i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6973591 100 - 7304997 acagaaggaaggcccccta-cac-acctatagcatg-----gtgagtgaag-----aggtaaccagcgtgagatgtcagagaATGATATGGTACATTAAGTTA-----TTAGCCCCA------------------ i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9389303 100 - 11631747 acagaaggaaggccctcta-cac-acctatagcatg-----gtgagtgaag-----aggtaaccagtgtgagatgtcagagaATGATGTGGTACATTAAGTTA-----TTAGCCCCA------------------ i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1877154 97 + 4188776 atagaaagaaggcccc--a-cac-acctacagcatg-----gtgggtgagg-----aggtaaccagtgtgaaatgtcagagaatgaggtggtaaagggagTTA------TAGCCCCA------------------ i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8623506 101 + 8790067 ACAGAATGAAAGCCCC--A-CGC-ACCTACAGCATGGGGGTGGGGGTGAGG------GGCAACCCATGGGAGATGTCAGAGAAT------GTAAAATGAATTATAACATTAGCCAAA------------------ i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76423350 70 + 151834684 AGACAGAGAAGATCTC--A-CAC-ACGCAGAACAAG-----CTATATGAAG-----------------TGGAATGTCTATGA-----GTGGTAAATTAACA---------------------------------- i mm10.chr5 C 0 C 0 s canFam3.chr13 48010810 97 + 63241923 acagaa--aaggcacc--attac-agctggagctct-----gtgggtgagg-----cagtcactgatgtgagaggtcagagaATGGTGAGGTAAATTGACTTA-----TGAGCCCCA------------------ i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4100235 116 - 5279953 acaaagagaaggcccc--a-cac-agctagagaatc-----agaggtgagGTCATCAGGTCACCAGTATGAAGTGTCAGAGAAT-----AGCGAATTGAATTA-----CTGGCCCTGAtctctctctctctttct i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790329 100 + 3286835 I a score=12741.000000 s hg38.chr4_KI270787v1_alt 71313 12 + 111943 ctctgccacaca s panTro5.chr4 119636009 12 - 194502333 CTCTGCcacaca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121049419 12 - 195804263 CTCTGCcacaca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4480675 12 - 17550833 CTCTGCcataca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69354058 12 - 118206036 ATCTGCcacaca i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110732373 11 - 189454096 -TCTGCctctct i macFas5.chr5 C 0 C 0 s manLeu1.NW_012104388v1 2022109 6 + 2427316 ------ctctct i manLeu1.NW_012104388v1 I 1 C 0 s calJac3.chr3 53027445 12 - 190850796 ATCTGCCATACA i calJac3.chr3 C 0 I 7 s saiBol1.JH378162 8187652 12 - 15139346 ATCTGCCATACA i saiBol1.JH378162 C 0 I 7 s cebCap1.NW_016107439v1 6973691 12 - 7304997 ATCTACCATACA i cebCap1.NW_016107439v1 C 0 I 72 s aotNan1.NW_018493494v1 9389403 12 - 11631747 ATCTGCcataca i aotNan1.NW_018493494v1 C 0 I 1 s proCoq1.NW_012140747v1 1877251 5 + 4188776 GTCTG------- i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8623607 5 + 8790067 ATCTG------- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76423420 4 + 151834684 ctct-------- i mm10.chr5 C 0 I 8 s canFam3.chr13 48010907 4 + 63241923 ATGT-------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4100351 12 - 5279953 ctttctctcact i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790329 100 + 3286835 I e colAng1.NW_012119221v1 1317375 16 + 1448899 I e chlSab2.chr7 122910053 14 - 135778131 I e cerAty1.NW_012001307v1 4200422 20 - 5137665 I e macNem1.NW_012012466v1 13298873 18 + 26754465 I e rheMac8.chr5 111563184 26 - 190429646 I a score=15446.000000 s hg38.chr4_KI270787v1_alt 71325 31 + 111943 ----cacacacacacacacac----acacacacacacac----- s panTro5.chr4 119636021 17 - 194502333 ----cacacacacacacacac----------------------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121049431 21 - 195804263 ----cacacacacacacacac----acac--------------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4480687 21 - 17550833 ----cacacacacacacacac----acac--------------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69354070 25 - 118206036 ----cacacacacacacacacaccgacac--------------- i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110732384 15 - 189454096 ----ctctctctctctctc------------------------- i macFas5.chr5 C 0 C 0 s manLeu1.NW_012104388v1 2022115 15 + 2427316 ----ctctctctctctctc------------------------- i manLeu1.NW_012104388v1 C 0 C 0 s calJac3.chr3 53027464 21 - 190850796 ----cacacacacacacacac----acTC--------------- i calJac3.chr3 I 7 I 3 s saiBol1.JH378162 8187671 21 - 15139346 ----cacacacacacacacac----acac--------------- i saiBol1.JH378162 I 7 I 5 s aotNan1.NW_018493494v1 9389416 20 - 11631747 ----aacacacacacacacac----aTT---------------- i aotNan1.NW_018493494v1 I 1 I 21 s mm10.chr5 76423432 17 + 151834684 ----ctctctctctctctccc----------------------- i mm10.chr5 I 8 C 0 s canFam3.chr13 48010911 17 + 63241923 ----CTCCCTCTCTCGCGCGT----------------------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4100363 30 - 5279953 ctctcacatacacacacacac----acac----------acCAA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1877256 0 + 4188776 C e micMur3.chrUn_NW_017968520v1 1790329 100 + 3286835 I e cebCap1.NW_016107439v1 6973703 72 - 7304997 I e otoGar3.GL873602 8623612 0 + 8790067 C e colAng1.NW_012119221v1 1317375 16 + 1448899 I e chlSab2.chr7 122910053 14 - 135778131 I e cerAty1.NW_012001307v1 4200422 20 - 5137665 I e macNem1.NW_012012466v1 13298873 18 + 26754465 I e rheMac8.chr5 111563184 26 - 190429646 I a score=4095.000000 s hg38.chr4_KI270787v1_alt 71356 1 + 111943 t s rheMac8.chr5 111563210 1 - 190429646 t i rheMac8.chr5 I 26 C 0 s macFas5.chr5 110732399 1 - 189454096 t i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13298891 1 + 26754465 t i macNem1.NW_012012466v1 I 18 C 0 s cerAty1.NW_012001307v1 4200442 1 - 5137665 t i cerAty1.NW_012001307v1 I 20 C 0 s chlSab2.chr7 122910067 1 - 135778131 t i chlSab2.chr7 I 14 C 0 s manLeu1.NW_012104388v1 2022130 1 + 2427316 t i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1317391 1 + 1448899 t i colAng1.NW_012119221v1 I 16 C 0 s mm10.chr5 76423449 1 + 151834684 t i mm10.chr5 C 0 C 0 s canFam3.chr13 48010928 1 + 63241923 T i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1877256 0 + 4188776 C e micMur3.chrUn_NW_017968520v1 1790329 100 + 3286835 I e dasNov3.JH568349 4100393 0 - 5279953 C e aotNan1.NW_018493494v1 9389436 21 - 11631747 I e cebCap1.NW_016107439v1 6973703 72 - 7304997 I e saiBol1.JH378162 8187692 5 - 15139346 I e calJac3.chr3 53027485 3 - 190850796 I e otoGar3.GL873602 8623612 0 + 8790067 C e panTro5.chr4 119636038 0 - 194502333 C e nomLeu3.chr9 69354095 0 - 118206036 C e gorGor5.CYUI01014963v1 4480708 0 - 17550833 C e panPan2.chr4 121049452 0 - 195804263 C a score=159196.000000 s hg38.chr4_KI270787v1_alt 71357 38 + 111943 ctctctctctctctctctctctctc--tctcatgtccttt s panTro5.chr4 119636038 31 - 194502333 -------TCTCTCTctctctctctc--tctcatgtccttt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121049452 31 - 195804263 -------acacTCTctctctctctc--tctcatgtccttt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4480708 21 - 17550833 -----------------tctctctc--tctcatgtccttt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69354095 31 - 118206036 -------acacTCTctctctctctc--tctcatgtccttt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111563211 38 - 190429646 ctctctctctctgtctctctctctc--tctcacgtccttt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110732400 38 - 189454096 ctctctctctctgtctctctctctc--tctcacgtccttt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13298892 38 + 26754465 ctctctctctctctctctctctctc--tctcacgtccttt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4200443 38 - 5137665 ctctctctctctctgtctctctctc--tctcacgtccttt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122910068 38 - 135778131 ctctctctctctgtctctctgtctc--tctcacgtccttt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2022131 38 + 2427316 ctctctctctgtctgtctctctctc--tctcacgtccttt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1317392 38 + 1448899 ctctctctctctctctctctctctc--tctcatgtccttt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53027488 17 - 190850796 --------------------TCCTT--TGACATGTAACT- i calJac3.chr3 I 3 C 0 s saiBol1.JH378162 8187697 22 - 15139346 ---------------cacaTTCCTT--TGACATGTAACT- i saiBol1.JH378162 I 5 C 0 s proCoq1.NW_012140747v1 1877256 31 + 4188776 ---------TCTCTCTCACACACACCtatccatgtccttt i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8623612 29 + 8790067 ---------TCTTTCTTTCACTCAC--ATCCGTGTCTTTT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76423450 38 + 151834684 ctctctctccttccttctctctgtc--tctgctctcCTCA i mm10.chr5 C 0 I 19 s canFam3.chr13 48010929 38 + 63241923 CTCTGTCTTTCACTCATACACACAC--ACTCATGTCCTTT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4100393 12 - 5279953 ----------------------------GTCACAGCCTTT i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790329 100 + 3286835 I e aotNan1.NW_018493494v1 9389436 21 - 11631747 I e cebCap1.NW_016107439v1 6973703 72 - 7304997 I a score=1580878.000000 s hg38.chr4_KI270787v1_alt 71395 124 + 111943 gacatgtaactttgcagtgccacccatgaaagagagagtatatttcccac-----ccc-------tggactttgggtttgccatgaaattttctttggtcaatgag-atattagtggatgtgacacaagaagTGTGC s panTro5.chr4 119636069 124 - 194502333 gacatgtaactttgcagtgccacccatgaaagagagagtatatttcccac-----ccc-------tggactttgggtttgccatgaaattttctttggtcaatgag-atattagcggatgtgacACAAGAAGTGTGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121049483 124 - 195804263 gacatgtaactttgcagtgccacccatgaaagagagagtatatttcccac-----ccc-------tggactttgggtttgccatgaaattttctttggtcaatgag-atattagcggatgtgacACAAGAAGTGTGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4480729 124 - 17550833 gacatgtaactttgcagtgccacccatgaaagagagagtatatttcccac-----ccc-------tggagtttgggtttgccatgaaattttctttggtcaatgag-atattagtggatgtgacacaagaagTGTGC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69354126 123 - 118206036 gacatgtaactttgcagtgccgcccatgaaagagagagtatatttcccac-----ccc--------ggactttgggtttgccatgaaattttctttggtcaataag-atattagcagatgtgacACAAGAATTGTGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111563249 118 - 190429646 gacatgtaactttgcagtgcctcccatgaaagacagagtatatttcccac-----ccc-------tggactttgagtatgccatgaaattttctttggtcaatgag-acattaacagatgtgacac------tgtgc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110732438 118 - 189454096 gacatgtaactttgcagtgcctcccatgaaagacagagtatatttcccac-----ccc-------tggactttgagtatgccatgaaattttctttggtcaatgag-acattagcagatgtgacac------tgtgc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13298930 118 + 26754465 gacatgtaactttgcagtgcctcccatgaaagacagagtatatttcccac-----ccc-------tggactttgagtatgccatgaaattttctttggtcaatgag-acattagcagatgtgacac------tgtgc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4200481 124 - 5137665 gacatgtaactttgcagtgcctcccatgaaagacagagtatatttcccac-----ccc-------tggactttgagtatgccatgaaattttctttggtcaatgag-acattagcagatgtgacACAAGAATTGTGC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122910106 118 - 135778131 gacatgtaactttgcagtgcctcccatgaaagacagagtatatttcccac-----cct-------tggactttgagtatgccatgaaattttctttggtcaatgag-acattagcagatgtgacac------tgtgc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2022169 124 + 2427316 gacatgtaactttgcagtgcctcctatgaaagacagagtatatttcccac-----ccc-------tggactttgagtatgccatgaaattttctttggtcaatgag-acattagcagatgtgacACAAGAATTGTGC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1317430 124 + 1448899 gacatgtaactttgcagtgcctcccatgaaagacagagtatatttcccac-----ccc-------tggattttgagtatgccatgaaattttctttggtcaatgag-acattagcagatgtgacACAAGAATTGTGC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53027505 124 - 190850796 GACATGTAACTTTTCAGCACCTCCCATGAAAGAGAGAGTACAGTTTCTGC-----CCC-------TGGACTTTGGGTTTGCCATGAAATTTTCTTTGGTCAATGAG-ATATTAGTGGATGTGACACAAGAATTGTGC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8187719 124 - 15139346 GACatgtaatttttcagcgcctcccatgaaagagagagtacatttcctgc-----ccc-------tggactttgggtttgccatgaaattttctttggtcaatgag-atattagtggatgtgacACAAGAATTGTGC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6973775 124 - 7304997 GACATGTAACATTTCAGCACCTCCCTTGAAAGAGAGAGTACATTTCCTGC-----TTC-------TTGACTTTGGATTTGCCATGAAATTTTCTTTGGTCAATGAG-ATATTAGTGGATGTGACACAAGAATTGTGC i cebCap1.NW_016107439v1 I 72 C 0 s aotNan1.NW_018493494v1 9389457 124 - 11631747 GACATGTAACTTTTCAGCGCTTCCCATGAAACAGAGAGTACATTTCCTGC-----CCC-------TGGACTTTGGGTTTGCCATGAAATTTTCTTTGTTCAATGAG-ATATTAGTAGATATGACACAAGAATTGTGC i aotNan1.NW_018493494v1 I 21 C 0 s proCoq1.NW_012140747v1 1877287 121 + 4188776 gacacgtaactttgcagtacctcccacaaaagagaaagtatatttcccac-----tct-------tagactttgggtttgccatgaaattttctttggtcaatggg-atatt-gtagatgtgacA--AGAATTTTGT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8623641 121 + 8790067 GACACATAGCTTTGCAGTACCATCCACAAAAAAGACAGGGCATATTCCAC-----TCT-------TCGATTTTGGGTTTCTCCTGAAATTTTCTCTGGTCCATGGG-CTATT-GCAGGTGTGACG--AGGATGATGC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76423507 130 + 151834684 GACAGACAACTTCACAGAACCTTCCATTAAAGAGGACATACTTTCCCCAG-----TCATAGATCATGGGCTTCAGGTTTACCATGAGCGTTTCCTTGGTCATCAGA-ATGCCAGAGGCTACAACTTGACAG-TGTCT i mm10.chr5 I 19 C 0 s canFam3.chr13 48010967 107 + 63241923 --CCTTTGACAAATCACTAATTCCCCTCAAAGAGGAAGTGTATTTCCCTA-----CCT------------CCTGAATTTGCCCTGAGATTATCTTCAGTTGATGGG-ATGTCAGCTG-TATGACA---------TGC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4100405 130 - 5279953 AGCAAATAACTTTACAGTTCCTCCCATGACAGCAAGAGTATATTTCTCTCATCGTTCT-------TGGACTGTAGTTTTACCATGAAATTTTTTTTGGCCAATCCGCGTGTTAGTAGATGTGACACAAGAATTCTGC i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790329 100 + 3286835 I a score=1116313.000000 s hg38.chr4_KI270787v1_alt 71519 75 + 111943 TCAAATACATA-----GGTACA-CC-TCTTGTGC-TCTGCCGTTGCCTATTGGTGTCTGGTCCCAAGAGGTGAATGAGAGACA-- s panTro5.chr4 119636193 75 - 194502333 TCAAATACATA-----GGTACA-CC-TCTTGTGC-TCTGCCGTTGCCTATTGGTGTCTGGTCCCAAGAGGTGAATGAGAGACA-- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121049607 75 - 195804263 TCAAATACATA-----GGTACA-CC-TCTTGTGC-TCTGCCGTTGCCTATTGGTGTCTGGTCCCAAGAGGTGAATGAGAGACA-- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4480853 75 - 17550833 TCAAATACATA-----GGTACA-CC-TCTTGTGC-TCTGCCGTTGCCTATTGGTATCTGGTCCCAAGAGGTGAATGAGAAACA-- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69354249 75 - 118206036 TCAAATACATA-----GGTACA-CC-TCTTGTGT-TCTGCCATTGCCTGTTGATGTCTGGTCCCAAGAGGTGAATGAGAGACA-- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111563367 75 - 190429646 TCAAATACATA-----GGTATA-TC-TCTTGTGC-TCTGCCATTGCCTATTGGTGTCTGGTCCCAAGAGGTGAATGAGGGACA-- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110732556 75 - 189454096 TCAAATACATA-----GGTATA-TC-TCTTGTGC-TCTGCCATTGCCTATTGGTGTCTGGTCCCAAGAGGTGAATGAGGGACA-- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13299048 75 + 26754465 TCAAATACATA-----GGTATA-TC-TCTTGTGC-TCTGCCATTGCCTATTGGTGTCTGGTCCCAAGAGGTGAATGAGGGACA-- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4200605 75 - 5137665 TCAAATACATA-----GGTATA-CC-TCTTGTGC-TCTGCCATTGCCTATTGGTGTCTGGTCCCAAGAGGTGAATGAGGGACA-- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122910224 75 - 135778131 TCAAATACATA-----GGTATA-CC-TCTTGTGC-TCTGCCATTGCCTATTGGTGTCTGGTCCCAAGAGGTGAATGAGGGACA-- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2022293 75 + 2427316 TCAAATACATA-----GGTATA-CC-TCTTGTGC-TCTGCCATTGCCTATTGGTGTCTGGTCCCAAGAGGTGAATGAGGGACA-- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1317554 75 + 1448899 TCAAATACATA-----GGTATA-CC-TCTTGTGC-TCTGCCATTGCCTATTGGTGTCTGGTCCCAAGAGGTGAATGAGGGACA-- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53027629 75 - 190850796 TCAAATACATA-----GGTACA-CC-TCTTGTGC-TCTGCCACTGCCTATTGGTGTCTGGTTCCAAGAGGTGAATGAGAGACA-- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8187843 75 - 15139346 TCAAATACATA-----GGTACA-CC-TCTTGTGC-CCTGCCATTGCCTATTGGTGTCTGGTTCCAAGAGGTGAATGAGAGACA-- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6973899 75 - 7304997 TCAAATACATA-----GGTACA-CC-TCTTGTGC-TCTGCCATTGCCTATTGGTGTCTGGTTCCAAGAGGTGAATGAGAGACA-- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9389581 74 - 11631747 TC-AATACATA-----GGTACA-CC-TCTTGTGC-TCTGCCATTGCCTATTGGTGTCTGGTTCCAAGAGGTGAATGAGAGACA-- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1790429 76 + 3286835 TCAAATGCTTA-----GGTACAGCC-TCTTGTGC-TCTGTCATTGCCAGTCGGTGCCTGGTCCCAAGAGGAGACTAAGAGACA-- i micMur3.chrUn_NW_017968520v1 I 100 I 1447 s proCoq1.NW_012140747v1 1877408 75 + 4188776 TCAAATGCTTA-----GGTACAGCC-TCTTGTGC-TCTGTCATTGTCTGTCAGTGCCTGGTCCCAAGAGGAGAATAAGAGAA--- i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8623762 76 + 8790067 CCTTGTGTGCA-----GGTCTTGCC-TTCTGTGC-TCTGTTGCTTCCTGCTGGTGCCTGGTCCCCAGGGGAGAATAAGAGACA-- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76423637 77 + 151834684 CCAAATGCACAGCTCTGGTCTA-TC--CTGGTGT-TCCTCCA-TGCCTATCAGTGACTGATCTCAAGA-GCCAAGGAGAGGCA-- i mm10.chr5 C 0 C 0 s canFam3.chr13 48011074 65 + 63241923 --------TTA-----GATCTGCCC-TCTTGTG---CTGCCATTGTCTGTTGGTGACTG-TGCCACCAAAAGAATGAGAGGCC-- i canFam3.chr13 C 0 I 2 s dasNov3.JH568349 4100535 78 - 5279953 -TCTAGGTGTA-----GGTATG-CTGTCTTGTGCTTCTGCTATTACCTGTTGCTGACTGGTCCCAAGAGGAGAATGAGAGATACA i dasNov3.JH568349 C 0 C 0 a score=2857450.000000 s hg38.chr4_KI270787v1_alt 71594 231 + 111943 AAGGGCAGA-----ATGTCCCCACACCACCCTGCCACATGAAGCCAAGCTGCCCAGTCCACAGAGCCTGCATCAGCCAGTCCCCAC-CCAACCTGCAGGCATGTGAACAAACCAGCTTCAATTGGCAGAACTGCCCTGGCTGCCTGGCAGCCCCATG--AGAAAAAGAGCTGTTTTATACCTGA-------GTTTTCAGTGCATTTTG-----TTACTCAGTATTATTGTGCCAATATCTAACCA-----------------------TTACca--------------------------------------- s panTro5.chr4 119636268 231 - 194502333 AAGGGCAGA-----ATGTCCCCACGCCACCCTGCCACATGAAGCCAAGCTGCCCAGTCCACAGAGCCTGCATCAGCCAGTCCCCAC-CCAACCTGCAGGCATGTGAACAAACCAACTTCAATCGGCAGAACTGCCCTGGCTGCCTGGCAGCCCCATG--AGAAAAAGAGCCGTTTTATACCTGA-------GTTTTCAGTGCATTTTG-----TTACTCAGTATTATTGTGCCAATATCTAACCA-----------------------TTACca--------------------------------------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121049682 231 - 195804263 AAGGGCAGA-----ATGTCCCCACGCCACCCTGCCACATGAAGCCAAGCTGCCCAGTCCACAGAGCCTGCATCAGCCAGTCCCCAC-CCAACCTGCAGGCATGTGAACAAACCAACTTCAATCGGCAGAACTGCCCTGGCTGCCTGGCAGCCCCATG--AGAAAAAGAGCTGTTTTATACCTGA-------GTTTTCAGTGCATTTTG-----TTACTCAGTATTATTGTGCCAATATCTAACCA-----------------------TTACca--------------------------------------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4480928 231 - 17550833 AAGGGCAGA-----ATGTCCCCACGCCACCCTGCCACATGAAGCCAAGCTGCCCAGTCCACAGAGCCTGCATCAGCCAGTCCCCAC-CCAACCTGCAGGCATGTGAACAAACCAGCTTCAATCGGCAGAACTGCCCTGGCTGCCTGGCAGCCCCATG--AGAAAAAGAGCTGTTTTATACCAGA-------GTTTTCAGTGCATTTTG-----TTACTCAGTATTATTGTGCCAATATCTAACCA-----------------------TTACca--------------------------------------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69354324 231 - 118206036 AAGGGCAGA-----ATGTCCCCACGCCACCCTGCCACATGAAGCCAAGCTGCCCAGTCCACAGAGCCTGCATCAGCCAGTCTCCAC-CCAACCTATAGGCATGTGAACAAACCAGCCGCAATCGGCAGAACTGCCCTGGCTGCTTGGCAGCCCCATG--AGAAAAACAGCTGTTTTATACCAGA-------GTTTTCAGTGCCTTTTG-----TTACTCAGTATTACTGTGCCAATATCCAGCCA-----------------------TTACca--------------------------------------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111563442 231 - 190429646 AATGGCAGA-----ATGTCCCCATGTGACCCTGCCACATGAAGCTAAGCTGCCCAGTCCACAGAGCCTGCATCAGCCAGTCCCCAC-CCAACCTGCAGGCATGTGAGCAAGCCAGCTTCAATCGGCAGAACTGCCCTAGCTGCCTGGCAGCCCCATG--AGAAAAAGAGCTGTTTTACACCAGA-------GTTTTCAGTGCATTTTG-----TTACCCAGTATTATTGTGCCAATATCTAACCA-----------------------GTACca--------------------------------------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110732631 231 - 189454096 AATGGCAGA-----ATGTCCCCATGTGACCCTGCCACATGAAGCTAAGCTGCCCAGTCCACAGAGCCTGCATCAGCCAGTCCCCAC-CCAACCTGCAGGCATGTGAGCAAGCCAGCTTCAATCGGCAGAACTGCCCTAGCTGCCTGGCAGCCCCATG--AGAAAAAGAGCTGTTTTACACCAGA-------GTTTTCAATGCATTTTG-----TTACCCAGTATTATTGTGCCAATATCTAACCA-----------------------GTACca--------------------------------------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13299123 231 + 26754465 AATGGCAGA-----ATGTCCCCATGTGACCCTGCCACATGAAGCTAAGCTGCCCAGTCCACAGAGCCTGCATCAGCCAGTCCCCAC-CCAACCTGCAGGCATGTGAGCAAGCCAGCTTCAATCGGCAGAACTGCCCTAGCTGCCTGGCAGCCCCATG--AGAAGAAGAGCTGTTTTACACCAGA-------GTTTTCAGTGCATTTTG-----TTACCCAGTATTATTGTGCCAATATCTAACCA-----------------------GTACca--------------------------------------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4200680 231 - 5137665 AATGGCAGA-----ATGTCCCCGTGTCACCCTGCCACATGAAGCTAAGCTGCCCAGTCCACACAGCCTGCATCAGCCAGTCCCCAC-CCAACCTGCAGGCATGTGAGCAAGCCAGCTTCAATCAGCAGAACTGCCCTAGCTGCCTGGCAGCCCCATG--AGAAAAAGAGCTGTTTTACACCAGA-------GTTTTCAGTGCATTTTG-----TTACCCAGTATTATTGTGCCAATATCTAACCA-----------------------GTACca--------------------------------------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122910299 231 - 135778131 AATGGCAGA-----ATGTCCCCATGTGACCCTGCCACATGAAGCTAAGCTGCCCAGTCCACAGAGCCTGCATCAGCCAGTCCCCAC-CCAACCTGCAGGCATGTGAGCAAGCCAGCTTCAATCGGCAGAACTGCACTAGCTGCCTGGCAGCCCCATG--AGAAAAAGAGCTGTTTTACACCAGA-------GTTTTCAGTGCATTTTG-----TTACCCAGTATTATTGTGCCAATATCTAACCA-----------------------GTACca--------------------------------------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2022368 231 + 2427316 AATGGCAGA-----ATGTCCCCATGTGACCCTGCCACATGAAGCTAAGCTGCCCAGTCCACAGAGCCTGCATCAGCCAGTCCCCAC-CCAACCTGCAGGCATGTGAGCAAGCCAGCTTCAATCGGCAGAACTGCCCTAGCTGCCTGGCAGCCCCATG--AGAAAAAGAGCTGTTTTACACCAGA-------GTTTTCAGTGCATTTTG-----TTACCCAGTATTATTGTGCCAATATCTAACTA-----------------------GTACca--------------------------------------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1317629 231 + 1448899 AATGGCAGA-----ATGTCCCCATGTCACCCAGCCACATGAAGCTAAGCTGCCCAGTCCACAGAGCCTGCATCAGCCAGTCCCCAC-CCAACCTGCAGGCATGTGAGCAAGCCAGCTTCAACTGGCAGAACTGCCCTAGCTGCCTGGCAGCCCCATG--AGAAAAAGAGCTGTTTTATACCAGA-------GTTTTCAGTGCATTTTG-----TTACCCAGTATTATTGTGCCAATATCTAACCA-----------------------GTACca--------------------------------------- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53027704 229 - 190850796 AGGAGCAGA-----ATGTCCCCAAGTCACCCTGCCACGTTAAGCAAAACTGCCCAGTCCACAGAGCCTGCATTAGCCAGTTCCCAT-CCAACTTGCAGGCATGTGAGCAAACCCGCTTCAATTGGCAGAACTGCCCTGGCTGCCTGGAAG-CCCATG--AAAAAAAGAGCTGTTTTATACCAGA-------GTTTTCAGTGTG-TTTG-----TTATTCAGTAGTACTGTGGCAATATCTAATCA-----------------------GTACca--------------------------------------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8187918 230 - 15139346 AGGAGCAGA-----ATGTCTCCAAGTCACCCTACCACGTTAAGCAAAGCTGCGCAGTCCACAGAGGCTGCATCACCCAGTCCCCAC-CCAACTTGCAGGCATGTGAGCAAACCCACTTCAATTGACAGAACTGCCCTGGCTGCCTGGAAGTCCCATG--AAAAAAGGAGCTGTTTTATACCAGA-------GTTTTCAGTGTG-TTTG-----TTACTCAGTAGTACTGTGGCAATATCTAATCA-----------------------GTACCA--------------------------------------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6973974 230 - 7304997 AGGAGAAGA-----ATGTCCCCAAGTCACCCTGCCACGTTAAGCAAAGCTGCCCAGTCCACGGAGGCTGCATCAGCCAGTCCCCAC-CCAACTTGCAGGCATGTGAGCAAACCCACTTCAATCGGCAGAACTGCCCTGGCTGCCTGGAAGCCCCATG--AACAAAAGAGCTCTTTTATACCAGA-------GTTTTCAGTGCG-TTTG-----TTACCCAGTAGTACTGTGGCAATATCTAATCA-----------------------GTACCA--------------------------------------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9389655 232 - 11631747 AGGAGCAGA-----ATGTCCCCAAGTCACCCTGCCATGTTAAGCAAAGCTGCCCAGTCCACAGAGGCTGCATCAGCCAGTCCCCAC-CCAACTTGCAGGCATGTGAGCAAACCCGCTTCAATCGGCAGAACTGCCCTGGCTGCCTGGAAGCCCCATGAAAAAAAAAGAGCTGTTTTATACCAGA-------GTTTTCAGTACG-TTTG-----TTACTCAGTAGTACTGTGGCAATATCTAATCA-----------------------GTACCA--------------------------------------- i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1877483 221 + 4188776 ATGGGCAGA-----ACCTCCCCAAGCCAACCTGCTGCATGAAGCAAAGCTGCCCAATCCCTAGAGTCTAGA--------TCCCCAC-ACAACCCGCAGGCACGTGAACAACC-AGCTTAAACTGGCAGAGCTGCCTTGGCTGACTAAAAGGGCCAGG--AGAAAAAGAGTTGTTTTAAACCAGA-------GTTTTTAGGATCTTTT------TCACTCAGTATTATTATGGCAATAGCTAACCA-----------------------ATACCA--------------------------------------- i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8623838 199 + 8790067 CAGGGCAGA-----ACATCCCCAAGCCAACCTGCTGCATGAAGCAGAGCTGCCCCACCCCTACAGCCAGGA--------CCC---C-ACAACCTGCACA-ATGGGAGCAAAC------------------------CAGTCGACCAGCAGCTCCATG--AG-AAAAGAGACATTTTAAGTCAGA-------GGTTGTAGGATATTTTGTTTTCTTACTCAGTGTTATTGTGGCAATATCTAACCA-----------------------ATACCT--------------------------------------- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76423714 183 + 151834684 ---AGCAGAACTGCACATCCCCAAGGCACCC--------GAAGCAAAGCCATCCCGTACACAGAACCTCTAGCAGCCAGTACTCGC-CTACCCAACACCTATGTGGGCCAAACAGATG---------------------------AGCAACCCCA----AGAGAAAGAAATGTGTGAAACCAGA-------GTTTGCAGGGTATAT-------CTAGACAGAATGATTGCAGTTAAATCA------------------------------------------------------------------------- i mm10.chr5 C 0 C 0 s canFam3.chr13 48011141 238 + 63241923 TGGAGCAGA-----ACGGCCCCAAGCAAACCTGCTGTGTGAAGCAGAGC-GCCCTGTCCATGCAACCTAGATAAGCCAGCCCCCCTGCCAACCCACACACATGTGAGCAAACCAACTGGGATCAGCAGAGCTGCCCTGGATAGCTAGTAGATCTGTG--AGGAAAAGAGTTGTTTTAAGGCAGATTTTTTTTTTTTTAGGGTGGCTTG-----TTACTCAGTATCACCCCGGGAATATGTAACCA-----------------------ACACTG--------------------------------------- i canFam3.chr13 I 2 C 0 s dasNov3.JH568349 4100613 287 - 5279953 AGAAGCAGA-----ACAGCCCAGAGCCAGCCTACAATGTGAAGCAGAGCTGCCCAAT-CACATAGACATGATCAGCCAATCCCCAG-CCAACCTGCAGGCCTCTGAGCAAACCAACCAAGATCAGCAG--TCTCCCAGGCTGACTAGCAGATCC-TG--AGAAAAAGAGTTGTTTTAGGCCAGA-------CTCTTCAG-ATGACTTG-----TTATGCAGT-CTGTTGTGGCAGTCTCTAACCAACATagatcttgtagggctttgtgcaccacagttagtgcttgttttacttctaggagaggctttacaa i dasNov3.JH568349 C 0 I 219 e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I a score=278966.000000 s hg38.chr4_KI270787v1_alt 71825 22 + 111943 atggtgacactttagatttttg s panTro5.chr4 119636499 22 - 194502333 atggtgacactttagatttttg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121049913 22 - 195804263 atggtgacactttagatttttg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4481159 22 - 17550833 atggtgacactttagatttttg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69354555 22 - 118206036 atggtgacactttaggtttttg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111563673 22 - 190429646 atggtgacactttagatttttg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110732862 22 - 189454096 atggtgacactttagatttttg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13299354 22 + 26754465 atggtgacactttagatttttg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4200911 22 - 5137665 atggtgacactttagatttttg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122910530 22 - 135778131 atggtgacactttagatttttg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2022599 22 + 2427316 atggtgacacttgagatttttg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1317860 22 + 1448899 atggtgacactttagatttttg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53027933 22 - 190850796 atggtgacactttcaacttttg i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8188148 22 - 15139346 ATGGTGACACTTTTgatttttg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6974204 22 - 7304997 ATGGTGACACTTTCgatttttg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9389887 22 - 11631747 ATGGTGACACTTTCTAtttttg i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1877704 22 + 4188776 ATAGTGATACCTTACAtttttt i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8624037 20 + 8790067 ACA--GATAtctgacatttttg i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48011379 16 + 63241923 ATGGTG------TAGAGCTTTG i canFam3.chr13 C 0 I 328 s dasNov3.JH568349 4101119 22 - 5279953 atgatgacatcttaggtttttt i dasNov3.JH568349 I 219 C 0 e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76423897 0 + 151834684 C a score=2186234.000000 s hg38.chr4_KI270787v1_alt 71847 181 + 111943 acttgcatcggattacggtg-aaattactgaaattaagaagttccagcagagaagcagtttggggagaacactagagttctcttttggctgtgttgactatgaggtgcTAATCtaacagacagttggggggaatattctcttgttatcttggaattgccagcaagacttgtactgaaaagaa s panTro5.chr4 119636521 181 - 194502333 acttgcatcggattatggtg-aaattactgaaattaagaagttccagcagagaagcagtttggggagaacactagagttctcttttggctgtgttgactatgaggtgcTAATCtaacagacagttggggggaatattatcttgttgtcttggaattgccagcaagacttgtactgaaaagaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121049935 181 - 195804263 acttgcatcggattatggtg-aaattactgaaattaagaagttccagcagagaagcagtttggggagaacactagagttctcttttggctgtgttgactatgaggtgcTAATCtaacagacagttggggggaatattctcttgttgtcttggaattgccagcaagacttgtactgaaaagaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4481181 180 - 17550833 acttgcatcggattatggtg-aaattactgaaattaagaagttccagcagagaagcagtttggggagaacactagagttctcttttggctgtgttgactatgaggtgcTAATCtaacagacagtt-gggggaatactctcttgttgtcttggaattgccagcaagacttgtactgaaaagaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69354577 181 - 118206036 acttgcataggattatggtg-aaattactgaaattaagaagttccagcagagaagcagtttggggagaacaccagagttctcttttggctgtgctgactatgaggtgcTAATCtaacagacagttgggggaaatattctcttgttgtcttggaattgccagcaagacttgtactgaaaagaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111563695 182 - 190429646 acctgcacaggattatggtgccacttactgaaattaagatgttccagcagagaaacagtttggggagaaaacaagaattctcttttggctgtgttgactatgaggtgcTAATCtaacaaacagttgggggaaatattctcttgttgacttggaattgccagcaaggcttatactgaaaagaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110732884 182 - 189454096 acctgcacaggattatggtgccacttactgaaattaagatgttccagcagagaaacagtttggggagaaaacaagaattctcttttggctgtgttgactatgaggtgctaatctaacaaacagttggggGAAATATTCTCTTGTTGACTTGGAATTGCCAGCAAGGCTTATACTGAAAAGAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13299376 182 + 26754465 acctgcacaggattatggtgccacttactgaaattaagatgttccagcagagaaacagtttggggagaaaacaagaattctcttttggctgtgttgactatgaggtgcTAATCtaacaaacagttgggggaaatattctcttgttgacttggaattgccagcaaggcttatactgaaaagaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4200933 182 - 5137665 acctgcacaggattatggtgccacttactcaaattaagatgttccagcagagaaacagtttggggagaaaacaagaattctcttttggctgtgttgactatgaggggcTAATCtaacaaacagttgggggaaatattctcttgttgacttggaattgccagcaaggcttatactgaaaagaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122910552 182 - 135778131 acctgcacaggattatgatgccacttactgaaattaagatgttccagcagagaaacagtttggggagaaaacaagaattctcttttggctgtgttgactatgaggtgctaatctaacaaacagttggggGAAATATTCTCTTGTTGACTTGGAATTGCCAGCAAGGCTTATACTGAAAAGAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2022621 182 + 2427316 acctgcacaggattatggtgccacttactgaaattaagatgttccagcagagaaacagtttggggagaaaacaagaattctcttttggctgtgttgactatgaggggcTAATCtaacaaacagttgggggaaatattctcttgttgacttggaattgccagcaaggcttatactgaaaagaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1317882 182 + 1448899 acctgcacaggattttggtgccacttactgaaattaagatgttccagcagagaaacagtttggggagaaaacaagagttctcttttggctgtgttgactatgaggtgcTAATCtaacaaacagttgggggaaatattctcttgttgacttgaaattgccagcaaggcttatactgaaaagaa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53027955 178 - 190850796 acttgtgcaggatcatagtgccacttactg-aattaaggagttccaacagaaaagcagtttggggagaaaactagagttctcttttggctgcgttgactatgaggtgcTAATCtaacagacagttgtggggaatattctct---tgtcttggagtggccagcaagacttgtactgaaaagaa i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8188170 181 - 15139346 acttgtgcaggattatagtgccacttactg-aattaagaagttctaacagaaaagcagtttggggagaaaactagagttctcttttggctgtgttgactttgaggtgcTAATCtaacagacagttgtggggaatattctgttgctgtcttggagtagccagcaagacttgtacgaaaaagaa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6974226 181 - 7304997 acttgtgcaggatgatagtgccacttactg-aattaagaagttctaacagaaaagcagtttggggagaaaactagagttctcttttggctgcgttgactttgaggtgctaatctaacagacaGTTGCGGGGAATATTCTGTTGTTGTCTTGGAGTGGCCAGCAAGACTTGTACTGAAAAGAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9389909 181 - 11631747 acttgtgcaggattatagtgccacttactg-aattaagaagttctaacagaaaagcagtttggggagaaaactagagttctcttttggctgcgttgactatgaggtgcTAATCtaacagacagttgcggggaatattctcttgttgtcttggagtggccagcaagacttgtactgaaaagaa i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1877726 180 + 4188776 acttgagcaggattatggtgtcatttactgaaatgaggaggttctagaagaggagcaggttgcagaaaaaactagagttctgttttggctgtgttgaatttgaggtgcccatCTAATAGACCGTTGGAGG--ATGTTCTCTTATTGTCTTGGAATCACCAATAAGGCTTGCACTGAAAAGCA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8624057 180 + 8790067 acctgagcaggatgatagtgtcacttaatgaaatgcagaagttctagaaggggagcaggttgaggaaaaaac-agagttttgtttgggctgtgctgagtttggggtgtcaattaagcaGATCACTGGGGG-AATGTTTTCTTATTGTCTTAGAATCACCAGTAAGGCATGCCCTGAAAAGAA i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4101141 180 - 5279953 acttgagcaggataatgatgtcatttacagaaatgagggaattctggaagatgaaaatttgggggagaaaatcagagttctgttttggctgtgttaagtttgaggtgcttatctaacaAACAGTTAGggg--actgtctcctattgttttggaattgtaggtaaggcttctactgaatataa i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76423897 0 + 151834684 C e canFam3.chr13 48011395 328 + 63241923 I a score=5605588.000000 s hg38.chr4_KI270787v1_alt 72028 455 + 111943 aaggtcctcagga-ccccacattctaaagatagtcaccaatgaaccac-cagcat-tgtgacccaagatgatccccacagggctcac----taagagaagccagaactca-tccaccaccttccaactcccttcctcctacctgaagtcat---aagagaatga---ctagaggga-ctgggaggttggccctgtggacagagcagtgatggtggagaga---ctct-ccttctggggagggggtgcttttcctagcttaaggcaagtaagtgatgggaggcttcaagagaaactcACAATGGAG-CAGCATCACTTTGAGCTGCCTTTGC---AAGAAGGATACCAATCTTTTGTTCCCTG----ACTG---ATTGCTTGCTGCAAGCCTATTAGGAGAT---ACT--------------------------------------------------GGTGGAGCAGAGTGTGGTGAATGAGATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTCTGGTCTTCTA-----------------GAGACTGGTG s panTro5.chr4 119636702 455 - 194502333 aaggtcctcagga-ccccatattctaaagatagccaccaatgaaccac-cagcat-tgtgaccaaagatgatccccacagggctcac----taagagaagccagaactca-tccaccaccttccagctcccttcctcctacctgaagtcat---aagagaatga---ctagaggga-ctgggaggttggccctgtggacagagcagtgatggtggagaga---ctct-ccttctggggagggggtgcttttcctagcttaaggcaagtaagtgatgggaggcttcaagagaaactcacaatggag-cagcatcactttgagctgcctttgc---aagaaggataccaatcttttgttccctg----actg---agtgcttgctgcaggcCTATTAGGAGAT---ACT--------------------------------------------------GGTGGAGCAGAGTGTGGTGAATGAGATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTCTGGTCTTCTA-----------------GAGACTGGTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121050116 455 - 195804263 aaggtcctcagga-ccccatattctaaagatagccaccaatgaaccac-cagcat-tgtgaccaaagatgatccccacagggctcac----taagagaagccagaactca-tccaccaccttccagctcccttcctcctacctgaagtcat---aagagaatga---ctagaggga-ctgggaggttggccctgtggacagagcagtgatggtggagaga---ctct-ccttctggggagggggtgcttttcctagcttaaggcaagtaagtgatgggaggcttcaagagaaactcacaatggag-cagcatcactttgagctgcctttgc---aagaaggataccaatcttttgttccctg----actg---agtgcttgctGCAGGCCTATTAGGAGAT---ACT--------------------------------------------------GGTGGAGCAGAGTGTGGTGAATGAGATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTCTGGTCTTCTA-----------------GAGACTGGTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4481361 455 - 17550833 aaggtcctcagga-ccccacattctaaagatagccaccaatgaaccac-cagcat-tgtgaccaaagatgatccccacagggctcac----taagagaagccagaactca-tccaccaccttccaactcccttcctcctacctgaagtcat---aagagaatga---ctagaggga-ctgggaggttggccctgtggacagagcagtgatggtggagaga---ctct-ccttctggggagggggtgcttttcctagcttaaggcaagtaagtgatgggaggcttcaagagaaactcacaatggag-cagcatcactttgagctgcctttgc---aagaaggataccaatcttttgttccctg----gctg---agtgcttgctGCAGGCCTATTAGGAGAT---ACT--------------------------------------------------GGTGGAGCAGAGTGTGGTGAATGAGATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGCCTCTGGTCTTCTA-----------------GAGACTGGTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69354758 455 - 118206036 aaggtcctcagga-ccccacattctaaagatagccaccaatgaaccac-cagcat-tttgaccagagatgatccccacggggctcac----taagagaagccagaactca-tccaccaccttccaactcccttcctcctacctgaagtcat---aagagaatga---ctagaggga-ctgggaggttggccttgtggacagagcagtgatggtggagaga---tgct-ccttctcgggagggggtgcttttcctagcttaaggcaagtaagtgatgggaggcttcaagagaaactcccgatggag-cagcatcactttgagctgcctttgc---aagaaggataccaatcttttgttccctg----gctg---agtgcttgctGCAGGCCCATTAGGAGAT---ACT--------------------------------------------------GGTGGAGCAGAGTGTGGTGAATGAGATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTCTGGTCTTCTA-----------------GAGACTGGTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111563877 455 - 190429646 aaggttctcagga-ctccacattctaaaggtagccaccaatgaaccac-gagcat-tgtgaccagaggtgatccccacagggctcac----taagagaagccagaactca-tccaccaccttccaactcccttcctcctatctgaagtcgt---aagagaatga---ctagaggga-ctgggaggttggccttttggacagagcagtgatggtggagaga---tgct-ccttctgggaaggagatgcttttcctagtttaaggcaagtaagtgatgggaggctccaagagaaggtcacgatggag-cagcatcactttgagctgcctttgc---aagaaggataccaatcttttgttccctg----gctg---agtgcttgctGCAGGCCCATTAGGAGAT---ACT--------------------------------------------------GGTGGAGCAGAGTATGGTGAATGATATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTTCAGTCTTCTA-----------------AAGACTGGTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110733066 455 - 189454096 AAGGTTCTCAGGA-CTCCACATTCTAAAGGTAGCCACCAATGAACCAC-GAGCAT-TGTGACCAGAGGTGATCCCCACAGGGCTCAC----TAAGAGAAGCCAGAACTCA-TCCACCACCTTCCAACTCCCTTCCTCCTATCTGAAGTCGT---AAGAGAATGA---CTAGAGGGA-CTGGGAGGTTGGCCTTTTGGACAGAGCAGTGATGGTGGAGAGA---TGCT-CCTTCTGGGGAGGAGATGCTTTTCCTAGTTTAAGGCAAGTAAGTGATGGGAGGCTCCAAGAGAAGGTCACGATGGAG-CAGCATCACTTTGAGCTGCCTTTGC---AAGAAGGATACCAATCTTTTGTTCCCTG----GCTG---AGTGCTTGCTGCAGGCCCATTAGGAGAT---ACT--------------------------------------------------GGTGGAGCAGAGTATGGTGAATGATATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTTCAGTCTTCTA-----------------AAGACTGGTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13299558 455 + 26754465 aaggttctcagga-ctccacattctaaaggtagccaccaatgaaccac-gagcat-tgtgaccagaggtgatccccacagggctcac----taagagaagccagaactca-tccaccaccttccaactcccttcctcctatctgaagtcgt---aagagaatga---ctagaggga-ctgggaggttggccttttggacagagcagtgatggtggagaga---tgct-ccttctggggaggagatgcttttcctagtttaaggcaagtaagtgatgggaggctccaagagaaggtcacgatggag-cagcatcactttgagctgcctttgc---aagaaggataccgatcttttgttccctg----gctg---agtgcttgctGCAGGCCCATTAGGAGAT---ACT--------------------------------------------------GGTGGAGCAGAGTATGGTGAATGATATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTTCAGTCTTCTA-----------------AAGACTGGTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4201115 455 - 5137665 aaggtcctcagga-ctccatattctaaagatagccaccaatgaaccac-gagcat-tgtgaccagaggtgatccccacagggctcac----taagagaagccagaactca-tccaccaccttccaactcccttcctcctatctgaagtcgt---aagagaatga---ctagaggga-ctgggaggttggccttttggacagagcagtgatggtggagaga---tgct-ccttctggggaggagatgcttttcctagtttaaggcaagtaagtgatgggaggctccaagagaaggtcacgatggag-cagcatcactttgagctgcctttgc---aagaaggataccaatcttttgttccctg----gctg---agtgcttgctGCAGGCCCATTAGGAGAT---ACT--------------------------------------------------GGTAGAGCAGAGTATGGTGAATGATATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTTCAGTCTTCTA-----------------AAGACTGGTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122910734 452 - 135778131 AAGGTCCTCAGGA-CTCCATATTCTAAAGATAGCCATCAATGAACCAC-GAGCAT-TGTGACCAGAGGTGATCCCCACAGGGCTCAC----TAAGAGAAGCCAGAACTCA-TCCACCACCTTCCAACTCCCTTCCTCCTATCTGAAGTCGT---AAGAGAATGA---CTAGAGGGA-CTGGGAGCTTGGCCTTTTGGACAGAGCAGTGATGGTGGAGAGA---TGCT-CCTTCTGGGGAGGAGATGCTTTTCCTAGTTTAAGGCAAGTAAGTGACGAGAGGCTCCAAGAGAAGGTCACGATGGAG-CAGCATCACTTTGAGCTGCCTTTGC------AAGGATACCAATCTTTTGTTCCCTG----GCTG---AGTGCTTGCTGCAGGCCCGTTAGGAGAT---ATT--------------------------------------------------GGTGGAGCAGAGTATGGTGAATGACATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTTCAGTCTTCTA-----------------AAGACTGGTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2022803 455 + 2427316 aaggtcctcagga-ctccatattctaaagatagccaccaatgaaccac-gagcat-tgtgaccagaggtgatccccacagggctcac----taggagaagccagaactca-tccaccaccttccaactcccttcctcctatttgaagtcgt---aagagaatga---ctagaggga-ctgggagattggccttttggacagagcagtgatggtggagaga---tgct-ccttctggggaggagatgcttttcctagtttaaggcaagtaagtgatgggaggctccaagagaaggtcacgatggag-cagcatcactttgagctgcctttgc---aagaaggataccaatcttttgttccctg----gctg---agtgcttgctGCAGGCCCATTAGGAGAT---ACT--------------------------------------------------GGTGGAGCAGAGTATGGTGAATGATATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTTCAGTCTTCTA-----------------AAGACTGGTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1318064 455 + 1448899 aaggtctttagga-ttccacattctaaagatagccaccaatgaaccac-gagcat-tgtgaccagaggtgatccccacagggctcac----taagagaagccagaactca-tccactaccttccaactcccttcctcctatctgaagtcgt---aaaagaatga---ctagaggga-ctgggaggttggccttttggacagagcagtgatggtggagaga---tgct-ccttctggggaggagatgcttttcctagtttaaggcaagtaagtgatgggaggctccaagagaaggtcacgatggag-cagcatcactttgagctgcctttgc---aagaaggataccaatcttttgttccctg----gctg---agtgcttgctGCAGGCCCATTAGGAGAT---ACT--------------------------------------------------GGTGGAGCAGAGTGTTGTGAATGAGATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTTCAGTCTTCTA-----------------AAGACTGGTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53028133 453 - 190850796 atggtcctcagga-ccccacattctaaagatagccaccaatgaaccac-cagcat-cgtgactagagatgatccccacaagccttat----taagaggagccagaactca-tctaccaccttccagctcccttccttcttcctgaagccat---aagggaatga---gt--agaga-ctgggaggttggccttgtggacagagcagtgatggtggagaga---tatt-ccttctggggaggaggtgcttttcctagcttaaggcaagtaagtgatgggaggctccaagagaaactcacgatggaa-tagcatcactttgagctgcctttgc---aagaaggataccaatcttttgttccttg----gctg---agtgcttgctgcaggcaCATTAGGAGAT---ACT--------------------------------------------------GGTGGAGCAGAGTGTGGCAAATGAGATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTGCAGTCTTCTA-----------------GAGACTGGTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8188351 452 - 15139346 aaggtcctcagga-ccccacattctaaagatagccactaacgaaccac-cagcat-catgaccagagatgatccccacagggcttat----taagaggagccagaactca-tccaccaccttccaactcccttcctccttcctgaagtcat---aagagaatga---ctagagaga-ctgggaagctggccttgtggacacagcagtgatggtggagaga---ta----ctcctggggaggatacgcttttcctagcttaaggcaagtaagtgatgggaggctccaagagaaactcacgatggag-cagcatcactttgagctgtctttgc---aagaaggataccaatccttcgttccctg----gctg---agtgcttgctgcaggcaCGTTAGGTGAT---ACG--------------------------------------------------GGTGGAGCAAAGTGTGGGGAATGAGATCTGAGAATGGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTGCAGTCTTCTA-----------------GAGACTGGTG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6974407 451 - 7304997 AAGGTCCTCAGGA-CCCCACATTCAAAAGATAGCCACCAATGAACCAC-CAGCAT-TGTGACCAGAGATGATCCCCACAGGGCTTAT----TAAGAGGAGCCAGAACTCA-TCCACCACCTTCCAACTCCCTTCCTCCTTCCTAAAGTCAT---AAGACAATGA---CTAGACAGA-CT-AGAAGTTGGCCTTGTGGACAGAGCAGTGATGGTGGAGAGA---TACT-CCTTCTGGGGAGGAGGTGCTTTTCCTAGCTAAAGGCAAGTAAGTGATGGGAGGCTCGAAGAGAAACTCACAATGGAG-CAGCATCACTTTCAGCTGTCTTTGC------AAGGATACCAATCTTCTGTTCCCTG----GCTG---AGTGCTTGCTGCAGGCACATTAGGAGAT---ATG--------------------------------------------------GGTAGAGCAGAGTGTGGCGAATGAGATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTGCAGTCTTCTA-----------------GAGACTGGTG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9390090 455 - 11631747 aaggtcctcagga-ccccacattctaaagatagccaccaattaaccac-cagcat-tgtgaccagagatgatccccacagggcttac----taagaggagccagaactca-tccatcacctcccagctcccttcctccttcctgaagtcat---aagagaatga---ctagagaga-ctgggaagttggccttgtggacagagcagtgatggtggagaga---tact-ccttctgggaaggaggtgcttttcctagcttaaggcaagtaagtgatgggaggctccaagagaaactcatgatggag-cagcatcactttgagctgtctttgc---aagaaggataccaatcttttgttccctg----gctg---agtgcctgctgcaggcaCATTAGGAGAT---ACT--------------------------------------------------GGTGGAGCAGAGTGTGGCGAATGAGATCTGAGGACAGCTTGA---------------CATCT-------------------------GCCCCTGAAGTCTGCAGTCTTCTA-----------------GAGACTGGTG i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1877906 458 + 4188776 AATGTCCTCAGGAACCCCACATTCTAAAGACAGCCACCAGGGAACCGC-CAGCATCTGTGAccagagacaacccacacagggcttactcagtcagaggaagcagaactgactctaccacttttcaactcccttcctccttcctgtagtcataataggaggatga---ctagagg-a-aaaagacgtcagccttggggacagagcagggatggtggagagaagtttct-ccttct-gggaggaggtacgtttcctagctt----caagcaaatgataggaggctccaagagaaactcacaatggag-caacatcactttgagctgcctttgc---aagaaggagaccaacctcttgttccctg----gctt---aatgcttgctGCAGGCCCACCAGGAGAT---GTT--------------------------------------------------GGGCAAGAAGAGTGTGGTGAATGAGTTCTCAGGAGAGCTTGA---------------CATCT-------------------------GGCCCTGAAGT----TGGCACCCA-----------------GAGACTGGTG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8624237 554 + 8790067 AAGGT---------CCCCACATTGTAGAGAAAGCCACCAACAAGCCAC-CAGCATTTGTAACTAGAGGCAACTCCCACAGGGCTTGC----TCGGAAGAGGCAGGACGGACTCTGCCACCTTCCAGCCCCCTTCCTCCTTCCTGCGGTTATGACAAAAGGATGA---CCAGAAG---CAAAGAGGTTGGCCTC-CAGACAGCACAGTGATGGTGG-GAGAACTTTAT-CCTTCCAGGGAGGAGGTGCTTTTCCTGGCTT----CCAACAAGTGATGGGAGGTTCCAGGAG-AACTCACAGTGGA--CAGCATCACTTCCAGCTGCCTTGGC---AAGGAGCAGACTTGTCTCCTGCTACTTGCTACTCTTGCAACCTCTTGTTGCAAGCCCACTGGGAAAG---GTTTTTTGGggctgggtgtgttggctcacacctgtaatcccagcattctgggaggccaatgtgggtggattgcttgagtt-tgaggccagcctgagcaagagcaagaccccatctatactaaaaatagaaaaactagccaggcacgatggt----gggcacctatagtcccaactactcaggaggctgagg i otoGar3.GL873602 C 0 I 114 s mm10.chr5 76423897 420 + 151834684 AAGGCCCACATGA-CCCCACATTCTGAAGACAGTC-----CGAGCCACAGAGCCT-TGTGACCAGGGATGTCTCCCATAGGATATTC----CAGG------CGGAGCACA-GCTACTACCT-ACAGTCCCATTTCTCCTTCTTACTGCCAT---AGCCGAAGGATCCCTAGAGGAA-GCAGGCTGTCAGCCTTGAAGAGAAATCA-TGGCAGAGGTAAGA---CACTACTTTCTTGGGTATGGAAGATTTTCTC-------------TGACTAGCAGAAAGCTCCAAGAAGAACCTGCAATGGAGTCAACA--------AGCTTCCCTCAGGAGGAGGAGGAGAACAATTTCTTGTTCCTGA----ACTA---AATGTTCACCCTGGGCCCAGTGGAGGCTCTGAAT--------------------------------------------------GGAGAAGCAAAGC------------TTCCTGGGAGGGCATGG---------------CAGTT-------------------------GCTCCCAAA-TGTGTGGTATAGTA-----------------GAAACTGTAG i mm10.chr5 C 0 I 1 s dasNov3.JH568349 4101321 411 - 5279953 -aagtcctcaggttccccaccttctagagaaagtttccaatgaatcac-cagcaactgtggtcagacac-atccccacagggcttaa------agaggaggaagaactggccctaatatttcccaac-actttcttccctcctgtggtcatgggaagaaaagta---ctagagggagaggggaggttggccttgtagggagagcagt-atagtggtgaga--ctgct-ctttctagggagg-ggtgcttttccttacttaaagcaagtg-gtgatgggagactccaagaaaaactcA--ACAAAA-CGGCATCAGTTTGGGCTGCCTTTTT---------GAGACCAGCCTTTTGCGCCCTG----GCTG---AATGCTTTCTGTCAAC-TGCTACGAGCT---TCC--------------------------------------------------GATGAAG--------------TATGTTCTTGGGATTGCTTGC---------------CATCT-------------------------GCCCCT-----------------------------------GAGACTG--- i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e canFam3.chr13 48011395 328 + 63241923 I a score=426356.000000 s hg38.chr4_KI270787v1_alt 72483 34 + 111943 CCCACTTCTGGTCTAGACTTTTCTTGAGCCAGGT s panTro5.chr4 119637157 34 - 194502333 CCCACTTCTGGTCTAGACTTTTCTTGAGCCAGGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121050571 34 - 195804263 CCCACTTCTGGTCTAGACTTTTCTTGAGCCAGGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4481816 34 - 17550833 CCCACTTCTGGTCTAGACTTTTCTTGAGCCAGGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69355213 34 - 118206036 CCCACTTCTGGTCTAGACTTTTCTTGAGCCAGGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111564332 34 - 190429646 CCCACTTGTGGTCTAGACTTTTCTTAAGCCAGGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110733521 34 - 189454096 CCCACTTGTGGTCTAGACTTTTCTTAAGCCAGGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13300013 34 + 26754465 CCCACTTGTGGTCTAGACTTTTCTTAAGCCAGGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4201570 34 - 5137665 CCCACTTGTGGTCTAGACTTTTCTTAAGCCAGGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122911186 34 - 135778131 CCCACTTGTGGTCTAGACTTTTCTTAAGCCAGGT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2023258 34 + 2427316 CCCACTTGTGGTCTAGACTTTTCTTAAGCCAGGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1318519 34 + 1448899 CCCACTTGTGGTCGAGACTTTTCTTAAGCCAGGT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53028586 34 - 190850796 TCCACTTATCATCTAGAGTTTTCTTCAGCCAGGT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8188803 34 - 15139346 TCCACTTATGAGCTAGAGTTTTCTTAAGCCAGGT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6974858 34 - 7304997 TCCACTTCTGATCTAGAGTTTTCTTAAGCCAGGT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9390545 34 - 11631747 TCCACTTATGATCTAGAGTTTTCTTAAGCCAGGT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1878364 34 + 4188776 CCTACTTTGGGTCTAGAGTTTTCCTAAGCTAAGT i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76424318 34 + 151834684 ATCACTTCTGATCTAGAATGTTCTTAAGCCAGAT i mm10.chr5 I 1 C 0 s dasNov3.JH568349 4101732 34 - 5279953 CCCACTTGTGGGCCACAGTTCTCTTAATCCAGGA i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e otoGar3.GL873602 8624791 114 + 8790067 I e canFam3.chr13 48011395 328 + 63241923 I a score=276856.000000 s hg38.chr4_KI270787v1_alt 72517 23 + 111943 GGTCTTCTGGTAT-AGCCTGTATC s panTro5.chr4 119637191 23 - 194502333 GGTCTTCTGGTAT-AGCCTGTATC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121050605 23 - 195804263 GGTCTTCTGGTAT-AGCCTGTATC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4481850 22 - 17550833 GGTCTTCTGGTAT-AG-CGGTATC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69355247 23 - 118206036 GGTCTCCTGGTAT-AGCCTGTATC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111564366 23 - 190429646 GGTCTTCTGGTAC-AGCCTGTATC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110733555 23 - 189454096 GGTCTTCTGGTAC-AGCCTGTATC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13300047 23 + 26754465 GGTCTTCTGGTAC-AGCCTGTATC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4201604 23 - 5137665 GGTCTTCTGGTAT-AGCCTGTATC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122911220 23 - 135778131 GGTCTTCTGGTAT-AGCCTGTATC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2023292 23 + 2427316 GGTCTTCTGGTAT-AGCCTGTATC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1318553 23 + 1448899 GGCCTTCTGGTGT-AGCCTGTATC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53028620 23 - 190850796 GATCTCCTGGTAT-AGCCTGTATC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8188837 23 - 15139346 GGTCTCCTGGTAT-AGCCTGTATC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6974892 23 - 7304997 GGTCTCCTGGTAT-AGCCTGTATC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9390579 23 - 11631747 GATCTCCTGGTAT-AGCCTGTATC i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1878398 23 + 4188776 GGTCTTCTGGTAT-AGCCTGTGTC i proCoq1.NW_012140747v1 C 0 I 53 s otoGar3.GL873602 8624905 23 + 8790067 GGTCGTCTGGCAC-AGCCCATGTC i otoGar3.GL873602 I 114 C 0 s mm10.chr5 76424352 23 + 151834684 ACTCTATTGACACAAGCTAATAG- i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4101766 15 - 5279953 GGTTTCCTTGAAT-AG-------- i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e canFam3.chr13 48011395 328 + 63241923 I a score=500411.000000 s hg38.chr4_KI270787v1_alt 72540 53 + 111943 CAAAGGACATAAAGGGGTTGTGGCATCAAGTGCTGAGGG-AGAAAATGGGCATC s panTro5.chr4 119637214 53 - 194502333 CAAAGGATATAAAGGGGTTGTGGCATCAAGTGCTGAGGG-AGAAAATGGGCATC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121050628 53 - 195804263 CAAAGGATATAAAGGGGTTGTGGCATCAAGTGCTGAGGG-AGAAAATGGGCATC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4481872 53 - 17550833 CAAAGGACATAAAGGGGTTGTGGCATCAAGTGCTGAGGG-AGAAAATGGGCATC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69355270 53 - 118206036 CAAAGGACATAAAGGGGCTGTGGCATCAAGTGCTGAGGG-AGAAAACAGGCATC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111564389 53 - 190429646 AAAAAGACATAAAGGGGCTGTGGCATCAAGTGCTGAGGG-AAAAAATGGGCATC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110733578 53 - 189454096 AAAAAGACATAAAGGGGCTGTGGCATCAAGTGCTGAGGG-AAAAAATGGGCATC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13300070 53 + 26754465 AAAAAGACATAAAGGGGCTGTGGCATCAAGTGCTGAGGG-AAAAAATGGGCATC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4201627 53 - 5137665 CAAAAGACATAAAGGGGCTGTGGCATCAAGTGCTGAGGG-AAAAAATGGGCATC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122911243 53 - 135778131 CAAAAGACATAAAGGGGCTGTGGCATCACGTGCTGAGGG-AAAAAATGGGCATC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2023315 53 + 2427316 CAAAAGACATAAAGGGGCTGTGTCATCAAGTGCTGAGGG-AAAAAATGGGCATC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1318576 53 + 1448899 CAAAAGACATAAAGGGGCTGTGGCATCA-GTGTTGAGGGAAAAAAATGGGCATC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53028643 53 - 190850796 CAAAGGACATAAAAAGGCTTTGGCAACAAGTGCTGAGGG-AGAAAATGGGGTTC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8188860 53 - 15139346 CAAAGGACATAAAAAGGCTTTGGCACCAAGTGCTGAGGG-AGAAAATGGGGTTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6974915 53 - 7304997 CAAAGGACATAAAAAGGCTTTGGCACCAAGTGCTGAGGG-AGAAAATGGGGTTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9390602 53 - 11631747 CAAAGGACATAAAAGGGCTTTGGCACCAAGTGCTGAGGG-AGAAAATGGGGTTC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8624928 48 + 8790067 -AGAAGGTTTAAAGGAACTATGGTATTGAGTGCCATGGG-AGAA----GGGACC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76424375 19 + 151834684 GAAAAGAGATGA--------------------CTTGGGG--------------- i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4101781 46 - 5279953 -AAATGGCATAAACAGACTGTGATGAGAA-TGCTTAAA--AGATGATGGC---- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1878421 53 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e canFam3.chr13 48011395 328 + 63241923 I a score=2148999.000000 s hg38.chr4_KI270787v1_alt 72593 164 + 111943 -CCCCAACCCTTTCAAGTTCTCTA-AGTGCTCAGAGGGTGTGGAGGAGGACAACAGAGGTTCTTTCAGCTCCTTGTGGAGAAGCAGGTAAGTGAACAGAAGGGTGCGAGCCATGGGTTGCCTACTCAGTGAGATACCCAGCTCTCTGAGGGGTATCAGTGACAGGG s panTro5.chr4 119637267 164 - 194502333 -CCCCAACCCTTTCAAGTTCTCTA-AGTGCTCAGAGGGTGTGGAGGAGGACAACAGAGGTTCTTTCAGCTCCTTGTGGAGAAGCAGGTAAGTGAACAGAAGGGTGCGAGACATGGGTTGCCTACTCAGTGAGATACCCAGCTCTCTGAGGGGTATCAGTGACAGGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121050681 164 - 195804263 -CCCCAACCCTTTCAAGTTCTCTA-AGTGCTCAGAGGGTGTGGAGGAGGACAACAGAGGTTCTTTCAGCTCCTTGTGGAGAAGCAGGTAAGTGAACAGAAGGGTGCGAGCCATGGGTTGCCTACTCAGTGAGATACCCAGCTCTCTGAGGGGTATCAGTGACAGGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4481925 163 - 17550833 -CCCCAACCCTGTCAAGTTCTCTA-AGTGCTCAGAGGGTGTGGAAGA-GACCACAGAGGTTCTTTCAGCTCCTTGTGGAGAAGCAGGTAAGTGAACAGAAGGGTGCGAGCCATGGGTTGCCTACTCAGTGAGATACCCAACTCTCTGAGGGGTATCAGTGACAGGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69355323 164 - 118206036 -CCCCAACCCTTTCAAGTTCTCTA-AGTGCTCAGAGGGTGTGGAGGAGGACCACAGAGTTTCTTTCAGCTCCTTGTGGAGAAGCAGGTAAGTGAACAGAAGGATGCGAGCCATGGGTTGCCTACTCAGTGAGATACCCAACTCTCTGAGGGGTATCAGTGACAGGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111564442 164 - 190429646 -CCCCAACCCTTCCAAGTTCTCTG-AGTGCTCAGAGGGTGTGGAGGAGGATCACAGAGGTTCTTTCAGCTCCTTGTGGAGAAGCAGGTAAGTGAACAGAAGGGTGCGAGCCATGGGTTGCCTACTCAGTGAGATACCCAACTCTCTGAGGGGTATCAGTGACAGGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110733631 164 - 189454096 -CCCCAACCCTTCCAAGTTCTCTG-AGTGCTCAGAGGGTGTGGAGGAGGATCACAGAGGTTCTTTCAGCTCCTTGCGGAGAAGCAGGTAAGTGAACAGAAGGGTGCGAGCCATGGGTTGCCTACTCAGTGAGATACCCAACTCTCTGAGGGGTATCAGTGACAGGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13300123 164 + 26754465 -CCCCAACCCTTCCAAGTTCTCTG-AGTGCTCAGAGGGTGTGGAGGAGGATCACAGAGGTTCTTTCAGCTCCTTGTGGAGAAGCAGGTAAGTGAACAGAAGGGTGCGAGCCATGGGTTGCCTACTCAGTGAGATACCCAGCTCTCTGAGGGGTATCAGTGACAGGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4201680 164 - 5137665 -TCCCAACCCTTCCAAGTTCTCTG-AGTGCTCAGAGGGTATGGAGGAGGATCACAGAGGTTCTTTCAGCTCCTTGTGGAGAAGCAGGTAAGTGAACAGAAGGGTGCGAGCCATGGGTTGCCTACTCCGTGAGATACTCAACTCTCTGAGGGGTGTCAGTGACAGGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122911296 164 - 135778131 -CCCCAACCCTTCCAAGTTCTCTG-AGTGCTCAGAGGGTGTGGAGGAGGATCACAGAGGTTCTTTCAGCTCCTTGTGGAGAAGCAGGTAAGTGAACAGAAGGATGCGAGCCATGGGTTGCCTACTCAGTGAGATACCCAACTCTCTGAGGGGTATCAGTGACAGGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2023368 164 + 2427316 -CCCCAACCCTTCCAAGTTCTCTG-AGTGCTCAGAGGGTGTGGAGGAGGATCACGGAGGTTCTTTCAGCTCCTTGTGGAGAAGCAGGTAAGTGAACAGAAGGGTGCGAGCCATGGGTTGCCTACTCAGTGAGATACCCAACTCTCTGAGGGGTGTCAGTGACAGGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1318629 164 + 1448899 -CCCCAACCCTTCCAAGTTCTCTG-AGTGCTCAGAGGGTGTGGAGGAGGATCACAGAGGTTCTTTCAGCTCCTTGTGGAGAAGCAGGTAAGTGAACAGAAGGGTGCGAGCCATGGGTTGCCTACTCAGTGAGATACCCAACTCTCTGAGGGGTATCAGTGACAGGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53028696 164 - 190850796 -CTCCCACCCTTCCAAGTTCTTCA-AGTGCTCGGAGGGTGTGGAGGAAGACCACAGAGGTTCTTTCAGCTCTTTGTGGAGAAGCAGGTACATGAACAGAAGGGTGGGAGCCATGGGTTGCCTACTCAGTGAGATACCCAACTCTCTGAGAAGTATCAGTGACAGGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8188913 163 - 15139346 -CTCCAACCCTTCCAAGTTCTTCA-AGTGCTCAGAGGGTGTGGAGGAGGACCACAGAGGTTCTTTCGGCTCTTTGTGGAGAAGCAGGCACATGAACAGAAGGGCGGG-GCCATGGGTTGCCTCCTCAGTGGGATACCCAACTCTCTGAGAGGTACCAGTGACAGGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6974968 161 - 7304997 -CTCCAACCCTTCCAAGTTCTTCA-AGTGCTCGGAGGGTGTGGAG---GACCACAGAGGTTCTTTCAGCTCTTTGTGGAGAAGCAGCCACGTGAACAGAAGGGCAGGACCCATGGGTTGTCTGCTCAGTGGAATACCCAACTCTCTGAGAGGTATCAGTGACAAGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9390655 164 - 11631747 -CTCCAACCCTTCCAAGTTCTTCA-AGTGCTCAGAGGGTGTGGAGGAGGACCACAGAGGTTCTTTCAGCTCTTTGTGGAGAAGCAGGTATGTGAACAGAAGGGCGGGAGCCATGGGTTGCCTACTCAGTGAGATACCCAGCTCTCTAAGAGGTATCAGTGACAGGG i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1878474 165 + 4188776 -CCCCACCCCTTCCCAGTTCTCAGCCATGCTCAGAGGGTGTGGAGGAGGACCACAGAGATTCCTTCAGGTCCTTGTGGAGAAGCACGTAAGTCAGCAGAAGGGCAGGAGCCAGGGGTTGCCTACTCGGTGAGATACCCAACTCTCTAAGGAGTATCAGTGACAGGG i proCoq1.NW_012140747v1 I 53 I 139 s otoGar3.GL873602 8624976 162 + 8790067 ---CCACCCCTT-CCAGTTCTCTACCATGCTCAGAGGGTGTGAAGGAAAACCACAGGGCTTCCTTCAAATCCTTGTGGAGCAGAAAGGAAGTCCTCAGAAGTGTAGGAGTCTTGGGTTGCCTACTCGGCGATATGCCCAGCTCTCTGAGGAGTACCAGTTACAGGG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76424394 153 + 151834684 -CCCCATGGCTTCTCTGTTCTCTACAGTGCTCAGCGCTTGTGAAGGGAGATCACAGAATCTGCTTTAGAT-TTGGTGGGGAAACAGGTACCTCAATAGAAAGGTGGGGCGTGAGGGTTGCCTCA-----GAGATAGCC------TTTGGAGGGACCATCAAGAAGG i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4101827 130 - 5279953 ACCTTACCCCATCACAGTTCTCCACAGCCCAGAGAAGGTGTGGGGGAGAACCACAGAGGTTCCTTTGGATCCTTATGGAGAAAGATATAGGTCAGCGGATGGGCAGGAGTCATGGGTTGCCTGACCAGAG------------------------------------ i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e canFam3.chr13 48011395 328 + 63241923 I a score=1165748.000000 s hg38.chr4_KI270787v1_alt 72757 128 + 111943 CAAAGATTAGTGCTGCCAAAGGAAAG-------ACCACATCAGGAGAA-GAGGCCAAGGAAGGGTGCTTCCTTCATGAAACCTTTCACTCCTCTATACCTCACCTCTGCCTCTCCCCAAGGAAGA--GTGAGCTAGTG s panTro5.chr4 119637431 128 - 194502333 CAAAGATTAGTGCTGCCAAAGGAAAG-------ACCACATCAGGAGAA-GAGGCCAAGGAAGGGTGCTTCCTTCATGAAACCTTTCACTTCTCTATACCTCACCTCTGCCTCTCCCCAAGGAGGA--GTGAGCTAGTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121050845 128 - 195804263 CAAAGATTAGTGCTGCCAAAGGAAAG-------ACCACATCAGGAGAA-GAGGCCAAGGAAGGGTGCTTCCTTCATGAAACCTTTCACTTCTCTATACCTCACCTCTGCCTCTCCCCAAGGAGGA--GTGAGCTAGTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4482088 128 - 17550833 CAAAGATTAGTGCTGCCAAAGGAAAG-------ACCACATCAGGAGAA-GAGGCCAAGGAAGGATGCTCCCTTCATGAAACCTTTCACTCCTCTATACCTCACCTCTGCCTCTCCCCAAGGAAGA--GTGAGCTAGTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69355487 128 - 118206036 CAAAGATTAGTGCTGCCGAAGGAAAG-------ACTACATCAGGAGAA-GAGGCCAAAGAAGGCTGCTCCCTTCATGAAACCTTTCACTCCTCTATACCTCACCTCTGCCTCTCCCCAAGGAAGA--GTGAGCTAGTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111564606 128 - 190429646 CAAAGATCTGTGCTACCAAAGGAAAG-------ACTACATCAGGAGAA-GAGGCCAAGGAAGGCTGCTCCCTTAATGAAACCTTTCACTCCTCTATGCCTCATCTCTGCCTCCTCCCAAGGGAGA--GAGAGCTAGTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110733795 128 - 189454096 CAAAGATCTGTGCTACCAAAGGAAAG-------ACTACATCAGGAGAA-GAGGCCAAGGAAGGCTGCTCCCTTAATGAAACCTTTCACTCCTCTATGCCTCATCTCTGCCTCCTCCCAAGGGAGA--GAGAGCTAGTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13300287 127 + 26754465 CAAAGATCTGTGCTACCAAAGGAAAG-------ACTACATCAGGAGAA-GAGGCCAAGGAAGGCTGCTCCCTTAATGAAACC-TTCACTCCTCTATGCCTCATCTCTGCCTCCTCCCAAGGGAGA--GAGAGCTAGTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4201844 128 - 5137665 CAAAGATCTGTGCCACCAAAGGAAAG-------ACTACATCAGGAGAA-GAGGCCAAGGAAGGCTGCTCCCTTAATGAAACCTTTCACTCCTCTACGCCTCATCTCTGCCTCCTCCCAAGGGAGA--GAGAGCTAGTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122911460 128 - 135778131 CGAAGATCTGTGCTACTAAAGGAAAG-------ACTACATCAGGAGAA-GAGGCCAAGGAAGGCTGCTCCCTTAATGAAACCTTTCACTCCTCTATGCCTCATCTCTGCCTCCTCCCAAGGGAGA--GAGAGCTAGTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2023532 126 + 2427316 CAAAGATCTGTGCCACCAAAGGAAAG-------ACTACATCAGGAGAA-GAGGCCAAGGAAGGCTGCTCCCTTAATGAAACCTTTCACTCCTCTATGCCTCATCTCTGCCTCCTCCC--GAGAGA--GAGAGCTAGTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1318793 128 + 1448899 CAAAGATCTGTGCTGCCAAAGGAAAG-------ACTACATCAGGAGAA-GAGGCCAAGGAAGGCTGCTCCCTTAATGAAACCTTTCACTCCTCTATGCCTCATCTCTGCCTCCTCCCAAGGGAGA--GAGAGCTAGTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53028860 128 - 190850796 CAAAGA----AGCTGCCAAAGACAAGCA----CACTA-ACCAGGAGAA-GAGTCCAAGGAAGGCTGCTCCTTTAATGAAACCTTTCACTTCTCTATGCCTCATCTCTGCCTCCTCCCAAGGGAGAGTGAGAGCTAGCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8189076 124 - 15139346 CAAAGA----AGCTGCCAAAGACAAGCAC---CACTACATCAGGAGAA-GAGGCCGAGGAAGGCTGCTCCCTTAATGAAACCTTTCACTCCTCTATGCCTCATCTCTGCCTCCTCCCAAGG------GAGAGCTAGCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6975129 124 - 7304997 CAAAGA----AGCTGCCAAAGGCAAGCAC---CACTACATCAGGAGAA-GAGGCCGAGGAAGGCTGCTCCCTTAATGAAAACTTTCACTCCTCTGTGCTTCATCTCTGCCTCCTCCCAAGG------GAGAGCTAGCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9390819 130 - 11631747 CAAAGA----AGCTGCCAAAGATAAGCAC---CACTACATCAGGAGAA-GAGGCCAAGGAAGGCTGCTCCCTTAATGAAACCTTTCACTCCTCTATGCCCCATCTCTGTCTCCTCCCAACAGAGAGTGAGAGCTAGCA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8625138 98 + 8790067 TACAGCTCAATGCTGCCAAAGAAAAATACCCACACCACCTCACAAGA---AGTCCAAGGCAGGTTGGTCCCTTTAGGAAAACT--------------------------------CCAGGGT-----GAGAGCTGGAA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76424547 130 + 151834684 TGAAAGTCAGCACTGTCAAGGGAAAGTATCCACAGAGCATCTGAAGAG-GTGAGTCAGG-----TTTTCTCTTAAAGAGACCATCAGGCCCCCTGTACCTCATCTCTGCCTCTCTAAACTGGAGT--GGAAATTGGAA i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4101957 62 - 5279953 TAAAGATGAACACTGCCAAAGAAAAG------CACTA-ATCAGTAGAAGGAGGCCGAGTGAGGTTGGTC--------------------------------------------------------------------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1878639 139 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e canFam3.chr13 48011395 328 + 63241923 I a score=516028.000000 s hg38.chr4_KI270787v1_alt 72885 41 + 111943 TCTCAAGCGAGATCACAACCCCTCTGGACTCAA--AGCAGCCA s panTro5.chr4 119637559 41 - 194502333 TCTCAAGCGAGATCACAACCCCTCTGGACTCAA--AGCAGCCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121050973 41 - 195804263 TCTCAAGCGAGATCACAACCCCTCTGGACTCAA--AGCAGCCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4482216 41 - 17550833 TCTCAAGCCAGATCACAACCCCTCTGGACTCAA--AGCAGCCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69355615 41 - 118206036 TCTCAAGCCAGATCACAACCCCTCTGGACTCAA--AGCAGCCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111564734 41 - 190429646 TCTCAAACCAGATCACAACCCCTCTGGACTCAT--AGCAGCCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110733923 41 - 189454096 TCTCAAACCAGATCACAACCCCTCTGGACTCAT--AGCAGCCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13300414 41 + 26754465 TCTCAAACCAGATCACAACCCCTCTGGACTCAT--AGCAGCCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4201972 41 - 5137665 TCTCAAACCAGATCACAACCCCTCTGGACTCAT--AGCAGCCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122911588 41 - 135778131 TCTCAAACCAGATCACAACCCCTCTGGATTCAT--AGCAGCCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2023658 41 + 2427316 TCTCAAACCAGATCACAACCCCTCTGGACTCAT--AGCAGCCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1318921 41 + 1448899 TCTGAAACCAGATCACAACCCCTCTGGACTCAT--AGCAGCCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53028988 41 - 190850796 TCTCAAGCCTGATCACAACCCCTCTGGACTCAA--AGCAGCCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8189200 41 - 15139346 TCTCAAGCCCGATCACAACCCCTCCGGACTCAA--AGCAGCCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6975253 41 - 7304997 TCTCAAGCCAGATCACAACCCCTCTGGACTCAA--AGCAGCCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9390949 41 - 11631747 TCTCAAGCCAGATCACAATCCCTCTGGACTCAA--AGCAGCCA i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1878778 41 + 4188776 TCTCAAGCCAGATCACAACCGCTCTATACTCAA--TGCAGCTA i proCoq1.NW_012140747v1 I 139 C 0 s otoGar3.GL873602 8625236 41 + 8790067 TCTCAAGCCAGGTCACAACCTCTCCATTCTCAA-CTGCAGCC- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76424677 43 + 151834684 TCTCGAGACAGATCACATTACCTCTCTACCCAAGTGGCTGTCA i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4102019 15 - 5279953 ----------AATCA----------------AA--AGCAGCTA i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e canFam3.chr13 48011395 328 + 63241923 I a score=128451.000000 s hg38.chr4_KI270787v1_alt 72926 11 + 111943 GGACCACAGCT s panTro5.chr4 119637600 11 - 194502333 GGACCACAGCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121051014 11 - 195804263 GGACCACAGCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4482257 11 - 17550833 GGACCACAGCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69355656 11 - 118206036 GGACCACAGCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111564775 11 - 190429646 GGACCACAGCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110733964 11 - 189454096 GGACCACAGCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13300455 11 + 26754465 GGACCACAGCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4202013 11 - 5137665 GGACCACAGCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122911629 11 - 135778131 GGACCACAGCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2023699 11 + 2427316 GGACCACAGCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1318962 11 + 1448899 GGACCACAGCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53029029 11 - 190850796 GGACAACAGCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8189241 11 - 15139346 GGACAACAGCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6975294 11 - 7304997 GGCCAACAGCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9390990 11 - 11631747 GGACAACAGCT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1878819 11 + 4188776 GTACCACAGCT i proCoq1.NW_012140747v1 C 0 I 2055 s mm10.chr5 76424720 10 + 151834684 GG-TCGTAGCT i mm10.chr5 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e dasNov3.JH568349 4102034 0 - 5279953 C e otoGar3.GL873602 8625277 0 + 8790067 C e canFam3.chr13 48011395 328 + 63241923 I a score=1810100.000000 s hg38.chr4_KI270787v1_alt 72937 185 + 111943 TCAGATTTCATTGGAAGGAAGAGAGAAGCCAAGAGGT---AAGAAGCTATATTTAAGgactgaagttttggattggactagattaagttttaataactgaaaatgattgaataattatggaattgggccaggataatgttaagggagccactaaccagcaaaagagtaggagtcaagccagcacaact- s panTro5.chr4 119637611 185 - 194502333 TCAGATTTCATTGGAAGGAAGAGAGAAGCCAAGAGGT---AAGAAGCTATATTTAAGgactgaagttttggattggactagattaagttttaataactgaaaatgattgaataattatggaattgggccaggataatgttaagggagccactaaccagcaaaagagtaggagtcaagccagcacaact- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121051025 185 - 195804263 TCAGATTTCATTGGAAGGAAGAGAGAAGCCAAGAGGT---AAGAAGCTATATTTAAGgactgaagttttggattggactagattaagttttaataactgaaaatgattgaataattatggaattgggccaggataatgttaagggagccactaaccagcaaaagagtaggagtcaagccagcacaact- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4482268 183 - 17550833 TCAGATTTCATTGGAA-GAAGAGAGAAGCCAAGAGGT---AAGAAGCTATATTTAAGgactgaagttttggattggactagattaagttttaataactgaaaatgattgaataattatggaattgggccaggataatgttaa-ggagccactaaccagcaaaagagtaggagtcaagccagcacaact- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69355667 185 - 118206036 TCAGATTTCATTGGAAGGAAGACAGAAGCCAAGCAAT---AAGAAGCTATATTTAAGgactgaagttttggattggactagattaagttttaataactgaaaatgattgaataatcatggaattgggccaggataatgttaagggagccactaaccagcaaaagagtaggagtcaagccagcacaact- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111564786 175 - 190429646 TCAGATTTCACTGGAAGGAAGAGAGAAGCCAAGAGGT---AAGAAGCTATATTTAAGAattgaagttttggattggactagatt--gttttaataactgaaaatgatt--------atggaattgggccaggataatgttaagggaGCCACTAACCAGCAAAAGAGTAGGAGTCAAGCCAGCACAACG- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110733975 175 - 189454096 TCAGATTTCACTGGAAGGAAGAGAGAAGCCAAGAGGT---AAGAAGCTATATTTAAGAATTGAAGTTTTGGATTGGACTAGATT--GTTTTAATAACTGAAAATGATT--------ATGGAATTGGGCCAGGATAATGTTAAGGGAGCCACTAACCAGCAAAAGAGTAGGAGTCAAGCCAGCACAACG- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13300466 178 + 26754465 TCAGGTTTCACTGGAAGGAAGAGAGAAGCCAAGAGGTAAGAAGAAGCTATATTTAAGAattgaagttttggattggactagatt--gttttaataactgaaaatgatt--------atggaattgggccaggataatgttaagggaGCCACTAACCAGCAAAAGAGTAGGAGTCAAGCCAGCACAACG- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4202024 175 - 5137665 TCAGATTTCACTGGAAGGAAGAGAGAAGCCAAGAGGT---AAGAAGCTATATTTAAGAATTGAAGTTTTGGATTGGACTAGATT--GTTTTAATAACTGAAAATGATT--------ATGGAATTGGGCCAGGATAATGTTAACGGAGCCACTAACCAGCAAAAGAGTAGGAGTCAAGCCAGCACAACG- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122911640 175 - 135778131 TCAGATTTCACTGGAAGGAAGAGAGAAGCCAAGAGGT---AAGAAGCTATATTTAAGAATTGAAGTTTTGGATTGGACTAGATT--GTTTTAATAACTGAAAATGATT--------ATGGAATTGGGCCAGGATAATGTTAAGGGAGCCACTAACCAGCAAAAGAGTAGGAGTCAAGCCAGCACAACG- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2023710 175 + 2427316 TCAGATTTCACTGGAAGGAAGAGAGAAGCCAAGAGGT---AAGAAGCTATATTTAAGAattgaagttttggattggactagatt--gttttaataactgaaaatgatt--------atggaattgggccaggataatgttaagggaGCCACTAACCAGCAAAAGAGTAGGAGTCAAGCCAGCACAACG- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1318973 175 + 1448899 GCAGATTTCACTGGAAGGAAGAGAGAAGCCAAGAGGT---AAGAAGCTATATTTAAGgattgaagttttggattggactagatt--gttttaataactgaaaatgatt--------atggaattgggccaggataatgttaagggagccactaaccagcaaaagagtaggagtcaagccagcacaatg- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53029040 180 - 190850796 TCAGATTTCATTGGAAGGAAGAGAGAAGCCAAGAGAT---AAGAAGCTATACTTAgggattgaagttttggattggactaggttaagctttaataattgaagatgattggataattatggaattgggccaggatcatgttaagggagccaccaatcagcaaa-----aggagtcaagccaacacaacg- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8189252 180 - 15139346 TCAGACTTCATTGGAAGGAAGAGAGAAGCCAAGAGGT---AAGAAGCCATATTTAAGgattgaagttttggattggactggattaagctttaataactgaagatgattggataattatggaactgggccaggatcatgttaagggagccaccaaccagcaaa-----aggagtcaagccaacacaatg- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6975305 179 - 7304997 TCAGACTTCGTTGGAAGGAAGAGAGAAGCCAAGAGGT---AAGAAGCTATATTTAAGgattgaagttttggattggactggattaagctttaataactgaaggtgattagataattatggaactgggccaggatcatgttaagggaGCCACCAACCAAC-AA-----AGGAGTCAAGCCAACACAACG- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9391001 180 - 11631747 TTAGACTTCATTGGAAGGGAGAGAGAAGCCAAGAGAT---AAGAAGCTATATTTAAGGATTGAAGTTTTGGATTGGGCTGGATTAAGCTTTAATAACTGAAGATGATTGGATAATTAAGGAATTGGGCCAGGATCATGTTAAGGGAGCCACCAACCAGCAAA-----AGGAGTAAAGCCAACACAACA- i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8625277 109 + 8790067 ----------------------------------------------CTAACTTT-----------------------CTA------GTTTTAATAATT-AAAATGGCTGAGTAAGTCTGGAATTAGGCCAAGATAATGTGAAGGGAGCCACGAACCAGTGAAA----AGGAATTCAAGCAACACAATTA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76424730 151 + 151834684 CTAGATTTTCCCAGCACACAGG------------------AAGAAGACAAATTTAAGGATGGAAGCATTAGACTGAGGAGAATTAAGTTTTACCAACTGAAAATGATTGCATAATTATGGAATTGGCCTAAGATCATGTTAAGGGTATTTCCAACCAAGTAAA-------------------ACAATA- i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1878830 2055 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e dasNov3.JH568349 4102034 0 - 5279953 C e canFam3.chr13 48011395 328 + 63241923 I a score=1864245.000000 s hg38.chr4_KI270787v1_alt 73122 172 + 111943 aaaatcagttaaataaat---tagataaaactattttgtgtt--tgtctt----gatgacgtgaga-c---tc----aacaaactccagttacacctactagacattcatatagaaac-------------------------------------------------------------------acatcaat-----------------------ttgggtatataaatctagagcccagaaggaagatcaggaatggaaagatagatttggaaatga s panTro5.chr4 119637796 172 - 194502333 aaaatcagttaaataaat---tagataaaactattttgtgtt--tgtctt----gatgacgtgaga-c---tc----aacaaactccagttacacctactagacattcatatagaaac-------------------------------------------------------------------acatcaat-----------------------ttgggtatataaatctagagcccagaaggaagatcatgaatggaaagatagatttggaaatga i panTro5.chr4 C 0 C 0 s panPan2.chr4 121051210 172 - 195804263 aaaatcagttaaataaat---tagataaaactattttgtgtt--tgtctt----gatgacgtgaga-c---tc----aacaaactccagttacacctactagacattcatatagaaac-------------------------------------------------------------------acatcaat-----------------------ttgggtatataaatctagagcccagaaggaagatcaggaatggaaagatagatttggaaatga i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4482451 172 - 17550833 aaaaccagttaaataaat---tagataaaactattctgtgtt--tgtctt----gatgacgtgaga-c---tc----aacaaactccagttacacctactagacattcatatagaaac-------------------------------------------------------------------acatcaat-----------------------ttgggtatataaatctagagcccagaaggaagatcaggaatggaaagatagatttggaaatga i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69355852 172 - 118206036 aaagtcagttaaataaat---taaataaaaccattttgtgtt--tgtctt----gatgacatgaga-c---tc----aacaaactccagttacacctactagacattcatatagaaac-------------------------------------------------------------------acatcaat-----------------------ttgggtatataaatctagagcccagaaggaagatcaggaatggaaagatagatttggaaatga i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111564961 172 - 190429646 AAAATCAGGTAAATAAAT---TAAATAAAACCATTTTGTGTT--TGTCTT----GGTGACGTGAGA-C---TG----AACAAACTCCAGTTACAcctactagacattcatgtagaaac-------------------------------------------------------------------acattaat-----------------------ttgggtatataaatctagagcccagaaggaagatcaggattggaaagatagacttggaaatga i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110734150 172 - 189454096 AAAATCAGGTAAATAAAT---TAAATAAAACCATTTTGTGTT--TGTCTT----GGTGACGTGAGA-C---TG----AACAAACTCCAGTTACAcctactagacattcatgtagaaac-------------------------------------------------------------------acattaat-----------------------ttgggtatataaatctagagcccagaaggaagatcaggattggaaagatagacttggaaatga i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13300644 172 + 26754465 AAAATCAGGTAAATAAAT---TAAATAAAACCATTTTGTGTT--TGTCTT----GGTGACGTGAGA-C---TG----AACAAACTCCAGTTACAcctactagacattcatgtagaaac-------------------------------------------------------------------acattaat-----------------------ttgggtatataaatctagagcccagaaggaagatcaggattggaaagatagacttggaaatga i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4202199 172 - 5137665 AAAATCAGGTAAATAAAT---TAAATAAAACCATTTTGTGTT--TGTCTT----GGTGACGTGAGA-C---TG----AACAAACTCCAGTTACAcctactagacattcgtgtagaaac-------------------------------------------------------------------acattaat-----------------------ttgggtatataaatctagagcccagaaggaagatcaggaatggaaagatagacttggaaatga i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122911815 172 - 135778131 AAAATCAGGTAAATAAAT---TAAATAAAACCATTTTGTGTT--TGTCTT----GGTGACATGAGA-C---TG----AACAAACTCCAGTTACAcctactagacacttgtgtagaaac-------------------------------------------------------------------acatgaat-----------------------ttgggtatataaatctagagcccagaaggaagatcaggaatggaaagatagacttggaaatga i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2023885 172 + 2427316 AAAATCAGGTAAATAAAT---TAAATAAAACCATTTTGTGTT--TGTCTT----GGTGACGTGAGA-C---TG----AACAAACTCCAGTTACAcctactagacattcgtgtagaaac-------------------------------------------------------------------acattaat-----------------------ttgggtatataaatctagagcccagaaggaagatcaggaatggaaagatagacttggaaatga i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1319148 172 + 1448899 aaaatcaggtacataaat---taaataaaaccattttgtgtt--tgtctt----ggtgatgtgaga-c---tg----aacaaactccagttacacctactagacatttgtgtagaaac-------------------------------------------------------------------acattaat-----------------------ttgggtatataaatctagagcccagaaggaagatcaggaatggaaagatagatttggaaatga i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53029220 174 - 190850796 aaaatcagtaaaataaat---taaataaaaccattttgtatttCTGTCTT----GATGATGGGAGA-C---TC----AACAAACTCCAGTTatacctactagacattcatgtagaaac-------------------------------------------------------------------acatcaat-----------------------ttgggcacataaatctagagcccagaaggaagattaagaatggaaagacagatttggaaatga i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8189432 169 - 15139346 aaaatcagtaaaa--------taaataaaaccattttgtatttctgtctt----gatgacgggaga-c---tc----aacgaactccagttacacctactagacattcatgtataaac-------------------------------------------------------------------acatcagt-----------------------ttgggcatataaatctagagcccagaaggaagattaggaatggaaagacagatgtggaaatga i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6975484 169 - 7304997 AAAATCAGTAAAA--------CAAATAAAACCATTTTGTATTTCTGTCTT----GATGACGGGAGA-C---TC----AACAAACTCCAGTTatacctactagacattcatgtagaaac-------------------------------------------------------------------acatcaat-----------------------ttgggcatataaatctagagcccagaaggaagattaggaatggaaagacagatttggaaatga i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9391181 172 - 11631747 AAAATCAGTAAAATAAAT---TAAATAAAACCATTTTGTATTTCTGTCTT----GATGAAGGGAGA-C---TC----AACAAACTCCAgatatacctactagacattcatgtagaaac-------------------------------------------------------------------acatcaat-----------------------ctgggcatataaatctagagcccagaaggaagtttaggaatgg--agacagatttggaaatga i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8625386 175 + 8790067 AAAATCAGTAAAAAAAGTAAATAAATAAAATCACTTTATCTT--TATATCTGTATATGACTTGAGACC---TC----AACAAA--CCAATTatagctattagacatttatatagag---------------------------------------------------------------------acatcaag-----------------------ttggtcatatgagtctggaacttagaagaaagagcagga-tagagagagagatttgCAAATGA i otoGar3.GL873602 C 0 I 161 s mm10.chr5 76424881 243 + 151834684 AAA------------------CAAATAAAAGCATTTCATATTTTTATGTT----TATGCCTTGAGA-CTCTTC----TCCGAA--CCAATGGAATCTATTAGTCCTTAATGCAGAGACACTAGGGGAAGTACATGAGGTCATCTCCAGTTATTTTTCTAGTTTCCCCCATTGGTTTCTTCTTTGAACATCGATTGTTGAAGGACAAACTGTCTAGGTTGGGTCTA------TGGAGCTCAGGAAAACTA-CAAGAAGGAAGAGTCACATTTGGGCATAA i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4102034 150 - 5279953 --------------------------AAAATCATTTTATAGTTTACACTA----TATGACTTAAGA-C---TCCTAAAACAAATCAC---TGtacctatcagtcatttatgtggag---------------------------------------------------------------------acatcaag-----------------------ttgggtataagagtctggagcttagaagaaaggtcaggaatgtagaagtagatttggaagaga i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1878830 2055 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e canFam3.chr13 48011395 328 + 63241923 I a score=2381274.000000 s hg38.chr4_KI270787v1_alt 73294 235 + 111943 tggttatagagacggaccctgctgatggttaaaaccatgggactagataagaac-tttagagacagt------gacaagccctagaacactccacagtgacacatcaagcaagag---tggagtcagcaaatcacagtgggaagcgggc-------------cttgagagaagtgaaatacagcataa---tgtgtcccagaag-caagagaagaaaatgttttctgaggaagagaatagacaactgtgatggtatgtggag s panTro5.chr4 119637968 235 - 194502333 tggttatagagacggaccctgctgatggttaaaaccatgggactagataagaac-tttagagacagt------gacaagccctagaacactccacagtgacacatcaagcaagag---tggagtcagcaaatcacagtgggaagcgggc-------------cttgagagaagtgaaatacagcataa---tgtgtcccagaag-caagagaagaaaatgttttctgaggaagagaatagacaactgtgatggtatgtggag i panTro5.chr4 C 0 C 0 s panPan2.chr4 121051382 235 - 195804263 tggttatagagatggaccctgctgatggttaaaaccatgggactagataagaac-tttagagacagt------gacaagccctagaacactccacagtgacacatcaagcaagag---tggagtcagcaaatcacagtgggaagcgggc-------------cttgagagaagtgaaatacagcataa---tgtgtcccagaag-caagagaagaaaatgttttctgaggaagagaatagacaactgtgatggtatgtggag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4482623 235 - 17550833 tggttatagagacggaccctgctgatggttaaaaccatgggactagataagaac-tttagagacagt------gacaagccctagaacactccatagtgacacatcaagcaagag---tggagtcagcaaatcacagtgggaagcgggc-------------cttgagagaagtgaaatacagcataa---tgtgtcccagaag-caagagaagaaaatgttttctgaggaagagaatAGAAAACtgtgatggtatgtggag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69356024 235 - 118206036 tggttatagagatggaccctgctgacggttaaaaccatgggactagataagaac-tttagagacagt------gataagccgtaggacactccacagtgacacatcaagcaagag---tggagtcagcaaatcacagtgggaagcgggc-------------cttgagagaagtgaaatacagcataa---tgtgtcccagaag-caagagaagaaaatgttttctgaggaagagaatagacaactgtgatggtatgtggag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111565133 248 - 190429646 tggttatagagatggacgctgctgatggttaaaaccataggactaggtaagaac-tgtagagacaat------gacaagtcctaggacactccacattgacacatcaagcaagag---tggagtcagcaaatcacaatgttaagcaggccttgagagaagcacttgagagaagtgaaatacagcataa---tgtgtcccagaag-caagagaagaaactgttttctgaggaagagaataggtaactgtgatggtatgtggaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110734322 248 - 189454096 tggttatagagatggacgctgctgatggttaaaaccataggactaggtaagaac-tgtagagacaat------gacaagtcctaggacactccacattgacacatcaagcaagag---tggagtcagcaaatcacaatgttaagcaggccttgagagaagcacttgagagaagtgaaatatagcataa---tgtgtcccagaag-caagagaagaaactgttttctgaggaagagaataggtaactgtgatggtatgtggaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13300816 248 + 26754465 tggttatagagatggacgctgctgatggttaaaaccataggactaggtaagaac-tgtagagacagt------gacaagtcctaggacactccacattgacacatcaagcaagag---tggagtcagcaaatcacaatgttaagcaggccttgagagaagcacttgagagaagtgaaatacagcataa---tgtgtcccagaag-caagagaagaaactgttttctgaggaggagaataggtaactgtgatggtatgtggaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4202371 248 - 5137665 tggttatagagatgggcgctgctgatggttaaaaccataggactaggtaagaac-tgttgagacagt------gacaagtcctaggacacttcacattgacacatcaagcaagag---tggagtcagcaaatcacagtgttaagcaggccttgagagaagcacttgagagaagtgaaatacagcataa---tgtgtcccagaag-caagagaagaaactgttttctgaggaagagaataggtaactgtgatggtatgtggaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122911987 248 - 135778131 tggttatagagatggacgctgctgatggttaaaaccataggactaggtaagaac-tgtagagacagt------gacaagtcctaggacactccacattgacacatcaagcaagag---tggagtcagcaaatcacagtgttaagcaggccttgagagaagcacttgagagaagtgaaatacagcataa---tgtgtcccagaag-caagagaagaaactgttttctgaggaagagaataggtaactgtgatggtatgtggaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2024057 248 + 2427316 tggttatagagatggacgctgctgatggttaaaaccataggactaggtaagaac-tgtagagacagt------gacaagtcctaggacactccacattgacacgtcaagcaagag---tggagtcagcaaatcacagtgttaagcaggccttgagagaagcacttgagagaagtgaaatacaggataa---tgtgtcccagaag-caagagaagaaactgttttctgaggaagagaataggtaactgtgatggtatgtggaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1319320 248 + 1448899 tgattctagagatggaccctgctgatggttaaaaccataggactaggtaaaaac-tgcagagacagt------gacaagtcctaggacactccacactgacacatcaagcaagag---tggagtcagcaaatcacagtgttaagcaggccttgagagaagcacttgagagaagtgaaatacagcataa---tgtgtcccagaag-caagagaagaaattgttttctgaggaagagaatagataactgtgatggtatgtggaa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53029394 233 - 190850796 tgggaatagagatggaccctgctggtggttgaaaccatgggactagatgagtac-tgtagtgacagt------gacgagccctaggacactccactgtgacacaccaagcaagaa---tggagtcagcaaatcacagtgggaagtgggc-------------ctt--gagaagtgaaacccagtagga---tgtgtcccagaag-caagagaagaaaacgttttctgaagaagagaatagacaactgtgatggtatatggag i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8189601 233 - 15139346 tgggaatagagatggaccctgctggtgatggaaaccatgggactagatgagaac-tgtagtgacagt------gacaagccctaggacactccacagtgacacgccaagcaagag---tggaatcagcaaatcacagtgggaagcaggc-------------ctt--gagaagtgaaacacagtgtga---tgtgtcccagagg-caagagaagaaaacgttttctgaagaagagaatagacaactgtgatggtatgcggag i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6975653 233 - 7304997 tgggaatagagatggatcctgctggtggttgaaaccatgggactagatgagaac-tgtagtgacggt------gacaagccctaggacgctccaccgtgacacaccaagcaagag---tggagtcagcaaatcacagtgggaagtgggc-------------ctt--gagaagtgaaacacagtatga---tgtatcccagaag-caagagaagaaaacgttttctgaagaagagaatagacaactgtgatggtatgtggag i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9391353 230 - 11631747 tgggaatagagatggaccctgctggtggttgaaaccatgggactagatgagaac-tgtagtgacagt------gacaagctctaggacactccacagtgacacaccaagcaagag---tggagtcagcaaatcacagtgggaagcgggc-------------ctt--gagaagtgaaacacagtatga---tgtgtcccagaag-caagagaagaaaacgttttctgaagaa---aatagACAACtgtgatggtatatggag i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76425124 235 + 151834684 TGGTCTTGAGCTGGGATGCTAATGACAGTGAAAATGATGAGACTTGATGAGGCCATGTAAGCAGAGTTGCACAGAGGAGTCCTAGGACCCTCTGCATGGGGGCATGAAGCAGCTG---TGCTGTCA-CAAGTGATAGTGAGAAGAAGAC-------------CCTGTGACAAGAGGACAATAGGGCAACATTGTATCTT----------AGAAGAGAATGCTTCGTGCAGCAGAGAAAGCACAACCACAGTGGCTTTGGAAG i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4102184 190 - 5279953 tgggcatagagatgggacct------gaataaggccat----ttagggagaaat-tct-----taga------gaagagccctacgacactccatgattcgaggttaagcaaaggagaaggaatcagcaaa------tgagaagtg----------------cct------agtgaacaa-------a---gatgtcccagaagccaagagaagaaaatgttttaggaaggaggaagtggacaactggag------------ i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1878830 2055 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e otoGar3.GL873602 8625561 161 + 8790067 I e canFam3.chr13 48011395 328 + 63241923 I a score=108695.000000 s hg38.chr4_KI270787v1_alt 73529 11 + 111943 atggcaccttt s panTro5.chr4 119638203 11 - 194502333 atggcaccttt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121051617 11 - 195804263 atggcaccttt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4482858 10 - 17550833 atggca-cttt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69356259 11 - 118206036 atggcaccttt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111565381 11 - 190429646 atggggccttt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110734570 11 - 189454096 atggggccttt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13301064 11 + 26754465 atggggccttt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4202619 11 - 5137665 atggggccttt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122912235 11 - 135778131 atggggccttt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2024305 11 + 2427316 atggggccttt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1319568 11 + 1448899 atgggcccttt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53029627 11 - 190850796 atggggccttt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8189834 11 - 15139346 atggggccttt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6975886 11 - 7304997 atggggccttt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9391583 11 - 11631747 atggggccttt i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76425359 11 + 151834684 ATGGGGTCTTT i mm10.chr5 C 0 I 9 e proCoq1.NW_012140747v1 1878830 2055 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e dasNov3.JH568349 4102374 0 - 5279953 C e otoGar3.GL873602 8625561 161 + 8790067 I e canFam3.chr13 48011395 328 + 63241923 I a score=807597.000000 s hg38.chr4_KI270787v1_alt 73540 85 + 111943 ggaaggtgatttggtcatcagggtggagccctcgctatgggattagtgcccgtatcaaaggacgcatcagagcttgcctcctctc-- s panTro5.chr4 119638214 85 - 194502333 ggaaggtgatttggtcatcagggtggagccctcgctatgggattagtgcccgtatcaaaggacacatcagagcttgcctcctctc-- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121051628 85 - 195804263 ggaaggtgatttggtcatcagggtggagccctcgctatgggattagtgcccgtatcaaaggacacatcagagcttgcctcctctc-- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4482868 84 - 17550833 ggaaggtgatttggtcatcagggtggagccctcg-gatgggattagtgcccttatcaaaggacacatcagagcttgcctcctctc-- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69356270 85 - 118206036 ggaaggtgatttggccatcaaggtggagccctcgagatgggattagtgcccttatcaaaggacacatcagagcttgcctcctcTC-- i nomLeu3.chr9 C 0 I 1512 s rheMac8.chr5 111565392 85 - 190429646 ggaaggtgatttggtcatcagggtggagccgtcgtgatgggactagtgcccttatcaaaggacacatgagagcttgcctcctttc-- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110734581 85 - 189454096 ggaaggtgatttggtcatcagggtggagccgtcgtgatgggactagtgcccttatcaaaggacacatgagagcttgcctcctttc-- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13301075 85 + 26754465 ggaaggtgatttggtcatcagggtggagccgtcgtgatgggactagtgcccttatcaaaggacacatgagagcttgcctcctttc-- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4202630 85 - 5137665 ggaaggtgatttggtcatcagggtggagccgtcgtgatgggactagtgcccttatcaaaggacacatgagagcttgcctcctctc-- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122912246 85 - 135778131 ggaaggtgatttggtcatcagggtggagccctcgtgatgggactagtgcccttatcaaaggacacatgagagcttgcctcctctc-- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2024316 85 + 2427316 ggaaggtgatttggtcatcagggtggagccgtcatgatgggactagtgcccttatcaaaggacacatgagagcttgcctcctctc-- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1319579 85 + 1448899 ggaaggtgatttggtcatcagggtggagccctcgtgatgggactagtgcccttatcaaaggacgcatgagagcttgcctcctctc-- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53029638 87 - 190850796 ggaagatgatttggtcatcagggtgcagccgtcacagtgggattagtgcccttataaaaggacacatgagcgcttgcttcctctctc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8189845 87 - 15139346 ggaaggtgatttggtcatcagggtgcagccctcacaatgggattaatgcccttataaaaggacacatgagcacttgcttcctctctc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6975897 87 - 7304997 ggaagatgatttggtcatcagggtgcagccctcacaatgggattagtgcccttataaaaggacacatgagcacttgcttcctctttc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9391594 87 - 11631747 ggaaggtgatttggtcttcagagtgcagccctcacaatgggattagtgcccttataaaaggatacatgagcgcttgcttcctctctc i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1878830 2055 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76425370 9 + 151834684 I e dasNov3.JH568349 4102374 0 - 5279953 C e otoGar3.GL873602 8625561 161 + 8790067 I e canFam3.chr13 48011395 328 + 63241923 I a score=969046.000000 s hg38.chr4_KI270787v1_alt 73625 111 + 111943 tctggtctccaccttgtgaggacacagtgagaagttgccatctgtaagctaggaagcaggccctcgccagaaaccaatcagctggtgccttgctcttggacttccactctc s panTro5.chr4 119638299 111 - 194502333 tctggtctccaccttgtgaggacacagtgagaagttgccatctgtaagctaggaagcaggccctcgccagaaaccaatcagctggtgccttgctctcggacttccactctc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121051713 111 - 195804263 tctggtctccaccttgtgaggacacagtgagaagttgccatctgtaagctaggaagcaggccctcgccagaaaccaatcagctggtgccttgctctcggacttccactctc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4482952 111 - 17550833 tctggtctccaccttgtgaggacacagtgagaagttgccatctgtaagctaggaagcaggccctcgccagaaaccaatcagctggtgccttgctctcggacttccactctc i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111565477 111 - 190429646 tctggtctccaccttgtgaggacacagtaagaagtcaccatctgtaagctaggaagcaggccctagccagaaaccaatcagctggtgccttgctctcagacttccactctc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110734666 111 - 189454096 tctggtctccaccttgtgaggacacagtgagaagtcaccatctgtaagctaggaagcaggccctagccagaaaccaatcagctggtgccttgctctcagacttccactctc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13301160 111 + 26754465 tctggtctccaccttgtgaggacacagtgagaagtcaccatctgtaagctaggaagcaggccctagccagaaaccaatcagctggtgccttgctctcagacttccactctc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4202715 111 - 5137665 tctggtctccaccttgtgaggacacagtgagaagtcaccatctgtaagctaggaagcaggccctagccagaaaccaatcagctggtgccttgctctcagacttccactctc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122912331 111 - 135778131 tctggtctccaccatgtgaggacacagtgagaagtcaccatctgtaagctaggaagcaggccctagccagaaaccaatcagctggtgccttgctctcagacttccactctc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2024401 111 + 2427316 tctggtctccaccttgggaggacacagtgagaagtcaccatctgtaagctaggaagcaggccctagccagaaaccaatcagctgatgccttgctctcagacttccactctc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1319664 111 + 1448899 tctggtctccaccttacgaggacacagtgagaagtcaccatctgtaagctaggaagtaggccctagccagaaaccaatcagctggtgccttgctctcagacttccactctc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53029725 108 - 190850796 tctggtctctgccttgtgaggacacagtgagaagtcaccatttgcaagctaggaagcaggcc---accagaaatcgatcagccggcgccttgctctcagacctccactctc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8189932 108 - 15139346 cctggtctccaccttgtgaggacacagtgagaagtcaccatttgcaagctaggaagtgggcc---accagaaattgatcagtcggcgccctgctctcagacttcctctctc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6975984 108 - 7304997 tctggtctccgccttgtgaggacacagtgagaagtcaccatttgcaagctaggaagcgggcc---accagaaatcgatcagccggcgccttgctctcagacttctactctc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9391681 108 - 11631747 tctggtctccgccttgtgaggacacagtgagaagtcaccatttgcaagctaggaagcgggcc---accagaaattgatcagtcggcacctcgctctcaggcttccactctc i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1878830 2055 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76425370 9 + 151834684 I e dasNov3.JH568349 4102374 0 - 5279953 C e otoGar3.GL873602 8625561 161 + 8790067 I e canFam3.chr13 48011395 328 + 63241923 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=1377321.000000 s hg38.chr4_KI270787v1_alt 73736 161 + 111943 caaaactgtgagaaataagtttttgttgtttaagccattcagtctatggtattatagcaacccaaatggactaagacaACTGAAGCAAAGACATCGAGATGTCTAGaaataagagaagaatctagaaactacaatgggttttttggtcactcagcagtgac s panTro5.chr4 119638410 161 - 194502333 caaaactgtgagaaataagtttttgttgtttaagccattcagtctatggtattatagcaacccaaacggactaagacaACTGAAGCAAAGACATCGAGATGTCTAGaaataagagaagaatctagaaactacaatgggttttttggtcactcagcagtgac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121051824 161 - 195804263 caaaactgtgagaaataagtttttgttgtttaagccattcagtctatggtattatagcaacccaaacggactaagacaactgaagcaaagacattgagatgtctagaaataagagaagaatctagaaactacaatgggttttttggtcactcagcagtgac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4483063 161 - 17550833 cagaactgtgagaaataagtttttgttgtttaagccattcagtctatggtatcatagcaacccaaatggactaagacaACTGAAGCAAAGACATCGAGATGTCTAGAAATAAGAGAAGAATCTAGAAACTACAATGGTTTTTTTGGTCACtcagcagtgac i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111565588 160 - 190429646 cagaactgtgagaaataagtttttgttgtttaagccattcagtctatggtattatagcaacccaaacagactaagacaACTGAAGCAAAGACATCGAGATGTCTAGaaataagagaagaatctagaaactaccatgg-ttttttggtcactcagcagtggc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110734777 160 - 189454096 cagaactgtgagaaataagtttttgttgtttaagccattcagtctatggtattatagcaacccaaacagactaagacaACTGAAGCAAAGACATCGAGATGTCTAGaaataagagaagaatctagaaactaccatgg-ttttttggtcactcagcagtgac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13301271 160 + 26754465 cagaactgtgagaaataagtttttgttgtttaagccattcagtctatggtattatagcaacccaaacagactaagacaACTGAAGCAAAGACATCGAGATGTCTAGaaataagagaagaatctagaaactaccatgg-ttttttggtcactcagcagtgac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4202826 160 - 5137665 cagaactgtgagaaataagtttttgttgtttaagccattcagtctatggtattatagcaacccaaacagactaagacaACTGAAGCAAAGACATCGAGATGTCTAGaaataagagaagaatctagaaactaccatgg-ttttttggtcactcagcagtgac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122912442 160 - 135778131 cagaactgtgagaaataagtttttgttgtttaagccattcagtccatggtattatagcaacccaaacagactaagacaACTGAAGCAAAGACATCGAGATGTCTAGAAATAAGAGAATAATCTAGAAACTACCATGG-TTTTTTGGTCACtcagcagtgac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2024512 160 + 2427316 cagaactgtgagcaataagtttttgttgtttaagccattcagtctatggtattatagcaacccaaacagactaagacaACTGAAGCAAAGACATCGAGATGTCTAGaaataagagaagaatctagaaactaccatgg-ttttttggtcactcagcagtgac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1319775 160 + 1448899 cagaactgtgagaaataagtttttgttgtttgacccattcagtctatggtattatagcaacccaaacagactaagacaACTGAAGCAAAGACATCGAGATGTCTAGAAATAAGAGAAGAATCTAGAAACTACCATGC-TTTTTTGGTCACtcagcagtgac i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53029833 158 - 190850796 cagaactgtgagaaataaggttttgttgtctaagccatccagtctgtggtattatagcaacccaaacagactaagacaACTGAAGCAAAGACA--GAAATGTCTAGAAATAAAAGAAAAATCTAGAAACTACCATGG-CTTTTTGGTCACTTAGCAGTCAC i calJac3.chr3 C 0 I 1327 s saiBol1.JH378162 8190040 157 - 15139346 cagaactgtgagaaataagggttcgctgtttatgccatccagtctgtggtattatagcaacccaaacagattaagacaACTGAAGCAAAGGCA--GAGATGTCTAGaaataagagaaaaatctagaagctaccatgg--tttttggtcactcagcagttgc i saiBol1.JH378162 C 0 I 7 s cebCap1.NW_016107439v1 6976092 157 - 7304997 cagaactgtgagaaataagggttcgttgtttaagtcatccagcctgtggtattatagcaacccaaacagactaaggcaACTGAAGCAAAGACA--GAGATGTCTAGaaataagagaaaaatctagaaactaccatgg--tttttggtcactcagcacttgc i cebCap1.NW_016107439v1 C 0 I 7 s aotNan1.NW_018493494v1 9391789 157 - 11631747 cagaactgtgagaaataaggtttcgttgtttaagccatccagtctgtggtattatagcaacccaaacagactaagacaACTGAAGCAAAGACA--GAGATGTCTAGaaataagagaaaaatctagaaactaccatgg--tttttggtcactcagcagtcgc i aotNan1.NW_018493494v1 C 0 I 7 s dasNov3.JH568349 4102374 56 - 5279953 -------------------------------------------------------------------------------------caaaaatagtgagttttc---gaataagag---aacctaaaaatta----gg------tggtcact----ggtgac i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1878830 2055 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76425370 9 + 151834684 I e otoGar3.GL873602 8625561 161 + 8790067 I e canFam3.chr13 48011395 328 + 63241923 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=978766.000000 s hg38.chr4_KI270787v1_alt 73897 120 + 111943 -ctgacagaggccaccttaccagagtggtgggagcagaggtacaggtggaccaagctgaggagagaccaagagaggagggtgcggaga------ccaccgatgaccctttcaggaagctctgttgtc s panTro5.chr4 119638571 120 - 194502333 -ctgacagaggccaccttaccagagcggtgggagcagaggtacaggtggaccaagctgaggagagaccaagagaggagggtgcggaga------ccaccgatgaccctttcaggaagctctgttgtc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121051985 120 - 195804263 -ctgacagaggccaccttaccagagcggtgggagcagaggtacaggtggaccaagctgaggagagaccaagagaggagggtgcggaga------ccaccgatgaccctttcaggaagctctgttgtc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4483224 120 - 17550833 -ctgagagaggccaccttaccagagcggtgggagcagaggtacaggtggaccaagctgaggagagaccaagagaggagtgtgcagaga------ccaccgatgaccctttcaggaagctctgttgtc i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111565748 120 - 190429646 -ttgacagaggccaccttaccagagcggtgggagcagaggtaccggtggaccgagctgaggagagaccaagagaggagggtgtggaga------ccaccgatgaccctttcaggaagctctgttgtc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110734937 120 - 189454096 -ttgacagaggccaccttaccagagcggtgggagcagaggtaccggtggaccgagctgaggagagaccaagagaggagggtgtggaga------ccaccgatgaccctttcaggaagctctgttgtc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13301431 120 + 26754465 -ttgacagaggccaccttaccagagcggtgggagcagaggtaccggtggaccgagctgaggagagaccaagagaggagggtgtggaga------ccaccgatgaccctttcaggaagctctgttgtc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4202986 120 - 5137665 -ttgacagaggccaccttaccagagcggtgggagcagaggtaccggtggaccgagctgaggagagaccaagagcggagggtgtggaga------ccaccgatgacgctttcaggaagctctgttgtc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122912602 120 - 135778131 -ttgacagaggccaccttaccagagtggtgggagcagaggtacaggtggaccgaggtgaggagagaccaagagaggagggtgtagagg------ccactgatgaccctttcaggaagctctgttgtc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2024672 120 + 2427316 -ttgacagaggccaccttaacagagcggtgggagcagaggtacaggtggaccgagctgaggacagaccaagagaggagggtgtggaga------ccaccgatgacgctttcaggaagctctgttgtc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1319935 120 + 1448899 -ttgacagaggccaccttaccagagtggtgggagcagaggtacaggtggaccgagctgaggagagaccaagagaggagggtgtggaga------ccaccgatgaccctttcaggaagctctgttgtc i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8190204 115 - 15139346 -ttgatagaggccgcctcaccaaagcagtgggagcagaggcgcaggcggattgaact---gagagaccaagaagggagggtgtggaga------ccaccagtga--ctttcaggaagctctgttgtc i saiBol1.JH378162 I 7 C 0 s cebCap1.NW_016107439v1 6976256 120 - 7304997 -ttgacagaggccacctcaccaaagcggtgggagcagaggtacaggtagactgaactgaggagagaccaagaagggagggtgtggaga------ccactgatgactctttcaggaagctctgttgtc i cebCap1.NW_016107439v1 I 7 C 0 s aotNan1.NW_018493494v1 9391953 120 - 11631747 -ttggcagaggtcacctcaccaaagcggtgggagcagaggtgcaggtggactgaactgaggagagaccaagaagggagggtgtggaga------ccacagacgactacttcaggaagctctgttgtc i aotNan1.NW_018493494v1 I 7 C 0 s dasNov3.JH568349 4102430 127 - 5279953 cttgacagaggaagcgttgagggagtggtgggagcagaagcccagctggaatgagctgaggagggaatgtgagaggaggaagtggagatggtgtctggggacaattctttcaagatggtttgctggt i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1878830 2055 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76425370 9 + 151834684 I e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8625561 161 + 8790067 I e canFam3.chr13 48011395 328 + 63241923 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=6230483.000000 s hg38.chr4_KI270787v1_alt 74017 747 + 111943 aagaggagcagagcaacagagtggtagctaacgggctgggga----tggggagtatggaaggttttctttgcgtctgttga---aaaaaatgaaatctcttgggcatatctgcatgccgaagggaaggatctaggagagagggag-aggctaaa--cgt----gggac----agagTCACCACAGCA------GCAGgc-----------------------cacaccctgttctaagcatttcccagaaacttactcctttaaccttcacaacaactctgtgaaggagatagcat--taactccagattttacagatgggacaactgaggcatggagaaattacataattttcctaaactcatcaa-ctt-----------gca-----------------------------------------------ttggctgccaaggcaaactactacagaagccgtgtccccaacaaatgacagaggatgggaccagggcatgtgaggagaggctggcatttgacaggctcagggacacctcctccac--agaca-ggaatg-gatggagactatggttacagatggagggaagttatgtaatggagccatgatggaatgaagaggggctcctgctttcttacttgtttttactaagcactgtataaggc----aagaccatcagatcaaaacca---ag---gggagagaatttaggagagaagaaaagaagtgaaatcgtcacttcagagaatgagaatactaacatattaaggaaataaagtacaatgatggtgca-------------------------tggctatacaccacgcagacagactagctaacacgtttgagagg---------------tatttcctccatattattcagctgttc s panTro5.chr4 119638691 747 - 194502333 aagaggagcagagcaacagagtggtagctaacgggctgggga----tggggagtatggaaggttttctttgcgtctgttga---aaaaaatgaaatctcttgggcatatccgcatgccgaagggaaggatctaggagagagggag-aggctaac--cgt----gggac----agagTCACCACAGCA------GCAGgc-----------------------cacaccctgttctaagcatttcccagaaacttactcctttaaccttcacaacaactctgtgaaggagatagcat--taactccagattttacagatgggacaactgaggcatggagaaattacataattttcctaaactcatcca-ctt-----------gca-----------------------------------------------ttggctgccaaggcaaactactacagaagccgtgtccccaacaaatgacagaggatgggaccagggcatgtgaggagaggctggcatttgacaggctcagggacacctcctccac--agaca-ggaatg-gatggagactatggttacagatggagggaagttatgtaatggagccatgatggaatgaagaggggctcctgctttcttacttgtttttactaagcactgtataaggc----aagaccatcagatcaaaacca---ag---gggagagaatttaggagagaagaaaagaagtgaaatcgtcacttcagagaatgagaatactaacatattaaggaaataaagtacaatgatggtgca-------------------------tggctatacaccacgcagacagactagctaacacgtttgagagg---------------tatttcctccatattattcagctgttc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121052105 747 - 195804263 aagaggagcagagcaacagagtggtagctaacgggctgggga----tggggagtatggaaggttttctttgcgtctgttga---aaaaaatgaaatctcttgggcatatctgcatgccgaagggaaggatctaggagagagggag-aggctaac--cgt----gggac----agagTCACCACAGCA------GCAGgc-----------------------cacaccctgttctaagcatttcccagaaacttactcctttaaccttcacaacaactctgtgaaggagatagcat--taactccagattttacagatgggacaactgaggcatggagaaattacataattttcctaaactcatcca-ctt-----------gca-----------------------------------------------ttggctgccaaggcaaactactacagaagccgtgtccccaacaaatgacagaggatgggaccagggcatgtgaggagaggctggcatttgacaggctcagggacacctcctccac--agaca-ggaatg-gatggagactatggttacagatggagggaagttatgtaatggagccatgatggaatgaagaggggctcctgctttcttacttgtttttactaagcactgtataaggc----aagaccatcagatcaaaacca---ag---gggagagaatttaggagagaagaaaagaagtgaaatcatcacttcagagaatgagaatactaacatattaaggaaataaagtacaatgatggtgca-------------------------tggctatacaccacgcagacagactagctaacacgtttgagagg---------------tatttcctccatattattcagctgttc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4483344 747 - 17550833 aagaggagcagagcaacagagtggtagctaacgggctgggga----tggggagtatggaaggttttctttgcgtctgttga---aaaaaatgaaatctcttgggcatatctgcatgccgaagggaaggatctaggagagagggag-aggctaac--cgt----gggac----agagTCACCACAGCA------GCAGgc-----------------------cacaccctgttctaagcacttcccagaaacttattcctttaaccttcacaacaactctgtgaaggagatagcat--taactccacattttacagatgggacaactgaggcacggagaaattacataattttcctaaactcatcca-ctt-----------tca-----------------------------------------------ttggctgccaaggcaaactactacagaagccgtgtccccaacaaatgacagaggatgggatcagggcatgtaaggagaggctggcatttgacaggctcagggacacctcctccac--agaca-ggaatg-gatggagactatggttacagatggagggaagttatgtaatggagccatgatggaaagaagaggggctcctgctttcttacttgtttttactaagcactgtataaggc----aagaccatcagatcaaaacca---ag---gggagagaatttaggagagaagaaaagaagtgaaatcgtcacttcagagaatgagaatactaacatattaaggaaataaagtacaatgatggtgca-------------------------tggctatacaccacgcagacagactagctaacacgtttgagagg---------------tatttcctccatattattcagctgttc i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111565868 741 - 190429646 aagaggagcagagcaatggagtggtagctaatgggt----------tggggagtatggaaggttttgtttgcgtctgttga---aaaaaatgaaatctcttgggcatgtctgcatgccaaagggaaggatctaggagagagggag-aggctgac--cat----gggac----agagTCACCACAGCA------GCAGgc-----------------------cacaccctgttctgagcatttcccagaaacttactcctgtaaccttcacaacaactctgtgaaggagacagcat--taactccacactttacagatgggacaactgaggcacggagaagttacataattttcctaaactcatcca-CTT-----------GCA-----------------------------------------------TTGGCTGCCAAGGCAAACTactacgggagctgtgtccccaagaagtgacagaggatgggaccagggcatgtgaggagaggctggcatttgacgggctcagggacacctcctccac--agaca-ggaatgagatggagactatggttacagatggagggaagttatgtaatggagctatgatggaatgaagaggggctcctgctttcttatttgtttttactaagtactgtataaggc----aagaccatcaagt-gaaacca---ag---gggagaaaatttaggagagaagaaaagaagttaaatcatcacttcagagaatgagaatactaacatattacggaaataaagtacgatgatggtgca-------------------------tggccatacaccatgcagacagactagctaacacacttgagagg---------------tatttcctccatattattcagctgttc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110735057 741 - 189454096 aagaggagcagagcaatggagtggtagctaatgggt----------tggggagtatggaaggttttgtttgcgtctgttga---aaaaaatgaaatctcttgggcatgtctgcatgccaaagggaaggatctaggagagagggag-aggctgac--cat----gggac----agagTCGCCACAGCA------GCAGgc-----------------------cacaccctgttctgagcatttcccagaaacttactcctgtaaccttcacaacaactctgtgaaggagacagcat--taactccacactttacagatgggacaactgaggcacggagaagttacataattttcctaaactcatcca-CTT-----------GCA-----------------------------------------------TTGGCTGCCAAGGCAAACTactacgggagctgtgtccccaagaagtgacagaggatgggaccagggcatgtgaggagaggctggcatttgacgggctcagggacacctcctccac--agaca-ggaatgagatggagactatggttacagatggagggaagttatgtaatggagctatgatggaatgaagaggggctcctgctttcttatttgtttttactaagcactgtataaggc----aagaccatcaagt-gaaacca---ag---gggagaaaatttaggagagaagaaaagaagttaaatcatcacttcagggaatgagaatactaacatattacggaaataaagtacgatGATGGTGCA-------------------------TGGCCATACACCATGCAGACAGACTAGCTAACACACTTGAGAGG---------------TATTTCCTCCATATTATTCAGCTGTTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13301551 741 + 26754465 aagaggagcagagcaatggagtggtagctaatgggt----------tggggagtatggaaggttttgtttgcgtctgttga---aaaaaatgaaatctcttgggcatgtctgcatgccaaagggaaggatctaggagagagggag-aggctgac--cat----gggac----agagTCGCCACAGCA------GCAGgc-----------------------cacaccctgttctgagcatttcccagaaacttactcctgtaaccttcacaacaactctgtgaaggagacagcat--taactccacactttacagatgggacaactgaggcacggagaagttacataattttcctaaactcatcca-CTT-----------GCA-----------------------------------------------TTGGCTGCCAAGGCAAACTactacgggagctgtgtccccaagaagtgacagaggatgggaccagggtatgtgaggagaggctggcatttgacgggctcagggacacctcctccac--agaca-ggaatgagatggagactatggttacagatggagggaagttatgtaatggagctatgatggaatgaagaggggctcctgctttcttatttgtttttactaagcactgtataaggc----aagaccatcaagt-gaaacca---ag---gggagaaaatttaggagagaagaaaagaagtgaaatcatcacttcagggaatgagaatactaacatattaaggaaataaagtacgatgatggtgca-------------------------tgcccatacaccatgcagacagactagctaacacacttgagagg---------------tatttcctccatattattcagctgtgc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4203106 741 - 5137665 aagaggagcagagcaatggagtggtagctaatgggt----------tggggagtatggaaggttttgtttgcgtctgttga---aaaaaatgaaatctcttgggcatgtctgcatgccaaagggaaggatctaggagagagggag-aggctgac--cat----gggac----agagTCGCCACAGCA------GCAGgc-----------------------cacaccctgttctgagcatttcccagaaacttactcctgtaaccttcacaacaactctgtgaaggagacagcat--taactccacactttacagatgggacaactgaggcacggataagttacataattttcctaaactcatcca-CTT-----------GCA-----------------------------------------------TTGGCTGCCAAGGCAAACTactacgggagctgtgtccccaagaagtgacagaggatgggaccagggcatgtgaggagaggctggcatttgacgggctcagggacacctcctccac--agaca-ggaatgagatggagaccatggttacagatggagggaagttatgtaatggagccatgacggaatgaagaggggctcctgctttcttatttgtttttactaagcactgtataaggc----aagaccatcaagt-gaaacca---ag---gggagaaaatttaggagagaagaaaagaagtgaaatcatcacttcagggaatgagaatactaacatattaaggaaataaagtacgatggtggtgca-------------------------tggccatacaccatgcagacagactagctaacacacttgagagg---------------tatttcctccatattattcagctgttc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122912722 741 - 135778131 aagaggagcagagcaatggagtggtaactaatgggt----------tggggagtatggaaggttttgtttgcgtctgttga---aaaaaatgaaatctcttgggcatgtctgcatgccaaagggaaggatctaggagagagggag-aggctgac--cat----gggac----agagTAGCCACAGCA------GCAGAc-----------------------cacaccctgttctgagcatttcccagaaacttactcctgtaaccttcacaacaactctgtgaaggagacagcat--taactccacactttacagatgggacaactgaggcacggagaagttacatgattttcctaaactcatcca-TTT-----------TCA-----------------------------------------------TTGGCTGCCAAGGCAAACTactacaggagctgtgtccccaagaagtgacagaggatgggaccagggcatgtgaggagaggctggcatttgacgggctcagggacacctcctccac--agaca-ggaatgagatggagactatggttacagatggagggaagttatgtaatggagccatgatggaatgaagaggggcttctgctttcttatttgtttttactaagcactgtataaggc----aagaccatcaagt-gaaacca---ag---gggagaaaatttaggagagaagaaaagaagtgaaatcatcacttcagggaatgagaatactaacatattaaggaaataaagtacgatGATGGTGCA-------------------------TGGCCATACACCATGCAGACAGACTAGCTAACACACTTGAGAGG---------------TATTTCCTCCATGTTATTCAGCTGTTC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2024792 741 + 2427316 aaaaggagcagagcaatggagtggtagctaatgggt----------tggagagtatggaaggttttgtttgcatctgttga---aaaaaatgaaatctcttgggcatgtctgcatgccaaagggaaggatctaggagagagggag-aggctgac--cat----gggac----agagTCGCCACAGCA------GCAGgc-----------------------cacaccctgttctgagcatttcccagaaacttactcctgtaaccttcacaacaactctgtgaaggagacagcat--taactccacactttacatatgggacaactgaggcacggataagttacataattttcctaaactcatcca-CTT-----------GCA-----------------------------------------------TTGGCTGCCAAGGCAAACTactacaggagctgtgtccccaagaagtgacagaggatgggaccagggcatgtgaggagaggctggcatttgacgggctcagggacacctcctccac--agaca-ggaatgagatgaagactatggttacagatggagggaagttatgtaatggagccatgatggaatgaagaggggctcctgctttcttatttgtttttactaagcactgtataaggc----aagaccatcaagt-gaaacca---ag---gggagaaaatttaggagagaagaaaagaagtgaaatcatcacttcagggaatgagaatactaacatattaaggaaataaagtacgatgatggtgca-------------------------tggccatacaccatgcagacagactagctaacacacttgagagg---------------tatttcctccatattattcagctgttc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1320055 734 + 1448899 aagaggagcagagcaacagagtggtagctaacgggt----------tggggagtatggaaggttttgtttgcatctgttga---aaaaaatgaaatctcttgggcatgtctgcatgccaaagggaaggatctaggagagagggag-aggctgat--cat----gggac----ggagTCGCCACAGCA------GCAGgc-----------------------cacaccctgttctgagcatttcccagaaacttactcctgtaaccttcacaacaactctgtgaaggagacggcat--taactccacactttacagatgggacaactgaggcacggagaagttacataattttcctaaactcatcca-CTT-----------GCA-----------------------------------------------TTGGCTGCCAAGGCAAACTactacaggagctgtgtccccaagaagtgacagaggatgggaccagggcatgtgaggagaggctggcatttaacgggctcagggacacctcctccat--agaca-ggaatgagatggagactatggttacagatggagggaagttatgtcatggagccatgatggaatgaagaggggctcctgcgttcttatttgtttttactaagcactgtataaggc----aagaccatcaagt-gaaacca---ag---gggagagaatttaggagagaagaaaagaagtgaaatcatcacttcagggaatgagaatactaacatattaaggaaataaagtacgatgatggtgca-------------------------cggccatacaccatgcagacagactagctaacac-------agg---------------tatttcctccatattattcagctgttc i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8190319 747 - 15139346 aagaggagcagagcaacagagtggtagctacggggctgggga----tggggagtatggaaggttttgtccgcatctgttga---gaaaaatgaaatctctcaggcatgtctgcacgctgaagggaaggatctaa--gagagggag-aggctgac--cac----gggat----gcagTCA-CACAGCA------Gcaggc-----------------------aacaccctgttttgagcttttctcagaaacctgctcctttaacctctacaacaactctgtgaaggagatagcat--taactccacattttacagatggaacaactgaggcacagagaagttacgtaattttcctaaactcaTCTA-CTT-----------GCA-----------------------------------------------CTGACTGCCAAGGCAAACTactacaggagccgtgttcctgagaagtgacagagaatggggccagggcatgtgaggagaggctggcattcaatgggctcagggatacctcctccgcagagaca-ggaatatgatggagactatggctacagatggagggaagccatgtaatggagctgggatggaatgaagaagagctcctgctttcttattcgtctttactaagcactgtat---gctttgaagaccatcagat-caaagca---ag---gggagagaatttaggagagaagacaagaagtgaaatcaccactttgaggaatggtaacactaacatattaaggaaataaaatacagtgatggtaca-------------------------tggccatacaccatgcagacagactagctaacatgcttgagagg---------------tatttcctccatattattcagccgttc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6976376 745 - 7304997 aagaggatcagagcaacagagtggtagctatggagctgggga----tggggagtatggaaggttttgtctgcatctgttga---aaaaaatgaaatgtgttgggcatgtctgcatgctgaagggaaggatctag--gaaagggag-aggatgac--cat----gGGAC----ACAGTTGCCACAGCA------Gcaggc-----------------------aacaccctgttctgagcttttctcagaaaa--gtttctttaacctttacaacaactctgtgaaggagatggcat--taactccacattttacagatgggataactgaggcacggagaagttacataattttcctaaactcaTCTA-CTT-----------GCA-----------------------------------------------TTGGCTGCaaaggcaaactactacaggagcccttttcctgagaagtgacaaagaataggaccagggcatgtgaggagaggctggcattcaacgggctcagggatacctcctccacggagaca-ggaatgtgatggagactatggctacagatggagggaagctatgtaacggagctgggatggaacgaagaggggctcctgctttcttatttgtctttactaagcactgtataaggc----aagaccatcagat-caaagca---ag---gggagagaatttaggagagaagacaagaagtgaaatcatcacttcgaggaatgataatactaacatattaaggaaataaagtacagtgatggtgca-------------------------tggccatacacaatgcagacagactagctaacatgcttgagagg---------------tatttcctccatattatacagctgttc i cebCap1.NW_016107439v1 C 0 I 4 s aotNan1.NW_018493494v1 9392073 747 - 11631747 aagaggagcagagcaacagagtggtagctacggggctggggc----tggggagtatggaaggttttgtctgcatctgctga----aaaaatgaaatctctcgggcatgtctgcatgctgaagggaaggatctaggagagagggag-aggctgaC--CGT----GGGAC----ACAGTCGCCACAGCA------Gcaggc-----------------------aacaccctgttctgagcttttctcagaaacctgctcctttaacctttacaacaactc-gtgaaggagatagcat--taactccacattttacagatgggacaactgaggcacggaaaagttacaaaattttcctaaactcaTCTA-TTT-----------GCA-----------------------------------------------TTGGCTTCCAAGGCAAACTactacaggagccgtgttcctgagaagtgacagagagtgggaccagggcatgtgaggagaggctggcattcaacgggctcagggatacctcctccacagagaca-tgaacgtgatggagactatggctacagttggagggaagctatgtaatggagccaggatggaatgaagaggggctcctgctttcctatttgtctttactaagcactgtataaggc----aagaccatcagat-caaagca---ag---gggagagaatttaggagacaagataagaagtgaaatcatcactttgaggaatgataatactaacatattaaggaaataaagtacagtgatggtgca-------------------------tggccatacaccatgcagacagactagctaacatgcttgagagg---------------tgtttcctccatattattcagctgttc i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48011723 777 + 63241923 aaaagaagaaga--agctttgtagtgggta--gggctagggaaatgtgcagagaaggaaaggttctgttt--atctgcttattgaagacaggaaattactagagcatgtctgtatgctgaagagaaggatccag--gagagggaG--GGCTGAC--TGTGCCAGGGGCACTTAGTGCAGGCACagcccttgctgtgagc-----------------------ctcaccctgtcccaagaggctcagggaatcctcctt-tttaatctgc---gtgagcctgggaagtaggtaacat--taacactgcatattatagatgggacaactgaggtacacaaatgttacataatccctttaaggtcatgca-cctaggaggaggtagcag--agccaagactcacactcaagtagtctgtctggtg-gctgtgtacttagccaTGAAGGCAAGCTACTGTGGGAGCCCCGTCCCCAAGAAATG-------------CAACAgcacaggaagagagcttggtgttcaacatgctcaggaatacttcatctgcagagaca-ggagtggcatggaaactctgattacaaat-------agctgtctgatgagg------------------gggttcctgctttatcttgtatctttattaagcagtacccaaggc----aagattatcaaat-gaatgta---agtgaggagaagaatttaggagagaggaaaagaagtgaagtagtcacattagggaggaaggaagctaatacactgaggaaataaagtagcataatggtgca------------------------gtagccaagaaatttaaagagaaactggctaacacacttgag-tg---------------ccttttctccatgtgttttagctgttt i canFam3.chr13 I 328 C 0 s dasNov3.JH568349 4102557 838 - 5279953 aagaggagcagagaaacgtaatggtagctggaagggaatg------tgaaaag-aggaaaggttttcttt------gttta---agaaatgaaaattactggagtatgtctgaatgctggagagaatgatccagtagttagggaggaggctgacagcgc----agagg----agagcaggagcagaa------gctaacactgatacagccctgatgtgtggctgaccctgttctaagcattttacttaagtacactcctttaaccttc---ccaactatgttcggaaaataatatcccacatccacattttacagcagtggtaactgaggcacagagaagtgacatcat-tacctaagctcacacagcca-----------gcaggtggcagaagttcacgctggagcagtctgccccctgagccaactacttagcccctgaggcaaaccatggcaagagctctgtccaaaagaagtgaaagggattaggaccagggcaaaagcgaagagactggctttccataaagtcaggggtagcttatccac--ataagtggagtg-aaagcagactct-attacagaggaagggaagacactcgattccgctatcaaagaatgaggggtggttctaggcttttta-------ttact------tctataaacc----aacatcatcagat-taaagcatgtag---gaagaagaaggtaagagagaaaaagagaagtgaaatcatcacttcagagagtgggaaagctaacatattagggaaataaagtagggttttgttacagtggagagtaccagtttgacatttgtgaccatgaatt-taaggggaggctagctaacatgcttgtgtggggtttgttttggttttttttcctccatgttattcagctgctc i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1878830 2055 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76425370 9 + 151834684 I e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8625561 161 + 8790067 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=1162177.000000 s hg38.chr4_KI270787v1_alt 74764 160 + 111943 ------aggttcccagtttatacaggtt----t----gagagagagaga---gaggagggagagaggaagaggataaggatatttgtagaagtatggttatagtgaaaaaccaagggatctaagttggatatggaga--------gaaccaaccacaggagcagaaagcatgacagtaaagaaac s panTro5.chr4 119639438 160 - 194502333 ------aggttcccagtttatacaggtt----t----gagagagagaga---gaggagggagagaggaagaggataaggatatttgtagaagtatggttatagtgaaaaaccaagggatctaagttggatatggaga--------gaaccaaccacaggagcagaaagcatgacagtaaagaaac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121052852 160 - 195804263 ------aggttcccagtttatacaggtt----t----gagagagagaga---gaggagggagagaggaagaggataaggatatttgtagaagtatggttatagtgaaaaaccaagggatctaagttggatatggaga--------gaaccaaccacaggagcagaaagcatgacagtaaagaaac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4484091 160 - 17550833 ------aggttcccagtttatacaggtt----t----gagagagagaga---gaggagggagagaggaagaggataaggatatctgtagaagtatggttatagtgaaaaaccaggggatctaagttggatatggaga--------gaaccaaccacaggagcagaaagcatgacagtaaagaaac i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111566609 154 - 190429646 ------agattcccagtttatacaggtt----t----gagaga---------gaggagggagagaggaggaggataaggatatttgtagaagtatggttatagtgaaaaaccaagggatctaagttggatatggaga--------gaaccaaccacaggagtagaaagcatgacagtaaagagac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110735798 154 - 189454096 ------AGATTCCCAGTTTATACAGGTT----T----GAGAGA---------gaggagggagagaggaggaggataaggatatttgtagaagtatggttatagtgaaaaaccaagggatctaagttggatatggaga--------gaaccaaccacaggagtagaaagcatgacagtaaagagac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13302292 154 + 26754465 ------agattcccagtttatacaggtt----t----gagaga---------gaggagggagagaggaggaggataaggatatttgtagaagtatggttatagtgaaaaaccaagggatctaagttggatatggaga--------gaaccaaccacaggagtagaaagcatgacagtaaagagac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4203847 158 - 5137665 ------agattcccagtttatacaggtt----tgagagagaga---------gaggagggagagaggaggaggataaggatatttgtagaagtatggttatagtgaaaaaccaagggatctaagttagatatggaga--------gaaccaaccacaggagtagaaagcatgacagtaaagagac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122913463 163 - 135778131 ------AGATTCCCAGTTTATACgggtt----t----gagagagagagagaggaggagggagagaggaggaggataaggatatttgtagaagtatggttatagtgaaaaaccaagggatctaagttggatatggaga--------gaaccaaccacaggagtagaaagcatgacagtaaagagac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2025533 154 + 2427316 ------agattcccagtttatacaggtt----t----gagaga---------gaggagggagagaggaggaggataaggatatttgtagaagtatggttatagtgaaaaaccaaaggatctaagttggatatggaga--------gaagcaaccacaggagtagaaagcatgacagtaaagagac i manLeu1.NW_012104388v1 C 0 I 2 s colAng1.NW_012119221v1 1320789 160 + 1448899 ------agattcccagtttatacaggtt----t----gagagagagaga---gaggagggagagaggaggaggataagaatatttgtagaagtatgattatagtgaaaaaccaagggatctaagttggatgtggaga--------gaaccaaccacaggagtagaaagcatgacagtaaagagac i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8191066 157 - 15139346 ------cggttcccagtttacacaggtt----a----gagagagaga-----gaggagggagggaggaggaggg-aaggatatttgtagaagtatggttacagtgaaaggccaagggatctaagctggatatggaga--------gaaccaaccacaggagcagaaaccatgacaataaagagac i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9392820 161 - 11631747 ------cggttcccagtttacacaggttagaga----gagagagaga-----gaggagggagagagaaggaggg-aaggatatttgtagaagtgtggttatagcgaaagaccaagggatctaagctggatatggaga--------gaaccaaccacaggagtggaaaccatgacagtaaagagac i aotNan1.NW_018493494v1 C 0 I 8 s canFam3.chr13 48012500 145 + 63241923 ------gggtt-----------caggct----t----gagaga---------ga-gacggagacagga-gagggtgagaatatttgcaggggtgtgactgtagtgagaa--caaaggatctaagctggatatggagatatggagggaaccaacaataaaagcagaaagaataatagtagaaga-- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4103395 158 - 5279953 aggttcaagttcagaatttttctagatt----t----cacagagagg-----gaggcaggaga------ggaggtaagaatatttgcaagggcatcattatagtgaaaggcgaaggaatgtaagctgaatgtggagg--------gaaccaaggactggagcagaaagaacaactgttacacaaa i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1878830 2055 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76425370 9 + 151834684 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8625561 161 + 8790067 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=71575.000000 s hg38.chr4_KI270787v1_alt 74924 14 + 111943 agagagagagaggt s panTro5.chr4 119639598 14 - 194502333 agagagagagaggt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121053012 14 - 195804263 agagagagagaggt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4484251 14 - 17550833 agagagagagaggt i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111566763 14 - 190429646 agagagagagaggt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110735952 14 - 189454096 agagagagagaggt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13302446 14 + 26754465 agagagagagaggt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4204005 14 - 5137665 agagagagagaggt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122913626 14 - 135778131 agagagagagaggt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2025689 14 + 2427316 agagagagagaggt i manLeu1.NW_012104388v1 I 2 C 0 s colAng1.NW_012119221v1 1320949 14 + 1448899 agagagagagaggt i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8191223 10 - 15139346 --agggtggggg-- i saiBol1.JH378162 C 0 C 0 s canFam3.chr13 48012645 14 + 63241923 aaaaaatgagagga i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4103553 4 - 5279953 --agaa-------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1878830 2055 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76425370 9 + 151834684 I e aotNan1.NW_018493494v1 9392981 8 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8625561 161 + 8790067 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=1150966.000000 s hg38.chr4_KI270787v1_alt 74938 157 + 111943 gggtccatggatgagaggtcccaatggaactgaggcactgttggaat-gggagaaccagagca--cacaggctggaggcatagaagagcctggttgggagatgaatgc-ta-cagtagagattttgggaatagtccagttat------tataaagatcaacatt-agac s panTro5.chr4 119639612 157 - 194502333 gggtccatggatgagaggtcccaatggaactgaggcactgttggaat-gggagaaccagagca--cacaagctggaggcatagaagagcctggttgggagatgaatgc-ta-cagtagagattttgggaatagtccagttat------tataaagatcaacatt-agac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121053026 157 - 195804263 gggtccatggatgagaggtcccaatggaactgaggcactgttggaat-gggagaaccagagca--cacaagctggaggcatagaagagcctggttgggagatgaatgc-ta-cagtagagattttgggaatagtccagttat------tataaagatcaacatt-agac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4484265 157 - 17550833 gggtccatggatgagaggtcccaatggaactgaggcactgttggaat-gggagaaccagagca--cacaagctggaggcatagaagagcttggttgggagatgaatgc-tt-cagtagagattttgggaatagtccagttat------tataaagatcaacatt-agac i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111566777 157 - 190429646 gggtccatgggtgagaggtcccagtggagctgaggcactgttggaat-gggagaaccagagca--cacaagctagaggcatagaagagcctggctgggagatgaatac-tt-cagtagagatttggggaatagtccagttat------tataaagatcaacatt-agac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110735966 157 - 189454096 gggtccatgggtgagaggtcccagtggagctgaggcactgttggaat-gggagaaccagagca--cacaagctagaggcatagaagagcctggctgggagatgaatac-tt-cagtagagatttggggaatagtccagttat------tataaagatcaacatt-agac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13302460 157 + 26754465 gggtccatgggtgagaggtcccagtggagctgaggcactgttggaat-gggagaaccagagca--cacaagctagaggcatagaagagcctggctgggagatgaatac-tt-cagtagagatttggggaatagtccagttat------tataaagatcaacatt-agac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4204019 157 - 5137665 gggtccgtggatgagaggtcccagtggagctgaggcactgttggaat-gggagaaccagagca--cacaagctagaggcatagaagagcctggctgggagatgaatac-tt-cagtagagatttggggaatagtccagttat------tataaagatcaacatt-agac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122913640 157 - 135778131 gggtccgtgggtgagaggtcccagtggagctgaggcactgttggaat-gggagaaccagagca--cacaagctagaggcatagaagagcctggttggaagatgaatac-tt-cagtagagatttggggaatagtccagttat------tataaagatcaacatt-agac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2025703 157 + 2427316 gggtccgtgggtgagaggtcccagtggagctgaggcactgttggaat-gggagaaccagagca--cacaagctagaggcatagaagagcctggctgggagatgaatac-tt-cagtagagatttggggaatagtccagttat------tataaagatcaacatt-agac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1320963 157 + 1448899 gggtccgtgggtgagaggtcccagtggagctgaggcactgttggaat-gggagaaccagagca--cacaagctagaggcatagaagagcctggctggaagataaatac-tt-cagtagagatttggggaatagtccagttat------tatcaagatcaacatt-agac i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8191233 156 - 15139346 gtgtccatggatgagaggtcccaatggagctgaggcactgttggaat-gggagaaccggagca--gataagctggaagc-tggaagagcctggctgggaggtgaatgc-tt-cggtagggatctggggagtagtccagttat------tgtaaagaTCAACATT-agac i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9392989 156 - 11631747 gtgtccgtggaggagaggtcccaatggagctgaggcactgttggaat-gggagaaccggagca--cataagctggaagc-tggaagagcctggttgggaggcgaatgc-tt-cagtagagatctggggagtagtccagttat------tgtaaagaTCAACATT-agac i aotNan1.NW_018493494v1 I 8 C 0 s canFam3.chr13 48012659 160 + 63241923 aattcaatgaattaaagagccagatgaatctgaaggattgctggactggggaggactaga------acaggctggaagcatgggagatgctggtcacaagacggatac-ttgaagtcaagatt--gtatatagtccagtaatgggcaccaggaacgtcaaagttaagac i canFam3.chr13 C 0 I 2 s dasNov3.JH568349 4103557 158 - 5279953 gggtcaatggatcagaagtgcagatgagtttggagaactgttggaat-gggcagactagagtaggcaaaaactgaaagaatacaa-atactgattgagagaggaatgcatg-aagtcaggattttggaggctgtctagttggtga---tggaaacgtcaa-----agac i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1878830 2055 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76425370 9 + 151834684 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8625561 161 + 8790067 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=21931.000000 s hg38.chr4_KI270787v1_alt 75095 4 + 111943 catg s panTro5.chr4 119639769 4 - 194502333 catg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121053183 4 - 195804263 catg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4484422 4 - 17550833 catg i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111566934 4 - 190429646 catg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110736123 4 - 189454096 catg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13302617 4 + 26754465 catg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4204176 4 - 5137665 catg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122913797 4 - 135778131 catg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2025860 4 + 2427316 catg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1321120 4 + 1448899 catg i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9393145 4 - 11631747 catg i aotNan1.NW_018493494v1 C 0 I 2 s canFam3.chr13 48012821 2 + 63241923 ca-- i canFam3.chr13 I 2 C 0 s dasNov3.JH568349 4103715 4 - 5279953 tctg i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1878830 2055 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76425370 9 + 151834684 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8625561 161 + 8790067 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=53392.000000 s hg38.chr4_KI270787v1_alt 75099 8 + 111943 ggaatggt s panTro5.chr4 119639773 8 - 194502333 ggaatggt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121053187 8 - 195804263 ggaatggt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4484426 8 - 17550833 ggaatggt i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111566938 8 - 190429646 ggagtggt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110736127 8 - 189454096 ggagtggt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13302621 8 + 26754465 ggagtggt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4204180 8 - 5137665 ggagtagt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122913801 8 - 135778131 ggagtggt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2025864 8 + 2427316 ggagtggt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1321124 8 + 1448899 ggagtggt i colAng1.NW_012119221v1 C 0 C 0 s canFam3.chr13 48012823 8 + 63241923 ggagtggt i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4103719 8 - 5279953 ggaatggt i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1878830 2055 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76425370 9 + 151834684 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8625561 161 + 8790067 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=883180.000000 s hg38.chr4_KI270787v1_alt 75107 146 + 111943 gggtgaggtagggagaaccaatccaggatcagagagacttgggtgct-gggtgcaaatcaccaagaatgaagacagagagtagtgacaggaagacagtgaagcagt-ctgtggtcagcagtgaatgaggaggaaccaggaggttgtag s panTro5.chr4 119639781 146 - 194502333 gggtgaggtagggagaaccaatccaggatcagagagacttgggtgct-gggtgcaaatcaccaagaatgaagacagagagtagtgacaggaagacagtgaagcagt-ctgtggtcagcagcgaatgaggaggaaccaggaggttgtag i panTro5.chr4 C 0 C 0 s panPan2.chr4 121053195 146 - 195804263 gggtgaggtagggagaaccaatccaggatcagagagacttgggtgct-gggtgcaaatcaccaagaatgaagacagagagtagtgacaggaagacagtgaagcagt-ctgtggtcagcagcgaatgaggaggaaccaggaggttgtag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4484434 146 - 17550833 gggtgaggtagggagaaccaatccaggatgagagagacttgggtgct-gggtgcaaatcaccaagaatgaagacagagagtagtgacaggaagacagtgaagcagt-ctgtggtcagcagcgaatgaggaggaaccaggaggttgtag i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111566946 146 - 190429646 gggtgaggtggagagaagcaatccaggatcagagagagttgggtgct-gggtgcacatcaccaagaatgaagacagagagtaacgacaggaagacagtgaggcagt-ctgtggtcagcagcgaatgaggaggaaccaggaggttgtag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110736135 146 - 189454096 gggtgaggtggagagaagcaatccaggatcagagagagttgggtgct-gggtgcacatcaccaagaatgaagacagagagtaacgacaggaagacagtgaggcagt-ctgtggtcagcagcgaatgaggaggaaccaggaggttgtag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13302629 146 + 26754465 gggtgaggtagagagaagcaatccaggatcagagagagttgggtgct-gggtgcacatcaccaagaatgaagacagagagtaacgacaggaagacagtgaggcagt-ctgtggtcagcagcgaatgaggaggaaccaggaggttgtag i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4204188 146 - 5137665 gggtgaggtggagagaagcaatccaggataagagagagttgggtgct-gggtgcaaatcaccaagaatgaagacagagagtaacgacaggaagacggtgaggcagt-ctgtggtcagcagcgaataaggaggaaccaggaggttgtag i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122913809 146 - 135778131 gggtgaggtggagagaagcaatccaggatcagagagagttgggtgct-gggtgcaaatcaccaagaatgaagacagagagtagtgacaggaagacagtgaggcagt-ctgtggtcagcagcatgtgaggaggaaccaggaggttgtag i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2025872 146 + 2427316 gggtgaggtggagagaagcaatccaggataagagacagttgggtgct-gggtgcaaatcaccaagaatgaagacagagagtaacgacaggaagacggtgaggcagt-ccgtggtcagcagcgaataaggaggaaccaggaggttgtag i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1321132 146 + 1448899 gggtgaagtggagagaaccaatccaggatcagagagacttgggtgct-gggtacaaatcaccaagaatgaagacagagagtagcgacaggaagacagtgaggcagt-ctgtggtcagcaacgaatgaggaggaaccaggaggttgtag i colAng1.NW_012119221v1 C 0 C 0 s proCoq1.NW_012140747v1 1880885 143 + 4188776 gggtgaggcagggagaaccaatccaggaccaaagaggctcagctgca-gggtgcaaatcacc---aacgaagatggggagtagaaacaggaagacggtgaagcagt-ctgcggtcagcagtgaataaggaggaaccagggggccgcag i proCoq1.NW_012140747v1 I 2055 I 25 s canFam3.chr13 48012831 123 + 63241923 ggctgaggtaggaagaa-taatccaagatcaaataagtcaaagtgctagagtcaaaaccttcagaaaagatgccaagggcttgagacagaaagacagtgag-----------------------tgaggagggtcta-caggctgtag i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4103727 125 - 5279953 ggccaaagtggagagcacagatccaagacataagaggccaagacact-ggatgcaaattttcaagaatgctg--aaggaagagtgattggaagagagtgaagcagtgctgtggc--------------------ccagggggcctcag i dasNov3.JH568349 C 0 I 1 e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76425370 9 + 151834684 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8625561 161 + 8790067 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=159801.000000 s hg38.chr4_KI270787v1_alt 75253 29 + 111943 taactggaagggggaaagggggaggggtg s panTro5.chr4 119639927 29 - 194502333 taactggaagggggaaagggggaggggtg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121053341 29 - 195804263 taactggaagggggaaagggggaggggtg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4484580 29 - 17550833 taactggaagggggaaagggggaggggtg i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111567092 29 - 190429646 taactggaacagggaaaggagaaggggtg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110736281 29 - 189454096 taactggaacagggaaaggagaaggggtg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13302775 29 + 26754465 taactggaacagggaaaggagaaggggtg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4204334 29 - 5137665 taactggaacagggaaaggggaaggggtg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122913955 29 - 135778131 taactggaacagggaaaggggaaggggtg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2026018 29 + 2427316 taactggaacagggaaaggggaaggggtg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1321278 29 + 1448899 taactggaacagggaaaggggaaggggtg i colAng1.NW_012119221v1 C 0 C 0 s canFam3.chr13 48012954 21 + 63241923 --------atacagcaaaagagagaggtg i canFam3.chr13 C 0 I 1 s dasNov3.JH568349 4103853 29 - 5279953 taacagcaacaaggagaggtggaggggtg i dasNov3.JH568349 I 1 C 0 e proCoq1.NW_012140747v1 1881028 25 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76425370 9 + 151834684 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8625561 161 + 8790067 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=954425.000000 s hg38.chr4_KI270787v1_alt 75282 148 + 111943 ggaaagtcagaggccatgagattcaaaggagctgggtgtctaaaggaagaaagaggagataaggttgggaagcagcagtagggtgctaggaggacactcacccc-atccccaggg-c-tgcagtacttgtagtgtga-----gaaatcgcaataat--------------------------- s panTro5.chr4 119639956 148 - 194502333 ggaaagtcagaggccatgagattcaaaggagctgggtgtctaaacgaagaaagaggagataaggttgggaagcagcagtagggtgctaggaggacactcacccc-acccccaggg-c-tgcagtacttgtagtgtga-----gaaatcgcaataat--------------------------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121053370 148 - 195804263 ggaaagtcagaggccatgagattcaaaggagctgggtgtctaaacgaagaaagaggagataaggttgggaagcagcagtagggtgctaggaggacactcacccc-acccccaggg-c-tgcagtacttgtagtgtga-----gaaatcgcaataat--------------------------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4484609 148 - 17550833 ggaaagtcagaggccatgagattcaaaggagctgggtgtctaaaggaagaaagaggagataaggttgggaagcagcagtagggtgctaggaggacactcacccc-acccacaggg-c-tgcagtacttgtagtgtga-----gaaatcgcaataat--------------------------- i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111567121 148 - 190429646 ggaaagtcagaggccatgagattcaaaggagctggatgtctaaaggaagaaagaggagataaggttgggaagcagcagtagggtgctaggaggacacttacccc-acccccaggg-c-tgcagcacttgtagtgtga-----gaaataacaacaac--------------------------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110736310 148 - 189454096 ggaaagtcagaggccatgagattcaaaggagctggatgtctaaaggaagaaagaggagataaggttgggaagcagcagtagggtgctaggaggacacttacccc-acccccaggg-c-tgcagcacttgtagtgtga-----gaaataacaacaac--------------------------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13302804 148 + 26754465 ggaaagtcagaggccatgagattcaaaggagctggatgtctaaaggaagaaagaggagataaggttgggaagcagcagtagggtgctaggaggacacttacccc-acccccaggg-c-tgcagcacttgtagtgtga-----gaaataacaacaac--------------------------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4204363 148 - 5137665 ggaaagtcacaggccatgagattcaaaggagctgggtgtctaaaggaagaaagaggagataaggttgggaagcagcagtagggtgctaggaggacacttacccc-acccccaggg-c-tgcagtacttgtagtgtga-----gaaataacaacaat--------------------------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122913984 147 - 135778131 ggaaa-tcacaggccatgagattcaaaggagctgggtgtctaaaggaacaaagaggagataaggttgggaagcagcagtagggtgctaggaggacacttacccc-acccccaggg-c-tgcagtacttgtagtgtga-----gaaataacaacaac--------------------------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2026047 148 + 2427316 ggaaagtcacaggccatgagattcaaaggagctgggtgtctaaaggaagaaagaggagataaggttgagaagcagcagtagggtgctaggaggacacttacccc-acccccaggg-c-tgcagtacttgtagtgtga-----gaaataacaacaat--------------------------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1321307 148 + 1448899 ggaaagtcagaggccatgagattcaaagaagctgggtgtctaaaggaagaaagaggagataaggttgggaagcagcagtagggtgctaggaggacacttacccc-acccccaggg-c-tgcagtacttgtagtgtga-----gaaataacaataac--------------------------- i colAng1.NW_012119221v1 C 0 C 0 s proCoq1.NW_012140747v1 1881053 146 + 4188776 ggaaagccaggagtcatgagcttaaaaggagctgagtttttaaaggaagaaagaagagacaaggtcgtgaagcagtagcagggtgctagaaggacacgcacccc-acctccgggg-c-tgtggtacttgtactgtga-----gaaataacaata----------------------------- i proCoq1.NW_012140747v1 I 25 C 0 s canFam3.chr13 48012976 133 + 63241923 taaaaatgtgaaggcataaaatccaaaggagctcaatatct----gaagaaggaatagatatg-------------aattgggtgctagaaggacactcaccccaatatccagggcc-tgtagtacttgcactatga-----ataataatgatgat--------------------------- i canFam3.chr13 I 1 I 21 s dasNov3.JH568349 4103882 177 - 5279953 gcaaagtctgaagacatggaattcttaggagctgggtgctcaaagagagaaagaaaaaatatggtatgaaagcagcagtggcgtgctaggatgac----acccc-acctccaggg-cttgtgatacctgcactgtgaaaattaaaataataataattaataattataacagaatatccataac i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e mm10.chr5 76425370 9 + 151834684 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8625561 161 + 8790067 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=327372.000000 s hg38.chr4_KI270787v1_alt 75430 50 + 111943 a---------aactgcatccatgggagagggctgtggaggagatggtgtctgtaggaag s panTro5.chr4 119640104 50 - 194502333 a---------aactgcatccacgggagagggctgtggaggagatggtgtctgtaggaag i panTro5.chr4 C 0 C 0 s panPan2.chr4 121053518 50 - 195804263 a---------aactgcatccacgggagagggctgtggaggagatggtgtctgtaggaag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4484757 50 - 17550833 a---------aactgcatccccgggagagggctgtggaggagatggtgtctgtaggaag i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111567269 59 - 190429646 aataataatcaactgcatccatgggagagggctgtggaggagatggtgtctgtaggaag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110736458 59 - 189454096 aataataatcaactgcatccatgggagagggctgtggaggagatggtgtctgtaggaag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13302952 59 + 26754465 aataataatcaactgcatccatgggagagggctgtggaggagatggtgtctgtaggaag i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4204511 59 - 5137665 aataataatcaactgcatccatgggagagggctgtggaggagatggtgtctgtaggaag i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122914131 57 - 135778131 aataataatcaactgcatccatgggagagggctgtggaggagatggtgtctgtagga-- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2026195 59 + 2427316 aataataatcaactgcatccatgggagagggctgtggaggagatggtgtctgtaggaag i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1321455 59 + 1448899 aataataatcaactgcatccatgggagagggctgtggaggagacggtgtctgtaggaag i colAng1.NW_012119221v1 C 0 C 0 s proCoq1.NW_012140747v1 1881199 49 + 4188776 ----------aactgcctcccctggggagggatgcagaggaggtggtgtccacaggaag i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76425379 48 + 151834684 ---------AAACAGC-TCCAATGGAGATGACTGTAGGGACAGGCACAACTGTAGAAG- i mm10.chr5 I 9 C 0 s canFam3.chr13 48013130 50 + 63241923 ---------aagctgcttccactggaaaggactgcaagggaggtgatgtccacagcaag i canFam3.chr13 I 21 C 0 s dasNov3.JH568349 4104059 50 - 5279953 ---------aaaccacccccattgggaagggctgcaggaaaggtggtatcctcagggag i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8625561 161 + 8790067 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=2367213.000000 s hg38.chr4_KI270787v1_alt 75480 355 + 111943 caccccagtttcaattaggtcc---aggtgggaaagatgttcagcacagcagttgaggagacttgaggatgca--ggagagtttgctgtgaccgac--c-ttaagttccaaagggc---atgtggaagaaggt-agaggttggggaggaaca-g-aa-actgggtcagatgagcagaagcacagaatgataacagagggtatgaacaatatggaagc--------------------ccttccagtggactgTGAGGCGTGATGGGATTCATTCTCATAAGCCCCT-----------GG---------TGTCTAGTCCAAGCTGAACAGTATGGGGCCACTGGGCAACAGTCCTCCCCTGCTGACCTCAGAG---TGTGGTGCCCTAAGTAGGAACTCTGGGTGTGAGGGCCT s panTro5.chr4 119640154 355 - 194502333 caccccagtttcaattaggtcc---aggtgggaaagatgttcagcacagcagttgaggagacttgaggatgca--ggagagtttgctgtgaccgac--c-ttaagttccaaagggc---atgtggaagaaggt-agaggttggggaggaaca-g-aa-actgggtcagatgagcagaagcacagaatggtaacagagggtatgaacaatatggaagc--------------------ccttccagtggactgtgaggcatgatgggattcattctcatAAGCCCCT-----------GG---------TGTCCAGTCCAAGCTGAACAGTATGGGGCCACTGGGCAACAGTCCTCCCCTGCTGACCTCAGAG---TGTGGTGCCCTAAGTAGGAACCCTGGGTGTGAGGGCCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121053568 355 - 195804263 caccccagtttcaattaggtcc---aggtgggaaagatgttcagcacagcagttgaggagacttgaggatgca--ggagagtttgctgtgaccgac--c-ttaagttccaaagggc---atgtggaagaaggt-agaggttggggaggaaca-g-aa-actgggtcagatgagcagaagcacagaatggtaacagagggtatgaacaatatggaagc--------------------ccttccagtggactgTGAGGCGTGATGGGATTCATTCTCATAAGCCCCT-----------GG---------TGTCCAGTCCAAGCTGAACAGTATGGGGCCACTGGGCAACAGTCCTCCCCTGCTGACCTCAGAG---TGTGGTGCCCTAAGTAGGAACCCTGGGTGTGAGGGCCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4484807 354 - 17550833 caccccagtttcaattaggtcc---aggtggtaaagatgttcagcacagcagttgaagagacttgaggatgca--ggagagtttgctgtgaccaac--c-ttaagttccaaagggc---atgtggaagaaggt-agaggttggggaggaaca-g-aa-actgggtcagatgagcagaagcacagaatggtaacagagggtatgaacaatatggaagc--------------------ccttccagtggactgtgaggcatgatggga-tcattcTCATAAGCCCCT-----------GG---------TGTCCAGTCCAAGCTGAACAGTATGGGGCCACTGGGCAACAGTCCTCCCCTGCTGACCTCAGAG---TGTGGTGTCCTAAGTAGGAACCCTGGGTGTGAGGGCCT i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111567328 355 - 190429646 caccccagtttcaattaggtcc---aggtggtaagggtgttcggcacagcagttgaggagacttgaggatgca--ggacagtttgctgtgactcat--c-ctaagttccaaagggc---atgtggaagaaggt-agaggttggggaggaaca-g-aa-accaggtcagataagcagaagcacataacggtaACAGAGGGTATGAACAATATGGAAAC--------------------CCTTTCAGTGGACTGTGAGGCATGATGGGATTCATTCTCATAAGCCCCT-----------GG---------TATCCAGTCCAAGCTGAACAGTATGGTGCCACTGGGCAACGGTCCTCCCCTGCTGACCTCAGAG---TGTGGTGCTCTAAGTAGGAACCCTGGGTGTGAGGGCCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110736517 355 - 189454096 caccccagtttcaattaggtcc---aggtggtaagggtgttcggcacagcagttgaggagacttgaggatgca--ggacagtttgctgtgactcat--c-ctaagttccaaagggc---atgtggaagaaggt-agaggttggggaggaaca-g-aa-accaggtcagataagcagaagcacataacggtaACAGAGGGTATGAACAATATGGAAAC--------------------CCTTTCAGTGGACTGTGAGGCATGATGGGATTCATTCTCATAAGCCCCT-----------GG---------TATCCAGTCCAAGCTGAACAGTATGGTGCCACTGGGCAACGGTCCTCCCCTGCTGACCTCAGAG---TGTGGTGCCCTAAGTAGGAACCCTGGGTGTGAGGGCCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13303011 355 + 26754465 caccccagtttcaattaggtcc---aggtggtaagggtgttcggcacagcagttgaggagacttgaggatgca--ggacagtttgctgtgactcat--c-ctaagttccaaagggc---atgtggaagaaggt-agaggttggggaggaaca-g-aa-accgggtcagataagcagaagcacataacggtaACAGAGGGTATGAACAATATGGAAAC--------------------CCTTTCAGTGGACTGTGAGGCATGATGGGATTCATTCTCATAAGCCCCT-----------GG---------TATCCAGTCCAAGCTGAACAGTATGGTGCCACTGGGCAACGGTCCTCCCCTGCTGACCTCAGAG---TGTGGTGCCCTAAGTAGGAACCCTGGGTGTGAGGGCCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4204570 355 - 5137665 caccccagtttcaattaggtcc---aggtggtaagggtgtttggcacagcagttgaggagacttgaggatgca--ggacagtttgctgtgactgat--c-ctaagttccaaagggc---atgtggaagaaggt-agaggttggggaggaaca-g-aa-actgggtcagataagcagaagcacataacggtaACAGAGGGTATGAACAATATGGAAAC--------------------CCTTTCAGTGGACTGTGAGGCATGATGGGATTCATTCTCATAAGCCCCT-----------GG---------TGTCCAGTCCAAGCTGAACAGTATGGTGCCACTGGGCAACGGTCCTCCCCTGCTGACCTCAGAG---TGTGGTGCCCTAAGTAGGAACCCTGGGTGTGAGGGCCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122914188 352 - 135778131 ------agtttcagttaggtcc---aggtggtaagggtgttcggcacagcagttggggagacttgaggatgca--ggacagtttgctgtgactcat--c-ctaagttccaaagggc---atgtggaagaaggt-agaggttggggaggaaca-g-aa-actgggtcagatgagcagaagcacaTAATGGTAACAGAGGGTATGAACAATATGGAAAC--------------------CCTTTCAGTGGACTGTGAGGCATGATGGGATTCATTCTCATAAGCCGCT-----------GG---------TGTCCAGTCCAAGCGGAACAGTATGGTGCCACTGGGCAACGGTCCTCCCCTGCTGACCTCAGAGTCCTGTGGTGCCCTAAGTAGGAACCCTGGGTGTGAGGGCCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2026254 355 + 2427316 caccccagtttcaattaggtcc---aggtggtaagggtgtttggcacagcagttgaggagacttgaggatgca--ggacagtttgctgtgactgat--c-ctaagttccaaagggc---atatggaagaaggt-agaggttggggaggaaca-g-aa-accaggtcagataagcagaagcacataacggtaACAGAGGGTATGAACAATATGGAAAC--------------------CCTTTCAGTGGACTGTGAGGCATGATGGGATTCATTCTCATAAGCCCCT-----------GG---------TGTCCAGTCCAAGCTGAACAGTATGGTGCCACTGGGCAACGGTCCTCCCCTGCTGACCTCAGAG---TGTGGTGCCCTAAGTAGGAACCCTGGGTGTGAGGGCCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1321514 355 + 1448899 caccccagtttcaattaggtcc---aggtggtaagggtgttcggcacagcagttgaggagacttgaggatgca--ggacagtttgctgtgactgac--c-ctaagttccaaagggc---atgtggaagaaggt-agaggttggggaggaaca-g-aa-actgggtcagatgagcagaagcacaTAATGGTAACAGAGGGTATGAACAATATAGAAGC--------------------CCTTTCAGTGGACTGTGAGGCATGATGGGATTCATTCTTATAAGCCCTT-----------GG---------TGTGCAGTCCAAGCTGAACAGTATGGTGCCACTGGGCAACGGTCCTCCCCTGCTGACCTCAGAG---TGTGGTGCCCTAAGTAGGAACCCTGGGTGTGAGGGCCT i colAng1.NW_012119221v1 C 0 C 0 s proCoq1.NW_012140747v1 1881248 380 + 4188776 cacccaggtttcaattaggtccagcaggtggcgagggcgttcagaacagcaattgaggagaggtgggaataga--gaagagtttgctgtgacagactga-gaaagttccaaagggc---gcatggaagagttt-agaggttggggtggagca-g-gaaatcgggtcagattagtggaagtagaggatggtagtggagggtacagagaatatgggagtcctgg-------gggtgtggccttctggtgga-tgtgtggcctgatgggattagttctgataagcccta-----------gggagGACAGATGTCCAGCTCAAGCCGAACAGCATGG-GCCCCTGGG-AACAGACCTCTCCTGCTAACCTCAGAG---TGTGGTGCCCTAAGTAGGAAGTCCGGGTGTGAGGGCCT i proCoq1.NW_012140747v1 C 0 I 175 s otoGar3.GL873602 8625722 347 + 8790067 CACCCCGGGTTCAGTCAGG-CCTGAGGGTGGCAAGGGCATCGCGAGCAGCAGT----------TCGGCACAGA--AGGGAGTGGGCTGTGACCCAC-AA-GAAAGTTCCAAAGTGC---CCCTGGAAGAGCTT-AGGGGTTGG---------------ATGGAATCAGATGTGT-GAAGTGAAGCAAGG-AGTGGGGGATGCAGAGGACGAGGAAGCCCTGG-------GGGTGTGGCCTTCTGGCGGA-TGTGAGGCCTGAGGGGATTAATCCTGATAAGCCTTT-----------GGGAGGGCAGGTGTACAGTTCAAGTTG--CCGTCTGG-GGAACTGGT---CAGACCTCTCCTGCCAACCTCAGAG----GTGGTG-CGTAGGTGGGCAGCCTGGGAGCCAGGGCCC i otoGar3.GL873602 I 161 C 0 s mm10.chr5 76425427 391 + 151834684 CACCCAGGCTTCAGGGAGACCCAGCAAAAGGCAAGGACCATCAG---AGCAGTGACTGTGACTATGAGAAGCATGTGAGAGTGTGCTATGACAGGC--CATTAAGTTCCAAAGTGCAAGATGGGTGGGAGCTT-AGGAAATTAAGAGGGCTATG-AA-ACTGGGTTAGATGTGAGGAAATACAGAAGG--ACCCAGAGACGCAAACAATATGGAAGGTCTAGGGTGGGTGGGCATGGCCTGCAGGTGGGCTGTGAAGAACAATGTCGTTAATTCTGAGAAGTCTTTGCAAGAGGGTGGG---------TGCCCAGGTCAAGCTGAACAGCATGAGGCCACTGGATATTAATTCTCTCATGCGGACCTCAGAA---CATGGCACAGTACATCAAAAGACAGAGTATGACTGCCT i mm10.chr5 C 0 C 0 s canFam3.chr13 48013180 345 + 63241923 agcccaggttacagtcaggttaagcaagtgattaagacattcccagctgtagctggggat-----------ct--aaagggtttgctgtgatagcc--c-caaaattccaaatgtc---ctggagaagagcttgggaggttgaggagagcaa-g-aa-attgggtcagatgagtggagg----gtacagtagcagagggtacaggcaatgtggaagc-------ctggggattgtggccttctgggggtatgtgaggcatgatgaaattagtcctaatAAGCC--T-----------AG---------TGTCCACATCAGGCCAAACAGCATGAGATTAT--AGCATCGGTCCT----TGCTGACCGT-------GGTGGTGGCCCACGATGGAAGCCCCACCATCGTGGCTT i canFam3.chr13 C 0 I 11 s dasNov3.JH568349 4104109 353 - 5279953 cacccagatgtcaa------gc---aaggggcaagggtgttcagagcagtggttgaggagaagtggggg-gca--g------------------ac--c-ataggttccaaaggac---atgaggtagaatttgggaggttggggaaaagca-gcaa-attgggccagattagcagaagcagagagtggtagatgagggtagaggcaatgtggaagc---------ctggggggaaggcctctgctgggatgtgagatatgatgggattagttcaggtagctcttg-----------gggaggatgaatgtccagctcaagttgaacagcctgaagtcgctgggcaaaagtcccctcctgttgacctcagagg--tgtggaggcctAACTAGGAAGCCTGAGTGTGATGGCCT i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=524710.000000 s hg38.chr4_KI270787v1_alt 75835 92 + 111943 TTTTTAGTTGTCTGTAGTTCAAAGAGGCCTGCAATGAAGGCACAACAGcaggg---aggaagaattagaaaattaattagtcacagttctgtttc s panTro5.chr4 119640509 88 - 194502333 TTTTTAGTTGTCTGTAGTTCAAAGAGGCCTGCAATGAAGGCACAACAGCAGGG---AGGAAGAACTAGAAAATTA----GTCACAGTTCTGTTTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121053923 92 - 195804263 TTTTTAGTTGTCTGTAGTTCAAAGAGGCCTGCAATGAAGGCACAACAGcaggg---aggaagaattagaaaattaattagtcacagttctgtttc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4485161 91 - 17550833 CTTTTAGTTGTCTGTAGTTCAGAGAGG-CTGCAATGAAGGCACAACAGCGGCG---AGGAAGAattagaaaattaattagtcacagttctgtttc i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111567683 92 - 190429646 CTTTTAGTTGTCTATAGTTCAAAGGGGCTGGCAATGCAGGCACAACAGcaggg---aggaagaattagaaaatcaattagtcacagttctgtttc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110736872 92 - 189454096 CTTTTAGTTGTCTATAGTTCAAAGGGGCTGGCAATGCAGGCACAACAGcaggg---aggaagaattagaaaattaattagtcacagttctgtttc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13303366 92 + 26754465 CTTATAGTTGTCTATAGTTCAAAGGGGCTGGCAATGCAGGCACAACAGCAAGG---AGGAAGAattagaaaattaattagtcacagttctgtttc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4204925 92 - 5137665 CTTTTAGTTGTCTATAGTTCCAAGGGGCTGGCAATGCAGGCACAACAGcaggg---aggaagaattagaaaattaattagtcacagttctgtttc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122914540 92 - 135778131 CTTTTAGTTGTCTATAGTTCAAAGGGGCTGGCAATGCAGGCACAACAGcaggg---aggaagaattagaaaattaattagtcacagttctgtttc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2026609 92 + 2427316 CTTTTAGTTGTCTATAGTTCCAAGGGGCTGGCAATGCAGGCACAACAGcaggg---aggaagaattagaaaattaattagtcacagttctgtttc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1321869 92 + 1448899 CTTTTAGTTGTCTATAGTTCAAAGGGGCTGGCAATGCAGGCACAACAGCAGGG---AGGAAGAATTAGAAAATTAATTAGTCACAGTTCTGTTTC i colAng1.NW_012119221v1 C 0 I 323 s otoGar3.GL873602 8626069 71 + 8790067 TCTTCATCTGTCTG------GAAGGGGTTGGCAATGCA-GCACAAGAA----G---AGGAAGAATTAGAAAATTAATTCATCACA---------- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76425818 85 + 151834684 CCTCTATCTGCCCTTAG----GAAGAACCAGCAGTGAAGGCACCACAG---GG---AGAAAGGACTGGAAAGGTCATTTACCCCAGCTCTGCTCC i mm10.chr5 C 0 C 0 s canFam3.chr13 48013536 95 + 63241923 TTTTCATCTGTCCAGACATATGATGACCTAGCAAGATAGGCACAATAGATGGGGAAAAAAATAATTACAATTTTAATTCATCATAGTTCTGCTTC i canFam3.chr13 I 11 C 0 s dasNov3.JH568349 4104462 65 - 5279953 CTTTCATCTGTCAGT---------------------------CTAGAACAGGA---AAAAAGAATTAGAAAACAAATCCATCAGAGATCTGTTTA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1881628 175 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=734311.000000 s hg38.chr4_KI270787v1_alt 75927 113 + 111943 tactgtgcaacaaagaataatcatttaccagcttaagtaggacagtgattaaaggtgttagttattggaaagta-ttgaattggtctggttcttgctatgaatt----------------ccaagtatgA s panTro5.chr4 119640597 113 - 194502333 TACTGTGCAACAAAGAATAATCATTTACCAGCTTAAGTAGAACAGTGATTAAAGGTGTTAGTTATTGGAAAGTA-TTGAATTGGTGTGGTTCTTGCTATGAATT----------------CCAAGTATGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121054015 113 - 195804263 tactgtgcaacaaagaataatcatttaccagcttaagtagaacagtgattaaaggtgttagttattggaaagta-ttgaattggtctggttcttgctatgaatt----------------ccaagtatgA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4485252 113 - 17550833 tactgtgcaacagagaataatcatttaccagcttaagtaggacagtgattaaaggtgttagttattggaaagta-ttgaattggtctggttcttgctatgaatt----------------ccaagtatgA i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111567775 113 - 190429646 tactgtacagcaaagactaatcatttaccagcttaagtaggacagtgattaaaggcagtagttattagaaagta-ttgaattggtctggttcttgctatgaatt----------------ccaagtatgA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110736964 113 - 189454096 tactgtacagcaaagactaatcatttaccagcttaagtaggactgtgattaaaggcagtagttattagaaagta-ttgaattggtctggttcttgctatgaatt----------------ccaagtatgA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13303458 113 + 26754465 tactgtacagcaaagactaatcatttaccagcttaagtaggacagtgattaaaggcagtagttattagaaagta-ttgaattggtctggttcttgctatgaatt----------------tcaagtatgA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4205017 113 - 5137665 tactgtacagcaaagactaatcatttaccagcttaagtaggacagtgattaaaggcagtagttattagaaagta-ttgaattggtctggttcttgctatgaatt----------------ccaagtatgA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122914632 113 - 135778131 tactgtacagcaaagactaatcatttaccagcttaagtaggacagtgattaaaggcagtagttattagaaagta-ttgaattggtctggttcttgctatgaatt----------------ccaagtatgA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2026701 113 + 2427316 tactgtacagcaaagactaatcatttaccagcctaagtaggacagtgattaaaggcagtagttattagaaagta-ttgaattggtctggttcttgctatgaatt----------------ccaagtatgA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1322284 113 + 1448899 TACTGTACAGCAAAGACTAATCATTTACCAGCTTAAGTAGGACAGTGATTAAAGACATTAGTTATTAGAAAGTA-TTGAATTGGTCTGGTTCTTGCTGTGAATT----------------CCAAGTATGA i colAng1.NW_012119221v1 I 323 C 0 s otoGar3.GL873602 8626140 94 + 8790067 -----------------------------------AGTAGGCTAATGATTAACCGTGTTAATTATTAGAAAGAT-TGGGATTGGTCTGGCTCTTGCTGTGAATTATAAAATTACAAAATGCCAAGCAGGC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76425903 130 + 151834684 AACTGTAACCCAAAGGATTAGCACTGACTGCCTCAAGTAGGACAGACATTCAGGGTGTTAGCTATTAGCAAGGATTTGCATCCCTATTGTTCTTGGTGTGAATTAGAAAGTTGCAAAATTCCAGGCATAC i mm10.chr5 C 0 C 0 s canFam3.chr13 48013631 129 + 63241923 TATTGTGTAACAGAGAATAATCATTTACGTGCTTAAATAGGACAGTGATTTAAATTATTAGTTAATAGAAAGTA-TTAAATCAGCCTCTTTCTTGCTATGAATTGTAAAATTGCAAAATCCCAAGCAAGC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4104527 119 - 5279953 TATTGTACAACAAA--ATAATCATTTACCTGTTC-AGTAGCACAGCGATCGAAGGTGTTAGTTATTAGACTGTA-TT-------TCTGATTCTTGCTGTGAATTGTAAAATTGCAAAATTCCAAACATGC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1881628 175 + 4188776 I e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=1329943.000000 s hg38.chr4_KI270787v1_alt 76040 161 + 111943 TTTGAAAATGAACTTACGCCCTCAACTACACTCAAACACTAGTCACTTGAATTAATTCAGAATTAAAACACACAAATGATTTAC----TTGGATGGAATAAGCATAAGCTAG---CTTCTTAAGGGTTCTTTCCTGCTGTGAACATTGACTAGAGTCCTTAGAACAGA s panTro5.chr4 119640710 161 - 194502333 TTTGAAAATGAACTTACGCCCTCAACTACACTCAAACACTAGTCACTTGAATTAATTCAGAATTAAAACACACAAATGATTTAC----TTGGATGGAATAAGCATAAGCTAG---CTTCTTAAGGGTTCTTTCCTGCTGTGAACATTGACTAGAGTCCTTAGAACAGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121054128 161 - 195804263 TTTGAAAATGAACTTACGCCCTCAACTACACTCAAACACTAGTCACTTGAATTAATTCAGAATTAAAACACACAAATGATTTAC----TTGGATGGAATAAGCATAAGCTAG---CTTCTTAAGGGTTCTTTCCTGCTGTGAACATTGACTAGAGTCCTTAGAACAGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4485365 161 - 17550833 TTTGAAAATGAACTTACACCCTCAACTACACTCAAACACTAGTCACTTGAATTAATTCAGAATTAAAACACACAAATGATTTAC----TTGGATGGAATAAGCATAAGCTAG---CTTCTTAAGGGTTCTTTCCTGCTGTGAACATTGACTAGAGTCCTTAGAACAGA i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111567888 161 - 190429646 TTTGAAAATGAACTTATGCCCTCAACTACCCTCAAACGCTAGTCACTTGAATTAATTCAGAATTAAAACACACAAATGATTTAC----TTGGATAGAATAAGCAGAAGCAAG---CTTCTTAAGGGTTCTTTCTTGCTGCAAACATTGATTAGAGTCCTCAGAACAGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110737077 161 - 189454096 TTTGAAAATGAACTTATGCCCTCAACTACCCTCAAACGCTAGTCACTTGAATTAATTCAGAATTAAAACACACAAATGATTTAC----TTGGATAGAATAAGCAGAAGCAAG---CTTCTTAAGGGTTCTTTCTTGCTGCAAACATTGATTAGAGTCCTCAGAACAGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13303571 161 + 26754465 TTTGAAAATGAACTTATGCCCTCAACTACCCTCAAACGCTAGTCACTTGAATTAATTCAGAATTAAAACACACAAATGATTTAC----TTGGATAGAATAAGCAGAAGCAAG---CTTCTTAAGGGTTCTTTCTTGCTGCAAACATTGATTAGAGTCCTCAGAACAGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4205130 161 - 5137665 TTTGAAAATGAACTTATGCCCTCAACTACACTCAAACGCTAGTCACTTGAATTAATTCAGAATTAAAACACACAAATGATTTAC----TTGGATAGAATAAGCAGAAGCAAG---CTTCTTAAGGGTTCTTTCTTGCTGCAAACATTGATTAGAGTCCTCAGAACAGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122914745 161 - 135778131 TTTGAAAATGAACTTATGCCCTCAACTACACTCAAACGCTAGTCACTTGAATTAATTCAGAATTAAAACACACAGATGATTTAC----TTGGATAGAATAAGCAGAAGCAAG---CTTCTTAAGGGTTCTTTCTTGCTGCAAACATTGATTAGAGTCCTCAGAACAGT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2026814 161 + 2427316 TTTGAAAATGAACTTATGCCCTCAACTACACTCAAACGCTAGTCACTTGAATTAATTCAGAATTAAAACACACAAATGATTTAC----TTGGATAGAATAAGCAGAAGCAAG---CTTCTTAAGGGTTCTTTCTTGCTGCAAACATTGATTAGAGTCCTCAGAACAGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1322397 161 + 1448899 TTTGAAAATGAACTTATGCCCTCAACTACACTCAAACGCTAGTCACTTGAATTAATTCAGAATTAAAACACACAAATGATTTAC----TTGGATAGAATAAGCAGAAGCAAG---CTTCTTAAGGGTTCTTTCCTGCTGCAAACATTGATTAGAGTCCTCAGAACAGT i colAng1.NW_012119221v1 C 0 C 0 s proCoq1.NW_012140747v1 1881803 164 + 4188776 TTTAAAAATGAACTTACACCCTCAACTACACTTGAACACTAATGACTTGAATGAATCCAGAATTAAAACACACAAATGATTTAC----TTAGATGCAATAAGCACAAACAAGACCCTTCTTGAGGGTTCTGTCCTGCTGTGAACATTGATTAGAGTCCTCGGAACAGA i proCoq1.NW_012140747v1 I 175 C 0 s otoGar3.GL873602 8626234 154 + 8790067 TTTTAAAATGAATTTATGCCCTCAGCTACA----AACGCTGA-----TGAATGAATACAGTATTAAAACACACAAATGATTTAC----TTAGATGGAATAAGCACAAAT-AGGTCTTTCTTGAGGGTTCTTTCCTGATGTGAACATTGATTAGAGACCTCAGAACAGA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76426033 162 + 151834684 TTTGGAACAGAACTTGGGCTCTAGACTACATTTGAATA------ACTTGAATGAATCTAGAATTAAAACACACAAATGATCCACAGGAAGGAAGAGAAGAGGCACAAACAGGACCTCTTTTAAAGGTCCTTTCTTACCTTCACCACTAAATGGAGTCCTCAGAGCAGA i mm10.chr5 C 0 C 0 s canFam3.chr13 48013760 163 + 63241923 TTTTGAAATGAACTTAGGCTCTTGTCTGCACTTGAACACTAATGACTT-AATGAATCCAGACTTAAAACACACAAATGATTTAC----TTATATGGAATAAGCAAAAGTAAGGTCCTTCTTTGGGGTTCTTTCCTGTTGTGAACATTGATAAGCATCACCAGAACAGA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4104646 156 - 5279953 TTTTGAAATTAACTT------TAAGTGACATTTGAACACTAATGACCCGAATGACTCCAGAATTAAAGCACACAAATGATCTGC----TTAGATGGGATGAGCATAAACAAGACCCTTCTTAAGGGTTCTTTCCTGTTGTGAATATTGATTAG--TCATCAGAATAGA i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1790505 1447 + 3286835 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=573227.000000 s hg38.chr4_KI270787v1_alt 76201 56 + 111943 AAGTATTCAGACTTGATTCTACTGAAAATTGCA-AAATGACATTGGTGGGCATTCAG s panTro5.chr4 119640871 56 - 194502333 AAGTATTCAGACTTGATTCTACTGAAAATTGCA-AAATGACATTGGTGGGCATTCAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121054289 56 - 195804263 AAGTATTCAGACTTGATTCTACTGAAAATTGCA-AAATGACATTGGTGGGCATTCAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4485526 56 - 17550833 AAGTATTCAGACTTGATTCCACTGAAAATTGCA-ATATGACATTGGTGGGCATTCAG i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111568049 56 - 190429646 AAGTATTCAGACTTGATTCTACCGAAAATTGCA-ATATGACATTGGTGGGCATTCAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110737238 56 - 189454096 AAGTATTCAGACTTGATTCTACCGAAAATTGCA-ATATGACATTGGTGGGCATTCAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13303732 56 + 26754465 AAGTATTCAGACTTGATTCTACCGAAAATTGCA-ATATGACATTGGTGGGCATTCAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4205291 56 - 5137665 AAGTATTCAGACTTGATTCTACTGAAAATTGCA-ATATGACATTGGTGGGCATTCAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122914906 56 - 135778131 AAGTATTCAGACTTGATTCTACTGAAAATTGCA-ATATGACATTGGTGGGCATTCAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2026975 56 + 2427316 AAGTATTCAGACTTGATTCTACCGAAAATTGGA-ATATGACATTGGTGGGCATTCAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1322558 56 + 1448899 AAGTATTCAGACTTGATTCTACTGAAAATTGCA-ATATGACATTGGTGGGCATTCAG i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1791952 56 + 3286835 AAGTGTTCAGACTTGATTCTGCCAAAAATTGCA-AGGTGACATTGGTAGGCATTTAG i micMur3.chrUn_NW_017968520v1 I 1447 C 0 s proCoq1.NW_012140747v1 1881967 56 + 4188776 AAGTATTCAGACTTGATTCTGCCGAAAATTGCA-AGGTGACATTGGTGGGCATTCAG i proCoq1.NW_012140747v1 C 0 I 220 s otoGar3.GL873602 8626388 56 + 8790067 AAGTATTCAGACTTCATTCTGCTGAAAATTGCA-ATGTGACATTGGTGGACTTTCAG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76426195 57 + 151834684 AAGCAGTCAGAGTGGAATCTGCTGAACACTACAGATGTGATTTGGGTGAGTATAAAG i mm10.chr5 C 0 C 0 s canFam3.chr13 48013923 56 + 63241923 AAGTATTTAGACTTGATTCTGCTGAAAAATGCA-CTGTGACATTGGTGAGTATTCAG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4104802 56 - 5279953 CAGTAGTCAACCTTGACTACACTGAAAAATGCA-ATGTGACATTGGTGGACATTCAG i dasNov3.JH568349 C 0 C 0 e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=87938.000000 s hg38.chr4_KI270787v1_alt 76257 10 + 111943 TTGTTACTTA s panTro5.chr4 119640927 10 - 194502333 TTGTTACTTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121054345 10 - 195804263 TTGTTACTTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4485582 10 - 17550833 TTGTTACTTA i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111568105 10 - 190429646 TTGTTACTTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110737294 10 - 189454096 TTGTTACTTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13303788 10 + 26754465 TTGTTACTTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4205347 10 - 5137665 TTGTTACTTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122914962 10 - 135778131 TTGTTACTTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027031 10 + 2427316 TTGTTACTTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1322614 10 + 1448899 TTGTTACTTA i colAng1.NW_012119221v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1792008 10 + 3286835 CTGTTATTTA i micMur3.chrUn_NW_017968520v1 C 0 I 196 s otoGar3.GL873602 8626444 10 + 8790067 CTGTTATTTA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76426252 9 + 151834684 TTGTTATTG- i mm10.chr5 C 0 C 0 s canFam3.chr13 48013979 10 + 63241923 TTGTTATTTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4104858 10 - 5279953 TTGTTGTTTA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=307104.000000 s hg38.chr4_KI270787v1_alt 76267 49 + 111943 TGACAT---ACCTTGTAATAA---------ATTGCCCTGTTTATAAATTTAATATTTCATA s panTro5.chr4 119640937 49 - 194502333 TGACAG---ACCTTGTAATAA---------ATTGCCCTGTTTATAAATTTAATATTTCATA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121054355 49 - 195804263 TGACAG---ACCTTGTAATAA---------ATTGCCCTGTTTATAAATTTAATATTTCATA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4485592 49 - 17550833 TGACAG---ACCTTGTAATAA---------ATTGCCCTGTTTATAAATTTAATATTTCata i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111568115 49 - 190429646 TGACAG---ACCTTGTAATAA---------ATTGCCCTGTTTATAAATTGAATATTTCATA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110737304 49 - 189454096 TGACAG---ACCTTGTAATAA---------ATTTCCCTGTTTATAAATTGAATATTTCATA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13303798 49 + 26754465 TGACAG---ACCTTGTAATAA---------ATTGCCCTGTTTATAAATTGAATATTTCATA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4205357 49 - 5137665 TGACAG---ACCTTGTAATAA---------ATTGCCCTGTTTATAAATTGAATATTTCata i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122914972 49 - 135778131 TGACAG---ACCTTGTAATAA---------ATTGCCCTGTTTATAAATTGAATATTTCATA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027041 49 + 2427316 TGACAG---ACCTTGTAATAA---------ATTGCCCTGTTTATAAATTGAATATTTCATA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1322624 49 + 1448899 TGACAG---ACCTTGTAATTA---------ATTGCCCTGTTTATAAATTGAATATTTCATA i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8626454 59 + 8790067 TAACAGATAATCTTGTGATACATTGGATATATTGCTCTGTTTCTAGAT--AACATATCATA i otoGar3.GL873602 C 0 I 53 s mm10.chr5 76426261 48 + 151834684 TGATAG--AATCTTCTTATCC---------AATG--CTGCTTTTAAATGTAATACTGTATT i mm10.chr5 C 0 C 0 s canFam3.chr13 48013989 52 + 63241923 TGACAGATAATCTTATGACAT---------ATTGTTTTGTTTCTAGGTATAATATTTCATA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4104868 48 - 5279953 GGACAGATAATCTTGTGACAT---------ATTG--CTGTTTCTAAGC--AGTATTTCATG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792018 196 + 3286835 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=486036.000000 s hg38.chr4_KI270787v1_alt 76316 77 + 111943 ATCCAAATGTCCATGAATGGATGACTAGTTGATGAAATTATAATATGTCTAGATAACATACCATATAATATACTTGT s panTro5.chr4 119640986 77 - 194502333 ATCCAAATGTCCATGAATGGATGACTAGTTGATGAAATTATAATATGTCTAGATAACATACCATATAATATACTTGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121054404 77 - 195804263 ATCCAAATGTCCATGAATGGATGACTAGTTGATGAAATTATAATATGTCTAGATAACATACCATATAATATACTTGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4485641 77 - 17550833 atccaaatgtccatgaatggatgactagttgatgaaattataatacgtctagataaCATACCATATAATATACTTGT i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111568164 77 - 190429646 ATCCAAAAGTCCGTGAATGGATGACTAGTTGATAAAATTATAATATATCCAGATAACATACCATATAATATACTTGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110737353 77 - 189454096 ATCCAAAAGTCCGTGAATGGATGACTAGTTGATAAAATTATAATATATCCAGATAACATACCATATAATATACTTGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13303847 77 + 26754465 ATCCAAAAGTCCGTGAATGGATGACTAGTTGATAAAATTATAATATATCCAGATAACATACCATATAATATACTTGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4205406 77 - 5137665 atccaaatgtccgtgaatggatgactagttgaaaaaattataatatatccagataacataccatacaATATACTTGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122915021 77 - 135778131 ATCCAAATGTCCATGAATGGATGACTAGTTGATAAAATTATAATATATCCAGATAACATACCATATAATATACTTGT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027090 77 + 2427316 ATCCAAATGTCCGTGAATGGATGACTAGTTGATAAAATTATAATATATCCAGATAACATACCATATAATATACTTGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1322673 77 + 1448899 ATCCAAATGTTTGTGAATGGATGACTAGTTGATAAAATTATAATATATCCAGATAACATACCATATAATATACTTGT i colAng1.NW_012119221v1 C 0 C 0 s mm10.chr5 76426309 66 + 151834684 ATCAAACTGAC--TGAGTGGATGACTAGTTGATAAAATTATA-----TACAGA----ATACCATATAATGTGCCTGC i mm10.chr5 C 0 C 0 s canFam3.chr13 48014041 77 + 63241923 ATTCAAATGTCCACAAATGAGTGGCTAGTTGATGAGATTAAAATACAACTACATAATATATCATATAACATACCCAT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4104916 63 - 5279953 ATTTAAAT-TCCATCAATGGATGACTAGTTGATTAAACTGTA-------------AAATATCATAAAATGTACTTGT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792018 196 + 3286835 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8626513 53 + 8790067 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=57984.000000 s hg38.chr4_KI270787v1_alt 76393 9 + 111943 TTAAAATGA s panTro5.chr4 119641063 9 - 194502333 TTAAAATGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121054481 9 - 195804263 TTAAAATGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4485718 9 - 17550833 TTAAAATGA i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111568241 9 - 190429646 TTAAAATGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110737430 9 - 189454096 TTAAAATGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13303924 9 + 26754465 TTAAAATGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4205483 9 - 5137665 TTAAAATGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122915098 9 - 135778131 TTAAAATGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027167 9 + 2427316 TTAAAATGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1322750 9 + 1448899 TTAAAATGA i colAng1.NW_012119221v1 C 0 C 0 s mm10.chr5 76426375 9 + 151834684 TTAAAATGA i mm10.chr5 C 0 I 938 s dasNov3.JH568349 4104979 9 - 5279953 TAAATACGA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792018 196 + 3286835 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8626513 53 + 8790067 I e canFam3.chr13 48014118 0 + 63241923 C e nomLeu3.chr9 69356355 1512 - 118206036 I a score=10571.000000 s hg38.chr4_KI270787v1_alt 76402 2 + 111943 GG s panTro5.chr4 119641072 2 - 194502333 GG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121054490 2 - 195804263 GG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4485727 2 - 17550833 GG i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111568250 2 - 190429646 GG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110737439 2 - 189454096 GG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13303933 2 + 26754465 GG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4205492 2 - 5137665 GG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122915107 2 - 135778131 GG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027176 2 + 2427316 AG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1322759 2 + 1448899 GG i colAng1.NW_012119221v1 C 0 C 0 s dasNov3.JH568349 4104988 2 - 5279953 AG i dasNov3.JH568349 C 0 I 317 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792018 196 + 3286835 I e mm10.chr5 76426384 938 + 151834684 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8626513 53 + 8790067 I e canFam3.chr13 48014118 0 + 63241923 C e nomLeu3.chr9 69356355 1512 - 118206036 I a score=1796235.000000 s hg38.chr4_KI270787v1_alt 76404 380 + 111943 TATAcacaatgagataccatctcacacttgtcagaatggctattattaaaagtcaaaaaataac--atgctggtgagattgcagagaaaagggaatgcttatacactgctggtgggagggtaaactagttcaaccattatggaaagcaatgtagtgattcctcaaagaactaaaaatagcagtatcatttgacccagtaatcccactactgggtatatacccgaaggcatataaatcattctaccagaaagacacatgcacacatacgttcaatgcagcactgttcacaacagcaaagctctaaatgctcatgaacagtagactggataaagaaaatgtggtacatatacactgtggaatactatacagtcataaaaaaaga s panTro5.chr4 119641074 380 - 194502333 TATAcacaatgagataccatctcacacttgtcagaatggctattattaaaagtcaaaaaataac--atgctggtgagattgcagagaaaagggaatgcttatacactgctggtgggagggtaaactagttcaaccattatggaaagcaatgtagtgattcctcaaagaactaaaaatagcagtatcatttgacccagtaatcccactactgggtatatacccgaaggcatataaatcattctaccagaaagacacatgcacacatatgttcaatgcagcactgttcacaacagcaaagccctaaatgctcatgaacagtagactggataaagaaaatgtggtacatatacaccgtggaatactatacagtcataaaaaaaga i panTro5.chr4 C 0 C 0 s panPan2.chr4 121054492 380 - 195804263 TATAcacaatgagataccatctcacacttgtcagaatggctattattaaaagtcaaaaaataac--atgctggtgagattgcagagaaaagggaatgcttatacactgctggtgggagggtaaactagttcaaccattatggaaagcaatgtagtgattcctcaaagaactaaaaatagcagtatcatttgacccagtaatcccactactgggtatatacccgaaggcatataaatcattctaccagaaagacacatgcacacatatgttcaatgcagcactgttcacaacagcaaagccctaaatgctcatgaacagtagactggataaagaaaatgtggtacatatacaccgtggaatactatacagtcataaaaaaaga i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4485729 379 - 17550833 TATAcacaat-agataccatctcacacttgtcagaatggctattattaaaagtcaaaaaataac--atgctggtgagattgcagagaaaagggaatgcttatgcactgctggtgggagggtaaactagttcaaccattatggaaagcaatgtagtgattcctcaaagaactaaaaatagcagtatcatttgacccagtaatcccactactgggtatatacccgaaagcatataaatcattctaccagaaagacacatgcacacatatgttcaatgcagcactgttcacaacagcaaagccctaaatgctcatgaacagtagactggataaagaaaatgtggtacatatacaccgtggaatactatacagtcataaaaaaaga i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111568252 380 - 190429646 TATAcaaaatgagatatcatctcacactagtcagaatggctattattaaaagtc-aaaaataacagatgctggtgtggttgcagaggaaagggaatgcttatacactgctggtgagagggtaaactagttcaactattgtggaaagcaatgtagtgattcctcagagaactaaaaatagcagcatcatttgacccagcaatcccactactgggtatatacccaaaggcatataaatcattctatcataaagacacatgcactcatatgttcactgcagcactattcacaacagcaaaaccctaaatgcccatcaacagtagactggataaagaaaatgtggtaaatatacaccatggaatactatacagttat-aaaaaaga i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110737441 380 - 189454096 TATAcaaaatgagatatcatctcacactagtcagaatggctattattaaaagtc-aaaaataacagatgctggtgtggttgcagaggaaagggaatgcttatacactgctggtgagagggtaaactagttcaaccattgtggaaagcaatgtagtgattcctcagagaactaaaaatagcagcatcatttgacccagcaatcccactactgggtatatacccaaaggcatataaatcattctatcataaagacacatgcactcatatgttcactgcagcactattcacaacagcaaaaccctaaatgcccatcaacagtagactggataaagaaaatgtggtaaatatacaccatggaatactatacagttat-aaaaaaga i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13303935 380 + 26754465 TATAcaaaatgagatatcatctcacactagtcagaatggctattattaaaagtc-aaaaataacagatgctggtgtggttgcagaggaaagggaatgcttatacactgctggtgagagggtaaactagttcaaccattgtggaaagcaatgtagtgattcctcagagaactaaaaatagcagcatcatttgacccagcaatcccactactgggtatatacccaaaggcatataaatcattctatcataaagacacatgcactcatatgttcactgcagcactattcacaacagcaaaaccctaaatgcccatcaacagtagactggataaagaaaatgtggtaaatatacaccatggaatactatacagttat-aaaaaaga i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4205494 380 - 5137665 TATAcaaaatgagatatcatctcacactagtcagaatggctattattaaaagtc-aaaaataatagatgctggtgtggttgcagaggaaagggaatgcttatacactgctggtgagagggtaaactagttcaaccattgtggaaagcaatgtagtgattcctcagagaactaaaaatagcagcatcatttgacccagcaatcccactactgggtatatacccaaaggcatataaatcattctaccataaagatacatgcactcatatgttcactgcagcactattcacaacagcaaagccctaaatgcccatcaacggtagactggataaagaaaatgtggcaaatatacaccatggaatactatacagtcat-aaaaaaga i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122915109 380 - 135778131 TATAcaaaatgagatatcatcttacactagtcagaatggctattattaaaagtc-aaaaataatagatgctggtgtggttgcagaggaaagggaatgcttatacactgctggtgagagggtaaactagttcaactattgtggaaagcaatgtagtgattcctcagagaactaaaaatagcagcatcattcgacccagcaatcccactactgggtatatacccaaaggcatataaatcattctaccataaagatacatgcactcatatgttcactgcagcactattcacaacagcaaagccctaaatgcccatcaacggtagactggataaagaaaatgtggtaaatatacaccacggaatactatacagtcat-aaaaaaga i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027178 380 + 2427316 TATAcaaaatgagatatcatctcacactagtcaggatggctattattaaaagtc-aaaaataacagatgctggtgcggttgcagaggaaagggaatgcttatacactgctggtgagagggtaaactagttcaaccattgtggaaagcaatgtagtgattcctcagagaactaaaaatagcagcatcatttgacccagcaatcccactactgggtatatacccaaaggcatataaatcattctaccataaagacacatgcactcatatgttcactgcagcactattcacaacagcaaaaccctaaatgcccatcaacagtagactggataaagaaaatgtggcaaatatacaccatggaatactatacagtcat-aaaaaaga i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1322761 380 + 1448899 TATAcaaaatgagatgccatctcacactagtcagaatggctattattaaaagtc-aaagataacagatgctggtgaggttgcagaggaaagggaatgcttatacactgctggtgagagggtaaactagttcaaccattgtggaaagcaatgtagtgattccttagagaactaaaaatagcagcatcatttgacccagcaatcccactactgggtatatacccaaaggcatataaatcattctaccataaagacacatgcactcatatgttcactgcagcactattcacaacagcaaagccctaaatgcccatcaacggtagactggataaagaaaatgtggtaaatatacaccatggaatactatacagtcat-aaaaaaga i colAng1.NW_012119221v1 C 0 C 0 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792018 196 + 3286835 I e mm10.chr5 76426384 938 + 151834684 I e dasNov3.JH568349 4104990 317 - 5279953 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e calJac3.chr3 53029991 1327 - 190850796 I e otoGar3.GL873602 8626513 53 + 8790067 I e canFam3.chr13 48014118 0 + 63241923 C e nomLeu3.chr9 69356355 1512 - 118206036 I a score=39413.000000 s hg38.chr4_KI270787v1_alt 76784 7 + 111943 atgagat s panTro5.chr4 119641454 7 - 194502333 atgagat i panTro5.chr4 C 0 C 0 s panPan2.chr4 121054872 7 - 195804263 atgagat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4486108 7 - 17550833 atgagat i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111568632 7 - 190429646 atgagat i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110737821 7 - 189454096 atgagat i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13304315 7 + 26754465 atgagat i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4205874 7 - 5137665 atgagat i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122915489 7 - 135778131 atgagat i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027558 7 + 2427316 atgagat i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1323141 7 + 1448899 atgagat i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53031318 7 - 190850796 atcagac i calJac3.chr3 I 1327 C 0 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792018 196 + 3286835 I e mm10.chr5 76426384 938 + 151834684 I e dasNov3.JH568349 4104990 317 - 5279953 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191389 0 - 15139346 C e otoGar3.GL873602 8626513 53 + 8790067 I e canFam3.chr13 48014118 0 + 63241923 C e nomLeu3.chr9 69356355 1512 - 118206036 I a score=31203.000000 s hg38.chr4_KI270787v1_alt 76791 5 + 111943 catgt s panTro5.chr4 119641461 5 - 194502333 catgt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121054879 5 - 195804263 catgt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4486115 5 - 17550833 catgt i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111568639 5 - 190429646 tatgt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110737828 5 - 189454096 tatgt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13304322 5 + 26754465 tatgt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4205881 5 - 5137665 tatgt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122915496 5 - 135778131 tatgt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027565 5 + 2427316 tatgt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1323148 5 + 1448899 tatgt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53031325 5 - 190850796 catgt i calJac3.chr3 C 0 I 1 s saiBol1.JH378162 8191389 5 - 15139346 catgt i saiBol1.JH378162 C 0 I 1 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792018 196 + 3286835 I e mm10.chr5 76426384 938 + 151834684 I e dasNov3.JH568349 4104990 317 - 5279953 I e aotNan1.NW_018493494v1 9393149 2 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e otoGar3.GL873602 8626513 53 + 8790067 I e canFam3.chr13 48014118 0 + 63241923 C e nomLeu3.chr9 69356355 1512 - 118206036 I a score=657430.000000 s hg38.chr4_KI270787v1_alt 76796 88 + 111943 cctcttcaggaacatggatgaagctggaggccgttatccttagcaaactaacacgggaacagaaaaccaaatactgcatgttctcact s panTro5.chr4 119641466 88 - 194502333 cctcttcaggaacatggatgaagctggaggccgttatccttagcaaactaacacgggaacagaaaaccaaatactgcatgttctcact i panTro5.chr4 C 0 C 0 s panPan2.chr4 121054884 88 - 195804263 cctcttcaggaacatggatgaagctggaggccgttatccttagcaaactaacacgggaacagaaaaccaaatactgcatgttctcact i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4486120 88 - 17550833 cctcttcaggaacatggatgaagctggaggccgttatccttagcaaactaacacgggaacagaaaaccaaatactgcatgttctcact i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111568644 88 - 190429646 cctctgcagaaacatggaaggagctggaggtcactatccttagcaaaccaacacaggaacagaaaaccaaatactgtatgtcatcact i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110737833 88 - 189454096 cctctgcagaaacatggaaggagctggaggtcactatccttagcaaaccaacacaggaacagaaaaccaaatactgtatgtcatcact i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13304327 88 + 26754465 cctctgcagaaacatggaaggagctggaggtcactatccttagcaaaccaacacaggaacagaaaaccaaatactgtatgtcatcact i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4205886 88 - 5137665 cctctgcagaaacatggatggagctggaggtcactatccttagcaaaccaacacaggaacagaaaaccaaatactgtatgtcatcact i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122915501 88 - 135778131 cctctgcagaaacatggatggagctggaggtcactatccttagcaaaccaacacaggaacagaaaaccaaatactgtatgtcatcact i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027570 88 + 2427316 cctctgcagaaacatggaaggagctggaggtcactatccttagcaaaccaacacaggaacagaaaaccaaatactgtatgtcatcact i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1323153 88 + 1448899 cctctacagaaacatggatggagctggaggtcactatccttaacaaaccaacacaggaacagaaaaccaaatactgtatgtcatcact i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53031331 88 - 190850796 cctctgcaggaacacagatggagctggagaccattatcctcagcaaactaacacaggaacagaaaaccaaatactgcacgttctcact i calJac3.chr3 I 1 C 0 s saiBol1.JH378162 8191395 88 - 15139346 cctctgcaggaacatggatggagctggaggccattatcctcagcaaactaatgcaggaacagaaaaccaaatactgcacattctcact i saiBol1.JH378162 I 1 C 0 s aotNan1.NW_018493494v1 9393151 88 - 11631747 cctctgcagggacacggatggagctggaggccattatcctcagcaaactaacgcaggaacagaaaaccaaatactgcatgttctcact i aotNan1.NW_018493494v1 I 2 C 0 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792018 196 + 3286835 I e mm10.chr5 76426384 938 + 151834684 I e dasNov3.JH568349 4104990 317 - 5279953 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e otoGar3.GL873602 8626513 53 + 8790067 I e canFam3.chr13 48014118 0 + 63241923 C e nomLeu3.chr9 69356355 1512 - 118206036 I a score=1575611.000000 s hg38.chr4_KI270787v1_alt 76884 241 + 111943 tataagtgggcgctaaat----agaactt-----acagacacaaaaaggggaacattgggaccttcttgaggtaggaggttgggaagagagagaggatcagaaagaaaaagaaactgtcaggtactacgcttagtacccaggtgatgaaataatctgtacaccagacctctgagtcatgagtttaactatatatcaaacctgcacatgtacccctgaacctaaaaGCTAAACTA--TTTTTAAAA--ATTTAAA s panTro5.chr4 119641554 240 - 194502333 tataagtgggcgctaa-t----agaactt-----acggacacaaaaaggggaacattgggaccttcttgaggtaggaggttgggaagagagagaggatcagaaagaaaaagaaactgtcaggtactacgcttagtacccaggtgatgaaataatctgtacaccagacctctgagtcatgagtttaactatatatcaaacctgcacatgtacccctgaacctaaaaGCTAAACTA--TTTTTAAAA--ATTTAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121054972 240 - 195804263 tataagtgggcgctaa-t----agaactt-----acggacacaaaaaggggaacattgggaccttcttgaggtaggaggttgggaagagagagaggatcagaaagaaaaagaaactgtcaggtactacgcttagtacccaggtgatgaaataatctgtacaccagacctctgagtcatgagtttaactatatatcaaacctgcacatgtacccctgaacctaaaagctaaacta--ttttaaaaa--aTTTAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4486208 241 - 17550833 tataagtaggcgctaaat----agaactt-----acggacacaaaaaggggaacactgggaacttcttgaggtaggaggttgggaagagagagaggatcagaaagaaaaagaaactgtcaggtactgcgcttagtacccaggtgatgaaataatctgtacaccagacctctgagtcatgagtttaactatatatcaaacctgcacatgtacccctgaacctaaaaGCTAAACTA--TTTTTTAAA--ATTTAAA i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111568732 242 - 190429646 tataagtaggcgctaaatagtgagaactt-----atggacacaaaaaggggaacattgggacc--ctcgagggaggaggttaggaagagagagaggatcagaaagaaaaagaaactgtcaggtactatgc-tagtgcccaggtgataaaataatctgtacaccaaatctctgagtcatgaatttaactatatatcaaacctgcacatgtatccctgaacctaaaagttaaacca--tttaaaaaa--TTTTTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110737921 242 - 189454096 tataagtaggcgctaaatagtgagaactt-----atggacacaaaaaggggaacattgggacc--ctcgagggaggaggttaggaagagagagaggatcagaaagaaaaagaaactgtcaggtactatgc-tagtgcccaggtgataaaataatctgtacaccaaatctctgagtcatgaatttaactatatatcaaacctgcacatgtacccctgaacctaaaagttaaacta--tttaaaaaa--aTTTTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13304415 242 + 26754465 tataagtaggcgctaaatagtgagaactt-----atggacacaaaaaggggaacattgggacc--ctcgagggaggaggttaggaagagagagaggatcagaaagaaaaagaaactgtcaggtactatgc-tagtgcccaggtgataaaataatctgtacaccaaatctctgagtcatgaatttaactatatatcaaacctgcacatgtacccctgaacctaaaagttaaacta--tttaaaaaa--aTTTTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4205974 244 - 5137665 tataagtaggcgctaaatagtgagaactt-----atggacacaaaaaggggaacattgggaccttcttgagggaggaggttgggaagagagagaggatcagaaagataaagaaactgtcaggtagtatgc-tagtgcccaggtgataaaataatctgtacaccaaatctctgagtcatgaatttaactatatatcaaacctgcacatgtatccctgaacctaaaagttaaacta--tttaaaaaa--TTTTTTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122915589 243 - 135778131 tataagtaggcgctaaatagtgagaactt-----atggacacacaaaggggaacattgggaccttcttgagggaggaggttgggaagagagagaggatcagaaagaaaaagaaactgtcaggtactatgc-tagtgcccaggtggtaaaataatctgtacaccaaatctctgagtcatgaatttaactatatatcaaacctgcacatgtacccctgaacctaaaagttaaacta--ttt-aaaaa--aTTTTTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027658 244 + 2427316 tataagtaggcgctaaatagtgagaactt-----atggacacaaaaaggggaacattgggaccttcttgagggaggaggttgggaagagagagaggatcagaaagaaaaagaaactgtcaggtactatgc-tagtgcccaggtgataaaataatctgtacaccaaatctctgagtcatgaatttaactatatatcaaacctgcacatgtacccccgaacctaaaagttaaacta--tttaaaaaa--aTTTTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1323241 241 + 1448899 tataagtaggcgctaaatagtgagaactt-----acggacacaaaaaggggaacattgggaccttcttgagggaggaggttggga--agagagaggatcagaaagaaaaagaaactgtcaggtactatgc-tagtgcccaggtgatgaaataatctgtacaccaaatctctgagtcatgagtttaactatatattaaacctgcacatgtacccctgaacctaaaagttaaacta--ttt-aaaaa--aTGTTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53031419 235 - 190850796 tgtaagtaggtgctaaatagtgagaactt-----atggacacaaaaaggggaacactaggaccttct-gggggaggaggtttggaggagggagaggatcag---aaaaaagaaactgtcaggtactatgcttagtacccaggtgaaaaaat-atctgtacaccaaac--ctgagttatgagtttaactacaaaccaagcctgcacatgtacccctgaacgtaaaagttaaacta--ttaaaaaaa--ATTT--- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8191483 240 - 15139346 tataagtaggtgctaaatagggagaactt-----acggacactaaaaggggaacactaggaccttct-gggggatgaggattggaggagggagaggatcag--aaaaaaagaaactgtcaggtactatgcttagtgcccaggtgaaaaaat-atctttacaccagaccgctgagtgatgagtttaactacaaaccaaacctgcacatgtactcctgaatgtaaaagttaaacta--ttaaaaaaaTTTTTT--- i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9393239 231 - 11631747 tataagtaggtgctaaatagtgagaactt-----atggacacaaaaaggggaacactaggaccttct-gagggaggaggtttggaggagggagaggatcag--aaaaaaagaaactgtcaggtactatgcttaatatccaggtgacgaaat-atctgtacaccaaacctct---------atttaactacaaaccaaatctgcacatatacccctgaacataaaagttAAACTATTTTTTAAAAA--ATTT--- i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4105307 143 - 5279953 tagaagtggtcacaaaag----aacactcagcaaatggacacagagagtagacaactggg----------------------gggaaggggagagaaattaataaaaaataaatcttT----------------------GGGAAAAAAAAAA---------CATATCTTTGGGTC------TCAGTAATCTATTATT-------------------------AAGTGAAA----------------------- i dasNov3.JH568349 I 317 C 0 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792018 196 + 3286835 I e mm10.chr5 76426384 938 + 151834684 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e otoGar3.GL873602 8626513 53 + 8790067 I e canFam3.chr13 48014118 0 + 63241923 C e nomLeu3.chr9 69356355 1512 - 118206036 I a score=12588.000000 s hg38.chr4_KI270787v1_alt 77125 3 + 111943 ACA s panTro5.chr4 119641794 3 - 194502333 ACA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121055212 3 - 195804263 ACA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4486449 3 - 17550833 ACA i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111568974 3 - 190429646 AAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110738163 3 - 189454096 AAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13304657 3 + 26754465 AAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4206218 3 - 5137665 AAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122915832 3 - 135778131 AAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027902 3 + 2427316 AAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1323482 3 + 1448899 AAA i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8626566 3 + 8790067 ata i otoGar3.GL873602 I 53 C 0 s dasNov3.JH568349 4105450 3 - 5279953 AAA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792018 196 + 3286835 I e mm10.chr5 76426384 938 + 151834684 I e aotNan1.NW_018493494v1 9393470 0 - 11631747 C e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e saiBol1.JH378162 8191723 0 - 15139346 C e calJac3.chr3 53031654 0 - 190850796 C e canFam3.chr13 48014118 0 + 63241923 C e nomLeu3.chr9 69356355 1512 - 118206036 I a score=524895.000000 s hg38.chr4_KI270787v1_alt 77128 76 + 111943 TAAAAATGAGGTAT--------AT-CTATATATACTAATGAGGTATTACTAAGTGA----agagagagagagacagtatgggagtacac s panTro5.chr4 119641797 76 - 194502333 TAAAAATGAGGTAT--------AT-CTATATATACCAATGAGGTATTACTAAGTGA----agagagagagagacagtatgggagtgcac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121055215 76 - 195804263 TAAAAATGAGGTAT--------AT-CTATATATACCAATGAGGTATTACTAAGTGA----agagagagagagacagtatgggagtgcac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4486452 79 - 17550833 TAAAAATGAGGTAT--------AT-CTATATATACC-ATGAGGTATTACTAAGTGAagagagagagagagagacagtatgggagtacac i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111568977 72 - 190429646 TAAAAATGAGGTAT--------AT-CTATATATATCAATGATGTATTACTAAGTGA--------AGAGAGGGACAGTATGGGAATACAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110738166 72 - 189454096 TAAAAATGAGGTAT--------AT-CTATATATATCAATGATGTATTACTAAGTGA--------AGAGAGGGACAGTATGGGAATACAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13304660 72 + 26754465 TAAAAATGAGGTAT--------AT-CTATATATATCAATGATGTATTACTAAGTGA--------AGAGAGGGACAGTATGGGAATACAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4206221 72 - 5137665 TAAAAATGAGGTAT--------AT-CGATATATACCAATGATGTATTACTAAGTGA--------AGAGAGGGACAGTATGGGAATATAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122915835 72 - 135778131 TAAAAATGAGGTAT--------AT-CTATATATACCAATGATGTATTACTAAGTGA--------AGAGAGGGACAGTATGGGAATACAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027905 72 + 2427316 TAAAAATGAGGTAT--------AT-CTACATATACCAATGATGTATTACTAAGTGA--------AGAGAGGGACAGTATGGGAATACAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1323485 72 + 1448899 TAAAAATGAGGCAT--------AT-CTATATATACCAATGATGTATTACTAAGTGA--------AGAGAGGGACAGTATGGGAATACAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53031654 68 - 190850796 ------AAATATAT--------AT-CTATATATACCAGTGAGGTATTACTAAGTGA------AGAGACAGAGACAGTATGGGACTACAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8191723 68 - 15139346 ------TAACATAT--------AT-CTATATATACCAGTGAGGTATTACTAAGTGA------AGAGACAGAGACAGTATGGGAGTACAC i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9393470 70 - 11631747 ------TAATATAT--------AT-CTATATATACCAATGAGGTATTACTAAGTGA----agagagagagagacagtatgggagtatac i aotNan1.NW_018493494v1 C 0 I 11 s otoGar3.GL873602 8626569 71 + 8790067 taCCAATGAAGTATATATACCAAT-CTATATATACCAATGAAGTAT---TGAGTGA--------AGAGAGGG------TGTAAGCACAC i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48014118 65 + 63241923 TAAAAATGAGGCAT--------AT-CTATATATGCCAA-----------AAAGTGA---GAAATAGAAAGATCTATTATAC-AATATAC i canFam3.chr13 C 0 I 6 s dasNov3.JH568349 4105453 67 - 5279953 GGAAGATGTAATAC--------CTACTACACAGGATGGTCACATTTTTATATATAT----ATGGAGAGAGCAAGAGTAT---------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792018 196 + 3286835 I e mm10.chr5 76426384 938 + 151834684 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=27056.000000 s hg38.chr4_KI270787v1_alt 77204 16 + 111943 actggggga-gaggggg s panTro5.chr4 119641873 16 - 194502333 actgggggg-gaggggg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121055291 16 - 195804263 actggcggg-gagggga i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4486531 17 - 17550833 actggggggagaggggg i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569049 15 - 190429646 ACTGGGGga-g-gggga i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110738238 15 - 189454096 ACTGGGGga-g-gggga i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13304732 15 + 26754465 ACTGGGGga-g-gggga i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4206293 15 - 5137665 ACTGGGGga-g-gggga i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122915907 15 - 135778131 ACTGGGGAA-G-GGGGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027977 15 + 2427316 ACTGGGGga-g-gggga i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1323557 15 + 1448899 ACTGGGGga-g-gggga i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53031722 9 - 190850796 --TAGAAGG-G-G---- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8191791 9 - 15139346 --TAGAAGT-G-G---- i saiBol1.JH378162 C 0 C 0 s otoGar3.GL873602 8626640 11 + 8790067 ACCAGGAAA-A-A---- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48014189 12 + 63241923 ACTGTATAT-G-TG--- i canFam3.chr13 I 6 C 0 s dasNov3.JH568349 4105520 12 - 5279953 ATGgagaga-g-ag--- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792018 196 + 3286835 I e mm10.chr5 76426384 938 + 151834684 I e aotNan1.NW_018493494v1 9393540 11 - 11631747 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=24094.000000 s hg38.chr4_KI270787v1_alt 77220 6 + 111943 agagag s panTro5.chr4 119641889 6 - 194502333 agagag i panTro5.chr4 C 0 C 0 s panPan2.chr4 121055307 6 - 195804263 ggagag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4486548 6 - 17550833 agagag i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569064 6 - 190429646 ggggag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110738253 6 - 189454096 ggggag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13304747 6 + 26754465 ggggag i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4206308 6 - 5137665 gggggg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122915922 6 - 135778131 GGGgag i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027992 6 + 2427316 gggggg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1323572 6 + 1448899 agggag i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8191800 5 - 15139346 -GGgag i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9393551 4 - 11631747 --agag i aotNan1.NW_018493494v1 I 11 C 0 s canFam3.chr13 48014201 2 + 63241923 --TG-- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4105532 6 - 5279953 agagtg i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792018 196 + 3286835 I e mm10.chr5 76426384 938 + 151834684 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e calJac3.chr3 53031731 0 - 190850796 C e otoGar3.GL873602 8626651 0 + 8790067 C e nomLeu3.chr9 69356355 1512 - 118206036 I a score=148014.000000 s hg38.chr4_KI270787v1_alt 77226 92 + 111943 agagagagaaag-ag----agagagaaa--------gatt----agatagat-gatagat--------------agata---gatagatagatagatagatagatagatagat-------------agaC---AG---AGATC-TTT s panTro5.chr4 119641895 64 - 194502333 agagagagaaag-a------------------------Tt----agatagat-gatagat--------------agata---gatagatagatagatagataga-----------------------------------GATC-TTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121055313 84 - 195804263 agagagagaaag-ag----agagagaaa--------gaTt----agatgata-gatagat--------------agata---gatagatagatagatagatagatagataga---------------------------GATC-TTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4486554 73 - 17550833 agagagaga-----------------------------Tt----agatagat-gatagat--------------agata---gatagatagatagatagatagatagatagat-------------agat---------aATC-TTT i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569070 104 - 190429646 agagagagaaag-aa----agagagattagaaagatggat----agatagatagatagat--------------agata---gatagatagatagatagatagatggatagat-------------agataAAAG---AGATC-TTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110738259 100 - 189454096 agagagagaaag-aa----agagagattagaa----agat----agatagatagatagat--------------agata---gatagatagatagatagatagatagatagat-------------agataAAAG---AGATC-TTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13304753 108 + 26754465 agagagagaaag-aaagagagagagattagaaagatagat----agatagatagatagat--------------agata---gatagatagatagatagatagatagatagat-------------agataAAAG---AGATC-TTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4206314 88 - 5137665 agagagagaaag-ag----agagagat--------------------tagatagatagat--------------agata---gatagatagatagatagatagatagatagat-------------agataAAAG---AGATC-TTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122915928 96 - 135778131 agagagagaaag-ag----agagagaga--------gatt----agatagaaagatagat--------------agata---gatagatagatagatagatagatagatagat-------------agataAAAG---AGATC-TTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2027998 96 + 2427316 agagagagaaag-ag----agagagatt--------agat----agaaagatagatagat--------------agata---gatagatagatagatagatagatagatagat-------------agataAAAG---AGATC-TTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1323578 103 + 1448899 agagagagaaag-aa----agagagagaAATtagataga-----agatagatagatagat--------------agata---gatagatagatagatagatagatagatagat-------------agatagaag---atGTC-TTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53031731 99 - 190850796 --------------G----AGAGAGAGA--------GATt----agatagat-ggtagata-----------gaagatagatgatagatagatagatagatagatagatagatagatagac-agacagacagatG---AGATC--TT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8191805 100 - 15139346 agagagaaaaaa-ag----agagagaga--------gaTt----agatagat-gatagata-----------gaagatagatgatagacagacagatagatatatagatagat-------------agacagaCG---AGGTC--TT i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9393555 86 - 11631747 aaagagaaaaaagag----agagagaga--------gattagacagatagat-gataggta-----------gaagata----atagaca-----------------atagat-------------agacagcag---agGTCTTTT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8626651 30 + 8790067 ----------------------------------------------------------------------------ATA----ATAGAACCATATATACATAAAAGATTA------------------------------------- i otoGar3.GL873602 C 0 I 1 s mm10.chr5 76427322 118 + 151834684 agatagagacat-aa----atacataaa-----------t----acatagat-gatagatatttatatagttacaaata--tgatagatggataggt-gatacaaacatagatgactacttgacagacatagatggatagat----- i mm10.chr5 I 938 I 1 s canFam3.chr13 48014203 54 + 63241923 -TACAGAGAAAG-AC----AGAAAGAAT----------AC----ACACAGGA-AAAAGAC------------TTACATA--TGATAAAT---------------------------------------------------------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4105538 68 - 5279953 agagcaagcaag-ag----acagag-------------------agagaggcaagaagag--------------agaag---gagagTTGTAATGATAGATATCTGCGC-------------------------------------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1882023 220 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792018 196 + 3286835 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=2125242.000000 s hg38.chr4_KI270787v1_alt 77318 187 + 111943 TTTTTTTCAGGGGTTACTTCTCCATGGTAAAAATATTGAGTGTTTTATTTTTAAGTTTCTTCAGTCTTTATA---------------------------------TTTTT--------TACAGTGTCCAGTTGTAGCACAGA-GAAACAGG----AGATAAATAAATAAGGTTTGTATTTATCATGGCCAGCAGAGAATCT---------------------CAAAGCTTAACCAAAAGTTTGTAT-------TG-TTCCTT s panTro5.chr4 119641959 186 - 194502333 TTTTTT-CAGGGGTTACTTCTCCATGGTAAAAATATTGAGTGTTTTATTTTTAAGTTTCTTCAGTCTTTATA---------------------------------TTTTT--------TACAGTGTCCAGTTGTAGCACAGA-GAAACAGG----AGATAAATAAATAAGGTTTGTATTTATCATGGCCAGCAGAGAATCT---------------------CAAAGCTTAACCAAAAGTTTGTAT-------TG-TTCCTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121055397 184 - 195804263 TTTT---CAGGGGTTACTTCTCCATGGTAAAAATATTGAGTGTTTTATTTTTAAGTTTCTTCAGTCTTTATA---------------------------------TTTTT--------TACAGTTTCCAGTTGTAGCACAGA-GAAATAGG----AGATAAATAAATAAGGTTTGTATTTATCATGGCCAGCAGAGAATCT---------------------CAAAGCTTAACCAAAAGTTTGTAT-------TG-TTCCTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4486627 187 - 17550833 TTTTTTTCAGGGGTTACTTCTCCATGGTAAAAATATTGAGTGTTTTATTTTTAAGTTTCTTCAGTCTTTATA---------------------------------TTTTT--------TACAGTGTCCAGTTGTAGCACAGA-GAAACAGG----AGATAAATAAATAAGGTTTGTATTTATCATGGCCAGCAGAGAATCT---------------------CAAAGCTTAACCAAAAGTTTGTAT-------TG-TTCCTT i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569174 185 - 190429646 TATTTT-CAGGGATTACTTCTCCATGGCAAAAATATTGAATGTTCTATTTTTAAGTTTCTTCAGTC-TTATA---------------------------------TTTTT--------TACAGTGTCCAGTTGTAATACAGA-GGAATAGG----AGACAAATAAATAAGGCTTGTATTTATCATGGCCAGCAGAGAATCT---------------------CAAAGCTTAACCAAAAGGTTGTAT-------TG-TTCCTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110738359 185 - 189454096 TATTTT-CAGGGATTACTTCTCCATGGCAAAAATATTGAATGTTCTATTTTTAAGTTTCTTCAGTC-TTATA---------------------------------TTTTT--------TACAGTGTCCAGTTGTAGTACAGA-GGAATAGG----AGACAAATAAATAAGGCTTGTATTTATCATGGCCCGCAGAGAATCT---------------------CAAAGCTTAACCAAAAGGTTGTAT-------TG-TTCCTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13304861 185 + 26754465 TATTTT-CAGGGATTACTTCTCCATGGCAAAAATATTGAATGTTCTATTTTTAAGTTTCTTCAGTC-TTATA---------------------------------TTTTT--------TACAGTGTCCAGTTGTAGTACAGA-GGAATAGG----AGACAAATAAATAAGGCTTGTATTTATCATGGCCAGCAGAGAATCT---------------------CAAAGCTTAACCAAAAGGTTGCAT-------TG-TTCCTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4206402 185 - 5137665 TATTTT-CAGGGGTTACTTCTCCATGGCAAAAATATTGAATGTTCTATTTTTAAGTTTCTTCAGTC-TTATA---------------------------------TTTTT--------TACAGTGTCCAGTTGTAGCACAGA-GGAATAGG----AGACGAATAAATAAGGCTTGTATTTATCATGGCCAGCAGAGAATCT---------------------CAAAGCTTAACCAAAAGGTTGTAT-------TG-TTCCTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122916024 185 - 135778131 TATTTT-CAGGGATTACTTCTCCATGGCAAAAATATTGAACGTTCTATTTTTAAGTTTCTTCAGTC-TTATA---------------------------------TTTTT--------TACAGTGTCCAGTTGTAGCACAGA-GGAATAGG----AGACAAATAAATAAGGCTTGTATTTATCATGGCCAGCAGAGAATCT---------------------CAAAGCTTAACCAAAAGGTTGTAT-------TG-TTCCTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2028094 185 + 2427316 CATTTT-CAGGGATTACTTCTCCATGGCAAAAATATTGAATGTTCTATTTTTAAGTTTCTTCAGTC-TTATA---------------------------------TTTTT--------TACAGTGTCCAGTTGTAGCACAGA-GGAATAGG----AGACGAATAAATAAGGCTTGTATTTATCATGGCCAGCAGAGAATCT---------------------CAAAGCTTAACCAAAAGGTTGTAT-------TG-TTCCTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1323681 185 + 1448899 TATTTT-CAGGGATTACTTCTCCATGGCAAAAATATTGAATGTTCTATTTTTAAGTTTCTTCAGTC-TTATA---------------------------------TTTTT--------TACAGTGTCCAGTTGTAGCACAGA-GGAATAGG----AGACAAATAAATAAGGCTTGTATTTATCATGGCCAGCAGAGAATCT---------------------CAAAGCTTAACCAAAAGGTTGTAT-------TG-TTCCTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53031830 187 - 190850796 TTTTTT-CAGGGGTTAC-TCTCCAAGGTAAAAACATTGAGTGTCCTATTTTTAAGTTTTCTCAGT-TTTATA---------------------------------TCTTTTTTTT------AGTGTCCAATTGTAGCACAGA-AGAATAGG----GGATAAATAAATAAGGTTTGTATTGATCATGGCCAACAGAGGATCT---------------------CAAAGTTTAACCAAAAGGTCGTAT-------TGACGTATT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8191905 194 - 15139346 TTTTTT-CAGGGGTTAT-TCTCTAAGGTAAAAACATTGAGTGTCCTATTTTTAAGTTTCCTCAGTCTTTATA---------------------------------TCTTTTTTTTTTTTACAGTGTCCAATTGTAGCACAGA-GGAATAGG----GGATAAATAAATAAAGTTTGTATTTATCATGGCCAACAGAGAATCT---------------------CAGAGCTTAACCAAAAGGTTGTAT-------TGATGTATT i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9393641 180 - 11631747 TTTTTT-CAGGGGTTAC-TTTCCAGGGTAAAAACATTGAGTGTCCTATTTTCAAGTTTCCTCAGTCTTCATA---------------------------------TCTTTTTTTT---TACAGTGTCCAATTGTAGCACA----------------GATAAATAAATAAGGATTGTATTTATCATGGCCAACAGAGAATCT---------------------CAAAGCTTAACCAAAAGGTTGTAT-------TGATATATT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1792214 188 + 3286835 TTTTTT-CAGGAGTTACTTCTCAAGGGTCAAAATATTTAATGTTCCATTTTTAGGTTTCTTCAGTCTTTATA---------------------------------TCTTTTT------TACAGTGTTCAGTTGTAGCACAGA-GGAATAAG----GGATAAATAAATAAGGTTTTTATTTATTATGGCCAGTAGAGAATAT---------------------CAAAACTTAATCAAAAAGTCTTAC-------TG-TTCTTT i micMur3.chrUn_NW_017968520v1 I 196 C 0 s proCoq1.NW_012140747v1 1882243 184 + 4188776 TTTTTT-CAGGGGTTACTTCTCAAGGGTCAAAATATTGAATGTTCTATTTTTAAGTTTCTTCAGTCTTTATA---------------------------------TTGCTTT------CACAGTGTTCAGTTGTAGCACAGA-GGAATAAG----GTATAAATAAA----GTTTTTATCTATCATGGCCAGTAGAGAATCT---------------------CAAAACTTAATCAAAAAGTCTTAT-------TG-TTCTTT i proCoq1.NW_012140747v1 I 220 C 0 s otoGar3.GL873602 8626682 188 + 8790067 TTATTT-CAGGGGTTGCTTCTCAAGGGTCAAAATATTGAATGTTCTATTTTTAAGTTTCTTCAGTCTTTATA---------------------------------TCTTTTT------TACAGTGTTCACTTGTAGCACAGA-GGAATAAG----GGATAAATCAATAAGGTTTTTATTTATCATGGCCAGCAGAGAATCT---------------------TAAAGCTTAATCAAAAAGTCTTAA-------TG-TTCCTT i otoGar3.GL873602 I 1 C 0 s mm10.chr5 76427441 192 + 151834684 ATGCTT-CTGGGGTTACTTCTGGAGGATT-AAATTCTGCATGTCCTACCTTAAAGTTTCTTCAGCC--TTTC---------------------------------TTTTT--------CACAGTATTCAACTGTAACTCAGG-AGAATC------------ACAAAGAAGGGTCTTATTTTTCATGGTTGGTAGATAGTTTGGGTGTGTGAGTACACGGAGACGAAAATCAACCTCAGATT----T-------TG-TTCCTT i mm10.chr5 I 1 I 253 s canFam3.chr13 48014257 191 + 63241923 --TTTT-TAGGGGTTACTTCTTTAGAATAGAAATACTGAACGTTCCATTTTTAAGTTTCTTCTATCTTTATC---------------------------------TTTTT--------TACA-TGTTCAGCTGTAGCACAGA-GGAAAGAGGAATGAATAAATAAATAAATGGTCTACCTATCATGCCCAGCAGAAAATCT---------------------CAAAGGTCGATCAAAA---TGTATTCATTCATG-TTCCTC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4105606 218 - 5279953 CTCCCC-CAGTGGATACTTCTCAAGGGTAGAAATAGTGAATATACCTTTTTTAAGTTGCTACTGTCTTtatatatatatatatatatatatatatatatTTTTTTTTTTT--------TACAGTGTTCAGTTGTAGCAGAGAGGGGATGAG----CGATAAATAAATAGG--TTCTATGTCTCCAAGTCAGCAGAAAATTT---------------------CAAAGATCAGTCAAAAGGTCTTAC-------TG-CTCCTC i dasNov3.JH568349 C 0 C 0 e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=3064878.000000 s hg38.chr4_KI270787v1_alt 77505 269 + 111943 GGATGAA-----TCCTGTTTGTTATTTAAGCTTGTCTGAAAACTCGCTATTGCATGGATTTTTTGTGCTTCCCTTG-TGCCTAACATTTCCTGATTCTCAGTTAAAACTACATTTGCAGCAGAGTGTCCT----GTGTCCAAACCAGACTG---------TGGTTTGCAGCAGTGGTGACCGAGTAATCCCTGTAGAAATCAATCAGTGTGAGTTGATCATCAAGATG---------------GCTCATGTCTGACTGAAGA-------------AGGAGA-----------------------------------------------------------TGCATTTCTTTCCT---GGGGTGAGCAGGGATGCTCAG s panTro5.chr4 119642145 268 - 194502333 GGATGAA-----TCCTGTTTGTTATTTAAGCTTGTCTGAAAACTCGCTATTGCATGGATTTTT-GTGCTTCCCTTG-TGCCTAACATTTCCTGATTCTCAGTTAAAACTACATTTGCAGCAGAGTGTCCT----GTGTCCAAACCAGACTG---------TGGTTTGCAGCAGTGGTGACCGAGTAATCCCTGTAGAAATCAATCAGTGTGAGTTGATCATCAAGATG---------------GCTCATGTCTGACTGAAGA-------------AGGAGA-----------------------------------------------------------TGCATTTCTTTTCT---GGGGTGAGCAGGGATGCTCAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121055581 268 - 195804263 GGATGAA-----TCCTGTTTGTTATTTAAGCTTCTCTGAAAACTCGCTATTGCATGGATTTTT-GTGCTTCCCTTG-TGCCTAACATTTCCTGATTCTCAGTTAAAACTACATTTGCAGCAGAGTGTCCT----GTGTCCAAACCAGACTG---------TGGTTTGCAGCAGTGGTGACCGAGTAATCCCTGTAGAAATCAATCAGTGTGAGTTGATCATCAAGATG---------------GCTCATGTCTGACTGAAGA-------------AGGAGA-----------------------------------------------------------TGCATTTCTTTTCT---GGGGTGAGCAGGGATGCTCAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4486814 268 - 17550833 GGATGAA-----TCCTGTTTGTTATTTAAGCTTGTCTGAAAACTCGCTATTGCATGGATTTTT-GTGCTTCCCTTG-TGCCTAACATTTCCTGATTCTCAGTTAAAACTACATTTGCAGCAGAGTGTCCT----GTGTCCAAACCAGACTG---------TGGTTTGCAGCAGTGGTGACCGAGTAATCCCTGTAGAAATCAATCAGTGTGAGTTGATCATCAAGATG---------------GCTCATGTCTGACTGAAGA-------------AGGAGA-----------------------------------------------------------TGCATTTCTTTTCT---GGGGTGAGCAGGGATGCTCAG i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569359 263 - 190429646 GGATGAA-----TCCTGTTTGTT-----AACTTGTCTGAAAACTCAGTATTGCATGGAGTTTT-GTGCTTCCCTTG-TGCCTAACGTTTCCTGTTTCTCAGTTAAAACTACATTTGCAGCAGAGTGTCCT----GTGTCCAAATGAGACTG---------TGGTTTGCAGCACTGGTGACCAAGTAATCCCTGTAGAAATCAATCAGTGTGAGTCGATCATCAAGATG---------------GCTCATGTCTGACTGAAGA-------------AGGAGA-----------------------------------------------------------TGCATTTCTTTTCT---GGGGTGAGTGGGGATGCTCAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110738544 263 - 189454096 GGATGAA-----TCCTGTTTGTT-----AACTTGTCTGAAAACTCAGTATTGCATGGAGTTTT-GTGCTTCCCTTG-TGCCTAACGTTTCCTGTTTCTCAGTTAAAACTACATTTGCAGCAGAGTGTCCT----GTGTCCAAATGAGACTG---------TGGTTTGCAGCACTGGTGACCAAGTAATCCCTGTAGAAATCAATCAGTGTGAGTCGATCATCAAGATG---------------GCTCATGTCTGACTGAAGA-------------AGGAGA-----------------------------------------------------------TGCATTTCTTTTCT---GGGGTGAGTGGGGATGCTCAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305046 263 + 26754465 GGATGAA-----TCCTGTTTGTT-----AACTTGTCTGAAAACTCAGTATTGCATGGAGTTTT-GTGCTTCCCTTG-TGCCTAACGTTTCCTGTTTCTCAGTTAAAACTACATTTGCAGCAGAGTGTCCT----GTGTCCAAACGAGACTG---------TGGTTTGCAGCACTGGTGACCAAGTAATCCCTGTAGAAATCAATCAGTGTGAGTCGATCATCAAGATG---------------GCTCATGTCTGACTGAAGA-------------AGGAGA-----------------------------------------------------------TGCATTTCTTTTCT---GGGGTGAGTGGGGATGCTCAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4206587 263 - 5137665 GGATGAA-----TCCTGTTTGTT-----AACTTGTCTGAAAACTCAGTATTGCATGGATTTTT-GTGCTTCCCTTG-TGCCTAACGTTTCCTGTTTCTCAGTTAAAACTACATTTGTAGCAGAGTGTCCT----GTGTCCAAACCAGACTG---------TGGTTTGCAGCACTGGTGACCAAGTAATCCCTGTAGAAATCAATCAGTGTGAGTTGATCATCAAGATG---------------ACTCATGTCTGACTGAAGA-------------AGGAGA-----------------------------------------------------------TGCATTTCTTTTCT---GGCGTGAGCGGGGATGCTCAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122916209 263 - 135778131 GGATGAA-----TCCTGTTTGTT-----AACTTGTCTGAAAACTCAGTATTGCATGGAATTTT-GTGCTTCCCTTG-TGCCTAACGTTTCCTGTTTCTCAGTTAAAACTACATTTGCAGCAGAGTGTCCT----GTGTCCAAACCAGACTG---------TGGTTTGCAGCACTGGTGACCAAGTAATCCCTGTAGAAATCAATCAGTGTGAGTTGATCATCAAGATG---------------GCTCATGTCTGACTGAAGA-------------AGGAGA-----------------------------------------------------------TGCATTTCTTTTCT---GGGGTGAGCAGGGATGCTCAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2028279 263 + 2427316 GGATGAA-----TCCTGTTTGTT-----AACTTGTCTGAAAACTCAGTATTGCATGGATTTTT-GTGCTTCCCTTG-TGCCTAACGTTTCCTGTTTCTCAGTTAAAACTACATTTGTAGCAGAGTGTCCT----GTGTCCACACCAGACTG---------TGGTTTGCAGCACTGGTGACCAAGTAATCCCTGTAGAAATCAATCAGTGTGAGTTGATCATCAAGATG---------------GCTCATGTCTGACTGAAGA-------------AGGAGA-----------------------------------------------------------TGCATTTCTTTTCT---GGGGTGAGTGGGGATGCTCAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1323866 263 + 1448899 GGATGAA-----TCCTGTTTGTT-----AACTTGTCTGAAAACTCAGTATTGCATGGATTTTT-GTGCTACCCTTG-TGCCTAACATTTCCTGTTTCTCAGTTAAAACTACATTTGCAGCAGAGTGTCCT----ATGTCCAAGCCAGACTG---------TGGTTTGCAGCACTAGTGACCAAGTAATCCCTGTAGAAATCAATCAGTGTGAGTTGATCATCAAGATG---------------GCTCATGTCTGACTGAAGA-------------AGGAGA-----------------------------------------------------------TGCATTTCTTTTCT---GGGGTGAGCGGGGATGCTCAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032017 268 - 190850796 GGATGAA-----TCCTGTTTGTCATTTAAGCTTGTCTGGAAACTCACTGTTGCATGGATTTTT-GTGCTTCCCTTG-TGCCTAACATTTCCTGTTTCTCAGGTAAAACTACATTTGCAGCAGAATGTCCT----GTCTTCAAACCAGACTG---------TGGTTTGCAGCACTGGTGACTAAGTGATCCTTGCAGAAATCAGTCAGTGTGAGTTAATCATCAAGATG---------------GCTCATGTCTGACTGAAGA-------------AGGAGA-----------------------------------------------------------TGCATTTCTTTTCT---GGGGTGAGCGGGGATGCTCAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192099 268 - 15139346 GGATGAA-----TCCTGTTTGTCATTTATGCTTGTCGTGAAACTGACTATTGCATGGATTATT-GTGCTTCCCTTG-TGCCTAACATTTCCTGTTTCTCAGGTAAAACTACGTTTGCAGCAGAATGTCCT----GTCTTCAAACCAGACTG---------TGGTTTGCAGCACTGGTGACCAAGTGATCCTTGCAGAAATCAATCAGTGTGAGTTAATCATCAAGACG---------------GCTCATGTCTGACCGAAGA-------------AGGAGA-----------------------------------------------------------TGTATTTCTTTTCT---GGGGTGAGTGGGGATGCTCAG i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9393821 267 - 11631747 GGATGAA-----TCCTGTTTGTCATTTAAGCTTGTCTGGAAACTCACTATTACATGGATTTTT-GTGCTTCCCTTG-TGCCTAACATTTCCTGTTTCTCAGGTAAAACTACATTTGCAGCAGAATGTCCT----GTCTTCAAACCAGACTA---------TGGTTTGCAGCACTGGTGACCAAGTGATCCTTGTAGAAATCAATCAGTGCGAGTTAATCATCAAGATG---------------GCTCATGTCTGACTGAAGA-------------AGGAGA-----------------------------------------------------------TGCATTCCTTTTCT---GGGGTGAGT-GGGATGCTCAG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1792402 258 + 3286835 GGATGAA---------GGTTGTCATTTAAGTGTGTCTTAAAACTCACTATTGCACTGATCTGT-GTATTTCCATAG-TGCCTTACATTTCTCGTTCTTCAAGTAAAACTACATTTGCAGCAGGGTGTCCT----------AAATTCGACTG---------TGGTTTGCAGAATTGGTGACCTAGTGATCTTCGTAGAAATCAATCAGAGTGAGTTGAGCATCAAGGTG---------------GCTCATGTTTGCCTTGAAA-------------AGGAGA-----------------------------------------------------------TGCATTTCTTTTCT---GGGGTGAGCAGGGATGCCCAG i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1882427 258 + 4188776 GGATGAA---------GGTCGTCACTTAAGCATGTCTTAAAACTCACTATTGCACTGATCTGT-CTATTTCCATAG-TGCCTTACATTTCTCGTTCTTCAAGTAAAACTACATTTGCAGCAGGGTGTCCT----------AAACTAGACTG---------TGGTTTGCAGAATTGGTGACCTAGTGATCTTCGTAGAAATCAATCAGTGTGAGTTGTTCATCAAGGTG---------------GCTCACGTTTGCCTTGAGA-------------AGGAGA-----------------------------------------------------------TGTATTTCTTTCCT---GGGGTAAGCAGGGATGCCCAG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8626870 258 + 8790067 GTATGAA---------GCCTGTCATTTAAGCTTATCTTAAAACTCACTATTGCACTGATTTCT-GTATTTCTGTAG-TGCCTTAAATTTCCTTTTCTTTAATTAAAACTACATTTGCATGAACGTGTTCA----------AAACTAGACAG---------CAGTTTGCAGAACTGGTGATCTAGTGATTCTCATAGAAACCAATCAGTGTGAGATGACCATGAAGGTG---------------GCTCATGTTTGCCCTAAGA-------------AGGAGA-----------------------------------------------------------TGCATTTCTTTTTT---GGGGTGAGCAGAGATGCCTGG i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48014448 351 + 63241923 ---AGAACATGTTCCTGTTTGTCATTTAAGCTTGTCTGAAAATTCACTATTATACTGACTAGT-GTTCTTCCGTAG-CTCCTTACGTTTCCTGTTATTCAAGTAAAACTGCATTTGCAGCAGGGTGTCCC----GTATCCAAACTAGATTGCTTGCAATCTAGTTTGCAGAATTGGTGACCTAGAGATCTTTGTGAAAATCAATCAGCAGGAGTCAGCATTCAAAAAG---------------ATTATTTTCTGATGGGAAACTAACTCCAGGTTAGGAGAAGTGCCCAAAAGAGGAAGATAAGGAGGgggatccctgggtggcgcagtggtttggcacctgcctttggcccag---ggcgtgatcctggagacccgg i canFam3.chr13 C 0 I 107 s dasNov3.JH568349 4105824 290 - 5279953 GGATAAA-----TCCTATTTGTCATTTAAGCTTGTCTAAAAACTCACTATTTTACTGATTCAC-ATACTTCCATAGTTTTTTTACACTTCCTGTTTTTCAAGTAAAAATGCATTTGCAGCAGTGTGTCCTAACCACATCTAAACTGGATTA---------TGGTTTGCAGAACTGGTGACCTAATGATCCTTGTGGAAATCAGTCAGCAC-AGTTGATAATCAAGGGGTTCATTTTTTGTTTTGTTTGTTTTTTTCTGAAGA-------------AGGAGA-----------------------------------------------------------GGTCTTTTTTTTCCTGAGGGTTGAGCACAGGTGCCCAG i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76427633 253 + 151834684 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=544219.000000 s hg38.chr4_KI270787v1_alt 77774 44 + 111943 AAGAGGGATGAC-AGGAGATGAATGGGATGGGATGGAGTCTGTGC s panTro5.chr4 119642413 44 - 194502333 AAGAGGGATGAC-AGGAGATGAATGGGATGGGATGGAGTCTGTGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121055849 44 - 195804263 AAGAGGGATGAC-AGGAGATGAATGGGATGGGATGGAGTCTGTGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487082 44 - 17550833 AAGAGGGATGAC-AGGAGATGAATGGGATGGGATGGAGTCTGTGC i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569622 44 - 190429646 AAGAGGGACGAC-AGGAGATGAATGGGATGGGATGGAGTTTGTGC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110738807 44 - 189454096 AAGAGGGACGAC-AGGAGATGAATGGGATGGGATGGAGTTTGTGC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305309 44 + 26754465 AAGAGGGACGAC-AGGAGATGAATGGGATGGGATGGAGTTTGTGC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4206850 44 - 5137665 AAGAGGGACGAC-AGGAGATGAATGGGATGGGATGGAGTTTGCGC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122916472 44 - 135778131 AAGAGGGACGAC-AGGAGATGAATAGGATGGGATGGAGTTTGTGC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2028542 44 + 2427316 AAGAGGGACGAC-AGGAGATGAATGGGATGGGATGGAGTTTGTGC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324129 44 + 1448899 AAGAGGAACGAC-AGGAGATGAATGGGATGGGATGGAGTTTGTGC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032285 44 - 190850796 AAGAGGGACAAC-AGGAGATGAATGGGATGGGATGGAGTCTGTGC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192367 44 - 15139346 AAGAGGGACAAC-AGGAGATGAATGGGATGGGATGGAGTCTGTGC i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9394088 44 - 11631747 AAGAGGGACAAC-AGGAGATGAATGGGATAGGATGGAGTCTGTGC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1792660 40 + 3286835 AAGAGGGACAACAAGGAGATGAATGGGATCAGATGGAGTC----- i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1882685 40 + 4188776 AAGAGGGATGACAAGGAGATGAATGGGATCAGATGGAGTC----- i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8627128 45 + 8790067 AAGAGGGATGACAAAGAGATGAATGGGATTGGATGGAGTCTGTGC i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48014906 44 + 63241923 aaGAGGAAGACA-AGGAGATGAATAGAATGGGATGGAATCTGCCC i canFam3.chr13 I 107 C 0 s dasNov3.JH568349 4106114 44 - 5279953 AAAAGGAAGGCA-AAGGGATGAATGGGATGGAATGGGATGGAACC i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76427633 253 + 151834684 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=597689.000000 s hg38.chr4_KI270787v1_alt 77818 45 + 111943 CCTTCACAG-TCCAAGGCTCTGGTTCTGAATCATAATGGAGAGAAG s panTro5.chr4 119642457 45 - 194502333 CCTTCACAG-TCCAAGGCTCTGGTTCTGAATCATAATGGAGAGAAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121055893 45 - 195804263 CCTTCACAG-TCCAAGGCTCTGGTTCTGAATCATAATGGAGAGAAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487126 45 - 17550833 CCTTCACAG-TCCAAGGCTCTGGTTCTGAATCATAATGGAGAGAAG i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569666 45 - 190429646 CCTTCACAG-TCCAAGGCTCTGGTTCTGAATCATAATGGAGAGAAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110738851 45 - 189454096 CCTTCACAG-TCCAAGGCTCTGGTTCTGAATCATAATGGAGAGAAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305353 45 + 26754465 CCTTCACAG-TCCAAGGCTCTGGTTCTGAATCATAATGGAGAGAAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4206894 45 - 5137665 CCTTCACAG-TCCAAGGCTCTGGTTCTGAATCATAATGGAGAGAAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122916516 45 - 135778131 CCTTCACAG-TCCAAGGCTCTGGTTCTGAATCATAATGGAGAGAAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2028586 45 + 2427316 CCTTCACAG-TCCAAGGCTCTGGTTCTGAATCATAATGGAGAGAAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324173 45 + 1448899 CCTTCACAG-TCCAAGGCTCTGGTTCTGAATCATAATGGAGAGAAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032329 45 - 190850796 CTTTCACAG-TCCAAGGCTCTGGTTCTAAATCATAATGGAGAGAAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192411 45 - 15139346 CCCTCACAG-TCCAAGACTCTGGTTCTGAATCATAATGGAGAGAAG i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9394132 45 - 11631747 CCTTCAGAA-TCCAAGGCTCTGGTCCTGAATCATAATGGAGAGAAG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1792700 34 + 3286835 ------------CAAGGCTCTGGTTTTGAATCATGATGGAGAGAAT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1882725 34 + 4188776 ------------GAAGGCTTCAGTTTTGAATCATGATGGAGAGAAG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8627173 45 + 8790067 CCTTCACAG-GGTAAGGGTCTAGTTTTGAGTCGAGATGGGAAGAAG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76427886 46 + 151834684 tctccccagccccAAGGTTCTGGTCTTTGATCATGATGGAGAGAAG i mm10.chr5 I 253 I 332 s canFam3.chr13 48014950 45 + 63241923 CCTTCATAG-TCCACAGCTCTGGTTTCAAATTGTGATGAAGAAAAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4106158 45 - 5279953 CCTTTGCAG-CCTGAGGCTCTGGCTTTGAATCATGACGGAGAGAAG i dasNov3.JH568349 C 0 C 0 e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=426251.000000 s hg38.chr4_KI270787v1_alt 77863 32 + 111943 GTTTAACCATATAACTGAAGGGCATGG---AGAAG s panTro5.chr4 119642502 32 - 194502333 GTTTAACCATATAACTGAAGGGCATGG---AGAAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121055938 32 - 195804263 GTTTAACCATATAACTGAAGGGCATGG---AGAAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487171 35 - 17550833 GTTTAACCATATAACTGAAGGGCATGGAGAAGAAG i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569711 35 - 190429646 GTTTAACCATATAACTGAAGGGCATGGAGAAGAAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110738896 35 - 189454096 GTTTAACCATATAACTGAAGGGCATGGAGAAGAAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305398 35 + 26754465 GTTTAACCATATAACTGAAGGGCATGGAGAAGAAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4206939 35 - 5137665 GTTTAACCATATAACTGAAGGGCATGGAGAAGAAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122916561 35 - 135778131 GTTTAACCATATAACTGAAGGGCATGGAGAAGAAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2028631 35 + 2427316 GTTTAACCATATAACTGAAGGGCATGGAGAAGAAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324218 35 + 1448899 GTTTAACCATATAACTGAAGGGCATGGAGAAGAAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032374 35 - 190850796 GCTTAACTATATGACTGAAGGGTATGGAGAGGAAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192456 35 - 15139346 GTCTAACTATATGACTGAAGGGCATGGAGAAGCAG i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9394177 35 - 11631747 GTTTAACCATATGACTGCAGGGTTTGGAGAAGAAG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1792734 32 + 3286835 GTTTAACCACGAAACTGAAGGGCATGGAGAAG--- i micMur3.chrUn_NW_017968520v1 C 0 I 25 s proCoq1.NW_012140747v1 1882759 32 + 4188776 GTTTAACCGCAAAACTGAAGGGCATGGAGAAG--- i proCoq1.NW_012140747v1 C 0 I 24 s otoGar3.GL873602 8627218 32 + 8790067 ATTTTACCACACAATTGGAGGGCATAGGGAAG--- i otoGar3.GL873602 C 0 I 3 s mm10.chr5 76428264 32 + 151834684 GCTCAACCATACAACTGGAGGGCATAGAGAAG--- i mm10.chr5 I 332 C 0 s canFam3.chr13 48014995 35 + 63241923 GTTTAACCATGAACCTGTAGGGCAGGGAGAGGAAG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4106203 35 - 5279953 GTTTAACTATGAAACTGAAGGACATGGAAGAGAAG i dasNov3.JH568349 C 0 C 0 e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=52748.000000 s hg38.chr4_KI270787v1_alt 77895 5 + 111943 TCTAC s panTro5.chr4 119642534 5 - 194502333 TCTAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121055970 5 - 195804263 TCTAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487206 5 - 17550833 CCTAC i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569746 5 - 190429646 TCTAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110738931 5 - 189454096 TCTAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305433 5 + 26754465 TCTAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4206974 5 - 5137665 TCTAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122916596 5 - 135778131 TCTAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2028666 5 + 2427316 TCTAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324253 5 + 1448899 TCTAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032409 5 - 190850796 CCTAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192491 5 - 15139346 CCTAC i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9394212 5 - 11631747 CCTAC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8627253 5 + 8790067 TCCAC i otoGar3.GL873602 I 3 C 0 s mm10.chr5 76428296 5 + 151834684 CCCAC i mm10.chr5 C 0 C 0 s canFam3.chr13 48015030 5 + 63241923 CCCTC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4106238 5 - 5279953 CCCAC i dasNov3.JH568349 C 0 I 527 e proCoq1.NW_012140747v1 1882791 24 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792766 25 + 3286835 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=169113.000000 s hg38.chr4_KI270787v1_alt 77900 17 + 111943 TCTA-TCCTGCAACAGAC s panTro5.chr4 119642539 17 - 194502333 TCTA-TCCCGCAACAGAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121055975 17 - 195804263 TCTA-TCCCGCAACAGAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487211 17 - 17550833 TCTA-TCCCACAACAGAC i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569751 17 - 190429646 TGTA-TCCCACAACAGAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110738936 17 - 189454096 TGTA-TCCCACAACAGAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305438 17 + 26754465 TGTA-TCCCACAACAGAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4206979 17 - 5137665 TGTA-TCCCACGACAGAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122916601 17 - 135778131 TGTA-TCCCACAACAGAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2028671 17 + 2427316 TGTA-TCCCACAACAGAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324258 17 + 1448899 TGTA-TCCCACAAGAGAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032414 17 - 190850796 TCCA-TCCCACAACAGAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192496 17 - 15139346 TCCA-TCCCACAACAGAC i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9394217 17 - 11631747 TCCA-TCCCGCAACAGAC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8627258 17 + 8790067 CACA-CTCCACAACAGAC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76428301 18 + 151834684 CCTACCCCCACAGCAGAT i mm10.chr5 C 0 C 0 s canFam3.chr13 48015035 17 + 63241923 CCCA-TCCCACAGTGGAC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4106770 17 - 5279953 TCCA-CTCCACAACAGAC i dasNov3.JH568349 I 527 C 0 e proCoq1.NW_012140747v1 1882791 24 + 4188776 I e micMur3.chrUn_NW_017968520v1 1792766 25 + 3286835 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=12637.000000 s hg38.chr4_KI270787v1_alt 77917 1 + 111943 C s panTro5.chr4 119642556 1 - 194502333 C i panTro5.chr4 C 0 C 0 s panPan2.chr4 121055992 1 - 195804263 C i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487228 1 - 17550833 C i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569768 1 - 190429646 C i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110738953 1 - 189454096 C i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305455 1 + 26754465 C i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4206996 1 - 5137665 C i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122916618 1 - 135778131 C i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2028688 1 + 2427316 C i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324275 1 + 1448899 C i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032431 1 - 190850796 C i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192513 1 - 15139346 C i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9394234 1 - 11631747 C i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1882815 1 + 4188776 C i proCoq1.NW_012140747v1 I 24 C 0 s otoGar3.GL873602 8627275 1 + 8790067 C i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76428319 1 + 151834684 T i mm10.chr5 C 0 C 0 s canFam3.chr13 48015052 1 + 63241923 T i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4106787 1 - 5279953 C i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1792766 25 + 3286835 I e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=1769549.000000 s hg38.chr4_KI270787v1_alt 77918 153 + 111943 AAAAGACCACCATGTAGAACTGACATTGTTCCCGGAGGCATTCTCCTGGCAGCCAAAGGAGCTTAG---CGAGGAGACGAGCAG-AAA-TTTTGAGTGGACAAGCTTCTAAATACAAGCAAACA--CTACCTTAGGGATGCCTGAAATAAGAAGGGAGAT s panTro5.chr4 119642557 153 - 194502333 AAAAGACCACCATGTAGAACTGACATTGTTCCCGGAGGCATTCTCCTGGCAGCCAAAGGAGCTTAG---CGAGGAGACGAGCAG-AAA-TTTTGAGTGGACAAGCTTCTAAATACAAGCAAACA--CTACCTTAGGGATGCCTGAAATAAGAAGGGAGAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121055993 153 - 195804263 AAAAGACCACCATGTAGAACTGACATTGTTCCCGGAGGCATTCTCCTGGCAGCCAAAGGAGCTTAG---CGAGGAGACGAGCAG-AAA-TTTTGAGTGGACAAGCTTCTAAATACAAGCAAACA--CTACCTTAGGGATGCCTGAAATAAGAAGGGAGAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487229 155 - 17550833 AAAAGACCACCATGTAGAACTGACATTGTTCCCGGAGGCATTCTCCTGGCAGCCAAAGGAGCTTAG---CGAGGAGACGAGCAG-AAA-TTTTGAGTGGACAAGCTTCTAAATACAAGCAAACATCCTACCTTAGGGATGCCTGAAATAAGAAGGGAGAT i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569769 154 - 190429646 AAAAGACCACAGTGTAGAACTGACACTGTTCCTGGAGGCATTCTCCCAGCAGCCAAAGGAACTTAG--AAGGAGAAAAGAGCAG-AAA-TTTTGAGTGGACAAGTTTCTAAATACAAGCAAACA--CTACCTTAGGGATGCCTGAAATAAGAAGGGAGAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110738954 154 - 189454096 AAAAGACCACAGTGTAGAACTGACACTGTTCCTGGAGGCATTCTCCCAGCAGCCAAAGGAACTTAG--AAGGAGAAAAGAGCAG-AAA-TTTTGAGTGGACAAGTTTCTAAATACAAGCAAACA--CTACCTTAGGGATGCCTGAAATAAGAAGGGAGAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305456 154 + 26754465 AAAACACCACAGTGTAGAACTGACACTGTTCCTGGAGGCATTCTCCCAGCAGCCAAAGGAACTTAG--AAGGAGAAAAGAGCAG-AAA-TTTTGAGTGGACAAGTTTCTAAATACAAGCAAACA--CTACCTTAGGGATGCCTGAAATAAGAAGGGAGAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4206997 154 - 5137665 AAAAGACCACAGTGTAGAACTGACACTGTTCCTGGAGGCATTCTCCCAGCAGCCAAAGGAACTTAG--AAGGAGAAAAGAGCAG-AAA-TTTTGAGTGGACAAGTTTCTAAATACAAGCAAACA--CTACCTTAGGGATGCCTGAAATAAGAAGGGAGAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122916619 154 - 135778131 AAAAGATCACAGTGTAGAACTGACACTGTTCCTGGAGGCATTCTCCCAGCAGCCAAAGGAACTTAG--AAGGAGAAAAGAGCAG-AAA-TTTTGAGTGGACAAGTTTCTAAATACAAGCAAACA--CTACCTTAGGGATGCCTGAAATAAGAAGGGAGAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2028689 154 + 2427316 AAAAGACCACAGTGTAGAACTGACACTGTTCCTGGAGGCATTCTCCCAGCAGCCAAAGGAACTTAG--AAGGAGAAAAGAGCAG-AAA-TTTTGAGTGGACAAGTTTCTAAATACAAGCAAACA--CTACCTTAGGGATGCCTGAAATAAGAAGGGAGAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324276 155 + 1448899 AAAAGACCACAGTGTAGAACTGACACCGTTCCTGGAGGCATTCTCCCAGCAGCCAAAGGAACTTAGC-AAGGAGAAAAGAGCAG-AAA-TTTTGAGTGGACAAGTTTCTAAATACAAGCAAACA--CTACCTTAGGGATGCCTGAAATAAGAAGGGAGAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032432 153 - 190850796 AAAAGACCACTGTGTAGGACTGACACTG--CCCGGAGGCATTCTCCTGGCAG-CAAAGGAGCTTAGT-GAGGAGGCAAGAGCAG-AAAATTTTGAGTGGACAAGTTTCTAAATACAATCAAACA--CTACCTTAGGGATGCCTGAAATAAGAAGGGAGTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192514 154 - 15139346 AAAAGACCACAGTGTAGGACTGACACCA--CCCAGAGGCATTTTCCCAGCAGCCAAGGGAGCTTAGC-GAGGAGGCAAGAGCAG-AAAGTTTTGAGTGGACAAGTTTCTAAATACAATCAAACA--CTACCTTGGGGATGCCTGAAATAAGAAGGGAGTT i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9394235 154 - 11631747 AAAAGATCACAGTGTAGAACTGACACTG--CCCGGAAGCATTCTCCCAGCAGCCAAAGGAGCTTAGT-GAGGAGGCAAGAGCAG-AAAATTTTGAGTGGACAGATTTCTAAATACAATCAAACA--CTACCTTAGGGATGCCTGAAATAAGAAGGGAGTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1792791 156 + 3286835 AAAAGGCCACAGTGTAGAATTGACACCATGCCCAGAGGCATTCTTGGGGCAGCCAAAGAAGCTCAGT-GAGGAGGCAAGAGCAGAAAA-AATTGAGTGGACAAGTTTCTAAGCACAAGCAAATA--CCACTTTGGGGGTGCCTGAAATAAGGAGGGAGAG i micMur3.chrUn_NW_017968520v1 I 25 C 0 s proCoq1.NW_012140747v1 1882816 147 + 4188776 AAAAGGC--------AGAATTGACACTGTGCCTAGAGGCTTTCTCGGGGCAGCCAAAGGAGCTCAGT-GAGGAAGCAAGAGTAG-AAA-AATTGAGTGGACAAGTTTCTAAACACAAGCAAATA--CCAGTTTGGGGATGCCTGAAATAAGGAGGGAGAT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8627276 154 + 8790067 -AAAGACCACAATGTAGATGTGACACTGTGACCAGAGGTATTGTTGGGGCATCCAAAGGAACTTAGT-G-GGAGTCCAGAGCAGAAAG-ATTTGAGTGGACGAGTTTCTAAACACAAACAAACA--ACTTTTTGGGCATGCCTGAAATAAGAAAGGAGAT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76428320 152 + 151834684 AAAATACCACAGTGTGGAGTTGACACTG--CCAAGAATCGTCCTCAGGGAGGCCAAAAGACCTGGGTGACAGGAAGGAGTGGGG-AAA-AAATGAGTGGATGTGTTTCTAACCACAAGTAAGTA--ACTCC-TGAGGACATCAG-GATAATGAGGAAGAT i mm10.chr5 C 0 C 0 s canFam3.chr13 48015053 151 + 63241923 GAGAGACCATGGTGTGGAA-TGGTTCTGTGCCCAGCAATGTT-TCAGAGCAGCAGAAGGAGCTTGGT-GAGGAAGCAAGAG--A-AAA-ATTTGAGTGGATAAATTTCTTAACACAAGCAGACA--CCACCTTGGGGATGCCTGAAGTAAGGAAAAACAT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4106788 152 - 5279953 AAAAGACCACAGCGTAGAATTGACCCTGTGCCTAGAGACATTCTCAAGGCAGCAGAAGGACTCCAGT-GAGGATGCAAGAACTG-AAGAATTTGAGT--ATAGAGTCCTGAACACCAGCAGA----CCGCCTTGGGGATGGCTGAAATAAGGAGGGAGAT i dasNov3.JH568349 C 0 C 0 e cebCap1.NW_016107439v1 6977121 4 - 7304997 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=212230.000000 s hg38.chr4_KI270787v1_alt 78071 14 + 111943 TCCAGGGAGGGAAT s panTro5.chr4 119642710 14 - 194502333 TCCAGGGAGGGAAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121056146 14 - 195804263 TCCAGGGAGGGAAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487384 14 - 17550833 TCCAGGGAGGGAAT i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569923 14 - 190429646 TCTAGGGAGGGAAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110739108 14 - 189454096 TCTAGGGAGGGAAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305610 14 + 26754465 TCTAGGGAGGGAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4207151 14 - 5137665 TCTAGGGAGGGAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122916773 14 - 135778131 TCTAGGGAGGGAAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2028843 14 + 2427316 TCTAGGGAGGGAAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324431 14 + 1448899 TCTAGGGAGGGAAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032585 14 - 190850796 TCCACGGAGGGAAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192668 14 - 15139346 TCCACGGAGGGAAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6977125 14 - 7304997 tccacggagggaat i cebCap1.NW_016107439v1 I 4 C 0 s aotNan1.NW_018493494v1 9394389 14 - 11631747 TCCAGGGAGGGAAT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1792947 14 + 3286835 TGCAGGGAGGGAAT i micMur3.chrUn_NW_017968520v1 C 0 I 4 s proCoq1.NW_012140747v1 1882963 14 + 4188776 TGCAGGGAGGGAAT i proCoq1.NW_012140747v1 C 0 I 595 s otoGar3.GL873602 8627430 14 + 8790067 TCCAGGGAGGAAAT i otoGar3.GL873602 C 0 I 4 s mm10.chr5 76428472 14 + 151834684 CCCAGAGAATAAAT i mm10.chr5 C 0 C 0 s canFam3.chr13 48015204 14 + 63241923 TTCAGAGAAGGGAT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4106940 14 - 5279953 TTCATGAAGGGGAT i dasNov3.JH568349 C 0 C 0 e nomLeu3.chr9 69356355 1512 - 118206036 I a score=10453.000000 s hg38.chr4_KI270787v1_alt 78085 1 + 111943 G s panTro5.chr4 119642724 1 - 194502333 G i panTro5.chr4 C 0 C 0 s panPan2.chr4 121056160 1 - 195804263 G i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487398 1 - 17550833 G i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569937 1 - 190429646 G i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110739122 1 - 189454096 G i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305624 1 + 26754465 G i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4207165 1 - 5137665 G i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122916787 1 - 135778131 G i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2028857 1 + 2427316 G i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324445 1 + 1448899 G i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032599 1 - 190850796 G i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192682 1 - 15139346 G i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6977139 1 - 7304997 g i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9394403 1 - 11631747 G i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1792965 1 + 3286835 T i micMur3.chrUn_NW_017968520v1 I 4 C 0 s otoGar3.GL873602 8627448 1 + 8790067 G i otoGar3.GL873602 I 4 C 0 s mm10.chr5 76428486 1 + 151834684 G i mm10.chr5 C 0 I 201 s canFam3.chr13 48015218 1 + 63241923 A i canFam3.chr13 C 0 I 4 s dasNov3.JH568349 4106954 1 - 5279953 A i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1882977 595 + 4188776 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=160899.000000 s hg38.chr4_KI270787v1_alt 78086 15 + 111943 ----GGGAGACAACAGCTA s panTro5.chr4 119642725 15 - 194502333 ----GGGAGACAACAGCTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121056161 15 - 195804263 ----GGGAGACAACAGCTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487399 15 - 17550833 ----GGGAGACAACAGCTA i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569938 15 - 190429646 ----GGGAGACAACAGCTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110739123 15 - 189454096 ----GGGAGACAACAGCTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305625 15 + 26754465 ----GGGAGACAACAGCTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4207166 15 - 5137665 ----GGGAGACAACAGCTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122916788 15 - 135778131 ----GGGAGACAACAGCTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2028858 15 + 2427316 ----GGGAGACAACAGCTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324446 15 + 1448899 ----GGGAGACAATAGCTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032600 15 - 190850796 ----GGGAGATGAGAGCTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192683 15 - 15139346 ----GGGAGACGAGAGCTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6977140 15 - 7304997 ----gggagacgagagcta i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9394404 15 - 11631747 ----GGGAGACAAGAGCTA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1792966 15 + 3286835 ----GGCGGCCAAATGCTA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8627449 15 + 8790067 ----GGCAGCCAGGTGCTA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48015223 15 + 63241923 ----GGAGGCCAAGATTTC i canFam3.chr13 I 4 C 0 s dasNov3.JH568349 4106955 19 - 5279953 AAGTGGTGACCAAGAGCTA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1882977 595 + 4188776 I e mm10.chr5 76428487 201 + 151834684 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=1600264.000000 s hg38.chr4_KI270787v1_alt 78101 174 + 111943 CCATGGTTTGGGCATCAATGTTAACACAGCTGCATCTGTGGTGA-AGGCATGAGGGAGGCTATGTGGGG--TT--------CA------CTATCAAACAGGGTTATCAGGAATTAGTGAGCCTGTCCAAGAGTATGGGTCCATATCTCTTTTC--TTGCTGGGAGATTCCATTACATA----------------------------------------------------------------------------------------------------------------------------------------TTCCTCATGTCCATA s panTro5.chr4 119642740 174 - 194502333 CCATGGTTTGGGCATCAATGTTAACACAGCTGCATCTGTAGTGA-AGGCATGAGGGAGGCTATGTGGGG--TT--------CA------CTATCAAACAGGGTTATCAGGAATTAGTTAGCCTGTCCAAGAGTATGGGTCCATATCTCTTTCC--TTGCTGGGAGATTCCATTACATA----------------------------------------------------------------------------------------------------------------------------------------TTCCTCATGTCCATA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121056176 174 - 195804263 CCATGGTTTGGGCATCAATGTTAACACAGCTGCATCTGTAGTGA-AGGCATGAGGGAGGCTATGTGGGG--TT--------CA------CTATCAAACAGGGTTATCAGGAATTAGTTAGCCTGTCCAAGAGTATGGGTCCATATCTCTTTCC--TTGCTGGGAGATTCCATTACATA----------------------------------------------------------------------------------------------------------------------------------------TTCCTCATGTCCATA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487414 174 - 17550833 CCATGGTTTGGGCATCAATGTTAATACAGCTGCATCTGTAGTGA-AGGCATGAGGGAGGCTATGTGGGG--TT--------CA------CTATCAAACAAGGTTATCAGGAATTAGTTAGCCTGTCCAAGAGTATGGGTCCATATCTCTTTTC--TTGCTGGGAGATTCCATTACATA----------------------------------------------------------------------------------------------------------------------------------------TTCCTCATGTCCATA i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111569953 174 - 190429646 CGATAGTTTGGTCATCAATGTCAATACAGCTGCGTCTGTAGTCA-AGGCATGAGGGAGGCTATGTGGGG--TT--------CA------CTATCAAACAAGGTTATCAGGAATTAGTTAGCCTGTCCAAGAGTGTGGGTCCATATTCCCTTTC--TTGCTGGGAGATTCCATTACGTA----------------------------------------------------------------------------------------------------------------------------------------TTACTCATTTCCATA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110739138 174 - 189454096 CGATAGTTTGGTCATCAATGTCAATACAGCTGCGTCTGTAGTCA-AGGCATGAGGGAGGCTATGTGGGG--TT--------CA------CTATCAAACAAGGTTATCAGGAATTAGTTAGCCTGTCCAAGAGTGTGGGTCCATATTCCCTTTC--TTGCTGGGAGATTCCATTACGTA----------------------------------------------------------------------------------------------------------------------------------------TTACTCATTTCCATA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305640 174 + 26754465 CGATAGTTTGGTCATCAATGTCAATACAGCTGCGTCTGTAGTCA-AGGCATGAGGGAGGCTATGTGGGG--TT--------CA------CTATCAAACAAGGTTATCAGGAATTAGTTAGCCTGTCCAAGAGTGTGGGTCCATATTCCCTTTC--TTGCTGGGAGATTCCATTACGTA----------------------------------------------------------------------------------------------------------------------------------------TTACTCATTTCCATA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4207181 174 - 5137665 CGATAGTTTGGTCATCAATGTCAATACAGCTGCGTCTGTAGTCA-AGGCATGAGGGAGGCTATGTGGGG--TT--------CA------CTATCAAACAAGGTTATCAGGAATTAGTTAGCCTGTCCAAGAGTGTGGGTCCATATTCCCTTTC--TTGCTGGGAGATTCCATTACGTA----------------------------------------------------------------------------------------------------------------------------------------TTACTCATTTCCATA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122916803 174 - 135778131 CGATAGTTTGCTCTTCAATGTCAATACAGCTGCGTCTGTAGTCA-AGGCATGAGGGAGGCTATGTGGGG--TT--------CA------CTATCAAACAAGGTTATCAGGAATTAGTTAGCCTGTCCAAGAGTGTGGGTCCATATTCCCTTTC--TTGCTGGGAGATTCCATTACGTA----------------------------------------------------------------------------------------------------------------------------------------TTACTCATTTCCATA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2028873 174 + 2427316 CGATAGTTTGGTCATCAATGTCAATACAGCTGCGTCTGTAGTCA-AGGCATGAGGGAGGCTATGTGGGG--TT--------CA------CTATCAAACAAGGTTATCAGGAATTAGTTAGCCTGTCCAAGAGTGTGGGTCCATATTCCCTTTC--TTGCTGGGAGATTCCATTACGTA----------------------------------------------------------------------------------------------------------------------------------------TTGCTCATTTCCGTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324461 174 + 1448899 CGATAGTTTGGTCATCAATGTTAATACAGCTGCATCTGTAGTCA-AGGCATGAGGGAGGCTATGTGGGG--TT--------CA------CTATCAAACAAGGTTATCAGGAATTAGTTAGCCTGTCCAAGAGTATGGGTCCATATTCCTTTTC--TTGCTGGGAGATTCCATTACATA----------------------------------------------------------------------------------------------------------------------------------------TTCCTCATTTCCATA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032615 161 - 190850796 CCATGGTTTGGGCATCAATGTTAATATTGCTATGTCTGTAGCCA-AGGCATGCAGGAGGCTATATGGGG--TT--------CA------CTACCAAGCAAGATTATCAGGTATTCATTAGCCTGTCCAAGAGTAT-GGTCCATATCTCCTTTC--TTGCTAGGAGATTC----------------------------------------------------------------------------------------------------------------------------------------------------CTTATTTTCATA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192698 161 - 15139346 CCATGGTTTGGGCGTCAATGTTAATACAGCTGTGTCTGTAGCCA-AGGCATGCAGGAGGCTATATGGGG--TT--------CA------CTACCAAGCAAGGTTATCAGGTATTCGTTAGCCTGTTCAAGAGTAT-GGTCCATATCTCTTTTC--TTGCTGGGAGATTC----------------------------------------------------------------------------------------------------------------------------------------------------CTTATTTCCATA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6977155 161 - 7304997 ccatggtttggGCATCAATGTTAATACAGCTGTGTCTGTAGCCA-AGGCATGCAGGAGGCTATATGGGG--TT--------CA------CTACCAAGCAAGGTTATCAGGTATTCGTTAGCCCGTCCAAGAGTAT-GGTCCATATCTCCTTTC--TGGCTGGGAGATTC----------------------------------------------------------------------------------------------------------------------------------------------------CTTATTTCCATA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9394419 161 - 11631747 CCATGGTTTGGGCATCAATGTTAATACAGCTGCGTCTGTAGCCA-AGGCATGGAGGGGGTTCTATGGGG--TT--------CA------CTATCAAGCAAAGTTATCAGGTATTTGTTAGCCTGTCCAAGAGTAT-GGTCCATATCTCCTTTC--TTGCTGGGAGATTC----------------------------------------------------------------------------------------------------------------------------------------------------CTTATTTCCATA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1792981 180 + 3286835 CCATGGTTTGGGCATCGATGTTAACAGAGCTGCATTTATAGCCC-AGGCCTGGAGGAGGCTAAATGGGG--CTCATGTGTACA------CTATCAAACAAGGT-ATCAAGAGTTAGTCAGCCTGTCCAAGAGTATGGGTCCATAGCTCCTTCT--CTGCT-GGGGGTTCCATTGCATA----------------------------------------------------------------------------------------------------------------------------------------TTCCTTATTTCCATA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8627464 170 + 8790067 CCATGGTTTG-----CCATGTTATGAGAGGTGCATTTACAGCTA-AGGCCTGG-GGCTGCTCTCTGGTG--CTCACCTATACA------TTACCAAAAAGGGT--TTAAGAGTTTGTCAGCCTGTCCAAGAGTATGGG-CCATATCTCCCTGT--CTGC---AGGGTGCCACTGCATA----------------------------------------------------------------------------------------------------------------------------------------GTCTCTAGTTCCATA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76428688 174 + 151834684 CCATAGTTCGGATACCAATATGAGTCAAGCTG-ATTTGTCACCAGAGGCCTGAGCTGGGCCACGTGAGGCCTT--------CACAGAGTCTTTCAAATGTGGT-ATCAG---TTCTTCAGCCTGCCCAAGAGCATGATTCTACACCTCTTCTTGGTCCTTGGAAAACTATGCT----------------------------------------------------------------------------------------------------------------------------------------------TTTCTATGTCCATA i mm10.chr5 I 201 I 299 s canFam3.chr13 48015238 81 + 63241923 CCATGATTTGGGTAACAATGTTAATAGGGCTGCTTTTGCATTCA-AGCC----------CTGTGAGAGT--TC--------CA------GTAT-----AAGTTTATT-----------------TCCATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4106974 312 - 5279953 CCGTGATGTGGACCTCAATGTTAATAGTACTGCATTTGTCCTGG-CGGTCTCTGGG-GGTTACATAGGA--CTCACACATATA------CTATAAAACAAGGT-ATCAGGAGTGAGTCAGCCT----AAGAGTAAGGGTTCATATCTCCTCGC--CTGCTGGTGGGTGCtattaaatattctttttttatttttttattctatgatcttttttttttaatgttacattaaaaaaatttaaGAGGTTTCCATATACCTTCCACTCCCCTCTCACCCCACTCCTCCTCCATCAACAACCTCTTTCACCATTAAATGTTCTTTATTTCCATG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1882977 595 + 4188776 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=412113.000000 s hg38.chr4_KI270787v1_alt 78275 55 + 111943 TTTCTGGCCCCTTAAAAAA-CAGTAAACTTAAAAAATCGTTTACTGTATTTATAGG s panTro5.chr4 119642914 42 - 194502333 TTTCTGGCCCCTTAAAAAA-CTGT-------------CGTTTACTGTATTTATAGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121056350 42 - 195804263 TTTCTGGCCCCTTAAAAAA-CTGT-------------CGTTTACTGTATTTATAGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487588 42 - 17550833 TTTCTGGCCCCTTAAAAAA-CTGT-------------CGTTTACTGTATTTATAGG i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111570127 42 - 190429646 TTTCTGGCCCTTTAAAAAA-CTGT-------------CATTTACTATATGTATAGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110739312 42 - 189454096 TTTCTGGCCCTTTAAAAAA-CTGT-------------CATTTACTATATGTATAGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305814 42 + 26754465 TTTCTGGCCCTTTAAAAAA-CTGT-------------CATTTACTATATGTATAGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4207355 42 - 5137665 TTTCTGGCCCTTTAAAAAA-CTGT-------------CATTTACTATATGTATAGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122916977 42 - 135778131 TTTCTGGCCCCTTAAAAAA-CTGT-------------CATTTACTATATTTATAGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2029047 42 + 2427316 TTTCTGGCCCTTTAAAAAA-CTGT-------------CATTTACTATATGTATAGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324635 42 + 1448899 TTTCTGGCCCCTTAAAAAA-CTGT-------------CATTTACTATATTTATAGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032776 42 - 190850796 TTTCTGGCCCCTTAAAAAG-CTGT-------------TGTTTACTGTATTTATGGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192859 42 - 15139346 TTTCTGGCCCCTTAAAAAG-CTGT-------------TGTTTACTGTATTTATGGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6977316 43 - 7304997 TTTCTGGCCCCTTAAAAAGCCTGT-------------TGTTTACTGTATTTATGGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9394580 42 - 11631747 TTTCTGGCCCCTTCAAAAG-CTGT-------------TGTTTACTGTAGTTATGGG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1793161 36 + 3286835 TTTCTGTCCCTTAGAAAAA-CTAT-------------GAGTTAC------TATAAG i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8627634 36 + 8790067 TTTCTGCTCCCTTAGAAAA-CAGT-------------GATTTAC------TATAAT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48015319 33 + 63241923 CTTCCAGTGCCATAGAAAA-CCAC-------------GGTCTAC---------AGG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4107286 42 - 5279953 TCTTTGGTCCTTTAGGAAA-CTAC-------------GTTTCCCTGTGTTTACAGG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1882977 595 + 4188776 I e mm10.chr5 76428862 299 + 151834684 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=138207.000000 s hg38.chr4_KI270787v1_alt 78330 11 + 111943 ACTACATTCCG s panTro5.chr4 119642956 11 - 194502333 ACTACATTCTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121056392 11 - 195804263 ACTACATTCTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487630 11 - 17550833 ACTACATTCCA i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111570169 11 - 190429646 ACTACATTCCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110739354 11 - 189454096 ACTACATTCCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305856 11 + 26754465 ACTACATTCCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4207397 11 - 5137665 ACTACATTCCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122917019 11 - 135778131 ACTACATTCCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2029089 11 + 2427316 ACTACATTCCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324677 11 + 1448899 ACAACATTCCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032818 11 - 190850796 ACTGCATTCTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192901 11 - 15139346 ACTACATTCTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6977359 11 - 7304997 ACTATATTCTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9394622 11 - 11631747 ACTACATTCTA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1793197 11 + 3286835 ACTATATTTGA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8627670 11 + 8790067 ACTACATTTGA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76429161 11 + 151834684 ACTCCATTTGA i mm10.chr5 I 299 C 0 s canFam3.chr13 48015352 11 + 63241923 ACTACATTTGA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4107328 11 - 5279953 ACTACTTTTGA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1882977 595 + 4188776 I e nomLeu3.chr9 69356355 1512 - 118206036 I a score=394622.000000 s hg38.chr4_KI270787v1_alt 78341 23 + 111943 ATTTAGGTCAGAACTTCTTTAAC s panTro5.chr4 119642967 23 - 194502333 ATTTAGGTCAGAACTTCTTTAAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121056403 23 - 195804263 ATTTAGGTCAGAACTTCTTTAAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487641 23 - 17550833 ATTTAGGTCAGAACTTCTTTAAC i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111570180 23 - 190429646 ATTTAGGTCAGAACTTCTTTAGC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110739365 23 - 189454096 ATTTAGGTCAGAACTTCTTTAGC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305867 23 + 26754465 ATTTAGGTCAGAACTTCTTTAGC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4207408 23 - 5137665 TTTTAGGTCAGAACTTCTTTAGC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122917030 23 - 135778131 ATTTAGGTCAGAACTTCTTTAGC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2029100 23 + 2427316 ATTTAGGTCAGAACTTCTTTAGC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324688 23 + 1448899 ATTTAGGTCAGAACTTCTTTAGC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032829 23 - 190850796 ATTTAGGTCAGAACTTCTTTAGC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192912 23 - 15139346 ATTTAGGTCAAAACTTCTTTAGC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6977370 23 - 7304997 ATTTAGGTCAGAACTTCTTTAGC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9394633 23 - 11631747 ATTTAGGTCAGAACTTCTTTAGC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1793208 23 + 3286835 ATGTAGGCCATAACTTCTTTAGC i micMur3.chrUn_NW_017968520v1 C 0 I 1 s proCoq1.NW_012140747v1 1883572 23 + 4188776 ATTTAGGCCACAACTTCTTTAGC i proCoq1.NW_012140747v1 I 595 I 1 s otoGar3.GL873602 8627681 23 + 8790067 ATTTAGGTCATAACTTCTTTAGC i otoGar3.GL873602 C 0 I 143 s mm10.chr5 76429172 23 + 151834684 ATTTAGGTCAGGGCTTCATTAGC i mm10.chr5 C 0 I 1 s canFam3.chr13 48015363 23 + 63241923 ATTCAGGTCATAACTTCTTTAGT i canFam3.chr13 C 0 I 1 s dasNov3.JH568349 4107339 23 - 5279953 ATTTAGGTCATAACTTCTTTAAT i dasNov3.JH568349 C 0 C 0 e nomLeu3.chr9 69356355 1512 - 118206036 I a score=333589.000000 s hg38.chr4_KI270787v1_alt 78364 28 + 111943 -CAATCCT---------------------------GAAGGCTGTCAAAATACTTGG s panTro5.chr4 119642990 28 - 194502333 -CAATCCT---------------------------GAAGGCTGTCAAAATACTTGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121056426 28 - 195804263 -CAATCCT---------------------------GAAGGCTGTCAAAATACTTGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487664 28 - 17550833 -CAATCCT---------------------------GAAGGCTGTCAAAATACTTGG i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111570203 28 - 190429646 -CAATCCT---------------------------GAAGGCTGTCAAAATACTTGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110739388 28 - 189454096 -CAATCCT---------------------------GAAGGCTGTCAAAATACTTGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305890 28 + 26754465 -CAATCCT---------------------------GAAGGCTGTCAAAATACTTGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4207431 28 - 5137665 -CAATCCT---------------------------GAAGGCTGTCAAAATACTTGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122917053 28 - 135778131 -CAATCCT---------------------------GAAGGCTGTCAAAATACTTGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2029123 28 + 2427316 -CAATCCT---------------------------GAAGGCTGTCAAAATACTTGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324711 28 + 1448899 -CAATCCT---------------------------GAAGGCTGTCAAAATACTTGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032852 28 - 190850796 -CAGTCCT---------------------------CAAGGCTGTCAAAATACTTGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192935 28 - 15139346 -CAGTCCT---------------------------GAAGGCTGTCATAATACTTGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6977393 28 - 7304997 -CAGTTCT---------------------------GAAGGCTGTCAGAATACTTCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9394656 28 - 11631747 -CAGTCCT---------------------------GAAGCCTGTCAAAATACTTGG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1793232 28 + 3286835 -TATTGCT---------------------------GAAGACTGTCAAAGTACTTGG i micMur3.chrUn_NW_017968520v1 I 1 C 0 s proCoq1.NW_012140747v1 1883596 28 + 4188776 -TATTGCT---------------------------GAAGACTGTCAAAGTACTTGG i proCoq1.NW_012140747v1 I 1 C 0 s otoGar3.GL873602 8627847 55 + 8790067 -tcttgcctcagtctcccgagtagctgggcccacagatgcccaccataacacctgg i otoGar3.GL873602 I 143 I 146 s mm10.chr5 76429196 28 + 151834684 -TCTTGGT---------------------------GGAGCCTGTCAGACTATGGAG i mm10.chr5 I 1 C 0 s canFam3.chr13 48015387 28 + 63241923 -TATTGCT---------------------------GAAGACTGCCAAAATACTTGG i canFam3.chr13 I 1 C 0 s dasNov3.JH568349 4107362 17 - 5279953 CTAATGTT---------------------------GAAGACTGG------------ i dasNov3.JH568349 C 0 C 0 e nomLeu3.chr9 69356355 1512 - 118206036 I a score=116529.000000 s hg38.chr4_KI270787v1_alt 78392 16 + 111943 TTTCTCTTTTTACATT s panTro5.chr4 119643018 16 - 194502333 TTTCTCTTTTTACATT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121056454 16 - 195804263 TTTCTCTTTTTACATT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487692 16 - 17550833 TTTCTCTTTTTACATT i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111570231 16 - 190429646 TTTCTCTTTTTAAATT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110739416 16 - 189454096 TTTCTCTTTTTAAATT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305918 16 + 26754465 TTTCTCTTTTTAAATT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4207459 16 - 5137665 TTTCTCTTTTTAAATT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122917081 16 - 135778131 TTTCTCTTTTTACATT i chlSab2.chr7 C 0 I 333 s manLeu1.NW_012104388v1 2029151 16 + 2427316 TTTCTCTTTTTAAATT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324739 16 + 1448899 TTTCTCTTTTTAAATT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032880 3 - 190850796 TTT------------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192963 3 - 15139346 TTT------------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6977421 3 - 7304997 TTT------------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9394684 3 - 11631747 TTT------------- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1793260 16 + 3286835 TTTCTCTTTTCAAACT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1883624 16 + 4188776 TTTCTCTTTTTAAATT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8628048 16 + 8790067 TTTCTCTTGTTAAACT i otoGar3.GL873602 I 146 C 0 s mm10.chr5 76429224 15 + 151834684 CTTGTCTCTCAAACT- i mm10.chr5 C 0 C 0 s canFam3.chr13 48015415 16 + 63241923 TTTCTCTTTTTAAACT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4107379 16 - 5279953 TTTCTCCTTTTAAACT i dasNov3.JH568349 C 0 C 0 e nomLeu3.chr9 69356355 1512 - 118206036 I a score=252845.000000 s hg38.chr4_KI270787v1_alt 78408 20 + 111943 CAAATTACTCCATGCTAATG s panTro5.chr4 119643034 20 - 194502333 CAAATTACTCCATGCTAATA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121056470 20 - 195804263 CAAATTACTCCATGCTAATA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487708 20 - 17550833 CAAATTACTCCATGCTTATA i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111570247 20 - 190429646 CAAATTACTCCATGCTAATA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110739432 20 - 189454096 CAAATTACTCCATGCTAATA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305934 20 + 26754465 CAAATTACTCCATGCTAATA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4207475 20 - 5137665 CAAATTACTCCATGCTAATA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122917430 20 - 135778131 CAAATTACTCCATGCTAATA i chlSab2.chr7 I 333 C 0 s manLeu1.NW_012104388v1 2029167 20 + 2427316 CAAATTACTCCATGCTAATA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324755 20 + 1448899 CAAATTACTCCATGCTAATA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032883 13 - 190850796 -------TTCCATTCTAATA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192966 13 - 15139346 -------CTCCATGCTAATA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6977424 13 - 7304997 -------CTCCATGCTAATA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9394687 13 - 11631747 -------CTTCATGCTAATA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1793276 20 + 3286835 CACATTACTCCATGCTAATA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1883640 20 + 4188776 CTAATTACCCCATGCTAATA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8628064 20 + 8790067 AATATTACTCTATGCCAACA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76429239 20 + 151834684 CAAATTTCTCTGCGATAAGA i mm10.chr5 C 0 C 0 s canFam3.chr13 48015431 20 + 63241923 CAAATTGTTCTGTGCCCAGA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4107395 20 - 5279953 CAAATTACCCCATGCTAATA i dasNov3.JH568349 C 0 C 0 e nomLeu3.chr9 69356355 1512 - 118206036 I a score=2949805.000000 s hg38.chr4_KI270787v1_alt 78428 193 + 111943 TCAGAAAAAC-TCATGGAATCTTCAATTTATCTTTGAGTTT-TGATCTAATTTTATGTGAAAAATTTCCACTTGATAGTGCGA--TTTTTAAAAA--------------------------CTGTCCTCTTTGGGCATTTAATCAAACACTGATCACATAAGGGCTCATTTTTTCAAAGAACAGAC-CCATGA----ACTGAGAATCCTTGCAAATGTACTTGATTTT s panTro5.chr4 119643054 193 - 194502333 TCAGAAAAAC-TCATGGAGTCTTCAATTTATCTTTGAGTTT-TGATCTAATTTTATGTGAAAAATTTCCACTTGATAGTGCGA--TTTTTAAAAA--------------------------CTGTCCTCTTTGGGCATTTAGTCAAACACTGATCACATAAGGGCTCATTTTTTCAAAGAACAAAC-CCATGA----ACTGAGAATCCTTGCAAATGTACTTGATTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121056490 193 - 195804263 TCAGAAAAAC-TCATGGAGTCTTCAATTTATCTTTGAGTTT-TGATCTAATTTTATGTGAAAAATTTCCACTTGATAGTGCGA--TTTTTAAAAA--------------------------CTGTCCTCTTTGGGCATTTAGTCAAACACTGATCACATAAGGGCTCATTTTTTCAAAGAACAAAC-CCATGA----ACTGAGAATCCTTGCAAATGTACTTGATTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487728 192 - 17550833 TCAGAAAAAC-TCATGGAATCTTCAATTTATCTTTGAGTTT-TGATCTAATTTTATGTGAAAAATTTCCACTTGATAGTGCGA--TTTTTAAAAA--------------------------CTGTCCTCTTTGGGCATTTAATCAAACACTGATCACATAA-GGTTCATTTTTTCAAAGAACAAAC-CCATGA----ACTGAGAATCCTTGCAAATGTACTTGATTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69357867 193 - 118206036 tcagaaaaac-tcatggaaTCTTCAATTTATCTTTGAGTTT-TGATCTAATTTTATGTGAAAAATTTCCACTTGATAGTGCGA--TTTTTAAAAA--------------------------CTGTCCTCTTTGGGCATTTAATCAAACACTGATCACATAAGGGTTCATTTTCTCAAAGAACAAAC-CCATGA----ACTGAGAATCCTTGCAAATATACTTGATTTT i nomLeu3.chr9 I 1512 C 0 s rheMac8.chr5 111570267 192 - 190429646 TCAGAAAAAC-TCATGGAATCTTCCATTTATCTTTGAGTTT-TGATCTAATCTTATGCAACAAATTTCCACTTGACAGTGCGA--TTTTTTTAAA--------------------------ATGTCCTCTTTGGGCATTTAATCAAACCCTGATCACATAATGGTTCA-TTTTTCAAAGAACAGAC-CCATGA----ACTGAGAATCCTTGAAAATGTATCTGATTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110739452 192 - 189454096 TCAGAAAAAC-TCATGGAATCTTCCATTTATCTTTGAGTTT-TGATCTAATCTTATGCGACAAATTTCCACTTGACAGTGCGA--TTTTTAAAAA--------------------------ATGTCCTCTTTGGGCATTTAATCAAACCCTGATCACATAATGGTTCA-TTTTTCAAAGAACAGAC-CCATGA----ACTGAGAATCCTTGAAAATGTATCTGATTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13305954 192 + 26754465 TCAGAAAAAC-TCATGGAATCTTCCATTTATCTTTGAGTTT-TGATCTAATCTTATGCGACAAATTTCCACTTGACAGTGCGA--TTTTTTAAAA--------------------------ATGTCCTCTTTGGGCATTTAATCAAACCCTGATCACATAATGGTTCA-TTTTTCAAAGAACAGAC-CCATGA----ACTGAGAATCCTTGAAAATGTATCTGATTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4207495 191 - 5137665 TCAGAAAAAC-TCATGGAATCTTCCATTTATCTTTGAGTTT-TGATCTAATCTTATGCGACAAATTTCCACTTGACAGTGCGA--TTTTTAAAAA--------------------------ATGTCCTCTTTGGGCATTTAATCAAACCCTGATCACATAATGGTTCA--TTTTCAAAGAACAGAC-CCATGA----ACTGAGAATCCTTGAAAATGTATTTGATTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122917450 192 - 135778131 TCAGAAAAAC-TCATGGAATCTTCCATTTATCTTTGAGTTT-TGATCTAATCTTATGTGACAAATTTCCACTTGACAGTGCGA--TTTTTGAAAA--------------------------CTGTTCTCTTTAGGCATTTAATCAAACCCTGATCACATAATGGTTCA-TTTTTCAAAGAACAGAC-CCATGA----ACTGAGAATCCTTGAAAATGTATTTGATTTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2029187 192 + 2427316 TCAGAAAAAC-TCATGGAATCTTCCATTTATCTTTGAGTTT-TGATCTAATCTTATGGGACAAATTTCCACCTGACAGTGCGA--TTTTTAAAAA--------------------------ATGTCCTCTTTGGGCATTTAATCAAACCCTGATCACATAATGGTTCA-TTTTTCAAAGAACAGAC-CCATGA----ACTGAGAATCCTTGAAAATGTATTTGATTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324775 192 + 1448899 TCAGAAAAAC-TCATGGAATCTTCCATTTATCTTTGAGTTT-TGATCTAATCTCATGTGACAAATTTCCACTTGACTATGCGA--TTTTTAAAAA--------------------------CTGTCCTCTTTGGGCATTTAATCAAACCCTGATCACATAATGGTTCA-TTTTTCAAAGAACAGAC-CCATGA----ACTGAGAATCCTTGAAAATGTATTTGATTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53032896 194 - 190850796 TCAGAAAAAC-TCATGGAATCTTCAATTTATCTTTGAGTTT-TGATCTAATTTTATATGACAAATTTCCACTTGATAGTGCGATTTTTTTTAAAA--------------------------CGGTCCTCTTTGGGCATTTAATCAAACACTGATCATATAAGGGTTCA-ATTTTCAAAGAATGGAC-TCATGA----ACTGAGAATCCTTGAGAATGGACTTGATTTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8192979 192 - 15139346 TCAGAAAAAC-CCATGGAATCTTCAATTTGTCTTTAAGTTT-TGATCTAATTTTATATGACAAATTTCTACTTGATAGTGCAA--CTTTGAAAAA--------------------------CCGTCCTCTTTGGGCATTTAATCAAACACTGATCATATAAGGGTTCA-TTTTTCAAAGAACGGAC-CCATGA----ACTGAGAATCCTTGAAAATGTACTTGATTTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6977437 186 - 7304997 TCAGAAAAAC-TCATGGAATCTTCAA------TTTAAGTTT-TGATCTAATTTTATATGACAAATTTCCACTTGACAGTGCGA--TTTTTAAAAA--------------------------CCGTCCTCTTTGGGCATTTAATCAAACACTGATCATATAAAGGTTCA-TTTTTCAAAGAACAGAC-CCATGA----ACTGAGAATCCTTGAAAATGTACTTGATTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9394700 192 - 11631747 TCAGAAAAAC-TCGTGGAATCTTCAATTTATCTTTGAGTTT-TGATCTAATTTTATATGACAAACTTCCACTTGATAGTGCGA--TTTTTTAAAA--------------------------CCGTCCTCTTTGGGCATTTAATTAAACACTGATCATATAAGGGTTCA-TTTTTCGAAGAACGGAC-CCATGA----ACTGAGAATCCTTGAAAATGGACTTCATTTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1793296 187 + 3286835 TCATAAAAAC-TCATGGAATCTTCAATTCACCTTTGAATTT-TGATCTAATTTTCTATCACCCATTTCTACTTGACAATGTGA------TAAAAA--------------------------CCATCCTCTTTGAGCATTTGATC-AACACTAATCACATAAGGGTTCG-CTTTTCAGAGAATAGAC-CCATGA----ACTAAGAATTCTTGAAAATATATTTGAGTTT i micMur3.chrUn_NW_017968520v1 C 0 I 1 s proCoq1.NW_012140747v1 1883660 188 + 4188776 TCATAAAAAC-TCATGGAATCTTCAATTCACCTTTGAATTT-TGATTTAATTTTCTATCACCCATTTCTACTTGACATTGTGA------TAAAAA--------------------------CCATCCTCTTTGAGCATTTAATCAAACACTGATCACATAAGGGTTCA-TTTTTCAAAGAATAGAC-CCATGA----ACTGAGAATCCTTGAAAATATACTTGAGTTT i proCoq1.NW_012140747v1 C 0 I 1 s otoGar3.GL873602 8628084 180 + 8790067 TCATAAAAAC-TTATGGAATC-TCAATTCACCTTTGAATTT-TGATCTAATTTTCTATGACCAATTTCTACTTGACATTGTGA------TTAAAA--------------------------CTGTCCTTTTTGATCATTTAATCAAACACTGATCACATAAAGATTCA-TTTTGCAAAAAATA--------GA----ACTGAGAATCCTTGAAAATATTCTTAAGTTA i otoGar3.GL873602 C 0 I 268 s mm10.chr5 76429259 217 + 151834684 TCATAGAAAT-TCATGAACTATTCAATTTACCTTCGAGTTTATAATCATCTTTTCTATGACATTTCTTCATTTGACATTGCAA-------aagaagaagaagaagaagaagaagaagaagTCTGCCTTCTCTGGATATTTAATCAAACACTGGTCACCTAAAGGTTCA--CTCTCAAGGAACAAAC-CCCAGAAATCACTGAAAATCACTGTATTTGTTTCTGGCTTG i mm10.chr5 C 0 C 0 s canFam3.chr13 48015451 189 + 63241923 TCATAAAAAT-TCATGGAATCTCCAACTTACCTTTGAGCTC-TGATCTAATTTTTTATGACACATCTCCACTTGACATTGTGA------TGAAAA--------------------------CTGTCCTCTTTGAACATTTAATCAAACACTAATCACATAAGGGTTTA-TTATTTGAAGAACAGTTACCATGA----AATCAGAATCCTTGAAAGTATACTTAATTTT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4107415 172 - 5279953 TCATAAAAATGCCATGGAATCTTGAATTTACCTTTGAATCC-TGATCTAATTTTATATGACACATCTCCACTTGAGATTGTGA------TGAGAG--------------------------CTGTCTTCCTTGGGCATTTAATCAAACATCAATCACATAAGGGTTCA-TTTTTCAAA-------------GA----ACTCAAAATCCTTTAAAAT-TACTTGA---- i dasNov3.JH568349 C 0 C 0 a score=16044115.000000 s hg38.chr4_KI270787v1_alt 78621 1025 + 111943 AAGTGAAATGGCTGGCCATTCTGAAATAAGAATA-GTAGGGTTTTTAAAAAACAGAGGT----TTAATGACATTTGTCACATGCCTGCATTC--AAGTACTAGGCTGTAACTTTTAGCAAAACTAAGTC-----TTTAAGAATGTGCCATAAGCTCTACTGG-AAAGAATATAAATAATGGAAGCCGGAGCCTAGAAAATGGCAAGCTGGCTCAGCCTCCTGTAGCATCATTCATTAGATCCAACT--CCAAAAGCTAGAAGTCATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAGGAGACTAAACAAACGGCCAACTTAAAAATTCATTATAGTATCTGCTCCCTTTCCAAGACATAAAATATACTCTGTAATATTTGCTCTTCTGAAT--CCT--GAGACTTTAATCT-----------TCAAG---GCTTCGTGTGCTTGTATGACACCA------------TCTCTTGTCCATTATT------------------TTTAAA-------AACACATCATATCTGAAAGTTTTAAAACGAGAAGTGAAAATGCCGCTAGTCAGCATATTAATTTCCCTGAAATAAGCAATATCAGTAGTGATGACAAAAGTTACATCAATGCA---CCAGATTCCTGGGAAGGAAGTGT------GAAATGCTAAAC-TACATAGTTCGCAGTTACCAACCAATGGTAGCAAATGGATGATAAAATCCAGGGGCATGAACTCACTGTTAG--AAGTCCATGAACAGAAGAAATTCAATTTCATACAGCTACG-AAGA-TAACATAAAATTATCAAGTATATAATATAAAAGTGTGA----TGGTCAGGCACCATTTTGAAAACATAAAG----ACTAGCCATCTGGGCAAAGGCCCAGACT--TAGTACAGATAAAGCAAGTGGCTGCTTACCTTATCACATCTCAAAGACTTCT--AA--AAAGGGCCCATGAACTCAAGA----TGGCTAT--AGCTCAAGTAGG-CGTAGG-CAAGA--CTTCTG--CACTGCAGAATGGG s panTro5.chr4 119643247 1025 - 194502333 AAGTGAAATGGCTGGCCATTCTGAAATAAGAATA-GTAGGGTTTTTAAAAAACAGAGGT----TTAATGACATTTGTCACATGCCTGCATTC--AAGTACTAGGCTGTAACTTTTAGCAAAACTAAGTC-----TTTAAGAATGTGCCATAAGCTCTACTGA-AAAGAACATAAATAATGGAAGCCGGAGCCTAGAAAATGGCAAGCTGGCTCAGCCTCCTGTATCATCATTCATTAGATCCAACT--CCAAAAGCTAGAAGTCATAAAAAATGCATGCAGGGTTTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAGGAGACTAAACAAACGGCCAACTTAAAAATTCATTATATTATCTGCTCCCTTTCCAAGACATAAAATGTACTCTGTAATATTTGCTCTTCTGAAT--CCT--GAGACTTTAATCT-----------TCAAG---GCTTCGTGTGCTTGTATGACACCA------------TCTCTTGTCCATTATT------------------TTTAAA-------AACACATCATATCTGAAAGTTTTAAAATGAGAAGTGAAAATGCCGCTAGTCAGCATATTAATTTCCCTGAAATAAGCAATATCAATAGTGATGACAAAAGTTACATCAGTGCA---CTAGATTCCTGAGAAGGAAGTGT------GAAATGCTAAAC-TACATAGTTCGCAGTTACCAACCAATGGTAGCAAATGGATGATAAAATCCAGGGGCATGAACTCACTGTTAG--AAGTCCATGAACAGAAGAAATTCAATTTCATACAGCTACG-AAGA-TAACATAAAATTATCAAGTATATAATATAAAAGTGTGA----TGGTCAGGCACCATTTTGAAAACATAAAG----ACTAGCCATCTGGGCAAAGGCCCAGACT--TAGTACAGATAAAGCAAGTGGCTGCTTACCTTATCACATCTCAAAGACTTCT--AA--AAAGGGCCCATGAACTCAAGA----TGGCTAT--AGCTCAAGTAGG-CGTAGT-CAAGA--CTTCTG--CACTGCAGAATGGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121056683 1024 - 195804263 AAGTGAAATGGCTGGCCATTCTGAAATAAGAATT-GTAGGGTTTTTAAAAAACAGAGGT----TTAATGACATTTGTCACATGCCTGCATTC--AAGTACTAGGCTGTAACTTTTAGCAAAACTAAGTC-----TTTAAGAATGTGCCATAAGCTCTACTGA-AAAGAACATAAATAATGGAAGCCGGAGCCTAGAAAATGGCAAGCTGGCTCAGCCTCCTGTATCATCATTCATTAGATCCAACT--CCAAAAGCTAGAAGTCATAAAAAATGCATGCAGGG-TTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAGGAGACTAAACAAACGGCCAACTTAAAAATTCATTATATTATCTGCTCCCTTTCCAAGACATAAAATGTACTCTGTAATATTTGCTCTTCTGAAT--CCT--GAGACTTTAATCT-----------TCAAG---GCTTCGTGTGCTTGTATGACACCA------------TCTCTTGTCCATTATT------------------TTTAAA-------AACACATCATATCTGAAAGTTTTAAAATGAGAAGTGAAAATGCCGCTAGTCAGCATATTAATTTCCCTGAAATAAGCAATATCAATAGTGATGACAAAAGTTACATCAGTGCA---CTAGATTCCTGAGAAGGAAGTGT------GAAATGCTAAAC-TACATAGTTTGCAGTTACCAACCAATGGTAGCAAATGGATGATAAAATCCAGGGGCATGAACTCACTGTTAG--AAGTCCATGAACAGAAGAAATTCAATTTCATACAGCTACG-AAGA-TAACATAAAATTATCAAGTATATAATATAAAAGTGTGA----TGGTCAGGCACCATTTTGAAAACATAAAG----ACTAGCCATCTGGGCAAAGGCCCAGACT--TAGTACAGATAAAGCAAGTGGCTGCTTACCTTATCACATCTCAAAGACTTCT--AA--AAAGGGCCCATGAACTCAAGA----TGGCTAT--AGCTCAAGTAGG-CGTAGT-CAAGA--CTTCTG--CACTGCAGAATGGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4487920 1026 - 17550833 AAGTGAAATGGCTGGCCATTCTGAAATAAGAATAGGTAGGGTTTTTAAAAAACGGAGGT----TTAATGACATTTGTCACGTGCCTGCATTC--AAGTACTAGGCTGTAACTTTTAGCAAAACTAAGTC-----TTTAAGAATGTGCCATAAGCTCTACTGA-AAAGAACATAAATAATGGAAGCCAGAGCCTAGGAAATGGCAAGCTGGCTCAGCCTCCTATAGCATCATTCATTAGATCCAACT--CCAAAAGCTAGAAGTCATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAGGAGACTAAACAAACGGCCAACTTAAAAATTCATTATAGTATCTGCTCCCTTTCCAAGACATAAAATGTACTCTGTAATATTTGCTCTTCTGAAT--CCT--GAGACTTTAATCT-----------TCAAG---GCTTCGTGTGCTTGTATGACACCA------------TCTCTTGTCCATTATT------------------TTTAAA-------AACACATCATATCTGAAAGTTTTAAAACGAGAAGTGAAAATGCCGCTAGTCAGCCTATTACTTTCCCTGAAATAAGCAATATCAATAGTGATGACAAAAGTTACATCAATGCA---CTAGATTCCTGAGAAGGAAGTGT------GAAATGCTAAAC-TACATAGTTCGCAGTTACCAGCCAATGGTAGCAAATGGATGATAAAATCCAGGGGCATGAACTCACTGTTAG--AAGTCCATGAACAGAAGAAATTCAATTTCATACAGCTACG-AAGA-TAACATAAAATTATCAAGTATATAATATAAAAGTGTGA----TGGTCAGGCACCATTTTGAAAACATAAAG----ACTAGCCATCTGGGCAAAGGCCCAGACT--TAGTACAGATAAAGCAAGTGGCTGCTTACCTTATCACATCTCAAAGACTTCT--AA--AAAGGGCCCATGAACTCAAGA----TGGCTAT--AGTTCAAGTAGG-CGTAGT-CAAGA--CTTCTG--CACTGCAGAATGGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69358060 1025 - 118206036 AAGTGAAATGGCTGGCCATTCTGAAATAAGAATA-GTAGGGTTTTTAAAAAACGGAGGT----TTAATGACATTTGTCACATGCCTGCATTC--AAGTACTAGGCTGTAACTTTTAGCAAAACTAAGTC-----TTTAAGAATGTGCCATAAGCTCTACTGG-AAAGAACATAAATAATGGAAGCCAGAGCCTAGAAAATGGCAAGCTGGCTCAGCCTCCTGTAGCATCATTCATTAGATCCAACT--CCAAAAGCTAGAAGTCATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCATGGCCTCAGGAGACTAAACAAACTGCCAACTTAAAAATTCATTATAGTATCTGCTCCCTTTCCAAGACATAAAATGTACTCTGTAATATTTGCTCTTCTGAAT--CCT--GAGACTTTAATCT-----------TCAAG---GCTTCGTGTGCTTGTATGACACCA------------TCTCTTGTCCATTGTT------------------TTTAAA-------AACACATCATATCCAAAAGTCCTAAAACGAGAAGTGAAAATGCTGCTAGTCAGCATATTAATTTCCCTGAAATAAGCAGTATCAATAGCGATGACAAAAGTTACATCAATGCA---CTAGATTCCTGGGAAGGAAGTGT------GAAATGCTAAAC-TACATAGTTCGCAGTTACCAACCAATGGTAGCAAATGGATGATAAAATCCAGGGGCATGAACTCACTATTAG--AAGTCCATGAACAGAAGAAATTCAATTTCATACAGCTATG-AAGA-TAACATAAAATTATCAAGTATATAATATAAAAGTGTGA----TGGTCAGGCACCATTTTGAAAACATAAAG----ACTAGCCATCTGGGAAAAGGCCCAGACT--TAGTACAGATAAAGCAGGTGGCTGCTTACCTTATCACATCTCAAAGACTTCT--AA--AAATGGCCCATGAACTCAAGA----TGGCTAT--AGCTCAAGTAGG-CGTAGT-CAAGA--CTTCTG--CACTGCAGAATGGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111570459 1038 - 190429646 AAGTGAAATGGCTGGCCATTCTGAAATAAGAACA-GTAGGGTTTTTAAAAAACAGAGGT----TTAATGACATTTGTCACATGTCTGCATTC--AAGTACTAGGCTGTAACTTTTAGCAAAACTAAGTC-----TTTAAGAATGTGCCATAAGCTCTACTGG-AAAGAACATAAATAATGGAAGCCGGAGCCTGGAAAATGGCAAGCTGGCTCAGCCTCCTGTAGCATCATTCATTAGCTCCAACT--CCAAAAGCTAGAAGTCATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAGGAGACTAAACAAATTGCCAACTCAAACATTCATTACAATATCTGCTCCCTTTCCAA-ACATAAAATGTACTCTGCAATATTTGCTCTTCTGAAT--CCT--GAGACCTTAATCTCAGGATTAAGACCAAG---TCTTCCTGTGCTTGTAAGACACCA------------TCTCTTGTCCATTGTT------------------TTTAAA-------AAGACATCATATCTGAAAGTCCTAAAATGAGAAGTGAAAATGCCACTGGTCAGCATATTAATTTCCCTGAAATAAGCAATATCAACAGTGATGACAAAAGTTATATCAATACA---CTAGATTCCTGGGAAGGAAGTGT------GAAATGCTAAAC-TACATAGTTTGCAGTTACCAACCAATGGTAGCAAATGGCTGATAAAATCCAGGGGCATGAACTCACTGTTAG--TAGTCCATGAACAGAAGAAATTCAATTTCATACAGCTACG-AAGA-TAACATAAAATTATCAAGTATATAACATAAAAGTGTGA----TGGTCAGGCACCATTTTGAAAACATAAAG----ACTAGCCATCTGGGCAAAGGCTCAGACT--TAGTACAGATACAGCCGGTGGCTGCTTACCTTATCACATCTGAAAGACTTCT--AA--AAAGGGCCCATCAACTCAAGA----TGGCTAT--AGCTCAAATAGG-CATAGTCCAAGA--CCTCTGCACACTGCAGAATGGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110739644 1038 - 189454096 AAGTGAAATGGCTGGCCATTCTGAAATAAGAACA-GTAGGGTTTTTAAAAAACAGAGGT----TTAATGACATTTGTCACATGTCTGCATTC--AAGTACTAGGCTGTAACTTTTAGCAAAACTAAGTC-----TTTAAGAATGTGCCATAAGCTCTACTGG-AAAGAACATAAATAATGGAAGCCGGAGCCTGGAAAATGGCAAGCTGGCTCAGCCTCCTGTAGCATCATTCATTAGCTCCAACT--CCAAAAGCTAGAAGTCATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAGGAGACTAAACAAATTGCCAACTCAAAAATTCATTATAATATCTGCTCCCTTTCCAA-ACATAAAATGTACTCTGCAATATTTGCTCTTCTGAAT--CCT--GAGACCTTAATCTCAGGATTAAGACCAAG---TCTTCCTGTGCTTGTATGACACCA------------TCTCTTGTCCATTGTT------------------TTTAAA-------AAGACATCATATCTGAAAGTCCTAAAATGAGAAGTGAAAATGCCACTGGTCAGCATATTAATTTCCCTGAAATAAGCAATATCAACAGTGATGACAAAAGTTATATCAATACA---CTAGATTCCTGGGAAGGAAGTGT------GAAATGCTAAAC-TACATAGTTTGCAGTTACCAACCAATGGTAGCAAATGGCTGATAAAATCCAGGGGCATGAACTCACTGTTAG--TAGTCCATGAACAGAAGAAATTCAATTTCATACAGCTACA-AAGA-TAACATAAAATTATCAAGTATATAACATAAAAGTGTGA----TGGTCAGGCACCATTTTGAAAACATAAAG----ACTAGCCATCTGGGCAAAGGCTCAGACT--TAGTACAGATACAGCCGGTGGCTGCTTACCTTATCACATCTGAAAGACTTCT--AA--AAAGGGCCCATCAACTCAAGA----TGGCTAT--AGCTCAAATAGG-CATAGTCCAAGA--CCTCTGCACACTGCAGAATGGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13306146 1038 + 26754465 AAGTGAAATGGCTGGCCATTCTGAAATAAGAACA-GTAGGGTTTTTAAAAAACAGAGAT----TTAATGACATTTGTCACATGTCTGCATTC--AAGTACTAGGCTGTAACTTTTAGCAAAACTAAGTC-----TTTAAGAATGTGCCATAAGCTCTACTGG-AAAGAACATAAATAATGGAAGCCGGAGCCTGGAAAATGGCAAGCTGGCTCAGCCTCCTGTAGCATTATTCATTAGCTCCAACT--CCAAAAGCTAGAAGTCATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAGGAGACTAAACAAATTGCCAACTCAAAAATTCATTATAATATCTGCTCCCTTTCCAA-ACATAAAATGTACTCTGCAATATTTGCTCTTCTGAAT--CCT--GAGACCTTAATCTCAGGATTAAGACCAAG---TCTTCCTGTGCTTGTATGACACCA------------TCTCTTGTCCACTGTT------------------TTTAAA-------AAGACATCATATCTGAAAGTCCTAAAATGAGAAGTGAAAATGCCACTGGTCAGCATATTAATTTCCCTGAAATAAGCAATATCAACAGTGATGACAAAAGTTATATCAATACA---CTAGATTCCTGGGAAGGAAGTGT------GAAATGCTAAAC-TACATAGTTTGCAGTTACCAACCAATGGTAGCAAATGGCTGATAAAATCCAGGGGCATGAACTCACTGTTAG--TAGTCCATGAACAGAAGAAATTCAATTTCATACAGCTACG-AAGA-TAACATAAAATTATCAAGTATATAACATAAAAGTGTGA----TGGTCAGGCACCATTTTGAAAACATAAAG----ACTAGCCATCTGGGCAAAGGCTCAGACT--TAGTACAGATACAGCCGGTGGCTGCTTACCTTATCACATCTGAAAGACTTCT--AA--AAAGGGCCCATCGACTCAAGA----TGGCTAT--AGCTCAAATAGG-CATAGTCCAAGA--CCTCTGCACACTGCAGAATGGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4207686 1027 - 5137665 AAGTGAAATGGCTGGCCATTCTGAAATAAGAACA-GTAGGGTTTTTAAAAAACAGAGGT----TTAATGACATTTGTCACATGTCTGCATTC--AAGTACTAGGCTGTAACTTTTAGCAACACTAAGTC-----TTTAAGAATGTGCCATAAGCTCTACTGG-AAAGAACATAAATAATGGAAGCTGGAGCCTGGAAAATGGCAAGCTGGCTCAGCCTCCTGTAGCATCATTCATTAGCTCCAACT--CCAAAAGCTAGAAGTCATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAGGAGACTAAACAAATTGCCAACTTAAAAATTCATTATAATATCTGCTCCCTTTCCAA-ACATAAAATGTACTCTGCAATATTTGCTCTTCTGAAT--CCT--GAGACCTTAATCT-----------TCAAG---TCTTCCTGTGCTTGTATGACACCA------------TCTCTTGTCCATTGTT------------------TTTAAA-------AAGACATCACATCTGAAAGTCCTAAAATGAGAAGTGAAAATGCCACTGGTCAGCATAATAATTTCCCTGAAATAAGCAATATCAATAGTGATGACAAAAGTTATATCAATACA---TTAGATTCCTGGGAAGGAAGTGT------GAAATGCTAAAC-TACATAGTTTGCAGTTACCAACCAATGGTAGCAAATGGATGATAAAATCCAGGGGCATGAACTCACTCTTAG--TAGTCCATGAACAGAAGAAATTCAATTTCATACAGCTACG-AAGA-TAACATAAAATTATCAAGTATATAACATAAAAGTGTGA----TGGTCAGGCACCATTTTGAAAACATAAAG----ACTAGCCATCTGGGCAAAGGCTCAGACT--TAGTACAGATAAAGCAGGTGGCTGCTTACCTTATCACATCTGAAAGACTTCT--AA--AAAGGGCCCATCAACTCAAGA----TGGCTAT--AGCTCAAATAGG-CATAGTCCAAGA--CCTCTGCACACTGCAGAATGGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122917642 975 - 135778131 AAGTGAAATGGCTGGCCATTCGGAAATAAGAACA-GTAGGGTTTTTAAAAAACAGAGGT----TTAATGGCATTTGTCATGTGTCTGCATTC--AAGTACTAGGCTGTAACTTTTAGCAAAACTAAGTC-----TTTAAGAATGTGCCGTAAGCTCTACTGG-AAAGAACATAAATAATGGAAGCCGGAGCCTGGAAAATGGCAAGCTGGCTCGGCCTCCTGTAGCATCATTCATTAGCTCCAACT--CCAAAAGCTAGAAGTCATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAGGAGACTAAACAAATTGCCAACTTAAAAATTCATTATGATATCTGCTCCCTTTCCAA-ACATAAAATGTACTCTGCAATATTTGCTCTTCTGAAT--CCT--GAGACCTTAATCT-----------TCAAG---TCTTCCTGTGCTTGTATGACACCA------------TCTCTTGTCCATTGTT------------------TTTAAA-------AAGACATCATATCTGAAAGTCCTAAAATGAGAAGTGAAAATGCTACTGGTCAGCATATTAATTTCCCTGAAATAAGCAATATCAATAGTGATGACAAAAGTTATATCAATACA---CTAGATTCCTGGGAAGGAAGTGT------GAAATGCTAAAC-TACATAGTTTGCAGTTACCAACCAATGGTAGCAAATGGATGATAAAATCCAGGGGCATGAACTCACTGTTAG--TAGTCCATGAACAGAAGAAATTCAATTTCATACAGCTACG-AAGA-TAACATAAAATTATCAAGTATATAACATAAAAGTGTGA----TGGTCAGGCACCATTTTGAAAACATAAAG----ACTAGCCATCTGGGCAAAGGCTCAGACT--TAGTACAGATAAAGCAGGTGGCTGCTTACCTTA--------------------------------------------------------------TCAAATAGG-CGTAGTCCAAGA--CCTCTGCACACTGCAGAATGGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2029379 1027 + 2427316 AAGTGAAATGGCTGGCCATTCTGAAATAAGAACA-GTAGGGTTTTTAAAAAACAGAGGT----TTAATGACATTTGTCACATGTCTGCATTC--AAATACTAGGCTGTAACTTTTAGCAACACTAAGTC-----TTTAAGAATGTGCCATAAGCTCTACTGG-AAAGAACATAAATAATGGAAGCTGGAGCCTGGAAAATGGCAAGCTGGCTCAGCCTCCTGTAGCATCATTCATTAGCTCCAACT--CCAAAAGCTAGAAGTCATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAGGAGACTAAACAAATTGCCAACTTAAAAATTCATTATAATATCTGCTCCCTTTCCAA-ACATAAAATGTACTCTGCAATATTTGCTCTTCTGAAT--CCT--GAGACCTTAATCT-----------TCAAG---TCTTCCTGTGCTTGCATGACACCA------------TCTCTTGTCCATTGTT------------------TTTAAA-------AAGACATCATATCTGAAAGTCCTAAAATGAGAAGTGAAAATGCCACTGGTCAGCATAATAATTTCCCTGAAATAAGCAATATCAATAGTGATGACAAAAGTTATATCAATACA---TTAGATTCCTGGGAAGGAAGTGT------GAAATGCTAAAC-TACATAGTTTGCAGTTACCAACCAATGGTAGCAAATGGATGATAAAATCCAGGGGCATGAACTCACTGTTAG--TAGTCCATGAACAGAAGAAATTCAATTTCATACAGCTACG-AAGA-TAACATAAAATTATCAAGTATATAACATAAAAGTGTGA----TGGTCAGGCACCATTTTGAAAACATAAAG----ACTAGCCATCTGGGCAAAGGCTCAGACT--TAGTACAGATAAAGCAGGTGGCTGCTTACCTTATCACATCTGAAAGACTTCT--AA--AAAGGGCCCATCAACTCAAGA----TGGCTAT--AGCTCAAATAGG-CATAGTCCAAGA--CCTCTGCACACTGCAGAATGGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1324967 1017 + 1448899 AAGTGAAATGGCTGGCCATTCTGAAATAAGAACA-GTAGGGTTTTTAAAAAACAGAGGT----TTAATGACATTTGTCACATGTCTGCATTC--AAGTACTAGGCTGTAACTTTTAGCAAAACTAAGTC-----TTCAAGAATGTGCCATAAGCTCTACTGG-AAAGAACATAAATAATGGAAGCCGGAGCCTGGAAAATGGCAAGCTGGCTCAGCCTCCTGTAGCATCATTCATTAGCTCCAACT--CCAAAAGCTAGAAGTCATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCCCCGCAGGTACTTTTCAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAGGAGACTAAACAAATTGCCAACTTAAAAATTCATCATAATATCTGCTCCCTTTCCAA-ACATAAAATGTACTCTGCAATATTTGCTCTTCTGAAT--CCT--GAGACCTTAATCT-----------TCAAG---TCTTCATGTGCTTGTATGACGCCA------------TCTCTTGTCCATTGTT------------------TTTTAA-------AACACATCATATCTGAAAGTTCTAAAATGAGAAGTGAAAATGCCACTGGTCAGCATATAAATTTCCCTGAAATAAGCAATATCAATAGTGATGACAAAAGTTATATCAATACA---CTAGATTCCTGGGAAGGAAGTGT------GAAATGCTAAAC-TACATAGTTTGCAGTTACCAACC----------AATGGATGATAAAAACCAGAGGCATGAACTCACTGTTAG--TAGTCCATGAACAGAAGAAATTCAATTTCATACAGCTACG-AAGA-TAACATAAAATTATCAAGTATATAACATAAAAATGTGA----TGGTCAGGCACCATTTTGAAAAGATAAAG----ACTAACTATCTGGGCAAAGGCTCAGACT--TAGTACAGCTGAAGCAGGTGGCTGCTTATCTTATCACATCTGAAAGACTTCT--AA--AAAGGGCCCATGAACTCAAGA----TGGCTAT--AGCTCAAATAGG-CACAGTCCAAGA--CCTCTGCACACTGCAGAATGGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53033090 1011 - 190850796 AAGTTAAATGGCTGGCCATTCTGAAATAAGAATA-GTAGGGTTTTTAAAAAATGGAGGT----TTAATTACATCTGTCACATGTCTGCATTC--AAGTGCTGGGCTGTAACTTTCAGCAAAACTAAGTC-----TTTAAGAATGTGCCATAAACTCTATTGG-AAAGAACATAAATAATGGAAGCCGGAGCCTGGAAAATGGCAAGCTGGCTCAGCCTCCTGCAGCATCATTCATTAGATGCAACT--CCAAAAGCTAGAAGCCATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAGGAGACTAAACAAATTGCCAACTTAAAAATTCATTATAGCATCTGTTCCCTTTCCAAGACATAAAACATACTCTGTAATATTTGCTCTTCTGAGT--CCT--GAGACCTTAATCT-----------TCATG---GCTTCATGGGCTTGTATGACACCA------------TCTCTTGTCCAGTGCT------------------TTTAAA-------AACACATCATATCGAAAAGTCCTAAAATGAGAAGTGAAAATGCCGCTAGTCAGCACATGAATGCCCCTGGAATTAGCAATATCAAGAGTGATGACAAAAGTGATGTTGATGCA---CTAGATTCCT-GGAAGGAAGTG-----------CGCTAAAC-TACATAGTTTGCAGTTACCAACCAATGGTAACAAATGGATGATAAAATCCAGGGGCATGAACTCCCTGTTAG--AAGTCCATGAACAGAAGAAATTCAATTTTATACAGCTACA-AAGA-AAACATA--------AAGTATATAATATTAAAGCGTGA----TGGTCAGACACCGTTTTGAAAACGTAAAG----ACTAGCCATCTGGGCAAAGGCCCAGCTT--TAGTACAGAGGAAGCAGGTGGCTGCTTACCTTACCACATCTCAAAGACTTAT--AA--AAAGGACCCATGAACTCAAGA----TGGCTGT--AGCTCAAGTAGG-CGTAGT-CAAGA--CTTCCG--CACTCCTGAATGGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8193171 1012 - 15139346 AAGTTAAATGGCTGGCCATTCTGAAATAAGAATA-GTAGGATTTTTCAAAAATGGAGGT----TTAATGACACCTGTCACATGTCTGCATTC--AAGTGCTGGGCTGTAACTTTTAGCAAAACTAAGTC-----TTTAAGAATGTGCCATAAGCTCTATTGG-AAAGAACATAAATAATGGAAGCCGGAGCCTGGAAAATGGCAAGCTGGCTCAGCCTCCTGCAGCATCATTCATTAGCTCCAACT--CCGAAAGCTAGAAGCCATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAGGAGACTAAACAAATTGCCAACTTAAAAATTCATTATAGCATCTGCTCCCTTTCCAAGACGTAAAATGTACTCTGTAATATTTGCTCTTCTGAGT--CCT--GGGACCTTAATCT-----------TCATG---GCTTCGTGTGCTCATGTGACACCA------------TCTCTTGTCCAGTGCT------------------TTTAAA-------AACACATCATATCAAAAAGTCCTAAAATGAGAAGTGAAAATGCCACTAGTCAGCACATTAACGCCCCTGAAATTAACAATATCAATAGTGATGACAAAAGTGATATTGATGCA---CTAGATTCCTGGGAAGGAAGTG-----------CACTAAAC-TACATAGTTTGCAGTTACCAACCAATGGTAGCAAATGGATGATAAAATCCAGGGGGATGAACTCACTGTTAG--AAGTCCATGAACAGAAGAAATTCAATTTCATACAGCTACG-AAGA-TAACATA--------AAGTATATAACATAAAAGTGTGA----TGGTCAGACACCATTTTGAAAACTTAAAG----ACTAGCCATCTCGGCAAAGGCCCAGCTT--TAGTACAGAGGAAGCAGGTGGCTGCTTACCTTATCACATCTCAGAGACTTAT--AA--AAAGGGCCTATGAACTCAAGA----TGGCTAT--AACTCAAGTAGG-CGTAGT-CAAGA--CTTCTG--CACTCCCGAATAGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6977623 1012 - 7304997 AAGTTAAATGGTTGGCCATTCTGAAATAAGAATA-ATAGGATTTTTTTTAAATGGAGGT----TTAATGACACCTGTCACATGTCTGCATTC--AAGTGCTGGGCTGTAACTTTCAGCAAAACTAAGTC-----TTTAAGAACGTGCCATAAGCTCTATTGG-AAAGAACATAAATAATGGAAGCCAGAGCCTGGAAAATGGCAAGCTGGCTCAGCCTCCTGCAGCGTCATTCATTAGATCCAACT--CCAAAAGCTAGAAGCCATAAAAAATGCATGCAGGATTTCTCTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAAGAGACTAAACAAATTGCCAACTTAAAAATTCATTATAACATCTGCTCCCTTTCCAAGACATAAAATGTACTCTGTAATATTTGCTCTTCTGAGT--CCT--GGGACCTTAATCT-----------TCATG---GTTTCGTGTGCTTGTGTGACACCA------------TCTCTTGTCCAGTGCT------------------TTTAAA-------AACACATTATATCGAAAAGTCCTAAAATGAGAAGTGAAAATACTACTAGTCAGCACATTAACGCCCCTGAAATTAGCAATATCAACGGTGATGACAAAAGTGATATTGATGCA---CTAGATTCCTGGGAAGGAAGTG-----------CACTAAAC-TACATAGTTTGCAGTTATCAACCAATGGTAACAAATGGATGATAAAATCCAGGGGCATGAACTCACTGTTAG--AAGTCCATGAACAGAAGAAATTCAATTTCATACAACTATG-AAGA-TAACATA--------AAGTATATAACAAAAAAGTGTGA----TGGTCAGACACCATTTTGAAAACTTAAAG----ACTAGCCATCTGGGCAAAGGCCCAGCTT--TAGTACAGAGGAAGCAGGTGGCTGCTTACCTTATCACATCTCAGAGACTTAT--AA--AAAGGGCCCATGAACTCAAGA----TGGCTAT--AACTTAAGCAGG-CGGAGT-CAAGA--CTTCTG--CACTCCCGAATGGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9394892 1012 - 11631747 AAGTTAAATGGCTGGCCATTCTGAAATAAGAATA-GTAGGGGTTTTAAAAAATGGAGGT----TTAATGACATCTGTCACATGTCTGCATTC--AAGTGCTGGGCTGTAACTTTTAGCAAAACTAAGTC-----TTTAAGAATGTGCCATAAGCTCTATTGG-AAAGAACATAAATAATGGAAGCCGGAGCCTGGAAAATGGCAAGCTGGCTCAGCCTCCTGCAGCATCATTCATTAGATCCAACT--CCAAAAGCTAGAAGCCATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTACTTT-AAATGTTGTTTCTGACTGAGAAATTCCTCGCTGCAGGTACTTTTTAC------------------------CCCTGT-AACCTCAGCAAACTGCCAGGGCCTCAGGAGACTAAACAAATTGCCAACTTAAAAATTCATTATAGCATCTGCTCCCTTTCCAAGACATAAAATGTACTCTGTAATATTTGCTCTTCTGAGT--CCT--GAGACCTTAATCT-----------TCATG---GCTTCATGTGCTCATATGACACCA------------TCTCTTGTCCAGTGCT------------------TTTAAA-------AACACATGATATCAAAAAGTCCTAAAATGAGAAGTGAAAATGCCGCTAGTCAGCACATTAACACCCCTGAAATTAGCAATATCAATAGTGATGACAAAAGTGATACTGATGCA---CTAGGTTCCTGGGAAGGAAGTG-----------CGCTAAAG-CACATAGTTTGCAGTTACCAACCAATGGTAGCAAATGGATGATAAAATCCAGGGGCATGAACTCACTGTTAG--AAGTCCATGAACAGAAGAAATTCAATTTCATCCAGCTACA-AAGA-TAACATA--------AAGTATACAATATAAAAGTGTGA----TGGTCAGACACCATTTTGAAAACTTAAAG----ACTAGCCATCTGGTCAAAGGCCCAGCTT--TACTACAGAGGAAGCAGGTGGCTGCTTACCTTATCACATCTCAAAGACTTAT--AA--AAAGGGCCCATGAACTCAAGA----TGCCTGT--AGCTCAAGTAGG-CGTAGT-CAAGA--CTTCTG--CACTCCCGAATGGG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1793484 1036 + 3286835 AAGTTAAAGGGCTGATT-TTCCTAAATAACAATA-GTGGGG--TTTAAAAAATGGAGGC----TCAATGATATTTGTCACAAGTCTGTATTC--AGGTACTGGGCTGT-ACTTTTAGCAAAACTAAGTC-----TTTAAGAATGTGCCATAGGCTCTATTGG-AAAGGACATAAATAATGGAAACTGGAGCCTGGAAAATGGCAAGCTGGCTCAGCTTCTTGGAGCATCATTCATTAGATCCAGCT--GCAAAAGCTAGAAGTTATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTGCTTT-AAATGTTGGTTCTGACTGAGAAATTCCTCTCTGCAGGTGCTTTTTAC------------------------CCCTGT-AACCTCAGTAAGCTGCCA--------GGAATCTAAACAAATTGCTAGCTTAAAAATTCATTATAGTATCTGTTCCTTTTCCAAGACATAAAATGTACTCTATAATATTTGCTCTTCTGAAT--CCC--AAGACTTTAATCT-----------TCAAG---GCCCTGTGTGCTTATATGATACCA------------TCTCTTTTCCATTGTTAATCTACTGGATAGAGTTTTTAAA-------AACACATCATGCCCACAAGTCCTAAAAAGGGAAGTGAAAATGCCACTAGCCAACACATTAATTTCCCTGAAATAAGCAATATCAATAGAGATGACAAAGGTGATATCAAAGGG---CTAGACTCCTGGGAAGAAAGCATGTGAAGGAAGTGCTGAAC-TACGTAGTCTGCATTTATGAACAGATGCTGGCAAATGAATGATAAGATCCAGGGGCATGAATTCACTGTTAG--AAGTCCATGAACAAGAGAAATTCGATTTCATGCAGCTATG-AAGA-TAATATAAAATTATCAAGGATATAATAAAAAAGCATGA----TGTTCAG-GATTATTTTGGAAATATAAAG----ACTAGCCACCTGGGCAAAGGCTCAGACT--TAGTATAGATGAAACAGGTGACTGCTTACCTTAACACATTTCAAAGACTCAT--AA--AAAGGGCCTATGAACTCAAGT----TGGCTAT--AACTTAAACAGG-CCCAGT-TAAGC--ATTTTG--CTCTCTAGAATGAA i micMur3.chrUn_NW_017968520v1 I 1 C 0 s proCoq1.NW_012140747v1 1883849 1032 + 4188776 AAATTAAAAGGCTGACTGTTCCTAAATAAGAATA-ATGGGG--TTTAAAAAATGGAAGT----TCAATGATATTTGTCAC--GTCTGCATTC--AGGTACTGGGCTGT-ACTTTTAGCAAAACTAAGTC-----TTTAAGAATGTACCATAGGCTCTATTGG-AAAGGACATAAATAATGGAAACTGGAGCCTGGAAAATGGCGAGCTGGCTCAGCTTCTTGGAGCATCATTCATTAGATCCAGCT--GCAAAAGCTAGAAGTTATAAAAAATGCATGCAGGATTTCTTTTTAAGCATTAACACACCACTGCTTT-AAATGTTGGTTCTGACTGAGAAATTCCTCTCTGCAGGTGCTTTTTAC------------------------CCCTAT-AACCTCAGTAAGCTGCCA--------GGAGACTAAACAAATTGCTAGCTTAAAAATTCATTATAGTATCTGTTCCCTTTCCAAGCCATAAAATGTACTCTATAATATTTGCTCTTCTGAAT--CCC--AAGACTTTAATCT-----------TCAAG---GCCCTGTGTGCTTGTATGATGCCA------------TCCCTTTTTCATTGTTAATCTACTGGATAGAGTATTTAAA-------AACACATCATACCCACAAGTCCTAAAAAGGGAAGTGAAAATGCCACTAGTCAACACATTAATTTCCCTGAAATAAGCAATATCAATAGTGATGACAAAGGCGATATCAAAGTG---CTAGACTCCTGGGAAGGAAGCGT------GAAATGCTGAAC-TACATAGTTTGCATTTACCAACAGATGTTGGCAAATGAATGATAAGATCCAGGGACATGAATTCACTGTTAG--AAGTCCATGAAC-AGAGAAATTCGATTTCATACAGCTATG-AAGA-TAACGTAAAATTATCAAGGATATAATAAAAAAGCATGA----TGTTCAG-GATTACTTTGGAAATATAAAGACTAACTAGCCACCTGGGCAAAGGCTCAGACA--TAATACAGATGAAGCAGGTGACTGCTTACCTTAACACATTTCAAAGACTCAT--AA--AAAGGAAGCATGAACCCAAAT----TGGCTGT--AACTTAAACAGG-CCCAGT-CAAGC--ATTTTG--CTCTCTAGAATGCA i proCoq1.NW_012140747v1 I 1 C 0 s otoGar3.GL873602 8628532 991 + 8790067 aaGTTAAAGGATTGACTGTTCCTAAACAAGAAGA-GTCGGG--TTTAAAGAAAGGAGGC----TTAATGATGTTTGGTACATGTCTGCATTC--AGGTACTGGGCTAT-ATGTTTAGCAAAATTAAGTC-----TTTAAGAATGTGCCATGGGCTCTATTGG-AAAGGACATAAATAATGGAAACTGGAGCCTGGGAAATGGCAAACTGGCTCA-CTTCTTGGAACATCATTCATTAGATCCAGCT--GCAAAAGCTATAAGTTATAAAAAATGCATG-AGGATTTCTTTTTAAACATTAACTCACTGCTACTTT-AAATGTTGGTTCTGACTGAGAAATTCCTCTCTGCAGGTGCCTTTTAC------------------------CCCTGTCAACCTCTGTAAGCTGCCA-GGCCTCGGGAGACTAAACAAATTGCTAACTTAAAAATTCATTATAGTATCAGGTCCCCTTCCAAGACATAAAATGTACTCTATAACAGTTGCTCTTCTGAGT--CCC--AAGACCTTAATTG-----------TCAAG---GCTCCATGTGCTTGCATGATGCCA------------TCTCTTTTCCATTGTTAATCTACTGGATAGAGTTTTTAAA-------AACACATCACACCCATAAATCCTAAAAAGAGCAGTGAAAATACCACTAGCC--------AATTTGCCTGAAATAAGAAATAGCTATTGTTATGACAATAGTGATATCAAAGCA---TTAGACTCCTGGGAAGGAAGTGT------GAAGTGCTAAATGTATATAGTCTGCATTTATCAACAGATAGTAGCAAGTGAGTGATAAGATCCATGGGCATGAATTCA---------------------------------ATTTCATGCAGATATG-AAGA-TAACATTAAATTATCAAGGATATAATTGAAAAGT---A----TGTTCAGAAATTATTTTGAAAATATGAAG----AGTAGCCACTTGGACAAAAGCCCAGACT--TA--ATAAATAAAGCAGGTGACTG-----CTTAACACATTTCAAAGACCTAT--AA--GAAAGGCCTATGAACTCAAGA----TGGTTATACAACTTAAATAAG-CCCAAT-CAAGA--ATTTTG--TTCTC-Aggctggg i otoGar3.GL873602 I 268 I 5660 s mm10.chr5 76429476 880 + 151834684 AAGCTAAACGGCTAAGTATTCATAAATAA----A-ATGGAG-----------------C----CTGGCCACAGTTGACTCATACTTCCATTC--AGGCATGAGGCTG-AACTTCCAGCAAAACTAAGTCTTTGATTTAAGAGTGTGCCATGGGCTCAGTTGG-GAAGCATATAAATAATGAACGCTGGAGGCTGGAGAACGGCAAGCTGGTACAATCTC----------ATTCATCAGACCCAGCT--GCAAACAGGGAAGCTGATGACAAATGCACACAGGGGTTCTTTTTAAGCATTAACACATTGCTACTTTAAAACATCAGTTCTGACTGAGAAATTCCTCTCTGCAGGTACTTTTTTTTTTTTTTTACACTCCCCGCCCCCGCCCCAT-AACCTTAGCACATTGCCAGGGCCTCTGGAGACTAAACAAATTGCTAACTTAAAAATTCATTATAGCATCTGCTCCCTTTCCAAGACATAAATTCCACTCGATAGCATTTGCTCTTCTGGAT--CCA--AAGACTGTAATCA-----------TCAAAGATGCATCTTGTCCATTTAAAAATCTACTAGATATCGTTTTTGTTTTTTATTTTT------------------TTTAAACACACACACCACACCACACCCAGAAGTCTT-AAATGGGAAGTGAAAACACCCCTAGCCAGCATGTTCACTTGCGCCAGATAAGCAACATCAATAGTGATGACCAGGGTGGCGCCTGGTCAGGGCCTGCTTCTTGGGAAGGAACTAT------AGAGTGCT-----TC--TAGTCTGCATGTA--------GGCTAGCAGAATGACAATATGATCCAAGGCCCAGAG-TCACTGTTAG--AAGTTCATATTCAAAAGAAACGTAATTCCATGTAGCTGTG------------------------------------------------------------------------CAAAA----CCTAAC-------------------------------------------------------------------------------------------ATTACCCTGAGA----TGGATAG--AACTCGCGTGTGTCCCAGG---AGA--CATTGG--CTCTCTAGAGTAGG i mm10.chr5 C 0 C 0 s canFam3.chr13 48015640 1042 + 63241923 AAGTTAAATCACTGAATATTCCTAAATAAGAATA-GCAAGATTAAAAAAAAAAAAAAGTAGACTCCATGGCATTTGCCACATGCCTCCATTCTAAGGTCCTAGT-----ACTTATAGCAAACCT--GTCATTAATTTAAGAATGTGTCATAGGCTTTATTGGAAAAAAACATAAATAATGTAAAGTGAAGCCTAGACAATGGCAAGCTGGCTCAACCTCTCAAAGCATCATTTGTTAGATCCAGCTGCTCAAAAGCTAGAAGCTATAAAAAATGTATGCGGGACTTCTTTTTAAGCATTAACACAGCACTACTTT-AAATGTTGGTTCTGACTGAGAAATTCCTCTCTGCAGGTGC-TTTTAC------------------------CCCCAT-AACCTCAGCAAGCTGCCAGGGCCTCAGGAGACTAAACAAATTGCTAACTTAAAAATTCATTATAGTATCTGTTCCCTTTCCAAGACATAAAATGTACTCTATA--ATTTGCTCTTCTGAATCCCCT--GAGACCTTGGTCT-----------TCAAG---TCCCCGTGTGCTTGTATGACGCCA------------TCTCTTGTCCATTATTAATATACTAGATAGGCTTTTTAAA-------AACACATCACACCCAAAAGTCCTAAAATGGGAAGTAAAAATGTCACTAGCCAGCACATTAATTTCCCTGAAGTAAACAATAGCAAAAGTGATGACAAAGGT-ATACTAACACA---CTAGGTTCCTGGCATGGAAGTT-------GAACAGTTCAAC-TCTACAGCTTGCATTTGCCAACAGATGGTGACAAATGGATGATGAGGTCCAGGGGCAGGA-------GTCAGGAGAGCCCATGAACAAAAGAAATTCAATTCTGTGCAGTTACA-AAAAGTAATGTAAAATTATCAGGGATATATATAAAAAGTAGGAGTTTTAGGTAGGCATTATT----AAAAAAAAAA----ATCAGCCATCCAAGTAAAGGCCAAGACTCATACTACAGACAAAGCAGGTAGCTGCTTACCTTCTCACATTTCAAAGACTTTCAGAA--AAAGGGCACATAAACCCAAGA----TGGTTAC--GACTCAAAAAAG-CCAAGT-CAAGATGCTTCTA---------GAATGAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4107587 1010 - 5279953 ---------------CTATTCCTAAATAAGGATA-GTAGGG--TTTAAAAAGTGGAGGC----ACAATGACATTTTCCACATGCCCCCATTC--AGGTACTGGACTGT-GCTTTTAGCAAAACTAAGTCTTTAATTTAACAATATGCCATAGACTTTATTGG-AAAGGACATAAATAATGGAAGCTGGAGCCCAGAAAATTGCAAGCTGGCTCAACCTCTTGGAGCACCATTCATTAGATCCAGCT--GCAAAAGCTAGAAGTTATAAAAAATGCATGGAGAATTTCTTTTTAGGCATTAACACACCACTACTTT-AAATGTCTGTTCTGACTGAGAAATTCCTCTCTGCAGGTGCTTTTTAT------------------------TCCCAT-AACCTCAGCAAGCTGCCAGGGCCTCAGGAGACTAAACAAATTGCTAACTTAAAAATTCATTATAGTATCTATTCCCTTTCCAAGACATAAAATGTACTCTATAATATTTGCTCTTCTGAAT--CCCCAGAGACCATAATCT-----------TCAGT---GCCCCTTCTGCTTGCATGACGCCA------------TCTCTTGTCCATTATTAATATATTGGACAGTT--TGTAAG-------AACATATCACACCCAACAATCTTAAAATGAGAAGTGAAAATGCCACTAGCCAGCACATTAATTTCCCTGAAATAAGCAATATCAGTAGTGATGACAAAG---ATATCAATGCA---CTGTACTGCTGGGAAGGAAGTGT-------------TAAAA-TTCTTAGTTGGTATTTACCAATAGATGGTGGCAAATGGATAGAAAGATCTAGGGACACG---------------AAATCCATGAATAAAAGAAATTCAACTTCATGCAGCTATGGAAAA-TAACA-AAACTTATCAGGGCTATAACACAAAAGTGTGAAGTTTAAATAGGTATTATTTTCAAAATATAGAG----GTTGGCCATCTGGGCAAAGGGCCAGACT--TAGAGCAGATAAAGCTGGTGAATGCTTACTTTACCACAT-TCAAGGACTCTC--AAGGAAAAGGCCTACTATCTAAAGGTGGTTGGTTAT--TACTCAAATATG-CCAAGT-CAAGA--GTTTTT--CTCTTTGG------ i dasNov3.JH568349 C 0 C 0 a score=1275638.000000 s hg38.chr4_KI270787v1_alt 79646 98 + 111943 CAC---AT-AGAAAAAGA-AGGAAACGAGCAACCAGAATGAAGGAAA-------------------CTGACCCAGCCAAAGAGCAAAGAGGAATTCCTGAGAAAGTGATAAAAGA-GTGAAAA s panTro5.chr4 119644272 98 - 194502333 CAC---AT-AGAAAAAGA-AGGAAACGAGCAACCAGAATGAAGGAAA-------------------CTGACCCAGCCAAAGAGCAAAGAGGGATTCCTGAGAAAGTGATAAAAGA-GTGAAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121057707 98 - 195804263 CAC---AT-AGAAAAAGA-AGGAAACGAGCAACCAGAATGAAGGAAA-------------------CTGACCCAGCCAAAGAGCAAAGAGGGATTCCTGAGAAAGTGATAAAAGA-GTGAAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4488946 98 - 17550833 CAC---AT-AGAAAAAGA-AGGAAACGAGCAACCAGAATGAAGGAAA-------------------CTGACCCAGCCAAAGAGCAAAGAGGGATTCCTCAGAAAGTGATAAAAGA-GTGAAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69359085 98 - 118206036 CAC---AT-AGAAAAAGA-AGGAAACGAGCAACCAGAATGAAGGAAA-------------------CTGACCCAGCCAAAGAGCAAAAGGGGATTCCTGAGAAAGTGATAAAAGA-GTGAAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111571497 98 - 190429646 CAC---AT-AGAAAAAGA-AGGAAACGAGCAACCAGAATGAAGGAAA-------------------CTAACTCAGCCGAAGAGCAAAGAGGGATTCCAGAGAAAGTGATAAAAGA-GTGAAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110740682 98 - 189454096 CAC---AT-AGAAAAAGA-AGGAAACGAGCAACCAGAATGAAGGAAA-------------------CTAACTCAGCCGAAGAGCAAAGAGGGATTCCTGAGAAAGTGATAAAAGA-GTGAAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13307184 98 + 26754465 CAC---AT-AGAAAAAGA-AGGAAACGAGCAACCAGAATGAAGGAAA-------------------CTAACTCAGCCGAAGAGCAAAGAGGGATTCCTGAGAAAGTGATAAAAGG-GTGAAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4208713 98 - 5137665 CAC---AT-AGAAAAAGA-AGGAAATGAGCAACCAGAATGAAGGAAA-------------------CTAACTCAGCCGAAGAGCAAAGAGGGATTCCTGAGAAAGTGATAAAAGA-GTGAAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122918617 98 - 135778131 CAC---AT-AGAAAAAGA-AGGGAACGAGCAACCAGAATGAAGGAAA-------------------CTAACTCAGCCGAAGAGCAAAGAGGGATTCCTGAGGAAGTGATAAAAGA-GTGAAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2030406 98 + 2427316 CAC---AT-AGAAAAAGA-AGGAAATGAGCAACCAGAATGAAGGAAG-------------------CTAACTCAGCCGAAGAGCAAAGAGGGATTCCTGAGAAAGTGATAAAAGA-GTGAAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1325984 98 + 1448899 CAC---AT-AGAAAAAGA-AGGAAACGAGCGACCAGAATGAAGGAAA-------------------CCGACCCAGCCAAAGAGCAAAGAGGGATTCCTGAGAAAGTGATAAAAGA-GTGAAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53034101 98 - 190850796 CAC---AT-GGAAAAAGA-GGGAAATGAACACCCAGAATGAAGGAAA-------------------CTGACACTGCCCACGAGCAAAGAGGGATTCCTGAGAAAGTGATAAAAGA-GTGAAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8194183 98 - 15139346 CAC---AC-AGAAAAAGA-GGAAAATGAACACCCAGAATGAAAGAAA-------------------CTCACACTGCTAATGAGCAAAGACGGATTCCTGAGAAAGTGATAAAAGA-GTAAAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6978635 98 - 7304997 CAC---AT-AGAAAAAGA-AGGAAATGAACACCCAGAATGAAGGCAA-------------------CTGACACTGCTAATGAGCAAAGATGGATTCCTAAGAAAGTGATAAAAGA-GTAAAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9395904 96 - 11631747 CAC---GT-AGAAAAAGA-AGGGAATGAACACCCAGAATGAAGGAAA-------------------CTGACACTGCCAATGAGCAGAG--GGATTCCTGAGAAAGTGATAAAAGA-GTAAAAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1794520 99 + 3286835 CAC---ATAAGAAAAGGA-AGGAAACCAGCCTCTGGAACCAGGGAAA-------------------CTGACCCAGCCAAAGAGCAAAGAAGGATTCCTGAGAAAGTGATAAAAGA-GTGAAAA i micMur3.chrUn_NW_017968520v1 C 0 I 266 s proCoq1.NW_012140747v1 1884881 120 + 4188776 CATATAATAAGAAAAGGA-AGGAAACCAGCCTCCGGAACCAGGGAAAGAACAAGGAAAGATTGTCTTTGACCCAGCCAAAGAACAAAGAAGGATTCCTGAGAAAGTGATAAAAGA-GTGAAA- i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76430356 93 + 151834684 CGC---GTGGGAAGAGGC-AGAAAGTGGGCACCCAGCTCCAAGGAGA-------------------CAGGCCCAGC---AGAACTACGAAGGGCCACTGAGAAAGGGATAAA----GTAAAAA i mm10.chr5 C 0 I 1 s canFam3.chr13 48016682 95 + 63241923 CCC---AA-GGAAAAAGGCAGGAGACTAGAACCCAGAACCAGGGAAA-------------------CAGACCCAGTCACAGAGCAGAGTGAAATCCCTGAGAAAG----GAGAGA-GTGAAAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4108597 75 - 5279953 -------------GAAAG-AGGAAGCTAACATCTAGA--------------------------------ACCCAGCCACGGAGCAAGGAGGGATTTTTAAGAAAGTGAGAATATATGTGAA-- i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8629523 5660 + 8790067 I a score=551204.000000 s hg38.chr4_KI270787v1_alt 79744 47 + 111943 ATAGAGGTTATTGACATTATTTCATTTTAAAATAATTCCTTAGGGTG s panTro5.chr4 119644370 47 - 194502333 ATAGAGGTTATTGACATTATTTTATTTTAAAATAATTCCTTAGGGTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121057805 47 - 195804263 ATAGAGGTTATTGACATTATTTTATTTTAAAATAATTCCTTAGGGTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4489044 47 - 17550833 ATAGAGGTTATTGACATTATTTTATTTTAAAATAATTCCTTAGGGTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69359183 47 - 118206036 ATAGAGGTTATTGACATTATTTTATTTTAAAATAATCCCTTAGGGTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111571595 47 - 190429646 ATAGAGGTTATTGGTATTATTTTATTTTAAAATAATCCCTTAGGGTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110740780 47 - 189454096 ATAGAGGTTATTGGTATTATTTTATTTTAAAATAATCCCTTAGGGTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13307282 47 + 26754465 ATAGAGGTTATTGGTATTATTTTATTTTAAAATAATCCCTTAGGGTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4208811 47 - 5137665 ATAGAGGTTATTGGCATTACTTTATTTTAAAATAATCCCTTAGGGTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122918715 47 - 135778131 ATAGAGGTTATTGGCATTATTTTATTTTAAAATAATCCCTTAGGGTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2030504 47 + 2427316 ATAGAGGTTATTGGCATTATTTTATTTTAAAATAATCCCTTAGGGTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1326082 47 + 1448899 ATAGAGGTTATTGACATTATTTTATTTTAAAATAATCCCTTAGGGTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53034199 47 - 190850796 ATAGAAGTCATCAACattattttattttaaaataatCCCTTAGGGTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8194281 47 - 15139346 ACAGAAGTTGTTGACattattttattttaaaataatCCCTTAGGGTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6978733 47 - 7304997 ACAGAACTTATAGACATTATTTTATTTTAAAATAATCCCTTAGGGTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9396000 47 - 11631747 ATAGAAGTTATTGACATTATTTTATTTTAAAATAATCCCTTAGGGTA i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1885001 42 + 4188776 ATGGGGGTTATTGATATT-----ATTTTTAAATAAATTCTTGGATTC i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76430450 46 + 151834684 TGGGGAATAGTTGATATTCCTTTGTTTTAAATAAACCTGTAGCTGT- i mm10.chr5 I 1 C 0 s canFam3.chr13 48016777 42 + 63241923 ATGGGTATTATGGATGTC-----ATTCCAAACTAAGCAGTTGGAGTC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4108672 47 - 5279953 ATGGGGGTTATTGATATTATGTTATTTTTAAATAAATCCATGGAATC i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1794619 266 + 3286835 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=1805656.000000 s hg38.chr4_KI270787v1_alt 79791 126 + 111943 TAGGTCATGATTAAGAACCAGCTTTTCTTTCTCAGAAAACTTGGGGCTGAATTCCTAAGTGAATTCAGTTCAAAGTATTTGTCTAAAATTTAGTCTGT-GGCA-AATATAGTAGAAATGGGTTAAATG s panTro5.chr4 119644417 126 - 194502333 TAGGTCATGATTAAGAACCAGCTTTTCTTTCTCAGAAAACTTGGGGCTGAATTCCTAAGTGAATTCAGTTCAAAGTATTTGTCTAAAATTTAGTCTGT-GGCA-AATATAGTAGAAATGGGTTAAATG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121057852 126 - 195804263 TAGGTCATGATTAAGAACCAGCTTTTCTTTCTCAGAAAACTTGGGGCTGAATTCCTAAGTGAATTCAGTTCAAAGTATTTGTCTAAAATTTAGTCTGT-GGCA-AATATAGTAGAAATGGGTTAAATG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4489091 125 - 17550833 TAGGTCATGATTAAGAACCAGCTTTTCTTTCTCAGAAAACTTGGGGCTGAATTCCTAAGTGAATTCAGTTCAAAGTATTTGTCTAAAATTTAGTCTGT-GGCA-AATA-AGTAGAAATGGGTTAAATG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69359230 124 - 118206036 TAGGTCATGATTAAGAACCAGCTTTTCTTTCTCAGAAAACTTGGGGCTGAATCCCTAAGTGAATTCAGTTCAAAGTACTTGTCTAAAATTTAGTC--T-GGCA-AATATAGTAGAAATGTGTTAAATG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111571642 126 - 190429646 TAGATCATGATTAAGAACCAGATTTTCTTTCTCAGAAAACTTGGGGCTGAATTCCTAAGTGAACTCACTTCAAAGTACTTGTCTAAAATTTAGTCTGT-GGCA-AATATAGTAGAAATGAGTTAAATG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110740827 126 - 189454096 TAGATCATGATTAAGAACCAGATTTTCTTTCTCAGAAAACTTGGGGCTGAATTCCTAAGTGAATTCACTTCAAAGTACTTGTCTAAAATTTAGTCTGT-GGCA-AATATAGTAGAAATGAGTTAAATG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13307329 126 + 26754465 TAGATCATGATTAAGAACCAGATTTTCTTTCTCAGAAAACTTAGGGCTGAATTCCTAAGTGAATTCACTTCAAAGTACTTGTCTAAAATTTAGTCTGT-GGCA-AATATAGTAGAAATGAGTTAAATG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4208858 126 - 5137665 TAGATCATGATTAAGAACCAGATTTTCTTTCTCAGAAAACTTGGGGCTGAATTCCTAAGTGAATTCACTTCAAAGTACTTGTCTAAAATTTAGTCTGT-GGCA-AATATAGTAGAAATGAGTTAAATG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122918762 126 - 135778131 TAGATCATGATTAAGAACCAGATTTTCTTTCTCAGAAAACTTGGGGCTGAATTCCTAAGTGAATTCACTTCAAAGTACTTGTCTAAAATTTAGTCTGT-GGCA-AATATAGTAGAAATGAGTTAAATG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2030551 126 + 2427316 TAGATCATGATTAAGAACCAGATTTTCTTTCTCAGAAAACTTGGGGCTGAATTCCTAAGTGAATTCACTTCAAAGTACTTGTCTAAAATTTAGTCTGT-GGCA-AATATAGTAGAAATGAGTTAAATG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1326129 126 + 1448899 TAGATCATGATTAAGAACCAGATTTTCTTTCTCAGAAAACTTGGGGCTGAATTCCTAAGTGAATTCACTTCAAAGTACTCGTCTAAAATTTAGTCTGT-GGCA-AATATAGTAGAAATGAGTCAAATG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53034246 125 - 190850796 TAGGTCATGATTAAGAACCAGATTTTCTTTCTCAGAAAACTTGGGGGTGAATTCCTAAGTGAATTCAGTTCAAAGTACTTGTCTAAAATTTAGTCTGT-GGCA-AATATAGTAGAAATGAGTTAAG-C i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8194328 124 - 15139346 TAGGTCATGATTTAGAGCCAGATATTCTTTCTCAGAAAACTCGGGGCTGAATTCCTAAGTGAAATAAGTTC-AAGTCCTTGTCTAAAATTTAGTCTGT-GGCA-AATATAGTAGAAATTAGTTAAA-G i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6978780 125 - 7304997 TAGGTCATGATTAAGAACCAGATTTTCTTTCTCAGAAAACTTGGGGCTAAATTCCTAAGTGAAATAAGTTCAAAGCACTTGTCTAAAATTTAGTCTGT-GGCA-AATATAGTAGAAATGAGTTAAG-G i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9396047 125 - 11631747 TAGGTCATGATTTAGAACCAGATTTTCTTTCTCAGAAAACTTGAGGGTGAATTCCTAAGGGAATTCAGCTCAAAGTACTTGTCTAAAATTTAGTCTGT-GGCA-AATATAGTATAAACGAGTTAAG-G i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1794885 115 + 3286835 TAGGTCATGATTAAGAACCAGATTTTCTTTCTCTGAGAGTCTGGGGCTGAATTC------------AGCTCAAAGAACTTGTCTTAAATGTAGTCCTTGGGCA-AATATAGTAGAAATGGATTAAATG i micMur3.chrUn_NW_017968520v1 I 266 I 30 s proCoq1.NW_012140747v1 1885043 115 + 4188776 TAGGTCATGATTAAGAACTAGATTTTCTTTCTCTGAGAACCTGGGGCTGAATTC------------AGTTCAAAGAACTTGTCTAAAATTTAGTCCTTGGGCA-AATATAGTAGAAATGGATTAAATG i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76430496 127 + 151834684 CAGGCCATGGTTAAGAACTAGACTTTCTTTCTCTGGTTGCTTGAAGCTAAATTCCCAACTGACTTTAGTTCCAAGCACCTCTCAAGAACATAGTCCAT-AGAATAATATAGCAGAGGTGGGTATAATA i mm10.chr5 C 0 C 0 s canFam3.chr13 48016819 113 + 63241923 TAGGTTGTGACTAATAACCAGAT-TTCTTTCTCTGAAAGCTTGGGTCTGAATTC------------AGTTCAAAATATTTCCCTAAAATTTAGTCAATAAGCA-AATATAGTAGA-ATGGATTAAATG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4108719 123 - 5279953 TAGGTCATAAATAAGAACCAGATGTTCGTTCTCTCAAAGCTTGAGTCTGAATTCCTGAGT----TCAGTTCAAAACACTTCTCTAAACTTTAGTCCAT-AGTAAAATACAGTAGAAATGGATCAAATG i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8629523 5660 + 8790067 I a score=274918.000000 s hg38.chr4_KI270787v1_alt 79917 24 + 111943 AATTAAAGAATT--GAAAGGACTAAC s panTro5.chr4 119644543 24 - 194502333 AATTAAGAAATT--GAAAGGACTAGC i panTro5.chr4 C 0 I 1 s panPan2.chr4 121057978 24 - 195804263 AATTAAGAAATT--GAAAGGACTAGC i panPan2.chr4 C 0 I 1 s gorGor5.CYUI01014963v1 4489216 24 - 17550833 AATTAAGGAATT--GAAAGGACTAAC i gorGor5.CYUI01014963v1 C 0 I 1 s nomLeu3.chr9 69359354 24 - 118206036 AATTAAGGAATT--GAAAGGACTAAT i nomLeu3.chr9 C 0 I 1 s rheMac8.chr5 111571768 24 - 190429646 AATTAAGGAATT--GAAAGGACTAAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110740953 24 - 189454096 AATTAAGGAATT--GAAAGGACTAAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13307455 24 + 26754465 AATTAAGGAATT--GAAAGGACTAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4208984 24 - 5137665 AAATAAGGAATT--GAAAGGACTAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122918888 24 - 135778131 AATTAAGGAATT--GAAAGGACTAAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2030677 24 + 2427316 AATTAAGGAATT--GAAAGGACTAAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1326255 24 + 1448899 AATTAAGGAATT--GAAAGGACTAAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53034371 24 - 190850796 GATGAAGGAATT--GAAAGACCTAAA i calJac3.chr3 C 0 I 2 s saiBol1.JH378162 8194452 24 - 15139346 GATGAAGGAACT--GAAAGGCCTAAA i saiBol1.JH378162 C 0 I 2 s cebCap1.NW_016107439v1 6978905 24 - 7304997 GATGAAGGAACT--GAAAGACCTAAA i cebCap1.NW_016107439v1 C 0 I 2 s aotNan1.NW_018493494v1 9396172 24 - 11631747 GATGAAGGAATT--GAAAGACCTAAA i aotNan1.NW_018493494v1 C 0 I 2 s proCoq1.NW_012140747v1 1885158 24 + 4188776 GTTAAAGGAATT--AAAAGGCCTAAT i proCoq1.NW_012140747v1 C 0 I 7 s mm10.chr5 76430623 23 + 151834684 AATGAAGGAATT--AGAA-ACCTAAT i mm10.chr5 C 0 I 12 s canFam3.chr13 48016932 24 + 63241923 GATGAAAGAATG--GAAAGGCCTAAC i canFam3.chr13 C 0 I 5 s dasNov3.JH568349 4108842 22 - 5279953 ----GATGAATTTGGGAAAGACTAAC i dasNov3.JH568349 C 0 I 5 e micMur3.chrUn_NW_017968520v1 1795000 30 + 3286835 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=804979.000000 s hg38.chr4_KI270787v1_alt 79941 60 + 111943 AAAAAATCATAGATTATTTATGGATAATGTTTCTGTTC-------------TAAAGAAATATAGCACTT--TTTT s panTro5.chr4 119644568 60 - 194502333 AAAAAATCATAGATTATTTATGGATAATGTTTCTGTTC-------------TAAAGAAATATAGCACTT--TTTT i panTro5.chr4 I 1 C 0 s panPan2.chr4 121058003 60 - 195804263 AAAAAATCATAGATTATATATGGATAATGTTTCTGTTC-------------TAAAGAAATATAGCACTT--TTTT i panPan2.chr4 I 1 C 0 s gorGor5.CYUI01014963v1 4489241 60 - 17550833 AAAAAATCACAGATTATTTATGGATAATGTTTCTGTTC-------------TAAAGAAATATAGCACTT--TTTT i gorGor5.CYUI01014963v1 I 1 C 0 s nomLeu3.chr9 69359379 56 - 118206036 AAAA----ATAGATTATTTATGGATAATGTTTCTGTTC-------------TAAAGAAATATAGCACTT--TTTT i nomLeu3.chr9 I 1 C 0 s rheMac8.chr5 111571792 60 - 190429646 AAAAAATCATAGATTATTTATGGATAATGTTTCTGTTC-------------TAAACAAATACAGTACTT--TTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110740977 60 - 189454096 AAAAAATCATAGATTATTTATGGATAATGTTTCTGTTC-------------TAAACAAATACAGTACTT--TTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13307479 60 + 26754465 AAAAAATCATAGATTATTTATGGATAATGTTTCTGTTC-------------TAAACAAATACAGTACTT--TTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4209008 60 - 5137665 AAAAAATCATAGATTATTTATGGATAATGTTTCTGTTC-------------TAAACAAATACAGTACTT--TTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122918912 60 - 135778131 AAAAAATCATAGATTATTTATGGATAATGTTTCTGTTC-------------TAAACAAATACAGTACTT--TTTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2030701 60 + 2427316 AAAAAATCATAGATTATTTATGGATAATGTTTCTGTTC-------------TAAACAAATACAGTACTT--TTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1326279 60 + 1448899 AAAAAATCATAGATTATTTATGGATAATGATTCTGTTC-------------TAAAGAAATATAGTACTT--TTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53034397 59 - 190850796 AAAAATTTGTAGATTATTTATGGATAATGTTTCCATTC-------------TAAAGAAATATAGCACTT---TTT i calJac3.chr3 I 2 C 0 s saiBol1.JH378162 8194478 60 - 15139346 AAAAATTCATAGATTATTTATGCATAATGTTTCCATTC-------------TAAAGAAATATGGCACTT--GTTT i saiBol1.JH378162 I 2 C 0 s cebCap1.NW_016107439v1 6978931 57 - 7304997 AAAAGTTCATAGATTATTTATGC---ATGTTTCCATTC-------------TAAAGAAATATAGCACTT--TTTT i cebCap1.NW_016107439v1 I 2 C 0 s aotNan1.NW_018493494v1 9396198 60 - 11631747 AAAAAATCATAGATTATTTATGGATAATGTTTCCATTC-------------TAAAGAAATATAGCACTT--TTTT i aotNan1.NW_018493494v1 I 2 C 0 s micMur3.chrUn_NW_017968520v1 1795030 62 + 3286835 AAAAATTCATGGATTATTTACAGATAATGTTCCTGTTA-------------TAAAGAAATACAGCACTTTTTTTT i micMur3.chrUn_NW_017968520v1 I 30 C 0 s proCoq1.NW_012140747v1 1885189 58 + 4188776 AAAAATTCATGGATTATTT----ATAATGTTCCTGTTC-------------TAAAGAAATGCAGCACTTGTTTTT i proCoq1.NW_012140747v1 I 7 C 0 s mm10.chr5 76430658 59 + 151834684 AAAAGCCCACAGATTACTAATGGATAATATTG-TGTTC-------------TAACAAAATGGAATGCTT--Ttct i mm10.chr5 I 12 I 221 s canFam3.chr13 48016961 67 + 63241923 AAAAATCCATGGATTATTTAAAGATAGTGtttcttttcttttctttttttttAAAGA------GCACTT--TTTG i canFam3.chr13 I 5 C 0 s dasNov3.JH568349 4108869 60 - 5279953 AAAAATTCCTGGGTTATTTGTAAATAATATTTCTGTCC-------------TAAAGGAACGTAACACAT--TAAT i dasNov3.JH568349 I 5 C 0 e otoGar3.GL873602 8629523 5660 + 8790067 I a score=743613.000000 s hg38.chr4_KI270787v1_alt 80001 64 + 111943 GAACGC------------------AGTAAGAG--------------------------------------------------------AACAGAGGCAAAGAGAACAATTTGATTAGACAGAGTTAC------AAGAAAAGCCC s panTro5.chr4 119644628 64 - 194502333 GAACGC------------------AGTAAGAG--------------------------------------------------------AACAGAGGCAAAGAGAACAATTTGATTAGACAGAGTTAC------AAGAAAAGCCC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121058063 64 - 195804263 GAACGC------------------AGTAAGAG--------------------------------------------------------AACAGAGGCAAAGAGAACAATTTGATTAGACAGAGTTAC------AAGAAAAGCCC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4489301 64 - 17550833 GAACGC------------------AGTAAGAG--------------------------------------------------------AATAGAGGCAAAGAGAACAATTTGATTAGACAGAGTTAC------AAGAAAAGCCC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69359435 64 - 118206036 GAATGC------------------AGTAAGAG--------------------------------------------------------AACAGAGGCAAAGAGAACAATTTGATTAGACAGAGTTAC------AAGAAAAGCCC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111571852 64 - 190429646 GAATGC------------------GGTAAGAG--------------------------------------------------------AACAAAGGCAAAGAGAACAATTTGGTTTGACAGAGTTAC------AAGAAAAGCCC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110741037 64 - 189454096 GAATGC------------------GGTAAGAG--------------------------------------------------------AACAAAGGCAAAGAGAACAATTTGGTTTGACAGAGTTAC------AAGAAAAGCCC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13307539 64 + 26754465 GAATGC------------------GGTAAGAG--------------------------------------------------------AACAAAGGCAAAGAGAACAATTTGGTTTGACAGAGTTAC------AAGAAAAGCCC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4209068 64 - 5137665 GAATGC------------------GGTAAGAG--------------------------------------------------------AACAAAGGCAAAGAGAACAATTTGGTTTGACAGAGTTAC------AAGAAAAGCCC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122918972 64 - 135778131 GAATGA------------------AGTAAGAG--------------------------------------------------------AACAAAGGCAAAGAGAACAATTTGGTTTGACAGAGTTAC------AAGAAAAGCCC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2030761 64 + 2427316 GAATGC------------------GGTAAGAG--------------------------------------------------------AACAAAGGCAAAGAGAACAATTTGGTTTGACAGCGTTAC------AAGAAAAGCCC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1326339 62 + 1448899 GAATGC------------------AGTA--AG--------------------------------------------------------AACAAAGGCAAAGAAAACAATTTGGTTTGACAGAGTTAC------AAGAAAAGCCC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53034456 59 - 190850796 GAATGC------------------AGTGAGAG--------------------------------------------------------AACAGAAGCAAAGAGAACACTTTGTT-----AGAGTTAC------AAGAAAAGCCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8194538 53 - 15139346 GAATGC------------------AGTAAAAG--------------------------------------------------------AACAGAGGCAAAGAGAACAATTT-----------GTTAC------AAGAAAAGCCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6978988 59 - 7304997 GAATGC------------------AATAAGAA--------------------------------------------------------AACAGAGGCAAAGAGAACAAATTGTT-----AGAGTTAC------AAGAAAAGCCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9396258 59 - 11631747 GAATGC------------------AGTGAGAG--------------------------------------------------------AACAGAGGCAAAGAGAACAATTTGTT-----AGAGTTAC------AAGAAAAGCCT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1795092 63 + 3286835 GAATGC------------------AGTGATAG---------------------------------------------------------GTGGAGGCAAGGAAAACAATTTGATTAGATAGAGGTAC------AAGGAAAGCCC i micMur3.chrUn_NW_017968520v1 C 0 I 3 s proCoq1.NW_012140747v1 1885247 62 + 4188776 -AATGC------------------AGTGATAT---------------------------------------------------------GTGGAGGCCAAGAGAACAATTTGATTAGATAGAGGTAC------AAGAAAAGCCC i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76430938 130 + 151834684 GAATGCAGGGCTCCATGGTGTCTAAGTAAGAGCTCTGTTCCTAAGCCACGTTAGCTACCTCCCTCCTTTTTGGATGCAATGACAGATAAGTGGAGGCAAAGAGAACAATGTGATCAGGGCCATCTAT------AAT-------- i mm10.chr5 I 221 C 0 s canFam3.chr13 48017028 62 + 63241923 GAATCC------------------AGTGATAG---------------------------------------------------------ATGGAGGCAAAGAGAACAATTTGATTAGACAGGGGTAC------AAGAAAAGTC- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4108929 66 - 5279953 GTATGA------------------AGTGTTAG---------------------------------------------------------GTGAAGGCA---AGAACAACTTGATTAGGAAGAACAACTTGATTATGAAAAGCCC i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8629523 5660 + 8790067 I a score=13073.000000 s hg38.chr4_KI270787v1_alt 80065 1 + 111943 C s panTro5.chr4 119644692 1 - 194502333 C i panTro5.chr4 C 0 C 0 s panPan2.chr4 121058127 1 - 195804263 C i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4489365 1 - 17550833 T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69359499 1 - 118206036 C i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111571916 1 - 190429646 C i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110741101 1 - 189454096 C i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13307603 1 + 26754465 C i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4209132 1 - 5137665 C i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122919036 1 - 135778131 C i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2030825 1 + 2427316 C i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1326401 1 + 1448899 C i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53034515 1 - 190850796 C i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8194591 1 - 15139346 C i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6979047 1 - 7304997 C i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9396317 1 - 11631747 C i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48017090 1 + 63241923 C i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4108995 1 - 5279953 C i dasNov3.JH568349 C 0 M 285 e proCoq1.NW_012140747v1 1885309 0 + 4188776 C e micMur3.chrUn_NW_017968520v1 1795155 3 + 3286835 I e mm10.chr5 76431068 0 + 151834684 C e otoGar3.GL873602 8629523 5660 + 8790067 I a score=296956.000000 s hg38.chr4_KI270787v1_alt 80066 26 + 111943 CAAAActccaagagtttagccaataa s panTro5.chr4 119644693 26 - 194502333 CAAAActccaagagtttagccaataa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121058128 26 - 195804263 CAAAActccaagagtttagccaataa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4489366 26 - 17550833 CAAAActccgagagtttagccaataa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69359500 26 - 118206036 CAAAActccaagagtttagccaataa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111571917 26 - 190429646 CAAAActctgagagtttagccaataa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110741102 26 - 189454096 CAAAActctgagagtttagccaataa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13307604 26 + 26754465 CAAAActctgagagtttagccaataa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4209133 26 - 5137665 CAAAActctgagagtttagccaataa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122919037 26 - 135778131 CAAAActctgagagtttagccaataa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2030826 26 + 2427316 CAAAActctgagagtttagccaataa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1326402 26 + 1448899 CAAAAccctgagagtttagccaataa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53034516 26 - 190850796 CAAAActccaagagtttagccaataa i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8194592 26 - 15139346 CAAAActccaagagtttagccaataa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6979048 26 - 7304997 CAAAActccaagagtttagccaataa i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9396318 26 - 11631747 CAAAActctaagagtttagccaataa i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1885309 3 + 4188776 ----------------TAG------- i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76431068 21 + 151834684 ---AACTCTGAGAG--TGGCCAGTGG i mm10.chr5 C 0 C 0 s canFam3.chr13 48017091 26 + 63241923 AAGAACACTAAGAGTTTGGCCAGTGA i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1795155 3 + 3286835 I e dasNov3.JH568349 4108996 285 - 5279953 M e otoGar3.GL873602 8629523 5660 + 8790067 I a score=5475142.000000 s hg38.chr4_KI270787v1_alt 80092 419 + 111943 tcataacccattatgaattaaatcagaaataagcaaagtcacttcaaagggatggaatggctaatttaagagtatgatctgactataacttcaccttgatgatattggtatatgtcatgaaagaatgtgtcactcagaagagcaatcagtcTCAAAACACAGGACATGGGGACTT----AGAGTTAGCAATCAGTTCCCAGCACTGGTGAGACACTGAATTTGGAAATACAGTGGCTTCACTCTCGAAGTGCTCTTAGCTACAGGGCTTAGATTTCTACCAGGTAG-CCCCTTGGCCTGGATAAAAGATCCCTTAAAACCACTTACATAACTTTACTTCAATTCTGTCTTCACTTAGCAAGCTCCCAACT----GTTAATTCAACCTCTCAGTCACCCTGATACTGGAAGGGTTCATTAGATGAT----AAA s panTro5.chr4 119644719 419 - 194502333 tcataacccattatgaattaaatcagaaataagcaaagtcacttcaaacggatggaatggctaatttaagagtatgatctgactataacttcaccttgatgatattggtatatgtcatgagagaatgtgtcactcagaagagcaatcagtcTCAAAACACAGGACATGGGGACTT----AGAGTTAGCAATCAGTTCCCAGCACTGGCGAGACACTGAATTTGGAAATACAGTTGCTTCACTCTCGAAGTGCTCTTAGCTACAGGGCTTAGATTTCTACCAGGTAG-CCCCTTGGCCTGGATAAAAGATCCCTTAAAACCACTTACATAACTTTACTTCAATTCTGTCTTCACTTAGCAAGCCCCCAACT----GTTAATTCAACCTCTCAGTCACCCTGATACTGGAAGGGTTCATTAGATGAT----AAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121058154 419 - 195804263 tcataacccattatgaattaaatcagaaataagcaaagtcacttcaaacggatggaatggctaatttaagagtatgatctgactataacttcaccttgatgatattggtatatgtcatgagagaatgtgtcactcagaagagcaatcagtcTCAAAACACAGGACATGGGGACTT----AGAGTTAGCAATCAGTTCCCAGCACTGGCGAGACACTGAATTTGGAAATACAGTTGCTTCACTCTCGAAGTGCTCTTAGTTACAGGGCTTAGATTTCTACCAGGTAG-CCCCTTGGCCTGGATAAAAGATCCCTTAAAACCACTTACATAACTTTACTTCAATTCTGTCTTCACTTAGCAAGCCCCCAACT----GTTAATTCAACCTCTCAGTCACCCTGATACTGGAAGGGTTCATTAGATGAT----AAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4489392 419 - 17550833 tcataacccattatgaattaagtcagaaataagcaaagtcacttcaaagggatggaatggctaatttaagagtatgatctgactataacttcaccttgatgatattggtatatgtcatgagagaatgtgtcactcagaggagCAATCAATCTCAAAACACAGGACATGGGGACTT----AGAGTTAGCAATCAGTTCCCAGCACTGGCGAGACACTGAATTTGGAAATACAGTTGCTTCACTCTCGAAGTGCTCTTAGCTACAGGGCTTAGATTTCTACCAGGTAG-CCCCTTGTCCTGGATAAAAGATCCCTTAAAACCACTTACATAATTTTACTTCAATTCTGTCTTCACTTAGCAAGCCCCCAACT----GTTAATTCAACCTCTCAGTCACCCTGATACTGGAAGGGTTCATTAGATGAT----AAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69359526 427 - 118206036 tcataacccattatgaattaaatcagaaataagcaaagtcacttcaaagggacagaatggctaatttaagagtatgatctgactataacttcaccttgatgatattggtatatgtcatgagagaatgtgtcactcagaagagcaatcagtctcaaaacacaggacatgaagacttagaaagagttagcaatcagttcccagcactgGCGAGACACAGAATCTGGAAACACAGTTGCTTCACTCTTGAAGTGCTCTTAGCTACAGGGCTTAGATTTCTACGAGGCAG-CCCCTTGGCCTGGATAAAAGATCCCTTAAAACCACTTACATAACTTTACTTCAATTCTGTCTTCACTTAGCAACACTCCAACTGTTAGTTAATTCAGCCTCTCAGTCACCCTGATACTGGAAGCGTTCATTAGATGAT----AAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111571943 423 - 190429646 tcataacccattatgaattaaatcagaaataagcgaagtcacttcaaagggacagaatggctaatttaagagtatgatctgactacaacttaaccttgatgatattcatatatgtcatgagaaaatgtgtcactcagaagagcaatcggtcTCAAAACACAGGACATGGGGACTTAGAAAGAGTTAGCAATCAGTACCCAGCTCTGGCGAGCCACTGAAGCTGGAAATACAGTTGCTTCACTCTCGAAGCGCTCTTAGCTACAGGGCTTAGATTTCTACCAGGTAG-CCCCTTGGCCTGGATAAAAGATCCCTTAAAACCACTTACATAACTTTACTTCAATTCTGTCTTCACTTAGCAACCCTCCAACT----GTTAATTCAGCCTCTCAGTCATCCTGATACTGGAATGGTTCATTAGATGAT----AAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110741128 423 - 189454096 tcataacccattatgaattaaatcagaaataagcgaagtcacttcaaagggacagaatggctaatttaagagtatgatctgactacaacttaaccttgatgatattcatatatgtcatgagaaaatgtgtcactcagaagagcaatcggtcTCAAAACACAGGACATGGGGACTTAGAAAGAGTTAGCAATCAGTACCCAGCTCTGGCGAGCCACTGAAGCTGGAAATACAGTTGCTTCACTCTCGAAGCGCTCTTAGCTACAGGGCTTAGATTTCTACCAGGTAG-CCCCTTGGCCTGGATAAAAGATCCCTTAAAACCACTTACATAACTTTACTTCAATTCCGTCTTCACTTAGCAACCCTCCAACT----GTTAATTCAGCCTCTCAGTCATCCTGATACTGGAATGGTTCATTAGATGAT----AAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13307630 423 + 26754465 tcataacccattatgaattaaatcagaaataagcgaagtcacttcaaagggacagagtggctaatttaagagtatgatctgactacaacttaaccttgatgatattcatatatgtcatgagaaaatgtgtcactcagaagagcaatcggtcTCAAAACACAGGACATGGGGACTTAGAAAGAGTTAGCAATCAGTACCCAGCTCTGGCGAGCCACTGAAGCTGGAAATACAGTTGCTTCACTCTCGAAGCGCTCTTAGCTACAAGGCTTAGATTTCTAACAGGTAG-CCCCTTGGCCTGGATAAAAGATCCCTTAAAACCACTTACATAACTTTACTTCAATTCCGTCTTCACTTAGCAACCCTCCAACT----GTTAATTCAGCCTCTCAGTCATCCTGATACTGGAATGGTTCATTAGATGAT----AAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4209159 419 - 5137665 tcataacccattatgaattaaatcagaaataagcgaggtcacttcaaagggatggaatggctaatttaagagtatgatctgactacaacttaaccttgatgatattcatatatgtcatgagaaaatgtgtcactcagaagagcaatcggtcTCAAAACACAGGACATGGGGACTT----AGAGTTAGCAATCAGTACCCAGCTCTGGCGAGCCACTGAAGCTGGAAATAGAGTTGCTTCACTCTCGAAGCGCTCTTAGCTACAGGGCTTAGATTTCTACCAGGTAG-CCCCTTGGCCTGGGTAAAAGATCCCTTAAAACCACTTACATAACTTTACTTCAATTCCGTCTTCACTTAGCAACCCTCCAACT----GTTAATTCAGCCTCTCAGTCATCCTGATACTGGAATGGTTCATTAGATGAT----AAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122919063 422 - 135778131 tcataacccattatgaattaaatcaaaaataagcgaagtcacttcaaagggacggaatggctaatttaagagtatgatctgactacaacttaaccttgatgatattcatatatgtcatgagaaaatgtgtcactcagaagagcaatcggtcTCAAAACACAGGACATGGGGACTTAGAAAGAGTTAGCAATCAGTACCCAGCTCTGGCGAGCCACTGAAGCTGGAAATAC-GTTGCTTCACTCTCGAAGCGCTCTTAGCTACAGGGCTTAGATTTCTACCAGGTAG-CCCCTTGGCCTGGATAAAAGATCCCTTAAAACCACTTACATAACTTTACTTCAATTCTGTCTTCACTTAGCAACCCTCCAACT----GTTAATTCAGCCTCTTAGTCATCCTGATACTGGAATGGTTCATTAGATGAT----AAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2030852 423 + 2427316 tcataacccattatgaattaaatcagaaataagcgaggtcacttcaaagggacggaatggctaatttaagagtatgatctgactacaacttaaccttgatgatattcatgtatgtcatgagaaaatgtgtcactcagaagagcaatcggtcTCAAAACACAGGACATGGGGACTTAGAAAGAGTTAGCAATCAGTACCCAGCTCTGGCGAGCCACTGAAGCTGGAAATACAGTTGCTTCACTCTCGAAGCGCTCTTAGCTACAGGGCTTAGATTTCTACCAGGTAG-CCCCTTGGCCTGGATAAAAGATCCCTTAAAACCACTTACATAACTTTACTTCAATTCTGTCTTCACTTAGCAACCCTCCAACT----GTTAATTCAGCCTCTCAGTCATCCTGATACTGGAATGGTTCATTAGATGAT----AAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1326428 423 + 1448899 tcataacccattatgaattaaatcagaaataagcaaagtcacttcaaagggacggaatggctaatttaagagtatgatctgactacaacttaaccttgatgatattcgtatatgtcatgagaaaatgtgtcacttagaaaagcaatcagtcTCAAAACACAGGACATGGGGACTTAGAAAGAATTAGCAATCAGTACCCAGCTCTGGCAAGACACTGAATCTGGAAATACAGTTGTTTCACTCTCAGAGTGCTCTTAGCTACATGGCTTAGATTTCTACCAGGTAG-CCCCTTGGCCTGGATaaaagatcccttaaaaccacttacataactttacttcaattctgtcttcacttagcaaccttccgact----gttaattcagcctctcAGTCATCCTGATACTGGAATGGTTCATTAGATGAT----AAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53034542 415 - 190850796 tcataactcattatgaattaaatcagaaatcagcaaagtcatttcaaagggacagaatggc-----taagagtatgatctgactataacttaaccttgatgatagtggtatacctcatgagagaatgtgtcactcaga--agTCATTGGCCTCAAAACACAGGACATGGCAACTTAGAAAGAGTTAGCAATCAGCACTCAGCACTGGTGAGACGCTGAATCTGGAAATACAGTTGGTTCACAGTCAAGGTGCTCTTAGCTACCGGGCAT-GATTTCTACCAGGTAG-CCCCTTGACCTGGATAAAAGATCCCTCAAAACCACTTAGGTAACTTTACTTCAATTCTGTCCTCACTTAGCAACTCTCCAACT----GTTAATTCAGCCTCTCAGTCACCCTGATACTGGAACGGTTCATTAGATGAT----AAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8194618 423 - 15139346 tcacaactccttatgaattaaatcacaaataagcaaagtcacttcaaagggatggaatggctaagttaagagtatgatgtgactataacttaaccttgatgatagtggtatatctcatgagagaatgtgtcactcagaagagtaactggcctcaaaacacaggacatggggacttagaaagacttagcaatcagtacccagcactgGTGAGACGCTGAATCAGGAAATACAGTTAGTTCACTGTCAAGGTGCTCTTAGCTACTGGGCTT-GATTTCTACCAGGTAGCCCCCTTGGCCTGGATAAAAGATCCCTTAAAACCACTTACATGCCTTTACTTCAATTCTGTCCTTACTTAGCAACTCTCCAACT----GTTAATTCAGGCTCTCAGTCACCCTGATACTGGAAGGGTTCATTAGATGAT----AAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6979074 423 - 7304997 tcgtaactcattatgaattaaatcagaaataagcaaagtcacatcaaagggacggaatggctaagttaagagtatgatctgactgtaacttaaccttgataatagtggtatatctcatgagagaatgtgtcactcaggagagTAACTGGCCTCAAAACACAGGACATGGGGACTTAGAAAGACTTAGCAATCAGTACCCAGCACTGGTGAGATGCTGAATCTGGAAATACAGTTGGTTCACTGTCAAGGTGCTGTTAGCTACTGGGCTT-GATTTCTACCAGGTAGCCCCCTTGGCCTGGATAAAAGATCCCTTAAAACCACTTACATGACTTTACTTCAATTCTGTCCTTACTTAGCAACTCTCCAACC----GTTAATTCAGGCTCTCAGTCACCCTGATACTGGAAGGGTTCGTTAGATGAT----AAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9396344 413 - 11631747 tcataactcattatgaattagatcagaaataagcaaagtcatttcaaagggacagaatggc-----taagagtatgatctgactataacttaaccttgatgatagtggtatacctcatgagagaatgtgtcactcagaagagtaattggccTCAAAACACAGGACATGGGGACTTAGAG----TTAGCAATCAGTACTCAGCACTGGTGAGACGCTGAATCTGGAAATACAGTTGGTTCACAGTCAAGGTGCTCTTAGCTACTGGGCTT-GACTTCTACCAGGTAG-CCCCTTGgcctgaataaaagatcccttaaaaccacttatgtaactttacttcaattctgtcctcacttagcaactctccaact----gttaattcagcctctcagtcaccctgatactggaagggttcattagatgat----aaa i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1795158 413 + 3286835 TCATaacactttatgagttaaattagaaataagcacagtcacttcaaggagacagaattgc-----taagagcatgatctgactataacttaaccttga-gatatgagcgtatgtgatgagagaatgtgtcagtcggaagagtaatcagcctagaaacacaggaaatggggactt----agagTGAGCAGTAAGTACCTAGCGCTGGTGAGACATAGAATCTAGGGATATGACTGGTTCACTCTACAGGTGTTCCTGGCTATGGGACTTGGATTTACACCAGGTAT-CCCCTTGACCTGGAAGAAAGATTCCTTGAAACCACTTACATAACTTTACTTCAGTTCTGTCTTCACTTAGCAACTCTCTGCCT----GTTAATTCAGCCTTTCAGTCTTCCTGGTACTGAAAGGATTCATTAGATGAT----AAA i micMur3.chrUn_NW_017968520v1 I 3 C 0 s proCoq1.NW_012140747v1 1885312 414 + 4188776 TCATAACCCTTTatgagttaaattagaaataagcaaagtcacttcagagagacagaatggc-----taagagcatgatctgactataccttaaccttgatgatagtagcatatctgatgagagaacatgtcagtcagaagagtaatcagcctagaaacacaggaaatggggactt----agagtgagcagtaagcacccagcactggtgagacgcagaatctggggatatgacaggttcactctggaggtgctcctggctatggggcttggatttacaccagatat-ccccttgaccgggaagaaagattccttgaaaccacttacataactttacttcagttctgtcttcacttagccactctctgact----gttaatttggcctttcagtcttcctgacactgaaaggattcattagatgat----gaa i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76431089 376 + 151834684 CCATAAGTCATCCCAGATTATATGAGAAATAAT----GCCACTTTGAAGAGGC-----------------AGTATGACCTCACTTCAACTTGACCTTGATATTATT---ATAGCTGATGAGA-AATGTGTCACTCGGTGGAGTAACAGCCC------AACCGGAAATGGGTACTCAGA-AAAGTTAGTGATAAAGACCCGCAGC--GTCAGTCAC----------AACAGGATCATGTCTCT-TAGAGGTGC------CTGCAGGGCCTAAATGTACCCCTGCTGT-CCCCACAGCAAGGATAAGAAAGCCCTTGGAACCTTTTACATAAACTCACTTCAATCTTCCCTTCACTTAGCAGCTCTCTGACT----GTGAATTCAGTCTCTCAAGCACCCTAGTACTGGAAGGACTCATTAGGTGATTAAAAAA i mm10.chr5 C 0 C 0 s canFam3.chr13 48017117 345 + 63241923 TCATAATCcattacagatgagatcagagataaacacaatcactttaaagagacagtatggctAAGTTAAGCGTATGATCTGACT--AACTCAATCTTGTTATC--TGGCAGACATGATGAAAGAA--TGTCACTCAGA------------------ACACAGAACCTGCGG------------------------------------------------------GATACGACTGGTTCACTCTAGAGATGCTCTCCGCCACAGGACTTGGATTTATACCAGGCAT-CCCCTTGGCCTGGATAAAAGATCCCTTGAGACTATTTACATAACATTACTTCAATTTTGTCTTCCCTTAGCATCCCTCTGACT----GTGGATTCAGCCTTTCATGCACCCTGATCCAGGAAGGATTCATTAAATGAT----AAA i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4108996 285 - 5279953 M e otoGar3.GL873602 8629523 5660 + 8790067 I a score=1520636.000000 s hg38.chr4_KI270787v1_alt 80511 111 + 111943 AATGAT--AATTTTAGTAACT------GGAAAGAGATATTCTCCATAAAAATTAATAAATCAACAATCAGATTTATACACCATTTGCTCATAAGTTAATATGAACCTGTCTTCTCCTCT s panTro5.chr4 119645138 111 - 194502333 AATGAT--AATTTTAGTAACT------GGAAAGAGATATTCTCCATAAAAATTAATAAATCAACAATCAGATTTATACACCATTTGCTCATAAGTTAATATGAACCTGTCTTCTCCTCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121058573 111 - 195804263 AATGAT--AATTTTAGTAACT------GGAAAGAGATATTCTCCATAAAAATTAATAAATCAACAATCAGATTTATACACCATTTGCTCATAAGTTAATATGAACCTGTCTTCTCCTCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4489811 111 - 17550833 AATGAT--AATTTTAGTAACT------GGAAAGAGATATTCTCCATAAAAATTAATAAATCAACAATCAGATTTATACACCATTTGCTCATAAGTTAATATGAACCTGTCTTCTCCTCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69359953 111 - 118206036 AATGAT--AATTTTAGTAACT------GGAAAGAGATATTCTCCATAGAAATTAATAAATCAACAATCAGATTTATACACCATTTGCTCATAAGTTAATATGAACCTGTCTTCTCCTCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111572366 109 - 190429646 AATGAT--TATTTTGGTAAC--------GAAGGAGATATTCTCCATAGAAATTAATAAATCAACAATCAGATTTATACACCATTTGTTCAAAAGTTAATATGAAACTGTCTTCTCCTCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110741551 109 - 189454096 AATGAT--TATTTTGGTAAC--------GAAGGAGATATTCTCCATAGAAATTAATAAATCAACAATCAGATCTATACACCATTTGTTCAAAAGTTAATATGAAACTGTCTTCTCCTCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308053 109 + 26754465 AATGAT--TATTTTGGTAAC--------GAAGGAGATATTCTCCATAGAAATTAATAAATCAACAATCAGATTTATACACCATTTGTTCAAAAGTTAATATGAAACTGTCTTCTCCTCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4209578 109 - 5137665 AATGAT--TATTTTAGTAAC--------GAAGGAGATATTCTCCATAGAAATTAATAAATCAACAATCAGATTTATACACCATTTGTTCAAAAGTTAATATGAAACTGTCTTCTCCTCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122919485 109 - 135778131 AATGAT--TATTTTAGTAAC--------GAAGGAGATATTCTCCATAGAAATTAATAAATCAACAATCAGATTTATACACCATTTGCTCATAAGTTAATATGAAACTGTCTTCTCCTCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2031275 109 + 2427316 AATGAT--TATTTTAGTAAC--------GAAGGAGATATTCTCCATAGAAATTAATAAATCAACAATCAGATTTATACACCATTTGCTCACAAGTTAATATGAAACTGTCTTCTCCTCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1326851 109 + 1448899 AATGAT--TATTTTAGTAAC--------GAAGGAGATACTCTCCGTAGAAATTAATAAATCAACAATCAGATTTATACACCATTTGCTCATAAGTTAATATGAAACTGTCTTCTCCTCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53034957 107 - 190850796 AATGAA--TATTTTAGTGACT------GGAAAGAGATATTCTCCACAGAAATTAATCAA----CAATCAGATTTATACACCATTCACTCATAAGTTAATATGAACCTGTCTTCTCCCCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195041 108 - 15139346 AATGAA--TATTTTAGTGACT------GGAAAGAGATATTCTCCACAGAAATTAATCAAT---CAATCAGATTTATACACCATTCACTCATAAGTTAATATGAACCTGTCTTCCCTCCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6979497 108 - 7304997 AATGAA--TATTTTAGTGACT------GGAAAGAGATATTCTCCATAGAAATTAATCAAT---CAATCAGATTTATACACCATTCACTCATAAGTTAATATGAACCTGTCTTCTCTCCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9396757 111 - 11631747 aacgaa--tattttagtgact------ggaaagagatattctccatagaaattaatccatcaacaatcagatttataccccattcgctcataagttAATATGAACCTGTCTTCTCCCCT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1795571 111 + 3286835 AATAAA--TATTTTAGTGAAT------GGAAAGAGATATTCCCCATCAAAACTAATAAATTCACAATTGGATTTGTATGTCATTGCCCCGTAAGTTAATATGAACCTGTCGTCTCCTCT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1885726 111 + 4188776 aatgaa--tattttagtgact------ggaaagagatattccctatcgaaactaataaatcaacaattggatttatacatcattccctcataggttaatatgaacctgtcGTCTCCTCT i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76431465 109 + 151834684 AATGAA--TATTTTAGTGACT------GGGAAGAAATGT--CCCATTAAAATTAATAAACCAACAGGCATATTTACCCACCATTCTCTCATAAGTTAATATGAGCCTATCTTATTCGCT i mm10.chr5 C 0 C 0 s canFam3.chr13 48017462 115 + 63241923 AATGAA--TATTTTAGTGACTTAAAAAGGAAAGGGACAGTCCCCATCAAAAGTAATAAATCAACATTCAGA--TATACTCCATTCTCTTGGAAGTTAGCATCAGTCTGTCCTCTCCTCT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4109286 108 - 5279953 AATGATAATATTTTAGTGACT------GGAAAGGGAT-TTCACCATCAAAATTAAT-AATCAGCACTTGAATTTATACATCATTCTCTTCTAAGTT---GTGAGCCTGCCCTCTCATCT i dasNov3.JH568349 M 285 I 3270 e otoGar3.GL873602 8629523 5660 + 8790067 I a score=467286.000000 s hg38.chr4_KI270787v1_alt 80622 36 + 111943 TGTCTCAGGTAGCATCCTGTGAGACACTGACACAGA s panTro5.chr4 119645249 36 - 194502333 TGTCTCAGGTAGCATCCTGTGAGACACTGACACAGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121058684 36 - 195804263 TGTCTCAGGTAGCATCCTGTGAGACACTGACACAGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4489922 36 - 17550833 TGTCTCAGGTAGCATCCTGTGAGACACTGACACAGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360064 36 - 118206036 TGTGTCAGGTAGCATCCTGTGAGACACTGACACAGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111572475 36 - 190429646 TGTCTCAGGAAGCATCCTGTGAGACACTGGCACAGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110741660 36 - 189454096 TGTCTCAGGAAGCATCCTGTGAGACACTGGCACAGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308162 36 + 26754465 TGTCTCAGGAAGCATCCTGTGAGACACTGGCACAGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4209687 36 - 5137665 TGTCTCAGGAAGCATCCTGTGAGACACTGGCACAGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122919594 36 - 135778131 TGTCACAGGAAGCATCCTGTGAGACACTGGCACAGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2031384 36 + 2427316 TGTCTCAGGAAGCATCCTGTGAGACACTGGCACAGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1326960 36 + 1448899 TGTCTCAGGAAGCATCCTGTGAGACACTGGCACAGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035064 36 - 190850796 TGTCTCAGGAGGCTTTCTGTGAGACATTGGCACAGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195149 36 - 15139346 TGTCTCAGGAGGCATTCTGTGAGACACTGGCACAGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6979605 36 - 7304997 TGTCTCAGGAGGCATTCTGTGAGACATTGGTACAGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9396868 36 - 11631747 TGTCTCAGGAGACATTCTGTGAGACATTGGCACAGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1795682 35 + 3286835 TGTCTCAGGAGACATCCT-CAAGGCACCGGCACAGA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1885837 35 + 4188776 TGTGTCAGGATGCACCCC-TGAGGCACTGACACAGA i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76431574 35 + 151834684 T-CCTCAGGGAGTATCCCATGGGGTACCAGCACAGA i mm10.chr5 C 0 C 0 s canFam3.chr13 48017577 24 + 63241923 TGTCTCAGG------------AGGCAATGGCATGGA i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4109394 3270 - 5279953 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=1435503.000000 s hg38.chr4_KI270787v1_alt 80658 101 + 111943 AACTTCCAGAATTGCAAATTTAATATCAGACCCAGATGATGGGAATTCCACCACCCCAT-GAGTCAGCTTGGCTGCCAGTTAGCTAG----CC-CCC-TTAAGTGGCT s panTro5.chr4 119645285 101 - 194502333 AACTTCCAGAATTGCAAATTTAATATCAGAGCCAGATGATGGGAATTCCACCACCCCAT-AAGTCAGCTTGGCTGCCAGTTAGCTAG----CC-CCC-TTAAGTGGCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121058720 101 - 195804263 AACTTCCAGAATTGCAAATTTAATATCAGAGCCAGATGATGGGAATTCCACCACCCCAT-AAGTCAGCTTGGCTGCCAGTTAGCTAG----CC-CCC-TTAAGTGGCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4489958 100 - 17550833 AACTTCCAGAATTGCAAATTTAATATCAGAGCCAGATGAT-GGAATTCCACCACCCCAT-GAGTCAGCTTGGCTGCCAGTTAGCTAG----CC-CCC-TTAAGTGGCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360100 100 - 118206036 AACTTCCAGAATTGCAAATTTAATATCAGACCCAGATGATGGAAATTCCACCACCCCAT-GAGTCAGCTTGGCTGCCAGTTAGCTAG-----C-CCC-TTAAGTGGCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111572511 101 - 190429646 AACTTCCAGAATTGCAAATTTAATATCAGACCCAGGTGATGGGAATTCCACCACCCCAT-GAGTCAGCTTGGCAGCCAGTTAGCTAA----CC-CCC-TTAAGTGGCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110741696 101 - 189454096 AACTTCCAGAATTGCAAATTTAATATCAGACCCAGGTGATGGGAATTCCACCACCCCAT-GAGTCAGCTTGGCAGCCAGTTAGCTAA----CC-CCC-TTAAGTGGCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308198 101 + 26754465 AACTTCCAGAATTGCAAATTTAATATCAGACCCAGGTGATGGGAATTCCACCACCCCAT-GAGTCAGCTTGGCAGCCAGTTAGCTAA----CC-CCC-TTAAGTGGCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4209723 101 - 5137665 AACTTCCAGAATTGCAAATTTAATATCAGACCCAGATGATGGGAATTCCACCACCCCAT-GAGTCAGCTTGGCAGCCAGTTAGCTAA----CC-CCC-TTAAGTGGCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122919630 101 - 135778131 AACTTCCAGAATTGCAAATTTACTATCAGACCCAGATGATGGGAATTCCACCACCCCAT-GAGTCAGCTTGGCAGCCAGTTAGCTAA----CC-CCC-TTAAGTGGCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2031420 101 + 2427316 AACTTCCAGAATTGCAAATTTAATATCAGAGCCAGATGATGGGAATTCCACCACCCCAT-GAGTCAGCTTGGCAGCCAGTTAGCTAA----CC-CCC-TTAAGTGGCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1326996 101 + 1448899 AACTTCCAGAATTGCAAATTTAATATCAGACCCAGATGATGGGAATTCTACCACCCCAT-GAGTCAGCTTGGCAGCCAGTTAGCTAA----CC-CCC-TTAAGTGGCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035100 101 - 190850796 AACTTCCGGGACTGCAAATTTAATATCAGACCCAGATGACGGGAATTCCACCACCCCAT-GAGTCAGCTTGGCAGCCAGTTAGCTAG----TC-CCC-TTAAGTGGCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195185 101 - 15139346 AACTTCCGGAACTGCAAATTTAATACCAGACCCAGATGACGGGAATTCCACCACCCCAT-GAGTCAGCTTGGCAGCCAGTTAGCTAG----TC-CCC-TTAAGTGGCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6979641 101 - 7304997 AACTTCCAGAACTGCAAATTTAATACCAGACCCAGATGACGGGAATTCCACCACCCCAT-GAGTCAGCTTGGCAGCCAGTTAGCGAG----TC-CCC-TTAAGTGGCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9396904 101 - 11631747 AACTTCTGGAACTGCAAATTTAATATCAGACCCAGATGACGGGAATTCCACCACCCCAT-GAGTCAGCTTGGCAGCCAGTTAGCTAG----TC-CCC-TTAAGTGGCT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1795717 100 + 3286835 AACGTCCAGTACTGCAGATCTAAACTCAGACCTGGATGATGGGAATTCCAGCA-CCCGT-TGGTCAGCTTGGCGGCCAGCTGGCTTG----GC-CCT-TTAAGTGGCT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1885872 100 + 4188776 AACTTCCAGAACTGCAGATCTAAAATCGGAGCTGGATGATGGCAATTTCAGCA-CCCGT-GAGTCAGCTTGGCAGCCAGCTGCCTAG----CC-CCC-TTAAGTGGCT i proCoq1.NW_012140747v1 C 0 I 17 s mm10.chr5 76431609 103 + 151834684 AACTTCTGGAACTGCAAATCTAAAATCAGA-CCAGACAATAGGATTTCCACTATCCAGT-GATTCAGCAAGAAAACCAGCTGGCTAAGCCACC-CCC-TTGGGAATC- i mm10.chr5 C 0 C 0 s canFam3.chr13 48017601 103 + 63241923 AAATTCTAGAACTGCAAGTCAACCATCAGACCTGCCCAACAGGAATTTTATCACTTTGTGGGGGCAGCTTGGCAGCCAGTTGGTTAG----CC-CCCTTTAAGTGGAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4112664 89 - 5279953 AATCTCTTGAACTGTGAACCTAAAATCAGCTCCAGGTCATGGAATTTC---------AT-GACTC----TGGCGGCTGGTGGACTAG----TTGTCC-TTCAGCGGGT i dasNov3.JH568349 I 3270 C 0 e otoGar3.GL873602 8629523 5660 + 8790067 I a score=182470.000000 s hg38.chr4_KI270787v1_alt 80759 16 + 111943 CTACCCCTTCATGTTA s panTro5.chr4 119645386 16 - 194502333 CTACCCCTTCATGTTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121058821 16 - 195804263 CTACCCCTTCATGTTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490058 16 - 17550833 CTACCCCTTCATGTTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360200 16 - 118206036 CTACCCCTACATGTTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111572612 16 - 190429646 CTATCCCCTCATGTTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110741797 16 - 189454096 CTATCCCCTCATGTTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308299 16 + 26754465 CTATCCCCTCATGTTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4209824 16 - 5137665 CTATCCCCTCATGTTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122919731 16 - 135778131 CTATCCCCTCATGTTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2031521 16 + 2427316 CTATCCCCTCATGTTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327097 16 + 1448899 CTATCCCCTCATGTTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035201 16 - 190850796 CTACTCACTCATGTTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195286 16 - 15139346 CTAGCCGCTCACGTTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6979742 16 - 7304997 CTAGCCACTCATGTTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397005 16 - 11631747 CTACCTGCTCATGTTA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1795817 16 + 3286835 CTATCGCCTCATGTTA i micMur3.chrUn_NW_017968520v1 C 0 I 411 s mm10.chr5 76431712 15 + 151834684 CTGTCCCTT-GTGTCA i mm10.chr5 C 0 C 0 s canFam3.chr13 48017704 13 + 63241923 ATACCC---CATGTAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4112753 16 - 5279953 CTACCCTCCAGTGTTA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1885972 17 + 4188776 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=573.000000 s hg38.chr4_KI270787v1_alt 80775 14 + 111943 T---T------AAAAAAAAAAGA---------- s panTro5.chr4 119645402 16 - 194502333 T---T----AAAAAAAAAAAAGA---------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121058837 15 - 195804263 T---T-----AAAAAAAAAAAGA---------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490074 17 - 17550833 T---T---AAAAAAAAAAAAAGA---------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360216 20 - 118206036 T---aaaaaaaaaaaaaaaaaga---------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111572628 9 - 190429646 T--------------AAAAATGA---------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110741813 9 - 189454096 T--------------AAAAATGA---------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308315 9 + 26754465 T--------------AAAAATGA---------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4209840 9 - 5137665 T--------------AAAAATGA---------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122919747 10 - 135778131 T---A----------AAAAAAGA---------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2031537 9 + 2427316 T--------------AAAAATGA---------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327113 10 + 1448899 T---A----------AAAAAAGA---------- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035217 11 - 190850796 T--TA----------AAAAAAGA---------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195302 13 - 15139346 TAAAA----------AAAAAAGA---------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6979758 10 - 7304997 T---A----------AAAAAAGA---------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397021 10 - 11631747 T---A----------AAAAAAGA---------- i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76431727 8 + 151834684 ---------------AAAAAAAA---------- i mm10.chr5 C 0 I 18 s canFam3.chr13 48017717 12 + 63241923 ----------AAAAAAAAAAAG----------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4112769 21 - 5279953 ------------CCAAAAAAAGAAACGTATAAG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1885972 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1795833 411 + 3286835 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=87338.000000 s hg38.chr4_KI270787v1_alt 80789 10 + 111943 AACATATGGT s panTro5.chr4 119645418 10 - 194502333 AACATATggt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121058852 10 - 195804263 AACATATGGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490091 10 - 17550833 AACATATGGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360236 10 - 118206036 aaCGTGTGGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111572637 10 - 190429646 AACATGTGGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110741822 10 - 189454096 AACATGTGGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308324 10 + 26754465 AACATGTGGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4209849 10 - 5137665 AACATGTAGT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122919757 10 - 135778131 AACATGTGGT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2031546 10 + 2427316 AACATGTGGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327123 10 + 1448899 AACATGTAGT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035228 10 - 190850796 AACATGTggc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195315 10 - 15139346 AACATGTggc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6979768 8 - 7304997 AACA--Cggc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397031 8 - 11631747 AACG--Tggc i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48017729 10 + 63241923 AATATCTGAT i canFam3.chr13 C 0 I 81 s dasNov3.JH568349 4112790 10 - 5279953 AATATATGgg i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1885972 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1795833 411 + 3286835 I e mm10.chr5 76431735 18 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=53044.000000 s hg38.chr4_KI270787v1_alt 80799 5 + 111943 Ggagc s panTro5.chr4 119645428 5 - 194502333 ggagc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121058862 5 - 195804263 Ggagc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490101 5 - 17550833 Ggagc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360246 5 - 118206036 Ggggc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111572647 5 - 190429646 Agagc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110741832 5 - 189454096 Agagc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308334 5 + 26754465 Agagc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4209859 5 - 5137665 Agagc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122919767 5 - 135778131 Agagc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2031556 5 + 2427316 Agagc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327133 5 + 1448899 Agagc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035238 5 - 190850796 agagc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195325 5 - 15139346 ggagc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6979776 5 - 7304997 ggagc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397039 5 - 11631747 ggagc i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4112800 5 - 5279953 gaagc i dasNov3.JH568349 C 0 I 340 e proCoq1.NW_012140747v1 1885972 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1795833 411 + 3286835 I e mm10.chr5 76431735 18 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48017739 81 + 63241923 I a score=2663342.000000 s hg38.chr4_KI270787v1_alt 80804 282 + 111943 acagtggctcacatctgtaatcccagcactttgggaggtggaggcgggcagatcactagaggtcaggagtttgagaccagcctggccaacatggtgatactctgtctctactaaaaatac-aaaaaa-ttaagtgggtgtggtggcgcttacctgcagtcatagccactccgggggctgaggtataagaattgcttggacctgggaggcagaggttgcagtgagctgagatttcgccattgtactccaacctgggtgacagagcaatactctgcctcaaaaaaa s panTro5.chr4 119645433 282 - 194502333 acagtggctcacatctgtaatcccagcactttgggaggtggaggtgggcagaccgctagaggtcaggagtttgagaccagtctggccaacatggtgatactctgtctctactaaaaatac-aaaaaa-ttaagtgggtgtggtggcgcttacctgcagtcatagccactctgggggctgaggtataagaattgcttgaacctgggaggcagaggttgcagtgagctgagatttcgccattgtactccaacctggatgacagagcaatactctgcctcaaaaaaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121058867 282 - 195804263 acagtggctcacatctgtaatcccagcactttgggaggtggaggcgggcagaccgctagaggtcaggagtttgagaccagtctggccaacatggtgatactctgtctctactaaaaatac-aaaaaa-ttaagtgggtgtggtggcgcttacctgcagtcatagccactctgggggctgaggtataagaattgcttgaacctgggaggcagaggttgcagtgagctgagatttcgccattgtactccaacctggatgacagagcaatactctgcctcagaaaaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490106 272 - 17550833 acagtggctcacatctgtaatcccagcactttgggaggtggaggcaggcagatcgctagaggtc-----------accagcctggccaacatggtgatactctgtctttactaaaaatacaaaaaaa-ttaagtgggtgtggtggcgcttacctgcagtcatagccactctgggggctgaggtataagaattgcttgaacctgggaggcagaggttgcagtgagctgagatttcgccattgtactccaacctgggtgacagagcaatactctgcctcaaaaaaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360251 282 - 118206036 accgtggctcacatctgtaatctcagcactttgggcggtggaggcgggcagatcgctagaggtcaggagattgagaccagcctggccaacatggtgatactctgtctctactaaaaatac-aaaaaa-ttaagtgggtgtggtggcgcttacctgcagttataaccactttgggggctgaggtataagaattgcttgaacctgggaggcagaggttgcagtgagctgagatttcgccattgtactccaacctgggtgacagagcaatactctgcctcaaaaaaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111572652 283 - 190429646 acagtggctcacatctgtcatcccagcactttgggaggtggaggtgggcagatcgcttgaggtcaggagttcaagaccagcctggccaacatggtgataccctgtctgtactaaaaatac-aaaaaatttaggtgggcatggtggtgctcacctgcagtcatagctactccgggagctgaggtataagaattgcttgaacctgggaggcagaggttgcagtgagctgaaattgcgccattgcactccagcctgagtgacagagcaatactctgcctcagggaaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110741837 283 - 189454096 acagtggctcacatctgtcatcccagcactttgggaggtggaggtgggcagatcgcttgaggtcaggagttcaagaccagcctggccaacatggtgataccctgtctgtactaaaaatac-aaaaaatttaggtgggcatggtggtgctcacctgcagtcatagctactccgggagctgaggtataagaattgcttgaacctgggaggcagaggttgcagtgagctgaaattgcgccattgcactccagcctgagtgacagagcaatactctgcctcagggaaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308339 283 + 26754465 acagtggctcacatctgtcatcccagcactttgggaggtggaggtgggcagatcgcttgaggtcaggagttcaagaccagcctggccaacatggtgataccctgtctgtactaaaaatac-aaaaaatttaggtgggcatggtggtgctcacctgcagtcatagctactccgggagctgaggtataagaattgcttgaacctgggaggcggaggttgcagtgagctgaaattgcgccattgcactccagcctgagtgacagagcaatactctgcctcagggaaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4209864 283 - 5137665 acagtggctcatatctgtcatcccagcactttgggaggtggaggtgggcagatcgcttgaggtcaggagttcaagaccagcctggccaacatggtgatacccagcctgtactaaaaatac-aaaaaatttaggtgggcatggtggtgctcacctgcagtcatagctactccgggagctgaggtataagaattgcttgaacctgggaggcagaggttgcagtgagctgagattgcgccattgcactccagcctgggtgacagagcaatactctgcctcagaaaaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122919772 283 - 135778131 acagtggctcacatctgtcaccccagcactttgggaggtggaggtgggcagatcgcttgaggtcaggagttcaagaccagcctggccaacatggtgataccctgtctatactaaaaacac-aaaaaatttaggtgggcatggtggtgctcacctgcagtcatagctactccgggagctgaggtataagaattgcttgaacctgggaggcagaggttgcagtgagctgaaattgcgccattgcacgccagcctgggtgacagagcaatactctgcctcaggaaaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2031561 283 + 2427316 acagtggctcatatctgtcatcccagcactttgggaggtggaggtgggtagatcgcttgaggtcaggagttcaagaccagcctggccaacatggtgataccctgtctgtactaaaaatac-aaaaaatttaggtgggcatggtggtgctcacctgcagtcatagctactccgggagctgaggtataagaattgcttgaacctgggaggcagaggttgcagtgagctgagattgcgccattgcactccagcctgggtgacagagcaatactctgcctcagaaaaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327138 278 + 1448899 acagtggctcacatctgtcatcccagcactttgggaggtggaggtgggaagatcgcttgaggccaggagttcaagaccagcctggccaacatggtgataccctgtctgtactaaaaacac-aaaaaatttaggtgggcgtggtggtgctcacctgcagtcatagctactccaggagctgaggtataagaattgcttgaacctgggaggcagaggttgcagtgagctgagatttcgccattgcactccagcctgggtgacagagcaatactctgcctcag----- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035243 280 - 190850796 acagtggctcacacctgtaatcccagcactttgggaggcggaggcaggcagattgcttgagttcaagggttcgagaccagcctggccaacatcgtgataccttgtctctactaaaaatac-agaaaa-ttagctggacagggcggtgtccacctgcagttgcagctactcaggggactgaggcccaagaattgcttgaacctgggtgacagacgttgcagtgatctgagattttgccattgcactccagcctgggtgacagaataatactctgcctcaaaaa-- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195330 279 - 15139346 acagtgggtcacacctgtaatcccagcactttgggaggcagaggcaggcagatcgcttgagttcaggagttcaagaccagcctggccaacatcgtgataccctgtgtctactaaaaatat-agaaaa-ttagctggacag---ggtgtccacctgcagttgcagctgctctgggggctgaggcacaagaattgcttgaacctgggcgacagaggttgcagtgatctgagattttgccattgcactccagcctgggtgacagaataatactctgcctcaaaaaag i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6979781 281 - 7304997 gcagtggctcacacctgtaatcccagcactttgggaggcagagggaggcagatcgcttgagttcaggagttcgagaccagcctggccaatatcgtgataccctgtctctgctaaaaatat-agaaaa-ttagctggacgaggtggtgtccacctgcagttgcagctactctgggggctgaggcacaagaattgcttgaacctgggcgacagaggttgcagtgatctgagattttgccattgcaccccagcctgggtgacagaataatactctgcctcaaaaaa- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397044 279 - 11631747 acagtggctcacacctgtaatcccagcactttgggaggcggaggcaggctgatcgcttgagttcaagggtttgagaccagcctggccaacatcgtgataccctgtctctactaaaaatat-agaaaa-ttagctggacggggtggtgtccacctgcagttgcagctactctgggggctgaggcacaagaattgcttgaacctgggcgacagaggttgcagtgatccgagatttcaccattgcactccagtctgggtgacagaataatactctgcctcagaa--- i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1885972 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1795833 411 + 3286835 I e mm10.chr5 76431735 18 + 151834684 I e dasNov3.JH568349 4112805 340 - 5279953 I e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48017739 81 + 63241923 I a score=53611.000000 s hg38.chr4_KI270787v1_alt 81086 6 + 111943 aaaaaa s panTro5.chr4 119645715 6 - 194502333 aaaaaa i panTro5.chr4 C 0 I 3 s panPan2.chr4 121059149 6 - 195804263 aaaaaa i panPan2.chr4 C 0 I 1 s gorGor5.CYUI01014963v1 4490378 6 - 17550833 aaaaaa i gorGor5.CYUI01014963v1 C 0 I 3 s nomLeu3.chr9 69360533 6 - 118206036 aaaaaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111572935 6 - 190429646 aaaaga i rheMac8.chr5 C 0 I 5 s macFas5.chr5 110742120 6 - 189454096 aaaaga i macFas5.chr5 C 0 I 5 s macNem1.NW_012012466v1 13308622 6 + 26754465 aaaaga i macNem1.NW_012012466v1 C 0 I 5 s cerAty1.NW_012001307v1 4210147 6 - 5137665 aaagaa i cerAty1.NW_012001307v1 C 0 I 5 s chlSab2.chr7 122920055 6 - 135778131 aaaaga i chlSab2.chr7 C 0 I 5 s manLeu1.NW_012104388v1 2031844 6 + 2427316 aaagaa i manLeu1.NW_012104388v1 C 0 I 5 s colAng1.NW_012119221v1 1327416 6 + 1448899 aaaaaa i colAng1.NW_012119221v1 C 0 I 5 s calJac3.chr3 53035523 6 - 190850796 aaaaga i calJac3.chr3 C 0 I 1 s saiBol1.JH378162 8195609 6 - 15139346 aaaaga i saiBol1.JH378162 C 0 I 1 s cebCap1.NW_016107439v1 6980062 6 - 7304997 aataaa i cebCap1.NW_016107439v1 C 0 I 1 s aotNan1.NW_018493494v1 9397323 6 - 11631747 aaaaaa i aotNan1.NW_018493494v1 C 0 I 1 s dasNov3.JH568349 4113145 6 - 5279953 aagggg i dasNov3.JH568349 I 340 C 0 e proCoq1.NW_012140747v1 1885972 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1795833 411 + 3286835 I e mm10.chr5 76431735 18 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48017739 81 + 63241923 I a score=111566.000000 s hg38.chr4_KI270787v1_alt 81092 12 + 111943 aaagaaagaaaC s panTro5.chr4 119645724 12 - 194502333 aaagaaagaaaC i panTro5.chr4 I 3 C 0 s panPan2.chr4 121059156 12 - 195804263 aaagaaagaaaC i panPan2.chr4 I 1 C 0 s gorGor5.CYUI01014963v1 4490387 12 - 17550833 aaagaaggaaaC i gorGor5.CYUI01014963v1 I 3 C 0 s nomLeu3.chr9 69360539 6 - 118206036 ------aaaaaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111572946 12 - 190429646 aaggaaagaaaG i rheMac8.chr5 I 5 C 0 s macFas5.chr5 110742131 12 - 189454096 aaggaaagaaaG i macFas5.chr5 I 5 C 0 s macNem1.NW_012012466v1 13308633 12 + 26754465 aaggaaagaaaG i macNem1.NW_012012466v1 I 5 C 0 s cerAty1.NW_012001307v1 4210158 12 - 5137665 aaggaaagaaaG i cerAty1.NW_012001307v1 I 5 C 0 s chlSab2.chr7 122920066 12 - 135778131 aaggaaagaaaG i chlSab2.chr7 I 5 C 0 s manLeu1.NW_012104388v1 2031855 12 + 2427316 aaggaaagaaaG i manLeu1.NW_012104388v1 I 5 C 0 s colAng1.NW_012119221v1 1327427 12 + 1448899 aaggaaagaaaG i colAng1.NW_012119221v1 I 5 C 0 s calJac3.chr3 53035530 12 - 190850796 aagaagagaaaC i calJac3.chr3 I 1 C 0 s saiBol1.JH378162 8195616 12 - 15139346 aagaaaagaaaC i saiBol1.JH378162 I 1 C 0 s cebCap1.NW_016107439v1 6980069 12 - 7304997 aagaaaagaaaC i cebCap1.NW_016107439v1 I 1 I 770 s aotNan1.NW_018493494v1 9397330 12 - 11631747 aagaaaagaaaC i aotNan1.NW_018493494v1 I 1 C 0 s proCoq1.NW_012140747v1 1885989 12 + 4188776 AAAAAAAGAAAC i proCoq1.NW_012140747v1 I 17 C 0 s dasNov3.JH568349 4113151 12 - 5279953 agagaaataaat i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1795833 411 + 3286835 I e mm10.chr5 76431735 18 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48017739 81 + 63241923 I a score=27942.000000 s hg38.chr4_KI270787v1_alt 81104 4 + 111943 GTGT- s panTro5.chr4 119645736 4 - 194502333 GTGT- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059168 4 - 195804263 GTGT- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490399 4 - 17550833 GTGT- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360545 4 - 118206036 GTGT- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111572958 4 - 190429646 ATGT- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742143 4 - 189454096 ATGT- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308645 4 + 26754465 ATGT- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210170 4 - 5137665 ATGT- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920078 4 - 135778131 ATGT- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2031867 4 + 2427316 ATGT- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327439 4 + 1448899 ATGT- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035542 4 - 190850796 ACAT- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195628 4 - 15139346 ATGT- i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9397342 4 - 11631747 ATGT- i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1886001 4 + 4188776 ATGT- i proCoq1.NW_012140747v1 C 0 C 0 s dasNov3.JH568349 4113163 4 - 5279953 -TTTT i dasNov3.JH568349 C 0 I 5 e micMur3.chrUn_NW_017968520v1 1795833 411 + 3286835 I e mm10.chr5 76431735 18 + 151834684 I e cebCap1.NW_016107439v1 6980081 770 - 7304997 I e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48017739 81 + 63241923 I a score=43146.000000 s hg38.chr4_KI270787v1_alt 81108 3 + 111943 AAG s panTro5.chr4 119645740 3 - 194502333 AAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059172 3 - 195804263 AAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490403 3 - 17550833 AAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360549 3 - 118206036 AAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111572962 3 - 190429646 AAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742147 3 - 189454096 AAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308649 3 + 26754465 AAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210174 3 - 5137665 AAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920082 3 - 135778131 AAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2031871 3 + 2427316 AAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327443 3 + 1448899 AAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035546 3 - 190850796 AAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195632 3 - 15139346 AAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6980851 3 - 7304997 AAG i cebCap1.NW_016107439v1 I 770 C 0 s aotNan1.NW_018493494v1 9397346 3 - 11631747 AAG i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1886005 3 + 4188776 AAG i proCoq1.NW_012140747v1 C 0 C 0 s dasNov3.JH568349 4113172 3 - 5279953 AAG i dasNov3.JH568349 I 5 C 0 e micMur3.chrUn_NW_017968520v1 1795833 411 + 3286835 I e mm10.chr5 76431735 18 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48017739 81 + 63241923 I a score=644342.000000 s hg38.chr4_KI270787v1_alt 81111 55 + 111943 AATACATGA-------TTCACTTCATATCCTGTGAATTTAGTACTAGATGATTACATGAGTC s panTro5.chr4 119645743 62 - 194502333 AATACATGATTCACTTTTCACTTCATATCCTGTGAATTTAGTACTAGATGATTACATGAGAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059175 62 - 195804263 AATACATGATTCACTTTTCACTTCATATCCTGTGAATTTAGTACTAGATGATTACATGAGAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490406 62 - 17550833 AATACGTGATTCACTTTTCACTTCATATCCTGTGAATTTAGTACTAGATGATTACATGACAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360552 55 - 118206036 AATACATGG-------TTCACTTCATATCCTGTGAATTTAATACTAGATGATTACATGAGGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111572965 55 - 190429646 AATACATGA-------TTCATTTCATATCCTGTGAATTTTGTACTAGATGATTACATGAGTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742150 55 - 189454096 AATACATGA-------TTCATTTCATATCCTGTGAATTTTGTACTAGATGATTACATGAGTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308652 55 + 26754465 AATACAGGA-------TTCATTTCATATCCTGTGAATTTTGTACTAGATGATTACATGAGTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210177 55 - 5137665 AATACATGA-------TTCATTTCATATCCTGTGAATTTAGTACTAGATGATTACATGAGTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920085 55 - 135778131 AATACATGA-------TTCATTTCATATCCTGAGAATTTAGTACTAGATGATTACATGAGTC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2031874 55 + 2427316 AATACATGA-------TTCATTTCATATCCTGTGAATTTAGTACTAGATGATTACATGAGTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327446 55 + 1448899 AATACATGA-------TTCATTTCATATCCTGCGAATTTAGTACTAGATGATTACGTGAGTC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035549 55 - 190850796 GATACATGA-------TTCACTTTGTATCCTGTGAATTTAGTACGAAATGATTACATGAGTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195635 55 - 15139346 AATACATGA-------TTCATTTCGTATCCTGTGAATTTAGTACTAAATGATTACATGAGTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6980854 55 - 7304997 AATGCATGA-------TTCACTTCGTATCCTGTGAATTTAGTACTAAATGATTACATGAGTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397349 55 - 11631747 AATACATGA-------TTCACTTTGTATCCTGTGAATCTAGAACTAAATGATTACATCAGTC i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1886008 51 + 4188776 AATATATGA-------TCCATTTAATATCCTGTGAATTTAGCAC----TGATGATGTGAATC i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76431753 55 + 151834684 AATACATAA-------TTGTCTTATTATTCTATGAATTTAACACTAGATGATTATTTGAACC i mm10.chr5 I 18 C 0 s dasNov3.JH568349 4113175 55 - 5279953 AATATATGA-------CCCAGTCAGTTTGCTCTGAATTTAGCAGTGGGTGATTATGTGAATC i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1795833 411 + 3286835 I e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48017739 81 + 63241923 I a score=330126.000000 s hg38.chr4_KI270787v1_alt 81166 29 + 111943 AGAACTCAACTATGTACATCAATAACTAG s panTro5.chr4 119645805 29 - 194502333 AGAAATCAACTATGTACATCAATAACTAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059237 29 - 195804263 AGAAATCAACTATGTACATCAATAACTAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490468 29 - 17550833 AGAAATCAACTATGTACATCAATAACTAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360607 29 - 118206036 AGAAATCAACTATGTACATCAGTAACTAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111573020 29 - 190429646 AAGTGTCAACTATGTACATCAATAACTAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742205 29 - 189454096 AAGTGTCAACTATGTACATCAATAACTAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308707 29 + 26754465 AAGTGTCAACTATGTACATCAATAACTAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210232 29 - 5137665 AAAAGTCAACTATATACATCAATAACTAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920140 29 - 135778131 AAAAGTCAACTATATACATCAATAACTAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2031929 29 + 2427316 AAAAGTCAACTATATACATCAATAACTAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327501 29 + 1448899 AAAAATCAACTATATACATCAATAACTAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035604 28 - 190850796 AGAAATCAACTATATA-ATTGATAACTAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195690 28 - 15139346 AGAAATCAACTATATA-ATTGATAACTAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6980909 28 - 7304997 AGAAATCAACTATATA-ATTGATAACTAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397404 28 - 11631747 AGAAATCAACTGTATA-ACTGATAACTAG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1796244 29 + 3286835 agaaaTCAACTATATAAATCAATAACTAA i micMur3.chrUn_NW_017968520v1 I 411 C 0 s proCoq1.NW_012140747v1 1886059 29 + 4188776 AGAAATCAACTATATAAATCAATAACTAA i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76431808 29 + 151834684 TGAAAGGAGCCCTGCAAATCAAAATCCAA i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4113230 29 - 5279953 GGAAATTAACTACATAAGCCAACACCCAA i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48017739 81 + 63241923 I a score=563842.000000 s hg38.chr4_KI270787v1_alt 81195 45 + 111943 TATTAAGTTCGTTAGATTGTGCA-----AGGAGAGATACTATATC-----TTTTT-- s panTro5.chr4 119645834 45 - 194502333 TATTAAATTCATTAGATTGTGCA-----AGGAGAGATACTATATC-----TTTTT-- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059266 45 - 195804263 TATTAAATTCATTAGATTGTGCA-----AGGAGAGATACTATATC-----TTTTT-- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490497 45 - 17550833 TATTAAATTCATTAGATTGTGCA-----AGGAGAGATACTATATC-----TTTTT-- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360636 45 - 118206036 TATTAAATTCATTAGATTGTGCA-----AGGAGAGATACTATATC-----TTTTT-- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111573049 45 - 190429646 TATTAAGTTCATTCGGTTGTGCA-----AGGAGAGATACTGTATC-----TTTTT-- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742234 45 - 189454096 TATTAAGTTCATTCGGTTGTGCG-----AGGAGAGATACTGTATC-----TTTTT-- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308736 45 + 26754465 TATTAAGTTCATTCGGTTGTGCA-----AGGAGAGATACTGTATC-----TTTTT-- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210261 45 - 5137665 TATTAAATTCATTAGGTTGTGCA-----AGGAGAGATACTGTATC-----TTTTT-- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920169 44 - 135778131 TATTAAATTCATTAGGTTGTGCA-----AGGAGAGATACTATATC------TTTT-- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2031958 45 + 2427316 TATTAAATTCATTAGGTTGTGCA-----AGGAGAGATACTGTATC-----TTTTT-- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327530 45 + 1448899 TATTAAATTCATTAGATTGTGCA-----AGGAGAGATACTATATC-----TTTTT-- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035632 48 - 190850796 TATTAAATTCATTAGACTGTGCA-----AGG-GAGATACTATATCTCTC-TTTTT-- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195718 49 - 15139346 TATTAAATTCATTAGACTGTGCA-----AGGAGAGATACTATATCTCTC-TCTTT-- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6980937 49 - 7304997 TATTAAATTcattagactgtgca-----aggagagatactatatctctc-ttttt-- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397432 49 - 11631747 TATTAAATTCATTAGACTGTGCA-----AGGGGAGATACTATCTCTCTC-TTTTT-- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1796273 50 + 3286835 TATTAAATTCATTAGATTGTGCA-----AGGATAGACACCTTATCTATCTTTTTT-- i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1886088 49 + 4188776 TATTAAATTcattagattgtgca-----agggtagacaccttatctatc-tttgt-- i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76431837 45 + 151834684 CACTAAACACATTAGACATTACA-----AAAACAGGCCCTATATC-----TATCT-- i mm10.chr5 C 0 I 284 s canFam3.chr13 48017820 36 + 63241923 ---------CATtaggttgtata-----agagtagataccacacc-----tattt-- i canFam3.chr13 I 81 I 3 s dasNov3.JH568349 4113259 55 - 5279953 -GAATAATccattctactgtacactaccgggacagatgctatatctaac-ttgtttg i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8629523 5660 + 8790067 I a score=553092.000000 s hg38.chr4_KI270787v1_alt 81240 44 + 111943 CTATTGTG------GGCCATCACGCAGTGTCTGAC--ATT---TTAGGAACACAT s panTro5.chr4 119645879 44 - 194502333 TTATTGTG------GGCCATCACGCAGTGTCTGAT--ATT---TTAGGAACACAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059311 44 - 195804263 TTATTGTG------GGCCATCACGCAGTGTCTGAT--ATT---TTAGGAACACAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490542 44 - 17550833 TTATTGTG------GGCCATCACACAGTGTCTGAT--ATT---TTAGGAACACAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360681 44 - 118206036 TTGTTGTG------GGCCATCACACAGTGCCTGAC--ATT---TTAGGAACACAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111573094 44 - 190429646 TTGTTGTG------GGCCATCACACAGTGTCTGAC--ATT---TTAGGAATGCAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742279 44 - 189454096 TTGTTGTG------GGCCATCACACAGTGTCTGAC--ATT---TTAGGAATGCAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308781 44 + 26754465 TTGTTGTG------GGCCATCACACAGTGTCTGAC--ATT---TTAGGAATGCAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210306 44 - 5137665 TTGTTGTG------GGCCATCACACAGTGTCTGAC--ATT---TTAGGAATGCAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920213 44 - 135778131 TTGTTGTG------GGCCATCATACAGTGTCCGAC--ATT---TTAGGAATGCAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2032003 44 + 2427316 TTGTTGTG------GGCCATCACACAGTGTCTGAC--ATT---TTAGGAATGCAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327575 44 + 1448899 TTGTTGTG------GGCCATCACACAGTGTCTGAC--ATT---TTAGGAACGCAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035680 44 - 190850796 TTCTTGTG------GCCTGTCATATAGTGTCTGAC--ATT---TTAGGAACTCAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195767 44 - 15139346 TTCTTGCG------GCCTGTCACACAGTGTCTGAC--ATT---TCAGGAACTCAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6980986 44 - 7304997 ttcctgtg------gcctgtcacacagtgtctgac--att---ttaggaactcat i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397481 44 - 11631747 TTCTTGTG------GCCTGTCATACAGTGTCTGAT--ATT---TTAGGAACTCAT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1796323 44 + 3286835 TTGTTGTG------GACCCTAACATAGTGTCTAAC--ATT---TTAGGAACTCAT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1886137 44 + 4188776 ttgttgtt------gaccctaacatagcgtctaac--att---ttaggaactcat i proCoq1.NW_012140747v1 C 0 C 0 s canFam3.chr13 48017859 47 + 63241923 ttgttgtg------ggccctaatgcattgcctgac--atgtaattaggaactcaa i canFam3.chr13 I 3 C 0 s dasNov3.JH568349 4113314 52 - 5279953 acactgtgtgcctagaccttaatgccatgcctgacatatt---ttaggaactcaa i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76431882 284 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=1430882.000000 s hg38.chr4_KI270787v1_alt 81284 107 + 111943 GAAGTATTTTTCAAAT-AAAAAAAAT-TTTAAGAAA---GGAAAGGAGATGAAG----CAA--AAATAATCCAGTTTCTTTCCAGAAGATTAAGCTACTGA-TGAGACATGATGAC-TTT s panTro5.chr4 119645923 108 - 194502333 GAAGTATTTTTGAAAT-AAAAAAAAT-TTTAAGAAA---GGAAAGGAGATGAAG----CAA--AAATAATCCAGTTTCTTTCCAGAAGATTAAGCTACTGA-TGAGACATGATGACTTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059355 108 - 195804263 GAAGTATTTTTGAAAT-AAAAAAAAT-TTTAAGAAA---GGAAAGGAGATGAAG----CAA--AAATAATCCAGTTTCTTTCCAGAAGATTAAGCTACTGA-TGAGACATGATGACTTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490586 109 - 17550833 GAAGTATTTTTGAAATAAAAAAAAAT-TTTAAGAAA---GGAAAGGAGATGAAG----CAA--AAATAATCCAGTTTCTTTCCAGAAGATTAAGCTACTGA-TGAGACATGATGACTTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360725 108 - 118206036 GAAGTGTTTTTCAAAT-AAAAAAAAA-TTTAAGAAA---GGAAAGGAGATGAAA----CAA--AAATAATCCAGGTTCTTTCCAGAAGATTAAGCTACTGA-TGAGACATGATGACTTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111573138 107 - 190429646 GAAGTATTTTTCTAAT--AAAAATAT-TTTAAGAAA---GGAAAGGAGATGAAG----AAG--AAATAATCCAGTTTCTTTCCAGAATATCAAACTACTGA-TGAGACATGATGACTTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742323 107 - 189454096 GAAGTATTTTTCTAAT--AAAAATAT-TTTAAGAAA---GGAAAGGAGATGAAG----AAG--AAATAATCCAGTTTCTTTCCAGAATATCAAACTACTGA-TGAGACATGATGACTTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308825 107 + 26754465 GAAGTATTTTTCTAAT--AAAAATAT-TTTAAGAAA---GGAAAGGAGATGAAG----AAG--AAATAATCCAGTTTCTTTCCAGAATATCAAACTACTGA-TGAGACATGAGGACTTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210350 107 - 5137665 GAAGTATTTTTCTAAT--AAAAATAT-TTTAAGAAA---GGAAAGGAGATGAAG----AAG--AAATAATCCAGTTTCTTTCCAGAAGATTAAACTACTGA-TGAGACACGATGACTTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920257 107 - 135778131 GAAGTATTTTTCTAAT--AAAAATAT-TTTAAGAAA---GGAAAGGATATGAAG----AAG--AAATAATCCAGTTTCTTTCCAGAAGATTAAACTACTGA-TGAGACATGATGACTTTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2032047 107 + 2427316 GAAGTATTTTTCTAAT--AAAAATAT-TTTAAGAAA---GGAAAGGAGATGAAG----AAG--AAATAATCCAGTTTCTTTCCAGAAGATTAAACTACTGA-TGAGACATGATGACTTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327619 107 + 1448899 GAAGTATTTTTCGAAT--AAAAAAAT-TTTAAGAAA---GGGAAGGAGATGAAG----AAG--AAATAATCCAGTTTCTTTCCAGAAGATTAAACTACTGA-TGAGACATGATGACTTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035724 108 - 190850796 GAAGTATTTTTCAAAT-AAACAAAAT-TCTAAGAAA---GGAAAGGAGATGAAG----AAG--AAATAATCCAGTTTCTTTCCAGAAGATTAAACTACTGA-TGAGACATGATGACCTTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195811 108 - 15139346 GAAGTATTTTTCAAAT-AAACAAAAT-TTTAAGAAA---GGAAAGGAGATGAAG----AAA--AAATAATCCAGTTTCTTTCCAGAAGATTAAACTACTGA-TGAGACACGATGACCTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6981030 108 - 7304997 gaagtatttttcaaat-aaacaaaAT-TTTAAGAAA---GGAAAGGAGATGAAG----AAA--AGATAATCCAGTTTCTTTCCAGAAGATTAAACTACTGA-TGAGACATGATGACCTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397525 108 - 11631747 GAAGTATTTTTCAAAT-AAACAAAAT-TTTAAGAAA---GGAAAGGAGATGAAG----AAG--AAATAATCCAGTTTCTTTCCAGAAGATTAAACCACTGA-TGAGACATGATGACCTTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1796367 112 + 3286835 GAACTATATTTTGAAT-AAACAAAATGTTaaagaaa---agaaaggaaataaagaagaaag--aaagaaTTCAGTTTCTTCCCAGAAGATTAAGCTGCTGA-TGAGATGTGATGACTTT- i micMur3.chrUn_NW_017968520v1 C 0 I 100 s proCoq1.NW_012140747v1 1886181 112 + 4188776 gaagtatgttttgaat-aaataaaATGTTTaagaaa---agaaaggaaataaagaagaaag--aaagaaTTCAGTTTCTTCCCAGAAGATTAAGCTACTGA-TGAGATGCGATGACTTT- i proCoq1.NW_012140747v1 C 0 I 1 s mm10.chr5 76432166 99 + 151834684 GAAGTAT-TTTCAAAT-GAATTAAAT-TTTAAGAAAGGGGGGAAAGATTTAAAG----------------CCAATGTCTCTCCAGGAAATTAAACTACTGA-TGAGAAGTGACGTTTTT- i mm10.chr5 I 284 C 0 s canFam3.chr13 48017906 107 + 63241923 gaaatattttttgaac-aaataagtA-TTTAAGAAA---GG-AAGATAATAGAG----TGGGTGGGAAATTCAGGTTCTTTCCAG---ATGAAGCTGCTGAGTGAGATGTGATGACTTTT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4113366 105 - 5279953 gaaatatttgttggat-aaataaaAAATAAAAGAAA---GGAAGGGA----AAA----AAG--AAAGATTTCAGCCTGTTTCGAGACGATTAAGCTGCTGG-TAAGATGTGATGTCATTT i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8629523 5660 + 8790067 I a score=1346084.000000 s hg38.chr4_KI270787v1_alt 81391 101 + 111943 CATATGAT--TTACATCAAGTGGTTTCCTTCCTTT-TGAGGAGCTATTCAA-AAA-ACTTTTGGAGGATAGAGAGAACTATGAAAATAAGTCAATCATATAATTGG s panTro5.chr4 119646031 101 - 194502333 CATATGAC--TTACATCAAGTGGTTTCCTTCCTTT-TGAGGAGCTATTCAT-GAC-ACTTTTGGAGGATAGAGAGAACTATGAAAATAAATCAATCACATAATTGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059463 101 - 195804263 CATATGAC--TTACATCAAGTGGTTTCCTTCCTTT-TGAGGAGCTATTCAT-GAC-ACTTTTGGAGGATAGAGAGAACTATGAAAATAAATCAATCATATAATTGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490695 101 - 17550833 CATATGAC--TTACATCAAGTGGTTTCCTTCCTTT-TGAGGAGCTATTCAT-GAA-ACTTTTGGAGGATAGAGAGAACTATGAAAATAAATCAATCATATAATTGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360833 101 - 118206036 CATATGAC--TTACATCAAGTGGTTTCCTTCCTTT-TGAGGAGCTATTCAT-GAA-ACTTTTGGAGGATAGCGAGAACTACGAAAATAAGTCAATCATATAATTGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111573245 101 - 190429646 CATATGAC--TTACATCAAGTGGTTTCCTTCCTCT-TGAGGAGCTATTCAT-AAC-ACTTTTGGAGGATAGAGAGAACTATGAAAATAAATCAATCATGTAATTGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742430 101 - 189454096 CATATGAC--TTACATCAAGTGGTTTCCTTCCTCT-TGAGGAGCTATTCAT-AAC-ACTTTTGGAGGATAGAGAGAACTATGAAAATAAATCAATCATGTAATTGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13308932 101 + 26754465 CATATGAC--TTACATCAAGTGGTTTCCTTCCTCT-TGAGGAGCTATTCAT-AAC-ACTTTTGGAGGATAGAGAGAACTATGAAAATAAATCAATCATGTAATTGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210457 101 - 5137665 CATATGAC--TTACATCAAGTGGTTTCCTTCCTCT-TGAGGAGCTATTCAT-AAA-ACTTTTGGAGGATAGAGAGAACTATGAAAATAAATCAATCATGTAATTGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920364 101 - 135778131 CATATGAC--TTACATCAAGTGGTTTCCTTCCTCT-TGAGGAGCTATTCAT-AAA-ACTTTTGGAGGACAGAGAGAACTATGAAAATAAATCAATCATGTAATTGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2032154 101 + 2427316 CATATGAC--TTACATCAAGTGGTTTCCTTCCTCT-TGAGGAGCTATTCAT-AAA-ACTTTTGGAGGATAGAGAGAACTATGAAAATAAATCAATCATGTAATTGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327726 101 + 1448899 CATATGAC--TTACATCAAGTGGTTTCTTTCCTCT-TGAGGAGCTATTCAT-AAA-ACTTTTGGAGGACAGAGAGAACTATGAAAATAAACCAATCATGTAATTGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035832 103 - 190850796 CACATGACTATTACATCAAGCGGTTTCCTTGCTTT-TGAGGAGCTATTCGT-AAA-ACTTTTGGAGGATAGAGAGAACTGTGAAAATAAAGCAATCATGTAATTGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8195919 103 - 15139346 CACATGACTATTATATCAAGTGGTTTCCTTGCTTT-TGAGGAGCTATTCAT-AAA-ACTTTTAGAGGATAGAGAGAACTATGAAAATAAAGCAATCATGTAATTGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6981138 103 - 7304997 CACATGACTATTACATCAAGCGGTTTCCTTGCTTT-TGAGGAGCTATTCAT-AAA-ACTTTTGGAGGATAGAGAGAACTATGAAAATAAAGCAATCATGTAATTGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397633 103 - 11631747 CACATGACTATTACATCAAGCAGTTTCCTTGCTTT-TGAGGAGCTATTCGT-AAA-ACTTTTGGAGGATAGAGAGAACTATGAAAATAAAGCAGTCATGTAACTGG i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1886294 105 + 4188776 CATATGACTATTATACCAAGTGGTTTCCATCCTTTATGAGGAGCCATTCAT-AAACATTTTTAGAGGACAAAGAGAACTATGAAAATAGATCAGTCATGTAATTTA i proCoq1.NW_012140747v1 I 1 C 0 s mm10.chr5 76432265 98 + 151834684 AATAAGGTTATCGTGTCAAGTGGTTTCTAACCATC-T--GGAGCTACTCAT-AAA-AGTTTTTAGAGAGA-AGAGAACTATG--TATAAATCAGTCAAGTAATTGG i mm10.chr5 C 0 I 15 s canFam3.chr13 48018013 102 + 63241923 CATATGACTATTCTACCAAGTGG-CTCCATCCTTC-AGAGCAACTATTCAT-AAA-AATGTTTGGATGCAGAGAAAACCATTAATATAGGTCAGTCATGTGATTGG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4113471 104 - 5279953 CACATGACTATTCTACCAAGTGGTTTCCATCCTTT-TGAGGAGCTATTCATGAAA-AATGGGGGAGGATACATAGAATTATGGAAATAGATCAGTCATGTAATTGA i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1796479 100 + 3286835 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=651711.000000 s hg38.chr4_KI270787v1_alt 81492 47 + 111943 ACTGTTCCTTATGGTACAAGGGTGGGAAGATGTAAGTTGGTCCTGCT s panTro5.chr4 119646132 42 - 194502333 ACTGTTCCTTATGGTACAAGGGTGGGAAGATG-----TGGTCCTGCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059564 42 - 195804263 ACTGTTCCTTATGGTACAAGGGTGGGAAGATG-----TGGTCCTGCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490796 42 - 17550833 ACTGTTCCTTATGGTACAAGGGTGGGAAGATG-----TAGTCCTGCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360934 47 - 118206036 ACTGTTCCTTATGGTACAAGGGTGGGAAGATGTAAGTTGGTCCTGCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111573346 47 - 190429646 ACTGTTCCTTATGGTACAAGGGTGTGAAGATATAAGTTGTTCCTGCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742531 47 - 189454096 ACTGTTCCTTATGGTACAAGGGTGTGAAGATATAAGTTGTTCCTGCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13309033 47 + 26754465 ACTGTTCCTTATGGTACAAGGGTGTGAAGATATAAGTTGTTCCTGCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210558 47 - 5137665 ACTGTTCCTTATGGTACAAGGGTGTGAAGATGTAAGTTGTTCCTGCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920465 47 - 135778131 ACTGTTCCTTATGGTACAAGGGTGTGAAGATGTAAGTCGTTCCTGCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2032255 47 + 2427316 ACTGTTCCTTATGGTACAAGGGTGTGAAGATGTAAGTTGTTCCTGCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327827 47 + 1448899 ACTGTTCCTTATGGTACAAGGGTGTGAAGATGTAAGTTGTTCCTGCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035935 47 - 190850796 ATCATTCCTTACAGTACAAGGGTATGAAGGTGTAAGTTGTTCCTGCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196022 47 - 15139346 ATCATTCCTTATGGTACAAGGGTATGAAGGTGTAAGTTGTTCCTGCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6981241 47 - 7304997 ATCGTTCCTTACAGGTCAAGGGTATGAAGGTGTAAGTTGTTCCTGCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397736 47 - 11631747 ATCGTTCCTTATGGTACAAGGGTATGAAGGTGTAAGTTGTTCCTGCT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1796579 47 + 3286835 ACTGTTCCTAATGGTACAAAGCTGTGAAGATGCAAGCTGTTCCTGCT i micMur3.chrUn_NW_017968520v1 I 100 C 0 s proCoq1.NW_012140747v1 1886399 47 + 4188776 ACTGTTCCTTATGGTACAAAGCTGTGAAGATGCAAGTTGTTCCTGCT i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76432378 47 + 151834684 GTCATTAATTGTAGTACAAAAATATTAAGATGCAAGCTGCTTTTGTT i mm10.chr5 I 15 I 358 s canFam3.chr13 48018115 47 + 63241923 CCTGTTCATTATAATAAGAGGCTGTGAAGATTCGAGTTCTTCCTGCT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4113575 47 - 5279953 ACTGTTTCTTACAGTACAAAGCTGTAAGGATGCAAGTTGTTCCTGCT i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8629523 5660 + 8790067 I a score=19110.000000 s hg38.chr4_KI270787v1_alt 81539 1 + 111943 T s panTro5.chr4 119646174 1 - 194502333 T i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059606 1 - 195804263 T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490838 1 - 17550833 T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360981 1 - 118206036 T i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111573393 1 - 190429646 T i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742578 1 - 189454096 T i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13309080 1 + 26754465 T i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210605 1 - 5137665 T i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920512 1 - 135778131 T i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2032302 1 + 2427316 T i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327874 1 + 1448899 T i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035982 1 - 190850796 T i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196069 1 - 15139346 T i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6981288 1 - 7304997 T i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397783 1 - 11631747 T i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1796626 1 + 3286835 T i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1886446 1 + 4188776 T i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76432783 1 + 151834684 T i mm10.chr5 I 358 C 0 s canFam3.chr13 48018162 1 + 63241923 T i canFam3.chr13 C 0 I 621 s dasNov3.JH568349 4113622 1 - 5279953 T i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8629523 5660 + 8790067 I a score=1158415.000000 s hg38.chr4_KI270787v1_alt 81540 75 + 111943 CAATATAAACATAAATTAAGGTTATCTTAAGATTATTTCCTGTTTATATTTACTATCCTGCTTGAAG-AAAAGAGA s panTro5.chr4 119646175 75 - 194502333 CAGTATAAACATAAATTAAGGTTATCTTAAAATCATTTCCTGTTTATATTTACTATCCTGCCTGAAG-AAAAGAGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059607 75 - 195804263 CAGTATAAACATAAATTAAGGTTATCTTAAAATCATTTCCTGTTTATATTTACTATCCTGCCTGAAG-AAAAGAGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490839 75 - 17550833 CAATATAAACATAAATTAAGGTTATCTTAAAATCATTTCCTGTTTATATTTGCTATCCTGCCTGAAG-AAAAGAGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69360982 75 - 118206036 CAATATAAACATAAATTAAGGTTATCTTAAAATCATTTCCTGTTTACATTTACTATCCTGCCTGAAG-AAAAGAGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111573394 75 - 190429646 TAATATGAATATAAATTAAGGTTATCTTAAAATCATTTCCTGTTTATATTTACTATCCTGCCTGAAG-AAAAGAGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742579 75 - 189454096 TAATATGAATATAAATTAAGGTTATCTTAAAATCATTTCCTGTTTATATTTACTATCCTGCCTGAAG-AAAAGAGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13309081 75 + 26754465 TAATATGAATATAAATTAAGGTTATCTTAAAATCATTTCCTGTTTATATTTACTATCCTGCCTGAAG-AAAAGAGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210606 75 - 5137665 TAATATAAATATAAATTAAGGTTATCTTAAAATCATTTCCTGTTTATATTTACTATCCTGCCTGAAG-AACAGAGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920513 75 - 135778131 TAATATAAATATAAATTAAGGTTATCTTAAAATCATTTCCTGTTTATATTTACTATCCTGCCTGAAG-AAAAGAGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2032303 75 + 2427316 TAATATAAATATAAATTAAGGTTATCTTGAAATCATTTCCTGTTTATATTTACTATGCTACCTGAAG-AACAGAGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327875 75 + 1448899 TAATATAAATATAAATTAAGGTTATCTTAAAATCATTTCCTGTTTATATTTACTATCCTGCCTGAAG-AAAAGAGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53035983 75 - 190850796 CAATATAAACATAAATTAAGGTTATCTTAAAATCATTTCCTCTTTATATTTACTATCCTGCCTGAAG-AAAAAAGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196070 75 - 15139346 CAATATAAACATAAATTAAGGTTATCTTAAAATTATTTCCTCTTTATATTTACTATCCTGCCTGAAG-AAAAAAGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6981289 76 - 7304997 CAATATAAACATAAATTGAGGTTATCTTAAAATCATTTCCTCTTTATATTTACTATCCTGCCTGAAGAAAAAAAGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397784 72 - 11631747 CAATATAAACAT---TTAAGGTTATCTTAAAATCATTTCCTCTTTATATTCACTATCCTGCCTGAAG-AAAAAAGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1796627 75 + 3286835 TAGTATAAACATAAACTGAGGTTGTCTTTAAATCATTTCCTATTTATATTTACTATCCTGCCTGCAG-AAAAGAGA i micMur3.chrUn_NW_017968520v1 C 0 I 705 s proCoq1.NW_012140747v1 1886447 75 + 4188776 TAATATAAACATAAACTGCAGTTATCTTAAAATCATTTTCTGTTTATATTTACTATCCTGCCTGCAG-AAAAGAGA i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76432784 72 + 151834684 TAATATAAGTAGAGATTGAGATTATCTTAAAATGATTCT---TGTGTGTTTGTTATCCTACTTGAAA-AACAGAGG i mm10.chr5 C 0 C 0 s canFam3.chr13 48018784 75 + 63241923 TAATATAAAGATAAACTGAGATTATTTAAAAATCACTTGCTGTTTATATTTACTATCCAGCTTGAAT-AGAATGAA i canFam3.chr13 I 621 C 0 s dasNov3.JH568349 4113623 69 - 5279953 ------TAATATAAACTGAGATTATTTTAAAATCATTTCCTGTTTATGTTTCTTAGCCAGCCTGAAG-AAAAGAGA i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8629523 5660 + 8790067 I a score=705091.000000 s hg38.chr4_KI270787v1_alt 81615 77 + 111943 TAACTGAAAGTCCACTGTGTTTGTCTATT-----ATATGACTCAGGTATACA-CA---GTCTACAGAGCTAAGTTTCAAC------AAAAAA---------- s panTro5.chr4 119646250 72 - 194502333 CACCTGAAAGTCCACTGTGTTTGTCTATC----------ACTCAGGTATACA-CA---GTCTACAGAGCTAAGTTTCAAC------AAAAAA---------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059682 72 - 195804263 CACCTGAAAGTCCACTGTGTTTGTCTATC----------ACTCAGGTATACA-CA---GTCTACAGAGCTAAGTTTCAAC------AAAAAA---------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490914 77 - 17550833 CACCTGAAAGTCCACTGTGTTTGTCTATT-----ATATCACTCAGGTATACA-CA---GTCTACAGAGCTAAGTTTCAAC------AAAAAA---------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69361057 77 - 118206036 CACCTGAAAGTCCACTGTGTTTGTCTATT-----ATATGACTCAGGTATACA-CA---GTCTACAGAGCTAAGTTTCAAC------AAAAAA---------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111573469 78 - 190429646 CACCTGAAAGTCCACTGTGTTAATCTATT-----ATATGACTCAGGTATACA-CA---GTCTACAGAGCTAAGTTTCAAC-----AAAAAAA---------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742654 78 - 189454096 CACCTGAAAGTCCACTGTGTTAATCTATT-----ATATGACTCAGGTATACA-CA---GTCTACAGAGCTAAGTTTCAAC-----AAAAAAA---------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13309156 78 + 26754465 CACCTGAAAGTCCACTGTGTTAATCTATT-----ATATGACTCAGGTATACA-CA---GTCTACAGAGCTAAGTTTCAAC-----AAAAAAA---------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210681 78 - 5137665 CACCTGAAAGTCCACTGTGTTTATCTATT-----ACATGACTCAGGTATACA-CA---GTCTACGGAGCTAAGTTTCAAC-----AAAAAAA---------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920588 83 - 135778131 CACCTGAAAGTCCACTGTGTTTATCTATT-----ATATGACTCAGGTATACA-CA---GTCTACAGAGCTAAGTTTCAACAACAAAAAAAAA---------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2032378 78 + 2427316 CACCTGAAAGTCCACTGTGTTTATCTATT-----ACATGACTCAGGTATACG-CA---GTCTACAGAGCTAAGTTTCAAC-----AAAAAAA---------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1327950 79 + 1448899 CACCTGAAAGTCCACTGTGTTTATCTATT-----ATATGACTCAGGTATACA-CA---GTCTACAGAGCTAAGTTTCAAC----AAAAAAAA---------- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53036058 75 - 190850796 CATCTGAAAGTCCACCGTGCTTGTCTATT-----ATATAACTCAGGGATACA-CA---GTCTACAGAGCTAAGTTTCAAC--------AAAA---------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196145 75 - 15139346 CATCTGAAAGTTCACTGTGTTTGTCTATT-----GTGTAACTCAGGGATACG-CA---GTCTACAGAGCTAAGTTTCAAC--------AAAA---------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6981365 73 - 7304997 CATCTGAAAGTCCAC--TGTTTGTCTATT-----ATATAACTCAGGAATACA-CA---GTCTACAGAGCTAAATTTCAAC--------AAAA---------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397856 75 - 11631747 CATCTGAAAGTCCACTGTGTTTGTCTTTT-----ATATAACTCAGGGATACA-TA---GTCTCCAGAGATAAGTTTCAAC--------AAAA---------- i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1886522 71 + 4188776 CATGTGAAAGTCCATTGTGT-------TT-----ATATGATTCGAGTATACAGTA---GTCTACAGAGCTAAGTCTCAAC------AAAAAA---------- i proCoq1.NW_012140747v1 C 0 I 88 s mm10.chr5 76432856 64 + 151834684 AATCTCAAAGTCCACAGTATTTGGC--------------ACTTAGGGATATG-CA----TCCAGAAACCAATGCATCTAC------TAA------------- i mm10.chr5 C 0 C 0 s canFam3.chr13 48018859 2 + 63241923 ------------------------------------------------TA---------------------------------------------------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4113692 93 - 5279953 CATTCATAAGTCCACTGTACTTATTTATTACCTGATATAATAAATAAATACA-GATGTGTCAACAGAACAAAATTTCAAC--------AAAATTTACAATAG i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=864030.000000 s hg38.chr4_KI270787v1_alt 81692 93 + 111943 ATATAATGTTGAAGAA----AGAGAGACTAATAACCCAC--AAAA--AGGT-GATAAACAGCTATGCCGATGTTGTCCTTATGCTCTCTGAGGGAAGAGATG s panTro5.chr4 119646322 93 - 194502333 ATATAATGTTGAAGAA----AGAGAGACTAATAACCCAT--AAAA--AGGT-GATAAACAGCTATGCTGATGTTGTCCTTATGCTCTCTGAGGGAAGAGATG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059754 93 - 195804263 ATATAATGTTGAAGAA----AGAGAGACTAATAACCCAT--AAAA--AGGT-GATAAACAGCTATGCTGATGTTGTCCTTATGCTCTCTGAGGGAAGAGATG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4490991 93 - 17550833 ATATAATGTTGAAGAA----AGAGAGACTAATAACCCAG--AAGA--AGGT-GATAAACAGCTATGCTGATGTTGTCCTTATGCTCTCTGAGGGAAGAGATG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69361134 92 - 118206036 ATATAATGTTGAAGAA----AGAGAGACTAATAACCCAC--AAAA--AGGT-GATAAACACCTACGCTGATGTTGT-CTTATGCTCTCTGAGGGAAGAGATG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111573547 89 - 190429646 ATGTAATGTTGAAGAA--------AGACTAATAACCCAT--TAAA--AGGT-GATAAACAGCTACACTGATGTTGTCCTTATGCTCTCCGAGGGAAGAGATG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742732 89 - 189454096 ATGTAATGTTGAAGAA--------AGACTAATAACCCAT--TAAA--AGGT-GATAAACAGCTACACTGATGTTGTCCTTATGCTCTCCGAGGGAAGAGATG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13309234 89 + 26754465 ATGTAATGTTGAAGAA--------AGACTAATAACCCAT--TAAA--AGGT-GATAAACAGCTACACTGATGTTGTCCTTATGCTCTCCGAGGGAAGAGATG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210759 89 - 5137665 ATGTAATGTTGAAGAA--------AGACTAATAACCCAT--AAAA--AGGT-GATAAACAGCTACACTGATGTTGTCCTTATGCTCTCCGAGGGAAGAGATG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920671 89 - 135778131 ATGGAATGTTGAAGAA--------AGACTAATAACCCAT--AAAA--AGGT-GATAAACAGCTACGCTGATGTTGTGCTTATGCTCTCCGAGGGAAGAGATG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2032456 89 + 2427316 ATGTAATGTTGAAGAA--------AGACTAATAACCCAT--AAAA--AGGT-GATAAACAGCTACGCTGATGTTGTCCTTATGCTCTCCGAGGGAAGAGATG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1328029 91 + 1448899 AAATAATGTTGAAGAA--------AGACTAATAACCCATAAAAAA--AGGT-GATAAACAGCTATGCTGATGTTGTCCTTATGCTCTCTGAGGGAAGAGATG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53036133 99 - 190850796 ATATCATGTTGAAGAAATAAAGTGAGACTAGTAACCCAT--AAAGGAAGGT-GATAAACAGCTACCTTGCTGTTGTCCTTATGCTCTCTGAGGGAAGAGATG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196220 96 - 15139346 ATACAATGTTGAAGAAATAAAGTGAGACTAATAACCCAT--AAAGGTAGGT-GATAAACAACCACCTTGA---TGTCCTTATGCTCTCTGAGGGAAGAGATG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6981438 96 - 7304997 ATATAATGGTGAAGAAATACAGTGAGACTAATAACCCAT--AAAGGTAGGT-GATAAACAGCTACCTTGA---TGCCCTTATGCTCTCTGAGGGAAGAGATG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9397931 99 - 11631747 ATATAATGTTGAAGAAATAAAGTGAGACTAATAACCCAT--AAAGGTAGGT-GATAAACAGCTACCTTGATGTTGCCCTTATGCTCTCTGAGGGAAGAGATA i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76432920 65 + 151834684 --ACTATGCTGGAGAG------GGAGAAGGGTGGGTCAT--AAGA--AGAC-AGCAAACTACAGC-------TGGTCCTTCTGTG----------------- i mm10.chr5 C 0 C 0 s canFam3.chr13 48018861 79 + 63241923 ---------GAAAGAA--------AAAATAATAACCCAT--GAAA--AGGTGGATAAATGACTACCTTTATGCTATCCTCAT--CATCTGAGGGAACAGGGC i canFam3.chr13 C 0 I 1 s dasNov3.JH568349 4113785 89 - 5279953 AGAGAATATAAACGGA---------GAATAAAAATCCAC--AAAA--AGGTAGCTGGATAACTACATTTCTGTTGTCCTTATGTTATGCAAATGAACAGAGC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1886593 88 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=1169681.000000 s hg38.chr4_KI270787v1_alt 81785 87 + 111943 -AGATAAGCCATAGTAGATCAATCAGGACATTGAAACCCTTGTTATGGAGACTCAGCAAGCCTTTTGCACACACTATAGACACTGCTG s panTro5.chr4 119646415 87 - 194502333 -AGATAAGCCATAGTAGATCAGTCAGGACATTCAAACCCTTGTTATGGAGACTCAGCAAGCCTTTTGCACACACTGTAGACACTGCTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059847 87 - 195804263 -AGATAAGCCATAGTAGATCAGTCAGGACATTCAAACCCTTGTTATGGAGACTCAGCAAGCCTTTTGCACACACTGTAGACACTGCTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4491084 87 - 17550833 -AGATAAGCCATAGTAGATCAATCAGGACATTCAAACCCTTGTTATGGAGACTCAGCAAGCCTTTTGCACACACTGTAGACACTGCTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69361226 81 - 118206036 -AGATAAGCCATAGTAGATCAATCGGGACATTGAAACCCTTGTTATGGAGACTCAGCAAGCCTTTTGCACACACTATAGACA------ i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111573636 87 - 190429646 -AGATAAGCCATAGTAGATCAATCAGGGCATTCAAACCCTTGTCATGGAGACTCAGCAAGCCTTTTGCACACACTATAGACACTGCTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742821 87 - 189454096 -AGATAAGCCATAGTAGATCAATCAGGGCATTCAAACCCTTGTCATGGAGACTCAGCAAGCCTTTTGCACACACTATAGACACTGCTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13309323 87 + 26754465 -AGATAAGCCATAGTAGATCAATCAGGGCATTCAAACCCTTGTCATGGAGACTCAGCAAGCCTTTTGCACACACTATAGACACTGCTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210848 87 - 5137665 -AGATAAGCTATAGTAGATCAATCAGGGCATTCAAACCCTTGTCATGGAGACTCAGCAAGCCTTTTGCACACACTATAGACACTGCTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920760 87 - 135778131 -AGATAAGCCATAGTAGATCAATCAGGGCATTCAAAGCCTTGTCATGGAGACTCAGCAAGCCTTTTGCACACACTATAGACACTGCTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2032545 87 + 2427316 -AGATAAGCCATAGTAGATCAATCAGGGCATTCAAACCCTTGTCATGGAGACTCAGCAAGCCTTTTGCACACACTATAGACACTGCTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1328120 87 + 1448899 -AGATAAGCCATAGTAGATCAATCAGGGCATTCAAACCCTTGTCATGGAGACTCAGCAAGCCTTTTGCACACACTATAGACACTGCTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53036232 87 - 190850796 -AGATAAGCCATGGTAGATCGATCAGGACATTCAAACCCTTGTCATGGAGATTCAGTAAGCCCTTTGCACACACCGTAGACACCTCTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196316 87 - 15139346 -AGATAAGCCATGGTAGATCAATCAGGACATTCAAACCCTTGTCATGGAGACCCAGTAAGCGTTTTGCACATACTGTAGACACTGCTG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6981534 87 - 7304997 -AGGTAATCCATTGTAGATCAATCAGGACATTCAAACCCTTGTCATGGAGACTCAGTAAGCCTTTTGCACACATTGTAGACACTGCTG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9398030 87 - 11631747 -AGATAAGCCATGGTAGGTCAATCAGGACATTCAAATCCTTGCCATGGAGACTCAGTAAGCCTTTTGCACACACTGTAGACACTGCTG i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1886681 87 + 4188776 -ACATAAACCATAGTAGATAACTCAGGGTGCTCAAATCTTTGTTATGGAGACTCAGCAAGCTTTTAACATACCGTATAGACAGTGCTG i proCoq1.NW_012140747v1 I 88 C 0 s mm10.chr5 76432985 86 + 151834684 -AAGGAATCTATTGTGGATGATGGACAACATGCAAATCATTGACAAGAAGACTCAGCAAGC-TTTTACACACAATGTAGATGTTGCTG i mm10.chr5 C 0 I 2972 s canFam3.chr13 48018941 85 + 63241923 -AGATAAACCACAGCAAATAATCCAGGACATTCATACCTTTGTCCTGGAGACTAGACAGGACTTCTGCACACACTGT--ATGCTGCTT i canFam3.chr13 I 1 C 0 s dasNov3.JH568349 4113874 88 - 5279953 ACAATAACCCATAGCTGGTAATTCAGGAAGCTGAGACCTCTGTCATGGAAACTTGGCTGGACTTCTGCACGCACTGTAGACACTGCTG i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=1420841.000000 s hg38.chr4_KI270787v1_alt 81872 121 + 111943 CGTCATCTTGAATTATGCAGTGTGTAAGTATTAAGAGCTGCCTAACATCTAAGCTAGTCCTATGCTGTTATAAGGTCAGAGATCAGGGTCCGAAAAACGGACTTA----------------------------TTAAAATTTAGtgagg s panTro5.chr4 119646502 121 - 194502333 CATCATCTTGAATTATGCAGTCTGCAAGTATTATGAGCTGCCTAACAGCTAAGCTAGTCCTATGCTGTTATAAGGTCAGAGATCAGGGTCCACAAAACGGACTTA----------------------------TTAAAATTTAGtgagg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121059934 121 - 195804263 CATCATCTTGAATTATGCAGTCTGCAAGTATTATGAGCTGCCTAACAGCTAAGCTAGTCCTATGCTGTTATAAGGTCAGAGATCAGGGTCCACAAAACGGACTTA----------------------------TTAAAATTTAGtgagg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4491171 121 - 17550833 CATCATCTTGAATTATGCAGTCTGCAAGTATTAAGAGCTGCCTAACAGCTAAGCTAGTCCTATGCTGTTATAAGGTCAGAGATCAGGGTCCAAAAAACGGACTTA----------------------------TTAAAATTTAGtgagg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69361307 116 - 118206036 ----ATCTTGAATTATGTAGTCTGCAAGTATTATGAGCTGCTTAACATCTAAGCTAGTCCTATGCTGTTATAAGGTCAGAGATCAGGGTCCAAAAAA-GGACTTA----------------------------TTAAAATGTAGtgagg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111573723 121 - 190429646 CGTCATCTTGAATTATGCAGTGTGGAAGTATTATGAGTTGCCTAACATCTAAGCTAGTCCTATGCTGTTATGAGGTCAGAGATTAGGGTCCAAAAAAGGGACTTA----------------------------TTAAAATTTAGtgagg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110742908 121 - 189454096 CGTCATCTTGAATTATGCAGTGTGGAAGTATTATGAGTTGCCTAACATCTAAGCTAGTCCTATGCTGTTATGAGGTCAGAGATTAGGGTCCAAAAAAGGGACTTA----------------------------TTAAAATTTAGtgagg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13309410 121 + 26754465 CGTCATCTTGAATTATGCAGTGTGGAAGTATTATGAGTTGCCTAACATCTAAGCTAGTCCTATGCTGTTATGAGGTCAGAGATTAGGGTCCAAAAAAGGGACTTA----------------------------TTAAAATTTAGtgagg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4210935 121 - 5137665 CGTCATCTTGAATTATGCAGTGTGGAAGTATTATGAGTTGCCTAACATCTAAGCTAGTCCTATGCTGTTATGAGGTCAGAGATTAGGGTCCAAAAAAGGGACTTA----------------------------CTAAAATTTAGtgagg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920847 121 - 135778131 CGTCATCCTGAATTATGCAGTGTGGAAGCATTATGAGTTGCCTAACATCTAAGCTAGTCCTATGCTGTTATGAGGTCAGAGATTAGGGTCCAAAAAAGGGACTTA----------------------------TTAACATTTAGtgagg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2032632 121 + 2427316 CGTCATCCTGAATTATGCAGTGTGGAAGTATTATGAGTTGCCTAACATCTAAGCTAGTCCTATGCTGTTATGAGGTCAGAGATCAGGGTCCAAAAAAGGGACTTA----------------------------TTAAAAGTTAGtgagg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1328207 121 + 1448899 CATCATCCTGAATTATGCAGTGTGGAAGTGTTATGAGTTGCCTAACATCTAAGCTAGTCCTATGCTGTTATGAGGTCAGAGATCAGGGTCCAAAAAAGGGACTTA----------------------------CTAAAATTTAGtgagg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53036319 120 - 190850796 TGTCATCTTGAATTATGCAGTGTAGAAGTATTACGAGCTCCCTAACGTCTAAGCTAGTCCTATGCTGTTATAAGGTCATAGACCAGGGTCCATAAGG-AGACTTA----------------------------CTAAAATTTAGtgagg i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196403 120 - 15139346 TGTCATCTTGAATTATGCAGTGTGGAAGTATTATGAGCTCCCTAACATCTAAGCTAGTCCTATGCTGTTATAAGGTCAGAGACCAGGGTCCATAAAG-AGACTTA----------------------------TTAAAATGTAGtgagg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6981621 118 - 7304997 TGTCGTCTTGAATTATGCAGTGTGGAAGTATTATGAGCTTCCTAACATCTAAGCTAGTCCTATGCTGTTATAAGATCAGAGACCAGGGTCCATAAAG-AGAC--A----------------------------TTAAAATTTAGtgagg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9398117 120 - 11631747 TGTCATCCTGAATTACGCAGTGTGGAAGTATTATGAGCTCCTTAACACCTAAGCCAGTCCTATGCTGTTATAAGATCAGAGACCAGGGTCCACAAAA-AGACTCA----------------------------CTAAAATTTAGGgagg i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1886768 121 + 4188776 TGTCATTTTGTATGATGCTGTGTTGAAACATTATGAGCTCCCGACCATCTAAGCTATTCCTATGTTGTTATAAGCTTAGGGTTTAGGGTCCAAGATAAAGACCTA----------------------------TTAAAATCTAGtgagc i proCoq1.NW_012140747v1 C 0 C 0 s canFam3.chr13 48019026 149 + 63241923 TGTCATCTTATATTATGCTGTGCTGAAATATTATGAACTCCCTAAGATCAAAGCTATTTCTATGCTTTTAAAATGTCAGAGTTTAAGGTCCAAGTAAAAGATCTAAGACCTTAGCAAAAGGAGGCTAAGACTTTTAAAATCTAGtgagg i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4113962 118 - 5279953 TGTCGTCTTCAATTTTGCCATGTTGAGGTATTGCAAATTACCTACAACTGAAGCTATTCCTATACTGTTAAAAGGTCAGAGTTTAGGCCCAAGAAAA---ATCTA----------------------------TCAAAATCTAGTGTGG i dasNov3.JH568349 C 0 I 413 e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=1352226.000000 s hg38.chr4_KI270787v1_alt 81993 117 + 111943 acatcatgctaagtgaaataagcccatcacaaaaggacaaaccctgtatgattcctcttatatgatgtacttagagtagtcaaattcat-agagaaagaaagcagaatagaggttacc s panTro5.chr4 119646623 117 - 194502333 acatcatgctaagtgaaataagcccatcacaaaaggataaaccctgtatgattcctcttatatgatgtacttagagtagtcaaattcat-agagaaagaaagcagaatagaggttacc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121060055 117 - 195804263 acatcatgctaagtgaaataagcccatcacaaaaggataaaccctgtatgattcctcttatatgatgtacttagagtagtcaaattcat-agagaaagaaagcagaatagaggttacc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4491292 110 - 17550833 acatcatgctaagtgaaataagcccatcacaaaaggataaaccctgtatgattcctcttatatgatgtact--------tcaaattcataagagaaagaaagcagaatagaggttacc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69361423 117 - 118206036 acatcatgctaagtgaaataaacccaccacaaaaggacaaaccctgtatgattcctcttatatgatgtacttagagtagtcaaattcgt-agagaaagaaaacagaatagaggttacc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111573844 110 - 190429646 acatcatgctaagtgaaataagcccatcacaaaaggacaaaccctatatgattcctcctatatgatgtacttagagtagtcaaattcat-agagaaagaaagcagaataga------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743029 110 - 189454096 acatcatgctaagtgaaataagcccatcacaaaaggacaaaccctatatgattcctcctatatgatgtacttagagtagtcaaattcat-agagaaagaaagcagaataga------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13309531 117 + 26754465 acatcatgctaagtgaaataagcccatcacaaaaggacaaaccctatatgattcctcctatatgatgtacttagagtagtcaaattcat-agagaaagaaagcagaatagaggttacc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4211056 117 - 5137665 acatcatgctaagtgaaataagcccatcacaaaaggacaaaccctatatgattcctcctatatgatgtacttagagtagtcaaattcat-agagaaagaaagcagaatagaggttacc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122920968 117 - 135778131 acatcatgctaagtgaaataagcccatcacaaaacgacaaaccctatatgattcctcctatatgatgtacttagagtagtcaaattcat-agagaaagaaagcagaatagaggttgcc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2032753 117 + 2427316 acatcatgctaagtgaaataagcccatcacaaaaggacaaaccctatatgattcctcctatatgatgtacttagagtagtcaaattcat-agagaaagaaagcagaatagaggttacc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1328328 117 + 1448899 acatcatgctaagtgaaataagcccatcacaaaaggacaaaccctatatgattcctcctatatgatgtacttagagtagtcaaattcat-agagaaagaaagcagaatagaggttact i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53036439 117 - 190850796 acatcatgctaagtgaaataagcccatcaccaaagggcaaaccctgtatggttctagtgatatgatgtacttagagaagtcaaattcat-agagaaagaaggcataatagaggttacc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196523 117 - 15139346 acatcatgctaagtgaaataagtccatcacaaaagggcaaaccctgtatgattctagttttatgatgtacttagaggagtccaattcat-agagaaagaatgcataatagaggttacc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6981739 117 - 7304997 acatcatgctaagtgaaataagcccatcacaaaagggcaaaccctgtatgattctagttatatgatgtacttagaggagtcaaattcat-agagaaagaaggcataatagaggttacc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9398237 117 - 11631747 acatcatgctaagtgaaataagcccatcacaaaagggcaaaccctgtatgattctagttatatgatgtacttagaggagtcaaattcat-agagaaagaatgtgtaatagaggttacc i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1886889 116 + 4188776 acat-atgctaagtgaaataagccagtcacaaaaggacaaatgccgcatgattccacttatatgaggtacttagagtagttatattcaa-agagacagagagcagaatagaagttacc i proCoq1.NW_012140747v1 C 0 I 244 s canFam3.chr13 48019175 114 + 63241923 acattatg-tgagtgcaataagccagacacaaaaggacaaatat--tatgattctactgatatgagctacctgaaataatcaaattcat-agagacagaaagtacaatagagggtgcc i canFam3.chr13 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e dasNov3.JH568349 4114080 413 - 5279953 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=1838331.000000 s hg38.chr4_KI270787v1_alt 82110 171 + 111943 gggggtttggggaaag------gaaaatgggaggtt-------aatgggtacagatg-tcattt-ggaatgac-----aagttctggagatggatggtgttgatggctgcacaatatgaa--tgtacttaataccactgaactgtatact-taaaatggtttaaatggtcaattttatgttgtgtatattttac s panTro5.chr4 119646740 171 - 194502333 aggggtttggggaagg------gaaaatgggaggtt-------aataggtacagatg-tcattt-ggaatgac-----aagttctggagatggatggtgttgatggctgcacaatatgaa--tgtacttaataccacagaactgtacact-taaaatcgttaaaatggtcaattttatgttgtgtatattttac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121060172 171 - 195804263 aggggtttggggaagg------gaaaatgggaggtt-------aataggtacagatg-tcattt-ggaatgac-----aagttctggagatggatggtgttgatggctgcacaatatgaa--tgtacttaataccactgaactgtacact-taaaatcgttaaaatggtcaattttatgttgtgtatattttac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4491402 170 - 17550833 aggggtttggggaagg------gaaaatgggaggtt-------agtaggtacagatg-tcattt-ggaatgac-----aagttctggagatggatggtgttgatggctgc-caatatgaa--cgtacttaataccactgaaccgtacact-taaaatcgttaaaatggtcaattttatgttgtgtatattttac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69361540 171 - 118206036 aggggcttggggaagg------gaaaatgcggggtt-------aattggtacagatg-tcattt-ggaatgac-----aagttctggaaatggatggtgttgatggctgcacaatatgaa--tgtacttaataccactgaactgtacact-taaaatggttaaaatggtcagttttatgttgtgtatattttac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111573954 168 - 190429646 ---ggtttggggaagg------gaaaatggggggtt-------aatgggtacagatg-tcattt-ggaatgac-----aagttctggagatggatggtgttgatggctgcacaatatgaa--tgtacttaataccactgaactgtacact-taaaatggttaaaacggtcaattttatgttgtgtatattttac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743139 168 - 189454096 ---ggtttggggaagg------gaaaatgggggatt-------aatgggtacagatg-tcattt-ggaatgac-----aagttctggagatggatggtgttgatggctgcacaatatgaa--tgtacttaataccactgaactgtacact-taaaatggttaaaacggtcaattttatgttgtgtatattttac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13309648 171 + 26754465 aggggtttggggaagg------gaaaatggggggtt-------aatgggtacagatg-tcattt-ggaatgac-----aagttctggagatggatggtgttgatggctgcacaatatgaa--tgtacttaataccactgaactgtacact-taaaatggttaaaacggtcaattttatgttgtgtatattttac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4211173 171 - 5137665 aggggtttggggaagg------gaaaatggggggtt-------aatgggtacagatg-tcattt-ggattgac-----aagttctggagatggatggtgttgatggctgcacaatatgaa--tgtacttaataccaccgaactgtacact-taaaatggttaaaacggtcaattttatgttgtgtatattttac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921085 171 - 135778131 aggggtttggggaagg------gcaaacggggggtt-------aatgggtacagatg-tcattt-ggactgac-----aggttctggagatggatggtgttgatggctgcacaatatgaa--tgtacttaataccactgaactgtacact-taaaatggttaacacagtccattttatgttgtgtatattttac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2032870 171 + 2427316 aggggtttggggaagg------gaaaatggggggtt-------aatgggtacagatg-tcattt-ggaatgac-----aagttctggagatggatggtgttgatggctgcacaatatgaa--tgtacttaataccactgaactgtacact-taaaatggttaaaacggtcaattttatgttgtgtatattttac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1328445 171 + 1448899 aggggtttggggaagg------gaaaatggggggtt-------aatgggtacagatg-tcattt-ggaatgac-----aagttctggagatggatggtgttgatggctgcacaatatgaa--tgtacttaataccactgaactgtacact-taaaatggttaaaatggtcaattttatgttgtctatattttac i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53036556 171 - 190850796 aggggcttagggaagg------gaaaatgaggggtt-------aatgggtgcagatg-tcattt-ggaatgac-----aagttctggagatggatggtgttgatggctgcacaacatgaa--tatacttaataccactgaactatacact-taaaatggttaaaatcatcaattttatgttgtatatatttcac i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196640 171 - 15139346 aggggtttagggaagg------gaaaatgaggggct-------aacaggtgcagatg-tcattt-ggaatgac-----aagttctggagatggacgctgttgatggctgcacaacatgaa--tatacttaataccactaaactgtacact-taaaatggttaaaatcatcagttttatgtcgtacatattttac i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6981856 171 - 7304997 aggggcttagggaagg------gaaaatgaggggtt-------aacgggtgcagatg-tcattt-agaatgac-----aagttcaggagatggacactgttgatggctgcacaacatgaa--tatacttaataccactgaactgtacact-taaaatggttaaaatcattaattttatgttgtgtatattttac i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9398354 171 - 11631747 aggggcttagggaagg------gaaaatgaggggtt-------aatgggtgcacatg-tcattt-ggaatgac-----aagttctggagatggacgctgttgatggctgcacaacatgaa--tatacttaataccactgaactgtacact-tgaaatggttaaaataatcaattttatgttgcgtatattttac i aotNan1.NW_018493494v1 C 0 I 10 s canFam3.chr13 48019289 193 + 63241923 -agggaaaggggaagatggggtgggaatggggagttagtgttcaatgggtacagagattcatttggggatgacaaaaaaagttctagagaaagacagtggcaatggttgcataacaacacattgtacttaatgccactcaattgtacactaaaaaatggttaaaatggtaaattttatgttatgcatgttttac i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e dasNov3.JH568349 4114080 413 - 5279953 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=45840.000000 s hg38.chr4_KI270787v1_alt 82281 4 + 111943 caca s panTro5.chr4 119646911 4 - 194502333 caca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121060343 4 - 195804263 caca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4491572 4 - 17550833 caca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69361711 4 - 118206036 caca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574122 4 - 190429646 caca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743307 4 - 189454096 caca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13309819 4 + 26754465 caca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4211344 4 - 5137665 caca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921256 4 - 135778131 caca i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2033041 4 + 2427316 caca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1328616 4 + 1448899 caca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53036727 4 - 190850796 caca i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196811 4 - 15139346 caca i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982027 4 - 7304997 caca i cebCap1.NW_016107439v1 C 0 C 0 s canFam3.chr13 48019482 4 + 63241923 caca i canFam3.chr13 C 0 I 49 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e dasNov3.JH568349 4114080 413 - 5279953 I e aotNan1.NW_018493494v1 9398525 10 - 11631747 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=19110.000000 s hg38.chr4_KI270787v1_alt 82285 2 + 111943 at s panTro5.chr4 119646915 2 - 194502333 at i panTro5.chr4 C 0 C 0 s panPan2.chr4 121060347 2 - 195804263 at i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4491576 2 - 17550833 at i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69361715 2 - 118206036 at i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574126 2 - 190429646 at i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743311 2 - 189454096 at i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13309823 2 + 26754465 at i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4211348 2 - 5137665 at i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921260 2 - 135778131 at i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2033045 2 + 2427316 at i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1328620 2 + 1448899 at i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53036731 2 - 190850796 at i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196815 2 - 15139346 at i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982031 2 - 7304997 at i cebCap1.NW_016107439v1 C 0 I 7 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e dasNov3.JH568349 4114080 413 - 5279953 I e aotNan1.NW_018493494v1 9398525 10 - 11631747 I e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I a score=544620.000000 s hg38.chr4_KI270787v1_alt 82287 100 + 111943 -----aaaaaaaaTCTAggccgggcacagtggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcacgaggtcaggagttcaagaccagcc s panTro5.chr4 119646917 102 - 194502333 ---aaaaaaaaAATCTAGTccgggcacggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcacaaggtcaggagttcaagacccacc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121060349 101 - 195804263 ----aaaaaaaaATCTAGTccgggcacggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcacaaggtcaggagttcaagacccacc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4491578 102 - 17550833 ---aaaaaaaaAATCTAggccgggcacggtggctcacgcctgtaattccagcactttgggaggccaagacaggtggatcacaaggtcaggagttcaagacctgcc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69361717 101 - 118206036 ----aaaaaaaaATCTAggccaggtgcagaggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacaaggtcagaagttcaagaccagcc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574128 104 - 190429646 -aaaaaaaCAAAATCTAggcctggtgtggtggctcacgcctgtaatcccagcactttgggggggtgaggtgggtggatcacaaggtcaggagttcaagaccagcc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743313 104 - 189454096 -aaaaaaaCAAAATCTAggccaggtgcagtggctcacgcctgtaatcccagcactttgggggggtgaggtgggtggatcacaaggtcaggagttcaagaccagcc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13309825 104 + 26754465 -aaaaaaaCAAAATCTAggccaggtgcggtggctcacgcctgtaatcccagcactttgggggggtgaggtgggtggatcacaaggtcaggagttcaagaccagcc i macNem1.NW_012012466v1 C 0 I 141 s cerAty1.NW_012001307v1 4211350 104 - 5137665 -aaaaaaaCAAAATCTAggccaggtgcggtggctcacgcctgtaatcccagcactttggggggctgaggtgggtggatcacaaggtcaggagttcaagaccagcc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921262 105 - 135778131 aaaaaaaaCAAAATCTAggccaggtgcggtggctcacgcctgtaatcccagcactttggggggctgaggtgggtggatcacaaggtcaggagttcaagaccagcc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2033047 104 + 2427316 -aaaaaaaCAAAATCTAggccaggtgcggtggctcacgcctgtaatcccagcactttggggggctgaggtgggtggatcacaaggtcaggaattcaagaccagcc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1328622 104 + 1448899 -agaaaaaCAAAATCTAggccaggtgtggtggctcacgcctgtaatcccagcaccttgggaggctgaggtgggtggatcacaaggtcaggagttcaagactggcc i colAng1.NW_012119221v1 C 0 C 0 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e dasNov3.JH568349 4114080 413 - 5279953 I e aotNan1.NW_018493494v1 9398525 10 - 11631747 I e cebCap1.NW_016107439v1 6982033 7 - 7304997 I e saiBol1.JH378162 8196817 0 - 15139346 C e calJac3.chr3 53036733 0 - 190850796 C e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I a score=344198.000000 s hg38.chr4_KI270787v1_alt 82387 81 + 111943 tggccaacatggtgaaaccccgtctctacaaaaaatac---aaaaaaattagccgagcatgggagcgggcacctgtaatcccag s panTro5.chr4 119647019 81 - 194502333 tggccaacatggtgaaaccctgtctctacaaaaaatac---aaaaaaattagccgggtgtggtagcgggcacctgtaatcccag i panTro5.chr4 C 0 C 0 s panPan2.chr4 121060450 81 - 195804263 tggccaacatggtgaaaccctgtctctacaaaaaatac---aaaaaaattagccgggtgtggtagcgggcacctgtaatcccag i panPan2.chr4 C 0 M 3391 s gorGor5.CYUI01014963v1 4491680 81 - 17550833 tggccaacatggtgaaaccctgtctctacaaaaaatac---aaaaaaattagccgggtgtggtagcgggcacctgtaatcccag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69361818 81 - 118206036 tggccaacatggtgaaaccccgtctctactaaaaatac---aaaaaaattagccaggcatggtggagggcacctgcaatcccag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574232 84 - 190429646 tggccaacatggtgaaaccccgtctctactgaaaatacaaaaaaaaaattagccaggcatggtggcaggcacctgtaatcccag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743417 83 - 189454096 tggccaacatggtgaaaccccgtctctactgaaaatac-aaaaaaaaattagccaggcatggtggcaggcacctgtaatcccag i macFas5.chr5 C 0 C 0 s cerAty1.NW_012001307v1 4211454 83 - 5137665 tgaccaacatggtgaaaccccgtctcta-tgaaaatacaaaaaaaaaattagccaggcatggtggcaggcacctgtaatcccag i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921367 82 - 135778131 tggccaacatggtgaaaccctgtctcta-ctgaaaatc-caaaaataattagccaggcatggtggcaggcacctgtaatcccag i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2033151 82 + 2427316 tggccaacatggtgaaaccccgtctcta-tgaaaatac-aaaaaaaaattagccaggcatggtggcaggcacctgtaatcccag i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1328726 82 + 1448899 tggccaacatggtgaaaccccgtctctactgaaaatac--aaaaaaaattagccaggcatggtgggaggcacctgtaatcccag i colAng1.NW_012119221v1 C 0 C 0 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e dasNov3.JH568349 4114080 413 - 5279953 I e aotNan1.NW_018493494v1 9398525 10 - 11631747 I e cebCap1.NW_016107439v1 6982033 7 - 7304997 I e saiBol1.JH378162 8196817 0 - 15139346 C e calJac3.chr3 53036733 0 - 190850796 C e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I e macNem1.NW_012012466v1 13309929 141 + 26754465 I a score=17190.000000 s hg38.chr4_KI270787v1_alt 82468 4 + 111943 ctac s panTro5.chr4 119647100 4 - 194502333 ctac i panTro5.chr4 C 0 I 2854 s gorGor5.CYUI01014963v1 4491761 4 - 17550833 ctac i gorGor5.CYUI01014963v1 C 0 I 917 s nomLeu3.chr9 69361899 4 - 118206036 ctac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574316 4 - 190429646 ctac i rheMac8.chr5 C 0 I 107 s macFas5.chr5 110743500 4 - 189454096 ctac i macFas5.chr5 C 0 C 0 s cerAty1.NW_012001307v1 4211537 4 - 5137665 ctac i cerAty1.NW_012001307v1 C 0 I 112 s chlSab2.chr7 122921449 4 - 135778131 ctac i chlSab2.chr7 C 0 I 112 s manLeu1.NW_012104388v1 2033233 4 + 2427316 ctac i manLeu1.NW_012104388v1 C 0 I 115 s colAng1.NW_012119221v1 1328808 4 + 1448899 ctac i colAng1.NW_012119221v1 C 0 I 143 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e dasNov3.JH568349 4114080 413 - 5279953 I e aotNan1.NW_018493494v1 9398525 10 - 11631747 I e cebCap1.NW_016107439v1 6982033 7 - 7304997 I e saiBol1.JH378162 8196817 0 - 15139346 C e calJac3.chr3 53036733 0 - 190850796 C e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I e macNem1.NW_012012466v1 13309929 141 + 26754465 I e panPan2.chr4 121060531 3391 - 195804263 M a score=10713.000000 s hg38.chr4_KI270787v1_alt 82472 46 + 111943 ac----------------------------tccaag---------------------------------ctgcactccagcttggcaacagaatgagactccatctc s nomLeu3.chr9 69361903 107 - 118206036 tcgggaggctgagacagagaattgctcgaacccaggaggcggagatttcagtgagccgaaatcatgccactgcactccagcctggcaacagagtgagactccatctc i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110743504 107 - 189454096 tcgggaggctgaggcagagaattgcttgaacccaggaggcgcagattacagtgagccaaaatcgcaccactgcactccagcctggcaatagagcgagactccatctc i macFas5.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e dasNov3.JH568349 4114080 413 - 5279953 I e aotNan1.NW_018493494v1 9398525 10 - 11631747 I e cebCap1.NW_016107439v1 6982033 7 - 7304997 I e saiBol1.JH378162 8196817 0 - 15139346 C e calJac3.chr3 53036733 0 - 190850796 C e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I e panTro5.chr4 119647104 2854 - 194502333 I e colAng1.NW_012119221v1 1328812 143 + 1448899 I e manLeu1.NW_012104388v1 2033237 115 + 2427316 I e chlSab2.chr7 122921453 112 - 135778131 I e cerAty1.NW_012001307v1 4211541 112 - 5137665 I e macNem1.NW_012012466v1 13309929 141 + 26754465 I e rheMac8.chr5 111574320 107 - 190429646 I e gorGor5.CYUI01014963v1 4491765 917 - 17550833 I e panPan2.chr4 121060531 3391 - 195804263 M a score=5225.000000 s hg38.chr4_KI270787v1_alt 82518 41 + 111943 aaaataaataaatatatttatatattcaaaataaataaata s gorGor5.CYUI01014963v1 4492682 41 - 17550833 AAAATAAATATATTTGTTTATATATTTAAAATAAATATATT i gorGor5.CYUI01014963v1 I 917 C 0 s nomLeu3.chr9 69362010 30 - 118206036 aaaataaataaataaat-----------aaataaataaata i nomLeu3.chr9 C 0 C 0 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e dasNov3.JH568349 4114080 413 - 5279953 I e aotNan1.NW_018493494v1 9398525 10 - 11631747 I e cebCap1.NW_016107439v1 6982033 7 - 7304997 I e saiBol1.JH378162 8196817 0 - 15139346 C e calJac3.chr3 53036733 0 - 190850796 C e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I e panTro5.chr4 119647104 2854 - 194502333 I e colAng1.NW_012119221v1 1328812 143 + 1448899 I e manLeu1.NW_012104388v1 2033237 115 + 2427316 I e chlSab2.chr7 122921453 112 - 135778131 I e cerAty1.NW_012001307v1 4211541 112 - 5137665 I e macNem1.NW_012012466v1 13309929 141 + 26754465 I e rheMac8.chr5 111574320 107 - 190429646 I e macFas5.chr5 110743611 0 - 189454096 C e panPan2.chr4 121060531 3391 - 195804263 M a score=11754.000000 s hg38.chr4_KI270787v1_alt 82559 165 + 111943 tatttatatattcaaaataaataaatatattttatatatctaaaataaataaatatatttatttatatatctaaaataaatgaatatatttattgatatatctaaaataaataaatatatttatttatatatctaaaataaataaatatacttatttatatattt s gorGor5.CYUI01014963v1 4492723 163 - 17550833 TGTTTATATATTTAAAATAAATATATTTGTTT-ATATATTTAAAATAAATAAATATATTTGTTTATATATTTAAAATAAATAAATATATTTGTTTATATATTTAAAATAAATAAATATATTTGTTTATATATTTAAA-TAAATAAATATATTTGTTTATATATTT i gorGor5.CYUI01014963v1 C 0 C 0 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e dasNov3.JH568349 4114080 413 - 5279953 I e aotNan1.NW_018493494v1 9398525 10 - 11631747 I e cebCap1.NW_016107439v1 6982033 7 - 7304997 I e saiBol1.JH378162 8196817 0 - 15139346 C e calJac3.chr3 53036733 0 - 190850796 C e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I e panTro5.chr4 119647104 2854 - 194502333 I e nomLeu3.chr9 69362040 0 - 118206036 C e colAng1.NW_012119221v1 1328812 143 + 1448899 I e manLeu1.NW_012104388v1 2033237 115 + 2427316 I e chlSab2.chr7 122921453 112 - 135778131 I e cerAty1.NW_012001307v1 4211541 112 - 5137665 I e macNem1.NW_012012466v1 13309929 141 + 26754465 I e rheMac8.chr5 111574320 107 - 190429646 I e macFas5.chr5 110743611 0 - 189454096 C e panPan2.chr4 121060531 3391 - 195804263 M a score=1365.000000 s hg38.chr4_KI270787v1_alt 82724 1 + 111943 a s gorGor5.CYUI01014963v1 4492886 1 - 17550833 A i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111574427 1 - 190429646 a i rheMac8.chr5 I 107 C 0 s macFas5.chr5 110743611 1 - 189454096 a i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310070 1 + 26754465 a i macNem1.NW_012012466v1 I 141 C 0 s dasNov3.JH568349 4114493 1 - 5279953 a i dasNov3.JH568349 I 413 C 0 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e aotNan1.NW_018493494v1 9398525 10 - 11631747 I e cebCap1.NW_016107439v1 6982033 7 - 7304997 I e saiBol1.JH378162 8196817 0 - 15139346 C e calJac3.chr3 53036733 0 - 190850796 C e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I e panTro5.chr4 119647104 2854 - 194502333 I e nomLeu3.chr9 69362040 0 - 118206036 C e colAng1.NW_012119221v1 1328812 143 + 1448899 I e manLeu1.NW_012104388v1 2033237 115 + 2427316 I e chlSab2.chr7 122921453 112 - 135778131 I e cerAty1.NW_012001307v1 4211541 112 - 5137665 I e panPan2.chr4 121060531 3391 - 195804263 M a score=1694.000000 s hg38.chr4_KI270787v1_alt 82725 1 + 111943 a s gorGor5.CYUI01014963v1 4492887 1 - 17550833 A i gorGor5.CYUI01014963v1 C 0 C 0 s rheMac8.chr5 111574428 1 - 190429646 a i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743612 1 - 189454096 a i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310071 1 + 26754465 a i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4211653 1 - 5137665 a i cerAty1.NW_012001307v1 I 112 C 0 s chlSab2.chr7 122921565 1 - 135778131 a i chlSab2.chr7 I 112 C 0 s dasNov3.JH568349 4114494 1 - 5279953 g i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e aotNan1.NW_018493494v1 9398525 10 - 11631747 I e cebCap1.NW_016107439v1 6982033 7 - 7304997 I e saiBol1.JH378162 8196817 0 - 15139346 C e calJac3.chr3 53036733 0 - 190850796 C e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I e panTro5.chr4 119647104 2854 - 194502333 I e nomLeu3.chr9 69362040 0 - 118206036 C e colAng1.NW_012119221v1 1328812 143 + 1448899 I e manLeu1.NW_012104388v1 2033237 115 + 2427316 I e panPan2.chr4 121060531 3391 - 195804263 M a score=6552.000000 s hg38.chr4_KI270787v1_alt 82726 2 + 111943 aa s gorGor5.CYUI01014963v1 4492888 2 - 17550833 AA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362040 2 - 118206036 aa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574429 2 - 190429646 aa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743613 2 - 189454096 aa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310072 2 + 26754465 aa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4211654 2 - 5137665 aa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921566 2 - 135778131 aa i chlSab2.chr7 C 0 C 0 s dasNov3.JH568349 4114495 2 - 5279953 aa i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e aotNan1.NW_018493494v1 9398525 10 - 11631747 I e cebCap1.NW_016107439v1 6982033 7 - 7304997 I e saiBol1.JH378162 8196817 0 - 15139346 C e calJac3.chr3 53036733 0 - 190850796 C e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I e panTro5.chr4 119647104 2854 - 194502333 I e colAng1.NW_012119221v1 1328812 143 + 1448899 I e manLeu1.NW_012104388v1 2033237 115 + 2427316 I e panPan2.chr4 121060531 3391 - 195804263 M a score=-864.000000 s hg38.chr4_KI270787v1_alt 82728 1 + 111943 -t s panTro5.chr4 119649958 1 - 194502333 -T i panTro5.chr4 I 2854 C 0 s gorGor5.CYUI01014963v1 4492890 1 - 17550833 -T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362042 1 - 118206036 -t i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574431 1 - 190429646 -t i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743615 1 - 189454096 -t i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310074 1 + 26754465 -t i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4211656 1 - 5137665 -t i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921568 1 - 135778131 -t i chlSab2.chr7 C 0 C 0 s dasNov3.JH568349 4114497 1 - 5279953 a- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e aotNan1.NW_018493494v1 9398525 10 - 11631747 I e cebCap1.NW_016107439v1 6982033 7 - 7304997 I e saiBol1.JH378162 8196817 0 - 15139346 C e calJac3.chr3 53036733 0 - 190850796 C e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I e colAng1.NW_012119221v1 1328812 143 + 1448899 I e manLeu1.NW_012104388v1 2033237 115 + 2427316 I e panPan2.chr4 121060531 3391 - 195804263 M a score=15015.000000 s hg38.chr4_KI270787v1_alt 82729 3 + 111943 aaa s panTro5.chr4 119649959 3 - 194502333 AAA i panTro5.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4492891 3 - 17550833 AAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362043 3 - 118206036 aaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574432 3 - 190429646 aaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743616 3 - 189454096 aaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310075 3 + 26754465 aaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4211657 3 - 5137665 aaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921569 3 - 135778131 aaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2033352 3 + 2427316 aaa i manLeu1.NW_012104388v1 I 115 C 0 s dasNov3.JH568349 4114498 3 - 5279953 aaa i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e aotNan1.NW_018493494v1 9398525 10 - 11631747 I e cebCap1.NW_016107439v1 6982033 7 - 7304997 I e saiBol1.JH378162 8196817 0 - 15139346 C e calJac3.chr3 53036733 0 - 190850796 C e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I e colAng1.NW_012119221v1 1328812 143 + 1448899 I e panPan2.chr4 121060531 3391 - 195804263 M a score=26645.000000 s hg38.chr4_KI270787v1_alt 82732 13 + 111943 taaataaatatat s panTro5.chr4 119649962 13 - 194502333 TAAAATAATATGT i panTro5.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4492894 7 - 17550833 T------ATATGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362046 13 - 118206036 taaataaataaat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574435 13 - 190429646 taaaTAAGTAAAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743619 13 - 189454096 taaaTAAGTAAAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310078 13 + 26754465 taaaTAAGTAAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4211660 13 - 5137665 TAAGTAAGTAAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921572 13 - 135778131 TAGGTAAGTAAAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2033355 13 + 2427316 TAAGTAAGTAAAT i manLeu1.NW_012104388v1 C 0 C 0 s calJac3.chr3 53036733 7 - 190850796 taaaaaa------ i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196817 7 - 15139346 ttaaaaa------ i saiBol1.JH378162 C 0 C 0 s dasNov3.JH568349 4114501 13 - 5279953 taaataaatatat i dasNov3.JH568349 C 0 I 7 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e aotNan1.NW_018493494v1 9398525 10 - 11631747 I e cebCap1.NW_016107439v1 6982033 7 - 7304997 I e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I e colAng1.NW_012119221v1 1328812 143 + 1448899 I e panPan2.chr4 121060531 3391 - 195804263 M a score=94202.000000 s hg38.chr4_KI270787v1_alt 82745 12 + 111943 atataGTGAGTA s panTro5.chr4 119649975 12 - 194502333 ATATAGTGAGTA i panTro5.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4492901 12 - 17550833 ATATAATGAGTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362059 12 - 118206036 aTCTAGTGAGTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574448 12 - 190429646 ATCTAGTGAGTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743632 12 - 189454096 ATCTAGTGAGTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310091 12 + 26754465 ATCTAGTGAGTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4211673 12 - 5137665 ATCTAGTGAGTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921585 12 - 135778131 ATCTAGTGAGTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2033368 12 + 2427316 ATCTAGTGAGTA i manLeu1.NW_012104388v1 C 0 C 0 s calJac3.chr3 53036740 12 - 190850796 aTACAGTGAGTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196824 12 - 15139346 aTACAGTGAGTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982040 12 - 7304997 aTACAGTGAGTA i cebCap1.NW_016107439v1 I 7 C 0 s aotNan1.NW_018493494v1 9398535 12 - 11631747 aTATAGTGAGTA i aotNan1.NW_018493494v1 I 10 C 0 s dasNov3.JH568349 4114521 12 - 5279953 aTCTAGTGTGGA i dasNov3.JH568349 I 7 C 0 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I e colAng1.NW_012119221v1 1328812 143 + 1448899 I e panPan2.chr4 121060531 3391 - 195804263 M a score=41510.000000 s hg38.chr4_KI270787v1_alt 82757 7 + 111943 AAAAAAT-------------- s panTro5.chr4 119649987 6 - 194502333 AAAAA-T-------------- i panTro5.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4492913 7 - 17550833 AAAAAAT-------------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362071 7 - 118206036 CACAAAT-------------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574460 7 - 190429646 AAAAAAT-------------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743644 7 - 189454096 AAAAAAT-------------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310103 7 + 26754465 AAAAAAT-------------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4211685 7 - 5137665 AAAAAAT-------------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921597 7 - 135778131 AAAAAAT-------------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2033380 7 + 2427316 AAAAAAT-------------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1328955 7 + 1448899 AAAAAAT-------------- i colAng1.NW_012119221v1 I 143 C 0 s calJac3.chr3 53036752 7 - 190850796 AAAAAAT-------------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196836 7 - 15139346 AAAAAAT-------------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982052 7 - 7304997 AAAAAAT-------------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9398547 7 - 11631747 AAAAAAT-------------- i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4114533 16 - 5279953 -----ATTCATTACTCATTAG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48019486 49 + 63241923 I e panPan2.chr4 121060531 3391 - 195804263 M a score=10495.000000 s hg38.chr4_KI270787v1_alt 82764 2 + 111943 AT s panTro5.chr4 119649993 2 - 194502333 AT i panTro5.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4492920 2 - 17550833 AT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362078 2 - 118206036 AT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574467 2 - 190429646 AT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743651 2 - 189454096 AT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310110 2 + 26754465 AT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4211692 2 - 5137665 AT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921604 2 - 135778131 AT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2033387 2 + 2427316 AT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1328962 2 + 1448899 AT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53036759 2 - 190850796 CT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196843 2 - 15139346 CT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982059 2 - 7304997 CT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9398554 2 - 11631747 CT i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48019535 2 + 63241923 AC i canFam3.chr13 I 49 C 0 s dasNov3.JH568349 4114549 2 - 5279953 AC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1887005 244 + 4188776 I e micMur3.chrUn_NW_017968520v1 1796702 705 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I e panPan2.chr4 121060531 3391 - 195804263 M a score=4060103.000000 s hg38.chr4_KI270787v1_alt 82766 333 + 111943 TGTGAAGGCACAATTTGAATGGGGTGAAATCAGCCACCCAGATGCAGCAACCTCTTCTTCCCACTCGGACGCCTGGCATATTAAAATGCTCTGAGAATTAGTCTTCCATTATGACCCT---TAAG----CATAGTTAGAATGTCCCTCTCT-TACTGGAAATAAATGATTCTAAGAACTCAAGCATCTGCCGCTAATAGCCATTGCCTT---CATTTACGGAGGGCAAGTTTTGC----GCTA-GTACAGATCCCTTTACATAAGCCATT-TCTTTGGAATGAGATTC-CACACCCTTGTGTtcttgccctgg-------cttgactcttcagcctc---acttttctccagctctatgtc---- s panTro5.chr4 119649995 334 - 194502333 TGTGA-GGCACAATTTGAATGGGGTGAAATCAGCCACCCAGATGCAGCAACCTCTTCTTCTCACTCAGACGCCTGGCATATTAAAATGCTCTGAGAATTAGCCTTCCATTATGACCCT---TAAG----CATAGTTAGAATGTCCCTCTCT-TACTGGAAGTAAATGATTCTAAGAACTCAAGCATCTGCCGCTA-TAGCCATTACCTTATTCATTTACTGAGGGCAA-TTTTGC----GCTA-GTACAGATCCCTTTACATAAGCCATTCTCTTTGGAATGAAATTC-CACACCCTTGTGTtcttgccctgg-------cttgactcttcagcctc---acttttctccagctctatgtc---- i panTro5.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4492922 333 - 17550833 TGTGAAGGCACAATTTGAATGGGGTGAAATCAGCCACCCAGATGCAGCAACCTCTTCTTCTCACTCAGACGCCTGGCATATTAAAATGCTCTGAGAATTAGTCTTCCATTATGACCCT---TAAG----CATAGTTAGAATGTCCCTCTCT-TACTGGAAATAAATGATTCTAAGAACTCAAGCATCTGCCGCTAATAGCCATTGCCTT---CATTTACTGAGGGCAAGTTTTGC----GCTA-GTACAGATCCCTTTACATAAGCCATT-TCTTTGGAATGAGATTC-CACACCCTTGTGTtcttgccctgg-------cttgactcttcagcctc---acttttctccagctgtatgtc---- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362080 337 - 118206036 TGTGAAGGCACAATTTGAATGGGGTAAAATCAGTCACCCAGATGCAGCAACCTTTTCTTCCCACTCAGACGCCTGGCATATTAAAATGCTCTGAGAATTAGTCTTACATTATGACCCT---TAAG----CATAGTTAGAACATCCCTCTCT-TACTGGAAATAAATAATTCTGAGAACTCAAGCATCTGCTGCTAATAGCCATGGCCTT---CATTTACTGAGGGCAAGCTTTGCGCTAGCTA-GCACAGATCCATTTACATAAGCCAGT-TCTTTAGAATGAGATTC-CACACCCTTGTGTTCTTGCCCTGG-------CTTGActcttcaccctc---acttttctccagctctatgtc---- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574469 332 - 190429646 TGTGAAGGCACAATTTGAATGGGGTGAAATCAGCCACCCAGATGCAGCAACCTCTTCTTCCCACTCAGATGCCTGGCGTATTAAAATGCTCTGAGAATTAGTCTTCCATTATGACCCC---TAAG----CATAGTTAGAATGTCCCTCTCC-TACCGGAAATAAATGATTCTAAGAACTCAAGCATCTGCTGCTAATAGCCATTGCCTT---CATTTACTGAGGGCAAGCTTTGC----GCTA-GCACGGAT-CCTTTACATAAGCCATT-TCTTTGGAATGAGATTC-CACACCCTTGTGTTCTTGCCCTGG-------CTTGACTCTTCAGCCTC---ACTTTTCTCCAGCTCTATGTC---- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743653 332 - 189454096 TGTGAAGGCACAATTTGAATGGGGTGAAATCAGCCACCCAGATGCAGCAACCTCTTCTTCCCACTCAGATGCCTGGCATATTAAAATGCTCTGAGAATTAGTCTTCCATTATGACCCC---TAAG----CATAGTTAGAATGTCCCTCTCC-TACCGGAAATAAATGATTCTAAGAACTCAAGCATCTGCTGCTAATAGCCATTGCCTT---CATTTACTGAGGGCAAGCTTTGC----GCTA-GCACGGAT-CCTTTACATAAGCCATT-TCTTTGGAATGAGATTC-CACACCCTTGTGTTCTTGCCCTGG-------CTTGACTCTTCAGCCTC---ACTTTTCTCCAGCTCTATGTC---- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310112 332 + 26754465 TGTGAAGGCACAATTTGAATGGGGTGAAATCAGCCACCCAGATGCAGCAACCTCTTCTTCCCACTCAGATGCCTGGCATATTAAAATGCTCTGAGAATTAGTCTTCCATTATGACCCC---TAAG----CATAGTTAGAATGTCCCTCTCC-TACCGGAAATAAATGATTCTAAGAACTCAAGCATCTGCTGCTAATAGCCATTGCCTT---CGTTTACTGAGGGCAAGCTTTGC----ACTA-GCACGGAT-CCTTTACATAAGCCATT-TCTTTGGAATGAGATTC-CACATCCTTGTGTTCTTGCCCTGG-------CTTGACTCTTCAGCCTC---ACTTTTCTCCAGCTCTATGTC---- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4211694 332 - 5137665 TGTGAAGGCACAATTTGAATGGGGTGAAATCAGCCACCCAGATGCAGCAACCTCTTCTTCCCACTCAGATGCCTGGCATATTAAAATGCTCTGAGAAGTAGTCTTCCATTATGACCCC---TAAG----CATAGTTAGAATGTCCCTCTCC-TACCGGAAATAAATGATTCTAAGAACTTAAGCATCTGCTGCTAATAGCCATTGCCTT---CATTTACTGAGGGCAAGCTTTGC----GCTA-GCACGGAT-CCTTTACATAAGCCATT-TCTTTGGAATGAGATTC-CACACCCTTGTGTtcttgccctgg-------cttgactcttcagcctc---acttttctccagctctatgtc---- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921606 333 - 135778131 TGTGAAGGCACAATTTGAATGGGGTGAAATCAGCCACCCAGATGCAGCAACCTCTTCTTCCCACTCAGATGCCTGGCATATTAAAATGCTCTGAGAATTAGTCTTCCATTATGACCCC---TAAG----CATAGTTAGAATGTTCCTCTCC-TACTGGAAATAAATGATTCTAAGAACTCAAGCATCTGCTGCTAATAGCCATTGCCTT---CATTTACTGAGGACAAGCTTTGC----GCTA-GCACAGATCCCTTTACATAAGCCATT-TCTTTGGAATGAGATTC-CACACCCTTGTGTTCTTGCCCTGG-------CTTGACTCTCCAGCCTC---ACTTTTCTCCAGCTCTATGTC---- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2033389 332 + 2427316 TGTGAAGGCACAATTTGAATGGGGTGAAATCAGCCACCCAGATGCAGCAACCTCTTCTTCCCACTCAGATGCCTGGCATATTAAAATGCTCTGAGAATTAGTCTTCCATTATGACCCC---TAAG----CATAGTTAGAATGTCCCTCTCC-TACCGGAAAGAAATGATTCTAAGAACTCAAGCATCTGCTGCTAATAGCCATTGGCTT---CATTTACTGAGGGCAAGCTTTGC----GCTA-GCACGGAT-CCTTTACATAAGCCATT-TCTTTGGAATGAGATTC-CACACCCTTGTGTtcttgccctgg-------cttgattcttcagcctc---acttttctccagctctatgtc---- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1328964 333 + 1448899 TGTGAAGGCACAATTTGAATGGGGTGAAATCAGCCACCCAGATGCAGCAACCTCTTCTTCCCACTCAGACGCCTGGCATATTAAAATGCTCTGAGAATTAGTCTTCCATTATGACCCC---TAAG----CATAGTTAGAATGTCCCTCTCT-TACTGGAAATAAATGATTCTAAGAACTCAAGCATCTGCTGCTAATAGCCATTGCCTT---CATTTACTGAGGGCAAGCTTTGC----GCTA-GCACGGATCCCTTTACTTAAGCCATT-TCTTTGGAATGAGATTC-CACACCCTTGTGTtcttgccctgg-------cttgactcttcagcctc---acttttctccagctctatgtc---- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53036761 330 - 190850796 TGTGAAGGCACAGTTTGAACAGGGTGAAATCAGCCACCCAGATGCAGCAACCTCTTCTTCCCACTCAGATGCCAGGCATATTAAAATGCTCTGAGAATTAGTCTTCCATTATGACCCT---TAAG----CATAGTTAGAATGTCCCTCTCT-TACTGGAAATAAATTATTCTAAGAACTCAAGCATCTGCTGCTAATAGCCATTGCCTT---CATTTATCGAGGGCGAGCTTTGC----ACCA-GCACAGATCTCTTTACATAAGCCATT-TCTTTGGAATGAGATTC-CACACCCTTGTGTTCTTGCCTGGG-------CTTGACTCT---GACTC---ACTTTTCTCCAGCTCTTTGTC---- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8196845 330 - 15139346 TGTGAAGACACAGTTTGAACAGGGTGAAATCAGCCACCCAGCTGCAGCAACCTCTTCTTCCCACGCAGATGCCCAGCACATTAAAATGCTCTGAGAATTAGTCTTCCATTATGACCCT---TAAG----CATAGTTAGAATGTCCCTCTCT-TCCTGGAAATAAATGATTCTAAGAACTCAAGCATCTGCAGCTAATAGCCATTGCCTT---AATTTACCGAGGGCAAGCTTTGC----ACCC-GCACAGATCTCTTTGCATAAGCCATT-TCTTTGGAATGAGATTC-CACACCCTTGTGTTCTTGCCCTGG-------CTTGACTCT---GCCTC---ACTTTTCTCCAGCTCTATGTC---- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982061 337 - 7304997 TGTGAAGGCACAGTTTGAACAGGGTGAAATCAGCCACCGAGATGCAGCAACCTCTTCTTCCCACTCAGATGCCCGGCATATTAAAATCCTCTGAGAATCAGTCTTCCATTACGACCCT---TAAG----CATATTTAGAGCGTCCGTCTCT-TACTGGAAATAAATGATTCTAAGAACTCAAGCATCTGCAGCTAATAGCCATTGCCTT---CATTTACCGAGGGCGAGCTTTGC----ACCA-GCACAGATCTCTTTACATAAGCCATT-TCTTTGGAATGAGATTC-CACACCCTTGTGTTCCTGCCCTGGCTTGACTCTTGACTCT---GCCTC---ACTTTTCTCCAGCTCTATGTC---- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9398556 330 - 11631747 TGTGAAGGCACAGTTTGAACAGCATGAAATCAGCCACCCAGATGCAGCAACCTCTTCTTCCCACTCAGATGCCCAGCATATTAAAATGCTCTGAGAATTAGTCTTCCATTATGACCCT---TAAG----CATAGTTAGAATGTCCCTCTCT-TACTGGAAATAAATGATTCTAAGAACTCAAGCATCTGCTGCTAACAGCCATTGCCTT---CATTTACCGAGGGCGAGCTTTGC----ACCA-GCACAGATCTCTTTACATATGCCATT-TCTTTGGAATGAGATTC-CACACCCTTGTGTTCTTGCCCTGG-------CTTGACTCT---GCCTC---ACTTTTCTCCAGCTCTATGTC---- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1797407 324 + 3286835 TGTGAAGGCACAATTTGAATGGGGTGAAACCAGC----------CAGCAAGCTCTTCTTCCTACTCAGATGGCTGGCAGATT-AAATGTTCTGAGAATTAATCTTCCATTGTCACCCT---TAAGCAGACATA-TTAGAATGTCCCTTCCT-TCCTGGGAGTAAAGGATTCTAAGAACTCAAGCATCTACTGCTAACAGCTATTgctat---cattttctgagggcctgctgtgt----gcca-gcactgATCCCTGTACATAAGCCATT-TCTTCAGAATGAGATTC-CAGAACCTTGTG-TCTGGCCCTGG-------CTTGACTCTCCTACCTC---ACTCTTCTCCAGCTCTTTGTC---- i micMur3.chrUn_NW_017968520v1 I 705 I 373 s proCoq1.NW_012140747v1 1887249 335 + 4188776 TGTGAAGGCACAATTTGAATGGGGGGAAACCAGCCACCCAGATGCAGCAACCTCTTCTTCCTACTCAGATTGCTGGTATATT-AAATGTTCTGAGAATTAGTCTTCTATTGTGACCCT---TAAGCAGACAGAGTTAAAATGTCCCTCCCT-TCCTGGGAGTCACGGATTCTAAGAATTCAAGCATCTACTGCTAACAGCCACCGCTAT---CATTTTCTGACGGCCTGCTATGT----GCCA-GCACTGATCCCTGTACATAAGCTATT-TCTTTAGAATGAGATTT-CAGAACCTTGTG-TCTGGCCCTGG-------CTTGACTCTCCTATCTC---ACTCTTCTCCAGCTCTTTGTC---- i proCoq1.NW_012140747v1 I 244 I 1 s canFam3.chr13 48019537 337 + 63241923 TCTGAAGGCACAATTTGAATGGAGCAAAACCAGCAACCCAGACATGGCAACCACTTCTTCCCACTCACATGGCTGGAATATTGAAATGTTCTAAGAATTAATCTTCCATTAAGACCCTGAGTGAA----CATAGTTAGAATGACCTTTGCCACTCTGGAAGTAAATG-TTCTAAGAACTCAAGCATCTACTACTAATAGCCGTCATTAT---CATTTAGTGAAGGTGTCTTATGT----GCTT-GCGCTGATCCCTTTACACAATTCATT-TCTTTAGAAGGTAATTCAAAGACGCTTGTATtctggcctccg-------cttacctctcctgcctt---actcctcttgggctccatgtt---- i canFam3.chr13 C 0 I 11 s dasNov3.JH568349 4114551 325 - 5279953 TCTGAAAGCATCGTATGAACGGGGTTAAACCAGCAACACAGACACGGCAACCTCTTCTTCC-------------ATCAGACTGAAAAGTTCTGAGAAGTAATCTTCCTTTATTACCCT---TGATTAGACATAGTTAGAATGTCCCTCCCA-CTCCCAGAGAAAATGGATCTAAGGACTCAAGTATCTACTACTCATAGCCATTATtac---catttattgagggcctgctctgt----atcaggcacaaagcactttacatCAGCCACT-T-TGTAGAGGGTCATTC-AAGGCCCTCAAGATTctg-------------cttaagtctcctgccttagaatcctactccagctccaggctccac i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76433071 2972 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I e panPan2.chr4 121060531 3391 - 195804263 M a score=411851.000000 s hg38.chr4_KI270787v1_alt 83099 58 + 111943 -------cagttgct-gcatttccctagaatgtaccacaacacaatcttttgcccctccagctcta s panTro5.chr4 119650329 54 - 194502333 -------caattgctcgcatttccctagaatgtaccacaa-----tcttttgcccctccagctcta i panTro5.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4493255 53 - 17550833 -------caattgct-gcatttccctagaatgtaccacaa-----tcttttgcccctccagctcta i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362417 53 - 118206036 -------caattgct-gcatttccctagaatgtaccacat-----tcttttgcctctccagctcta i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574801 52 - 190429646 -------CAATTGCT-GCATTTCCCTAGAATGTCCCACAT-----TCTTTTGTCCCTCCAGCTCT- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110743985 52 - 189454096 -------CAATTGCT-GCATTTCCCTAGAATGTCCCACAT-----TCTTTTGTCCCTCCAGCTCT- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310444 52 + 26754465 -------CAATTGCT-GCATTTCCCTAGAATGTCCCACAT-----TCTTTTGTCCCTCCAGCTCT- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4212026 52 - 5137665 -------caattgct-gcatttccctagaatgtcccacat-----tcttttgtccctccagctct- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921939 52 - 135778131 -------CAATTGCT-GCATTTCCCTAGAATGTCCCACAT-----TCTTTTGTCCCTCCAGCTCT- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2033721 52 + 2427316 -------caattgct-gcatttccctagaatgtcccacat-----tcttttgtccctccagctct- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1329297 52 + 1448899 -------caattgct-gcatttccctagaatgtcccacat-----tcttttgtccctccagctct- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53037091 39 - 190850796 -------CAATTGCT-GCATTTCCCCAAAATG------------------TGCCCCTCCAGCTGT- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8197175 39 - 15139346 -------CAATTGCT-GCATTTCCCTAGAATG------------------TGCCCCTCCAGCTCT- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982398 39 - 7304997 -------CAATTGCT-GCATTTCCCTAGAATG------------------TGCCCCTCCAGCTCT- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9398886 39 - 11631747 -------CAATTGCT-GCATTTCCCCAGAATG------------------TGCCCCTCCACCTGT- i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1887585 52 + 4188776 -------GACTCACC-GCATTTCCCCAGAATGTACCACAT-----TCTTTCCCCCAGGTAGCTCT- i proCoq1.NW_012140747v1 I 1 I 1 s canFam3.chr13 48019885 53 + 63241923 -------gaattatttgcatttccccagaaggtatcacat-----tcttttacccttgcagatct- i canFam3.chr13 I 11 C 0 s dasNov3.JH568349 4114876 58 - 5279953 cagtacagaatcatttgcattttcccagaaagtatcacat----atccttt---ctcacagctct- i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I e panPan2.chr4 121060531 3391 - 195804263 M a score=2002711.000000 s hg38.chr4_KI270787v1_alt 83157 213 + 111943 tacacatagacacacacacacacacacacacaca-----cacacacacacacaca-cac---ggcttttcttg---tat--atgtggttccctcctcctttcatttagccaactctggtgcatccggctgacttcag-ttcaagacttcagcttcctttgataaacatc-ctgatcaccACAGGAACcactgttcctcagacctggctccacgttagaatcacctgggg s panTro5.chr4 119650383 219 - 194502333 tacacacagacacacacacacacacacagacacatcacacacacacacacacacatcac---ggcttttcttg---tat--atgtggttccctcctactttcatttagccaactctggtgcatccggctgacttcag-ttcaagacttcagcttcctttgataaacatc-ctgatccccACCGGAATcagtgttcctcagacctggctccacgttagaatcacctgggg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121063928 213 - 195804263 Tacacacacacacacacacacacacacacacaca-----cacacacacacacaca-cac---GGcttttcttg---tat--atgtggttccctcctcctttcatttagccaactctggtgcatccggctgacttcaa-ttcaagacttcagcttcctttgataaacatc-ctgatccccACCGGAATcagtgttcctcagacctggctccacgttagaatcacctgggg i panPan2.chr4 M 3391 C 0 s gorGor5.CYUI01014963v1 4493308 199 - 17550833 --------------cacacacacacacacacaca-----cacacacacacacaca-cac---ggcttttcttg---tat--atgtggttccctcctcctttcatttagccaactctggtgcatccggctgacttcag-ttcaagacttcagcttcctttgataaacatc-ctgatcaccACCGGAACcagtgttcctcagacctggctccacgttagaatcacctgtgg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362470 169 - 118206036 -------------------------------------------cacacacacaca-cac---agcttttcttg---tat--atgtggttccctcctccttacatttagccaactctggtgcatccagccggcttcag-ttcaagacttcagcttcctttgataag-------GATCACCGCCAGAACcggtgttccttagacctggctccacgttagaatcacccaggg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111574853 197 - 190429646 -----------------acacacacacacacaca-----cacacacacacacaca-caG---AGCTTTTCCTG---TAT--ATGTGGTTCCTTCCTCCTCACATTTAGCCAACTCTGGTGCAACCGGCCAAGTTCAG-TCCAAGACTTCAGCTTCCTTTGGTCAACATCCCTGATCAGTGCTGGAACcagtgttcctcagacctggctccgcgttagaatcacctgggg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110744037 197 - 189454096 -----------------acacacacacacacaca-----cacacacacacacaca-caG---AGCTTTTCCTG---TAT--ATGTGGTTCCTTCCTCCTCACATTTAGCCAACTCTGGTGCAACCGGCCAAGTTCAG-TCCAAGACTTCAGCTTCCTTTGGTCAACATCCCTGATCAGTGCTGGAACcagtgttcctcagacctggctccgcgttagaatcacctgggg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310496 205 + 26754465 ---------acacacacacacacacacacacaca-----cacacacacacacaca-caG---AGCTTTTCCTG---TAT--ATGTGGTTCCTTCCTCCTCACATTTAGCCAACTCTGGTGCAACCGGCCAAGTTCAG-TCCAAGACTTCAGCTTCCTTTGGTCAACATCCCTGATCAGTGCCGGAACcagtgttcctcagacctggctccgcgttagaatcacctgggg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4212078 193 - 5137665 ---------------------acacacacacaca-----cacacacacacacaca-cag---agcttttcctg---tat--atgtggttccttcctcctcacatttagccaactctggtgcaaccggccaagttcag-ttcaagacttcagcttcctttggtcaacatctctgatcAGTGCCGGAACcagtgttcctcagacctggctccgtgttagaatcacctgggg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122921991 198 - 135778131 ---------------acacacacacacacacaca-----cacacacacacacaca-caG---AGCTTTTCCTG---TAT--ATGTGGTTCCTTCCTCCTCACA-TTAGCCAACTCTGGTGCAACCGGCCAAGTTCAG-TTCAAGACTTCAGCTTCCTTTGATCAACATCCCTGATCAGTGCCAGAACcagtgttcctcagacctggctccgcgttagaatcacctgggg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2033773 205 + 2427316 ---------acacacacacacacacacacacaca-----cacacacacacacaca-cag---agcttttcctg---tat--atgtggttccttcctcctcacatttagccaactctggtgcaaccggccaagttcag-ttcaagacttcagcttcctttggtcaacatccctgatcAGTGCCGGAACcagtgttcctcagacctggctccgcgttagaatcacctgggg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1329349 201 + 1448899 -------------acacacacacacacacacaca-----cacacacacacacaca-tag---agcttttcctg---tat--atgtggttccttcctccttacatttagctaactctggtgcaaccggccaagttcag-ttcaagacttcagcttcctttgatcaacatccctgatcAGTGCCGGAACcagtgttcctcaggcctggcttcgcgttagaatcacctgggg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53037130 186 - 190850796 -----------acacacacacacacacacacaca-----cac--------------------aAGTTTTCTTG---TAT--ATGTGGTTCCCTCCTCCTTACATTTAGTCAATTCTGGTGCACCCGGCAGGCTTCAG-TTAAAGACTTTAGCTTCTTTTGCTTAACATC-CTGATCACCGTGGGAATcagtgttcctcaaacctggctccacattagaatcacctaggg i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8197214 199 - 15139346 -----------acacacacacacaaacacacaca-----cac------acacaca-cacaAAAACTTTTCTTG---TAT--ATGTGGTTCCCTCCTCCTTAGATTTAGTCAATTCTGGTGCATCCGGCAGGCTTCAG-TTAAAGAGTTTAGCTTCTTTTGATTAACATC-CTGATCACCGCCGGAATcagtgttcctcaaacctagctccacattagaatcacctaggg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982437 205 - 7304997 -----------acacacacacacacacacacaca-----cacacacacacacaca-cacacacacTTTTCTTG---TAT--ATGTGGTTCCCTCCTCCTTGCATGTAGTCAATTCTGGCGCATCCGGCAGGCTTCAG-TTAAAGACTTTAGCTTCTTTTGATTAACATC-CTGATCACCGCCGGAATcagtgttcctcaaacgtagctccacattagaatcacctagcg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9398925 202 - 11631747 -----------acacacacacacacacacacaca-----cacacacacacacaca-cac---aActcttcttg---tat--atgtggttccctcctccttacatttagtcaattcttgcgcatccggcaggcttcag-ttaaagactttagcttctTTTGATTAACACC-CTGATCACCGCCAGAATcagtgttcctcaaacctggctccacattagaatcaccaaggg i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1887638 212 + 4188776 ----cacacacatacactcgtacaaacacacacg-----cagacacacacacaca-cag---acCTTTTCTTG---TTTGCAGGTAGttccctcctctctacatttagccaactctggcccatgcagcaagcttcag-ttcaagacaccagcttcctctgataaacatccctgatcacagcctaaaCcagagtttctcaaacctgggtccacatgagaatcacctgggg i proCoq1.NW_012140747v1 I 1 I 108 s canFam3.chr13 48019938 183 + 63241923 -----------------tcacacacacacacaca------------------aaa-cct---acccttccttgttctat--gtgtggttctttcctctctacatatggccaactctggatcatgctgcagacttcagcctcaagacctcagcttcctctgaaaaattcc-ctgatcccAGCCTGA----GAGTttctcaaacctggctccacattagaatcacctggga i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4114934 133 - 5279953 --------------------------------------------tcacacacccc-tgc---tcttccccttt---tgc--atgcagttccttcctctctacatttggctaact------------------------TTC-------CAGCTTCCTCTGATAAACAGCCCCCATCCCAGCCTAAATcagtggtttttagccctggctccatgtt----tc-------- i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=1395645.000000 s hg38.chr4_KI270787v1_alt 83370 166 + 111943 cagctgaaaaattactgac-ccct-ggctacacttccagaaat--ttatttaactggtc-----tgtgac----cagggcattgTTCGTTTGTTTACAAAACAA-----------------------AAC-AAAAATGAAAAACGTCTCTATGAGATCTTATTCAACAATGGAGGCAGAGAACCACTGGCCTAAAATGGGGTA---- s panTro5.chr4 119650602 166 - 194502333 cagctgaaaaattactgac-ccct-ggctacacttccagaaat--ttatttaactggtc-----tgtgac----cagggcattgTTTGTTTGTTTAAAAAACAA-----------------------AAC-AAAAACAAAAACCGTCTCTATGGGATCTTATTCAACAGTGGAGGCAGAGAACCACTGGCCTAAACTGGGTTA---- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064141 166 - 195804263 cagctgaaaaattactgac-ccct-ggctacacttccagaaat--ttatttaactggtc-----tgtgac----cagggcattgTTCGTTTGTTTAAAAAACAA-----------------------AAC-AAAAACAAAAACCGTCTCTATGGGATCTTATTCAACAGTGGAGGCAGAGAACCACTGGCCTAAACTGGGTTA---- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4493507 166 - 17550833 cagcttaaaaattactgac-ccct-ggctacacttccagaaat--ttatttaactggtc-----tgtgac----cagggcattgTTCGTTTGTTTAAAAAACAA-----------------------AAC-AAAAACAAAAACGGTCTCTATGGGATCTTATTCAACAGTGGAGGCAGAGAACCACTGGCCTAAACTGGGTTA---- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362639 161 - 118206036 cagcttaaaaacgactgat-ccct-ggctacacttccagaaat--tgatttaactggtc-----tgTGAC----AAGAGCACTGTTCGTTTCTTTAA-----AA-----------------------AAC-AAAAACAAAAAACGTCTCTATGGGATCTTATTCAACAGTGGAGGCAGAGAACCACTGGCCTAAACTGGGTTA---- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111575050 142 - 190429646 cag-----------------cact-ggctacacttccagaaat--tgatttaactg---------gtgac----cagggcattgTTCGTTTGTTTAAAAAAACA-----------------------AACAA-----AAAAAAAGTCTCTATGGGATCTTATTCAACAGTGGAGGCAGAGAACCACTGGCCTAAACTGGGTTA---- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110744234 141 - 189454096 cag-----------------cact-ggctacacttccagaaat--tgatttaactg---------gtgac----cagggcattgttcgtttgtttaaaaaaaca-----------------------aac-a-----aaaaaaagtctctatgggatcttattcaacagtggaggcagagaaccactgGCCTAAACTGGGTTA---- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310701 145 + 26754465 cag-----------------cact-ggctacatttccagaaat--tgatttaactggtc-----tgTGAC----CAGGGCATTGTTCGTTTGTTTAAAAAAACA-----------------------AAC-A-----AAAAAAAGTCTCTATGGGATCTTATTCAACAGTGGAGGCAGAGAACCACTGGCCTAAACTGGGTTA---- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4212271 149 - 5137665 cag-----------------cact-ggctacacttccagaaat--ttatttaactggtc-----tgtgac----cagggcattgTTCGTTTGTTTAAaacaaca---------------------acaac-a---acaaaaaACGTCTCTATGGGATCTTATTCAACAGTGGAGGCAGAGAACCACTGGCCTAAACTGGGTTA---- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122922189 148 - 135778131 cag-----------------cact-ggctacacttccagaaat--tgatttaactggtc-----tgtgac----cagggcattgTTCGTTTGTTTAAAATAACA---------------------ACAAC-A---ACAAAAAAAGTCTCTATGGGATCTTATTCAACAGTGGAGGCAGAGAACCAC-GGCCTAAACTGGGTTA---- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2033978 149 + 2427316 cag-----------------cact-ggctacacttccagaaat--tgatttaactggtc-----tgtgac----cagggcattgTTCGTTTGTTTAAAAAAACA---------------------ACAAC-A---ACAAAAAACGTCTCTATGGGATCTTATTCAACAGTGGAGGCAGAGAACCACTGGCCTAAACTGGGTTA---- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1329550 148 + 1448899 cag-----------------cact-ggctacacttccagaaat--tgatttaactggtc-----tgtgac----cagggcattgTTCGTTTGTTTaaaaaaaca-----------------------aac-a--aacaaaaaacGTCTCTGTGGGATCTTATTCAACAGTGGAGGCAGCGAACCACTGGCCTAAACTGGATTA---- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53037316 157 - 190850796 cagcttaaaaatttctgat-ccct-ggctacacttctagaatt--tgatttaataggtc-----tgtgac----cagggcattgTTTGTTT---------AAAA-----------------------AAC-AAAAACAAAAAACTTCTCTATGGGATCTTATTCAACAATGGAGGCAGAGAACCACTGGCCTAAACTGGGTTA---- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8197413 157 - 15139346 cagcttaaaaattgctgat-cccc-ggctacacttccggaact--tgatttaactggtc-----tgtgac----cagggcattgTTTGTTT---------AAAA-----------------------AAC-AAAAATGAAAAACTTCTCTATGGGACCTTATTCAACAATGGAGGCAGAGAAGCACTGGCCTAAACTGGGTTA---- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982642 157 - 7304997 cagcttaaaaatttctgat-ctcc-ggctacacttccagaact--tgatttaactggtc-----tgtgac----cagggcattgCTTGTTT---------AAAA-----------------------AAC-AAAAACGAAAAACTTCTCTATAGGATCTTATTCAACAACGGAGGCAGAGAACCACTGGCCTAAATTGGGTTA---- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399127 157 - 11631747 cagcttaaaaatttctgat-cccc-ggctacacttccagaact--tgattcaactggtc-----tgtgac----caggacattgTTTGTTT---------AAAA-----------------------AAC-AAAAACGAAAATCTTCTCTATGGGATCTTATTCAATAATGGAGGCAGAGAACCACTGGCCTAAACCGGGTTA---- i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48020121 192 + 63241923 -gacttaagaattactggtcccca-agataaacccctagcaattctgatttaactagtctatggtgtgac----cagagtgttggtagttt----aaaacaacaacaacaacaacaacaacaacaacaac-aacaacaacaaaactctccaggggtttctaatgaatagtcaaagcagagaaccattgACCTAAACTGAGTTA---- i canFam3.chr13 C 0 I 1 s dasNov3.JH568349 4115067 147 - 5279953 -------aaaattactgat-ccctaggctgcagctccagaaattatgatttaactggtc-----tatggtatgacagagcattgatatttttctc--------------------------------aac-c--------------ctccagggaattctaatttacagccaaggctgagaaccactgGCTTAAACTGAGTTATTTA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1887850 108 + 4188776 I e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I e mm10.chr5 76433071 2972 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=627715.000000 s hg38.chr4_KI270787v1_alt 83536 53 + 111943 TTTTCCCCC-TCACCACCTGATGCCTCTCATGCTTCTCCCTATCTTAGCCCACA s panTro5.chr4 119650768 53 - 194502333 TTTTCCCCC-TCACCACCTGATGTCTCTCATGCTTCTCCCTATCTTAGCCCACA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064307 53 - 195804263 TTTTCCCCC-TCACCACCTGATGTCTCTCATGCTTCTCCCTATCTTAGCCCACA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4493673 53 - 17550833 TTTTCCCCC-TCACCACGTGATGCCTCTCAAGCTTCTCCCTATCTTAGCCCACG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362800 54 - 118206036 TTTTCCCCCGTCACCACCTGATGCCTCTCATGCTTCCCCCTATCCTAGCCCGCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111575192 53 - 190429646 TTTTCTCCC-TCACCACCTGATACCTCTCATGCTTCTCCCTATCTTAGCCCGCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110744375 53 - 189454096 TTTTCTCCC-TCACCACCTGATACCTCTCATGCTTCTCCCTATCTTAGCCCGCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310846 53 + 26754465 TTTTCTCCC-TCACCACCTGATACCTCTCATGCTTCTCCCTATCTTAGCCTGCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4212420 53 - 5137665 TTTTCCCCC-TCACCACCTGATACCTCTCATGCTTCTCCCTATCTTAGCCCGCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122922337 53 - 135778131 TTTTCCCCC-TCACCACCTGATACCTCTCATGCTTCTCCCTATCTTAGCCCGCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2034127 53 + 2427316 TTTTCCCCC-TCACCACCTGATACCTCTCATGCTTCTCCCTATCTTAGCCCGCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1329698 53 + 1448899 TTTTCCCCC-TCACCACCTGATACCTCTCATGCTTCTCCCTATCTTAACCCGCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53037473 53 - 190850796 TCTTCCCCC-TCACCACCTGAGGCCTCTCATGCTTCTCCCTATCTTGGCCTGCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8197570 53 - 15139346 TCTTCCCAC-TCACCACCTGATGCCTCTCTTGCTTCTCCCTACCTTAGCCTGCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982799 53 - 7304997 TCTTCCCCC-TCACCACCTGATGCCTCTCATGCTTCTCCCCACCTTAGCCTGCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399284 52 - 11631747 TCTTCCCCC-TCACCACCTGATGCCTCTCATGCTTCT-CCTATCTTAGCCTGCA i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76436043 52 + 151834684 ttctttctt-tcA-CACCAGAGGCCCCTCACACGTCTCCCTGTCTGGATCTGCA i mm10.chr5 I 2972 C 0 s canFam3.chr13 48020314 53 + 63241923 TTTTCCCTT-TAAGCACCTGAGGcctctcaagctcctcactgtcttagccagca i canFam3.chr13 I 1 C 0 s dasNov3.JH568349 4115214 41 - 5279953 TTTTCCCTT-TGGGTTCCTGAGACCCCTCATGCTTCCCACTA------------ i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1887850 108 + 4188776 I e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I e otoGar3.GL873602 8629523 5660 + 8790067 I a score=468419.000000 s hg38.chr4_KI270787v1_alt 83589 38 + 111943 TCTTATTTTATTAAAATCACTTGTTAGTTTAGGCCTCC s panTro5.chr4 119650821 38 - 194502333 TCTTATTTTATTAAAATCACTTGTTAGTTTAGGCCTCC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064360 38 - 195804263 TCTTATTTTATTAAAATCACTTGTTAGTTTAGGCCTCC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4493726 38 - 17550833 TCTTATTTTATTAAAATCACTTGTTAGTTTAGGCCTCC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362854 37 - 118206036 TCTTATTTTATC-AAACCACTTGTTACTTTAGCCCTCC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111575245 38 - 190429646 TCTTATTTTATTAAAATCACTTGTTAGTTTAGGCCTCC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110744428 38 - 189454096 TCTTATTTTATTAAAATCACTTGTTAGTTTAGGCCTCC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310899 38 + 26754465 TCTTATTTTATTAAAATCACTTGTTAGTTTAGGCCTCC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4212473 38 - 5137665 TCTTATTTTATTAAAATCACTTGTTAGTTTAGGCCTCC i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 2034180 38 + 2427316 TCTTATTTTATTAAAATCACTTGTTAGTTCAGGCCTCC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1329751 38 + 1448899 TCTTATTTTATTAAAATCACTTGTTAGTTTAGGCCTCC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53037526 38 - 190850796 TCTTATTTCATTATAATCACTTGTTAGTTTAGGCCTCC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8197623 38 - 15139346 TCTTATTTCATTATAATCACTTGTTAGTTTAGGCCTCC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982852 38 - 7304997 TCTTATTTCATTATAATCACTTGTTAGTTTAGGCCTCC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399336 38 - 11631747 TCTTATTTCATTATAATCACTTGTTAGTTTAGGCCTCC i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1887958 38 + 4188776 TCTTATTTTATTATAATCACTTGATAGCTTGGCTCTCC i proCoq1.NW_012140747v1 I 108 C 0 s mm10.chr5 76436095 33 + 151834684 TCTTCTGTT-----AGTTACTGGATAGTTTGTGCCTTC i mm10.chr5 C 0 I 309 s canFam3.chr13 48020367 38 + 63241923 tcttattttgttgtaatcagttgttagtttggctttcc i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4115255 38 - 5279953 TCTTATTTTATTATAATCACAGGTTAACTTGGCCCTCC i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I e otoGar3.GL873602 8629523 5660 + 8790067 I e chlSab2.chr7 122922390 0 - 135778131 C a score=454879.000000 s hg38.chr4_KI270787v1_alt 83627 46 + 111943 -CCTTTGAA-----------GCTCAAgtttaccatcatattcacagggcctagaacag s panTro5.chr4 119650859 46 - 194502333 -CCTTTGAA-----------GCTCAAgtttaccatcatattcacagggcctagaacag i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064398 46 - 195804263 -CCTTTGAA-----------GCTCAAgtttaccatcatattcacagggcctagaacag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4493764 46 - 17550833 -CCTTTGAA-----------GCTCAAgtttaccatcatattcacagggcctagaacag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362891 46 - 118206036 -CCTTTGAA-----------GCTCAAgtttaccatcatattcacagggcctagaacag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111575283 45 - 190429646 -CCTTTGAA------------CTCAAgtttaccgtcatattcatagggcctagaacag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110744466 45 - 189454096 -CCTTTGAA------------CTCAAgtttaccgtcatattcatagggcctagaacag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310937 45 + 26754465 -CCTTTGAA------------CTCAAgtttaccgtcatattcatagggcctagaacag i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4212511 45 - 5137665 -CCTTTGAA------------CTCAAgtttaccatcatattcatagggcctagaacag i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 2034218 45 + 2427316 -CCTTTGAA------------CTCAAgcttaccgtcatattcatagggcctagaacag i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1329789 45 + 1448899 -CCTTTGAA------------CTCAAgtttaccatcatattcatagggcctagaacag i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53037564 46 - 190850796 -CCTTTGAG-----------GCTCAAgtttactatgatgttcacagggccaggaacag i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8197661 46 - 15139346 -CCTTTGAG-----------GCTCAAgtttaccatgatgttcacagggccaggaacag i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982890 46 - 7304997 -CCTTTGAG-----------GCTCAAgtttaccatgatgttcacagggccaggaactg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399374 46 - 11631747 -CCTTTGAG-----------GCTTAAgtttaccatgatgttcacagggccaggaacag i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1887996 46 + 4188776 -CCTTTGAA-----------GCTCAAgtttaccacagtatccataaggcctagaacag i proCoq1.NW_012140747v1 C 0 I 106 s canFam3.chr13 48020405 57 + 63241923 -gttttgaacacgagggcaaggtcaagttcaccactgtatccataaaacctagaacag i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4115293 36 - 5279953 CCCTttgac------------tgcagg----------tatctccagtgcctggaccag i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I e mm10.chr5 76436128 309 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I e chlSab2.chr7 122922390 0 - 135778131 C a score=255767.000000 s hg38.chr4_KI270787v1_alt 83673 26 + 111943 cacccagcacactgtaagggctc---aaC s panTro5.chr4 119650905 26 - 194502333 cacccagcgcattgtaagggctg---aaC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064444 26 - 195804263 cacccagcgcattgtaagggctg---aaC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4493810 26 - 17550833 cacccagcacattgtaagggctc---aaC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362937 26 - 118206036 cgcccagcacaccgtaagggctc---aaC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111575328 26 - 190429646 cgcccagcacagtgtaagggctc---aaC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110744511 26 - 189454096 cgcccagcacagtgtaagggctc---aaC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13310982 26 + 26754465 cgcccagcacagtgtaagggctc---aaC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4212556 26 - 5137665 cgcccagcacagtgtaagggctc---aaC i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 2034263 26 + 2427316 cgcccagcacagtgtaagggctc---aaC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1329834 26 + 1448899 cgcccagcacagtgtaaggcctc---aaC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53037610 26 - 190850796 cgcccaacacattgtaagggctc---aaC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8197707 26 - 15139346 tgcccaacacattgtaagggctc---aaC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982936 26 - 7304997 cgcccaacacattgtaagggctc---aac i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399420 26 - 11631747 cgctcaacacattgtaagggctc---aaC i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48020462 29 + 63241923 tgcctggcacagggtaagggctcaataac i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4115329 26 - 5279953 agtctggcacatagtaatggctc---aat i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1888042 106 + 4188776 I e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I e mm10.chr5 76436128 309 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I e chlSab2.chr7 122922390 0 - 135778131 C a score=57040.000000 s hg38.chr4_KI270787v1_alt 83699 6 + 111943 TACtgt s panTro5.chr4 119650931 6 - 194502333 TACtgt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064470 6 - 195804263 TACtgt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4493836 6 - 17550833 TACtgt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362963 6 - 118206036 TACtgt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111575354 6 - 190429646 TACtgt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110744537 6 - 189454096 TACtgt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13311008 6 + 26754465 TACtgt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4212582 6 - 5137665 TACtgt i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 2034289 6 + 2427316 TACtgt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1329860 6 + 1448899 TACtgt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53037636 6 - 190850796 TACtgt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8197733 6 - 15139346 TACGgt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982962 6 - 7304997 aaCGgt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399446 6 - 11631747 TACtgt i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48020491 6 + 63241923 cactgt i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1888042 106 + 4188776 I e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I e mm10.chr5 76436128 309 + 151834684 I e dasNov3.JH568349 4115355 0 - 5279953 C e otoGar3.GL873602 8629523 5660 + 8790067 I e chlSab2.chr7 122922390 0 - 135778131 C a score=2818632.000000 s hg38.chr4_KI270787v1_alt 83705 314 + 111943 gaacaaatgtgaaccagaaagagccagtcctgcaagatggattccaaatagctaactgggcctaaatttaaaacagagccaagcagccacttgctgactaaaggtcacacacacactttgagctccctgaaaacccacacctctgctcaactttgggactttcagagctcacctgaaccaaccaaacagggctcagctgtatcagccaatcagaactaagagcattttaacccttaatttgcataaatggatctgattgagaacctgagcaggaacttttgctataaaatccaaaccctccctttgttctctgg s panTro5.chr4 119650937 314 - 194502333 gaacaaatgtgaaccagaaagagccagtcctgcaagatggattccaaatagctaactgggcctaaatttaaaacagagccaagcagccacttgctgactaaaggtcacacacacactttgagctccctgaaaacccacacctctgctcaactttgggactttcagagctcacctgaaccaaccaaacagggctcagctgtatcagccaattagaactaagagcattttaacccttaatttgcataaatggatctgattgagaacctgagcaggaacttttgctataaaatccaaaccctccctttgttctctgg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064476 314 - 195804263 gaacaaatgtgaaccagaaagagccagtcctgcaagatggattccaaatagctaactgggcctaaatttaaaacagagccaagcagccacttgctgactaaaggtcacacacacactttgagctccctgaaaacccacacctctgctcaactttgggactttcagagctcacctgaaccaaccaaacagggctcagctgtatcagccaattagaactaagagcattttaacccttaatttgcataaatggatctgattgagaacctgagcaggaacttttgctataaaatccaaaccctccctttgttctctgg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4493842 314 - 17550833 gaacaaatgtgaaccagaaagagccagtccttcaagatggattccaaatagctaactgggcctaagtttaaaacagagccaagcagccacttgctgactaaaggtcacacacgtactttgagctccctgaaaacccacacctctgctcaactttgggactttcagagctcacctgaaccaatcaaccagggctcagctgtatcagccaatcagaactaagagcattttaacccttaatttgcataaatggatctgattgagaacctgagcaggaacttttgctataaaatccaaaccctccctttgttctctgg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69362969 314 - 118206036 gaacaaatgtgaaccagaaagaaccagtccttcaagacggatcccaaatagctaactgggcctaaatttaaaacagagccaagcagccacttgctgactaaaggtcacacacatactttgagttccctgaaaacccacacctgtgctcaactttgggcctttcagagctcacctgaaccaaccaaacaaggctcagctgtatcagccaatcagaactaagagcattttaacccttaatttgcataaatggatctgactgggaacctgagcaggaacttttgctataaaatccgaaccctccctttgttctctgg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111575360 314 - 190429646 gaacaaatgtgaaccagaaagagtcagcccttcaagatggatcccaaatggctcactgggcctgaatttaacacagagccaaggagccacttgttgactaaaggtcacacacatactttgagttccctgaaaacccacacctctgctcaactttgggactttcagagctcacctgaaccaaccaaacagggctcagctgtatcagccaatcagaactaagagcattttaacccttaatttgcatgaatggatctgattgggaacctgagcaggaacttttgctgtaaaatccaaaccctccctttgttctctgg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110744543 314 - 189454096 gaacaaatgtgaaccagaaagagtcagcccttcaagatggatcccaaatggctcactgggcctgaatttaacacagagccaaggagccacttgttgactaaaggtcacacacatactttgagttccctgaaaacccacacctctgctcaactttgggactttcagagctcacctgaaccaaccaaacagggctcagctgtatcagccaatcagaactaagagcattttaacccttaatttgcatgaatggatctgattgggaacctgagcaggaacttttgctgtaaaatccaaaccctccctttgttctctgg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13311014 314 + 26754465 gaacaaatgtgaaccagaaagagtcagcccttcaagatggatcccaaatggctcactgggcctgaatttaacacagagccaagcagccacttgttgactaaaggtcacacacatactttgagttccctgaaaacccacacctctgctcaactttgggactttcagagctcacctgaaccaaccaaacagggctcagctgtatcagccaatcagaactaagagcattttaacccttaatttgcatgaatggatctgattgggaacctgagcaggaacttttgctataaaatccaaaccctccctttgttctctgg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4212588 314 - 5137665 gaacaaatgtgaaccagaaagagtcagcccttcaagatggatcccaaatggctcactgggcctgaatttaacacagagccaagcagccacttgttgactaaaggtcacacacatactttgagtaccctgaaaacccacacctctgctcaactttgggactttcagagctcacctgaaccaaccaaacatggctcagctgtatcagccaatcagaactaagagcattttaacccttaatttgcatgaatggatctgattgggaacctgagcaggaacttttgctataaaatccaaaccctccctttgttctctgg i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 2034295 314 + 2427316 gaacaaatgtgaaccagaaagagtcagcccttcaagatggatcccaaatggctcactgggcctgaatttaacacagagccaagcagccacttgttgactaaaggtcacacacatactttgagtaccctgaaaacccacacctctgctcaactttgggactttcagagctcacctgaaccaaccaaacatggctcagctgtatcagccaatcagaactaagagcattttaacccttaatttgcatgaatggatctgattgggaacctcagcaggaacttttgctataaaatccaaaccctccctttgttctctgg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1329866 314 + 1448899 gaacaaatgtgaaccagaaagagctagcccttcacgatggatcccaaatggctcactgggcctgaatttaacacagagccaagcagccacttgttgactaaaggtcacacacatactttgagttccctgaaaacccacacctctgctcaactttgggactttcagagctcacctgaaccaaccaaacagggctcagctgtatcagccaatcagaactaagaacattttaactcttaatttgcatgaatggatctgattgggaacctgagcaggaacttttgctgtaaaatccaaaccctccctttgttctctgg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53037642 311 - 190850796 gtacaaatgtgaaccagaaagagccagtccttcaagatggatcccaaatggctaactgagccaaaatttaaa--acagtcaagcagccacttgctgactagaggtcatgcacatactttaagttccctgaaaacccacacctctgctcaactttgggactttcagagctcacctgaaccaaccagtcaggactcagctgtatcagctaatcagaactaagagcattttaacccttaatctgcataaatggatctgattgggaacctgggcaggaacttttgctataaaacccaaaccttccctttgttctctg- i calJac3.chr3 C 0 I 599 s saiBol1.JH378162 8197739 313 - 15139346 gaactaatgtgaaccagaaagagccagtccttcaagatggatcccaaatggctaactgggctgaaatttaaaacacagtcaagcggccccttgctgactagaggtcacgcacatactttaagttccctgaaaacccacacctctgctcaactttgggactttcagagctcacctgaaccaaccaatcagcactcagctgtatcagctaatcagaactaagagcattttaacctttaatttgcataaatggatctgattgggaacctgggcaggaacttttgctataaaacccaaacccttcc-ttgttctctgg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6982968 314 - 7304997 aaacaaatgtgaaccagaaagagccaatccttcaacgtggatcccaaatggctaaccgcgctgaaatttaaaacacagtcaagcggctccttgctgactagaggtcacgcacatactttaagttccctgaaaacccacacctctgctcaactttgggactttcagagctcacctgaaccaaccaatcaggactcagctgtatcagctaatcagaactaacagcattttaacccttaatttgcataaatggatctgattgggaacctgggcaggaacttttgctataaaacccaaaccctccctttgttctctgg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399452 314 - 11631747 gaacaaatgtgaaccagaaagagccaatccttcaagatggatcccaaatggctaactgtgccaaaatttaaaacacagtcaagcggccacttgctgactagaggtcacgtacatactttaagttccctgaaaacccacacctctgctcaactttgggactttcagagctcgcctgaaccaaccaatcaggactcagctgtgtcagctaatcagaactaagagcactttaacccttaatttgcataaatggatctgattgggaacctgggcaggaacttttgctataaaacccagaccttccctttgttctctgg i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1888042 106 + 4188776 I e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I e mm10.chr5 76436128 309 + 151834684 I e dasNov3.JH568349 4115355 0 - 5279953 C e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48020497 0 + 63241923 C e chlSab2.chr7 122922390 0 - 135778131 C a score=788098.000000 s hg38.chr4_KI270787v1_alt 84019 108 + 111943 aacacacctttgttttacaccaggc------tgttacaccaggctgtgtcaccccagtttgcactggaatgaagtctctttcctccaaattcattttcaaataacttttgttta s panTro5.chr4 119651251 106 - 194502333 aacacacctttgttttacaccaggc------tgttacaccaggctgtgtcaccccagtttgcactggaatgaagtctctttcctccaaattcattttcaaataactt--gttta i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064790 106 - 195804263 aacacacctttgttttacaccaggc------tgttacaccaggctgtgtcaccccagtttgcactggaatgaagtctctttcctccaaattcattttcaaataactt--gttta i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4494156 108 - 17550833 aacacacctttgttttacaccaggc------tgttacaccaggctgtgtcaccccagtttgcactggaataaagtctctttcctccaaattcattttcaaataacttttgttta i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69363283 95 - 118206036 aacacacctttgtt-------------------ttacaccaggctgtgtcaccccagtttgcactggaataaagtctctttcctccaaattcattttcaaataacttttgttta i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111575674 114 - 190429646 aacacacctttgttttgcaccaggttgtgtgtgtcacactaggctgtgtcaccccagtttgcactggaataaagtctcttccctccaaattcattttcaaataactcttgttta i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110744857 114 - 189454096 aacacacctttgttttgcaccaggttgtgtgtgtcacactaggctgtgtcaccccagtttgcactggaataaagtctcttccctccaaattcattttcaaataactcttgttta i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13311328 110 + 26754465 aacacacctttgttttgcaccaggt----tgtgttacactaggctgtgtcaccccagtttgcactggaataaagtctcttccctccaaattcattttcaaataactcttgttta i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4212902 110 - 5137665 aacacacctttgttttgcaccaggt----tgtgttacactaggctgtgtcaccccagtttgcacgggaataaagtctcttccctccaaattcattttcaaataactcttgttta i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 2034609 110 + 2427316 aacacacctttgttttgcaccaggt----tgtgttacactaggctgtgtcaccccagtttgcacgggaataaagtctcttccctccaaattcattttcaaataactcttgttta i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1330180 110 + 1448899 aacacacctttgttttgcaccaggt----tgtgtcatactaggctttgtcaccccagtttgcactggaataaagtctcttccctccaaattcattttcaaataactcttgttta i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53038552 93 - 190850796 aacacacctttgttttacaccaggc-------------------tgcatctccccagtttgcactggaataaagtctct--cctccaaatcccttttcaaataacttttgttTG i calJac3.chr3 I 599 C 0 s saiBol1.JH378162 8198052 93 - 15139346 aacacaactttgttttataccaggc-------------------tgcaactccccagtttgcactggaataaagcctct--cctccaaatcccttttcaaataacttttgttta i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6983282 93 - 7304997 aacacacctttgttttacaccaggc-------------------tgcatctccccagtttgcactggaataaagtctct--cctccaaatcccttttcaaataacttttgttTG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399766 93 - 11631747 aacacacctttgttttacaccaggc-------------------tgcacctccccagtttgcattggaataaagtctct--cctccaaatcccttttcaaataacttttgttta i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1888042 106 + 4188776 I e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I e mm10.chr5 76436128 309 + 151834684 I e dasNov3.JH568349 4115355 0 - 5279953 C e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48020497 0 + 63241923 C e chlSab2.chr7 122922390 0 - 135778131 C a score=5658.000000 s hg38.chr4_KI270787v1_alt 84127 1 + 111943 c s panTro5.chr4 119651357 1 - 194502333 c i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064896 1 - 195804263 c i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4494264 1 - 17550833 c i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69363378 1 - 118206036 c i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111575788 1 - 190429646 c i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110744971 1 - 189454096 c i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13311438 1 + 26754465 c i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4213012 1 - 5137665 c i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 2034719 1 + 2427316 c i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1330290 1 + 1448899 c i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53038645 1 - 190850796 T i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8198145 1 - 15139346 t i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6983375 1 - 7304997 T i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399859 1 - 11631747 t i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4115355 1 - 5279953 C i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1888042 106 + 4188776 I e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I e mm10.chr5 76436128 309 + 151834684 I e otoGar3.GL873602 8629523 5660 + 8790067 I e canFam3.chr13 48020497 0 + 63241923 C e chlSab2.chr7 122922390 0 - 135778131 C a score=91341.000000 s hg38.chr4_KI270787v1_alt 84128 9 + 111943 aTTACCTTG s panTro5.chr4 119651358 9 - 194502333 aTTACCTTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064897 9 - 195804263 aTTACCTTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4494265 9 - 17550833 aTTACCTTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69363379 9 - 118206036 aTTACCTTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111575789 9 - 190429646 aTTACCTTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110744972 9 - 189454096 aTTACCTTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13311439 9 + 26754465 aTTACCTTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4213013 9 - 5137665 aTTACCTTG i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 2034720 9 + 2427316 aTTACCTTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1330291 9 + 1448899 aTTACCTTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53038646 9 - 190850796 ATTACCTGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8198146 9 - 15139346 aTTACCTGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6983376 9 - 7304997 ATTACCTGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399860 9 - 11631747 aTTACCTGG i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8635183 9 + 8790067 actgccttg i otoGar3.GL873602 I 5660 C 0 s dasNov3.JH568349 4115356 9 - 5279953 GCTACCTTC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1888042 106 + 4188776 I e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I e mm10.chr5 76436128 309 + 151834684 I e canFam3.chr13 48020497 0 + 63241923 C e chlSab2.chr7 122922390 0 - 135778131 C a score=101401.000000 s hg38.chr4_KI270787v1_alt 84137 8 + 111943 AGTTGCTT s panTro5.chr4 119651367 8 - 194502333 AGTTGCTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064906 8 - 195804263 AGTTGCTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4494274 8 - 17550833 AGTTGCTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69363388 8 - 118206036 AGTTGCTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111575798 8 - 190429646 AGTTGCTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110744981 8 - 189454096 AGTTACTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13311448 8 + 26754465 AGTTGCTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4213022 8 - 5137665 AGTTGCTT i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 2034729 8 + 2427316 AGTTGCTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1330300 8 + 1448899 AGTTGCTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53038655 8 - 190850796 AGTTGCTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8198155 8 - 15139346 AGTTGCTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6983385 8 - 7304997 AGTTGCTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399869 8 - 11631747 AGTTGCTT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8635192 8 + 8790067 tGTTGCTT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48020497 8 + 63241923 aattgctt i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4115365 8 - 5279953 Aattacct i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1888042 106 + 4188776 I e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I e mm10.chr5 76436128 309 + 151834684 I e chlSab2.chr7 122922390 0 - 135778131 C a score=192819.000000 s hg38.chr4_KI270787v1_alt 84145 14 + 111943 TCTTGAATTAATTT s panTro5.chr4 119651375 14 - 194502333 TCTTGAATTAATTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064914 14 - 195804263 TCTTGAATTAATTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4494282 14 - 17550833 TCTTGAATTAATTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69363396 14 - 118206036 TCTTGAATTAATTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111575806 14 - 190429646 TCTTGAATTAATTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110744989 14 - 189454096 TCTTGAATTAATTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13311456 14 + 26754465 TCTTGAATTAATTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4213030 14 - 5137665 TCTTGAATTAATTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122922390 14 - 135778131 TCTTGAATTAATTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2034737 14 + 2427316 TCTTGAATTAATTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1330308 14 + 1448899 TCTTGAATTAATTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53038663 14 - 190850796 TCTTGAATTAATTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8198163 14 - 15139346 TCTTGAATTAATTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6983393 14 - 7304997 TCTTCAAATAATTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399877 14 - 11631747 TCTTGAATTAATTT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8635200 14 + 8790067 TCTTGAGTATATTT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48020505 14 + 63241923 tcttgaattaattt i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4115373 13 - 5279953 -cttaaattaattc i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1888042 106 + 4188776 I e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I e mm10.chr5 76436128 309 + 151834684 I a score=111623.000000 s hg38.chr4_KI270787v1_alt 84159 8 + 111943 TGTACCCA s panTro5.chr4 119651389 8 - 194502333 TGTACCCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064928 8 - 195804263 TGTACCCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4494296 8 - 17550833 TGTACCCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69363410 8 - 118206036 TGTACCCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111575820 8 - 190429646 TGCACCCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110745003 8 - 189454096 TGCACCCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13311470 8 + 26754465 TGCACCCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4213044 8 - 5137665 TGCACCCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122922404 8 - 135778131 TACACCCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2034751 8 + 2427316 TGCACCCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1330322 8 + 1448899 TGTACCCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53038677 8 - 190850796 TGTACCCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8198177 8 - 15139346 TGTACCCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6983407 8 - 7304997 TGTACCCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399891 8 - 11631747 TGTACCCA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8635214 8 + 8790067 TGTCCCTT i otoGar3.GL873602 C 0 I 38 s mm10.chr5 76436437 8 + 151834684 TGGACCag i mm10.chr5 I 309 C 0 s canFam3.chr13 48020519 8 + 63241923 tgcaccca i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4115386 8 - 5279953 tgcaccca i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1888042 106 + 4188776 I e micMur3.chrUn_NW_017968520v1 1797731 373 + 3286835 I a score=37670.000000 s hg38.chr4_KI270787v1_alt 84167 2 + 111943 CT s panTro5.chr4 119651397 2 - 194502333 CT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064936 2 - 195804263 CT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4494304 2 - 17550833 CT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69363418 2 - 118206036 CT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111575828 2 - 190429646 CT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110745011 2 - 189454096 CT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13311478 2 + 26754465 CT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4213052 2 - 5137665 CT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122922412 2 - 135778131 CT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2034759 2 + 2427316 CT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1330330 2 + 1448899 CT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53038685 2 - 190850796 CT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8198185 2 - 15139346 CT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6983415 2 - 7304997 CT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399899 2 - 11631747 CT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1798104 2 + 3286835 ct i micMur3.chrUn_NW_017968520v1 I 373 C 0 s otoGar3.GL873602 8635260 2 + 8790067 cc i otoGar3.GL873602 I 38 C 0 s mm10.chr5 76436445 2 + 151834684 ct i mm10.chr5 C 0 I 1 s canFam3.chr13 48020527 2 + 63241923 ct i canFam3.chr13 C 0 I 27 s dasNov3.JH568349 4115394 2 - 5279953 ct i dasNov3.JH568349 C 0 I 33 e proCoq1.NW_012140747v1 1888042 106 + 4188776 I a score=5988125.000000 s hg38.chr4_KI270787v1_alt 84169 396 + 111943 aaat---------gaggc---------tcagagaggctaaatcatttacccaaagtcacacaacaattgaacagcagagtaaggactagaatttag--------ctctctctgactacaaaactctgtttac--tacaccacactgcttTCTGGCTTCTTGAATAAGTTGCTCGTAATGAAATG----AGTTATTCCTACTGAACAAGTTC----AAAATAAAGAT-------GAAACCAGAAGTGTGCTGTGAAT-----AACTGGATGACACACATCCAAAGATCACTCAATTTCCTAAGTAC---TCAGGGACAAGCTTTTGTAAAATCTGGACCTCAGATGAACAATCAGCAACATACTCCCGAACAGGCTTAATCACCACTCTCAGAGGGACATTTATTTCTCAGTGCTTAGAACTC-TTTTTTCTAGTACTCTAGATCCATT s panTro5.chr4 119651399 395 - 194502333 aaat---------gaggc---------tcagagacgctaaatcatttacccaaagtcacacaacaattgaacagcagagtaaggactagaatttag--------ctctctctgactacaaaactctgtttac--tacaccacactgcttTCTGGCTTCTTGAATAAGTTGCTCGTAATGAAATG----AGTTATTCCTACTGAACAAGTTC----AAAATAAAGAT-------GAAACCAGAAGTGTGCTGTGAAT-----AACTGGATGACACACATCCAAAGATCACTCAATTTCCTAAGTAC---TCAGGGACAAGCTTTTGTAAAATCTGGACCTCAGATGAACA-TCAGCAACATACTCCCGAACAGGCTTAATCACCACTCTCAGAGGGACATTTATTTCTCAGTGCTTAGAACTC-TTTTTTCTAGTACTCTAGATCCATT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121064938 395 - 195804263 aaat---------gaggc---------tcagagacgctaaatcatttacccaaagtcacacaacaattgaacagcagagtaaggactagaatttag--------ctctctctgactacaaaactctgtttac--tacaccacactgcttTCTGGCTTCTTGAATAAGTTGCTCGTAATGAAATG----AGTTATTCCTACTGAACAAGTTC----AAAATAAAGAT-------GAAACCAGAAGTGTGCTGTGAAT-----AACTGGATGACACACATCCAAAGATCACTCAATTTCCTAAGTAC---TCAGGGACAAGCTTTTGTAAAATCTGGACCTCAGATGAACA-TCAGCAACATACTCCCGAACAGGCTTAATCACCACTCTCAGAGGGACATTTATTTCTCAGTGCTTAGAACTC-TTTTTTCTAGTACTCTAGATCCATT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4494306 394 - 17550833 aaat---------gaggc---------tcagagaggctaaatcatttacccaaagtcacacaacaattgaacagcagagtaaggactagaatttag--------ctctctct--ctacaaaactctgtttac--tacaccacactgcttTCTGGCTTCTTGAATAAGTTGCTCGTAATGAAATG----AGTTATTCCTACTGAACAAGTTC----AAAATAAAGAT-------GAAACCAGAAGTGTGCTGTGAAT-----AACTGGATGACACACATCCAAAGATCACTCAATTTCCTAAGTAC---TCAGGGACAAGCTTTTGTAAAATCTGCACCTCAGATGAACAATCAGCAACATACTCCCGAACAGGCTTAATCACCACTCTCAGAGGGACATTTATTTCTCAGTGCTTAGAACTC-TTTTTTCTAGTACTCTAGATCCATT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69363420 396 - 118206036 aaat---------gaggc---------tcagagagactaaatcatttacgcaaagtcccacagcaattgaacagcagagtaaggactagaatttaa--------ctctctctgactacaaaactctgtttac--tacaccacactgcttTCTGGCTTCTTGAATAAGTTGCTCATAATGAAATG----AATTATTCCTACTGAACAAGTTC----AAAATAAAGAC-------GAAACCAGAAGTGTGCTGTGAAT-----AACGGGATGACACACATCCAAAGATCACTCAATTTCCTAAGTAC---TCAGGGACAAGCTTTTATAAAATCTGGATCTCAGATGAACAATCAGCAACATACTCCTGAACAGGCTTAATCACCACTCTCAGAGGGACATTTATTTCTCAGTGCTTAGAACTC-TTTTTTCTAGTACTCTAGATCCATT i nomLeu3.chr9 C 0 I 304 s rheMac8.chr5 111575830 394 - 190429646 aaat---------gagta---------tcagagaggctaaatcatttacccaaagtcacacagcaattgagcagcagagtaaggactagaattcag--------ctctctctgactacaaaactc--tttac--tacaccacactgcttTCTGGCTTCTTGAATAAGTTGCTCATAATGAAATG----AGTTATTCCTACTGAACAAGCTC----AAAATAGAGAC-------GAAACCAGAAGTGTACTGTGAAT-----AACTGGATGACACACATCCAAAGATCACTCAATATCCTAAGTAC---TCAGGGACAAGCTTTTGTAAAATCTGGACCTCAGATGAACAATCAGCAACATACTCCTGAACAGGCTGAATCACCACTCTCAGAGGGACATTTATTTCTCAGTGCTTAGAACTC-TTTTTTCTAGTACTCTAGATCCATT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110745013 396 - 189454096 aaat---------gagta---------tcagagaggctaaatcatttacccaaagtcacacagcaattgagcagcagagtaaggactagaatttag--------ctctctctgactacaaaactctgtttac--tacaccacactgcttTCTGGCTTCTTGAATAAGTTGCTCATAATGAAATG----AGTTATTCCTACTGAACAAGCTC----AAAATAGAGAC-------GAAACCAGAAGTGTACTGTGAAT-----AACTGGATGACACACATCCAAAGATCACTCAATATCCTAAGTAC---TCAGGGACAAGCTTTTGTAAAATCTGGACCTCAGATGAACAATCAGCAACATACTCCTGAACAGGCTGAATCACCACTCTCAGAGGGACATTTATTTCTCAGTGCTTAGAACTC-TTTTTTCTAGTACTCTAGATCCATT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13311480 396 + 26754465 aaat---------gagta---------tcagagaggctaaatcatttacccaaagtcacacagcaattgagcagcagagtaaggactagaatttag--------ctctctctgactacaaaactctgtttac--tacaccacactgcttTCTGGCTTCTTGAATAAGTTGCTCATAATGAAATG----AGTTATTCCTACTGAACAAGCTC----AAAATAGAGAC-------GAAACCAGAAGTGTACTGTGAAT-----AACTGGATGACACACATCCAAAGATCACTCAATATCCTAAGTAC---TCAGGGACAAGCTTTTGTAAAATCTGGACCTCAGATGAACAATCAGCAACATACTCCTGAACAGGCTGAATCACCACTCTCAGAGGGACATTTATTTCTCAGTGCTTAGAACTC-TTTTTTCTAGTACTCTAGATCCATT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4213054 396 - 5137665 aaat---------gagga---------tcagagaggctaaatcatttacccaaagtcacacagcaattgagcagcagagtaaggactagaatttag--------ctctctctgactacaaaactctgtttac--tacaccacactgcttTCTGGCTTCTTGAATAAGTTGCTCATAATGAAATG----AGTTATTCCTACTGAACAAGCTC----AAAATAGAGAC-------GAAACCAGAAGTGTACTGTGAAT-----AACTGGATGACACACATCCAAAGATCACTCAATATCCTAAGTAC---TCAGGGACAAGCTTTTGTAAAATCTGGACCTCAGATGAACAATCAGCAACATACTCCTAAACAGACTTAATCACCACTCTCAGAGGGACATTTATTTCTCAGTGCTTAGAACTC-TTTTTTCTAGTACTCTAAATCCATT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122922414 396 - 135778131 aaat---------gagga---------tcagagaggctaaatcatttacccaaagtcacacagcaattaagcagcagagtaaggactagaatttag--------ctctctctgactacaaaaccctgtttac--tacaccacattgcttTCTGGCTTCTTGAATAAGTTGCTCATAATGAAATG----AGTTATTCCTACTGAACAAGCTC----AAAATAGAGAC-------GAAACCAGAAGTGTACTGTGAAT-----AACTGGATGACACACATCCAAAGATCACTCAATATCCTAAGAAC---TCAGGGACAAGCTTTTGTAAAATCTGGACCTCAGATGAACAATCAGCAACATACTCCTGAACAGACTTAATCACCACTCTCAGAGGGACATTTATTTCTCAGTGCTTAGAACTC-TTTTTTCTAGTACTCTAGATCCATT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2034761 395 + 2427316 aaat---------gagga---------tcagagaggctaaatcatttacccaaagtcacacagcaattgagcagcagagtaaggactagaatttag--------ctctctctgactacaaaactctgtttac--tacaccacactgcttTCTGGCTTCTTGAATAAGTTGCTCATAATGAAATG----AGTTATTCCTACTGAACAAGCTC----AAAATAGAGAC-------GAAACCAGAAGTGTACTGTGAAT-----AACTGGATGACACACATCCAAAGATCACTCAATATCCTAAGTAC---TCAGGGACAAGCTTTTGTAAAATCTGGACCTCAGATGAACAATCAGCAACATACTCCTAAACAGACTTAATCACCACTCTCAGAGGGACATTTATTTCTCAGTGCTTAGAACT--TTTTTTCTAGTACTCTAAATCCATT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1330332 395 + 1448899 aaat---------gagga---------tcagagaggctaaatcatttacccaaagtcacacagcaattgagcagcagcgtaaggactagaatttag--------ctctctctgactac-aaacactgtttac--tacaccacactgcttTCTGGCTTCTTGAATAAGTTGCTCATAACGAAATG----AGTTATTCCTACTGAACAAGCTC----GAAATAGAGAC-------GAAACCAGAAGTGTACTGTGAAT-----AACTGGATGACACACGTCCAAAGATCACTCAATATCCTAAGTGC---TCAGGGACAAGCTTTTGTAAAATCTGGACCTCAGATGAACAATCAGCAACATACTCCTGAACAGGCTTAATCACCACTCTCAGAGGGACATTTATTTCTCAGTGCTTAGAACTC-TTTTTTCTAGTACTCTAGATCCATT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53038687 396 - 190850796 aaat---------gaggc---------tcagagaggctaagtcatttacccaaagtcacacagcaagtgagcagca----aaggactagaatttag--------ctctctccaactacaaaattctgttcac--tacaccatgctgcctTCTGACTTCTTGAATAAGTTGCTCATAATGAAATGAGTTAGTTATTCCTACTGAACAAGTTT----GAAATAAAGAC-------AAAACCAGAAGCATGCTGTGAAT-----AACTAGATGACACATATCCAAAGATCACTTAATTTCAAAAGTAC---TCAAGGACAAGCATTTGTAAAATCTGGACCTCAGATGAGCAATCGGCAACATATCCCTGCACAGGCTTAATCACCACTCTCAGAGGGACATTCATTTCCCAGTGCTTAGAACTC-TTTTTTCTAATACTCTAGATCCATT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8198187 396 - 15139346 aaat---------gaggc---------tcagagaggctaagtcatttacccaaagtcacgcagcaagtgagcagca----aaggactagaatttag--------ctctctccaactacaaaattctgttcac--gacaccacactgcctTCTGACTTCTTGAATAAGTTGCTCATAATGAAATGAGTTAGTTATTTCTACTGAACAAGTTT----GAAACAAAGAC-------AAAACCAAAATTATGCTGTGAAC-----AACTGGATGACACATATCCAAAGATCACTCAATTTCCTAAGTAC---TCAGGGACAAGCATTTGTAAAATCTGGACCTCAGATGAACAATCAGCAACATATTCCTGAACAGGCTTAATCACCACTCTCAGAGGGACATTCATTTCCCAGTGCTTAGAACTC-TTTTTTCTAATACTCTAGATCCATT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6983417 400 - 7304997 aaat---------aaggc---------tcagagaggctaagtcatttacccaaagtcacacagcaagtgagcagccgagtaaggactagaatttag--------ctctctctgactacgaaattctgttcac--tacaccacactgcctTCTGACTTCTTGAATAAGTTGCTCATAGTGAAATGAGTTAGTTATTCCTACTGAACAAGTTT----GAAATAAAGAC-------AAAACCAGAAGTATGCGGTGAAT-----AACTGGATGACACATATCCAAAGATCACTCAATTGCCTAAGTAC---TCAGGGACAGGCATTTGTAAAATCTGGACCTCAGATGAACAATCAGCAACATATTCCTGAACAGGCTTAATCACCACTCTCAGAGGGACATTCATTTCCCAGTGCTTAGAACTC-TTTTTTCTAATACTATAGATCCATT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9399901 396 - 11631747 aaat---------gaggc---------tcagagaggctaagtcatttacccaaagtcacacagcaagtgagcagca----aaggactagaatttag--------ctctctccaactacaaaattctgttcac--tacaccacactgcctTCTGACTTCTTGAATAAGTTGCTCATAATGAAATGAGTTAGTTATTCCTACTGAACAGGTTT----GAAATAAAGAC-------AAAACCAGAAGTATGCTGTGAAT-----AACTAGATGACACATATCCAAAGATCACTTAATTTCAAAAGTAC---TCAAGGACAAGCATTTGTAAAATCTGGACCTCAGATGAACAATCAGCAACATATTCCTGAACAGGCTTAATCACCACTTTCAGAGGGACATTCATTTCCCAGTGCTTAGAACTC-TTTTTTCTAATACTCTAGATCCATT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1798106 402 + 3286835 agat---------gaggc---------tcagagaggctaagtcatttgcccaaagtcacacagcaagtgaatagcagagtcaggattagaatttag--------ccctct--gactgcaaaattctcttcat--tataatatactgcttTCTGACTTCTGGAATAAGCTTCTCAGAAAGAGATA----AGATATTCCCACTAAACAAGTCT----GAAATAAAGACAAGACTAGAAACAATAAGTGCACTGTGAAT-----AACTGGGTAACACGTATCCAAAGATCACTCAATTTCCTAAGTACTTGTTGGGAGCAAGCTTTTATAAAATCTGGATCTCAGATGAACAATCAGCAACACGCTGCCAAAGAGGATTAATCACCATTCCCAGAGGGCCATTTATTTCTCAGTGCTTAGAA--C-TCTTTTCTAGTACTCCAGATCCAAT i micMur3.chrUn_NW_017968520v1 C 0 I 1 s proCoq1.NW_012140747v1 1888148 404 + 4188776 aaat---------gaggc---------tcagagaggctaagtcatttacccaaagtcacacagcaagtgaacagcagagtcgggattagaatttat--------ctctct--gactgcaaaattctgttcat--catactacactgcttTCTGACTTCTGGAATAAGTTGCTCAGAAAGAGATA----AGTTATTCCTACTGAACAAGTCT----GAAATAAAGACAAGAATAGAAACGATAAGTGCACTGTGAAT-----AACTGGGTAACACACATCCAAAGATCACTCAATTTCCTAAGTACTTCTTGAGAACGAGCTTTTGTAAAATCTGGACCTCAGATGAACAATCAGCAACATGCTGCCAAGGAGGATTAATCACCATGCCCAGAGGGCCATTTATTTCTCAGTGCTTAGAACTC-TCTTTTCTAGCACTCCAGATCCAAT i proCoq1.NW_012140747v1 I 106 I 1 s otoGar3.GL873602 8635262 378 + 8790067 aaat---------gaggc---------tcagagaggcaaagtcatttactcaaagttacatagcaagtgaatagcagagtcaggattagaatttag--------ctctct--gac------------------------tATGCTGCTTTTGGACTTCTTGGATAAGTTTCTAAGAAAGTGGTA----AATTATTTCTGCTAAATAAGTTC----GAAATAAAGGC-AGACTGGAAACTCTAAGTGCACTGTGCAT-----AACTGGGTGACACACATCCAAAGTTCA-TCGATTTCCTAAGTACTGGTAGTGAACAAGCTTCTGTAAAATGTAGACCTCAGATGAACCATCAGCAGCCTGCTGCTAAAGAGGATTAATCACTAGTCCCAGAGGGCCACTTG-TTCTTGGTGCTTAGAACTC-TGTTTTCTAGTA-TCCAGATCTATT i otoGar3.GL873602 C 0 I 1 s mm10.chr5 76436448 371 + 151834684 agat---------gag--------------gagaggctaagtcactaccccaaagaggcacattgaggaagcagtggagctggaattcaaatctaa--------ctctct------gcaaa---tcattcac--tatactatcctgtTTCC---CACCTTGGACTAACTACTT---------------GGATGTTACTACCCAACATTTTTAAAGAAAATCAGGCT-------GTAGACTGCAGGAGACCATGAAC-----CAATGAGTGGCACCCACATCCAGATCATTCCACCTCTTACATACTTTCTGGAGACAAGTTTTCACAAAACATGTAGGTCAGATTAATAACAGGCCATGTGCTACTG---AGACTTAATGGCTGTTCTCATAGGTCCATTTGCTTCACAG-ACTCAACATGC-TCTTATCCAGGAATCTAGATTAAAA i mm10.chr5 I 1 I 8 s canFam3.chr13 48020556 413 + 63241923 aaattagcccacagagac---------ttagagaggctaagtcacttattctaagtc-cacagcaagtaagtagccaagccaggatccgaacttca--------ttctctctgatggcaaaactgtatttactatacactacagtgcctttGAACTTCTTGAATAAGTTGTTCATA-TCAAATG----AGTTGTTCCTGCTGAGAAAATTA----GAAATAAAAGCAAAACTGGAAACTGTAAGTGTTCTGTGAAT-----AACAGTGTAAAATACATCCCAAAATTGCTCTATTTGCTAA--ACTTGTTGGGGACAAGTTTTTGCAAAATCTGGACCTTGGATGAACAATCAGCAATGTGCTGATTGAGAGGCTTAATCACTGTTCTCAGAGGAATATCTATTTCTCAGTGATGAGAATCCTTTTTTTCTAGGACTCCA-ATCCAGC i canFam3.chr13 I 27 C 0 s dasNov3.JH568349 4115429 401 - 5279953 agat---------gaggccactgagattcagagaggctaagacattcacccaagaccacacagcaagtaaatagcagagccaggattagaactcaggattggaagcctctctgactcc---actgcaTGCAC--AAAGCTAAACTGCTTTCAGACTTCTTGAATAACTTGCTCATATTAAGTAA----GTTTGTACTTACTGAAC-----T----G-----------------GAAGCTATGAGTGCACTGCAGATGAGGCAACTGGGTAACACACATCC--AGATCACTCAATTTCCCAAGTACTTCTTGGGGACAAGATTTTGCAAAACCTGGACTTTGGATGATCAATCAGCAGCAAGCTGCTGAAGAGGACTAATGACTATTTTCAAGGGAACATTTATTCCTCAGTGCTTGGGACCC-TCTTTTCCAGGACACCAGATCCAAT i dasNov3.JH568349 I 33 C 0 a score=7863819.000000 s hg38.chr4_KI270787v1_alt 84565 495 + 111943 AAAACCTAAAATGGTTTGGATGTATCAAGTTTCTGAGTAAAC-AACAA----C-----AAACAAAACAAAACCAGGaagagaaaattgtg-aattgtaacggcc-actgtaactttcttaggcaaccacacca-gtactgctgacagccactcactcaattttagataggacctgttatgcatgtgttcaaaatacaaaactaggacttcaag--tttcctgtggc--cactcagtctctgccacagtatgtgttttc---------------------------------------------ccacaaa--ggcagacactgctgaaactgccccactgcctgtctacagcagagcgcacaccatggctctagatgcaccagcatgaagctgctttccaaaata-ca-ggcagttgttgacatctgaggtt-tgctaatgtcctgagatgaacttccaccgctgaggtttccctgactgctcaggagaggagcttggctgccaagtgccagatggcatagaagtgccaactgcttacttctcaGTACCCAACCCCAGCTTT s panTro5.chr4 119651794 495 - 194502333 AAAACCTAAAATGGTTTGGATGTATCAAGTTTCTGAGTAAAC-AACAA----C-----AAACAAAACAAAACCAGGaagagaaaattgtg-aattgtaacggcc-actgtaactttctcaggcaaccacacca-gtactgctgacagccactcactcaattttagataggacctgttatgcatgtgttcaaaatacaaaactaggacttcacg--tttcctgtgtc--cactctgtctctgccacagtatgtgttttc---------------------------------------------ctacaaa--ggcagacactgctgaaactgccccactgcctgtctacagcagagcgcacaccatggctctagatgcaccagcatgaagctgctttccaaaata-ca-ggcagttgttgacatctgaggtt-tgctaatgtcctgagatgaacttccaccactgaggtttccctgactgctcaggagaggagcttggctgccaagtgccagatggcatagaagtgccaactgcttacttctcaGTACCCAACCCCAGCTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121065333 495 - 195804263 AAAACCTAAAATGGTTTGGATGTATCAAGTTTCTGAGTAAAC-AACAA----C-----AAACAAAACAAAACCAGGaagagaaaattgtg-aattgtaacggcc-actgtaactttctcaggcaaccacacca-gtactgctgacagccactcactcaattttagataggacctgttatgcatgtgttcaaaatacaaaactaggacttcaag--tttcctgtggc--cactcagtctctgccacagtatgtgttttc---------------------------------------------ctacaaa--ggcagacactgctgaaactgccccactgcctgtctacagcagagcgcacaccatggctctagatgcaccagcatgaagctgctttccaaaata-ca-ggcagttgttgacatctgaggtt-tgctaatgtcctgagatgaacttccaccgctgaggtttccctgactgctcaggagaggagcttggctgccaagtgccagatggcatagaagtgccaactgcttacttctcaGTACCCAACCCCAGCTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4494700 495 - 17550833 AAAACCTAAAATGGTTTGGATGTATCAAGTTTCTGAGTAAAC-AACAA----C-----AAACAAAACAAAACCAGGaagagaaaattgtg-aattgtaacagcc-actgtaactttcttaggcaaccacacca-gtactgctgacagccgctcactcaattttagataggacctgttatgcatgtgttcaaaatacaaaaccaggacttcaag--tttcctgtggc--cactcggtctctgccacagtatgtgttttc---------------------------------------------ccacaaa--ggcagacactgctgaaactgccccactgcctgtctacagcagagcgcacaccatggctctagatgcaccagcatgaagctgctttccaaaata-ca-ggcagttgttgacatctgaggtt-tgctaatgtcctgagatgaacttccaccgctgaggtttccctgactgctcaggagaggagcttggctgccaagtgccagatggcatagaagtgccaactgcttacttctcaGTACCCAACCCCAGCTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69364120 487 - 118206036 aaaaCCTAAAATGGTTTTGATGTATCAAGTTTCTGAGTAaac-aacaa----c-----aaacaaaacaaca--------agaaAATTGTG-AATTGTAATGGCC-TCTGTAACTTTCTTAGGCAACCACACCA-GTACTGCTGACAGCCACTCACTCAGTTTTAGATAGGACCTGTTATGCATGTGTTCAAAATACAAAACTAGGACTTCAAG--TTTCCTGTGGC--CACTCAGTCTCTGCCACAGTATGTGTTTTC---------------------------------------------CCACAAA--GGCAGACACTGCTGAAACTGCTCCACTGCCTGGCTACAGCAGAGTGCACACCATGGTTCTAGATGCACCAGCATGAAACTGCTTTCCAAAATA-CA-GGCAGTTGTTGACATCTGAGGTT-TGCTAATGTCCTGAGATGAACTTCCACTGCTGAGGTTTCCCTGACTGCTCAGGAGAGGAGCTTGGCTGCCAAGTGCCAGATGGCCTAGAAGTGCCAATTGCTTACTTCTCAGTACCCAAACCCAGCTTT i nomLeu3.chr9 I 304 C 0 s rheMac8.chr5 111576224 495 - 190429646 AAAACCTAAAATGGTTTTGATGTATCAAGTTTCTGAGCAAAC-AATAA----C-----AAACAAAACAAAACCAGGaagagaaaattgtg-aattgtaacggcc-actgtaactttcttaggcaaccacacca-gtactgctgatagccactcactcagttttagataggacctgtaatgcatgtgttcaaaatacaaaactaggacttcaag--tttcccgtggt--cactcagtctctgccacagtatttgttttc---------------------------------------------ccacaaa--ggcagacactgctgaagctgccccactgcctggctacagcggagcacacaccatggttctagatgcaccagcatgaagctgctttccaaaata-ca-ggcagttgttgacatccgaggtt-tgctaatgtcctaagatgaacttccaccgctgaggtttccctgactgctcaggagaggagcttggctgccaagtgccagatgacatagaagtgccaactgcttacttctcaGTACCCAACCCCAGCTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110745409 495 - 189454096 AAAACCTAAAATGGTTTTGATGTATCAAGTTTCTGAGCAAAC-AATAA----C-----AAACAAAACAAAACCAGGaagagaaaattgtg-aattgtaacggcc-actgtaactttcttaggcaaccacacca-gtactgctgatagccactcactcagttttagataggacctgtaatgcatgtgttcaaaatacaaaactaggacttcaag--tttcccgtggt--cactcagtctctgccacagtatttgttttc---------------------------------------------ccacaaa--ggcagacactgctgaagctgccccactgcctggctacagcggagcacacaccatggttctagatgcaccagcatgaagctgctttccaaaata-ca-ggcagttgttgacatccgaggtt-tgctaatgtcctaagatgaacttccacggctgaggtttccctgactgctcaggagaggagcttggctgccaagtgccagatgacatagaagtgccaactgcttacttctcaGTACCCAACCCCAGCTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13311876 495 + 26754465 AAAACCTAAAATGGTTTTGATGTATCAAGTTTCTGAGCAAAC-AACAA----C-----AAACAAAACAAAACCAGGaagagaaaattgtg-aattgtaacggcc-actgtaactttcttaggcaaccacacca-gtactgctgatagccactcactcagttttagataggacctgtaatgcatgtgttcaaaatacaaaactaggacttcaag--tttcccgtggt--cactcagtctctgccacagtatttgttttc---------------------------------------------ccacaaa--ggcagacactgctgaagctgccccactgcctggctacagcggagcacacaccatggttctagatgcaccagcatgaagctgctttccaaaata-ca-ggcagttgttgacatccgaggtt-tgctaatgtcctaagatgaacttccaccgctgaggtttccctgactgctcaggagaggagcttggctgccaagtgccagatgacatagaagtgccaactgcttacttctcaGTACCCAACCCCAGCTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4213450 495 - 5137665 AAAACCTAAAATGGTTTTGATGTATCAAGTTTCTGAGCAAAC-AACAA----C-----AAACAAAACAAAACCAGGaagagaaaattgtg-aattgtaacggcc-actgtaactttcttaggcaaccacacca-gtactgctgatagccactcactcagttttagataggacctgtaatgcatgtgttcaaaatacaaaactaggacttcaag--tttcccgtggt--cactcagtctctgccacagtatttgttttc---------------------------------------------ccacaaa--ggcagacactgctgaagctgccccactgcctggctacaacggagcacacaccatggttctagatgcaccagcatgaagctgctttccaaaata-ca-ggcagttgttgacatctgaggtt-tgctaatgtcctaagatgaacttccaccgctgaggtttccctgactgctcaggagaggagcttggctgccaagtgccagatgacatagaagtgccaattgcttacttctcaGTACCCAACCCCAGCTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122922810 501 - 135778131 AAAACCTAAAATGGTTTTGATGTATCAAGTTTCTGAGcaaacaaacaa----caaacaaaacaaaacaaaacCAGGaagagaaaattgtg-aattgtaatggcc-actgtaactttcttaggcaaccacacca-gtactgctgatagccactcactcagttttagataggacctgtaatgcatgtgttcaaaatacaaaactaggacttcaag--tttcccgtggt--cactcagtctctgccacagtatttgttttc---------------------------------------------ccacaaa--ggcagacactgctgaagctgccccactgcctggctatagcggagcacacaccatggtactagatgcaccagcgtgaagctgctttccaaaata-ca-ggcagttgttgacatctgaggtt-tgctaatgtcctaagatgaacttccactgctgaggtttccctgactgctcaggagaggagcttggctgccaagtgccagatgacatagaagtgccaactgcttacttctcaGTACCCAGCCCCAGCTTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2035156 495 + 2427316 AAAACCTAAAATGGTTTTGATGTATCAAGTTTCTGAGCAAAC-AACAA----C-----AAACAAAACAAAACCAGGaagagaaaattgtg-aattgtaacggcc-actgtaactttcttaggcaaccacacca-gtactgctgatagccactcactcagttttagataggacctgtaatgcatgtgttcaaaatacaaaactaggacttcaag--tttcccgtggt--cactcagtctctgccacagtatttgttttc---------------------------------------------ccacaaa--ggcagacactgctgaagctgccccactgcctggctacaacggagcacacaccatggttctagatgcaccagcatgaagctgctttccaaaata-ca-ggcagttgttgacatctgaggtt-tgctaatgtcctaagatgaacttccaccgctgaggtttccctgactgctcaggagaggagcttggctgccaagtgccagatgacatagaagtgccaactgcttacttctcaGTACCCAACCCCAGCTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1330727 495 + 1448899 AAAACCTAAAATGGTTTTGATGTATCAAGTTTCTGAGCATAA-AACAA----C-----AAACAAAACAAAACCAGGaagagaaaattgtg-aattgtaacggcc-actgtaactttctcaggcaaccacacca-gtactgctgatagccactcactcagttttaggtaggacctgtaatgcatgtgttcaaaatacaaaattaggacttcaag--tttcccgtggc--cactcagtctctgccacagtatttgttttc---------------------------------------------ccacaaa--ggcagacgctgcggaaactgccccaccgcctggctacagcggagcacacaccatggttctagatgcaccagcatggagctgctttccaaaata-ca-ggcagttgttgacatctgaggtt-tgctaatgtcctaagatgaactgccaccgctgaggtttccctgactgctcaggagaggagcttggctgccaagtgccagatggcatagaagtgccaactgcttacttctcaGTACCCAACCCCAGCTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53039083 491 - 190850796 AAAACCTGAAATGGTTTTGACGTATCAAGTTTCTGAGCA----AACAA----C-----AAACAAAACAAAATCAGGAAGAGAAAATTGCG-ACTTGTAATGGCC-CCCATAACCTTCTTAGGAAACCACACCA-GTACTGCTGATAGACACTCGCTCCATTTTGAGTAGGACCTGTAATGTATGTGTTCAAAATACAAAACTAGGACTTCAAG--TTTCCTGTGGC--CACTCAGTCTCTGCCACAGTATTGGTTTTC---------------------------------------------CCACAAA--GGCAGACACTGCTGAGACTGTCCCACTGCCTGGCTATGGCAGAGCACACACCATGGTTCTAGATGCACCAGCATGAAGCTGCTTTCCAAAATA-CA-GGCAGTTGTTGACTTCTGAGGTT-TGCTCATGTCCTGGGATGAACTTCCACTGCTGAGGTTTCCCTGACTGCT-AGGAGAGGAGCTTGGCTGCCAAGTGCCAGGTGGCAAAGAAGGGCCAACTGCTTGCTTCTCAATACCCGATCCCAGCTTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8198583 487 - 15139346 AAAACCTGAAATGGTTTTGACGTATCAAGTTTCTGAGCA----AACAA----C-----AAACAAAAC-----CAGGAAGAGAAAATTGCG-ACTTGTAATGGCC-ACTGTAACTTTCTTAAGAAACCACACCA-GTACTGCTGATAAACACTAGCTCCATTTTAGATAGGACCTGTAATGCATGTGTTCAAAATACAAAACTAGGACTTCAAG--TTTCCTGTGGC--CACTCAGTCTCTGCCACAGTATTGGTTTTC---------------------------------------------CCACAAA--GGCAGACACGGCTGAGACTGTCCCACTGCCTAGCTACAGCAGAGCGCACACCACGGTTCTAGATGCACCAGCATGAAGCTGCTTTCCAAAATA-CA-GGCAGTTGTTGACGTCTGAGGTC-TGCTAATGTACTGGCATGAACTTCCACCGCTGAGGTTTCCCTGACTGCTCAGGAGAGGAGCTTGGCTCCCAAGTGCCAGGTGGCAAAGAAGTGCCAACTGCTTACTTCTCAATACCCAACCCCAGCTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6983817 492 - 7304997 AAAACCTGAAATGGTTTTGACGTATCAAGTTTCTGAGCA----AGCAA----C-----AAACAAAACAAAACCAGGAAGAGAAAATTGCG-ACTTGTAATGGcc-actgtaactctcttaggcaaccacacca-gtactgctgatagacactaggtccattttagataggacctgtaatgcatgtgttcaaaatccaaaactaggacttcaag--tttcctgtggc--cactcagcctctgccacagtattggttttc---------------------------------------------ccacaaa--ggcagacactgctgaggctgtcccactgcctggctacagcagagcgcacaccatggttctagatgcaccagcatgacgctgctttccaaaata-ca-ggcagttgttgacttctgaggtt-tgcaaatgtcctgagatgaacttccaccactgaggtttccctgactgctcaggagaggagcttggctgccaagtaccagttggcaaagaagtgccaactgcttacttctcaaTACCCGACCCCAGCTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9400297 491 - 11631747 AAAACCTGAAatggttttgatgtatcaagtttctgagca----aacaa----c-----aaacaaaacaaaaccaggaagagaaaattgcg-acttgtaatgg-c-accataacttccctaggaaaccacacca-gtactgctgatagacactcgctctattttagataggacctgtaatgcatgtgttcaaaatacaaaactaggacttcaag--tttcctgtggc--cactcagtctctgccacagtattggttttc---------------------------------------------ccacaaa--ggcggacactgctgagactgtcccactgcctggctacagcagagcacacaccatggttctagatgcaccagcatgaagctgctttccaaaata-ca-ggcagttgttgatttctgaggtt-tgctaatgtcctgggatgaacttccatcgctgagatttccctgactgctcaggagaggagcttggctgccaagtgccaagtggcaaagaagtgccaactgcttacttctcaaTACCCGACCCCAGCTTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1798509 493 + 3286835 AAAATCGAAAatggttttgatgtatcaagtatcttagcaaac-aac-------------aactaagcaaaatcaggaagagaaaattgtg-aactataatggccaactctgactttcttaggcaaccacacca-atactattgatagccacccactcaattttagttacaacctgcaatgcatgtgttcaaaacacaaaccaaggacttcaat--tttcctgtggc--tactcagtcctggccacagtatttgctttt---------------------------------------------ccccaaa--ggcaaacactgctgagactgctccactgcccggccggaggagagaactcaccatcattctagatgcaccagcatgaaactgcttgccaaaata-cagggcaattgttgatttctgaggtt-tgcttatgtcctgagatgaattcctaccactgaggtttcccttactgctcaggagaggatcttgactgccaagtgccaggtggcataggggtgccaattgcttacttctcaGTATCCAACCCCAGCTTT i micMur3.chrUn_NW_017968520v1 I 1 I 1043 s proCoq1.NW_012140747v1 1888553 496 + 4188776 AAAATTGAAAAAGGTTTTGATGTATCAAGTTTCTGAGCAAAC-GACAG----C-----AAACTAAACAAAACCAGGAAGAGAAAATTGTG-AACTGTAATGGCCAACTCTGacttctttaggcaaccacacca-gtactactgacagccacccatttaattttagatacaacctgtaatgcatgtgttcaaaatataaaaccaggacttcaat--tttcctgtgga--tgctcaatctcagccacagtatttgttttt---------------------------------------------ccccaaa--ggcaaacactgctgagactgctccactgcctggctggagcagagaactcaccatcattctagatgcaccagcacgaaactgctttccaaaatg-cagggcagttgtcgatttctgaggtt-tgctaatgtcctgagatgaattcctaccgctcaggtttcccttactgctcaggagaggagcttgactgccaagtgccaggtggcataggagtgccaactgcttacttctcaGTACCCAACCCCAGCTT- i proCoq1.NW_012140747v1 I 1 C 0 s otoGar3.GL873602 8635641 492 + 8790067 AATATCTAAAATGGTTTTGATGTATCAAGTTGCTAAGCAAAC-AACAG----C-----AAACACAACAAAAGCAGGAGGAGAAAACTGTG-AGTTGTAATGGCCAACTGTAACTCTCCTATGTAACCG---CA-GTACTACTGGTGGCTACCTGCTTGATTTCAGATCCAACCTGTAATGCACGTGTTCAGAATACAAAACAAGGATGTCCAG--TTCCCTGTGGC--CATCCAGCCACTGCCATGGCCCTTGTTTTT----------------------------------------------CCCAAA--GGCAAACACTGCTGAGACTGCCCCACTGCCTGGTTGGAGCGCAGCACTCACCATCCTTCTAAATGCACCAGCATGAAACTGCTTTTGCAAACA-CTGGGCAGTTGTTGATTTCTGAGGTT-TGCTAACGTCCTGAGATGAACTTCCACTGCTGAGGTTTCCC-TACTGCTCAGGGGAGGAGCTTGACTGCCAAGTGCCAGGTGGCATTGGAGTGCCAACTATTTGCCTCTCAGCACTCAATCCCTGTTTT i otoGar3.GL873602 I 1 C 0 s mm10.chr5 76436827 454 + 151834684 CAAAGCTGAACTATTTTCAATG-ATCAAGTTTCTAAGCAAAC-AACA-----------AAAC------AAGCCAGAAAGTGACCACTGGA-AACTG----GCCC-CCTGT--CTTTC------------AGCA-GGACTTCTGATGAGTCCTGACTCAGTTTCAGGAACAACCCTTAAATAAGGTGTTCAAAATGCAAAAGGAAGGTTTCTTGTATTCCCAGTGGCTACACTCAAAGTCTATCACAGTCCTTGGTACC---------------------------------------------CACTAAA--GGCAAACATGGCTGAAACTCCTCTGTGGCCTGGCCAGCACAGAGCACCTGCCATAAC---AGACACACCTCCATGAAACTACTTTGCAAAACG-CA-GAGTGCTGTTGACATCTGAGGCT-TGCCGATGTCCTCTGACTAAC---------------TTCACTCACTGCTTAAGAGAGGAGTTTGGCTGCCAAGTCCCAGGTGACATGGGAGTGCCAGCAGCTTTCTTTTCAGTAGCCAGCCCTGCCTTT i mm10.chr5 I 8 C 0 s canFam3.chr13 48020969 500 + 63241923 AAAACCTGAAATGGTTTTGATGTGCCAAGTTCCTGAGCA----AACAA----C-----AAACAAAAC-AAACCAGTGAGAGAAAACTG-A-AATTGTATTGCAC-ACTAAAACTTCCTTAGGCAACCACACCAGGTACCACTG-----------CTCCATTTGAGGTCCAACCTGTAATGCATGTGCTCAGAAGGCAAAAGGAAGACTTCCAA--GATTCCTTGGT--GACTCAGTCTCTGTCACAGTATTTGTTTTCTCCAAATAGTGAACACTGCTGGAACCACTCCACTGCTGGGCTAGACCACCAAATAGTGAACACTGCTGGAACCACTCCACTGCTGGGCTAGACCACAGCACCCATCGAGGTACCAGATGCACCAGCATGGAAT---------AATAA-CC-AGCAGTTGTTGACTTCTGAGGCT-TGCTATTGTCCTGAGATGAACTTCC------------------ACTGCTCAGGAGAGCAGCTAGGCTGCCAAGTGCCAGGTGGTGTAGGAGTGCCAACTGCTTACTCCTCAGTACCCAACATCACTTTT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4115830 492 - 5279953 AAAACCAGAAAAGGGTTTGCTACATCAAGTCCCTGAGCAAAC-AACAAGAAGC-----AAGCAAAACAAAATTAGGAAGACAGAACTGTGAAACTGTCACTTCT-ACTGTAAC---CCTAGGCATCTGCACCA-GTCCTGTGGCTAACACCCCATTCAACTTAAGCTACTACCTGCAGAGCATGCGTTAAAAATCCGAAACGAGGACCTCAGC--CTGCCTGTGGC--TGCCCTGTCTC-GCCACAGTACTT-TTTCC---------------------------------------------CCGAAAA--GGCAAACACTTCTGAGACCCCTCCACTGCCTGGCTAGAAAAAAGCACCCACCATGGTGCTAGGTACACCTTGGAAAAAATATTTTCCAAACTGCCA-GGCAGTTATTGAATTCTGAGCCTGGGCTGATGTCCTGAGATGAACTTTCACCGCTGAGGTTTC-TTAACTGTTGAGGAGAG---CCTGGCTGCCAAGTGCCAGGTGGAACAGGAGGGCCACCTGCTGACTTCTCAGTACCCAACCCCACTTT- i dasNov3.JH568349 C 0 C 0 a score=932227.000000 s hg38.chr4_KI270787v1_alt 85060 70 + 111943 TATTATGGAAAATTTTAAAGCATATACAATAGTAAGTAAACGCTTCT-ACCCAC-TATGGAACCAGATAGTA s panTro5.chr4 119652289 70 - 194502333 TATTATGGAAAATTTTAAAGCATATACAATAGTAAGTAAACGCTTCT-ACCCAC-TATGGAACCAGATAGTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121065828 70 - 195804263 TATTATGGAAAATTTTAAAGCATATACAATAGTAAGTAAACGCTTCT-ACCCAC-TATGGAACCAGATAGTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4495195 70 - 17550833 TATTATGGAAAATTTTAAAGCATATACAATAGTAAGTAAACGCTTCT-ACCCAC-TATGGAACCAGATAGTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69364607 70 - 118206036 TATTATGGAAAATTTTTAAGCATATACAATAGTAAGTAAAAGCTTCT-ACCCAC-TATGGAAGCAGATAGTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111576719 70 - 190429646 TATTATGGAAAAATTTTAAGCATATGCAATTGTAAGTAAATGCTTCT-ACCCAC-TATGGAACCAGATAGTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110745904 70 - 189454096 TATTATGGAAAAATTTTAAGCATATGCAATTGTAAGTAAATGCTTCT-ACCCAC-TATGGAACCAGATAGTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13312371 70 + 26754465 TATTATGGAAAAATTTTAAGCATATGCAATTGTAAGTAAATGCTTCT-ACCCAC-TATGGAACCAGATAGTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4213945 70 - 5137665 TATTATGGAAAAATTTTAAGCATATGCAATTGCAAGTAAATGCTTCT-ACCCAC-TATGGAACCAGATAGTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122923311 70 - 135778131 TATTATGGAAAAATTTTAAGCATATACAATTGTAAGTAAATGCTTCT-ACCCAC-TATGGAACCAGATAGTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2035651 70 + 2427316 TATTATGGAAAAATTTTAAGCATATGCAATTGTAAGTAAATGCTTCT-ACCCAC-TATGGAACCAGATAGTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1331222 70 + 1448899 TACTATGGAAAAATTTTAAGCATATACAATTGTAAGTAAATGCTTCT-ACCCAC-TATGGAACCAGATAGTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53039574 70 - 190850796 CATTATGGAAAATTTTTAAGCATATACAATCGTTAGTAAATGCTTCT-ACCCAC-TATGGAACCAGACAGTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8199070 68 - 15139346 CATGATGGAAAATTTTTAAGCATATACAATTATTAGTAAATACTTCT-ACCCAC-TATGGAACCAGACGG-- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6984309 70 - 7304997 CATTATGGAAAATTTTTAAGCATATACAATCGTTAGTAAATGCTTCT-ACCCAC-CATGGAACCAAACAGTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9400788 70 - 11631747 CATTATGGAAAATTTTTAAGCATATACAATCGTTAGTAAATGCTTCT-ACCCGC-TATGGAACCAGACAGTA i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1889049 70 + 4188776 CGTTAGGGAAAACTTCTAGGCATATACAACAATAAGTAAACACTTCT-ACCCAT-GATTGAACCACATAGTA i proCoq1.NW_012140747v1 C 0 I 155 s otoGar3.GL873602 8636133 49 + 8790067 TATAATGGAAAATTTCCAGGCACATAAAA----------------------TAT-GATTGAACCAGAGAGTA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76437281 71 + 151834684 CATTATGGAAAACTTTTAAGTACATACAACAATAAGTAAACATGTCT-GCCTGTACTTGAAACCAGACCGTA i mm10.chr5 C 0 C 0 s canFam3.chr13 48021469 69 + 63241923 TATTATGACAAA-TTTGAGGTATCCACAATAGCAAGTAAACACTCCT-ACCCAC-GATTCAACCAGACAGTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4116322 70 - 5279953 TATTATGG-AAATTTTTAACCAGACACAATAGTAAATAAACCCTTCTCACCCAG-GATTGAACGAGACAATA i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1799002 1043 + 3286835 I a score=553731.000000 s hg38.chr4_KI270787v1_alt 85130 41 + 111943 AGCATAGAGTGTACGAGTCTTTGATTAAGACGGTGAGTCAg s panTro5.chr4 119652359 41 - 194502333 AGCATAGAGTGTACGAGTCTTTGATTAAGACGGTGAGTCAg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121065898 41 - 195804263 AGCATAGAGTGTACGAGTCTTTGATTAAGACGGTGAGTCAg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4495265 41 - 17550833 AGCACAGAGTGTACGAGTCTTTGATTAAGACGGTGAGTCAg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69364677 41 - 118206036 AGCATAGAGTGTACGAGTCTTTGATTAAGACGGTGAGTCAg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111576789 41 - 190429646 AGCACAGAGTGTACGAGTCTTTGATTAAGACAGTGAGTCAg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110745974 41 - 189454096 AGCACAGAGTGTACGAGTCTTTGATTAAGACAGTGAGTCAg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13312441 41 + 26754465 AGCACAGAGTGTACGAGTCTTTGATTAAGACAGTGAGTCAg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4214015 41 - 5137665 AGCACAGAGTGTACGAGTCTTTGATTAAGACAGTGAGTCAg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122923381 41 - 135778131 AGCACAGAGCGTATGAGTCTTTGATTAAGACAGTGAGTCAg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2035721 41 + 2427316 AGCACAGAGTGTATGAGTCTTTGATTAAGACAGTGAGTCAg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1331292 41 + 1448899 AGCACAGAGTGTACGAGTCTTTGATTTAGACAGTGAGTCAg i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53039644 39 - 190850796 AGCACAGAGTGTACGAGTC--TGATTAAGACAGTGAGTCAg i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8199138 39 - 15139346 AGCACAGAGTGTATGAGTC--GGATTAAGACAGTGAGTCAg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6984379 39 - 7304997 AGCACAGAGTGTACGAGTC--TGATTAAGACAGTGAGTCAg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9400858 39 - 11631747 AGCACGGAGTGTACGAGTC--TGACTAAGATAGTAAGTCAg i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8636182 41 + 8790067 GGCACAGCATTCATGGGTCTATGATTAAAATGGTGAGTTAG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76437352 41 + 151834684 AGTACATAGTGTGCAAGTCTGTGACTAAGACGGTGAGTCAG i mm10.chr5 C 0 I 53 s canFam3.chr13 48021538 41 + 63241923 AGCTCTGAGTGCACAAGTCTGTGATTAAGATAGTGAGTCAG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4116392 40 - 5279953 AGCATAAAGTGAGTGAGTCTGTCAGTGAAACAG-GAGTCAG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1889119 155 + 4188776 I e micMur3.chrUn_NW_017968520v1 1799002 1043 + 3286835 I a score=17100.000000 s hg38.chr4_KI270787v1_alt 85171 1 + 111943 g s panTro5.chr4 119652400 1 - 194502333 g i panTro5.chr4 C 0 C 0 s panPan2.chr4 121065939 1 - 195804263 g i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4495306 1 - 17550833 g i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69364718 1 - 118206036 g i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111576830 1 - 190429646 g i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110746015 1 - 189454096 g i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13312482 1 + 26754465 g i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4214056 1 - 5137665 g i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122923422 1 - 135778131 g i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2035762 1 + 2427316 g i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1331333 1 + 1448899 g i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53039683 1 - 190850796 g i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8199177 1 - 15139346 g i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6984418 1 - 7304997 g i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9400897 1 - 11631747 g i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8636223 1 + 8790067 g i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48021579 1 + 63241923 G i canFam3.chr13 C 0 I 43 s dasNov3.JH568349 4116432 1 - 5279953 G i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1889119 155 + 4188776 I e micMur3.chrUn_NW_017968520v1 1799002 1043 + 3286835 I e mm10.chr5 76437393 53 + 151834684 I a score=1301139.000000 s hg38.chr4_KI270787v1_alt 85172 118 + 111943 gccagg-----tggctcaggcctgtaataccagcactttgggaggccaaagtgggcagatcccttgagcccagaggttcaagaccagcctgggcaacatggtgaaaccccatctctacaaaaa s panTro5.chr4 119652401 118 - 194502333 gcaagg-----tggctcgggcctgtaataccagcactttgggaggccaaagtgggcagatcccttgagcccagaggttcaagaccagcctgggcaacatggtgaaaccccatctctacaaaaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121065940 118 - 195804263 gccagg-----tggctcgggcctgtaataccagcactttgggaggccaaagtgggcagatcccttgagcccagaggttcaagaccagcctaggcaacatggtgaaaccccatctctacaaaaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4495307 118 - 17550833 gccagg-----tggctcaggcctgtaataccagcactttgggaggccgaagtgggcagatcccttgagcccagaggttcaagaccagcctgggcaacatggtgaaaccccatctctacaaaaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69364719 118 - 118206036 gccagg-----tggctcaggcctgtaataccagcactttgggaggccaaagtgggcagatcccttgagtccaggggttcaagaccagcctgggcaacgtggcgaaaccccatctctacaaaaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111576831 118 - 190429646 gccagg-----tggctcaggcctgtaataccagcactttgggaggccaaagtgggcaaattccttgagcccaggggttcaagaccagcctaggtaacatggtgaaaccccatctctacaaaaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110746016 118 - 189454096 gccagg-----tggctcaggcctgtaataccagcactttgggaggccaaagtgggcaaattccttgagcccaggggttcaagaccagcctaggtaacatggtgaaaccccatctctacaaaaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13312483 118 + 26754465 gccagg-----tggctcaggcctgtaataccagcactttgggaggccaaagtgggcaaattccttgagcccaggggttcaagaccagcctaggtaacatggtgaaaccccatctctacaaaaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4214057 118 - 5137665 gccagg-----tggctcaggcctgtaataccagcactttgggaggccaaagtgggcaaattccttgagcccaggggttcaagaccagcctaggtaacatggtgaaaccccatctctacaaaaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122923423 118 - 135778131 gccagg-----tggctcaggcctgtaataccagcactttgggaggccaaagtgggcaaatcccttgagtccaggggttcaagaccagcctaggtaacatggtgaaaccccatctctacaaaaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2035763 118 + 2427316 gccagg-----tggctcaggcctgtaataccagcactttgggaggccaaagtgggcaaatcccttgagcccaggggttcaagaccagcctaggtaacatggtgaaaccccatctctacaaaaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1331334 118 + 1448899 gccagg-----tggctcaggcctgtaataccagcactttgggaagccaaagtgggcaaatcccttgagcccaggggttcaagaccagcctaggtaacatggtgaaaccccatctctacaaaaa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53039684 117 - 190850796 gccagg------ggctcaggcctgtaataccagcactttgggaggctgaagtgggcagatcctttgagcccaggggttcaagataagcctgagtaacacggtgaaactctgtctctataaaaa i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8199178 118 - 15139346 gccagg-----tggctcggtcctgtaataccagcactttgggaggctgaagtgggcagatcctttgagcccaggggttcaagatcagcctgggtaacacagtgaaactccatctctacaaaaa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6984419 118 - 7304997 gccagg-----tggctccggccggtaataccagcactttgggaggctgaagtgcgcagatcttttgagcccaggggttcaagatcagcctgggtaacacggtgaaactgcatctctacaacaa i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9400898 118 - 11631747 gccagg-----tggctcgggcctgtaataccagcactttgggaggctgaagtgggcagatcctttgagcccaggggctcaagatcagtctgggtaacacagtgaaactccatctctacaaaaa i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8636224 120 + 8790067 gctgggtgtagtggctcactcctgtgatcccagcactctgggagactgagggaggtagataac-tgagcacaggagtttaagatcagcctgaacaaga--gtgagatcccatctctactaaaa i otoGar3.GL873602 C 0 C 0 e proCoq1.NW_012140747v1 1889119 155 + 4188776 I e micMur3.chrUn_NW_017968520v1 1799002 1043 + 3286835 I e mm10.chr5 76437393 53 + 151834684 I e dasNov3.JH568349 4116433 0 - 5279953 C e canFam3.chr13 48021580 43 + 63241923 I a score=2096768.000000 s hg38.chr4_KI270787v1_alt 85290 239 + 111943 atacaaaaattagtcgattgtagtggcatgcgcctgtagtcccagctacttgggaggctgaggtgggaggatcgcttgagtgtgggagatacaggctgcagtgagccgtgactgtgccactgcacttcagccagggtgttagagtgagaccttgtctcaaTtaa------aataata-ataataataata------------TGGTGAATCAGGCTACAATCCTAGGTTTGCAC-AGTGTTCTAGTGGCATATTTGTCA s panTro5.chr4 119652519 250 - 194502333 atacaaaaattagtcgattgtagtggcatgggcctgtagtcgcagctactctggaggctgaggtgggaggatcgcttgagtgtgg-agatacaggctgcagtgagccgtgactgtgccactgcacttcagccagggtgttagagtgagaccttgtctcaaTTAA------aataata-ataataataataataataataataCGGTGAATCAGGCTACAATCCTAGGTTTGCAC-AGTATTCTAGTGGCATATTTGTCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121066058 244 - 195804263 atacaaaaattagtcgattgtagtggcatgggcctgtagtcgcagctactctggaggctgaggtgggaggatcgcttgagtgtgg-agatacaggctgcagtgagccgtgactgtgccactgcacttcagccagggtgttagagtgagaccttgtctcaaTtaa------aataata-ttaataataata------ataataCGGTGAATCAGGCTACAATCCTAGGTTTGCCC-AGTATTCTAGTGGCATATTTGTCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4495425 242 - 17550833 atacaaaaattagtcgattgtagtggcatgcgcctgtagtcccagctagtcgggaggctgaggtgggaggatcgcttgagtgtgggagatacaggctgcagtgagccgtgactgtgccactgcacttcagccagggtgttagagtgagaccttgtctcaaTtaa------aataata-ataataataata---------ataCAGTGAATCAGGCTACAATCCTAGGTTTGCAC-AGTGTTCTAGTGGCATATTTGTCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69364837 242 - 118206036 atacaaaaattagtcgattgtagtggcatgtgtctgtaatcccagctacttgggaggctgaggtgggaggatcacttgagtgtgggagatacaggctgcagtgagccgtgactgtgccactgcacttcagcctgggtgttagagtgagaccctgtctcaaTtaa------aataata-ataataataata---------ataCGGTGGATCAGCCTACAATCCTAGGTTTGCAC-AGTGTTCTAGTGGTGTATTTGTCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111576949 242 - 190429646 atacaaaaattagtctattgtagtggcatgtgcctgtagtcccagctacttgggaggctgaggtgggaggatggcttgagtgtgggagatacagcctgcagtgaaccatgactatgccactgcacttcagcctgggtgttagagtgagaccttgtctcaGTTTA------aataata-ataataataata---------ataCGGTGAATCAGGCTACAATCCTAGGTTTGCAC-AGTGTCCTAGTGGTGTATTTGTCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110746134 242 - 189454096 atacaaaaattagtctattgtagtggcatgtgcctgtagtcccagctacttgggaggctgaggtgggaggatggcttgagtgtgggagatacagcctgcagtgaaccatgactatgccactgcacttcagcctgggtgttagagtgagaccttgtctcaGTTTA------aataata-ataataataata---------ataCGGTGAATCAGGCTACAATCCTAGGTTTGCAC-AGTGTCCTAGTGGTGTATTTGTCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13312601 242 + 26754465 atacaaaaattagtctattgtagtggcatgtgcctgtagtcccagctacttgggaggctgaggtgggaggatggcttgagtgtgggagatacagcctgcagtgaaccatgactatgccactgcacttcagcctgggtgttagagtgagaccttgtctcaGTTTA------aataata-ataataataata---------ataCGGTGAATCAGGCTACAATCCTAGGTTTGCAC-AGTGTCCTAGTGGCGTATTTGTCC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4214175 239 - 5137665 atacaaaaattagtctattgtagtggcatgtgcctgcagtcccagctacttgggaggctgaggtgggaggatggcttgagtgtgggagatacagcctgcagtgaaccatgactatgccactgcacttcagcctgggtgttagagtgagaccttgtctcaGTTTA---------aata-ataataataata---------ataCGGTGAATCAGGCTACAATCCTAGGTTTGCAC-AGTGTCCTAGTGGCGTATTTGTCC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122923541 239 - 135778131 atacaaaagttagtctattgtagtggcatgtgcctgtagtcccagctacttgggaggctgaggtgggaggatggcttgagtgtgggagatacagcctgcagtgaaccatgactgtgccattccacttcagcctgggtgttagagtgagaccttgtctcaGTGTA---------aata-ataataataata---------ataTGGTGAATCAGGCTACAATCCTAGGTTTGCAC-AGTGTCCTAGTGGCGTATTTGTCC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2035881 230 + 2427316 atacaaaaattagtctattgtagtggcatgtgcctgtagtcccagctacttgggaggctgaggtgggaggatggcttgagtgtgggagatacagcctgcagtgaaccatgactatgccactgcacttcagcctgggtgttagagtgagaccttgtctcaGTTTAaataataataata-ataataataata---------ataCGGTGAATCAGGCTACAA-------------------TCCTAGTGGCGTATTTGTCC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1331452 236 + 1448899 atacaaaaattagtctattgtagtggcatgtgcctgtagtcccagctacttgggaggctgaggtgggaggatcgcttgagtgtgggagatacagcctgcagtgaaccgtgactgtgccactgcacttcagcctgggtgttagagtgagaccttatctcaaTTTA------------A-ATAATAATAATA---------ATACGGTGAATCAGGCTACAATCCTAGGTTTGCAC-AGTGTCCTAGTGGCGTATTTGTCC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53039801 234 - 190850796 atacaaatattactc-agcatagtagtgtgtgcctgtagtcccagctactcaggaggctgaggtgggaggattgcttgagtgtgagaggtacaggctgcagtgagccatgaccgtgccactgcacttcagcctgggtgtcagagtgagattttgtctc-----a------aaaaaaa-a--aTAATAATA---------ATAAGATGAATCAGGCTATAAATCTAGGTTTGCAC-AGTGTTCTAGTGGTGCATTTGTCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8199296 235 - 15139346 atacaaatattgctc-agcgtagtagtgtgcgcctgtagtcccagctactcgggaggctgaggtgggaggattgcttaagtgtgggaggtacaggctgcagtgagccgtgactgtgccactgcacttcagcctgggtgtgagagtgagatcttgtctca----a------aaaaaaa-a--aaaaaaaaa---------aaaaGATGAATCCGACTATAAATCTAGGTTTGCAC-AGTGTTCTAGTGGCATATTTGTCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6984537 226 - 7304997 atacaaatattactc-agcatagtagtgtgcgcctgtagtcctagctacttgggaggctgaggtgggaggattgcttaagtgtgggaggtacaggctgcagtgagccatgactgttccactgcatgtaagcctgggtgtcagagtgagatcttgtctc-----a------aaaaaga-a----------a---------aTAAGATGAATCAGGCTATAAACCTAGGTTTGCAC-AGTGTTCTAGTGGCGTATTTGTCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9401016 233 - 11631747 atacaaatattactc-agcgtagtagtgtgtgcctgtagtcccagctacttgggaggctgaggcgggaggattgcttgagtgtgggaggtacaggctgcagtgagccatgactgtgccactgcacttcagcctgggtgtcagagtgagatcttgtctc-----a------aaaaata-a--ataaata-a---------aTAAGATGAATCAGGCTATAAAGCTAGGTTTGCAC-AGTGTTCTAGTGGTGTATTTGTCA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8636344 236 + 8790067 atagaaaaactagctaggtctagtggcg-gtgcctgtagtcccagctactcgggaggctgaggcaacaggattgcttgagcctaggagtttgaggttgctgtgacctatgatgacatcacggcactcca----tggtgacagagaaagactctgcaaaaaataa------aacaaaataaaataggaaaa---------aTTAAATG--TCATGCAGAAAAGCTAGGATTGCACAAGTATTCTGGAGCCATA-TTATAG i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4116433 57 - 5279953 CTACAAAGTTTGGTT-------------------TGTA------------TGGTAGAATGCTGTGGGAAGG--GCTACTATATGGTAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1889119 155 + 4188776 I e micMur3.chrUn_NW_017968520v1 1799002 1043 + 3286835 I e mm10.chr5 76437393 53 + 151834684 I e canFam3.chr13 48021580 43 + 63241923 I a score=86568.000000 s hg38.chr4_KI270787v1_alt 85529 9 + 111943 GATGGGC-------CA s panTro5.chr4 119652769 9 - 194502333 GATGGGC-------CA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121066302 9 - 195804263 GATGGGC-------CA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4495667 9 - 17550833 GATGGGC-------CA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69365079 7 - 118206036 GATGGGC--------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111577191 9 - 190429646 GACGGGC-------CA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110746376 9 - 189454096 GACGGGC-------CA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13312843 16 + 26754465 GACGGGCCACTTGGCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4214414 9 - 5137665 GACGGGC-------CA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122923780 9 - 135778131 GACGGGC-------CA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2036111 9 + 2427316 GACGGGC-------CA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1331688 9 + 1448899 GATGGGC-------CA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53040035 9 - 190850796 CATGGGC-------CA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8199531 9 - 15139346 GATAGAC-------AA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6984763 9 - 7304997 GATAGGC-------CA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9401249 9 - 11631747 GATGGGC-------CA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8636580 9 + 8790067 GATGTGC-------CA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48021623 9 + 63241923 GATGGGC-------CA i canFam3.chr13 I 43 C 0 e proCoq1.NW_012140747v1 1889119 155 + 4188776 I e micMur3.chrUn_NW_017968520v1 1799002 1043 + 3286835 I e mm10.chr5 76437393 53 + 151834684 I e dasNov3.JH568349 4116490 0 - 5279953 C a score=453160.000000 s hg38.chr4_KI270787v1_alt 85538 77 + 111943 CTTGGCA------CTTGGCACAAATGAATAAATATACCtt------attttattttattttattttatttatttta---ttttattATCCTG-------- s panTro5.chr4 119652778 72 - 194502333 CTTGGCA------CTTGGCACAAATGAATAAATATACCtt------attttattttattttattttatttatttta---tt-----ATCCTG-------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121066311 72 - 195804263 CTTGGCA------CTTGGCACAAATGAATAAATATACCtt------attttattttattttattttatttatttta---tt-----ATCCTG-------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4495676 72 - 17550833 CTTGGCA------CTTGGCACAAATGAATAAATATACCtt------attttattttattttatttattttatttta---tt-----ATCCTG-------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69365086 72 - 118206036 -----CA------CTTGGCACAAATGAATAAAGATACCtt------attttattttattttattttattttattta---ttttaGTATCCTA-------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111577200 83 - 190429646 CTTGGCA------CTTGGCACAAGTGAATAAAGACACGTTTTTTAAattttattttatttattttattttatttta---ttttattATCCTG-------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110746385 83 - 189454096 CTTGGCA------CTTGGCACAAGTGAATAAAGACACGTTTTTTAAattttattttatttattttattttatttta---ttttattATCCTG-------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13312859 82 + 26754465 CTTGGCA------CTTGGCACAAGTGAATAAAGACATGTTTTTTAAattttattttattta-tttattttatttta---ttttattATCCTG-------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4214423 82 - 5137665 CTTGGCA------CTTGGCACAAGTGAATAAAGACACGttttttaaattttattttattta-tttatttaatttta---ttttattATCCTG-------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122923789 86 - 135778131 CTTGGCA------CTTGGCACAAGTGAATAAAGGTACGTTTTTTAAatttaattttatttattttattttattttattttTTTATTATCCTG-------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2036120 82 + 2427316 CTTGGCA------CTTGGCACAAGTGAATAAAGACACGTTTTTTAAattttattttattta-tttattttatttta---ttttattATCCTG-------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1331697 82 + 1448899 CTTGGCA------CTTGGCACAAGTGAATAAAGACACGtttttttaatttaattttattta-tttattttatttta---ttttattATCCTA-------- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53040044 54 - 190850796 CTATACAGTAGGTCTTGGCACAAATGAATAAAGATACCCTT--------------------------------------TTTTATTATCCTG-------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8199540 54 - 15139346 CTATGCAGTAGGTCTTGGCACAAATGAATAAAGATACCTTT--------------------------------------TTTTATTTTCCTG-------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6984772 54 - 7304997 CTATACAGTAGGTCTTGGCACAAATGAATAAAGATACCTTT--------------------------------------TTTTATTTTCCTG-------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9401258 54 - 11631747 CTATACAGTAGGTCTTGGCACAAATGAATAAAGATACCTTT--------------------------------------TTTTATTATCCTG-------- i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8636589 51 + 8790067 CCATACAGCAAGTCTTGGCACAAATGAATAGAG--ACCAT---------------------------------------TTTTATTGTCCTG-------- i otoGar3.GL873602 C 0 I 8 s mm10.chr5 76437446 40 + 151834684 -------------CTTGGCACAGATGAATCAAGACACCTT---------------------------------------TTGTGTTAGCCTG-------- i mm10.chr5 I 53 I 8 s canFam3.chr13 48021632 54 + 63241923 CTGTACAGTAAATCTTGGCACAAATGAATAAATAGCCCTTT--------------------------------------TTTTATTATCCTG-------- i canFam3.chr13 C 0 I 8 s dasNov3.JH568349 4116490 49 - 5279953 -------------CTGGACACAAATGAAAGAAGAAGCCTGT--------------------------------------TTTAATTATTCCAAGAGTCAA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1889119 155 + 4188776 I e micMur3.chrUn_NW_017968520v1 1799002 1043 + 3286835 I a score=1717223.000000 s hg38.chr4_KI270787v1_alt 85615 131 + 111943 GAAGTCTCACAACC---------ATTTCTCCAAGCTTGCCGGTGTAATCTTTTGGAACTTTATGGGGAGGCCTATAGCTTTCATTGCATCACTCACTGGGAATAACTTAACAGacagaaaatcatagtggttacaagtag s panTro5.chr4 119652850 131 - 194502333 GAAGTCTCACAACC---------ATTTCTCCAAGCTTGCCGGTGTAATCTTTTGGAACTTTATGGGGAGGCCTATAGCTTTCATTGCATCACTCGCTGGGAATAACTTAACAGacagaaaatcatagtggttacaagtag i panTro5.chr4 C 0 C 0 s panPan2.chr4 121066383 131 - 195804263 GAAGTCTCACAACC---------ATTTCTCCAAGCTTGCCGGTGTAATCTTTCGGAACTTTATGGGGAGGCCTATAGCTTTCATTGCATCACTCGCTGGGAATAACTTAACAGacagaaaatcatagtggttacaagtag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4495748 131 - 17550833 GAAGTCTCACAACC---------ATTTCTCCAAGCTTGCCGATGTAATCTTTTGGAACTTTATGGGGAGGCCTATAGCTTTCATTGCATCACTCGCTGGGAATAACTTAACAGacagaaaatcatagtggttacaagtag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69365158 131 - 118206036 GAAGTCTCACAACC---------ATTCCTCCAAGCTTGCCAGTGAAATCTTTTGGAACTTTATGGGGAGGCCTACAGCTTTCATTGCATCACTCGCTGGGAATAACTTCAGAGacaggaaatcgtagtggttacgagtag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111577283 131 - 190429646 GAAGTCTCACAACC---------ATTTCTCCAAGCTTGCCAGTGTCATCTTTTGGAACTTTATGGGGCGGTCTATAGTTTTCATTGCATCGCTTGCTGGGAGTAACTTAACAGacaggaaaccatagtagttatgagtag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110746468 131 - 189454096 GAAGTCTCACAACC---------ATTTCTCCAAGCTTGCCAGTGTCATCTTTTGGAACTTTATGGGGCGGTCTATAGTTTTCATTGCATCGCTTGCTGGGAGTAACTTAACAGacaggaaaccatagtagttatgagtag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13312941 131 + 26754465 GAAGTCTCACAACC---------ATTTCTCCAAGCTTGCCAGTGTCATCTTTTGGAACTTTATGGGGCGGTCTATAGTTTTCATTGCATCGCTTGCTGGGAGTAACTTAACAGacaggaaaccatagtagttatgagtag i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4214505 131 - 5137665 CAAGTCTCACAACC---------ATTTCTCCAAGCTTGCCAGTGTCATCTTTTGGAACTTTATGGGGCGGTCTATAGTTTTCATTGCATCGCTTGCTGGGAGTAACTTAACAGacaggaaaccatagtagttatgagtag i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122923875 127 - 135778131 GAAGTCTCACAACC---------ATTTCTCCAAGCTTGCCAGTGTCATCTTTAGGAACTTTATGGGGCGGTCTATAGTTTTCATTGCATCGCTCGCTGGGAGTAACTT----Gacaggaaaccacagtagttatgagtag i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2036202 131 + 2427316 CAAGTCTCACAACC---------ATTTCTCCAAGCTTGCCAGTGTCATCTTTTGGAACTTTATGGGGCGGTCTATAGTTTTCATTGCATCGCTTGCTGGGAGTAACTTAACAGacaggaaaccatagtagttatgagtag i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1331779 131 + 1448899 GAAGTCTCACAACC---------ATTTCTCCAAGCCTGCCAGTGTAATCTTTTGGAACTTTATGGGGCAGTCTATAGCTTTCGTTGCATCACTCACTGGGAGTAACTTAAGAGATAGGAAACcatagtagttacgagtag i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53040098 129 - 190850796 GATGTCT--CAGCC---------ATTTCTCCAAGCTTGCCAGTGTAATCTTTTGGAACTCTGTGGGGATGCCTAGAGCTTTCATTGCATCACTCACTGAGAATAACTTAACAGacaggaaaccatagtggttaggagtag i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8199594 131 - 15139346 GATGTCTCACAGCC---------ATTTCTCCAAGCTTTCCAGTGTAATCTTTTGGAACTCTATGGGGATGCCTATTGCTTTCATTGCATCACTCACTGAGAATAACTTAACAGacaggaaaccatagtggttaggagtag i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6984826 130 - 7304997 GATGTCTCACAGCC---------ATTTCTCCAAGCTTGCCAGTGT-ATCTTTTGGAACTCTATGGGGACGCCTATAGCTTTCATTGCATCACTCGCTGAGAATAACTTAACAGacaggaaaccatagcggttaggagtag i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9401312 131 - 11631747 GATATCTCCCAGCC---------ATTTCTCCAAGCTTGCCAGTGTAATCTTTTGGAACTCTATGGGGATGCCTATAGCTTTCATTGCATCACTCGCTGAGAATAACTTAACAGacaggaaaccatagcggttaggagtag i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1889274 130 + 4188776 gaagtttcacaacc---------atctctCTAAGCTTACCAGTGCAATCTTCTGGAACTCTACGTGAAGGCCTATATCTTTCATTGTGTCACTCACAGGGAATAACTTAACATAC-GGAAACcatagtagttaggagtag i proCoq1.NW_012140747v1 I 155 I 17 s otoGar3.GL873602 8636648 118 + 8790067 GAAGTTTCACAACC---------ATCTCTCCAAACTTGCCAGTGCAATGTTTTAGAACTTTATGAGAAAATCTATAACTTTTACTGTGTCCCTCACTGAGAATTACTTAACAGACAGGAAACCATAg------------- i otoGar3.GL873602 I 8 C 0 s mm10.chr5 76437494 126 + 151834684 GAGGTTTCACAGTTGGCCTGCTGGCTACATCCAGCTGGTCA-TATGGTACGTTGGAACTTTGTGGGGAGAT-------GTTCATGGAATTATCCCGTGGGAATAACCCAGTGGGCAGGAAACCACAG---TTAAGGG--- i mm10.chr5 I 8 C 0 s canFam3.chr13 48021694 128 + 63241923 GAAGTTTCACAACT---------ATCTCTCCATGCTTGCCAGTACAATCTTTTGGAACTCTATG-GGAGGCCTCTGCCTTTCCTTACATGGCTCTGTGAGAATTAA-CAGCAGGcaggaaaccatggtagttaggagtc- i canFam3.chr13 I 8 C 0 s dasNov3.JH568349 4116539 120 - 5279953 GAAGTCTCACAACT---------ATCTTTCTAAGTTTCCTAGAACAAACTTTCAGGACTTTATGGGTAGGCCTCTACCTTTAATTGCATCATGCATTGGGAATAACTT-----------AGCCATTACagcaaggagtgg i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1799002 1043 + 3286835 I a score=296133.000000 s hg38.chr4_KI270787v1_alt 85746 37 + 111943 aagcttt-------ggtcaggtactctgggtgtaccctgggtga s panTro5.chr4 119652981 37 - 194502333 aagcttt-------ggtcaggtactctgggtgtatcctgggtga i panTro5.chr4 C 0 C 0 s panPan2.chr4 121066514 37 - 195804263 aagcttt-------ggtcaggtactctgggtgtatcctgggtga i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4495879 37 - 17550833 aagcttt-------ggtcaggtactctgggtgtaccctgggtga i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69365289 26 - 118206036 aa------------------gtactctgggtatactctgggtga i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111577414 37 - 190429646 aagcttt-------ggtcaggtactctggatgtactctgggtga i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110746599 37 - 189454096 aagcttt-------ggtcaggtactctggatgtactctgggtga i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13313072 37 + 26754465 aagcttt-------ggtcaggtactctggatgtactctgggtga i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4214636 37 - 5137665 aagcttt-------ggtcaggtactctggatgtactctgggtga i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122924002 37 - 135778131 aagcttt-------ggtcagctactctggatgtactctgggtga i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2036333 37 + 2427316 aagcttt-------ggtcaggtactctggatgtactctgggtga i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1331910 37 + 1448899 aagcttt-------ggtcaggtactctggatgtactctgggtga i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53040227 28 - 190850796 aatcttt-------ggtcaggtactctggat---------gtga i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8199725 28 - 15139346 aatcttt-------ggtcaggtattctggat---------gtga i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6984956 28 - 7304997 aatcttt-------ggtcaggtattctggat---------gtga i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9401443 28 - 11631747 aatctct-------ggtccggtattctggat---------gtga i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8636766 26 + 8790067 --gactt-------aggaagaaactctgagt---------gtca i otoGar3.GL873602 C 0 I 1 s mm10.chr5 76437620 28 + 151834684 TGGTTTG-------AGTTCGGTGCTATGGGG---------GTGA i mm10.chr5 C 0 C 0 s canFam3.chr13 48021822 35 + 63241923 aggttttagggtagggtcaggaactctgggt---------gtga i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4116659 30 - 5279953 acatttt-----aggattaagttctctgggc---------atga i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1889404 17 + 4188776 I e micMur3.chrUn_NW_017968520v1 1799002 1043 + 3286835 I a score=2131335.000000 s hg38.chr4_KI270787v1_alt 85783 153 + 111943 gtcccagttccactacttattaatcttgtgaaccttgaacaatttgttttaacatc-tcttagcttccttt-ccttcatctatgaaaggtaaaaag-aaaagtagctaatagggttattgagagaattaaatgagataatacaagtaaaa----t-actta s panTro5.chr4 119653018 153 - 194502333 gtcccagttccactacttattaatcttgtgaaccttgaacaatttgttttaacatc-tcttagcttccttt-ccttcatctatgaaaggtaaaaag-aaaagtagctaatagggttattgagagaattaaatgagataatacaagcaaaa----t-actta i panTro5.chr4 C 0 C 0 s panPan2.chr4 121066551 153 - 195804263 gtcccagttccactacttattaatcttgtgaaccttgaacaatttgttttaacatc-tcttagcttccttt-ccttcatctatgaaaggtaaaaag-aaaagtagctaatagggttattgagagaattaaatgagataatacaagtaaaa----t-actta i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4495916 153 - 17550833 gtcccagttccactacttattaatcttgtgaaccttgaacaatttgttttaacatc-tcctagcttccttt-ccttcatctatgaaaggtaaaaag-aaaagtagctaatagggttattgagagaattaaatgagataatacaagtaaaa----t-actta i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69365315 153 - 118206036 gtcccagttccactgcttattaatcttgtgaaccttgaacaatttgttttaacatc-tcttagtttccttt-ccttcatctatgaaaggtaaaaag-aaaagtagctaatagggttattgagagaattaaatgagataatacaagtaaaa----t-actta i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111577451 153 - 190429646 gtcccagttccaccacttattaatcttgtgaaccttgtacaatttgttttaacatc-tcttagcttccttt-ccttcatctatgaaagataaaaag-aaaagtagctaatagggttattgagagaattaaatgagataatgcaagtaaaa----t-actta i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110746636 153 - 189454096 gtcccagttccaccacttattaatcttgtgaaccttgtacaatttgttttaacatc-tcttagcttccttt-ccttcatctatgaaagataaaaag-aaaagtagctaatagggttattgagagaattaaatgagataatgcaagtaaaa----t-actta i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13313109 153 + 26754465 gtcccagttccaccacttattaatcttgtgaaccttgtacaatttgttttaacatc-tcttagcttccttt-ccttcatctatgaaagataaaaag-aaaagtagctaatagggttattgagagaattaaatgagataatgcaagtaaaa----t-actta i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4214673 153 - 5137665 gtcccagttccaccacttattaatcttgtgaaccttgtgcaatttgttttaacatc-tcttagcttccttt-ccttcatctatgaaagataaaaag-aaaagtagctaatagggttactgagagaattaaatgagataatacaagtaaaa----t-actta i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122924039 152 - 135778131 gtcccagttccaccacttattaatcttgtgaaccttgtacaatttg-tttaacatc-tcttagcttccttt-ccttcatctatgaaagataaaaag-aaaagtagctaatagggttattgagagaattaaatgagataatacaagtaaaa----t-actta i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2036370 153 + 2427316 gtcccagttccaccacttattaatcttgtgaaccttgtacaatttgttttaacatc-tcttagcttccttt-ccttcatctatgaaagataaaaag-aaaagtagctaatagggttactgagagaattaaatgagataatacaagtaaaa----t-actta i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1331947 152 + 1448899 gtcccagttctaccacttattaatcttgtgaa-cttgtacaatttgctttaacatc-tcttagcttccttt-ccttcatctgtgaaaggtaaaaac-aaaagtagctaatacggttattgagagaattaaatgagataatacaagtaaaa----t-actta i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53040255 153 - 190850796 gtcccagttccactgcttattgatcttgggaaccttgaacaacttcttttaacatc-tcttagcttccttt-ccttcatctatgaaaggtaaaaag-aaaagtcactaatagggttattgcaagaattaaatgagataatacaagcaaaa----t-attta i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8199753 153 - 15139346 gtcccagttccaccgctaattgatcttgggaaccttgaacaactcgttttaacatc-tcttagcttccttt-ccttcatctatgaaaggtaaaaag-aaaagtagctaatagggttattgagagaattaaatgagataatacaagcaaaa----t-actta i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6984984 157 - 7304997 gtcccagtttcaccgcttattgatcttgggaaccttgaacaacttgttttaacatc-tcttagattccttt-ctttcgtctatgaaaggtaaaaag-aaaagtagctaatagggttattgagagaattaagtgagataatacaagcaaaacacgt-actta i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9401471 153 - 11631747 gtcccagttccaccgcttattgatcttgggaaccttgaacaacttgttttaacatc-tcttagcttccttt-ccttcgtctatgaaaggtaaaagg-aaaagtagctaatagggttattgtgagaattaaatgagataatacaagcaaaa----t-actta i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1889421 151 + 4188776 gtcccagttccagtgcttattagtgttg-gaatcttgaacaacttg-tttaacatc-tcttagctttcttt-ccttaatctataaaagggaaaagg-aatgatagctaatagggttattgtgagaattaaatgagataatacaagtaaaa----t-actta i proCoq1.NW_012140747v1 I 17 I 201 s otoGar3.GL873602 8636793 152 + 8790067 agccctgtccctctgtgtgatagtgctg-ggattttgaacaactta-tttaacatc-tcatagctttcttt-ccttaatctatgaaaagggaaaag-aataatagataataggcttattgtgagaattaaatgagataatgtaagtaaaa----taactta i otoGar3.GL873602 I 1 C 0 s mm10.chr5 76437648 137 + 151834684 GTCCCAGTTGTCTAGTTTAGTGGTCTTA-GGACTTTGGACAACTTA-AATCACATC-TCTTAGTATGTTCTGCATTCATTTGTGCCAGGGAGA---------TAGCTAACAGGATT--TGCAAGGATT-----ATAAAACGCAAGTAAAG----C-CCTCA i mm10.chr5 C 0 I 4 s canFam3.chr13 48021857 150 + 63241923 gagccagttctactg-ttattagtcttg-gtccctggaatatcttg-cttaatatc-ttttagatttcttt-cttcaatctatgaagggggaataa-aataatagctaatggagttattatgaaaattaaatgaaataccacaaggaaaa----t-actta i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4116689 141 - 5279953 atcccagtgctactgctcactagtctcg-ggaccttg-------------aatatcatcttagctttcctc-ctctaatctgtgaatgggaaaaagcagtagcagctcataaagttgttgtgagaatgaaaagagataaggcaggtagga----t-acttt i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1799002 1043 + 3286835 I a score=77142.000000 s hg38.chr4_KI270787v1_alt 85936 6 + 111943 gaacaa s panTro5.chr4 119653171 6 - 194502333 gaacaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121066704 6 - 195804263 gaacaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4496069 6 - 17550833 gaacaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69365468 6 - 118206036 gaacaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111577604 6 - 190429646 gaacaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110746789 6 - 189454096 gaacaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13313262 6 + 26754465 gaacaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4214826 6 - 5137665 gaacaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122924191 6 - 135778131 gaagaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2036523 6 + 2427316 gaacaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1332099 6 + 1448899 gagcaa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53040408 6 - 190850796 gaacaa i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8199906 6 - 15139346 gaacaa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6985141 6 - 7304997 gaacaA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9401624 6 - 11631747 gaacaA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8636945 6 + 8790067 acacaa i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76437789 6 + 151834684 CAGCAC i mm10.chr5 I 4 C 0 s canFam3.chr13 48022007 6 + 63241923 gtacaA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4116830 6 - 5279953 gcacaa i dasNov3.JH568349 C 0 I 385 e proCoq1.NW_012140747v1 1889572 201 + 4188776 I e micMur3.chrUn_NW_017968520v1 1799002 1043 + 3286835 I a score=594082.000000 s hg38.chr4_KI270787v1_alt 85942 73 + 111943 -tgcagtttgg--------------------------------------------------------------------------------------------------------cttttttaaaataagtgttccataaatgGCAGTGGTGGAT-ACTGTGAGTTACAGCTGTGTTCA s panTro5.chr4 119653177 73 - 194502333 -tgcagtttgg--------------------------------------------------------------------------------------------------------ttttttttaaataagtgttccataaatgGCAGTGGTGGAT-ACTGTGAGTTACAGCTGTGTTCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121066710 73 - 195804263 -tgcagtttgg--------------------------------------------------------------------------------------------------------tttttttaaaataagtgttccataaatgGCAGTGGTGGAT-ACTGTGAGTTACAGCTGTGTTCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4496075 73 - 17550833 -tgcagtttgg--------------------------------------------------------------------------------------------------------tttttttaaaataagtgttccataaatgGCAGTGGTGGAT-ACTGTGAGTTACAGCTGTGTTCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69365474 73 - 118206036 -cccagtttgt--------------------------------------------------------------------------------------------------------ttttttttaaatgagtgttccataaatggcagTGGTGGAT-ACTGTGAGCTACAGCTGTGTTCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111577610 73 - 190429646 -ctcagtttgg--------------------------------------------------------------------------------------------------------tttttttaaaataagagttccataaatgGCAGTGGTGGAT-ACTATGAGTTACAGCTGTGTTCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110746795 73 - 189454096 -ctcagtttgg--------------------------------------------------------------------------------------------------------tttttttaaaataagagttccataaatgGCAGTGGTGGAT-ACTATGAGTTACAGCTGTGTTCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13313268 73 + 26754465 -ctcagtttgg--------------------------------------------------------------------------------------------------------tttttttaaaataagagttccataaatgGCAGTGGTGGAT-ACTATGAGTTACAGCTGTGTTCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4214832 73 - 5137665 -ctcagtttgg--------------------------------------------------------------------------------------------------------tttttttaaaataagagttccataaatgGCAGTGGTGGAT-ACTATGAGTTACAGCTGTGTTCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122924197 74 - 135778131 -ctcagtttgg-------------------------------------------------------------------------------------------------------ttttttttaaaataagagttccataaatgGCAGTGGTGGAT-ACTAGGAGTTACAGCTGTGTTCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2036529 73 + 2427316 -ctcagtttgg--------------------------------------------------------------------------------------------------------tttttttaaaataagagttccataaatgGCAGTGGTGGAT-ACTATGAGTTACAGCTGTGTTCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1332105 73 + 1448899 -cccagttagg--------------------------------------------------------------------------------------------------------tttttttaaaataagagttccataaatggcagTGGTGGAT-ACTGTGAGTTACAGCTGTGTTCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53040414 64 - 190850796 -ccca--------------------------------------------------------------------------------------------------------------ttttttaaaa---aatgttctataaatgGCAGTGGTGGAC-ACTGTGAGTTACAGCTGCATTCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8199912 51 - 15139346 -ccca--------------------------------------------------------------------------------------------------------------ttttttttaa---agtgttctataaatgGCAGTGGTGGAC-ACTGTG-------------TTCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6985147 71 - 7304997 -CCCAGTTGTT-------------------------------------------------------------------------------------------------------TTTTTTTTTTA---AGTGTTCTATAAATGGCGCTGGTAAAC-ACTGTGAATTACAGCTGTGTTTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9401630 71 - 11631747 -CCCAGTTTTT-------------------------------------------------------------------------------------------------------TTTTTCTTTGA---AGTGTTCTATAAATGGCAGTGGTGGAC-ACTGTGAGTTACAGCTGTGTTCA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8636951 175 + 8790067 gcccagttttttgtttgattttagttttatagaaatggggtcttacagtatttcccaggctggcgcctccaacttctggtctcaaaggaccctcccaccctagccgcctaTGCATTTTTTTTTGA---AGAGTTCAATAAATGGTAGGGTTTGGC-ACTGTGAGTTACAGTTGTGATAG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76437795 55 + 151834684 -CGCCACTT----------------------------------------------------------------------------------------------------------TTCATTTTAA---AGTCTTCAATAAAT--CATAAGTGGGTCACACTGAGTCA------------ i mm10.chr5 C 0 C 0 s canFam3.chr13 48022013 82 + 63241923 -ATCTATTTTG-----------------------------------------------------------------------------------------------CTTTTTTCTTTTTTTTAAAAAAGGGATTCAGTAAATGGTAGAGTTTGAT-ATTGTGAGTGACAACAGCATTGG i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1889572 201 + 4188776 I e micMur3.chrUn_NW_017968520v1 1799002 1043 + 3286835 I e dasNov3.JH568349 4116836 385 - 5279953 I a score=289737.000000 s hg38.chr4_KI270787v1_alt 86015 23 + 111943 TTCCTATAAT-CTTTTCCTACTTG s panTro5.chr4 119653250 23 - 194502333 TTCCTATAAT-CTTTTCCTACTTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121066783 23 - 195804263 TTCCTATAAT-CTTTTCCTACTTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4496148 23 - 17550833 TTCCTATAAT-CTTTTCCTACTTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69365547 23 - 118206036 TTCCTATAAT-GTTTTCCTACTTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111577683 23 - 190429646 TTTCTATAAT-CTTTTCCTACTTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110746868 23 - 189454096 TTTCTATAAT-CTTTTCCTACTTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13313341 23 + 26754465 TTTCTATAAT-CTTTTCCTACTTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4214905 23 - 5137665 TTTCTATAAT-CTTTTCCTACTTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122924271 23 - 135778131 TTTCTATAAT-CTTTTCCTACTTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2036602 23 + 2427316 TTTCTATAAT-CTTTTCCTACTTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1332178 23 + 1448899 TTTCTATAAT-CTTTTCCTACTTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53040478 22 - 190850796 CTCCTATAAT-CTTTTCCTACTT- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8199963 22 - 15139346 TTCCTATAAT-ATTTTCCTACTT- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6985218 22 - 7304997 TTCCTACAAT-CTTTTCCTACTT- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9401701 22 - 11631747 TTCCTATAAT-CTTTTCCTACTT- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1800045 23 + 3286835 TTCCCATAAT-CTTCTCCCACTTG i micMur3.chrUn_NW_017968520v1 I 1043 C 0 s proCoq1.NW_012140747v1 1889773 23 + 4188776 TTCCCATAAT-CTTCTCCCACTTG i proCoq1.NW_012140747v1 I 201 C 0 s otoGar3.GL873602 8637126 23 + 8790067 TTCTTGTAAT-CTTCTCCCACTTG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76437850 16 + 151834684 TGACCACGAG-TTCCGC------- i mm10.chr5 C 0 C 0 s canFam3.chr13 48022095 24 + 63241923 TTCCTCTAATGCCTATCTTGCTTA i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4116836 385 - 5279953 I a score=280133.000000 s hg38.chr4_KI270787v1_alt 86038 26 + 111943 GTCTTGGTTTTATTA--------AAGGCCTCCGC------------------ s panTro5.chr4 119653273 26 - 194502333 GTCTTGGTTTTATTA--------AAGGCCTCCGC------------------ i panTro5.chr4 C 0 C 0 s panPan2.chr4 121066806 26 - 195804263 GTCTTGGTTTTATTA--------AAGGCCTCCAC------------------ i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4496171 26 - 17550833 GTCTTGGTTTTATTA--------AAGGCCTCCGC------------------ i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69365570 26 - 118206036 GTCTCGGTTTTATTA--------AAGGCCTCCGC------------------ i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111577706 26 - 190429646 GTCTTGGTTTTATTA--------AAGGCCTCCAC------------------ i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110746891 26 - 189454096 GTCTTGGTTTTATTA--------AAGGCCTCCAC------------------ i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13313364 26 + 26754465 GTCTTGGTTTTATTA--------AAGGCCTCCAC------------------ i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4214928 26 - 5137665 GTCTTGGTTTTATTA--------AAGGCCTCCAC------------------ i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122924294 26 - 135778131 GTCTTGGTTTTATTA--------AAGGCCTCCAC------------------ i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2036625 26 + 2427316 GTCTTGGTTTTATTA--------AAGGCCTCCAC------------------ i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1332201 26 + 1448899 GTCTTGGTTTTATTA--------AAGGCCTCCAC------------------ i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53040500 21 - 190850796 -----GGTTTTATTA--------AAGGCCTCTGC------------------ i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8199985 21 - 15139346 -----GGTTTTATTA--------AAGGCCTCTGC------------------ i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6985240 11 - 7304997 -----GGTTTTATTA--------A---------------------------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9401723 21 - 11631747 -----GGTTTTATTA--------AAGGCCTCTGC------------------ i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1800068 26 + 3286835 GTCTTAGTTCTATCG--------AAAGCCTCTTC------------------ i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1889796 26 + 4188776 GTCTCGGTTCTATCG--------AAGGCCTCTTC------------------ i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8637149 26 + 8790067 GTGTCAGTTTTATTG--------AAGGCCTGTGC------------------ i otoGar3.GL873602 C 0 I 15 s mm10.chr5 76437866 25 + 151834684 -TCCCGGTCCTGCTG--------AGGGCCTCCTA------------------ i mm10.chr5 C 0 C 0 s canFam3.chr13 48022119 11 + 63241923 G-----------CTG--------ATGGCCT---------------------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4117221 52 - 5279953 GTTTCAGTTGTGTTAGTTCCTCTAATGCTTCCGGCCTTGGTCCTGACTCTTT i dasNov3.JH568349 I 385 C 0 a score=2213510.000000 s hg38.chr4_KI270787v1_alt 86064 159 + 111943 CCTAGCAGC-CG-TTCCCTGGG-----------------------GTCCCATGGTGTCTCATGACCATAGCCACTTCACAT---ACATTTCTCGCTGTAATGTTCAAAGAGCCTACAGATGGCTGAG-TGAGTTGTATAATCAAAGTAGCTCTGATGTCAGGGGATGGTGAAGTCACTCTGGCCTGAA s panTro5.chr4 119653299 159 - 194502333 CCTAGCAGC-CG-TTCCCTGGG-----------------------GTCCCATGGTGTCTCATGACCATAGCCACTTCACTT---ACATTTCTCGCCGTAATGTTCAAAGAGCCTACAGatggctgag-tgagttgtataatcaaagtagctctgatgtcagaggatggtgaagtcactctggcctgaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121066832 159 - 195804263 CCTAGCAGC-CG-TTCCCTGGG-----------------------GTCCCATGGTGTCTCATGACCATAGCCACTTCACTT---ACATTTCTCGCCGTAATGTTCAAAGAGCCTACAGatggctgag-tgagttgtataatcaaagtagctctgatgtcagaggatggtgaagtcactctggcctgaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4496197 159 - 17550833 CCTAGCAGC-CG-TTCCCTGGG-----------------------GTCCCATGGTGTCTCATGACCATAGCCACTTCACTT---ACATTTCTCGCTGTAATGTTCAAAGAGCCTACAGACGGCTGAG-TGAGTTGTATAATCAAAGTAGCTCTGATGTCAGGGGATGGTGAAGTCACTCTGGCCTGAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69365596 159 - 118206036 CCTAGCAGC-CA-TTCCCTGGG-----------------------GTCCCATAGTGTCTCATGACCATAGCCACTTCACTT---ACATTTCTCGCTGTAACATTCAAAGAGCCTACAGATGGCTGAG-TGAGTTGTATAATCAAAGTAGCTCTGATGTCAGGGGATGGTGAAGTCACTCTGGCCTGAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111577732 159 - 190429646 CCTAGCAGC-CA-TTCCCTGGG-----------------------GTCCCATGGTGTCTCATGACCATAGCCACTTCACTT---ACATTTCTCGCTGTAATATTCAAAGAGCCTACAGatgactgag-tgagttgtataatcaaagtagctctgatgtcaggggatggtgaagtcactctggcctgaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110746917 159 - 189454096 CCTAGCAGC-CA-TTCCCTGGG-----------------------GTCCCATGGTGTCTCATGACCATAGCCACTTCACTT---ACATTTCTCGCTGTAATATTCAAAGAGCCTACAGATGACTGAG-TGAGTTGTATAATCAAAGTAGCTCTGATGTCAGGGGATGGTGAAGTCACTCTGGCCTGAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13313390 159 + 26754465 CCTAGCAGC-CA-TTCCCTGGG-----------------------GTCCCATGGTGTCTCATGACCATAGCCACTTCACTT---ACATTTCTCGCTGTAATATTCAAAGAGCCTACAGatgactgag-tgagttgtataatcaaagtagctctgatgtcaggggatggtgaagtcactctggcctgaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4214954 159 - 5137665 CCTAGCAGC-CA-TTCCCTGGG-----------------------GTCCCATGGTGTCTCATGACCATAGCCACTTCACTT---ACATTTCTCGCTGTAATATTCAAAGAGCCTACAGatgactgag-tgagttgtataatcaaagtagctctgatgtcaggggatggtgaagtcactctggcctgaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122924320 159 - 135778131 CCTAGCAGC-CA-TTCCCTGGG-----------------------GTCCCATGGTGTCTCACGACCATAGCCACTTCACTT---ACATTTCTCGCTGTAATATTCAAAGAGCCTACAGATGACTGAG-TGAGTTGTATAATCAAAGTAGCTCTGATGTCAGGGGATGGTGAAGTCACTCTGGCCTGAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2036651 158 + 2427316 CCTGGCAGC-CA-TTCCCTGGG-----------------------GTCCCATGGTGTCTCATGACCATAGCCACTTCACTT---ACATTTCTCGCTGTAATATTC-AAGAGCCTACAGATGACTGAG-TGAGTTGTATAATCAAAGCAGCTCTGATGTCAGGGGATGGTGAAGTCACTCTGGCCTGAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1332227 159 + 1448899 CCTAGCAGC-CA-TTCCCTGGA-----------------------GTCCCATGGTATCTCATGACCATAGCCACTTCACTT---ACATTTCTCGCTGTAATATTCAAAGAGCCTACAGATGGCTGAG-TGAGTTGTATAATCAAAGTAGCTCTGATGTCAGGGGATGGTGAAGTCACTCTGGCCTGAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53040521 169 - 190850796 TGTAGCAGC-CA-TTCCCGGGGTGGGGAGCGG-------------GTCCTATAGTGTCTCATGACAATAGCCACCTCACTT---ACATTTCTTGCTCTAATATTCAAAGAGCCTATAGATGGCTGTG-TGAGTTGTATAATCAAAGTAGCTCTGATTTCAGAGGATGGTAAAGTCACTCTGGCCTGAA i calJac3.chr3 C 0 I 2 s saiBol1.JH378162 8200006 182 - 15139346 TGTAGCAGC-CA-TTcccggggtggcgggcgggggcgggggggcAGTCCCATGGTGTCTCATGACAATAGCCACCTCACTT---ACATTTCTCACTCTAAAATTCAAAAAGCCTATAGATGGCTGAG-TGAGTTGTATAATCAAAGTAGCTCTGATTTCAGAGGATGGTAAAGTCACTCTGGCCTGAA i saiBol1.JH378162 C 0 I 2 s cebCap1.NW_016107439v1 6985251 139 - 7304997 ---------------------------------------------GGCCCATGGTGTCTCATGACAATTGCCACCTCACTT---ACATTTCTCACTCTAAAATTCAAAGAGCCTATAGatggctgag-tgagttgtataatcaaagtagctctgatttcagaggatggtaatgtcactctggactgaa i cebCap1.NW_016107439v1 C 0 I 2 s aotNan1.NW_018493494v1 9401744 167 - 11631747 TGTAGCAGC-CA-TTCCCGGGGTTGGGGGC---------------GTCCCATGGTGTCTCATGACAATAGCCACCTCACTT---ACATTTCTCATTCTAAAATTCAAAAAGCCTATAGatggctgag-tgagttgtataatcaaagtagctctgatttcagaggatggtaaagtcactctggcctgaa i aotNan1.NW_018493494v1 C 0 I 2 s micMur3.chrUn_NW_017968520v1 1800094 152 + 3286835 CCTGGCAGC-CA-ATTGCCTGG-----------------------GTCCCATGGTGCCTCACGGCCATAGCCACCTCTCTT---ACATTTCCTGCTCTAATATTCTAAG-------AGatggctaaa-tgagttgtataatcaaaacagcattgaagtcagaggatgctgaagtcacgctggcctgaa i micMur3.chrUn_NW_017968520v1 C 0 I 2 s proCoq1.NW_012140747v1 1889822 159 + 4188776 CCCGGCAGC-CA-GTTCCCTGA-----------------------GAACCATGATGCCTCACGACCATAGCCACCTCTCTT---ACATTTCCTGCTCTAATATTCTAAGAGTCTACAGatggctaaa-tgagttgtataatcaaaacagctctgaagttagaggatggtgaagtcactctggcctgaa i proCoq1.NW_012140747v1 C 0 I 115 s mm10.chr5 76437891 146 + 151834684 CCCGGAAGC-C-----CCTTGG-----------------------GTCCCACTGTGTCTCATGA------CCACCTCACTT---AGACGCCCTCTTCTAATATTCT--GAGTCTGTGGGTGGTGGTGTTGAGCTGTATAATCAAACCTACCATGATGT-AGTGTGTGGTGAAGCCGCTTGGGTTTGA- i mm10.chr5 C 0 I 12 s canFam3.chr13 48022130 159 + 63241923 CTTTGCAGC-CAGCTCCCTGGA-----------------------GTGCCCTAGTGCCTCATGGCCACAGCCACCTTCTCT---ACGTTCCCAGCTATAATATTCTAGGAGTCTATGAGTGGCCAAG-CTAGTTATACAATGAAAGCAGCTCTAAAGTCAGAAGACCCTGAAGTCACT-TCACCTGAA i canFam3.chr13 C 0 I 4 s dasNov3.JH568349 4117273 160 - 5279953 CCTGGCACCACC-TCCTCTGGA-----------------------GTGCCATGGTGCCTCATGGCCATAGCCATGTCATTTATGATATTTCCTGATCTAATATTCTAGG-GTCTACTAATGGTCAAA-CAAGTTGTATAATCAAAGCAGCTCTGAAGTCA--AGATGGTGAGTTCACTCTGGGCTGAA i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8637175 15 + 8790067 I a score=802016.000000 s hg38.chr4_KI270787v1_alt 86223 78 + 111943 ----TATAT-GG-AACGCTTGGTG---CAGGAGATGAAACTTttaaagttaatttaat---------ttaa---tttaattatattttaCCCCAATCCC s panTro5.chr4 119653458 78 - 194502333 ----tatat-gg-aacgcttggtg---caggagatgaaacttttaaagttaatttaat---------ttaa---tttaattatattttaCCCCAATCCC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121066991 78 - 195804263 ----tatat-gg-aacgcttggtg---caggagatgaaacttttaaagttaatttaat---------ttaa---tttaattatattttaCCCCAATCCC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4496356 78 - 17550833 ----TATAT-GG-AACGCTTGGTG---CAGGAGATGAAACTTttaaagttaatttaat---------ttaa---tttaattatattttaCCCCAATCCC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69365755 78 - 118206036 ----TATAT-GG-AAGGCTTGGTG---CAGGAGATGAAACTTttaaagttaatttaat---------ttaa---tttaattatattttaCCCCAATCCC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111577891 73 - 190429646 ----tatat-gg-aaggcttgatg---caggagatgaaacttttaaag-----ttaat---------ttaa---tttaattgtattttaCCCCAATCCC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110747076 73 - 189454096 ----TATAT-GG-AAGGCTTGATG---CAGGAGATGAAACTTttaaag-----ttaat---------ttaa---tttaattgtattttaCCCCAATCCC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13313549 73 + 26754465 ----tatat-gg-aaggcttgatg---caggagatgaaacttttaaag-----ttaat---------ttaa---tttaattgtattttaCCCCAATCCC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4215113 68 - 5137665 ----tatat-gg-aaagcttgatg---caggagatgaaacttT----------TTAAT---------TTAA---TTTAATTGTATTTTACCCCAATCCC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122924479 73 - 135778131 ----TATAT-GG-AAGGCTTGATG---CAGGAGATGAAACTTttaaag-----ttaat---------ttaa---tttaattgtattttaCCCCAATCCC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2036809 73 + 2427316 ----TATAT-GG-AAAGCTTGATG---CAGGAGATGAAACTTttaaag-----ttaat---------ttaa---tttaattgtattttaCCCCAATCCC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1332386 68 + 1448899 ----TATAT-GG-AAGGTTTGGTA---CAAGAGATTAAACTTTTAAAG-----TTAAT---------TTAA---TTT-----TATTTTACCCCAATCCC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53040692 73 - 190850796 ----TGTAT-GG-AAGGCTTGGTG---CAAGAGATGAAACTTTTAAAG-----TTAAC---------TTAA---TTTATTTACATTTTATCCCAATCCC i calJac3.chr3 I 2 C 0 s saiBol1.JH378162 8200190 73 - 15139346 ----TGTAT-GG-AAGGCTTGGTG---CAAGAGATGAAACTTTTAAAG-----TTAAC---------TTAA---TTTATTTACATTTTATCCCAATCCC i saiBol1.JH378162 I 2 C 0 s cebCap1.NW_016107439v1 6985392 83 - 7304997 ----tgtat-gg-aaggcttggtg---caaaagTT--AACTTTTAAAG-----TTAACTTTTTAAAGTTAACTTTTTATTTACATTTTATCCCAATCCC i cebCap1.NW_016107439v1 I 2 C 0 s aotNan1.NW_018493494v1 9401913 68 - 11631747 ----tgtat-gg-aaggcttggtg---caagagatgaaacttTTAAAG-------------------TTAA---CTTATTTACATTTTATCCCAATCCC i aotNan1.NW_018493494v1 I 2 C 0 s micMur3.chrUn_NW_017968520v1 1800248 77 + 3286835 ----catacaag-aaggcttggac---caggagatggaatttTTAAAG-----TGAATTGT------TCAa---tttgtttatatcttaccccaatccc i micMur3.chrUn_NW_017968520v1 I 2 C 0 s mm10.chr5 76438049 70 + 151834684 ----CATAT-GTCAGGGCTTGTTGTGACAGGATCCAAAACTTTCAAAA--------AG---------TTAA---TTTA----TGTCTTCCCTACATCCT i mm10.chr5 I 12 C 0 s canFam3.chr13 48022293 71 + 63241923 ----CATGT-G--AAGGCTTGGAG---CATGAAATGCGACTTCTAGAT-----TTAA----------TAAA---TTAATTTATAGCTTATCCCAATCCC i canFam3.chr13 I 4 I 454 s dasNov3.JH568349 4117433 79 - 5279953 GTGAAGTGT-GG-AA-GTTTGGTG---CAGGAGGTGGGACTCGTAAAGTTA--TTTAT---------TTAG---TTTATTGATATCTTACCCCAACCAT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1889981 115 + 4188776 I e otoGar3.GL873602 8637175 15 + 8790067 I a score=1137445.000000 s hg38.chr4_KI270787v1_alt 86301 99 + 111943 TAGTATTTGTTGGA---TTC-ATTAAAAATACACATAATAC-AATGGTGAAAA-TAAACAGGTTA--GAGT--CAGAGAGAGGGGAGAATACAGACAGGGAAATAGAAA s panTro5.chr4 119653536 99 - 194502333 TAGTATTTGTTGGA---TTC-ATTAAAAATACACATAATAC-AATGGTGAAAA-TAAACAGGTTA--GAGT--CAGAGAGAGGGGAGAATACAGACAGGGAAATAGAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121067069 99 - 195804263 TAGTATTTGTTGGA---TTC-ATTAAAAATACACATAATAC-AATGGTGAAAA-TAAACAGGTTA--GAGT--CAGAGAGAGGGGAGAATACAGACAGGGAAATAGAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4496434 99 - 17550833 TAGTATTTGTTGGA---TTC-ATTAAAAATACACATAATAC-AATGGTGAAAA-TAAACAGGTTA--GAGT--CAGAGAGAGGGGAGAATACAGACAGGGAAATAGAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69365833 98 - 118206036 TAGTATTTGTTGGA---TTC-ATTAAAAATACACATAATAC-AATGGTGAAAA--AAACAGGTTA--GAGT--CAGAGAGAGGGGAGAATACAGATAGGAAAATAGAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111577964 101 - 190429646 TAGTATTTGTTGGA---TTC-ATTAAAAATACACATAATAC-AATGGGGAAAA-TAAACAGTTTa--gagtgagagagagaggggagaatacagatagggaaatagaaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110747149 101 - 189454096 TAGTATTTGTTGGA---TTC-ATTAAAAATACACATAATAC-AATGGGGAAAA-TAAACAGTTTa--gagtgagagagagaggggagaatacagatagggaaatagaaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13313622 101 + 26754465 TAGTATTTGTTGGA---TTC-ATTAAAAATACACATAATAC-AATGGGGAAAA-TAAACAGTTTa--gagtgagagagagaggggagaatacagatagggaaatagaaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4215181 99 - 5137665 TAGTATTTGTTGGA---TTC-ATTAAAAATACACATAATAC-AATGGGGAAAA-TAAACAGTTTA--GAGT--GAGAGAGAGGGGAGAATACAGATAGGGAAATAGAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122924552 99 - 135778131 TAGTATTTGTTGGA---TTC-ATTAAAAATACACATAATAC-AATGGGGAAAA-TAAACAGTTTA--GAGT--GAGAGAGAGGGGAGAATATAGATAGGGAAATAGAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2036882 99 + 2427316 TAGTATTTGTTGGA---TTC-ATTAAAAATACACATAATAC-AATGGGGAAAA-TAAACAGTTTA--GAGT--GAGAGAGAGGGGAGAATACAGATAGGGAAATAGAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1332454 99 + 1448899 TAGTATATGTTGGA---TTC-ATTAAAAATACACATAATAC-AATGGGGAAAA-TAAACAGTTTA--GAGT--CAGAAAGAGGGGAGACTACAGATAGGGAAATAGAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53040765 99 - 190850796 TACTATTTGTTGGA---TTC-ATTAAAAATGCACCTGATAC-AATGGTGAAAA-TAAACAGATTA--GAGT--CAGAGAGAGGGGAGAATACAGACACGGAAATAGAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8200263 99 - 15139346 TAGTATTTGTTGGA---TTC-ATTAAAAATGCGCCTCATAC-AATGGTGAAAA-TAAACAGGTTA--GAAT--CAGAGAGAGCAGAGAATACAGACAGGGAAATAGAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6985475 95 - 7304997 TAGTATTTGTTGGA---TTC-ATTAGAAATGCACCTCATAC-AATGGCGAAAA-TAAACAGGTTA--------CAGAGAGAGGGGAGAATACAGACAGGGAAATAGAAA i cebCap1.NW_016107439v1 C 0 I 1527 s aotNan1.NW_018493494v1 9401981 99 - 11631747 TAGTATTTGTTGGA---TTC-ATTAAAAATGCACCTCATAC-AATGGTGAAAA-TAAACAGGTTA--GAGT--CAGAGAGAGGGGAGAATACAGACAGGGAAATAGAAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1800325 100 + 3286835 aaatatttgtggga---tttaaaaaaaaatacacataatac-actggtgaaaa-taagtaggtgagggagt--cagagggaggaaagaagac--acagggaaatagaaa i micMur3.chrUn_NW_017968520v1 C 0 C 0 s mm10.chr5 76438119 81 + 151834684 AGATATTCATGGGA---TTT-CAAAAAGAT----------------GTGGGAC-TGATTTTTTTT-----T--AAGATATGCAATAGAATACAGAGAGGGAAATAGAAA i mm10.chr5 C 0 I 3 s canFam3.chr13 48022818 87 + 63241923 TATTATTTGGTGGG---ATT-TTTTTTAATGCATATAAT-C-AATGGAGAAAAATAAACAG------------CTGAGGGAAGAGAGATTACAGA----GAAATAGCAG i canFam3.chr13 I 454 C 0 s dasNov3.JH568349 4117512 105 - 5279953 CAACGTCTAAGGAAGTTTTT-GCTAAAAATGCATGTGATACAAATGGTTCAAA-TAAATTGCTAAGGGAGT--CAGAAGGAAGGAGGAATATGAATAGGGAAATAGAAA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1889981 115 + 4188776 I e otoGar3.GL873602 8637175 15 + 8790067 I a score=653640.000000 s hg38.chr4_KI270787v1_alt 86400 51 + 111943 GCTAGCTATAG-TATTTCACCAAACTGTGTCCCAGGAAATCTTA----GGCTTGAT s panTro5.chr4 119653635 51 - 194502333 GCTAGCTATAG-TATTTCACCAAATTGTGTCCCAGGAAATCTTA----GGCTTGAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121067168 51 - 195804263 GCTAGCTATAG-TATTTCACCAAATTGTGTCCCAGGAAATCTTA----GGCTTGAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4496533 51 - 17550833 GCTAGCTATAG-TATTTCACGAAATTGTGTCCCAGGAAATCTTA----GGCTTGAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69365931 51 - 118206036 GCTAGCTATAC-TACTTCACCAAATTGTGTCCCAGGCAATCTAA----GGCTTGAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111578065 51 - 190429646 gCTAGCTACAG-TATTTCACTGAATTGTGTCCCAGGCAATCTTG----GGCTTGAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110747250 51 - 189454096 gCTAGCTACAG-TATTTCACTGAATTGTGTCCCAGGCAATCTTG----GGCTTGAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13313723 51 + 26754465 gCTAGCTACAG-TATTTCACTGAATTGTGTCCCAGGCAATCTTG----GGCTTGAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4215280 51 - 5137665 GCTAGCTACAG-TATTTCACTGAATTGTGTCCCAGGCAATCTTG----GGCTTGAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122924651 51 - 135778131 GCTAGCTACAG-TATTTCACTGAATTGTGTCCCAGGCAATCTTG----GGCTTGAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2036981 51 + 2427316 GCTAGCTACAG-TATTTCACTGAATTGTGTCCCAGGCAATCTTG----GGCTTGAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1332553 51 + 1448899 GCTAGCTACAG-TATTTCACTGAATTGTGTCCCAGGCAATCTTG----GGCTTGAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53040864 55 - 190850796 GCTAGCTATAG-TATTTCACCAAATTGTGTCCCAGGCAATCTTGGGCTGGCTTGAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8200362 56 - 15139346 GCTAGCTATAATTATTTCACCAAATTGTGTCCCAGGCAATCTTCGGCTGgcttgat i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6987097 55 - 7304997 gcTAGCCATAG-TATTTCACCAAATTGTGTCCCTGGCAATCTTGGGCTGgcttgat i cebCap1.NW_016107439v1 I 1527 C 0 s aotNan1.NW_018493494v1 9402080 55 - 11631747 GCTAGCCATCG-TATTTCACCAAATTGTGTCCCAGGCAATCTTGGGCTGgcttgat i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1800425 51 + 3286835 gctggctataa-tatttcatcaaatcacatcccaggcaatcttt----ggctagat i micMur3.chrUn_NW_017968520v1 C 0 C 0 s mm10.chr5 76438203 51 + 151834684 TTTACTGATAT-AATTTTACCAAATCATCTCCCAGGCAACCTTG----GGATGGAT i mm10.chr5 I 3 I 120 s canFam3.chr13 48022905 51 + 63241923 GCTGGCTATAT-AATTTTACCTAATCATGTCCCAGACAATCCTG----GGCTAGAT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4117617 44 - 5279953 -------GGAT-TATTTCACTGGATTGTGTCCTAAACAATCTTG----GGCTGGAT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1889981 115 + 4188776 I e otoGar3.GL873602 8637175 15 + 8790067 I a score=1819369.000000 s hg38.chr4_KI270787v1_alt 86451 146 + 111943 GTGTGCAAA-------TCAGGAC-------------------------------------------------GTAAATATCCTCTTACCAAAGCAAAGAAGGAAAATATA--ATCAATTGCAAAACTCATATATGTCAATATATATCT--Catatgcca---ggcactgttgtaaacatttcatctatactagc-----------tcacttaatggtcac s panTro5.chr4 119653686 146 - 194502333 GTGTGCAAA-------TCAGGAT-------------------------------------------------GTAAATATCCTCTTACCAAAGCAAAGAAGGAAAATATA--ATCAACTGCAAAACTCATATATGTCAATATATATCT--Catatgcca---ggcactgttgtaaacatttcatctatactagc-----------tcacttaatggtcac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121067219 146 - 195804263 GTGTGCAAA-------TCAGGAT-------------------------------------------------GTAAATATCCTCTTACCAAAGCAAAGAAGGAAAATATA--ATCAACTGCAAAACTCATATATGTCAATATATATCT--Catatgcca---ggcactgttgtaaacatttcatctatactagc-----------tcacttaatggtcac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4496584 146 - 17550833 GTGTGCAAA-------TCAGGAC-------------------------------------------------GTAAATATCCTCTTACCAAAGCAAAGAAGGAAAATATA--ATCAATTGCAAAACTCATATATGTCAATATATATCT--Catatgcca---ggcactgttgtaaacatttcatctatactagc-----------tcacttaatggtcac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69365982 142 - 118206036 GTGCGCAAA-------TCAGGAT-------------------------------------------------GTAAATGTCCTCTTACCAAAGCAAAGAAGGAAAATATA--ATCAATTGCAAAACTCGTATATGTCAATATATATCT--CGtatgcca---ggcactgttgtaaacatttcatctgtattag---------------cttaatggtcac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111578116 146 - 190429646 GTGCACAAA-------TCAGGAT-------------------------------------------------ATAAATGTCCTCTTACCAAAGCAAAGAAGGAAAATATA--ATCAATTGCAAAACTCATATATGTCAATATATATCT--Catatgcca---ggctctgttgtaaacatttcatctgtattagc-----------tcacttaatggtcac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110747301 146 - 189454096 GTGCACAAA-------TCAGGAT-------------------------------------------------ATAAATGTCCTCTTACCAAAGCAAAGAAGGAAAATATA--ATCAATTGCAAAACTCATATATGTCAATATATATCT--Catatgcca---ggctctgttgtaaacatttcatctgtattagc-----------tcacttaatggtcac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13313774 146 + 26754465 GTGCACAAA-------TCAGGAT-------------------------------------------------ATAAATGTCCTCTTACCAAAGCAAAGAAGGAAAATATA--ATCAATTGCAAAACTCATATATGTCAATATATATCT--Catatgcca---ggctctgttgtaaacatttcatctgtattagc-----------tcacttaatggtcac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4215331 146 - 5137665 GTGCACAAA-------TCAGGAT-------------------------------------------------ATAAATGTCCTCTTACCAAAGCAAAGAAAGAAAATATA--ATCAATTGCAAAACTCATATATGTCAATATATATCT--Catatgcca---ggctctgttgtaaacatttcatctgtattagc-----------tcacttaatggtcac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122924702 146 - 135778131 GTGCACAAA-------TCAGGAT-------------------------------------------------ATAAATGTCCTCTTACCAAAGCAAAGAAGGAAAATATA--ATCAATTGCAAAACTCATATATATCAATATATATCT--tatatgcca---ggctctgttgtaaacatttcatctgtattagc-----------tcacttaatggtcac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2037032 157 + 2427316 GTGCACAAA-------TCAGGAT-------------------------------------------------ATAAATGTCCTCTTACCAAAGCAAAGAAGGAAAATATA--ATCAATTGCAAAACTCATATATGTCAACATATATCT--Catatgcca---ggctctgttgtaaacatttcatctgtattggtcactgttatggtcacttaatggtcac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1332604 146 + 1448899 GTGCACAAA-------TCAGGAT-------------------------------------------------ATAAATGTCCTCTTACCAAAGCAAAGAAGGAAAATATA--ATCAATTGCAAAACTCATATATGTCAATATATATCT--Catatgcca---ggctctgttgtaaacatttcatctgtattagc-----------tcacttaatggtcac i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53040919 145 - 190850796 GTGGGCAAA-------TCAGGTT-------------------------------------------------GTAAATGTCCTCTTACCAAAGCAAAGAAGGAAAATATA--ATCAATTTGAAAACTCATATATGTCCATATACATCT--CACAtgcca---gg-actgttctaaacacttcatctgtattagc-----------tcacttagcggtcac i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8200418 145 - 15139346 gtgggcaaa-------tcaggtt-------------------------------------------------gtaaatgtcctcttaccaaagcaaagaaggaaaatata--atcaattgcaaaactcatatatgtccataTACATCT--CACAtggca---gg-actgttctaaacacttcatctgtattagc-----------tcacttattggtcac i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6987152 145 - 7304997 gtgggcaaa-------ttaggtt-------------------------------------------------gtaaatgtcctcttatcaaagcaaagaaggaaaatata--atcaattgcaaaactcatatatgtccataTACATCT--CACAtgcca---ag-actgttctaaacaattcatctgtattagc-----------tcacttattggtcac i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9402135 145 - 11631747 gtgggcaaa-------tcaggtt-------------------------------------------------gtaaatgtcctctcaccaaagcaaagaaggaaaatata--atcaattgcaaaacttatatatgtccataTACATCT--CACAtgcca---gg-actgttctaaacacttcatctgtattagc-----------tcacttactggtcac i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1800476 146 + 3286835 gtgggaaaa-------tctggtt-------------------------------------------------aaaaatatcctgttatcaaagcaaagaaggataacatg--atcagttgcaaaattcaTGTATGCCAATATATGTCA--tatatgcca---ggcactcttctaagtattttatctgtattaac-----------tcacttaatggtcac i micMur3.chrUn_NW_017968520v1 C 0 C 0 s mm10.chr5 76438374 201 + 151834684 gtctacaaagtgagttccaggacagccagggctacacagagaaatcctgtctcaaaaagccaaaaTAAATAAATAAATGTCCTGTTAGCAATGGGAAAAAGGAACAAATG--ACCA-TTATAGCATCCATGTGTGCCAGCGTATGTCT--tgtatggca---ggtactgttacaagcattttatctgtatcagt-----------tcacttgatggtcac i mm10.chr5 I 120 C 0 s canFam3.chr13 48022956 132 + 63241923 ATGGGCAAA-------TC---TT-------------------------------------------------ATAAATATCCTGTTGCCAAAACAAAGAAGGAAAATATG--ATCAACAGCAAAATTCATATATGTCAat-------------atgcta---gccactgtgctaagcatttgatatatatgaac-----------tcacttaatgatcac i canFam3.chr13 C 0 I 228 s dasNov3.JH568349 4117661 140 - 5279953 GTGGGCAAA-------TATGACT-------------------------------------------------------------TTACCAAAGCAAAGAAGGAAAAAATATTGTAAGTTGCAAAATTCATAAATGCCAAGGTATgcctactgtattccattgggtatgtttccaagtattgtacatgtattgat-----------tcatttaatggtta- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1889981 115 + 4188776 I e otoGar3.GL873602 8637175 15 + 8790067 I a score=102992.000000 s hg38.chr4_KI270787v1_alt 86597 8 + 111943 tgttaaca- s panTro5.chr4 119653832 8 - 194502333 tgttaaca- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121067365 8 - 195804263 tgttaaca- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4496730 8 - 17550833 tgttaaca- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69366124 8 - 118206036 tgttaaca- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111578262 8 - 190429646 tgttaaca- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110747447 8 - 189454096 tgttaaca- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13313920 8 + 26754465 tgttaaca- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4215477 8 - 5137665 tgttaaca- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122924848 8 - 135778131 tgttaaca- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2037189 8 + 2427316 tgttaaca- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1332750 8 + 1448899 tgttaaca- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53041064 8 - 190850796 tgttaaca- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8200563 8 - 15139346 tgttaaca- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6987297 8 - 7304997 tgttaaca- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9402280 8 - 11631747 tgttaaca- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1800622 8 + 3286835 tgttaaca- i micMur3.chrUn_NW_017968520v1 C 0 I 1 s mm10.chr5 76438575 8 + 151834684 tgtcagcc- i mm10.chr5 C 0 I 4 s dasNov3.JH568349 4117801 5 - 5279953 ----aacaa i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1889981 115 + 4188776 I e otoGar3.GL873602 8637175 15 + 8790067 I e canFam3.chr13 48023088 228 + 63241923 I a score=938820.000000 s hg38.chr4_KI270787v1_alt 86605 72 + 111943 ctctat---caattggtg---ttgtttttgctgtttttatggatgggaaactgaggctcag-aaggtgaaataagtggc s panTro5.chr4 119653840 72 - 194502333 ctctat---caattggtg---ttgtttttgctgtttttatggatgggaaactgaggctcag-aaggtgaaataagtggc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121067373 72 - 195804263 ctctat---caattggtg---ttgtttttgctgtttttatggatgggaaactgaggctcag-aaggtgaaataagtggc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4496738 72 - 17550833 ctctat---caattggtg---ttgtttttgctgtttttatggatgggaaactgaggctcag-aaggtgaaataagtggc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69366132 72 - 118206036 ctctat---caatttgtg---ttgtttttgctgtttttatggatgggaaactgaggctcag-aaggtgaaataagtggc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111578270 72 - 190429646 ctctat---caattggtg---gtgttgttgctgtttttatggatgggaaactgaggctcag-aaggtgaaataagtggc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110747455 72 - 189454096 ctctat---caattggtg---gtgttgttgctgtttttatggatgggaaactgaggctcag-aaggtgaaataagtggc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13313928 72 + 26754465 ctctat---caattggtg---gtgttgttgctgtttttatggatgggaaactgaggctcag-aaggtgaaataagtggc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4215485 72 - 5137665 ctctat---caattggtg---gtgttgttgctgtttttatggatgggaaactgaggctcag-aaggcgaaataagtggc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122924856 72 - 135778131 ctctat---caattggtg---ttgttgttgctgtttttatggatgggaaactgaggctcag-aaggtgaaataagtggc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2037197 72 + 2427316 ctctat---caattggtg---gtgttgttgctgtttttatggatgggaaactgaggctcag-aaggtgaaataagtggc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1332758 72 + 1448899 ctctat---caattggtg---gtgttgttgctgtttttatggatgggaaactgaggctcag-aaggtgaaataagtggc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53041072 75 - 190850796 ctctgt---cgattggtattgttgttgttgctgtttttatgaatgggaaactgaagctcag-aaggtgaaataagcagc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8200571 72 - 15139346 ctttat---caattggta---ttgttgttgctgtttttatgaatgggaaactgaggctcag-aaggtgaaataagtggc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6987305 75 - 7304997 ctctat---caattgtttttgttggtgttgttgtttttataaatgggaaactgaggctcag-aaggtgaaacaagtggc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9402288 75 - 11631747 ctctat---caattggtattgttgttgttgcggcttttatgaatgggaaactgaggctcag-aaggtgaaataagtagc i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1800631 73 + 3286835 ctctac---ccattagta---ctgttgttgctgtttacacagatgggaaactgaggctcagaaaggttaaataagtggc i micMur3.chrUn_NW_017968520v1 I 1 C 0 s mm10.chr5 76438587 75 + 151834684 ctctgt---taacttgtacggctgttgttgatgctgggatgaaaaggaaagtgggatgcca-gtgggctagtaagttcc i mm10.chr5 I 4 I 2 s canFam3.chr13 48023316 74 + 63241923 ccctat---aaattggtgtt-ttgtcgttgccacttatacagatgggaaactgaggctctg-aaggttaaataaatggc i canFam3.chr13 I 228 C 0 s dasNov3.JH568349 4117806 75 - 5279953 ctctataaataatcagtactactgttattgctgtttacacagat--gaaactgatgctcta-aaggttaaataagtgg- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1889981 115 + 4188776 I e otoGar3.GL873602 8637175 15 + 8790067 I a score=979119.000000 s hg38.chr4_KI270787v1_alt 86677 65 + 111943 cccgtgttcac--------tgtggctgcactgaaatttgaaccctggtagcctgggttcaagacccatgcttt s panTro5.chr4 119653912 65 - 194502333 cccgtgttcac--------tgtggctgcactgaaatttgaaccctggtagcgtgggttcaagacccatgcttt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121067445 65 - 195804263 cccgtgttcac--------tgtggctgcactgaaatttgaaccctggtagcctgggttcaagacccatgcttt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4496810 65 - 17550833 cctgtgttcac--------tgtggctgtactgaaatttgaaccctggtagcctgggttcaagacccatgcttt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69366204 65 - 118206036 cccgtgttcac--------tgtggctgcactgaaatttgaactctggtagcctgggttcaagactcatgcttt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111578342 65 - 190429646 cccgtgttcac--------tgtggctgcactgaaatttgaaccctggtagcctgggttcaaggcccatgcttt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110747527 65 - 189454096 cccgtgttcac--------tgtggctgcactgaaatttgaaccctggtagcctgggttcaaggcccatgcttt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13314000 65 + 26754465 cccgtgttcac--------tgtggctgcactgaaatttgaaccctggtagcctgagttcaaggcccatgcttt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4215557 65 - 5137665 cccatgttcac--------tgtggctgcactgaaatttgaaccctggtagcctgggttcaaggcccatgcttt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122924928 65 - 135778131 cccatgttcac--------tgtggctgcactgaaatttgaaccctggtagcctgggttcaaggcccatgcttt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2037269 65 + 2427316 cccgtgttcac--------tgtggctgcactgaaatttgaaccctggtagcctgggttcaaggcccatgcttt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1332830 65 + 1448899 cccgtgttcac--------tgtggctgcactgaaatttgaaccctggtagtctgggttcaaggcccattcttt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53041147 65 - 190850796 cctgtgttcac--------tatggctgcactgaaatttgaaccccagtagcctgggttcaaggcccatgcttt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8200643 65 - 15139346 cccgtgttcac--------tgtggccgcactgaaattggaaccctggtagcctgggtccaaggcccatgcttt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6987380 65 - 7304997 cccgtgttcac--------tgtggctgcactgaaatttgaaccctggtagcctgggttcaaggcccatgcttt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9402363 65 - 11631747 cccatgttcac--------tgtggctgcactgaaatttgaaccctggtagcctgggttcaaggcccatgcttt i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1800704 65 + 3286835 ccagcgttcac--------tgtggcagcactgaaatttgaaccctggttgcctgggttcacagtccatacttt i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8637190 65 + 8790067 CCAGGGTTCAC--------TAtggtgggactgaaatttgaaccctggcagcctgggttcatagaccatgctTG i otoGar3.GL873602 I 15 C 0 s mm10.chr5 76438664 64 + 151834684 attctggtcac--------t-tggcagcactgaaatctgagccctggtcacctgggttcacagcccatgctct i mm10.chr5 I 2 C 0 s canFam3.chr13 48023390 48 + 63241923 -------------------------AGTACTGAATCTAGAATGCTGGTTGCGTGGGTTCGTCACCCAGGCTCT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4117881 73 - 5279953 cccatggtcacacagctcacatggtagcaatggaattccaactctgattgcctgggttcacagcccaggctct i dasNov3.JH568349 C 0 I 810 e proCoq1.NW_012140747v1 1889981 115 + 4188776 I a score=71532.000000 s hg38.chr4_KI270787v1_alt 86742 6 + 111943 taaggc s panTro5.chr4 119653977 6 - 194502333 taaggt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121067510 6 - 195804263 taaggt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4496875 6 - 17550833 taaggt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69366269 6 - 118206036 taaggt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111578407 6 - 190429646 taaaga i rheMac8.chr5 C 0 I 1075 s macFas5.chr5 110747592 6 - 189454096 taaaga i macFas5.chr5 C 0 I 1075 s macNem1.NW_012012466v1 13314065 6 + 26754465 taaaga i macNem1.NW_012012466v1 C 0 I 1075 s cerAty1.NW_012001307v1 4215622 6 - 5137665 taaaga i cerAty1.NW_012001307v1 C 0 I 1079 s chlSab2.chr7 122924993 6 - 135778131 taaaga i chlSab2.chr7 C 0 I 1080 s manLeu1.NW_012104388v1 2037334 6 + 2427316 taaaga i manLeu1.NW_012104388v1 C 0 I 1079 s colAng1.NW_012119221v1 1332895 6 + 1448899 taagga i colAng1.NW_012119221v1 C 0 I 1080 s calJac3.chr3 53041212 6 - 190850796 taagga i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8200708 6 - 15139346 taagga i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6987445 6 - 7304997 taagga i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9402428 6 - 11631747 taagga i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1800769 6 + 3286835 taaggg i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8637255 6 + 8790067 AATGGG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76438728 6 + 151834684 taaGGA i mm10.chr5 C 0 C 0 s canFam3.chr13 48023438 6 + 63241923 TAAAGA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4118764 6 - 5279953 TAAGCA i dasNov3.JH568349 I 810 C 0 e proCoq1.NW_012140747v1 1889981 115 + 4188776 I a score=2136264.000000 s hg38.chr4_KI270787v1_alt 86748 163 + 111943 ctgga-caatactgtTCTGATAGACAATGTGGCATAGAAAATAGCAAACAAGCAGTGTAGAG--AAAGCATTTGTTATCACTGAGATCTGAGTCCCCAAAAAGACAAAACA-GTTAACAAAGCATACTAGTTTCCAGAT-TTGAAGATTTCCCAGATCAATT---AAAA-----TA s panTro5.chr4 119653983 163 - 194502333 ctgga-caatactgtTCTGATAGACAATGTGGCATAGAAAATAGCAAACAAGCAGTGTAGAG--AAAGCATTTATTATCACTGAGATCTGAGTCCCCAAAAAGACAAAACA-GTTAACAAAGCATACTAGTTTCCAGAT-TTGAAGATTTCCCAGATCAATT---AAAA-----TA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121067516 163 - 195804263 ctgga-caatactgtTCTGATAGACAATGTGGCATAGAAAATAGCAAACAAGCAGTGTAGAG--AAAGCATTTGTTATCACTGAGATCTGAGTCCCCAAAAAGACAAAACA-GTTAACAAAGCATACTAGTTTCCAGAT-TTGAAGATTTCCCAGATCAATT---AAAA-----TA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4496881 163 - 17550833 ctgga-caatactgtTCTGATAGACAATGTGGCATAGATAA-AGCAAACCAGCAGTGTAGAG--AAAGCATTTGTTATCACTGAGATCTGAGTCCCCAAAAAGACAAAACAGGTTAACAAAGCATACTAGTTTCCAGAT-TTGAAGATTTCCCAGATCAATT---AAAA-----TA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69366275 164 - 118206036 ctgga-caatactgtTCTGATAGACAATGTGGCACAGATAATAGCAAACCAGCAGTGTAGAG--AAAGCATTTGTTATCACTGAGATCTGAGTCTCCATAAAGACAAAACAGGTTAACAAAGTATACTGGTTTCCAGAT-TTGAAGATTTCCCAGATCAATT---AAAA-----TA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111579488 163 - 190429646 CTGGA-CAATACTGTTCTGATAGACAGTGTGGCACAGATAATAGCAAACCAGCAGCATAGAG--AAAGCATTTGTTGTCACTGAGATCTGAGTCCCCATAAAGACAAAACAGGTTAACAAAGTGTACCAGTTTCCAGAT-TTGAAGATTTCCCAGATCAATT----AAA-----TA i rheMac8.chr5 I 1075 C 0 s macFas5.chr5 110748673 163 - 189454096 CTGGA-CAATACTGTTCTGATAGACAGTGAGGCACAGATAATAGCAAACCAGCAGCATAGAG--AAAGCATTTGTTGTCACTGAGATCTGAGTCCCCATAAAGACAAAACAGGTTAACAAAGTGTACCAGTTTCCAGAT-TTGAAGATTTCCCAGATCAATT----AAA-----TA i macFas5.chr5 I 1075 C 0 s macNem1.NW_012012466v1 13315146 163 + 26754465 CTGGA-CAATACTGTTCTGATAGACAGTGTGGCACAGATAATAGCAAACCAGCAGCATAGAG--AAAGCATTTCTTGTCACTGAGATCTGAGTCCCCATAAAGACAAAACAGGTTAACAAAGTGTACCAGTTTCCAGAT-TTGAAGATTTCCCAGATCAATT----AAA-----TA i macNem1.NW_012012466v1 I 1075 C 0 s cerAty1.NW_012001307v1 4216707 163 - 5137665 CTGGA-CAATACTGTTCTGATAGACAGTGTGGCACAGATAATAGCAAACCAGCAGCATAGAG--AAAGCATTTGTTGTCACTGAGATCTGAGTCCCCATAAAGACAAAACAGGTTAACAAAGTGTACCAGTTTCCAGAT-TTGAAGATTTCCCAGATCAATT----AAA-----TA i cerAty1.NW_012001307v1 I 1079 C 0 s chlSab2.chr7 122926079 163 - 135778131 CTGGA-CAATACTGTTCTGATAGACAGTGTGGCACAGATAATAGCAAACCAGCAGCATAGAG--AAAGCATTTGTTGTCACTGAGATCTGAGTCCCCATAAAGACAAAACAGGTTAACAAAGTGTACCAGTTTCCAGAT-TTGAAGATTTCCCAGATCAATT----AAA-----TA i chlSab2.chr7 I 1080 C 0 s manLeu1.NW_012104388v1 2038419 163 + 2427316 CTGGA-CAATACTGTTCTGATAGACAGTGTGGCACAGATAATAGCAAACCAGCAGCATAGAG--AAAGCATTTGTTGTCACTGAGATCTGAGTCCCCATAAAGACAAAACAGGTTAACAAAGTGTACCAGTTTCCAGAT-TTGAAGATTTCCCAGATCAATT----AAA-----TA i manLeu1.NW_012104388v1 I 1079 C 0 s colAng1.NW_012119221v1 1333981 163 + 1448899 CTGGA-CAATACTGTTCTGATAGACAGTGTGGCACAGATAATAGCAAACCAGCAGTATAGAG--AAAGCATTTGTTATCACTGAGATCTGAGTCCCCATAAAGACAAAACAGGTTAACAAAGTATACCAGTTTCCAGAT-TTGAAGATTTCCCAGATCAATT----AAA-----TA i colAng1.NW_012119221v1 I 1080 C 0 s calJac3.chr3 53041218 164 - 190850796 ctagg-caatattgtTCTGATAGACACTATGGCACAGATAACAGCAAACCAGCAGTGTAGAG--GAAGCATTTGTTATCACTGAGATCTGAGTTCCCATAAAGACAAAACGGGTCAACAATGTGTACTAGTTTCCAGAT-TTGAAGATTTCCCAGATAGATT---AAAA-----TA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8200714 164 - 15139346 ctagg-caatactgtTCTGATAGACATTATGGCACAGATAACGGCAAACCAGCAGTGTAGAG--GCAGCATTTCTGATCACTGAGATCTGAGTCCCCATAAAGACAAAACAGGTCAACGAAGTATACTAGTTTCCAGAT-TTGAAGATTTCCCAGATCAATT---AAAA-----TA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6987451 163 - 7304997 caagg-caatactgtTCTGATAGACACTATGGCACAGACAAC-GCAAACCAGCAGTGTAGAG--GAAGCATTTGTTATCACTGAGATCTGAGTCCCCATAAAGACAAAATAGGTCAACAAAGTATACTAGTTTCCAGAT-TTGAAGATTTCCCAGATCAATT---AAAA-----TA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9402434 164 - 11631747 ctagg-caatactgtTCTGATAGACACTATGGCACAGATAACAGCAAACCAGCAGCGTAGAG--GAAGCATTTGTTATCACTGAGATCTGAGTCCCCATAAAGACAAAACAGGTCAACAAAGTATACTAGTTTCCAGAT-CTGAAGATTTCCCAGATCAATT---AAAA-----TA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1800775 162 + 3286835 ctaaa-caagactgtTTTGATGGAGAATGTCCCACAGGTAATAGCAAACCAGCAGTATAGAA--GAAGCATTTCCTAACGCTGAGATCGACATCCTCACAAAGACAAAACAGTTTGACAAAGTGTACTAGTTTCCACAC-GGGGGTATTTCTCAGATAAGTT-----AA-----TT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8637261 168 + 8790067 CTAAACCCATACTGTTTTCGTGGGCAAGGCAGCACAGATCACTACAACCCAGCAACACAGGA--GGTGCAGCTCCTCACACTGAGCTCTGCATCCTCAGAAGGACAAAATGGTTTGAAGAGGCATACTAGTTTCCAGAG-TTAGCGATTTCCCAGATCAGtt-----aattttttt i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76438734 151 + 151834684 TGGAG-TAACACTGTTCTGAAAGACAAGGTTGCACAGATGAATGCCA--------TGCAGAC--AACCCATTTCCTAACACTGAG-------TCTTTACGAAGACAAACCATATTGACAGAACACTCACTCACCCAGATATTGGAGTTTT--CAAACCAGTTCTTAAAA-----AA i mm10.chr5 C 0 I 25 s canFam3.chr13 48023444 163 + 63241923 CTAAG-CAATTTTGTTTTGAGAGACAACATAACACAAATAATAGCAAACCAGCAGTTTAGAG--GAAGCATTTCCTAACACTGATATCTGAGCCTTCAAAATGACAATACGGTTTGACAAAGGA-GTTAGTTTTCTGAT-TTGGGGATGTCCCAGGTCAGTT---Gaaa-----aa i canFam3.chr13 C 0 I 4 s dasNov3.JH568349 4118770 160 - 5279953 TTAAG-CAAAACTATCTCCACAGACAACATGGCACAGATAACTGCTAGC---CAGTTTAGAAGCAAAGCATTTCATTACACTGAGGCCTGAGTCCTCATAAAGACAAAATAGCTTGAAGAAGTACTCtggtttctaaat-tttaggaattcacagatcattt----aaa------- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1889981 115 + 4188776 I a score=140369.000000 s hg38.chr4_KI270787v1_alt 86911 18 + 111943 TTTTTTAAATGGTGGGG-G s panTro5.chr4 119654146 18 - 194502333 TTTTTTAAATGGTGGGG-G i panTro5.chr4 C 0 C 0 s panPan2.chr4 121067679 18 - 195804263 TTTTTTAAATGGTAGGG-G i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497044 18 - 17550833 TTTTTTAAATGGTGGGG-G i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69366439 19 - 118206036 TTTTTTAAATGGTGGGGAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111579651 18 - 190429646 TTTTTTAAATGGTGGGC-A i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110748836 18 - 189454096 TTTTTTAAATGGTGGGC-A i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13315309 18 + 26754465 TTTTTTAAATGGTGGGC-A i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4216870 18 - 5137665 TTTTTTAAATGGTGGGC-A i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122926242 18 - 135778131 TTTTTTAAATGGTGGGT-G i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2038582 18 + 2427316 TTTTTTAAATGGTGGGC-A i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1334144 18 + 1448899 TTTTTTAAATGGTGGGG-G i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53041382 18 - 190850796 TTTTTAAGTGGTGGGGG-G i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8200878 8 - 15139346 TTTTTAAG----------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6987614 12 - 7304997 TTTTTAAG------GGG-G i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9402598 18 - 11631747 TTTTTTAAGTGGTGGGG-G i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1800937 18 + 3286835 TCTTTTTAATGGTGGGG-G i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8637429 18 + 8790067 tttttttaatGATAGGG-G i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48023611 17 + 63241923 tttttttaattttaaGG-- i canFam3.chr13 I 4 C 0 s dasNov3.JH568349 4118930 17 - 5279953 -ttgtaaaaagttaggg-g i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1889981 115 + 4188776 I e mm10.chr5 76438885 25 + 151834684 I a score=104760.000000 s hg38.chr4_KI270787v1_alt 86929 17 + 111943 ATA---GAGGGATATTATGT-- s panTro5.chr4 119654164 17 - 194502333 ATA---GAGGGATATTATGT-- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121067697 17 - 195804263 ATA---GAGGGATATTATGT-- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497062 17 - 17550833 ATA---GAGGGATATTATGT-- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69366458 17 - 118206036 GTA---GAGGAATATTATGT-- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111579669 16 - 190429646 TT----GAAGAATATTATGT-- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110748854 16 - 189454096 TT----GAAGAATATTATGT-- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13315327 16 + 26754465 TT----GAAGAATATTATGT-- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4216888 16 - 5137665 TT----GAAGAATATTATGT-- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122926260 16 - 135778131 TT----GAAGAATATTATGT-- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2038600 16 + 2427316 TT----GAAGAATATTATGT-- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1334162 17 + 1448899 GTA---GAGGAATATTATGT-- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53041400 16 - 190850796 TA----GAGGAATATTATGT-- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8200886 15 - 15139346 -A----GAGGAATATTATGT-- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6987626 16 - 7304997 TA----GAGGAATATTATGT-- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9402616 16 - 11631747 TA----GAGGAATATTATGT-- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1800955 16 + 3286835 TG----GAGGAATATGATAA-- i micMur3.chrUn_NW_017968520v1 C 0 C 0 s otoGar3.GL873602 8637447 16 + 8790067 AG----GAGAAATAAGATGC-- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76438910 17 + 151834684 --AC-AGAGGTCTATGGCTT-- i mm10.chr5 I 25 C 0 s canFam3.chr13 48023628 17 + 63241923 ---CTGGAGGAACATgatat-- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4118947 14 - 5279953 --------gtggtatgatgtat i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1889981 115 + 4188776 I a score=819649.000000 s hg38.chr4_KI270787v1_alt 86946 55 + 111943 ACAATTGGCAACCTCTTTTTTGTTTGTAC--GTGCC--AAGTAAAAGCAT-T------AAAA---TAAC s panTro5.chr4 119654181 55 - 194502333 ACAATTGGCAACCTCTTTTTTGTTTGTAC--GTGCC--AAGTAACAGCAT-T------AAAA---TAAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121067714 55 - 195804263 ACAATTGGCAACCTCTTTTTTGTTTGTAC--GTGCC--AAGTAACAGCAT-T------AAAA---TAAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497079 55 - 17550833 ACAATTGGCAACCTCTTTTTTGTTTGTAC--GTGCC--AAGTAACAGCAT-T------AAAA---TAAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69366475 55 - 118206036 ACAATTGGCAACCTCTTTTTTGTTTGTAT--GTGCC--AAGTAACAGCAT-T------AAAA---TAAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111579685 55 - 190429646 ACAATTGACAACCTCTTTTTTGTTTGTAC--GTGCC--AAGTAACAGCAT-T------AAAA---TAAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110748870 55 - 189454096 ACAATTGACAACCTCTTTTTTGTTTGTAC--GTGCC--AAGTAACAGCAT-T------AAAA---TAAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13315343 55 + 26754465 ACAATTGACAACCTCTTTTTTGTTTGTAT--GTGCC--AAGTAACAGCAT-T------AAAA---TAAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4216904 55 - 5137665 ACAATTGACAACCTCTTTTTTGTTTGTAC--GTGCC--AAGTAACAGCAT-T------AAAA---TAAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122926276 55 - 135778131 ACAATTGACAACCTCTTTTTTGTTTGTAC--GTGCC--AAGTAACAGCAT-T------AAAA---TAAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2038616 55 + 2427316 ACAATTGACAACCTCTTTTTTGTTTGTAC--GTGCC--AAGTAACAGCAT-T------AAAA---TAAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1334179 55 + 1448899 ACAATTGACAACCTCTTTTTTGTTTGTAT--GTGCC--AAGTAACAGCAT-T------AAAA---TAAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53041416 55 - 190850796 ACAATTGACAACTTCTTTTTTGTTTGTAC--ATGCC--AAGTACAAGTAT-T------AAAA---TAAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8200901 55 - 15139346 ACAATTGACAACTTCTTTTTTGTTTGTAC--ATGCC--ACGTAAAAGTAT-T------AAAA---TAAC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6987642 54 - 7304997 ACAATTGACAACTT-TTTTTTGTTTGTAC--ATGCC--AAGTAAAAGTAT-T------AAAA---TAAC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9402632 55 - 11631747 ACAATTGACAACTTCTTTTTTGTTTGTAC--ATGCC--AAGTAAAAGTAT-T------AAAA---TAAC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1800971 55 + 3286835 ACAACTGGCAACCTCTTCTTTGGTTGTGT--Atgcc--aggtaaaaacat-t------aaaa---caac i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1890096 55 + 4188776 ACAACTGGCAACCTCTTCTTTGTTTGTGT--ATGCT--AGGTAAAAACAT-T------AAAA---CAAC i proCoq1.NW_012140747v1 I 115 C 0 s otoGar3.GL873602 8637463 52 + 8790067 ACAGCTGCCAACCTATTCT----TTGTGT--GTGAG--AGGTTAGAATGGAT------GAAA---CAAC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76438927 60 + 151834684 ACAAATGACAACCT---TTCTGTTTGCAT--GCATTAAaaatgagaacat-tataacaataa---taac i mm10.chr5 C 0 C 0 s canFam3.chr13 48023645 55 + 63241923 agagctgacaac---ttttttgtttgtgt--gtgcc--gagtaagaacat-g------aaaatggtaag i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4118961 57 - 5279953 acaattggcaacctcgttttcgttgtcattattgcc--aagtaagaacat-t------aaaa---caac i dasNov3.JH568349 C 0 I 491 a score=145036.000000 s hg38.chr4_KI270787v1_alt 87001 8 + 111943 TACCAGGG s panTro5.chr4 119654236 8 - 194502333 TACCAGGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121067769 8 - 195804263 TACCAGGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497134 8 - 17550833 TACCAGGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69366530 8 - 118206036 TACCAGGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111579740 8 - 190429646 TACCAGGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110748925 8 - 189454096 TACCAGGg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13315398 8 + 26754465 TACCAGGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4216959 8 - 5137665 TACCAGGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122926331 8 - 135778131 TACCAGGg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2038671 8 + 2427316 TACCAGGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1334234 8 + 1448899 TACCAGGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53041471 8 - 190850796 TACCAGGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8200956 8 - 15139346 TACCAGGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6987696 8 - 7304997 TGCCAGAg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9402687 8 - 11631747 TACCAGGG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1801026 8 + 3286835 taccaggg i micMur3.chrUn_NW_017968520v1 C 0 I 249 s proCoq1.NW_012140747v1 1890151 8 + 4188776 TGCCAGGG i proCoq1.NW_012140747v1 C 0 I 86 s otoGar3.GL873602 8637515 8 + 8790067 TACCAGGG i otoGar3.GL873602 C 0 I 43 s mm10.chr5 76438987 8 + 151834684 caccagag i mm10.chr5 C 0 I 24 s canFam3.chr13 48023700 8 + 63241923 taccaaga i canFam3.chr13 C 0 C 0 e dasNov3.JH568349 4119018 491 - 5279953 I a score=87016.000000 s hg38.chr4_KI270787v1_alt 87009 8 + 111943 -TTGGGAAA s panTro5.chr4 119654244 8 - 194502333 -TTGGGAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121067777 8 - 195804263 -TTGGGAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497142 8 - 17550833 -TTGGGAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69366538 8 - 118206036 -TTGGGAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111579748 8 - 190429646 -TTGGGAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110748933 8 - 189454096 -ttgggaaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13315406 8 + 26754465 -TTGGGAAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4216967 8 - 5137665 -TTGGGAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122926339 8 - 135778131 -ttgggaaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2038679 8 + 2427316 -TTGGGAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1334242 8 + 1448899 -TTGGGAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53041479 8 - 190850796 -TTGGGAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8200964 8 - 15139346 -TTGGGAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6987704 8 - 7304997 -ttgggaaa i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9402695 8 - 11631747 -TTGGGAAA i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48023708 8 + 63241923 atagtgaa- i canFam3.chr13 C 0 I 46 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I e mm10.chr5 76438995 24 + 151834684 I e dasNov3.JH568349 4119018 491 - 5279953 I e otoGar3.GL873602 8637523 43 + 8790067 I a score=2765204.000000 s hg38.chr4_KI270787v1_alt 87017 281 + 111943 ACTGGCTAGCCATATGcagaaaactgaacagaaaac----caaacactgcatgttctcattcataagtgggaattgaacaacgagaacacatggatacagggaggggaacatcatacaca-ggggcctgtcgggaggt-ggggggctaggagagggagagcattaagacaaatacctaatgtagatgacaggttgatgggtgcagcaaaccaccatggcacatgtatacctatgtaacaaacctgcacgttctgcatacgtatcccagaacttaaagtacaaaaaaa s panTro5.chr4 119654252 281 - 194502333 ACTGGCTAGCCATATGcagaaaactgaacagaaaac----caaacactgcatggtctcattcataagtgggaattgaacaacaagaacacatggatacagggaggggaacatcatacaca-ggggcctgtcgggaggt-ggggggctaggagagggagagcattacgacaaatacctaatgtagatgacaggttgatgggtgcagcaaaccaccatggcacatgtatacctgtgtaacaaacctgcacgttctgcatatgtatcccagaacttaaagtacaaaaaaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121067785 280 - 195804263 ACTGGCTAGCCATATGcagaaaactgaacagaaaac----caaacactgcatggtctcattcataagtgggaattgaacaacaagaacacatggatacagggaggggaacatcatacaca-ggggcctgtcgggaggt-ggggggctaggagagggagagcattacaacaaatacctaatgtagatgacaggttgatgggtgcagcaaaccaccatggcacatgtatacctgtgtaacaaacctgcacgttctgcatatgtatcccagaacttaaagt-caaaaaaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497150 281 - 17550833 ACTGGCTAGCCATATGcagaaaactgaacagaaaac----caaacactgcatgttctcattcataagtgggaactgaacaacgagaacacatggatacagggaggggaacatcatacaca-gaggcctgtcgggaggt-ggggggctaggagagggagagcattatgacaaatacctaatgtagatgacaggttgatgggtgcagcaaaccaccatggcacatgtatacctatgtaacaaacctgcacgttctgcatatgtatcccagaacttaaagtacaaaaaaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69366546 282 - 118206036 ACTGGCTAGTCATATGcagaaaactgaacagaaaac----caaacactgcatgttctcattcataagtgggaattgaacaacgagaacacatggatacagggaggggaacatcatacaca-ggggcctgttgggaggtgggggggctaggagagagagagcattaggacgaatacctaatatagatgacaggttgatgggtgcagcaaaccaccatggcacacgtatacctatgtaacgaacctgcacgttctgcatatgtatcccagaacttaaagtacaaAAGaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111579756 282 - 190429646 ACTGGCTAGCCATATGcagaaaactgaacagaaaac----caaacaccacatgttctcactcagaagtgggagttaaacaatgagaacacatggatacagggaggggaacatcacacacatggggcctgtcaggaggt-ggggggctaggggagggagagcattaggacaaatgcctaatgtagatgacaggttgatgggtgcagcaaaccaccatggcacgtgtatacctatgtaacaaacctgcacgttctgcatatgtatcccagaacttaaagtataaaaaaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110748941 282 - 189454096 actggctagccatatgcagaaaactgaacagaaaac----caaacaccacatgttctcactcagaagtgggagttaaacaatgagaacacatggatacagggaggggaacatcacacacatggggcctgtcaggaggt-ggggggctaggggagggagagcattaggacaaatgcctaatgtagatgacaggttgatgggtgcagcaaaccaccatggcacgtgtatacctatgtaacaaacctgcacgttctgcatatgtatcccagaacttaaagtataaaaaaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13315414 282 + 26754465 TCTGGCTAGCCATATGcagaaaactgaacagaaaac----caaacaccacatgttctcactcagaagtgggagttaaacaatgagaacacatggatacagggaggggaacatcacacacatggggcctgtcagaaggt-ggggggctaggggagggagagcattaggacaaatgcctaatgtagatgacaggttgatgggtgcagcaaaccaccatggcacgtgtatacctatgtaacaaacctgcacgttctgcatatgtatcccagaacttaaagtataaaaaaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4216975 282 - 5137665 ACTGGCTAGCCATATGcagaaaactgaacagaaaac----caaacaccacatgttctcactcagaagtgggagttaaacaatgagaacacatggatacagggaggggaacatcacacacatggggcctgtcaggaggt-tgggggctaggggagggagagcattaggacaaatgcctaatgtagatgacaggttgatgggtgcagcaaaccaccatggcacgtgtatacctatgtaacaaacctgcacattctgcatatgtatcccagaacttaaagtataaaaaaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122926347 282 - 135778131 actggctagccatatgcagaaaactgaacagaaaac----caaacaccacatgttctcactcagaagtgggagttaaacaatgagaacacatggatacagggaggggaacatcacacacatggggcctgtcaggaggt-ggggggctaggggagggagagcattaggacaaatgcctaatgtagatggcaggttgatgggtgcagcaaaccaccatggcacgtgtatacctatgtaacaaacctgcacgttctgcacatgtatcccagaacttaaagtataaaaaaa i chlSab2.chr7 C 0 I 4 s manLeu1.NW_012104388v1 2038687 282 + 2427316 ACTGGCTAGCCATATGcagaaaactgaacagaaaac----caaacaccacatgttctcactcagaagtgggagttaagcaatgagaacacatggatacagggaggggaacatcacacacatggggcctgtcaggaggt-ggggggctaggggagggagagcattaggacaaatgcctaatgtagatgacaggttgatgggtgcagcaaaccaccatggcacgtgtgtacctatgtaacaaacctgcacgttctgcatatgtatcccagaacttaaagtataaaaaaa i manLeu1.NW_012104388v1 C 0 I 247 s colAng1.NW_012119221v1 1334250 282 + 1448899 ACTGGCTAGCCATATGcagaaaactgaacagaaaac----caaacaccgcatgttctcactcagaagtgggagttaaacaatgagaacacatggatacagggaggggaacatcacacacatggggcctgtcaggaggt-ggggggctaggggagggagagcattaggacaaatacctaatgtagatgacaggttgatgggtgcagcaaaccaccatgacacgtgtatacctatgtaacaaacctgcacattctgcatatgtatcccagaacttaaagtattaaaaaa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53041487 282 - 190850796 ACTGGCTAGCCATATGcagaaaactgaacagaaaac----caaacactgcttgttctcattcataactgggagttgaacaatgaaaacacatgggcacagagaggggaacatcacacact-ggggcctgtcaggggttgtggaggctagaggagggatagcattaggagaaatacctaatgtagattacaggttgatgggtgcagcaaaccaccatgccatgtgcatgactatgtaacaaacctgcacgttctgcacatgtatcccagaacctaaagtataaaaaac i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8200972 286 - 15139346 ACTGGCTAGCCATATGcagaaaactgaacaggaaaccaaacaaacacctcttgttctcactcataagtgggagttgaacaatgaaaacacatgggcacagagaggggaacatcatacact-ggggcctgtcaggggttaggggggctagaggagggatagcattagcagaaatacctaatgtagacaacgggttgatgggtacagcaaaccaccatggcatgtgtatgtctatgtaacaaacctgcacgttctgcgcatgtaccccagaacttaaagtataaaaaac i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6987712 282 - 7304997 actggctagccatatgcagaaaaCCgaacagaaaac----caaacactgcttgttctcactcataagtgggaattgaacaacaaaaacacatgggcacagagaggggaacatcatacact-gatgcctgtcaggggttgcgggggctagaggagggatagcattaggagaaatacctaacgttgataacgggttgatgggtgcagcaaaccaccatggcatgtgtatgtctatgtaacaaacctgcatgttctgcacatatatcccagaacttaaagtataaaaaac i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9402703 282 - 11631747 ACTGGCTAGCCATATGcagaaaactgaacagaaaac----caaacaccgcttgttctcactggtaagtgggagttgaacaatgaaaacacatgggcgcagagaggggaacatcatacact-ggggcctgtcaggggttgggggggctagaggagggatagcgttaggagaaatacctaatgtagataactggttgatgggtgcagcaaaccaccatggcatgtgtatgcctaggtaacaaacctgcacattccgcacatgtaccccagaacttaaagcataaaaaac i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I e mm10.chr5 76438995 24 + 151834684 I e dasNov3.JH568349 4119018 491 - 5279953 I e otoGar3.GL873602 8637523 43 + 8790067 I e canFam3.chr13 48023716 46 + 63241923 I a score=13289.000000 s hg38.chr4_KI270787v1_alt 87298 5 + 111943 aaaaa- s panTro5.chr4 119654533 5 - 194502333 aaaaa- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121068065 5 - 195804263 aaaaa- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497431 5 - 17550833 aaaaa- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69366828 5 - 118206036 gaaga- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580038 5 - 190429646 agaag- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110749223 5 - 189454096 agaag- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13315696 5 + 26754465 agaag- i macNem1.NW_012012466v1 C 0 I 145 s cerAty1.NW_012001307v1 4217257 5 - 5137665 agaag- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122926633 5 - 135778131 gaaaG- i chlSab2.chr7 I 4 C 0 s manLeu1.NW_012104388v1 2039216 5 + 2427316 aaaag- i manLeu1.NW_012104388v1 I 247 C 0 s colAng1.NW_012119221v1 1334532 4 + 1448899 -aaag- i colAng1.NW_012119221v1 C 0 I 3 s calJac3.chr3 53041769 4 - 190850796 --aaac i calJac3.chr3 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I e mm10.chr5 76438995 24 + 151834684 I e dasNov3.JH568349 4119018 491 - 5279953 I e aotNan1.NW_018493494v1 9402985 0 - 11631747 C e cebCap1.NW_016107439v1 6987994 0 - 7304997 C e saiBol1.JH378162 8201258 0 - 15139346 C e otoGar3.GL873602 8637523 43 + 8790067 I e canFam3.chr13 48023716 46 + 63241923 I a score=15817.000000 s hg38.chr4_KI270787v1_alt 87303 11 + 111943 aaaaaaaaaga s panTro5.chr4 119654538 11 - 194502333 aaaagaaaaga i panTro5.chr4 C 0 C 0 s panPan2.chr4 121068070 11 - 195804263 aaaGAAGAANA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497436 11 - 17550833 aaaaaaaagaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69366833 9 - 118206036 agaaaagaa-- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580043 9 - 190429646 aaagaaaga-- i rheMac8.chr5 C 0 I 217 s macFas5.chr5 110749228 9 - 189454096 aaaGAAaga-- i macFas5.chr5 C 0 I 1 s macNem1.NW_012012466v1 13315846 9 + 26754465 aaagaaagg-- i macNem1.NW_012012466v1 I 145 I 1 s cerAty1.NW_012001307v1 4217262 9 - 5137665 aaagaaaga-- i cerAty1.NW_012001307v1 C 0 I 68 s chlSab2.chr7 122926638 9 - 135778131 AAagaaaga-- i chlSab2.chr7 C 0 I 91 s manLeu1.NW_012104388v1 2039221 9 + 2427316 aaaagaaaa-- i manLeu1.NW_012104388v1 C 0 I 4 s colAng1.NW_012119221v1 1334539 9 + 1448899 aaagaaaga-- i colAng1.NW_012119221v1 I 3 I 80 s calJac3.chr3 53041773 1 - 190850796 -----a----- i calJac3.chr3 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I e mm10.chr5 76438995 24 + 151834684 I e dasNov3.JH568349 4119018 491 - 5279953 I e aotNan1.NW_018493494v1 9402985 0 - 11631747 C e cebCap1.NW_016107439v1 6987994 0 - 7304997 C e saiBol1.JH378162 8201258 0 - 15139346 C e otoGar3.GL873602 8637523 43 + 8790067 I e canFam3.chr13 48023716 46 + 63241923 I a score=-9652.000000 s hg38.chr4_KI270787v1_alt 87314 2 + 111943 --aa s panTro5.chr4 119654549 2 - 194502333 --aa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121068081 2 - 195804263 --AA i panPan2.chr4 C 0 I 316 s gorGor5.CYUI01014963v1 4497447 1 - 17550833 --a- i gorGor5.CYUI01014963v1 C 0 I 4 s macFas5.chr5 110749238 1 - 189454096 --a- i macFas5.chr5 I 1 C 0 s macNem1.NW_012012466v1 13315856 1 + 26754465 --a- i macNem1.NW_012012466v1 I 1 C 0 s cerAty1.NW_012001307v1 4217339 1 - 5137665 --a- i cerAty1.NW_012001307v1 I 68 C 0 s chlSab2.chr7 122926738 1 - 135778131 --a- i chlSab2.chr7 I 91 C 0 s manLeu1.NW_012104388v1 2039234 1 + 2427316 --a- i manLeu1.NW_012104388v1 I 4 C 0 s colAng1.NW_012119221v1 1334628 1 + 1448899 --a- i colAng1.NW_012119221v1 I 80 C 0 s calJac3.chr3 53041774 2 - 190850796 ca-- i calJac3.chr3 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I e mm10.chr5 76438995 24 + 151834684 I e dasNov3.JH568349 4119018 491 - 5279953 I e aotNan1.NW_018493494v1 9402985 0 - 11631747 C e cebCap1.NW_016107439v1 6987994 0 - 7304997 C e saiBol1.JH378162 8201258 0 - 15139346 C e otoGar3.GL873602 8637523 43 + 8790067 I e canFam3.chr13 48023716 46 + 63241923 I e nomLeu3.chr9 69366842 0 - 118206036 C e rheMac8.chr5 111580052 217 - 190429646 I a score=33229.000000 s hg38.chr4_KI270787v1_alt 87316 23 + 111943 agaaaaaaaaaa------gaaaga-aagaa s panTro5.chr4 119654551 28 - 194502333 agaaaaaaaaaaagaaa-gaaaga-aagaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121068399 23 - 195804263 aaaaaaaaaaaa------GAAAGA-AAGAA i panPan2.chr4 I 316 C 0 s gorGor5.CYUI01014963v1 4497452 23 - 17550833 aaaaaaaaaaaa------GAAAGA-AAGAA i gorGor5.CYUI01014963v1 I 4 C 0 s nomLeu3.chr9 69366842 13 - 118206036 ----------aa------gaaaga-aagaa i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110749239 23 - 189454096 gaaagagagaga------gagaaa-aaaag i macFas5.chr5 C 0 I 194 s macNem1.NW_012012466v1 13315857 23 + 26754465 aagaaaagaaaa------gaaaag-aaaaG i macNem1.NW_012012466v1 C 0 I 2 s cerAty1.NW_012001307v1 4217340 23 - 5137665 gaaagaaagaaa------gaaaga-aaaga i cerAty1.NW_012001307v1 C 0 I 1 s chlSab2.chr7 122926739 23 - 135778131 aaaaagaagaaa------gaaaga-aagaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039235 24 + 2427316 gaaaggaaaaga------gagagagaagaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1334629 23 + 1448899 gaaagaaagaaa------gaaaga-aaaag i colAng1.NW_012119221v1 C 0 I 14 s calJac3.chr3 53041776 23 - 190850796 --caaacaaaacaaaaaaaaaaca-a---- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8201258 7 - 15139346 ------------------aaaaca-a---- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6987994 16 - 7304997 --aaaacaaaaC------AAAAC--A---- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9402985 12 - 11631747 -------aaaac------aaaaCG-A---- i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I e mm10.chr5 76438995 24 + 151834684 I e dasNov3.JH568349 4119018 491 - 5279953 I e otoGar3.GL873602 8637523 43 + 8790067 I e canFam3.chr13 48023716 46 + 63241923 I e rheMac8.chr5 111580052 217 - 190429646 I a score=3136621.000000 s hg38.chr4_KI270787v1_alt 87339 317 + 111943 aagCTACC-AGGAGCATCAACATAGCTCCTCACAAAATAAATGACCTT-gactaggcttggtgactcatgcctataatcccagcacctggggaggccgagatgggtggatcacctgaggtcatgagttcgagaccagcctggccaacatggtgaaacccggcatctactgaaaatac-aaaaaaatcagctgggcatggtgatgggtgcctataatcccacctactcaggaggctgaggcagaagaatcacttgaacacgggaggtggaggttgccgtgagccaagattgtgccattacactccagcctgggcaacagag s panTro5.chr4 119654579 317 - 194502333 aAGCTACC-AGGAGCATCAACATAGCTCCTCACAAAATAAATGACCTT-gaccaggcttggtgactcatgcctgtaatcccagcacctggggaggccgagatgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaacccggcatctactgaaagtac-aaaaaaatcagctgggcgtggtgatgggcgcctataatcccacctactcaggaggctgaggcagaagaatcacttgaacacgggaggtggaggttgccgtgagccaagattgtgccattacactccagcctgggcaacagag i panTro5.chr4 C 0 C 0 s panPan2.chr4 121068422 317 - 195804263 AAGCTACC-AGGAGCATCAACATAGCTCCTCACAAAATAAATGACCTT-gaccaggcttggtgactcatgcctgtaatcccagcacctggggaggccgagatgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaacccggcatctactgaaagtac-aaaaaaatcagctgggcgtggtgatgggcgcctataatcccacctactcaggaggctgaggcagaagaatcacttgaacacgggaggtggaggttgccgtgagccaagattgtgccattacactccagcctgggcaacagag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497475 316 - 17550833 AAGCTACC-AGGAGCATCAACATAACTCCTCACAAAATAAATGACCTT-gaccaggcttggtgactcatgcctgtaatcccagcacctggggaggccgagacgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccc-gtatctactgaaaatac-aaaaaaatcagctgggcgtggtgatgggcgcctataatcccacctactcaggaggctgaggcagaagaatcacttgaacacgggaggtggaggttgcagtgagccaagattgtgccattacactccagcctgggcaacagag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69366855 316 - 118206036 aagCTACC-AGGAGCATCAACATAGCTCCTCACAAAATAAATGACCTT-ggccaggcttggtggctcacgcctgtaatcccagcacttggggaggccgagatgggtggatcacctgaggtcaggagtttaagaccagcctggccaacatggtgaaacctggtctctactgaaaatac-aaaaaaatcagctgggtgtggtgatgggcgcctataatcccacctactcaggaggctgaggcagaagaatcacttgaacatgggaggtggaggttgcagtgagccaagattgtgccattacactgcagcct-ggcaacagag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580269 318 - 190429646 AAGCTACC-AGGAGCATCAACACAGCTCCTCACGAAATAAATGACCTTGggccgggcttggtgactcacgcctgtaatcccagcattttgggaggccgagatgggtggatcacctcaggtcaggagttagagaccaacctggccaacatggtgaaacccggtctctactgaaaatac-aaaaaaatcagctgggcctggtgatgggtgcctgtaatcccacctacttaggaggctgaggcaggagaatcacttgaacacaggaggtggaggttgcagtgagtcaagatcatgccattgtactccagcctgggcgacagag i rheMac8.chr5 I 217 C 0 s macFas5.chr5 110749456 317 - 189454096 AAGCTACC-AGGAGCATCAACACAGCTCCTCACGAAATAAATGACCTT-ggccgggcttggtgactcacgcctgtaatcccagcattttgggaggccgagatgggtggatcacctcaggtcaggagttagagaccaacctggccaacatggtgaaacccggtctctactgaaaatac-aaaaaaatcagctgggcctggtgatgggtgcctgtaatcccacctacttaggaggctgaggcaggagaatcacttgaacacaggaggtggaggttgcagtgagtcaagatcatgccattgtactccagcctgggcgacagag i macFas5.chr5 I 194 C 0 s macNem1.NW_012012466v1 13315882 317 + 26754465 AAGCTACC-AGGAGCATCAACACAGCTCCTCACGAAATAAATGACCTT-ggccgggcttggtgactcacgcctgtaatcccagcattttgggaggccgagatgggtggatcacctcaggtcaggagttagagaccaacctggccaacatggtgaaacccggtctctactgaaaatac-aaaaaaatcagctgggcctggtgatgggtgcctgtaatcccacctacttaggaggctgaggcaggagaatcacttgaacacaggaggtggaggttgcagtgagtcgagatcatgccattgtactccagcctgggcgacagag i macNem1.NW_012012466v1 I 2 C 0 s cerAty1.NW_012001307v1 4217364 317 - 5137665 aAGCTACC-AGGAGCATCAACACAGCTCCTCACGAAATAAATGACCTT-ggccgggcttggtgactcacgcctgtaatcccagcattttgggaggccgagatgggtggatcacctgaggtcaggagttagagaccagcctggccaacatggtgaaacccggtctctactgaaaatac-aaaaaaatcagctggacctggtgatgggtgcctgtaatcccacctacttaggaggctgaggcaggagaatcacttgaacacaggaggtggaggttgcagtgagtcaagatcatgccattgtactccagcctgggcgacagag i cerAty1.NW_012001307v1 I 1 C 0 s chlSab2.chr7 122926762 317 - 135778131 aAGCTACC-AAGAGCATCAACACAGCTCCTCACAAAATAAATGACCTT-ggccgggcttggtgactcacgcctgtaatcccagcattttgggaggccgagatgggtggatcacctgaggtcaggagttagagaccagcctggccaacatggtgaaacccggtctctactgaaaatac-aaaaaaatcagctgggcatggtgatgggtgcctgtaatcccacctacttaggaggctgaggcaggagaatcacttgaacacaggaggtggaggttgcagtgagtcaagatcatgccattgcactccagcccgggcaacagag i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039259 317 + 2427316 aagCTACC-AGGAACATCAACACAGCTCCTCACGAAATAAATGACCTT-ggctgggcttggtgactcatgcctgtaatcccagcattttgggaggccgagatggatggatcacctgaggtcaggagttagagaccagcctggccaacatgatgaaacccggtctctactgaaaatac-aaaaaaaccagctgggcctggtgatgggtgcctgtaatcccacctacttaggaggctgaggcaggagaatcacttgaacacaggaggtggaggttgcagtgagtcaagatcatgccattgtactccagcctgggcgacagag i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1334666 318 + 1448899 aagCTATC-AGGAGCATCAACATAGCTCCTCACAAAATAAATGACCTT-ggccgggcttagtgactcacgcctgtaatcctagcattttgggaggccgagatgggtggatcacctgaggtcaggagttagagaccagcctggccaacattgtgaaacccggtctctactgaaaatacaaaaaaaatcagctgggcatggtgatgggtgcctgtaatcccacctacttaggaggctgaggcaggagaatcacttgaacacaggaggtggaggttgcagtgagtcaagatcatgccattgcactccagcctgggtgacagag i colAng1.NW_012119221v1 I 14 C 0 s calJac3.chr3 53041799 317 - 190850796 aaGCTACTGGGGAGCATCAACATAGCTCCTCACAAAATAAATGACCTT-gactaggcacgacggctcatgcctgtaatcccagcactttcagaggctgagatgggtggatcacctgaggtcaggagttcgagatcagcgttgccaacatggtgaaacccagtctctactaaaaatac--aaaaaatcagctgggcttggtgatgggagcctgtaatcccggctacttgggaggctgaggcaggagaatcacttgaatatgggaggtggaggttgcagtgagccaagatcgtgctattgcactccagcctgggcaatagag i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8201265 317 - 15139346 aaGCTACTGGGGAGCATCAATATAGCTTCTCAAAAAATAAATGACCTT-ggctaggcacgatggctcatgcctgtaatcccagcactttgggaggctgagatgggtggatcacctgaggtcaggagttcgagaccagccttgccaacatggtgaaacccagtctctactaaaaatac-aaaaaaatcagctgggcatggtggtgggagcctgtaatcccagctacttgggaggctgaagcaggagaatcacttgaaca-aggaggtggaggttgcagtgagccaagatcttgctattgcactccagcctgggcaatcgag i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6988010 317 - 7304997 AAGCTACTGGGGAGCATCAACATAGCTCCTCACAAAATAAATGACCTT-ggctaggcatgatggctcatgcctgtaatcccagcactttgggaggctgagatgggtggatcacctgaggtcaggagttcgagaccagccttgccaacatggtgaaacccagtctctactaaaaacac--aaaaaattagctgggcgtggtggtgggagcctgtaatcccagctacttgggaggctgagacaggagaatcacttgaacacaggaggtggaggttgtagtgagccaaggtcgtgctgttgcattccagcctgggcaatagag i cebCap1.NW_016107439v1 C 0 I 59 s aotNan1.NW_018493494v1 9402997 317 - 11631747 AAGCTACTGGGGAGCATCAACATAGTTCCTCACAAAATAAATAACCTT-ggctaggcacgatggctcatgcctgtaatcccagcactttgggaggctgagatgggtggatcacctgaggtcaggagttcgagaccagccttgccaacatggtgaaacccagtctctactaaaaatac--aaaaaatcagctgggcatggtggtgggagcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacacgggaggtggaggttgcagtgagccaagattgtgctattgcactccagcctgggcaatagag i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I e mm10.chr5 76438995 24 + 151834684 I e dasNov3.JH568349 4119018 491 - 5279953 I e otoGar3.GL873602 8637523 43 + 8790067 I e canFam3.chr13 48023716 46 + 63241923 I a score=204983.000000 s hg38.chr4_KI270787v1_alt 87656 51 + 111943 ggagactctgtctcaaaga------------aC--------ataaataaataa-----------ttaaataaataaataaat s panTro5.chr4 119654896 47 - 194502333 ggagactctgtctcaaaga------------aC--------ataaataaataa---------------ataaataaataaat i panTro5.chr4 C 0 C 0 s panPan2.chr4 121068739 47 - 195804263 ggagactctgtctcaaaga------------aC--------ataaataaataa---------------ataaataaataaat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497791 62 - 17550833 ggagactctgtctcaaaaa------------aC--------ataaataaataaataaaaaataaataaataaataaataaat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367171 35 - 118206036 ggagactctatctcaaaaa------------ac--------ataaataaataa---------------------------aT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580587 35 - 190429646 ggagactctgtctcataaa------------ac--------ataaataaataa---------------aT------------ i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110749773 35 - 189454096 ggagactctgtctcataaa------------ac--------ataaataaataa---------------aT------------ i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13316199 35 + 26754465 ggagactctgtctcataaa------------ac--------ataaataaataa---------------aT------------ i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4217681 35 - 5137665 ggagactctgtctcataaa------------ac--------ataaataaataa---------------aT------------ i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122927079 43 - 135778131 ggagactctgtctcataaa------------acataaataaataaataaataa---------------aT------------ i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039576 35 + 2427316 ggagactctgtctcataaa------------aC--------ATAAATAGATAA---------------AT------------ i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1334984 35 + 1448899 ggagactctgtctcataaa------------aC--------ataaataaataa---------------at------------ i colAng1.NW_012119221v1 C 0 I 29 s calJac3.chr3 53042116 35 - 190850796 tgagactctgtcttaaaaa------------ac--------atacatacataa---------------ta------------ i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8201582 39 - 15139346 tgagactctgtcttaaaaa--------aCATAC--------ATACATACATAA---------------TT------------ i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9403314 47 - 11631747 tgagactctgtcttaaaaaacatacatacatac--------atacatacataA---------------TT------------ i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I e mm10.chr5 76438995 24 + 151834684 I e dasNov3.JH568349 4119018 491 - 5279953 I e cebCap1.NW_016107439v1 6988327 59 - 7304997 I e otoGar3.GL873602 8637523 43 + 8790067 I e canFam3.chr13 48023716 46 + 63241923 I a score=100319.000000 s hg38.chr4_KI270787v1_alt 87707 90 + 111943 TTAGGCACTGAAatatatatatacacac------acatacat-actatatatatatacacatatatatatacacacatatatatacacatatatata s panTro5.chr4 119654943 90 - 194502333 TTAGGCACTGAAatatatatatacacac------acatacat-actatatatatacacacatatatatacacacacatatatatacacatatatgta i panTro5.chr4 C 0 I 38 s panPan2.chr4 121068786 90 - 195804263 TTAGGCACTGAAatatatatatacacac------acatacat-actatatatatacacacatatatatacacacacatatatacacatatatacaca i panPan2.chr4 C 0 I 24 s gorGor5.CYUI01014963v1 4497853 79 - 17550833 TTAGGCACTGAAatatatatatatacac------acatacat-actatatatatatacacacatatatatatacacacacatatac----------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367206 77 - 118206036 TTAGGCACTGAAatatatatatatacac------acatacat-actatatatatatatacacacatacatatacacatacacac------------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580622 37 - 190429646 TTAAGCACTGAAATATATATacacacac------acacacata------------------------------------------------------ i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110749808 36 - 189454096 TTAAGCACTGAAATATATATacacacac------acacacat------------------------------------------------------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13316234 36 + 26754465 TTAAGCTTTGAAATATATATacacacac------acacacat------------------------------------------------------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4217716 36 - 5137665 TTAAGCACTGAAATATATATacacacac------acacacat------------------------------------------------------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122927122 42 - 135778131 GTAAGCACTGAAATATATTTacacacacacatacacacacac------------------------------------------------------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039611 26 + 2427316 TTAAGCACTGAAATATAT----------------ATacacac------------------------------------------------------- i manLeu1.NW_012104388v1 C 0 C 0 s calJac3.chr3 53042151 25 - 190850796 ttaatcactgaaatatatacacaag------------------------------------------------------------------------ i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8201621 25 - 15139346 TTAATCACTGAAatatatacacacg------------------------------------------------------------------------ i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9403361 23 - 11631747 TTAATCACTGAAATATATATACA-------------------------------------------------------------------------- i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I e mm10.chr5 76438995 24 + 151834684 I e dasNov3.JH568349 4119018 491 - 5279953 I e cebCap1.NW_016107439v1 6988327 59 - 7304997 I e otoGar3.GL873602 8637523 43 + 8790067 I e canFam3.chr13 48023716 46 + 63241923 I e colAng1.NW_012119221v1 1335019 29 + 1448899 I a score=227.000000 s hg38.chr4_KI270787v1_alt 87797 19 + 111943 tacacatatatatgcacac s panTro5.chr4 119655071 19 - 194502333 tacacatatatatacacat i panTro5.chr4 I 38 C 0 s panPan2.chr4 121068900 19 - 195804263 tacacatatatatacacat i panPan2.chr4 I 24 C 0 s rheMac8.chr5 111580659 5 - 190429646 --------------cacac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110749844 2 - 189454096 -----------------ac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13316270 2 + 26754465 -----------------ac i macNem1.NW_012012466v1 C 0 C 0 s chlSab2.chr7 122927164 2 - 135778131 -----------------ac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039637 2 + 2427316 -----------------ac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1335048 19 + 1448899 TAAGCATGGAAATacacac i colAng1.NW_012119221v1 I 29 C 0 s calJac3.chr3 53042176 7 - 190850796 ------------tacacac i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8201646 7 - 15139346 ------------tacatac i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9403384 7 - 11631747 ------------TACACAC i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I e mm10.chr5 76438995 24 + 151834684 I e dasNov3.JH568349 4119018 491 - 5279953 I e cebCap1.NW_016107439v1 6988327 59 - 7304997 I e otoGar3.GL873602 8637523 43 + 8790067 I e canFam3.chr13 48023716 46 + 63241923 I e nomLeu3.chr9 69367283 0 - 118206036 C e cerAty1.NW_012001307v1 4217752 0 - 5137665 C e gorGor5.CYUI01014963v1 4497932 0 - 17550833 C a score=23498.000000 s hg38.chr4_KI270787v1_alt 87816 8 + 111943 acatatac s panTro5.chr4 119655090 8 - 194502333 acatatac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121068919 8 - 195804263 acatatac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497932 2 - 17550833 ------ac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367283 2 - 118206036 ------ac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580664 8 - 190429646 acacacac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110749846 8 - 189454096 acacacac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13316272 8 + 26754465 acacacac i macNem1.NW_012012466v1 C 0 C 0 s chlSab2.chr7 122927166 8 - 135778131 acacacac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039639 8 + 2427316 acacacat i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1335067 8 + 1448899 acacacac i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53042183 8 - 190850796 atagatac i calJac3.chr3 C 0 I 4 s saiBol1.JH378162 8201653 8 - 15139346 atagacac i saiBol1.JH378162 C 0 I 4 s aotNan1.NW_018493494v1 9403391 3 - 11631747 ATA----- i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76439019 8 + 151834684 acagatgg i mm10.chr5 I 24 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I e dasNov3.JH568349 4119018 491 - 5279953 I e cebCap1.NW_016107439v1 6988327 59 - 7304997 I e otoGar3.GL873602 8637523 43 + 8790067 I e canFam3.chr13 48023716 46 + 63241923 I e cerAty1.NW_012001307v1 4217752 0 - 5137665 C a score=42765.000000 s hg38.chr4_KI270787v1_alt 87824 4 + 111943 acaC s panTro5.chr4 119655098 4 - 194502333 acac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121068927 4 - 195804263 acac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497934 4 - 17550833 acac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367285 4 - 118206036 acac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580672 4 - 190429646 acac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110749854 4 - 189454096 acac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13316280 4 + 26754465 acac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4217752 4 - 5137665 acac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122927174 4 - 135778131 acac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039647 4 + 2427316 acac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1335075 4 + 1448899 acac i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53042195 4 - 190850796 acac i calJac3.chr3 I 4 C 0 s saiBol1.JH378162 8201665 4 - 15139346 acac i saiBol1.JH378162 I 4 C 0 s cebCap1.NW_016107439v1 6988386 4 - 7304997 ACAC i cebCap1.NW_016107439v1 I 59 C 0 s mm10.chr5 76439027 4 + 151834684 ccac i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I e dasNov3.JH568349 4119018 491 - 5279953 I e aotNan1.NW_018493494v1 9403394 0 - 11631747 C e otoGar3.GL873602 8637523 43 + 8790067 I e canFam3.chr13 48023716 46 + 63241923 I a score=20447.000000 s hg38.chr4_KI270787v1_alt 87828 2 + 111943 AC s panTro5.chr4 119655102 2 - 194502333 aC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121068931 2 - 195804263 aC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497938 2 - 17550833 ac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367289 2 - 118206036 ac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580676 2 - 190429646 ac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110749858 2 - 189454096 ac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13316284 2 + 26754465 ac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4217756 2 - 5137665 ac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122927178 2 - 135778131 ac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039651 2 + 2427316 ac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1335079 2 + 1448899 ac i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53042199 2 - 190850796 at i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8201669 2 - 15139346 at i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6988390 2 - 7304997 AT i cebCap1.NW_016107439v1 C 0 C 0 s otoGar3.GL873602 8637566 2 + 8790067 ac i otoGar3.GL873602 I 43 C 0 s mm10.chr5 76439031 2 + 151834684 ac i mm10.chr5 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I e dasNov3.JH568349 4119018 491 - 5279953 I e aotNan1.NW_018493494v1 9403394 0 - 11631747 C e canFam3.chr13 48023716 46 + 63241923 I a score=49462.000000 s hg38.chr4_KI270787v1_alt 87830 4 + 111943 ACAC s panTro5.chr4 119655104 4 - 194502333 ACAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121068933 4 - 195804263 ACAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497940 4 - 17550833 acac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367291 4 - 118206036 acac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580678 4 - 190429646 acac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110749860 4 - 189454096 acac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13316286 4 + 26754465 acac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4217758 4 - 5137665 acac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122927180 4 - 135778131 acac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039653 4 + 2427316 acac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1335081 4 + 1448899 acac i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53042201 4 - 190850796 acac i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8201671 4 - 15139346 acaC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6988392 4 - 7304997 ACAC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9403394 3 - 11631747 -CAC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8637568 4 + 8790067 aaag i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76439033 4 + 151834684 acac i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4119509 4 - 5279953 ataa i dasNov3.JH568349 I 491 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I e canFam3.chr13 48023716 46 + 63241923 I a score=2100708.000000 s hg38.chr4_KI270787v1_alt 87834 177 + 111943 Aaaga---------gcatactctaaaaactaaaggaccttgctttaaaaatgtgaataaattcagctttgtgaaaaatatacacatacactgtccatatcattctcattttac-ct--gt-ttggtgaagacCAATTGGAGAAACTCAGTGAT----------GCAT---------TTGAGAATCGCTGACAGTCTCCCCCCGG-ATTAC s panTro5.chr4 119655108 177 - 194502333 Aaaga---------gcatactctaaaaactaaaggaccttgctttaaaaatgtgaataaattcagctttgtgaaaaatatacacatacactgtccatatcattctcattttac-ct--gt-ttggtgaagacCAATTGGAGAAACTCAGTGAT----------GCAT---------TTGAGAATCGCTGACAGTCTCCCCCTGG-ATTAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121068937 177 - 195804263 Aaaga---------gcatactctaaaaactaaaggaccttgctttaaaaatgtgaataaattcagctttgtgaaaaatatacacatacactgtccatatcattctcattttac-ct--gt-ttggtgaagacCAATTGGAGAAACTCAGTGAT----------GCAT---------TTGAGAATCGCTGACAGTCTCCCCCTGG-ATTAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4497944 177 - 17550833 aaaga---------gcatactctaaaaactaaaggaccttgctttaaaaatgtgaataaattcagctttgtgaaaaatatacacatacactgtccatatcattctcattttac-cT--GT-TTGGTGAAGATCAATTGGAGAAACTCAGTGAT----------GCAT---------TTGAGAATCGCTGACAGTCTCCCCCCAG-ATTAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367295 177 - 118206036 aaaga---------gcataatctaaaaactaaaggattttgccttaaaaatgtgaataaattcagctttgtgaaaaatatacacatacactgtccgtatcattctcattttac-cc--gt-ttggtgaagacCAGTCGGAGAAACTCAGTGGT----------GCAT---------TTGAGAATCGCTGACAGTCTCCCCCCGG-ATTAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580682 177 - 190429646 acaGA---------Gcataatctaaaaactaaaggaccttgctttaaaaatgtgaataaattcagttttgtgaaaaatatacacatacactgtccatatcattctcgttttac-ct--gt-ttggtgaagaccagtcagggaaactcagtggc----------gcat---------ttgagaatcactgACAGTCTCCCCCCGG-ATTAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110749864 177 - 189454096 acaGA---------Gcataatctaaaaactaaaggaccttgctttaaaaatgtgaataaattcagttttgtgaaaaatatacacatacactgtccatatcattctcgttttac-ct--gt-ttggtgaagaccagtcagggaaactcagtggc----------gcat---------ttgagaatcactgACAGTCTCCCCCCGG-ATTAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13316290 177 + 26754465 acaGA---------Gcataatctaaaaactaaaggaccttgctttaaaaatgtgaataaattcagttttgtgaaaaatatacacatacactgtccatatcattctcgttttac-ct--gt-ttggtgaagaccagtcagggaaactcagtggc----------gcat---------ttgagaatcactgACAGTCTCCCCCCGG-ATTAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4217762 177 - 5137665 aaaga---------gcataatctaaaaactaaaggaccttgctttaaaaatgtgaataaattcagttttgtgaaaaatatacacatacactgtccatatcattctcattttac-ct--gt-ttggtgaagaccagtcagggaaactcagtggc----------gcat---------ttgagaatcactgACAGTCTCCCCGCGG-ATTAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122927184 177 - 135778131 acaGA---------Gcataatctaaaaactaaaggaccttgctttaaaaatgtgaataaattcagttttgtgaaaaatatacacatacactgtccatatcattctcattttac-ct--gt-ttggtgaagaccagtcagagaaactcagtggt----------gcat---------ttgagaatcactgACAGTCTCCCCCCGG-ATTAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039657 177 + 2427316 aaaga---------gcataatctaaaaactaaagaaccttgctttaaaaatgtgaataaattcagttttgtgaaaaatatacacatacactgtccatatcattctcattttac-ct--gt-ttggtgaagaccagtcagggaaactcagtggc----------gcat---------ttgagaatcactgACAGTCTCCCCCCGG-ATTAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1335085 177 + 1448899 aaaga---------gcataatctaaaaactaaaggaccttactttaaaaatgcgaataaattcagttttgtgaaaaatatacacatacaccgtccatatcattctcattttac-ct--gt-ttggtgaagatcagtcagagaaactcagcagt----------gcat---------ttgagaatcactgACAGTCTCCCCCCGG-ATTAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53042205 176 - 190850796 aAACA---------Gcgtaatctaaaaactgaaggattttgctttaaaaatgtaaataaattcagctttgtg-aaaatgtgcacatacactgtctgtatcattctcattttac-ct--gt-ttgatgaagaccagtcagagaaactcagtggt----------gcat---------ttgagaatcactgACAGCCTTTCCCGGG-ATTAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8201675 177 - 15139346 AAACA---------Gcgtaatctaaaaactgaaggactttgctttaaaaatgcgaataaatttagctttgtgaaaaatgtgcacatacagtgtctgtattgttctcattttac-ct--gt-ttggtgaagacCAGTCAGAGAAACTCAGTGGT----------GCAT---------TTGAGAATCGCTCACAGCCTTCCCTGGG-ATTAC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6988396 177 - 7304997 AAACA---------Gcgtaatctaaaaactgaaggactttgctttaaaaatgtgaataaattcagctttgtgaaaaatgtgcacatacactgtctgtatcattctcattttac-cT--GT-TTGTTGAAAACCAATCAGAGAAACTCAGTGGT----------GCAT---------TTGAGAATCGCTGACAGCCTTCCCCGGG-ATTAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9403397 177 - 11631747 AAACA---------GCGTAATCTAAAAACTGAAGGACTTTGCTTTAAAAATGTGAATAAACTCAGCTTTGTGAAAAATGTGCACATACACTGTCTGTATCATTCTCATTTTAC-CT--GT-TTGGTGAAGACCAGTCAGAGAAACTCAGTGGT----------GCAT---------TTGAGAATTGCTGACAGCCTTCCCCGGG-ATTAC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8637572 178 + 8790067 agggg---------gtacaattgcaaagagaaagggtcttgactttaaaatgcaaataaattcagctttgtgaaaaagg------tacattgtctttattattctcatttggc-ttcaga-ttggtg---accagtcagagaatttgagtggcatttgaactagcat---------ttgagaaccaatgACATCCTCCCC--GG-GTTCT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76439037 183 + 151834684 aaagaatagaaaggacataatccggaaagtaaaga--tgttatttctgaatgggaataaatgtggccctgtgaag--------cagatgctgttc---ttattctcatttggc-cc--ctgctggtcaaggtcacctggagggtaccagtgat----------gcagggactaccacaggggaccactgACAACCTCCCCTTGT-GTTTT i mm10.chr5 C 0 C 0 s canFam3.chr13 48023762 182 + 63241923 aaaga---------gcaccccctaaaacacagaggaccttgttttaaaaatgtgagtaaattcagctttgtgagaaaaa---atgtacaccatctatctctttctcacttgcctct--ga-cagctgaaaaacagtcacagaataccaatggt-gcataactagcat---------ttgagatcccctgAAAATGTCTCTGTGG-AGT-- i canFam3.chr13 I 46 C 0 s dasNov3.JH568349 4119513 170 - 5279953 gaagg---------acatgatctgaaaaatagtggaccttgttttgagattttgaataaattcagctttgggaaaaa------cacgcattgtccctatctttctcattttgt-ct-----ctggtaaag---agctagtgggacatggtatg-----aaccagcat---------cgacgaaccactgACAACCTCTCCTCGATATT-- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801034 249 + 3286835 I a score=767832.000000 s hg38.chr4_KI270787v1_alt 88011 56 + 111943 CTCTGTGACCTCAG--AACACCAAGGGCCTACG-GCAGAACTGAGGG--CTCCATTCTTCT s panTro5.chr4 119655285 56 - 194502333 CTCTGTGACCTCAG--AACACCAAGGGCCTACG-GCAGAACTGAGGG--CTCCATTCTTCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121069114 56 - 195804263 CTCTGTGACCTCAG--AACACCAAGGGCCTACG-GCAGAACTGAGGG--CTCCATTCTTCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4498121 56 - 17550833 CTCTGTGACCTCAG--AACACCAAGGGCCTACG-GCAGAACTGAGGG--CTCCATTCTTCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367472 50 - 118206036 CTCTGTGACCTCAG--AACACC---TGCCTATG-GCAAAACTGAGGG--CTCCATTCT--- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580859 56 - 190429646 CTCTGTGACCTCAG--AACACCAAGGGCCTATG-GCAGAACTGAGGG--CTCCATCCTTCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110750041 56 - 189454096 CTCTGTGACCTCAG--AACACCAAGGGCCTATG-GCAGAACTGAGGG--CTCCATCCTTCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13316467 56 + 26754465 CTCTGTGACCTCAG--AACACCAAGGGCCTATG-GCAGAACTGAGGG--CTCCATCCTTCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4217939 56 - 5137665 CTCTGTGACCTCAG--AACACCAAGGGCCTATG-GCAGAACTGAGGG--CTCCATCCTTCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122927361 56 - 135778131 CTCGGTGACCTCAG--AACACCAAGGGCCTATG-GCAGAACTGAGGG--CTCCATCCTTCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039834 56 + 2427316 CTCTGTGACCTCAG--AACACCAAGGGCCTATG-GCAGAACTGAGGG--CTCCATCCTTCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1335262 56 + 1448899 CTCTGTGACCTCAG--AACACCAAGGGCCTATG-GCAGAACTGAGGG--CTCCATCCTTCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53042381 56 - 190850796 CTCTGTGACCTCAG--AACACCAAGAGCCTGTG-GCAGAACAGAGGG--CTCCATCCTTCT i calJac3.chr3 C 0 I 3 s saiBol1.JH378162 8201852 58 - 15139346 CTCTGTGACCTCAGCAAACACCAAGAGCCTGCA-GCAGAACAGAGGG--CTGCGTCTTTCT i saiBol1.JH378162 C 0 I 3 s cebCap1.NW_016107439v1 6988573 56 - 7304997 CTCTGTGACCTCAG--AACACCAAGAGCCTGCG-GCAGGACAGAGGG--CTCCATCCTTCT i cebCap1.NW_016107439v1 C 0 I 3 s aotNan1.NW_018493494v1 9403574 56 - 11631747 CTCTGTGTCCTCAG--AACACCAAGAGCCTGCG-GCAGAACAGAGGG--CTCCATCCTTCT i aotNan1.NW_018493494v1 C 0 I 21 s micMur3.chrUn_NW_017968520v1 1801283 57 + 3286835 CTCTGTGGCCTCAG--AACACCAAGGACCTAAGAGCAGAACTGAGGC--CTCCATCCTTCT i micMur3.chrUn_NW_017968520v1 I 249 I 19 s otoGar3.GL873602 8637750 59 + 8790067 CTCTGTGGCCTCAC--ACCACTAAAGACCTGAGAGTAGAACTGAGGCATCCCCTTCCTTCT i otoGar3.GL873602 C 0 I 3 s mm10.chr5 76439220 56 + 151834684 CTCTGTGACCTCAG--GACACCCAGACTCTAGT-AAGCCACCTGATG--CCTCATTCTGCT i mm10.chr5 C 0 C 0 s canFam3.chr13 48023944 56 + 63241923 TTCTGTGACCCTGT--AACAGCATGGACCCAAAAGTAGAACTGAGA---TTCCATCCTTCT i canFam3.chr13 C 0 I 3 s dasNov3.JH568349 4119683 55 - 5279953 CTCCGTGAGCCCAG--AACCCCAAAACCCCAAA-GCAGGACCAAGA---CTCCATCCTTCT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I a score=38328.000000 s hg38.chr4_KI270787v1_alt 88067 4 + 111943 GGTT s panTro5.chr4 119655341 4 - 194502333 GGTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121069170 4 - 195804263 GGTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4498177 4 - 17550833 GGTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367522 2 - 118206036 --TT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580915 4 - 190429646 GGTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110750097 4 - 189454096 GGTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13316523 4 + 26754465 GGTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4217995 4 - 5137665 GGTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122927417 4 - 135778131 GGTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039890 4 + 2427316 GGTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1335318 4 + 1448899 GGTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53042440 4 - 190850796 GGCT i calJac3.chr3 I 3 C 0 s saiBol1.JH378162 8201913 4 - 15139346 GGCT i saiBol1.JH378162 I 3 C 0 s cebCap1.NW_016107439v1 6988632 4 - 7304997 GGCT i cebCap1.NW_016107439v1 I 3 C 0 s otoGar3.GL873602 8637812 4 + 8790067 GATG i otoGar3.GL873602 I 3 I 13 s mm10.chr5 76439276 3 + 151834684 -GCT i mm10.chr5 C 0 I 1 s canFam3.chr13 48024003 4 + 63241923 GGTG i canFam3.chr13 I 3 C 0 s dasNov3.JH568349 4119738 4 - 5279953 AGCT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801340 19 + 3286835 I e aotNan1.NW_018493494v1 9403630 21 - 11631747 I a score=29453.000000 s hg38.chr4_KI270787v1_alt 88071 2 + 111943 GG s panTro5.chr4 119655345 2 - 194502333 GG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121069174 2 - 195804263 GG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4498181 2 - 17550833 GG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367524 2 - 118206036 GT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580919 2 - 190429646 GG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110750101 2 - 189454096 GG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13316527 2 + 26754465 GG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4217999 2 - 5137665 GG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122927421 2 - 135778131 GG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039894 2 + 2427316 GG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1335322 2 + 1448899 GG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53042444 2 - 190850796 GG i calJac3.chr3 C 0 I 12 s saiBol1.JH378162 8201917 2 - 15139346 GG i saiBol1.JH378162 C 0 I 12 s cebCap1.NW_016107439v1 6988636 2 - 7304997 GG i cebCap1.NW_016107439v1 C 0 I 12 s micMur3.chrUn_NW_017968520v1 1801359 2 + 3286835 GG i micMur3.chrUn_NW_017968520v1 I 19 C 0 s otoGar3.GL873602 8637829 2 + 8790067 GA i otoGar3.GL873602 I 13 C 0 s mm10.chr5 76439280 2 + 151834684 GA i mm10.chr5 I 1 I 12 s canFam3.chr13 48024007 2 + 63241923 GG i canFam3.chr13 C 0 I 11 s dasNov3.JH568349 4119742 2 - 5279953 GG i dasNov3.JH568349 C 0 I 12 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e aotNan1.NW_018493494v1 9403630 21 - 11631747 I a score=1024982.000000 s hg38.chr4_KI270787v1_alt 88073 67 + 111943 TCTCAAAATT-AGGTTCTTAAGAACCAGATGATGTGATCAGATCAGAAAACACAGAAGGTCTGCGAAG s panTro5.chr4 119655347 67 - 194502333 TCTCAAAATT-AGGTTCTTAAGAACCAGATGATGTGATCAGATCAGAAAACACAGAAGGTCTGCGAAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121069176 67 - 195804263 TCTCAAAATT-AGGTTCTTAAGAACCAGATGATGTGATCAGATCAGAAAACACAGAAGGTCTGCGAAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4498183 67 - 17550833 TCTCAAAATT-AGGTTCTTAAGAACCAGATGATGTGATCAGATCAGAAAACACAGAAGGTCTGCGAAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367526 67 - 118206036 TCTCAAAATT-AGGTTCTTAAGAACCAGATGATGTGATCAGATCAGAAAACACAGAAGGTCTGCGAAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580921 67 - 190429646 TCTCAAAATT-AGATTCTTAAGAACCAGATGACGTGATCAGATCAGAAAACACAGAAGTTCTGCGAAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110750103 67 - 189454096 TCTCAAAATT-AGATTCTTAAGAACCAGATGACGTGATCAGATCAGAAAACACAGAAGTTCTGCGAAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13316529 67 + 26754465 TCTCAAAATT-AGATTCTTAAGAACCAGATGACGTGATCAGATCAGAAAACACAGAAGGTCTGCGAAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4218001 67 - 5137665 TCTCAAAATT-AGATTCTTAAGAACCAGATGACGTGATCAGATCAGAAAACACAGAAGGTCTGCGAAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122927423 67 - 135778131 TCTCAAAATT-AGATTCTTAGGAACCAGATGACGTGATCAGATCAGAAAACACAGAAGGTCTGCGAAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039896 67 + 2427316 TCTCAAAATT-AGATTCTTAAGAACCAGATGATGTGACCAGATCAGAAAACACAGAAGGTCTGCGAAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1335324 67 + 1448899 TCTCAAAATT-AGATTCTTAAGAACCAGATGACGTGATCAGATCAGAAAACACAGAAGGTCTGCGAAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53042458 67 - 190850796 TCTCCAAATT-AGTTTCTTAAGAACCGGATGATGTGATCAGATCAGAAAACATAGAAGGTCTGCAAAG i calJac3.chr3 I 12 C 0 s saiBol1.JH378162 8201931 67 - 15139346 TCTCCAAATT-AGTTTCTTAAGAACCAGATGATGTGATCAGAACAGAAAACACAGAAGGTCTGCAAAG i saiBol1.JH378162 I 12 C 0 s cebCap1.NW_016107439v1 6988650 67 - 7304997 TCTCCAAATT-AGTTTCTTAAGAACCAGATGATGTGATCAGATCAGAAAACATAGAAGGTCTGCAAAG i cebCap1.NW_016107439v1 I 12 C 0 s aotNan1.NW_018493494v1 9403651 67 - 11631747 TCTCCAAATT-AGTTTCTTAAGAACCAGATGATGTGATCAGATCAGAAAACATAGAAGGTCTGCGAAG i aotNan1.NW_018493494v1 I 21 C 0 s micMur3.chrUn_NW_017968520v1 1801361 67 + 3286835 TCTCAAAATT-AGTCTCTTAAGAATCAGACAATGTGATCGGATCAGAAAACCAAGAAGGTCTGTGAAG i micMur3.chrUn_NW_017968520v1 C 0 I 65 s otoGar3.GL873602 8637831 67 + 8790067 TCTCAAAATT-AGTCTCTTAAGAAGCAGACAGTGTGATCAGATCAGAAAACCCAGAAGGTCTGAGAAA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76439294 65 + 151834684 TTTTAAAATT-AATGTCCTAGGAACCAGATGACGTAATCTGACCAGATGACTCCAAAGATAT--AAAG i mm10.chr5 I 12 C 0 s canFam3.chr13 48024020 57 + 63241923 TCTCAAAATTAAGTCTCTTAAGAACCAGA-----------AATCAGAAAACACAGAATGTCTGTGGAA i canFam3.chr13 I 11 C 0 s dasNov3.JH568349 4119756 61 - 5279953 TCTCAAAATT-TGTCTCTTA------AGATGACGTGACCGGATTAGAAAACAAAGAAGATCTGTGAGA i dasNov3.JH568349 I 12 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I a score=185413.000000 s hg38.chr4_KI270787v1_alt 88140 14 + 111943 AGCAGCCTGAGAGG s panTro5.chr4 119655414 14 - 194502333 AGCAGCCTGAGAGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121069243 14 - 195804263 AGCAGCCTGAGAGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4498250 14 - 17550833 AGCAGCCTGAGAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367593 14 - 118206036 AGCAGCCTAAGAGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111580988 14 - 190429646 AGCAGCCTGAGAGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110750170 14 - 189454096 AGCAGCCTGAGAGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13316596 14 + 26754465 AGCAGCCTGAGAGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4218068 14 - 5137665 AGCAGCCTGAGAGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122927490 14 - 135778131 AGCAGCCTGAGAGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2039963 14 + 2427316 AGCAGCCTGAGAGG i manLeu1.NW_012104388v1 C 0 I 39 s colAng1.NW_012119221v1 1335391 14 + 1448899 AGCAGTCTGAGAGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53042525 14 - 190850796 AGCAGCCTGAGAGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8201998 14 - 15139346 AGCAGCCTGAGAGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6988717 14 - 7304997 AGCATCCTAAGAGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9403718 14 - 11631747 AGCAGCCTGAGAGG i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8637898 13 + 8790067 AGGAGT-TGAGTGG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76439359 14 + 151834684 AGAGGTGTGAGCGT i mm10.chr5 C 0 C 0 s canFam3.chr13 48024077 14 + 63241923 AATGACCAGAGTGG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4119817 14 - 5279953 AGTGGCCTGAGAGG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801428 65 + 3286835 I a score=269312.000000 s hg38.chr4_KI270787v1_alt 88154 33 + 111943 AAGCCCATGGTTC---------GTGATTATCATAC-AAGGTGT s panTro5.chr4 119655428 33 - 194502333 GAGCCCGTGGTTC---------GTGATTATCATAC-AAGGTGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121069257 33 - 195804263 GAGCCCGTGGTTC---------GTGATTATCATAC-AAGGTGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4498264 33 - 17550833 GAGCCCGTGGTTC---------GTGATTATCATAC-AAGGTGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367607 33 - 118206036 GAGCCCTTGGTTC---------GTGATTATCACAC-AAGGTGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111581002 34 - 190429646 GAGCCCTTGGTTC--------CGTGATTTTCACAC-AAGGTGT i rheMac8.chr5 C 0 I 5 s macFas5.chr5 110750184 34 - 189454096 GAGCCCTTGGTTC--------CGTGATTTTCACAC-AAGGTGT i macFas5.chr5 C 0 I 2 s macNem1.NW_012012466v1 13316610 34 + 26754465 GAGCCCTTGGTTC--------CGTGATTTTCACAC-AAGGTGT i macNem1.NW_012012466v1 C 0 I 5 s cerAty1.NW_012001307v1 4218082 34 - 5137665 GAGCCCTTGGTTC--------TGTGATTTTCACAC-AAGGTGT i cerAty1.NW_012001307v1 C 0 I 5 s chlSab2.chr7 122927504 34 - 135778131 GAGCCCTTGGTTC--------CGTGATTTTCACAC-AAAGTGT i chlSab2.chr7 C 0 C 0 s colAng1.NW_012119221v1 1335405 34 + 1448899 GAGCCCTCGGTTC--------CGTGATTTTCACAC-AAGGTGT i colAng1.NW_012119221v1 C 0 I 5 s calJac3.chr3 53042539 31 - 190850796 GAGCCCTTGGTTC---------ACGATTTTCACAC---GGTAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8202012 33 - 15139346 GAGCCCTTGGTTC---------ACGATTTTCACAC-AAGGTAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6988731 33 - 7304997 GAGCCCTTGGTTC---------ACGATTTTCACAC-AAGGTAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9403732 33 - 11631747 GAGCCCTTGGTTC---------ACGATTTTCACAC-AAGGTAT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8637911 23 + 8790067 GAGCTCTCAGTTC---------GTGATTGTCA----------- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76439373 25 + 151834684 CAACCC----------------ATGAGCTTCACCTTAACGT-- i mm10.chr5 C 0 I 1 s canFam3.chr13 48024091 33 + 63241923 GAGCCCTCAATTT---------ACGATTTTCATGC-AAGATGC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4119831 42 - 5279953 GAATCCTCAGCATGGGCTTGCAATGCTTTTCATGC-AAGATGC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801428 65 + 3286835 I e manLeu1.NW_012104388v1 2039977 39 + 2427316 I a score=-55.000000 s hg38.chr4_KI270787v1_alt 88187 1 + 111943 -A s panTro5.chr4 119655461 1 - 194502333 -A i panTro5.chr4 C 0 C 0 s panPan2.chr4 121069290 1 - 195804263 -A i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4498297 1 - 17550833 -A i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367640 1 - 118206036 -A i nomLeu3.chr9 C 0 C 0 s chlSab2.chr7 122927538 1 - 135778131 -A i chlSab2.chr7 C 0 I 4 s calJac3.chr3 53042570 1 - 190850796 -A i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8202045 1 - 15139346 -A i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6988764 1 - 7304997 -A i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9403765 1 - 11631747 -A i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48024124 1 + 63241923 -A i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4119873 1 - 5279953 T- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801428 65 + 3286835 I e mm10.chr5 76439398 1 + 151834684 I e otoGar3.GL873602 8637934 0 + 8790067 C e colAng1.NW_012119221v1 1335439 5 + 1448899 I e manLeu1.NW_012104388v1 2039977 39 + 2427316 I e cerAty1.NW_012001307v1 4218116 5 - 5137665 I e macNem1.NW_012012466v1 13316644 5 + 26754465 I e rheMac8.chr5 111581036 5 - 190429646 I e macFas5.chr5 110750218 2 - 189454096 I a score=60353.000000 s hg38.chr4_KI270787v1_alt 88188 18 + 111943 CACGGTACTCA-AAATATG s panTro5.chr4 119655462 18 - 194502333 CACGGTACCCA-AAATATG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121069291 18 - 195804263 CACGGTACCCA-AAATATG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4498298 17 - 17550833 -ACGGTACTCA-AAATATG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367641 18 - 118206036 CACGGTACTCA-AAATATG i nomLeu3.chr9 C 0 C 0 s calJac3.chr3 53042571 18 - 190850796 CATGGTACTCG-AAATATG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8202046 18 - 15139346 CATGGTACTCG-AAATATA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6988765 18 - 7304997 CACGGTACTTG-AAATACG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9403766 18 - 11631747 CACGGTACTTG-AAATATG i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8637934 18 + 8790067 CTCAGTGCTAA-CCACACG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76439399 19 + 151834684 CACAGTGCTCACCAATATC i mm10.chr5 I 1 C 0 s canFam3.chr13 48024125 19 + 63241923 CATAGCACTCACACATATG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4119874 18 - 5279953 CACAGTAACCACAAGTAG- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e micMur3.chrUn_NW_017968520v1 1801428 65 + 3286835 I e colAng1.NW_012119221v1 1335439 5 + 1448899 I e manLeu1.NW_012104388v1 2039977 39 + 2427316 I e chlSab2.chr7 122927539 4 - 135778131 I e cerAty1.NW_012001307v1 4218116 5 - 5137665 I e macNem1.NW_012012466v1 13316644 5 + 26754465 I e rheMac8.chr5 111581036 5 - 190429646 I e macFas5.chr5 110750218 2 - 189454096 I a score=70667.000000 s hg38.chr4_KI270787v1_alt 88206 15 + 111943 AGCACATCCCTGCCG s panTro5.chr4 119655480 15 - 194502333 AGCACATCCCTGCCG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121069309 15 - 195804263 AGCACATCCCTGCCG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4498315 15 - 17550833 AGCACATCCCTGCCG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367659 15 - 118206036 AGCACATCCCTGCCG i nomLeu3.chr9 C 0 C 0 s calJac3.chr3 53042589 15 - 190850796 AGCACATCCCTGCCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8202064 15 - 15139346 AGCACATCCCTGCCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6988783 15 - 7304997 AGCACATCCCTGCCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9403784 15 - 11631747 AGCACATCCCTGCCA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1801493 15 + 3286835 AGCACGTCCCTGCAG i micMur3.chrUn_NW_017968520v1 I 65 C 0 s otoGar3.GL873602 8637952 15 + 8790067 CCCGTGTCATTGTGG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76439418 10 + 151834684 -----AACACTGCAG i mm10.chr5 C 0 C 0 s canFam3.chr13 48024144 15 + 63241923 AACAAACCACTGCAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4119892 15 - 5279953 GACAGACCACTGCAG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1890159 86 + 4188776 I e colAng1.NW_012119221v1 1335439 5 + 1448899 I e manLeu1.NW_012104388v1 2039977 39 + 2427316 I e chlSab2.chr7 122927539 4 - 135778131 I e cerAty1.NW_012001307v1 4218116 5 - 5137665 I e macNem1.NW_012012466v1 13316644 5 + 26754465 I e rheMac8.chr5 111581036 5 - 190429646 I e macFas5.chr5 110750218 2 - 189454096 I a score=509214.000000 s hg38.chr4_KI270787v1_alt 88221 83 + 111943 TGGCTGAGATACGCCACAGTGACACTTAGTGTGAGGACATCATTTCAGTCTTGAATGAAAGCTATGACTGTTACTTTTAAAAG s panTro5.chr4 119655495 83 - 194502333 TGGCTGAGATACGCCACAGTGACACTTAGTGTGAGGACATCATTTCAGTCTTGAATGAAAGCTATGACTGTTACTTTTAAAAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121069324 83 - 195804263 TGGCTGAGATACGCCACAGTGACACTTAGTGTGAGGACATCATTTCAGTCTTGAATGAAAGCTATGACTGTTACTTTTAAAAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4498330 83 - 17550833 TGGCTGAGATATGCCACAGTGACACTTAGTGTGAGGACATCATTTCAGTCTTGAATGAAAGCTATGACTGTTACTTTTAAAAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367674 83 - 118206036 TGGCTGAGATATGCCACAGTGACACTTAGTGTGAAGACATCACTTCAGTCTTGAATGAAAGCTATAACTGTTACTTTTAAAAC i nomLeu3.chr9 C 0 C 0 s calJac3.chr3 53042604 83 - 190850796 TAGCTGAGATATACCACAGTGACACTTAGTGTGAGGATATCATTTCAGCCTTGAATGAAACTCTTGACTGTTACTTTTAAAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8202079 83 - 15139346 TAGCTGAGATACATCACAGTGACACTTAGTGTGAGGACATCACTTCAGCCTTGAATGAAAGTCATGACTGTTACTTTTAAAAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6988798 83 - 7304997 TAGCTGAGATACACCACAGTGACACTTAGTGTGAGGACATCATTTCATCCTTGAATGAAAATCATGACTGTTACTTTTAAAAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9403799 81 - 11631747 TAGCTGAGATACGTCACAGTG--ACTTAGTGTGAGGACATCATTTCAGCCTTGAATGAAAGTCATGACTGTTACTTTTAAAAG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1801508 83 + 3286835 TGGCTGAGGTATACCATAGTGATGCTTAGTGTAAGGCTATAATTTCAGTCTTGCATGAAACTGATGACTGTTACTTTAAAAAG i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1890245 83 + 4188776 TGGCTGGGATATACCACAGTGTCGCTTAGTGTAAGGCTAAAATTTCAGTCCTGAATGAAGCTGATGACTGTTACTTTAAAAAG i proCoq1.NW_012140747v1 I 86 C 0 s otoGar3.GL873602 8637967 83 + 8790067 TGACTGAGCTCCTCGTTGATGGCGCTTAGTGTAAGGCTGTGATTTCGGTTCTGAATGAAACTGATGACTGTTACTTTAAAAAG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76439428 72 + 151834684 TGAATAAGATATGCC--AGTGATGCTTC-TGAGATGGCATCCTCTGGAC--------AAACTGGTGACTGCTACCTTTTAAAG i mm10.chr5 C 0 C 0 s canFam3.chr13 48024159 83 + 63241923 TCTTTGAGAAACAGTACAGTGACACTCACTGTAAGGCTATAATTTCAGTCTTGAATGAAACTGATGACTATTATTTTAAAAAG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4119907 82 - 5279953 TCGCTCAGACACACCA-AGTGACATTTATTGAAAGGCTGTAATTTCAGTCTTCAATGAGAGAGATGACTGTTATTTTGAAAAG i dasNov3.JH568349 C 0 C 0 e colAng1.NW_012119221v1 1335439 5 + 1448899 I e manLeu1.NW_012104388v1 2039977 39 + 2427316 I e chlSab2.chr7 122927539 4 - 135778131 I e cerAty1.NW_012001307v1 4218116 5 - 5137665 I e macNem1.NW_012012466v1 13316644 5 + 26754465 I e rheMac8.chr5 111581036 5 - 190429646 I e macFas5.chr5 110750218 2 - 189454096 I a score=16965.000000 s hg38.chr4_KI270787v1_alt 88304 3 + 111943 GAT s panTro5.chr4 119655578 3 - 194502333 GAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121069407 3 - 195804263 GAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4498413 3 - 17550833 GAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367757 3 - 118206036 GAT i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110750220 3 - 189454096 GAC i macFas5.chr5 I 2 C 0 s calJac3.chr3 53042687 3 - 190850796 GAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8202162 3 - 15139346 GAC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6988881 3 - 7304997 GAC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9403880 3 - 11631747 GAC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1801591 3 + 3286835 AAC i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1890328 3 + 4188776 AAC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8638050 3 + 8790067 AAT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76439500 3 + 151834684 CAC i mm10.chr5 C 0 I 46 s canFam3.chr13 48024242 3 + 63241923 AAC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4119989 3 - 5279953 AAC i dasNov3.JH568349 C 0 C 0 e colAng1.NW_012119221v1 1335439 5 + 1448899 I e manLeu1.NW_012104388v1 2039977 39 + 2427316 I e chlSab2.chr7 122927539 4 - 135778131 I e cerAty1.NW_012001307v1 4218116 5 - 5137665 I e macNem1.NW_012012466v1 13316644 5 + 26754465 I e rheMac8.chr5 111581036 5 - 190429646 I a score=6200334.000000 s hg38.chr4_KI270787v1_alt 88307 388 + 111943 ATGAAATGCAAAACGAAA------ATATAAGATTAACCCTA-------------GGA----------------------ACATTATTAGATTTT--CCTGATG-CTAACAGA-TTGGCAGCA--TTTTTTTTCTATTTTGTTTGGTAA-AAA-ATTTGAGTTGCTTATAAATTTATTCTAAAACTCACTGGACACTTTCAGAGGCTGAAGCGAGCAGCCCCA-GTGTTT-AGGGAGTTGTATTTACAA--TACCTACCTACTGTTCCTCTATTTCCA-TTAGAATGCAATTATCCTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTTTAGTCCataaataataaatcaaatata--atatttaaaaagaaAACCACATCCTATATATCACTGTATTTCTGATG-----TTTTTTTCATAGGACATTTGA s panTro5.chr4 119655581 384 - 194502333 ATGAAATGCAAAACGAAA------ATATAAGATTAACCCTA-------------GGA----------------------ACATTATTAGATTTT--CCTGATG-CTAACAGA-TTGGCAGCA--TTTTTTTTCTATTTTGTTTGGTAA-AAA-ATTTGAGTTGCTTATAAATTTATTCTAAAACTCACTGGACACTTTCAGAGGCTGAAGCGAGCAGCCCCA-GTGTTT-AGGGAGTTGTATTTACAA--TACCTAC----TGTTCCTCTATTTCCA-TTAGAATGCAATTATCCTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTTTAGTCCataaataataaatcaaatata--atatttaaaaagaaAACTACATCCTATATATCACTGTATTTCTGATG-----TTTTCTTCATAGGACATTTGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121069410 384 - 195804263 ATGAAATGCAAAACGAAA------ATATAAGATTAACCCTA-------------GGA----------------------ACATTATTAGATTTT--CCTGATG-CTAAGAGA-TTGGCAGCA--TTTTTTTTCTATTTTGTTTGGTAA-AAA-ATTTGAGTTGCTTATAAATTTATTCTAAAACTCACTGGACATTTTCAGAGGCTGAAGCGAGCAGCCCCA-GTGTTT-AGGGAGTTGTATTTACAA--TACCTAC----TGTTCCTCTATTTCCA-TTAGAATGCAATTATCCTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTTTAGTCCataaataataaatcaaatata--atatttaaaaagaaAACCACATCCTATATATCACTGTATTTCTGATG-----TTTTTTTCATAGGACATTTGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4498416 386 - 17550833 ATGAAATGCAAAATGAAA------ATATAAGATTAACCCTA-------------GGA----------------------ACATTATTCGATTTT--CCTGATG-CTAACAGA-TTGGCAGCATTTTTTTTTTCTATTTTGTTTGGTAA-AAA-ATTTGAGTTGCTTATAAATTTATTCTAAAACTCACTGGACACTTTCAGAGGCTGAAGCGAGCAGCCCCA-GTGTTT-AGGGAGTTGTATTTACAA--TACCTAC----TGTTCCTCTATTTCCA-TTAGAATGCAATTATCCTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTTTAGTCCataaataataaatcaaatata--atatttaaaaagaaAACCACATCCTATATATCACTGTATTTCTGATG-----TTTTTTTCATAGGACATTTGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69367760 385 - 118206036 ATGAAACGCAAAACGAAA------ATATAAGATTAACACCA-------------GGA----------------------ACATTATTAGATTTT--CCTGATG-CTAACAGA-CTGGCAGCA---ATTTTTTCAATTTTGTTTGGTAA-AAA-ATTTGAGTTGCTTATAAATTTATTCTAAAACTCACTGGACACTTTCAGAGGCTGAAGCGGGCAGCCCCA-GTGTTT-AGGGAGTTGTATTTACACGTTACCTAC----TGTTCCTCTATTTCCA-TTAGAATGCAATTATCCTGCTTG----------GGG--AAGAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTTTAGTCCataaataataaatcaaatata--atatttaaaaagaaAACTGCATCCTATATATCACTGTATTTCTGATG-----TTTTTTTCATGGGATATTTGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111581041 380 - 190429646 ATGAAATGCAAAAAGAAA------ATATTAGATTAACACCA-------------GGA----------------------ACATTATTAGATTTT--CCTGATG-CTAACAGA-CTGGCAGCA---TTTTTTCCTATTTTGTTTGGTAA-ACA-ATTTGAGTTGCTTATAAATTTATTCTAAAACTCACTGGACACTTTCAGAGGCTGAAGCGAGCAG-CCCA-GGGTTT-AGGGAGTTGTGTTTACAA--TACCTAC----TGTCCCTCTACTTCCA-TTAGAATGCAATTACCCTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTCT-GTCCataaataataaatcaaatata--atatttaaaaagaaAACCACATCCTATATATCACTGTATTTCTGAT------TTTTTTTCATAGGACATTTGA i rheMac8.chr5 I 5 C 0 s macFas5.chr5 110750223 380 - 189454096 ATGAAATGCAAAAAGAAA------ATATTAGATTAACACCA-------------GGA----------------------ACATTATTAGATTTT--CCTGATG-CTAACAGA-CTGGCAGCA---TTTTTTCCTATTTTGTTTGGTAA-ACA-ATTTGAGTTGCTTATAAATTTATTCTAAAACTCACTGGACACTTTCAGAGGCTGAAGCGAGCAG-CCCA-GGGTTT-AGGGAGTTGTGTTTACAA--TACCTAC----TGTCCCTCTACTTCCA-TTAGAATGCAATTACCCTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTCT-GTCCataaataataaatcaaatata--atatttaaaaagaaAACCACATCCTATATATCACTGTATTTCTGAT------TTTTTTTCATAGGACATTTGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13316649 380 + 26754465 ATGAAATGCAAAAAGAAA------ATATTAGATTAACACCA-------------GGA----------------------ACATTATTAGATTTT--CCTGATG-CTAACAGA-CTAGCAGCA---TTTTTTCCTATTTTGTTTGGTAA-ACA-ATTTGAGTTGCTTATAAATTTATTCTAAAACTCACTCGACACTTTCAGAGGCTGAAGTGAGCAG-CCCA-GGGTTT-AGGGAGTTGTGTTTACAG--TACCTAC----TGTCCCTCTACTTCCA-TTAGAATGCAATTACCCTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTCT-GTCCATAAATAATAAATCAAATATA--ATATTTAAAAAGAAAACCACATCCTATATATCACTGTATTTCTGAT------TTTTTTTCATAGGACATTTGA i macNem1.NW_012012466v1 I 5 C 0 s cerAty1.NW_012001307v1 4218121 380 - 5137665 ATGAAATGCAAAAAGAAA------ATATTAGATTAACACCA-------------GGA----------------------ACATTATTAGATTTT--CCTGATG-CTAACAGA-CTGGCAGCA---TTTTTTCCTATTTTGTTTGGTAA-ACA-ATTTGAGTTGCTTATAAATTTATTCTAAAACTCACTGGACACTTTCAGAGGCTGAAGCGAGCAG-CCCA-GGGTTT-AGGGAGTTGTGTTTACAA--TACCTAC----TGTCCCTCTACTTCCA-TTAGAATGCAATTACCCTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTCT-GTCCataaataataaatcaaatata--atatttaaaaagaaAACCACATCCTATATATCACTGTATTTCTGAT------ATTTTTTCATAGGACATTTGA i cerAty1.NW_012001307v1 I 5 C 0 s chlSab2.chr7 122927543 380 - 135778131 ATGAAATGTAAAAAGAAA------ATATTAGATTAACACCA-------------GAA----------------------ACATTATTAGATTTT--CCTGATG-CTAACAGA-CTCGCAGCA---TTTTTTCCTATTTTGTTTGGTAA-ACA-ATTTGAGTTGCTTATAAATTTATTCTAAAACTCACTGGACACTTTCAGAGGCTGAAGCGAGCAG-CCCA-GGGTTT-AGGGAGTTGTGTTTACAA--TACCTAC----TGTCCCTCTACTTCCA-TTAGAATGCAATTACCCTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCCTTTCT-GTCCataaataataaatcaaatata--atatttaaaaagaaAACCACATCCTATATATCACTGTATTTCTGAT------TTTTTTTCATAGGACATTTGA i chlSab2.chr7 I 4 C 0 s manLeu1.NW_012104388v1 2040016 380 + 2427316 ATGAAATGCAAAAAGAAA------ATATTAGATTAACACCA-------------GGA----------------------ACATTATTAGATTTT--CCTGATG-CTAACAGA-CTGGCAGCA---TTTTTTCCTATTTTGTTTGGTAA-ACA-ATTTGAGTTGCTTATAAATTTATTCTAAAACTCACTGGACACTTTCAGAGGCTGAAGCGAGCAG-CCCA-GGGTTT-AGGGAGTTGTGTTTACAA--TACCTAC----TGTCCCTCTACTTCCA-TTAGAATGCAATTACCCTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTCT-GTCCATAAATAATAAATCAAATATA--ATATTTAAAAAGAAAACCACATCCTATATATCACTGTATTTCTGAT------TTTTTTTCATAGGACATTTGA i manLeu1.NW_012104388v1 I 39 C 0 s colAng1.NW_012119221v1 1335444 381 + 1448899 ATGAAATGCAAAAATAAA------ATATTAGATTAACACCA-------------GGA----------------------ACATTATTAGATTTT--CCTGATG-CTAACAGA-TTGGCAGCA---TTTTTTCCTATTTTGTTTGGTAA-AAA-AATTGAGTTGCTTATAAATTTATTCTAAAACTCACTGGACACTTTCAGAGGCTGAAGCGAGCAGCCCCA-GTGTTT-AGGGAGTTGTGTTTACAA--TACCTAC----TGTTCCTCTATTTCCA-TTAGAATGCAATTACCCTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTCTAGTCCATAAATAATAAATCAAATATA--ATATTTAAAAAGAAAACCA-ATCCTATATATCACTGTATTTCTGAT------TTTTTTTCATAGGACATTTGA i colAng1.NW_012119221v1 I 5 C 0 s calJac3.chr3 53042690 380 - 190850796 ATGAAATGCAAAAAGAAA------ATACAAGATTAACACCA-------------GGA----------------------ACGTGATTAGATCTT---TTGATG-CTAACATA-TTGGCAGCA----TTTTTTCTATTTTGTTTGGTAA-AAA-ATTTGAATTGCTTATAAATTTATTCGGAAACTCACTGGGTGCTTTCAGAGG-TGAAGTGAGCGGCCCCA-GTGCTT-ACGGAGTTGTGTTTACAA--TACCCAC----TGTTGCTCTATTTCCA-TTAGAATGCAATTATCCTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTCTAGTCCATAAATAATAAATCAAATATA--ATACTTAAAAAGAAAACCACATCCTATATATCACTGTATTTCTGATG-----TTTTTTTCATAGGACATTTGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8202165 382 - 15139346 ATGAAATGCAAAAAGAAA------ACACAAGATTAACACCA-------------GGA----------------------ACATGATTAGATCTT--CCTGATG-CTAACAGA-TTGGCAGCA----TTTTTTCTATTTTGTTTCGTAA-AAATATTTGAATTGCTTATAAATTTATTCTGAAACTCACTGGGTGCTTTCAGAGG-TGAAGTGAGAGGCCCCA-GTGTTT-ACAGAGTTGTATTTACAA--TACCCAC----TCTTCCTCTATTTCCA-TTAGAATGCAATTATCTTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTCTAGTCCataaataataaatcaaatata--atatataaaaaGAAAACCACATCCTATATATCACTGCATTTCTGATG-----TTTTTTTCATAGGACATTTGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6988884 381 - 7304997 ATGAAATGCAAAAAGAAA------ACACAAGATTAACACCA-------------GGA----------------------ACATGATTAGATCTT--CTTGATG-CTAACAGA-TTGGCAGCA----TTTTTTCTATTTTGTTTGGTAA-AAA-ATTTGAATTGCTTATAAATTTATTCTGAAACTCATTGGGCGCTTTCAGAAG-TGAAGTGAGCAGCCCCA-GTGTTT-ACAGAGTTGTATTTACAA--TACCCAC----TGTTCCTCTATTTCCA-TTAGAATGCAATTATCCTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTCTAGTCCataaataataaatcaaatata--atatttaaaaagaaAACCACATCCTATATATCACTGTATTTCTAATG-----TTTTTTTCATAGGACATTTGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9403883 381 - 11631747 ATGAAATGCAAAAAGAAA------ATACAAGATTAACACCA-------------GGA----------------------ATATGATTAGATCTT--CCTGATG-CTAACAGA-TTGACAGCA----TTTTTCCTATTTTGTTTGGTAA-AAA-ATTTGAATTGCTTATAAATTTATTCTGAAACTCACTGGGCGCTTTCAGAGG-TGAAAGGAGTGGCCCCA-GTGTTT-ACAGAGTTGTATTTACAA--TACCTAC----TGTTCCTCTATTTCCA-TTAGAATGCAATTATCCTGCTTG----------GGG--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTTCTTTTCTAGTCCataaataataaatcaaatata--atatttaaaaagaaAACCACATCCTATATATCACTGTATTTCTGATG-----TTTTTTTCATAGGACATTTGA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1801594 370 + 3286835 ATGAAATGCATAAAGAAA------ATATAACATTAACACCA-------------GGA----------------------GAATTACTAAATTTT--CCTGATG-TTAACAGG-TTGGCAGCA-----TCTCTCTATTTTGTTTGGTAA-AGA-ATTTGAGTTGCTTATAAATTTATGCTGAAACCCTTTGGATGCTTTCAG----------AGGCAGCCTCACGTGTTC-AGGGAGTTGTGTTTACAA--TACCTAC----TGTTCCTAT-TTTCCATTTAGAATGCAATTATCCTGCTTT----------GGA--AAAAATAAAGGTCACTGGGTTAATGGAACTCACCT----TTTTTAGTCCATAAATAATACATCAAATATAATATATTTAAAAAGAAAACCACATCCTATATATCATTGTATTTCTGATGT----GTTTTTTCATAAGA-ATTTGA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1890331 379 + 4188776 ATGAAATACATAAAGAAA------ATATGACATTAACACCA-------------GGA----------------------TCATTATTAAATTTT--CCTGATGCTTAACAGG-TCGGCAGCA-----TTTCTCTATTTTGTTTGGTAA-AGA-ATTTGAGTTGCTTATAAATTTATGCTGCAACCCTCTGGATACTTTCAGACGCTGGAGCAAGCAGCCTCGTGTGTTC-AGGGAGTTGTATTTACAA--TACCTAC----TGTTCCTAT-TTTCCATTTAGAATGTAATTATCCTGCTTG----------GGA--AAAAATAAAGGTCACTGGGTTAATGGAGCTCACCT----TTTTTAGTCCATAAATAATACATCAAATATA--ATATTTAAAAAGAAAACCACATCCTACATATCATTGTATTTCTGATGC----TTTTTTTCATAGGA-ATTTGA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8638053 374 + 8790067 ATGAAATGCATAAAGAAA------ATGTAACATTAACACCA-------------GGA----------------------ACATTATTTAATTTT--TTTGATG-CTAATAGG-GTGGCAGCA-----TTTTCCTATTTTATTTGGTAC-AGA-ATTTGAGTTGCTTATAAATTTGTGCTGAAGCCCTGTGA------TGAAGGGCTGAAGCAAGCAGCCCTGCGTGTTC-AGAGAGTTGTATTTACAA--TACCTAC----CATTCCTGCATTTCCATTTAAAATGCAATTATCCTGCTTG----------GGA--AAAAATAAAGGTCACTGGGTTAATGGAGTTCACCT----TTTTAAGTCCATAAATAATACATCAAATATA--ATATTTAAAAAGAAAACCACATCTTATAAATCATTGAATTTCTGATGC----TTTTTTTTACAGGACATTTGA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76439549 426 + 151834684 ctgggagacagaaacaaatctaatctgtgagatcaaggccaacctggtgttcatggagagttccagaccagctggggctacacaatgagaACAC--TCTCTTGTCTGACCCA-CGAGTGACA-----TTTTTCTCTTCTCTTTTGTAAGGAA-ATGTACACTTCTTGTAAATTTGTGCT-AGATACATTGGATGCTTTCAGAGACTGGAATGAACCACCTCA----------TGTGTTGGGTTTATAA--TACTTAC----AGGCCCTATATTTCCA-TTAGGATGCAATTATCTTGCTGGGTTTGGGGGCGGT--GAGAATCAAGGTCACTGGGTTAATGCAGCTCACCTTTCATTTTTAGTCCattaataataaatcaaatata--atatttaaaatGAAAACCGCATCCTATACATCACTGTGCTTCTGACGC----CTTTCTGCGTAGGACCTTTGA i mm10.chr5 I 46 I 414 s canFam3.chr13 48024245 382 + 63241923 ATAATATGCTTGAAGAAA------ATATAAGATTAACACCA--------------GA----------------------ACATTATTAGATTTT--CCCAAGG-CTAACACACTTGGCAGTA-----TTTTTCTAC----TTTGGTAA-AGA-ATTTGAGTTGCTTATAAATTTATGCTGAGCCCCGTTGGATGCTTTCAGAGGCTGAAGCAAGCAGCCCCA-TTCTTTCAGAGGGTTGTGTTTTTAA--TACCTAC----TGTTCCTATATTTCCA-TTAGAATGCAATTATCCTTCTTG----------GGA--AAAAGTAAAGGTCACTGGGTTAATGGAGCTCACCTCTCTTTTTTAGTCCataaataataaatcaaatata--atatttaaaaaG-AAACCACATCCTGCATATCACTGTATTTGTGATGCTTTTTTTTTTCCATAGGACATTTGA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4119992 384 - 5279953 ATGATATGCATAAAGAAA------CTA--AGATTAACACCA-------------GGA----------------------ACATTATTAGATTTTTTCCTGATG-CTAAACCA-TTGGCAGCT-----TTTTCCTATTTTGTTCAATAA-AGA-ATTGGAGTTACTTATACATTTAGGCTGAAATCCACTGGGCACTTTCAGAGGCTGAAGCAAGCAGTCCCA-CTGTTC-AGGGAGTTGTAGTTACAA--TACCTCC----TGTTCCTATATTTCCA-TTAGAAGGCAATTATCTTGCTTT----------GGGAAAAAAATAAAGGTCACTGGGTTAATGGAGCTCACCTTCCTTTTTTAGTCCATAAATAATGAATTGAATATA--ATATTTAAAAAGAAAACCACATCCTGCCTGTCACTGTATTTCTGATGT----TTTTTTTCACAGGCCATTTGA i dasNov3.JH568349 C 0 C 0 a score=196918.000000 s hg38.chr4_KI270787v1_alt 88695 13 + 111943 GTATATGGTGCTT s panTro5.chr4 119655965 13 - 194502333 GTATATGGTGCTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121069794 13 - 195804263 GTATATGGTGCTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4498802 13 - 17550833 GTATATGGTGCTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69368145 13 - 118206036 GTATATGGTGCTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111581421 13 - 190429646 GTATATGACGCTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110750603 13 - 189454096 GTATATGATGCTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13317029 13 + 26754465 GTATATGACACTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4218501 13 - 5137665 GTATATGACGCTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122927923 13 - 135778131 GTATATGACGCTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2040396 13 + 2427316 GTATATGACGCTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1335825 13 + 1448899 GTATATGGCGCTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53043070 13 - 190850796 GTATACAGCGCTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8202547 13 - 15139346 GTATATAGCGCTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6989265 13 - 7304997 GTATATAGCGCTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9404264 13 - 11631747 GTATATAGCTCTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1801964 13 + 3286835 GTATATGGCACTT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1890710 13 + 4188776 GTGTGTGGCACTT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8638427 13 + 8790067 GTATATGGCATTT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48024627 13 + 63241923 GTACATGGCACTT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4120376 13 - 5279953 GTATGTGGCACTT i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76439975 414 + 151834684 I a score=11706006.000000 s hg38.chr4_KI270787v1_alt 88708 715 + 111943 ACTCTGGCCATAATAGTTGCAGTCCAGCAAGTTCT-TACAGCACTGGTTCAGTAAAGAAGAATATAGAATGCATCTATTAAGTTGATATTCATAGATACT-AAAATGTTCCAGAAATTTCTCATGATACTTTCAAATCAGATTACTGTACA-TTCTACTCTGAATTTGAGGAGCATGTCACAGAATGATTT----------ACATACAG-AAAAACTCATGAACTTTATCTGAT-------------AAGTATTGACAAAAGTATCCA-TTTGAAAAATTCAA-ATC-ATTATAGATTCAAACACATT-CTGGGCTTCCATAATGGCCTA--------------CTGAGAGTAGAGAG-TAGACAGTACTTATGACCACACTAATACTAATAAATATCTCT----AGGCAAGATTCTGTTGCTCCTAGGTTCCCTAATGAAAAA---CA--CAAAGACTTTCCTCCCAGTTAAATAGCTGAATAGGGCTCTCGGCCCAAAGAAGTCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGC-AATCCCTCCCGTACCTGGCACATCAAGATTTATAAGGCAGAGGAGGAATGCATGGCCTAAATAGCTTCAG-AAAGCCATTTGTCATGAGTAAT----------------AAAA-----------------------AAAACACCTTAGAGTAGCTGCTGTTAGATCA---------------CCATTA---CCCTCAAACTAAGGCTGCATGTCTCACGAGATTTATCTGATAAATAT-TTTTAAAT-AAAAAGG---------------------AATTATAGTACACTCCTGAGCCTGCT s panTro5.chr4 119655978 715 - 194502333 ACTCTGGCCATAATAGTTGCAGTCCAGCAAGTTCT-TACAGCACTGGTTCAGTAAAGAAGAACATAGAATGCATCTATTAAGTTGATATTCATAGATACT-AAAATGTTCCAGAAATTTCTCATGATACTTTCAAATCAGATTACTGTACA-TTCTACTCTGAATTTGAGGAGCATGTCACAGAATGATTT----------ACATACAG-AAAAACTCATGAACTTTATCTGAT-------------AAGTATTGACAAAAGTATCCA-TTTGAAAAACTCGA-ATC-ATTATAGATTCAAACACATT-CTGGGCTTCCATAATGGCCTA--------------CTGAGAGTAGAGAG-TAGACAGTACTTATGACCACACTAATACTAATAAATATCTCT----AGGCAAGATTCTGTTGCTCCTAGGTTCCCTAATGAAAAA---CA--CAAAGACTTTCCTCCCAGTTAAATAGCTGAATAGGGCTCTCGGCCCAAAGAAGTCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGC-AATCCCTCCCATACCTGGCACATCAAGATTTATAAGGCAGAGGAGGAATGCATGGCCTAAATAGCTTCAG-AAAGCCATTTGTCATGAGTAAT----------------AAAA-----------------------AAAACACCTTAGAGTAGCTGCTGTTAGATCA---------------CCATTA---CCCTCAAACTAAGGCTGCATGTCTCACGAGATTTATCTGATAAATAT-TTTTAAAT-AAAAAGG---------------------AATTATAGTACACTCCTGAGCCTGCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121069807 715 - 195804263 ACTCTGGCCATAATAGTTGCAGTCCAGCAAGTTCT-TACAGCACTGGTTCAGTGAAGAAGAACATAGAATGCATCTATTAAGTTGATATTCATAGATACT-AAAATGTTCCAGAAATTTCTCATGATACTTTCAAATCAGATTACTGTACA-TTCTACTCTGAATTTGAGGAGCATGTCACAGAATGATTT----------ACATACAG-AAAAACTCATGAACTTTATCTGAT-------------AAGTATTGACAAAAGTATCCA-TTTGAAAAACTCGA-ATC-ATTATAGATTCAAACACATT-CTGGGCTTCCATAATGGCCTA--------------CTGAGAGTAGAGAG-TAGACAGTACTTATGACCACACTAATACTAATAAATATCTCT----AGGCAAGATTCTGTTGCTCCTAGGTTCCCTAATGAAAAA---CA--CAAAGACTTTCCTCCCAGTTAAATAGCTGAATAGGGCTCTCGGCCCAAATAAGTCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGC-AATCCCTCCCATACCTGGCACATCAAGATTTATAAGGCAGAGGAGGAATGCATGGCCTAAATAGCTTCAG-AAAGCCATTTGTCATGAGTAAT----------------TAAA-----------------------AAAACACCTTAGAGTAGCTGCTGTTAGATCA---------------CCATTA---CCCTCAAACTAAGGCTGCATGTCTCACGAGATTTATCTGATAAATAT-TTTTAAAT-AAAAAGG---------------------AATTATAGTACACTCCTGAGCCTGCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4498815 715 - 17550833 ACTCTGGCCATAATAGTTGCAGTCCAGCAAGTTCT-TACAGCACTGGTTCAGTAAAGAAGAATATAGAATGCATCTATTAAGTTGATATTCATAGGTACT-AAAATGTTCTGGAAATTTCTCATGATACTTTCAAATCAGATTACTGTACA-TTCTACTCTGAATTTGAGGAGCATGTCACAGAATGATTT----------ACATACAG-AAAAACTCATGAACTTTATCTGAT-------------AAGTATTGACAAAAGTATCCA-TTTGAAAAATTCGA-ATC-ATTATAGATTCAAACACATT-CTGGGCTTCAATAATGGCCTA--------------CTGAGAGTAGAGAG-TAGGCAGTACTTATGACCACACTAATACTAATAAATATCTCT----AGGCAAGATTCTGTTGCTCCTAGGTTCCCTAATGAAAAA---CA--CAAAGACTTTCCTCCCAGTTAAATAGCTGAATAGGGCTCTCGGCCCAAAGAAGTCTAATCAATGCTTTCACTTCGG-TTTCCCAAGGGATCAACTAAGC-AATCCCTCCCGTACCTGGCACATCAAGATTTATAAGGCAGAGGAGGAATGCATGGCCTAAATAGCTTCAG-AAAGCCATTTGTCATGAGTAAT----------------AAAA-----------------------AAAACACCTTAGAGTAGCTGCTGTTAGATCA---------------CCATTA---CCCTCAAACTAAGGCTGCATGTCTCACGAGATTTATCTGATAAATAT-TTTTAAAT-AAAAAGG---------------------AATTATAGTACACTCCTGAGCCTGCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69368158 717 - 118206036 ACTCTGGCCATAAGAGTTGCAGTCCAGCAAGTTCT-TATAGCACTGGTTCAGTAACGAAGAACATAGAATGCATCTCTCAAGTTGATACTCATAGATACT-AAAATATTCCAGAAATTTCTCATGACATTTTCAAATCAGATTACTGTACA-TTCTACTCTGAATTTGAGGAGCATGTCACAGAATGATTT----------ACGTACAG-AAAAACTCATGAACTTTATCTGAT-------------AAGTATTGACAAAGGTATCCA-TTTGAAAAATTCGA-ATC-ATTATAGATTCAAGCACATTCCTGGGCTTCCATAATGGCCTA--------------TTGAGAGTAGAGAG-TAGACAGTACTTAAGACCACACTAATACTAATAAATATCTCT----AGGCAAGATTCTGCTGCTACTAGGTTCCCTAATGAAAAA---CA--CAAAAACTTTCCTGCCAGTTAAATAGCTGAATAGGGCTCTCAGCCCAAAGGAGTCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGCTAATCCCTCCAGTACCTGGCACATCAAGATTTATAAGGCAGAGGAGGAATGCATGGCCTAAATAGCTTCAG-AAAGCCATTTGTCATGAGTAGT-----------------AAA-----------------------AAAACACCTTAGAGTAGCTGATGTTAGATCA---------------CCATTA---CCCTCAAACTAAGGCTGCATGTCTCACGAGATTTATCTGATAAATAT-TTTTAAATAAAAAAGG---------------------AATTATAGTACACTCCTGAGCCTGCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111581434 717 - 190429646 ACTCTGGCCATAATAGTCGCAGTCCAGCAAGTTCT-TATAGCACTGGTTCAGTAAAGAAGAACATAGGATGCATCTATTAAGTTGATATTCATAGATACT-AAAATATTCCAGAAATTTCTCATGACATTTTCAAATCAGATTACTGTATA-TTCTGCTCTGAATTTGAGGAGCATGTCACAGAATGATTT----------ACATACAG-AAAATCTCATGAGCTTTATCTGGT-------------AAGTATTGACAAAGGTATCCA-CTTGAAACATTCAA-ATCAAATATAGATTCAAGCACATTCCTGGGCTTTCACAATGGCCTA--------------TTGAGAGTAGAGAG-TAGACAGTACTTATGACCACACTAATACTAATAAATATCTCT----AGGCAAGATTCTGCTGCTACTAGGTTCCCTAATGAAAAA---CA--CAAAGACTTTCCTGCCAGTTAAATAGCTGAATAGGGCTCTCAGCCCAAAGGAGTCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGC-AATCACTCCAGTACCTGGCACATCAAGATTTATAAGGCAGAGGAGGAATGCATGGCCTAAATAGCTTCAG-AAAGCCATTTGTTATGAGTAAT----------------AAAA-----------------------AAAACACCTTAGAGTAGGTGCTGTTAGATCA---------------CCATTA---CCCTCAAACTAAGGCTGCATGTCTCACGAAATTTATCTGATAAATTT-TTTGAATA-AAAAGGG---------------------AATTATAGTACACTCCTGAGCCTGCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110750616 716 - 189454096 ACTCTGGCCATAATAGTCGCAGTCCAGCAAGTTCT-TATAGCACTGGTTCAGTAAAGAAGAACATAGGATGCATCTATTAAGTTGATATTCATAGATACT-AAAATATTCCAGAAATTTCTCATGACATTTTCAAATCAGATTACTGTATA-TTCTGCTCTGAATTTGAGGAGCATGTCACAGAATGATTT----------ACATACAG-AAAATCTCATGAGCTTTATCTGGT-------------AAGTATTGACAAAGGTATCCA-CTTGAAACATTCAA-ATCAAATATAGATTCAAGCACATTCCTGGGCTTTCACAATGGCCTA--------------TTGAGAGTAGAGAG-TAGACAGTACTTATGACCACACTAATACTAATAAATATCTCT----AGGCAAGATTCTGCTGCTACTAGGTTCCCTAATGAAAAA---CA--CAAAGACTTTCCTGCCAGTTAAATAGCTGAATAGGGCTCTCAGCCCAAAGGAGTCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGC-AATCACTCCAGTACCTGGCACATCAAGATTTATAAGGCAGAGGAGGAATGCATGGCCTAAATAGCTTCAG-AAAGCCATTTGTCATGAGTAAT-----------------AAA-----------------------AAAACACCTTAGAGTAGGTGCTGTTAGATCA---------------CCATTA---CCCTCAAACTAAGGCTGCATGTCTGACGAAATTTATCTGATAAATTT-TTTGAATA-AAAAGGG---------------------AATTATAGTACACTCCTGAGCCTGCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13317042 716 + 26754465 ATTCTGGCCATAATAGTCGCAGTCCAGCAAGTTCT-TATAGCACTGGTTCAGTAAAGAAGAACATAGGATGCATCTATTAAGTTGATATTCATAGATACT-AAAATATTCCAGAAATTTCTCACGACATTTTCAAATCAGATTACTGTATA-TTCTGCTCTGAATTTGAGGAGCATGTCACAGAATGATTT----------ACATACAG-AAAATCTCATGAGCTTTATCTGGT-------------AAGTATTGACAAAGGTATCCA-CTTGAAACATTCAA-ATCAAATATAGATTCAAGCACATTCCTGGGCTTTCACAATGGCCTA--------------TTGAGAGTAGAGAG-TAGACAGTACTTATGACCACACTAATACTAATAAATATCTCT----AGGCAAGATTCTGCTGCTACTAGGTTCCCTAATGAAAAA---CA--CAAAGACTTTCCTGCCAGTTAAATAGCTGAATAGGGCTCTCAGCCCAAAGGAGTCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGC-AATCACTCCAGTACCTGGCACATCAAGATTTATAAGGCAGAGGAGGAATGCATGGCCTAAATAGCTTCAG-AAAGCCATTTGTCATGAGTAAT-----------------AAA-----------------------AAAACACCTTAGAGTAGGTGCTGTTAGATCA---------------CCATTA---CCCTCAAACTAAGGCTGCATGTCTCACGAAATTTATCTGATAAATTT-TTTGAATA-AAAAGGG---------------------AATTATAGTACACTCCTGAGCCTGCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4218514 716 - 5137665 ACTCTGGCCATAATAGTCGAAGTCCAGCAAGTTCT-TATAGCACTGGTTCAGTAAAGAAGAACATAGGATGCATCTATTAAGTTGATATTCATAGATACT-AAAATATCCCAGAAATTTCTCATGACATTTTCAAATCAGATTACTGTATA-TTCTGCTCTGAATTTGAGGAGCATGTCACAGAATGATTT----------ACATACAG-AAAATCTCATGAGCTTTATCTGGT-------------AAGTATTGACAAAGGTATCCA-CTTGAAACATTCAA-ATCAAATATAGATTCAAGCACATTCCTGGGCTTTCACAATGGCCTA--------------TTGAGAGTAGAGAG-TAGACAGTACTTATGACCACACTAATACTAATAAATATCTCT----AGGCAAGATTCTGCTGCTACTAGGTTCCCTAATGAAAAA---CA--CAAAGACTTTCCTGCCAGTTAAATAGCTGAATAGGGCTCTCAGCCCAAAGGAGTCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGC-AATCACTCCAGTACCTGGCACATCAAGATTTATAAGGCAGAAGAGGAATGCATGGCCTAAATAGCTTCAG-AAAGCCATTTGTCATGAGTAAT-----------------AAA-----------------------AAAACACCTTAGAGTAGGTGCTGTTAGATCA---------------CCATTA---CCCTCAAACTAAGGCTGCATGTCTCACGAAATTTATATGATAAACTT-TTTGAATA-AAAAGGG---------------------AATTATAGTACACTCCTGAGCCTGCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122927936 716 - 135778131 ACTCTGGCCATAATAGTCGCAGTCCAGCAAGTTCT-TATAGCACTGGTTCAGTAAAGAAGAACATAGGATGCATCTATTAAGTTGATATTCATAGATACT-ACAATATTCCAGAAATTTCTCATGACATTTTCAAATCAGATTACTGTATA-TTCTGCTCTGAATTTGAGGAGCATGTCACAGAATGATTT----------ACATACAG-AAAATCTCATGAGCTTTATCTGGT-------------AAGTATCGACAAAGGTATCCA-CTTGAAACATTCAA-ATCAAATATAGATTCAAGCACATTCCTGGGCTTTCACAATGGCCTA--------------CTGAGAGTAGAGAG-CAGACAGTGCTTATGACCACACTAATACTAATAAATATCTCC----AGGCAAGATTCTGCTGCTACTAGGTTCCCTAATGAAAAA---CA--CAAAGACTTTCCTGCCAGTTAAATAGCTGAACAGGGCTCTCAGCCCAAAGGAGTCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGC-AATCACTGCAGTACCTGGCACATCAAGATTTATAAGGCAGGGGAGGAATGCATGGCCTAAATAGCTTCAG-AAAGCCATTTCTCATGAGTAAT-----------------AGA-----------------------AAAACACCTTAGAGTAGGTGCTGTTAGATCA---------------CCATTA---CCCTCAAACTAAGGCTGCATGTCTCACAACATTTATCTGATAAATTT-TTTGAATA-AAAAGGG---------------------AATTATAGTACCCTCCTGAGCCTGCG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2040409 716 + 2427316 ACTCTGGCCATAATAGTCGCAGTCCAGCAAGTTCT-TATAGCACTGGTTCAGTAAAGAAGAACATAGGATGCATCTATTAAGTTGATATTCATAGATACT-AAAATATTCCAGAAATTTCTCATGACATTTTCAAATCAGATTACTGTATA-TTCTGCTCTGAATTTGAGGAGCATGTCACAGAATGATTT----------ACATACAG-AAAATCTCATGAGCTTTATCTGGT-------------AAGTATTGACAAAGGTATCCA-CTTGAAACATTCAA-ATCAAATATAGATTCAAGCACATTCCTGGGCTTTCACAATGGCCTA--------------TTGAGAGTAGAGAG-TAGACAGTACTTATGACCACACTAATACTAATAAATATCTCT----AGGCAAGATTCTGCTGCTACTAGGTTCCCTAATGAAAAA---CA--CAAAGACTTTCCTGCCAGTTAAATAGCTGAATAGGGCTCTCAGCCCAAAGGAGTCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGC-AATCACTCCAGTACCTGGCACATCAAGATTTATAAGGCAGAGGAGGAATGCATGGCCTAAATAGCTTCAG-AAAGCCATTTGTCATGAGTAAT-----------------AAA-----------------------AAAACACCTTAGAGTAGGTGCTGTTAGATCA---------------CCATTA---CCCTCAAACTAAGGCTGCATGTCTCACGAAATTTATCTGATAAATTT-TTTGAATA-AAAAGGG---------------------AATTATAGTACACTCCTGAGCCTGCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1335838 717 + 1448899 ACTCTGGCCATAATAGTCGCAGTCCAGCAAGTTCT-TATAGCACTGGTTCAGTAAAGAAGAACATAGAATGCATCTATCAAGTTGATATTCATAGATACT-AAAATAGTCCAGAAATTTCTCATGACATTTTCAAATCAGATTACTGTATA-TTCTGCTCTGAATTTGAGGAGCATGTCACAGAATGATTT----------ACATACAG-AAAATCTCATGAGCTTTATCTGGT-------------AAGTATTGACAAAGGTATCCA-CTTGAAACATTCAA-ATCAAATATAGATTCAAGCACATTCCTGGGCTTTCACAATGGCCTA--------------TTGAGAGTAGAGAGTTAGACAGTACTTATGACCACACTAATACTAATAAATATCTCT----AGGCAAGATTCTGCTGCTACTAGGTTCCCTAATGAAAAA---CA--CAAAGACTTCCCTGCCAGTTAAATGGCTGAATAGGGCTCTCAGCCCAAAGGAGTCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGC-AATCACTCCAGTACCTGGCACATCAGGATTTATAAGGCAGAGGAGGAATGCATGGCCTAAATAGCTTCAG-AAAGCCATTTGTCATGAGTAAT-----------------AAA-----------------------AAAACACCTTAGAGTAGGTGCTGTTAGATCA---------------CCATTA---CCCTCAAACTAAGGCTGCATGTCTCACGAAATTTATCTGATAAATTT-TTTGAATA-AAAAGGG---------------------AATTATAGTACACTCCTGAGCCTGCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53043083 716 - 190850796 ACTCTGGCCATGATAGCTGCAGTCCAACAAGTTCT-TATCGCACTGGTTCAGTAAAGAAGAGCATCGCATGCATCTACCAAGTTGATATTCACAGATGGT-AAAATGTTCCAGAAATTTCTCATAACTTTTTCAAATCAGATTACTGTACA-TTCTACTCCGAATTTGAGGAGCATGTCACAGAATGATTT----------ACATACAG-AAAATCTCATGAGCTTCATCTGAT-------------AAGCACTGACAAAAGTGTCCA-TTTAAAAAATTCTA-ATCAAATACAGATTCAAGTACATTCCTGTGCTTCCATCATGGCCTA--------------CTGAGAGTAGAGAG-TAGACAGTACTTATGACCACACTAATACTAATAAATGTCTCG----AGGCAAGATTCTGCGGCTACTAGGTTCCCTAATGAAAAA---CA--CAAACATTCTCCTGCCAGTTAAATAGCTGAATAGGGCTCTCAGCCCAAAGGAGTCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGC-AATCCCTCCAGTACCTGGCACATCAAGATTTATAAGGCAGAGGAGGAAGGCATGGCCTAAATAGCTTCAG-AAAGCCGTTTGTCATGAGTAAT-----------------AAA-----------------------AAAACATCTTAGAGTCGCTGCTGTTAGATCG---------------CCATTA---CCCTCAAAGCAAGGCTGCATGTCTCACGAGATTTATCTGATAAATAT-TTTTAAAT-AAAAGGG---------------------AATTATAGTACACCCCTGAGCCTACT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8202560 717 - 15139346 ACTCTGGCAGTGATAGTCGCAGTCCAGCAAGTTCT-TATAGCACTGGTTCAGTAAAGAAGAACATAGCATGCATCTATCAAGTTGATATTCATAGATGGT-AAAATGTTCCAGAAATTTCTCATGACTTTTTCAAATCAGATTACTATACA-TTCTACTCTGAATTTGAGGAGCATGTCGCAGAATGATTT----------ACATAGAGAAAAATCTCATGAGCTTCATCTGAT-------------GAGTATTGACAAAGGTGTCCA-TTTTAAAAATTCTA-ATCAAATACAGAATCAAGTACATTCCTGTGCCTCCATCATGGCCTA--------------ATGAGAGTAGAGAG-TAGACAGTACTTATGACAACACTAATACTAATAAATGTCTCG----AGGCAAGATTCTGCTGCTGCTATGTTCCCTAATGAAAAA---CA--CAAACATTTTCCTGCCAGTTAAATAGCTGAACAGGGCTCTCAGCCCAAAGGATTCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGC-AATCCCTCCAGTACCTGGCACATCAAGATTTATAAGGCAGAGTAGGAAGGCATGGCCTAAGTAGCTTCAG-AAAGCCATCTGTCATGAGTAAT-----------------AAA-----------------------AAAATCT-TAAGAGTCGCTGCTGTTAGATCA---------------CCATTA---CCCTCAAACTAAGGCTGCAAGTCTCACGAGATTTATCTGataaatat-ttttaaataaaaaGGA---------------------AATTATACTACACCCCTGAGCCTGCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6989278 717 - 7304997 ACTCTGGCCATGATAGTTGCAGTCCAGCAAGTTCT-TATAGTACTGGTTCAGTAAAGAAGAACATAGCATACATCTATCTGGTTGATATCCATAGATGGT-AAAATGTTCCAGAAATTTCTCATGACTTTTTCAAATCAGATTACTGTACA-TTCTACTCTGAATTTGAGGAGCATGTCACAGAATGATTT----------ACATAGAG-AAAATCTCATGAGCTTCCTCTGAT-------------AAGTATTGACAAAGGTGTCCA-TTTTAAAAATTCTA-ATCAAATACAGATTCAAGTACATTCCTGTGCCTCCATCATGGCCTA--------------CTGAGAGTAGAGAG-CAGACAGTACTTATGATCACACTAATACTAATAAATGTCTCG----AGGCAAGATTCTGCTGCTACTAGGTTCCCTAATGAAAAA---CA--CAAACATTCTCCTGCCAGTTAAATAGCTGAATAGGGCTCTCAGCCCAAAGGAGCCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGC-AATCCCTCCAGTACCTGGCACATCAAGATTTATAAGACAGAGTAGGAAGGCATGGCCTAAATAGCTTCAG-AAAGCCATTTGTCACGAGTAAT-----------------AAA-----------------------AAAACACCTTAGAGTTGCTGCTGTTAGATCA---------------CCATTA---CCCTCAAACAAAGGCTGCATGTCTCACGAGATTTATCTGATAAATAT-TTTTAAATAAAAAGGG---------------------AATTATAGTACACCCCTGAGCCTGCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9404277 713 - 11631747 ACTCTGGCCATGATAGTTGCAGTCCAGCAAGTTCT-TATAGCACTGGTTCAAT---GAAGAACATAGCATGCATCTATCAAGTTGATATTCATAGATGGT-AAAATGTTCCAGAAATTTCTCATGACTTTTTCAAATCAGATTACTGTACA-TTCTACTCTGAATTTGAGGAGCATGTCACAGAATGATTT----------ACATAGAG-AAAATCTCATGAGCTTCACCTGAT-------------AAGTATTGACAAAGGTGTCCA-TTTAAATAATTCTA-ATCAAATACAGGTTCAAGTACATTCCTGTGCCTCCATCATGGCCTA--------------CTGAGAGTAGAGAG-TAGACAGTACTTATGACCACATTAATACTAATAAATGTCTCG----AGGCAAGATTCTGCTTCTACTAGGTTCCCTAATGAAAAA---CA--CAAACATTTTCCTGCCAGTTAAATAGCTGAATAGGGCTCTCAGCCCAAAGGAGTCTAATCAATGCTTTCACTTCAG-TTTCCCAAGGGATCAACTAAGC-AATCCCTCCAGTACCTGGCACATCAAGATCTATAAGGCAGAGTAGGAAGGCATGACCTAAATAGCTTCAG-AAAGCCATTTGTCATGAGTAAT-----------------AAA-----------------------AAAA-ATCTTAGAGTCGCTGCTGTTAGATCA---------------CCATTA---CCCTCAAACTAAGGCTGCATGTCTCACGAGATTTATCTGATAAATAT-TTTTAAATAAAAAGGG---------------------AATTATAGTACACCCCTGAGCCTGCT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1801977 709 + 3286835 ACTA-GGCTATAATAGTTGCTGTCTATCAAGTTTC-TGTAGCACTGGGTCAGTAAGGAAGTACATAGCACCCATCTATTAAGTTGATATTCATCAAAACTAAAAATGTTCCAGAAATTTCTCATGACATTTTCAAATCAGATTACTGTACA-TTCTACTCTGAACTTGAGGAGGCTATCACAGAATGATTT----------ATACACAGAAAAATCTCATGAGCTTTTTCTGAT-------------AAGTATTGACAAAGATATCCA-TTTAGAAAATTCGA-ATCAAACACAGACGCAAGCACATTCCTTTACTTCTACAATGGCCTA--------------TCGTGAATAGACAG-TAGACAGTACTTATGACTATACTAATAATAATAAATATCTCTAAGCAGGCAAGATTCTGCTGCCACTAGGTTCCCTAATGAAAAA----A--CAAAGACTTTCCTGCTAGCTAAATAGCTGAACAGGGCTCTCAGCCCAAAAGAGTCTAATCAATGCTTTCACTTCAGCCTTCCCAAGGGATCAACTAAGC-AATCGTTCCAGTACCTGGCACATCAAGATTTATACGGCAGAGTAGGAATGCATGGCCTAAATAGCTTCAG-AAAGCCATTTGTTATGAGTAAT-----------------AAA-----------------------AAACCAACTTAGAGTAGCTGCTGTTAGATCA---------------CCATTA---CCCTCACACTAAGGCTGTGTGTCTCATGAG-------------ATAT-TTTTAAATAAAGAGAG---------------------GATTATAGTACACCCCTGAGCTTGCT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1890723 720 + 4188776 ACTA-GGCCTTAATAGTTGCCATCTATCAAGTTTC-CGTAGCACTGGGTCAGTAAAGAAGCACATAGCACCCATCTATTTAGTTGATATTCATCAATACT-AAAATGTTCCAGAAATTTCTCATGACATTTTCAAATCAGATTACTGTACA-TTCTACTCTGAATTTGAGGAGACTATCACAGAATGATTT----------ATACACAG-AAAATCTCATGAGCTTTATCTGAT-------------AAGTATTGACAAAGATATCCA-TTTAGACAATTCTA-ATCAAACACAGACTCAAGCACATTCCTTTACTTCCACAATGGCCTA--------------TTGTGAATAGACAG-GAGACAGTACTTATGACCACACTAATAATAATAAATATCTCTAAGCAGGCAAGATTCTGCTGCCACTAGGTTCCCTAATGAAAAA----A--CAAAGACTTTCCTGCTAGCTAAATAGCTGAACAGGGCTCTCAGCCCAAAAGAGTCTAATCAATGCTTTCACTTCAGCCTTCCCGAGGGATCAACTAAGC-AATTGTTCCAGTACCTGGTACATCAAGATTTATACGGCAGAGTAGGAATGCACAGCCTAAATAGCTTCAG-AAAGCCATCTGTTATGAGTAAT-----------------AAA-----------------------AAACCAACTTAGAGTAGCTGCTGTTAGATCA---------------CCATTA---TCCTCACACTAAGGCTGCGTGTCTCATGAGATTTAGCTGATAAATAT-TTTTAAATAAAAAGGG---------------------AATTATAGTACACCCCTGAGCTTGCT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8638440 701 + 8790067 ACTATGGCCACAAAAGTTGCAGTCCATCAAGTTCCAAGTAGCACTGGTTGGGTCAAGAAGCACATAGCTCCTGTCTAGTAGGTTGACAGTCATCAATGCT-AAAATGTTCCAGAAAGCACTCACGACATTTTCGAATCAGATTATTGTACA-TTCAACTGTGAATTTGAGGAGAATGTCACAGAACAATTT----------ATATACAG-CGAATCTCATAAGCTTTATCTGGT-------------AAGTATTGACAAAGATGTCCA-TTTAGAAAACTCTA-ATCAAATACAGACCCAAGCACATTCCTTCACTTCCATAATGGTCCA--------------CTGTGAATAGACAG-TAG----------------------TAATAACAGACATCTCT----AGGCAAGACTCTGCT-CCACTGGGTTCCCTAATGAAAAA----AACAAAAGACTTTCCTGCCAGCTAAATGGCTGAACCGGGCTCTCAGCCCAAAGGAGTCCAATCAATGCTTCCACTTCAACCTTCCCGAGGGATCAACTAAGC-AATCGCTCCAATACCTGGCACATCAAGATTTATAAGGCCGGGCAGGAATGCATGGCCTAAATGGCTTCAGAAAAACCATTTGTTATGAGTAAT--------------AAAAAA-----------------------AAAACAAAGTAGAGTAGCTGCTGTTAGATCA---------------CCATTC---TTCTCACACAAAGGCTGCGTGTCCCATGAGATTTGGCTGATAAATAT-TTTTGAATAAAATGAG---------------------AATTATAGTACACTCCTGAACTTGTT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76440389 747 + 151834684 accctgacta----agacaCCGTCCATCAGGTTCC---CGGTGCTGACTTGGTGA-GAGGGGCATGGCACAGA-CTACAAGGCTGATGCCCATCAACACT-AAAGCGGTCCAGAACT-------GACATCTTCAAATCAGATTAGGGTACA-TTCTGCTCCACGTCTGAGGAGCCTGACACAGAATGATTC----------ATGCACAG-AAAACCTCACACGCTTTATGCAAT-------------AAGTATTGGCAAATATATCCA-CTTAAAATCTTCTATATCAAATATAGATTCCAACGCACTTCTTCGCTTCCAGAACAGCTCA----GCAGCAGTCCCTGGGAATACCCAG-CAGGGGGGACTTCTGACCCAGGCTCTACTAATAACTATCTCC----AGGTAAAGTTCTGCTGCCCCGAGTCACCCTAATGACAGA----A--CAGAG--TTTCCTGGCAGCTAAATAGCTGAGCAGGGCTCTCAGCCCAAAACAGTCTAATCAATGCTTTCACTTCAACCTTCCCAAGGGATTAACTAAGC-AATCCCTTCA-TAGCTAGCACATAAGGATTTATAAGACAGAATAAGGATTTGTGGCCTAAATAGTGGCAG-AAGACCATTTGTCATTAGTAAT-----------------AAACAACAACAACAAAACAGAAACAGAAACCAGCTTACAGTAGCTCCCGTTAGATCGGgatcccgttagatcccgttagatccTCAAAACTAAGACTG--TCCCCCAGGAGATTTAGAAGGT--GTAT-TTTTAAATAAAAAGAG---------------------GATTACAGTATATCTCCATGCCTGCT i mm10.chr5 I 414 C 0 s canFam3.chr13 48024640 780 + 63241923 ACTATGGCCATAATCATTGCTGTCCATCAAATTCC-CACAGCACTGGTTCAGTAAAGAAGTATACAGCATGCATCTATTAAATTGATATTCATCAATACT-AAAACGTTGAAGAAATTTCCCATGACACTTTCAAATCAGATTACAGTACA-TTCCACTCTGAATTCGAGAAGCATATCACAGAATGATTTATCCTGGCAAATATACAG-AAAATCTCATGAGCTTTATCTGAT-------------AAGCATTGACAAAGGTATCCA-TTTAAAAAATTCTA-AATAAATACAGATTGAAGCACTTTCCTCTGCTTCCAGAATGACTTACCAACCAACAGTACTTGTGAGTAGACAG-TAGACAGTGCTTATGAC--TACTACTACTAATAAATATCTCC----AGGCAAGATTCTGCTGCCACTAGTTTTCCTAATGAAAAAAAAAA--CAAAGACTTT-CTGCCAGCTAAATAGCTGAATAGGGCTCTCAGCCCAAAAGAGCCTAATCAATGCTTTCACTTCAGGCTTCCCAAGGGATCAACTAAGC-AATCGCTCCAGTACCTGGCACATCAAGATTTATAAGGCAGAATAGGAACACATGGCCTAAATAGCTTTGG-AAAGCCATTTGTTTCGAGTAATGATAAATTAAAAAAGAAAAA-----------------------AAAAAAACTTAGGGCCACTAATGTTAAATCA---------------CCATCA---CTCTGAAACTAAGGCTATGTGACTCATGAGATTTACCCAAGAAAGATGttttaaat-aaaaaggaaatttttttttaaaaaagtaaattataataCACACTggagcctgcc i canFam3.chr13 C 0 I 163 s dasNov3.JH568349 4120389 717 - 5279953 GCTATGACCATAA-AGCTGCAGTTCATCGAGTTCC-TATTGCAGTGGTTCAGTAAAGAAATATGCTGCTTGCATCTAATGAATTGATACTCATCAATTCT-AAAACATTCAAGAAATTTCCTGTGACAATTTC-AATCAGATCATAGTATATTTCCACTTTGAATTCAAAGAGTATATCACAGAAT-ATTTATCCTAGCAAATATGTAG--AATTCTCATGAGCTTTATCTGATAAATTTAACTGGAAAGTATTGACAAAGGTATTCATTTTTTAAAAATCTA-AACAAATACAGAATCATGTATATGCCTTTGCTTCCAGATTGGTTTA----CCAATAGTACTTGTGAGTAGCCAG-TAGACAGTGCTTATGACCACACCGA---TAACAAATATCTCT----AGGCAAGATTCTGATGCTGCTGGTATCCCTAATGAAAAA----A--CAAAGACCTCTTTGCCAGCCAAGTAGCTAAATAGGGCTCTCAGCCCAAAAGAACCTAATCAATGCTTTCACTTCAGTCTTCCCAAGGGATCAACTAAGC-AATCGCTACAGTACCTGGCACATCAAGATTTATAAGGCAGAGTAGGAAAGCATGGCCTAAATAACTTTAG-AAAACCATTTGTCTTGAATTAA-----------------AAA-----------------------AAACAAAC--AGAGTAGCTCCTGTTAGATCA---------------TCATCA---TCCTCAAACCAAGGCTGCATGTCT------------------------TTTTAA---AAAAAGG---------------------AATTATAGCACACCCCTGAGCCTACT i dasNov3.JH568349 C 0 C 0 a score=3797547.000000 s hg38.chr4_KI270787v1_alt 89423 246 + 111943 ATAAAAA--------------------------------------------TTGTTAAACACTTGTAATT---ACTCCCCAAAAATAATAAAAATGAAAAACTCTGCTTT-CCACTTGACACAGGCTTGTGCAACAAAAACCACTGTGATTGTCAAACAACAGAGTCACACACAGCTC-CTGCTTC---AT---TAA-GTG-TTCCAGCAGCATCATAGCATGGCCCTGGGAAGAGGTATTTTAACTTTAAATTATAAACCTACCAATGAACCAGTCAACCATTTTCCTAAACAACACAGCAC s panTro5.chr4 119656693 246 - 194502333 ATAAAAA--------------------------------------------TTGTTAAACACTTGTAATT---ACTCCCCAAAAATAATAAAAATGAAAAACTCTGCTTT-CCACTTGACACAGGCTTGTGCAACAAACACCACTGTGATTGTCAAACAACAGAGTCACACACAGCTC-CTGCTTC---AT---TAC-GTG-TTCCAGCAGCATCATAGCATGGCCCTGGGAAGAGGTATTTTAACTTTAAATTATAAACCTACCAATGAACCAGTCAACCATTTTCCTAAACAACACAGCAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121070522 246 - 195804263 ATAAAAA--------------------------------------------TTGTTAAACACTTGTAATT---ACTCCCCAAAAATAATAAAAATGAAAAACTCTGCTTT-CCACTTGACACAGGCTTGTGCAACAAACACCACTGTGATTGTCAAACAACAGAGTCACATACAGCTC-CTGCTTC---AT---TAA-GTG-TTCCAGCAGCATCATAGCATGGCCCTGGGAAGAGGTATTTTAACTTTAAATTATAAACCTACCAATGAACCAGTCAACCATTTTCCTAAACAACACAGCAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4499530 246 - 17550833 ATAAAAA--------------------------------------------TTGTTAAACACTTGTAATT---ACTCCCCAAAAATAATAAAAATGAAAAACTCTGCTTT-CCACTTGTCACAGGCTTGTGCAAAAAAAAGCATTGTGATTGTCAAACAACAGAGTCACACACAGCTC-CTGCTTC---AT---TAA-GTG-TTCCAGCAGCATCATAGCATGGCCCTGGGAAGAGGTATTTTAACTTTAAATTATAAACCTACCAATGAACCAGTCAACCATTTTCCTAAACACCACGGCAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69368875 246 - 118206036 ATAAAAA--------------------------------------------TTGTTAAACACTTGTAATT---ACTTCCCAAAAATAATAAAAATGAAAAACTCTGCTTT-CCACTTGACACAGGCTTGTGCAACAAAAACCATTGGGATTGTCTAACAACAGAGTCACACACAGCTC-CTGCCCC---AT---TAA-GTG-TTCCAGCAGCATCATAGCATGGCCCTGGGAAGAGGTATTTTAACTTCAAATTGTAAACCTACCAATGAATCAGTCAACCATTTTCCTAAACAACACAGCAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111582151 246 - 190429646 ATAAAAA--------------------------------------------TTGTTAAACACTTGTAATT---ACTCCCCAAAAATAATAAAAGTGAAAAACTCTGCTTT-CCACTTGACACAGGTTTGTGCAACAAAAACCATTGTGATTGTCAAACAACAGAGTCACACACAGCTC-CTGCCTC---AT---TAA-GTG-TTCCAGCAGCATCATAGCATGGCCCTGGGAAGAGGTATTTTAACTTCAAATTATAAACCTACCAATGAACCAGTCAACCATTTTCCTAAACAACACAGCAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110751332 246 - 189454096 ATAAAAA--------------------------------------------TTGTTAAACACTTGTAATT---ACTCCCCAAAAATAATAAAAGTGAAAAACTCTGCTTT-CCACTTGACACAGGTTTGTGCAACAAAAACCATTGTGATTGTCAAACAACAGAGTCACACACAGCTC-CTGCCTC---AT---TAA-GTG-TTCCAGCAGCATCATAGCATGGCCCTGGGAAGAGGTATTTTAACTTCAAATTATAAACCTACCAATGAACCAGTCAACCATTTTCCTAAACAACACAGCAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13317758 246 + 26754465 ATAAAAA--------------------------------------------TTGTTAAACACTTGTAATT---ACTCCCCAAAAATAATAAAAGTGAAAAACTCTGCTTT-CCACTTGACACAGGTTTGTGCAACAAAAACCATTGTGATTGTCAAACAACAGAGTCACATACAGCTC-CTGCCTC---AT---TAA-GTG-TTCCAGCAGCATCATAGCATGGCCCTGGGAAGAGGTATTTTAACTTCAAATTATAAACCCACCAATGAACCAGTCAACCATTTTCCTAAACAACACAGCAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4219230 246 - 5137665 ATAAAAA--------------------------------------------TTGTTAAACACTTGTAATT---ACTCCCCAAAAATAATAAAAGTGAAAAACTCTACTTT-CCACTTGACACAGGTTTGTGCAACAAAAACCATTGTGATTGTCAAACAACAGAGTCACACACAGTTC-CTGCCTC---AT---TAA-GTG-TTCCAGCAGCATCATAGCATGGCCCTGGGAAGAGGTATTTTAACTTCAAATTATAAACCCACCAATGAACCAGTCAACCATTTTCCTAAACAACACAGCAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122928652 247 - 135778131 GTAAAAA--------------------------------------------TTGTTAAACACTTGTAATT---ACTCCCCAAAAATAATAAAAGTGAAAAACTCTGCTTTCCCACTTGACACAGGTTTGCGCAACAAAAACCATTGTGATTGTCAAACAACAGAGTCACACACAGCTC-CTGCCTC---AT---TAA-GTG-TTCCAGCAGCATCATAACATGGGCCTGGGAAGAGGTATTTTAACTTCAAATTATAAACCCACCAATGAACCAGTCAACCATTTTCCTAAACAACACAGCAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2041125 246 + 2427316 ATAAAAA--------------------------------------------TTGTTAAACACTTGTAATT---ACTCCCCAAAAATAATAAAAGTGAAAAACTCTGCTTT-CCACTTGACACAGGTTTGTGCAACAAAAACCATTGTGATTGTCAAACAACAGAGTCACACACAGCTC-CTGCCTC---AT---TAA-GTG-TTCCAGCAGCATCATAGCATGGCCCTGGGAAGAGGTATTTTAACTTCAAATTATAAACCCACCAATGAACCAGTCAACCATTTTCCTAAACAACACAGCAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1336555 246 + 1448899 ATAAAAA--------------------------------------------TTGTTAAACACTCGTAATT---ACTCCCCAAAAATAATAAAAGTGAAAAACTCTGCTTT-CCACTCGACACAGGTTTGTGCAACAAAAACCACTGTGATTGTCAAACAAGAGAGTCACACACAGCTC-CTGCCTC---AT---TAA-GTA-TTCCAGCAGCATCGTAGCATGGCCCTGGGAAGAGGTATTTTAACTTCAAATTATAAACCCACCAATGAACCAGTCAACCATTTTCCTAAACAACACAGCAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53043799 239 - 190850796 ATAAAAA--------------------------------------------TTGTTAAACACTTGTAATT---ACTCCACCAAAATAATAAAAATGAAAAACTCCGCTTT-CCACTTGACACAGCCTTGTGCAACAAAAAGCATTGTGATCGTCAAACAACAGAGTCACAGACAG--------CTC---AT---TAA-GTG-TTCCAGCAGCATCATAGTGTGGCCCTGGGAGGAGGTATTTTAATTTCTAACTAGAACCCTACCAATGAAATAGTCAACCATTTCCCTAAACAACACAGTAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8203277 246 - 15139346 ATAAAAA--------------------------------------------TTGTTAAACACTTGTAATT---ACTCCCCTAAAATAATAAAAATGAAAAACTCCGCTTT-CCACTTGACACAGCCTTGTGCAACAAAAAGCATGGTGATTGTCAAACAACAGAGTCACAGACAGCTC-CTGCCTC---AT---TAA-GTG-TTCCAGCAGCATCATAGCATGGCCCTGGGAAGAGATATTTTAATTTCTAATTATAAACATACCAATGAAATAGTCAACCATTTTCCTAAACAACATAGCAC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6989995 246 - 7304997 ATAAAAA--------------------------------------------TCATTAAACACTTGTAATT---ACTCCCCTAAAATAATAAAAATGAAAAACTCTGCTTT-CTGCTTGACACAGCCTTGTGCAACAAAAAGCATTGCGATTGTCAAACAACAGAGTCACAGACAGCTC-CTGCCTC---AT---TAA-GTG-TTCCAGCAGCATCATAGCATGGCCCTGGGAAGAGGTATTTTAATTTCTAATTAGAAACCTACCAATGAAATAGTCAACCATTTTCCTAAACAACACAGCAC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9404990 246 - 11631747 ATAAAAA--------------------------------------------TTGTTAAACACTTGTAATT---ACTCCCCCAAAACAATAAAAATGAAAAACTCCGCTTT-CCACTTGACACAGCCTTGTGCAACAAAAAGCATTGTGATTGTCAAACAACAGAGTCACAGACAGCTC-CTGCCTC---AT---TAA-GTG-TTCCAGCAGCATCATAGCATGGCCATGGGAGGAGGTATTTTAATTTCTAATTATAAACCTACCAATGAAATAGTCAACCATTTTCCTAAACAACACAGCAC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1802686 239 + 3286835 ATGGAAA--------------------------------------------TTGT----------TAATT---ACTCCCCAAAAATAATGA-AATGAAAAACTTTGCTTT-CCACTCGATGCAGGCTCGTGTAACAAAACACACTGTGATTGCCAAACAGCAGAACCACACACAGCTC-CTGCCTC---ATCATTAG-GGGTTTTCAGCAAGACCACAGCATGTCCCTGAGAAGACGTATTTTAACTTCAAATTATAAACCCAGCAATGAAGCAGTGAACTGTTTTCCTAAACAATACAACAT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1891443 246 + 4188776 ATGGAAA--------------------------------------------TTGTTAAACAC--ATAATT---ACTCCCCCAAAATAAGGG-AATGAAAAACTTTGCTTT-CTACTTGATGCAGGCTTGCGTAACAAAACACACTGTGATTGCCAAACAGCAGAATCACACACGGCTC-CTGCCTC---ATCATTAA-GGG-TTTCAGCAGCATCACAGCATGTCCCCGAGAACAAGTATTTTAACTTCAAATTATAAACCTAGCAATGAACCAGTGAACTGTTTTCCTAAACAACACAACAT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8639141 248 + 8790067 ATAGAAA--------------------------------------------CTGTTAAACACGTGTAATT---AGTCCCCCAAAATAATGACAATGAAAATCTTTGCTTT-CTGCTTGATGCAGGCT-GTGTAACAAAATGCATTGTGATTGCCACA-AACAGAATCACACACAGCTCATTGCCTC---ATCAGTAA-AGG-TTTCAGCAGCGTCACAGCACGTCCCTGAGAACAAATATTTTAACTTCAAATTATAAACCTAGCAAAAACCCAGTCAACTGTTTTCCTAAACAACATTACAC i otoGar3.GL873602 C 0 I 183 s mm10.chr5 76441136 263 + 151834684 ATTAAGaaaacaaaaacaacaaaacaaaacaaaataaaacaaaacaaaacCCTGTTAAGTACTTCTAAGC---GCTCTCCGG----AATAAGGCAGATGAGCTCTGCTTT-CTGCCTGATGCACAGTTGC--------------------TGCCACACACCAGCCTGGCTCACAGCTC-TTGCCCA---GT---CACTGGG-TTGCAGGAGCGTCTCAGCGTGGCCA-GGAAGGAGGAATTTTAACCTGATGTCACAGGC--AGCAATGAACCAGCC-ACTGGTTTCCTAAGCAACACAACTT i mm10.chr5 C 0 C 0 s canFam3.chr13 48025583 244 + 63241923 aaaAGAA--------------------------------------------CTATTAAACACTTATAAATCACATTCCTCCAAAATAATGAAAATGAAAAACT--GCTTT-TCACTTGTCCCAGGATTCTGTGACAAAATGCCCTTCAATTGTCA---ACCAGAATCACACACAGCTC-CTGCCTC---AT---CAA-GAA-TTTCTGCAACATCACAGAATATCCCCGTGAATAGGCGCTTTAACTTCAAATTATAAACCTAGCAATGAACCAGCCAACTGTTTTCCTAAGCAACACAGCAT i canFam3.chr13 I 163 C 0 s dasNov3.JH568349 4121106 245 - 5279953 ATAAGCA--------------------------------------------CTGTTAAATACTTGTCATC---ACTTCCTCAAAATAATGAAAATGAAAAACTCTGCTTT-CCACTTGCAGCAGGTTTGTGTAACAAAATGCGTTCTGATGGCCAAACAACAGCATCAGACACAGCTT-CTGTCTCAAAAT---TTA-GAG-TGTCAGCCTCATCCCAGCAT----CTGTGAGCCATCATTTTAACTTCATGCTATAAGCCTAGCAATGAACCAGCCAGCTGTTTACCTAAACCATATAGTAT i dasNov3.JH568349 C 0 C 0 a score=164310.000000 s hg38.chr4_KI270787v1_alt 89669 11 + 111943 TTATAGTCACT s panTro5.chr4 119656939 11 - 194502333 TTATAGTCACT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121070768 11 - 195804263 TTATAGTCACT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4499776 11 - 17550833 TTATAGTCACT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69369121 11 - 118206036 TTATAGTCACT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111582397 11 - 190429646 TTATAGTCACT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110751578 11 - 189454096 TTATAGTCACT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318004 11 + 26754465 TTATAGTCACT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4219476 11 - 5137665 TTATAGTCACT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122928899 11 - 135778131 TTATAGTCACT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2041371 11 + 2427316 TTATAGTCACT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1336801 11 + 1448899 TTATAGTCACT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53044038 11 - 190850796 TTACAGTCAAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8203523 11 - 15139346 TTACAGTCAAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6990241 11 - 7304997 TTACAGTCAAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9405236 11 - 11631747 TTACAGTCAAT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1802925 11 + 3286835 TTATAGTCACT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1891689 11 + 4188776 TTATAGTCACT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8639572 11 + 8790067 ttatattttct i otoGar3.GL873602 I 183 I 119 s mm10.chr5 76441399 11 + 151834684 TTAGACTCACT i mm10.chr5 C 0 C 0 s canFam3.chr13 48025827 8 + 63241923 TTATAGTC--- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4121351 11 - 5279953 TTAGATTTACT i dasNov3.JH568349 C 0 C 0 a score=105230.000000 s hg38.chr4_KI270787v1_alt 89680 10 + 111943 TGACAATTTT- s panTro5.chr4 119656950 10 - 194502333 TGACAATTTT- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121070779 10 - 195804263 TGACAATTTT- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4499787 10 - 17550833 TGACAATTTT- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69369132 10 - 118206036 TGACAATTTT- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111582408 9 - 190429646 TGACAA-TTT- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110751589 9 - 189454096 TGACAA-TTT- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318015 9 + 26754465 TGACAA-TTT- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4219487 9 - 5137665 TGACAA-TTT- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122928910 9 - 135778131 TGACAA-CTT- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2041382 9 + 2427316 TGACAA-TTT- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1336812 9 + 1448899 TGACAA-TTT- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53044049 9 - 190850796 TGACTA-ttt- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8203534 9 - 15139346 TGACAA-ttt- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6990252 9 - 7304997 TGACAA-ttt- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9405247 9 - 11631747 TGACAA-ttt- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1802936 9 + 3286835 TGACAA-ttt- i micMur3.chrUn_NW_017968520v1 C 0 I 385 s proCoq1.NW_012140747v1 1891700 9 + 4188776 TCACAA-TTT- i proCoq1.NW_012140747v1 C 0 I 402 s otoGar3.GL873602 8639702 9 + 8790067 TGACAT-TTT- i otoGar3.GL873602 I 119 I 1 s mm10.chr5 76441410 9 + 151834684 TGAGAT-TTT- i mm10.chr5 C 0 I 49 s canFam3.chr13 48025835 7 + 63241923 --ACAA-CTT- i canFam3.chr13 C 0 I 1 s dasNov3.JH568349 4121362 10 - 5279953 TGACAG-AATT i dasNov3.JH568349 C 0 C 0 a score=46734.000000 s hg38.chr4_KI270787v1_alt 89690 4 + 111943 TTTT------- s panTro5.chr4 119656960 4 - 194502333 TTTT------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121070789 4 - 195804263 TTTT------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4499797 4 - 17550833 TTTT------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69369142 4 - 118206036 TTTT------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111582417 4 - 190429646 TTTT------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110751598 4 - 189454096 TTTT------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318024 4 + 26754465 TTTT------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4219496 4 - 5137665 TTTT------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122928919 4 - 135778131 TTTT------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2041391 4 + 2427316 TTTT------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1336821 4 + 1448899 TTTT------- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53044058 4 - 190850796 tttt------- i calJac3.chr3 C 0 I 297 s saiBol1.JH378162 8203543 4 - 15139346 tttt------- i saiBol1.JH378162 C 0 I 298 s cebCap1.NW_016107439v1 6990261 4 - 7304997 tttt------- i cebCap1.NW_016107439v1 C 0 I 304 s aotNan1.NW_018493494v1 9405256 4 - 11631747 tttt------- i aotNan1.NW_018493494v1 C 0 I 305 s otoGar3.GL873602 8639712 4 + 8790067 TTTT------- i otoGar3.GL873602 I 1 C 0 s mm10.chr5 76441468 4 + 151834684 TGTT------- i mm10.chr5 I 49 C 0 s canFam3.chr13 48025843 2 + 63241923 --TT------- i canFam3.chr13 I 1 I 8 s dasNov3.JH568349 4121372 10 - 5279953 -TTTAAAAATT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1891709 402 + 4188776 I e micMur3.chrUn_NW_017968520v1 1802945 385 + 3286835 I a score=848109.000000 s hg38.chr4_KI270787v1_alt 89694 76 + 111943 AATTTGATGAAC--ATG---TTTGCCATCAACAGC-----GTCGTTATTCTT-TATTATAATTAACAACAACAACTAATAGTAATAA s panTro5.chr4 119656964 76 - 194502333 AATTTGACGAAC--ATG---TTTGCCATCAACAGC-----ATCGTTATTCTT-TATTATAATTAACAACAACAACTAATAGTAATAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121070793 76 - 195804263 AATTTGACGAAC--ATG---TTTGCCATCAACAGC-----GTCGTTATTCTT-TATTATAATTAACAACAACAACTAATAGTAATAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4499801 76 - 17550833 AATTTGACGAAC--ATG---TTTGCCATCAACAGC-----GTCGTTATTCTT-TATTATAATTAACAACAACAACTAATAGTAATAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69369146 76 - 118206036 AATTTGACGAAC--ATG---TTTGCCATCAACAGC-----GTCATTATTCTT-TATTATAATTAACAACAACAACTAATAGTAATAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111582421 76 - 190429646 AATTTGACAAAC--ATG---TTTGCCATCAATAGC-----ATCATTATTCTT-TATTATAATTAACAACAACAACTAATAGTAATAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110751602 76 - 189454096 AATTTGACAAAC--ATG---TTTGCCATCAACAGC-----ATCATTATTCTT-TATTATAATTAACAACAACAACTAATAGTAATAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318028 76 + 26754465 AATTTGACAAAC--ATG---TTTGCCATCAACAGC-----ATCATTATTCTT-TATTATAATTAACAACAACAACTAATAGTAATAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4219500 76 - 5137665 AATTTGACAGAC--ATG---TTTGCCATCAACAGC-----GTCATTATTCTT-TATTATAATTAACAACAACAACTAATAGTAATAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122928923 76 - 135778131 AATTTGACAAAC--ATG---TTTGCCGTCAACAGC-----GTCATTATTCTT-TATTATAATTAACAACAACAACTAATAGTAATAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2041395 76 + 2427316 AATTTGACAAAC--ATG---TTTGCCATCAACAGC-----GTCATTATTCTT-TATTATAATTAACAACAACAACTAATAGTAATAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1336825 73 + 1448899 AATTTGACAAAC--ACG---TTTGCCATCAACAGC-----GTCATTATTCTT-TATTATAATT---AACAACAACTAATAGTAATAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53044359 76 - 190850796 AATTTGACAAAC--ATG---TTTACCATCATCAGC-----ATTGTTACGCTT-TACTATAATTAACAACAACAACTAACAGTAATAA i calJac3.chr3 I 297 C 0 s saiBol1.JH378162 8203845 76 - 15139346 AATTTGACAAAC--ATG---TTTGCCATCATCAGC-----ATCATTATGCTT-TACTATAATTAACAACAACAACTAACagtaataa i saiBol1.JH378162 I 298 C 0 s cebCap1.NW_016107439v1 6990569 76 - 7304997 AATTTGACAAAC--ATG---TTTGCCATCATCAGC-----ATCATTATGCTT-TACTATAATTAACAACAACAACTAACCGTAATAA i cebCap1.NW_016107439v1 I 304 C 0 s aotNan1.NW_018493494v1 9405565 76 - 11631747 AATTTGACAAAC--ATG---TTTGCCATCATCAGC-----ATTGTTATGCTT-TAGTATAATTAACAACAACAACTAACagtaataa i aotNan1.NW_018493494v1 I 305 C 0 s otoGar3.GL873602 8639716 63 + 8790067 AATTTGATGGAC--ATA---GATGCCACCACCAACAAGTAATTATTTGTTTT-TATTGTAATtaataac------------------ i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76441472 81 + 151834684 TATTTAAAGGACATATG---TTTGCCACAAACAGCAA---GTAATTGTTTTTATATAATCATCCACAGCAACAGTCACTGTTGCCAA i mm10.chr5 C 0 C 0 s canFam3.chr13 48025853 72 + 63241923 AATTTGAAGGGT---TG---TAT-CCGTCAATGACAT---ATCATTATTTTT-AACTACAATTAGCAACAGGAGTAAAAACTA---- i canFam3.chr13 I 8 C 0 s dasNov3.JH568349 4121382 83 - 5279953 TATTTGAATGGC--TTGTATTTTGCCACCAACAGCAAGTAAAGATTTGTTTT-TATTATAATAAATAACAATA-CCAATaatattaa i dasNov3.JH568349 C 0 I 1 e proCoq1.NW_012140747v1 1891709 402 + 4188776 I e micMur3.chrUn_NW_017968520v1 1802945 385 + 3286835 I a score=1121463.000000 s hg38.chr4_KI270787v1_alt 89770 76 + 111943 TACTATTTGTTCAG--TTTTGTTCTTCCAG-------GTA------CTAATCAAACAGATTTACATGGATTAT-----------CCTGAAAACATCTTATGG s panTro5.chr4 119657040 76 - 194502333 TACTATTTGTTCAG--TTTTGTTCTGCCAG-------GTA------CTAATCAAACAGATTTACATGGATTAT-----------CCTGAAAATATCTTATGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121070869 76 - 195804263 TACTATTTGTTCAG--TTTTGTTCTGCCAG-------GTA------CTAATCAAACAGATTTACATGGATTAT-----------CCTGAAAACATCTTATGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4499877 76 - 17550833 TACCATTTGTTCAG--TTTTGTTCTGCCAG-------GTA------CTAATCAAACAGATTTACATGGATTAT-----------CCTGAAAACATCTTATGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69369222 76 - 118206036 TACCATTTGTTCAG--TTTTGTTCTGCCAG-------GTA------CTAATCAAACAGATTTACATGGATTAT-----------CCTGAAAACATCTTATGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111582497 76 - 190429646 TACCATTTGTTCAG--TTTTGTTCTGCCAG-------GTA------CTAATCAAACAGATTTACATGGATTAT-----------ACTGAAAACATCTTATGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110751678 76 - 189454096 TACCATTTGTTCAG--TTTTGTTCTGCCAG-------GTA------CTAATCAAACAGATTTACATGGATTAT-----------ACTGAAAACATCTTATGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318104 76 + 26754465 TACCATTTGTTCAG--TTTTGTTCTGCCAG-------GTA------CTAATCAAACAGATTTACATGGATTAT-----------ACTGAAAACATCTTATGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4219576 76 - 5137665 TACCATTTGTTCAG--TTTTGTTCTGCCAG-------ATA------CTAATCAAACAGATTTACATGGATTAT-----------ACTGAAAACATCTTATGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122928999 76 - 135778131 TACAATTTGTTCAG--TTTTGTTCTGCCAG-------GTA------CTAATCAAACAGATTTACATGGATTAT-----------ACTGAAAACATCTTATGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2041471 76 + 2427316 TACCATTTGTTCAG--TTTTGTTCTGCCAG-------GTA------CTAATCAAACAGATTTACATGGATTAT-----------ACTGAAAACATCTTATGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1336898 76 + 1448899 TACCATTTGTTCAG--TTTTGTTCTGCCAG-------GTA------CTAATCAAACAGATTTACATGGATTAT-----------CCTGAAAACATCTTATGG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53044435 76 - 190850796 TACCATTTATTTAG--TTTTGTTCTGCCAG-------GTA------CTAACCTAACAGATTTACCCGGATCAT-----------CCTGAAAACATCTTGCGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8203921 76 - 15139346 taccatttattcag--ttttgttctgccag-------gta------ctaacctaacagatttacacggatcat-----------cCTGAAAACATCTTATGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6990645 76 - 7304997 TACCATTTATTCAG--TTTTGTTCTGCCAG-------GTA------CTAACCTAACAGAATTACACGGATCAT-----------CCTGAAAACATTCTATGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9405641 76 - 11631747 taccatttatttag--ttttgttctgccag-------gta------ctaacctaacagatttacacggatcat-----------cCTGAAAACATCTTATGG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1803330 86 + 3286835 taccatttattcag--ttttgttctgccag-------ata------ctaatttaacacatttacatggattatctaatgtaatccttg-aaatatcttatgg i micMur3.chrUn_NW_017968520v1 I 385 C 0 s proCoq1.NW_012140747v1 1892111 87 + 4188776 taccatttattcag--ttttgttctgccag-------ata------ctaatctaacacatttacatggattacctagtgtaatccttgaaaacaccttatgG i proCoq1.NW_012140747v1 I 402 C 0 s otoGar3.GL873602 8639779 87 + 8790067 tatcatttatacag--ttttgttctgtcag-------gta------ctaatctaacacatttatgtgagttatctcctgtaatccttaaaaacatcttatCA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76441553 77 + 151834684 ---------TTCTG--TTTCCTTCTTTTAGTAGGTCAGTACGTGGTCTAACC-AGCAGATTTCATTTAGTC-------------CTTGAGAACATCTTGTGG i mm10.chr5 C 0 C 0 s canFam3.chr13 48025925 89 + 63241923 taccatgtagtgagtatattgctctgccag-------gca------cggatctgatagttccatgaggattttctcatttaatccttgaaaaattcctCTGG i canFam3.chr13 C 0 I 523 s dasNov3.JH568349 4121466 86 - 5279953 taccatttactgag--tgtt-ttctgccaa-------gca------ccaatctaatagctttacatgtattaactaatttaaatcttgacaacaccttatga i dasNov3.JH568349 I 1 C 0 a score=1842059.000000 s hg38.chr4_KI270787v1_alt 89846 124 + 111943 TCTGTGGCAATCTGTTGTCAAACTAAGGT--TACTGATGTACCAGCACAAAGCATCAAGATCTAACAC----TATGC-------------------------------------------------CATAGACAAATTTTTTGTTAGTATTCATTCTCAATGTAAATATTTTCGGCTTT s panTro5.chr4 119657116 124 - 194502333 TCTGTGGCAATCTGTTATCAAACTAAGGT--TACTGATGTACCAGCACAAAGCATCAAGATCTAACAC----TATGC-------------------------------------------------CATAGACAAATTTTTTGTTAGTATTCATTCTCAATGTAAATATTTTGGGCTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121070945 124 - 195804263 TCTGTGGCAATCTGTTATCAAACTAAGGT--TACTGATGTACCAGCACAAAGCATCAAGATCTAACAC----TATGC-------------------------------------------------CATAGACAAATTTTTTGTTAGTATTCATTCTCAATGTAAATATTTTGGGCTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4499953 124 - 17550833 TCTGTGGCAATCTGTTATCAAACTAAGGT--TACTGATGTACCAGCACAAAGCATCAAGATCTAACAC----TATGC-------------------------------------------------CATAGACAAATTTTTTGTTAGTATTCATTCTCAATGTAAATATTTTGGGCTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69369298 128 - 118206036 TCTGTGGCAATCTGTTACCAAACTAAGGC--TACTGGTCTACCAGCACAAAGCATCAAGGTCTAACACTATTTATGC-------------------------------------------------CATAGACAATTTTTTTGTTAGTATTCATTCTCAATGTAAATATTTCGGGCTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111582573 128 - 190429646 TCTGTGGCAATCTGTTTTCAAACTAAGAT--TACTGATCTACCAGCACAAAGCATCAAGATCTAACACTATTTTTGC-------------------------------------------------CATAGACTAAATTTTTGTTAGTATTCATTCTCAATGTAACTATTTTGGGCTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110751754 128 - 189454096 TCTGTGGCAATCTGTTTTCAAACTAAGAT--TACTGATCTACCAGCACAAAGCATCAAGATCTAACACTATTTTTGC-------------------------------------------------CATAGACTAAATTTTTGTTAGTATTCATTCTCAATGTAACTATTTTGGGCTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318180 128 + 26754465 TCTGTGGCAATCTGTTTTCAAACTAAGAT--TACTGATCTACCAGCACAAAGCATCAAGATCTAACACTATTTTTGC-------------------------------------------------CATAGACTAAATTTTTGTTAGTATTCATTCTCAATGTAACTATTTTGGGCTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4219652 128 - 5137665 TCTGTGGCAATCTGTTTTCAAACTAAGAT--TACTGATCTACCAGCACAAAGCATCAAGATCTAACACTATTTTTGC-------------------------------------------------CATAGACTAAATTTTTGTTAGTATTCATTCTCAATGTAACTATTTTGGGCTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122929075 128 - 135778131 TCTGTGGCAATCTGTTATCAAACTAAGAT--TACTGATCTACCAGCACAAAGCATCAAGATCTAACACTATTTTTGC-------------------------------------------------CATAGACTAAATTTTTGTTAGTATTCATTCTCAATGTAACTATTTTGGGCTTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2041547 128 + 2427316 TCTGTGGCAATCTGTTTTCAAACTAAGAT--TACTGATCTACCAGCACAAAGCATCAAGATCTAACACTATTTTTGC-------------------------------------------------CATAGACTAAATTTTTGTTAGTATTCATTCTCAATGTAACTATTTTGGGCTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1336974 128 + 1448899 TCTGTGGCAATCTGTTATCAGACTAAGAT--TACTGATCTACCAGCACAAAGCATCAAGATCTAACACTATTTTTGC-------------------------------------------------CATAGATTAAGTTTTTGTTAGTATTCATTCTCAATGTAACTATTTTGGGCTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53044511 128 - 190850796 TCTGAGGCAATCTGTTCTTAAAGTAAGGT--GACTGGTCTACCAGCACAGAGCATCAAGAGCTAACATTATTTACGC-------------------------------------------------CATAGACAAAATTTTTGTTACTATTCATTCTCAATGTGAATATTTTGGGCTTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8203997 128 - 15139346 TCTGTGGCAATCTGTTCTTAAACTAAGGT--TACTGGTCTACCAGCACAAAGCATCAAGAGCTAACATTATTTACAC-------------------------------------------------CATAGACAAAATTTTTGTTACTATTCATTCTCAATGTAAATATTTTGGGCTTT i saiBol1.JH378162 C 0 I 282 s cebCap1.NW_016107439v1 6990721 128 - 7304997 TCTGTGGCAATCTGTTCTTAAACTAAGGT--TACTGGTCTACCAGCACAAAGCATCAAGAGCTAACATTGTTTACGC-------------------------------------------------CATAGACAAAATTTTTGTTACTATTCATTCTCAATGTAAATATTTTGGGCTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9405717 128 - 11631747 TCTGTGGCAATCTGTTCTTAAACTAAGGT--TACTGGTCTACCAGCACAAAGCATCAAGAGCTAATATTATTTACGT-------------------------------------------------CATAGACAAAATTTTTCTTACTATTCATTCTCAATGTAAATATTCTGGGCTTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1803416 128 + 3286835 tatgtggcaatttgttatcTAATTAAGGC--TACTGATCTATCAGCACAAAACATCAAAATCTAACATTATTTACTT-------------------------------------------------CGTTGGCAAAATTTTTGTTAGTATCCGTTCTCAATGTAAATCTTTTTGGCTTT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1892198 128 + 4188776 TCTGTGGCAATTTGTTATCTAATTAAGGC--TACTGATCTATAAGCACAAAGCATCAAAATCTAACATTATTTATTC-------------------------------------------------CGTTGGCAAAATTTTTGTTAGTATTCATTCTCAATGTAAATCTCTTTGGCTTT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8639866 177 + 8790067 TCTGTGGCAATTTATTGTCTAATTAAGGC--TACTGATCTATCAGCATAAAACATCAAAATCTAATATTATTTACTCTACGGATAATACTGTTTAGTTATTAATGTTAATAATAATGTATTAATAATGGTAATAATGTTTTTGTTAGTATTCATTCTCAATATAAATCTTTTTGGCTTT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76441630 124 + 151834684 GCGTCAACAGTGTGTTGCCCAATTAAGGCTGTACTG-TTTGTCAGCACACACCATGAAGAGATAACATTATTTATCC-------------------------------------------------TGTAGGCAGAAATTTCG-CAGTATCCATTCTTAATGCA----TTTTTGGCTTT i mm10.chr5 C 0 I 2767 s canFam3.chr13 48026537 126 + 63241923 TCTGTGATGGTTTATTATCTAATCAAGGC--TACTGATCCATGAGCACAACGTGTTAATAGCTAACAT--TTAAATA-------------------------------------------------GAGATACTTAATTTTCCTTAGTATTCATTTTCAATGTAAATATTTTGGGCTTT i canFam3.chr13 I 523 C 0 s dasNov3.JH568349 4121552 116 - 5279953 TCTGTGGTAGT---TTATCTAATTAAGGC--T-CTGATCTATCAACA----GCATCAAAATCTAACATAATTTAAA--------------------------------------------------GATAGAC--AATTTTCATTAGCATTTGTTCACAAGATAG-TGTTTTTGGCTTT i dasNov3.JH568349 C 0 C 0 a score=21000.000000 s hg38.chr4_KI270787v1_alt 89970 1 + 111943 G s panTro5.chr4 119657240 1 - 194502333 G i panTro5.chr4 C 0 C 0 s panPan2.chr4 121071069 1 - 195804263 G i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4500077 1 - 17550833 G i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69369426 1 - 118206036 G i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111582701 1 - 190429646 G i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110751882 1 - 189454096 G i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318308 1 + 26754465 G i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4219780 1 - 5137665 G i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122929203 1 - 135778131 G i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2041675 1 + 2427316 G i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1337102 1 + 1448899 G i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53044639 1 - 190850796 G i calJac3.chr3 C 0 I 290 s saiBol1.JH378162 8204407 1 - 15139346 G i saiBol1.JH378162 I 282 C 0 s cebCap1.NW_016107439v1 6990849 1 - 7304997 G i cebCap1.NW_016107439v1 C 0 I 298 s aotNan1.NW_018493494v1 9405845 1 - 11631747 G i aotNan1.NW_018493494v1 C 0 I 298 s micMur3.chrUn_NW_017968520v1 1803544 1 + 3286835 G i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1892326 1 + 4188776 G i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8640043 1 + 8790067 G i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48026663 1 + 63241923 G i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4121668 1 - 5279953 G i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76441754 2767 + 151834684 I a score=73031.000000 s hg38.chr4_KI270787v1_alt 89971 10 + 111943 GCATTTATCA s panTro5.chr4 119657241 10 - 194502333 GCATTTATCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121071070 10 - 195804263 GCATTTATCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4500078 10 - 17550833 GCATTTATCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69369427 10 - 118206036 GCATTTATCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111582702 10 - 190429646 ACATTTATCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110751883 10 - 189454096 ACATTTATCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318309 10 + 26754465 ACATTTATCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4219781 10 - 5137665 ACATTTATCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122929204 10 - 135778131 ACATTTATCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2041676 10 + 2427316 ACATTTATCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1337103 10 + 1448899 ACATTTATCA i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8204408 10 - 15139346 GCTCTCAGCT i saiBol1.JH378162 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1803545 10 + 3286835 AAATATATCT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1892327 10 + 4188776 AAATTTATCT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8640044 10 + 8790067 AAATTTACCT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48026664 10 + 63241923 AAGTTTATGT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4121669 10 - 5279953 TAATTTGTAT i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76441754 2767 + 151834684 I e aotNan1.NW_018493494v1 9405846 298 - 11631747 I e cebCap1.NW_016107439v1 6990850 298 - 7304997 I e calJac3.chr3 53044640 290 - 190850796 I a score=6465713.000000 s hg38.chr4_KI270787v1_alt 89981 441 + 111943 AGGTTTCCCAAAAAGGTTTTCTTAAAATAGTAGA-TGTTTTTAGGACTATGATCAGATATTTACCTCTTTACTTATTACCAGAAGTTTTACATCTGTTTCACATAAAATTGAAGTAGGTAGATTGGCA-TTAATTGAAAGGCAGTTTTCCTGAAAAATAAAAACAAATGCCTCTCTTCTAGAATTATTTCAGCTCTGACA-TTATTCTT-ATAAT-AAACTCTGGGAAAC--TGGAATTATAAGTATGCATTATTTTAAGCAAAT-AATTTTTAAAAAATAAATCTTGAGCTTACAGAATTAAGAAATATG-AACT-GTTTGGACTTTACTTTCAAATAATTCATCAGCCTTGGCAGAACTATTTTCGGCAAACTATTGCACTAAAACAGAATGTCAGGTTGAATGATTCTTTGCTATGGAATGCCTCA-------TGTGTTAAAACAGAAGCATGAT s panTro5.chr4 119657251 441 - 194502333 AGGTTTCCCAAAAAGGTTTTCTTAAAATAGTAGA-TGTTTTTAGGACTATGATCAGATATTTACCTCTTTACTTATTACCAGAAGTTTTACATCTGTTTCACATAAAATTGAAGTAGGTAGATTGGCA-TTAATTGAAAGGCAGATTTCCTGAAAAATAAAAACAAATGCCTCTCTTCTAGAATTATTTCAGCTCTGACA-TTATTCTT-ATAAT-AAACTCTGGGAAAC--TGGAATTATAAGTATGCATTATTTTAAGCAAAT-ACTTTTTAAAAAATAAATCTTGAGCTTACAGAATTAAGAAATATG-AACT-GTTTGGACTTTACTTTCAAATAATTCATCAGCCTTGGCAGAACTACTTTCGGCAAACTATTGCACTAAAACAGAATGTCAGGTTGAACGATTCTTTGCTATGGAATGCCTCA-------TGTGTTAAAACAGAAGCATGAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121071080 441 - 195804263 AGGTTTCCCAAAAAGGTTTTCTTAAAATAGTAGA-TGTTTTTAGGACTATGATCAGATATTTACCTCTTTACTTATTACCAGAAGTTTTACATCTGTTTCACATAAAATTGAAGTAGGTAGATTGGCA-TTAATTGAAAGGCAGATTTCCTGAAAAATAAAAACAAATGCCTCTCTTCTAGAATTATTTCAGCTCTGACA-TTATTCTT-ATAAT-AAACTCTGGGAAAC--TGGAATTATAAGTATGCATTATTTTAAGCAAAT-ACTTTTTAAAAAATAAATCTTGAGCTTACAGAATTAAGAAATATG-AACT-GTTTGGACTTTACTTTCAAATAATTCATCAGCCTTGGCAGAACTACTTTCGGCAAACTATTGCACTAAAACAGAATGTCAGGTTGAACGATTCTTTGCTATGGAATGCCTCA-------TGTGTTAAAACAGAAGCATGAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4500088 439 - 17550833 AGGTTTCCCAAAAAGGTTTTCTTAAAATAGTAGA-TGTTTTTAGGACTGTGATCAGATATTTACCTCTTTACTTATTACCAGAAGTTTTACATCTGTTTCACATAAAATTGAAGTAGGTAGATTGGCA-TTAATTGAAAGGCAGATTTCCTGAAAAATAAAAACAAATGCCTCTCTTCTAGAATTATTTCAGCTCTGACA-TTATTCTT-ATAAT-AAACTCTGGGAAAC--TGGAATTATAAGTATGCATTATTTTAAGCAAAT-AATTTTTAAAAAATAAATCTTGAGCTTACAGAATT-AGAAATATG-AACT-GTTTGGATTTTACTTTCAAATAATTCATCAGCCTTGGCAGAACTAC-TTCGGCAAACTATTGCACTAAAACAGAATGTCAGGTTGAATGATTCTTTGCTATGGAATGCCTCA-------TGTGTTAAAACAGAAGCATGAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69369437 440 - 118206036 AGGTTTCCCAAAAAGGTTTTCTTAAAATATTAGA-TGTGTTTAGGAATATTATCAGATATTTACCTCTTTACTTACTACCAGAAGTTTTACATCTGTTTCACATAAAATTGAAGTAGGTAGATTGGCA-TTAATTGAAAGGCAGATTTCCTGAAAAATAAAAACAAATGCCTCTCTTCTAGAATTATTTCAGCTCTGACA-TTATTCTT-ATAAT-AAACTCTGGGAAAC--TGGAATTATAAGTATGCGTTATTTTAAGCAAAT-AATTTTTAAAAAATAAATCTTGAGCTTACAGAATTAAGAAATATG-AACT-GTTTGGACTTTACTTTCAAATAATTTATCAGCCTTGGCAGAACTACTTTGGGCAAACTATTGCACTAAAACAGAACATCAGGTTGAATGATTCTTTACTATGGAATGCCTCA-------TGTGTTAAAACAG-AGCATGAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111582712 439 - 190429646 AGGTTTCCCAAAAAGGTTTTCTCAAAATATTAGA-TGTTTTTAGGAATATTATCAGATATTTACCTCTTTACTTATTACCAGATGTTTTACATCTGTTTCTCATAAAATTGAAGTAAGTAGATTGGCA-TTAGTTGAAAGGCAGATTTCCTGAAAAATAAAAACAAATGCCTCTCTTCTAGAATTATTTCATCTCT--CA-TTAGTCTT-ACAAT-AAACTCTGGGAAAC--TGGAATTATAAGTATGCATTATTTTAAGCAAAT-AATTTTTAAAAAATAAATCTTGAGCTTACAGAATTGAGAAATATG-AACT-GTTTGGACTTTACTTTCAAATAATTCATCAGCCTTGGCAGAACTAGTTCGGGCAAACTATTGTACTAAAACAGAACATCAGGTTGAATGATTCTTTACTATGCAATGCCTCA-------TGTGTTAAAACAGAAGCATGAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110751893 439 - 189454096 AGGTTTCCCAAAAAGGTTTTCTCAAAATATTAGA-TGTTTTTAGGAATATTATCAGATATTTACCTCTTTACTTATTACCAGATGTTTTACATCTGTTTCTCATAAAATTGAAGTAAGTAGATTGGCA-TTAGTTGAAAGGCAGATTTCCTGAAAAATAAAAACAAATGCCTCTCTCCTAGAATTATTTCATCTCT--CA-TTAGTCTT-ACAAT-AAACTCTGGGAAAC--TGGAATTATAAGTATGCATTATTTTAAGCAAAT-AATTTTTAAAAAATAAATCTTGAGCTTACAGAATTGAGAAATATG-AACT-GTTTGGACTTTACTTTCAAATAATTCATCAGCCTTGGCAGAACTAGTTCGGGCAAACTATTGTACTAAAACAGAACATCAGGTTGAATGATTCTTTACCATGCAATGCCTCA-------TGTGTTAAAACAGAAGCATGAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318319 440 + 26754465 AGGTTTCCCAAAAAGGTTTTCTCAAAATATTAGA-TGTTTTTAGGAATATTATCAGATATTTACCTCTTTACTTATTACCAGATGTTTTACATCTGTTTCTCATAAAATTGAAGTAAGTAGATTGGCA-TTAGTTGAAAGGCAGATTTCCTGAAAAATAAAAACAAATGCCTCTCTTCTAGAATTATTTCATCTCT--CA-TTAGTCTTCACAAT-AAACTCTGGGAAAC--TGGAATTATAAGTATGCATTATTTTAAGCAAAT-AATTTTTAAAAAATAAATCTTGAGCTTACAGAATTGAGAAATATG-AACT-GTTTGGACTTTACTTTCAAATAATTCATCAGCCTTGGCAGAACTAGTTCGGGCAAACTATTGTACTAAAACAGAACATCAGGTTGAATGATTCTTTACTATGCAATGCCTCA-------TGTGTTAAAACAGAAGCATGAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4219791 439 - 5137665 AGGTTTCCCAAAAAGGTTTTCTCAAAATATTAGA-TGTTTTTAGGAATATTATCAGATATTTACCTCTTTACTTATTACCAGATGTTTTACATCTGTTTCTCATAAAATTGAAGTAAGTAGATGGGCA-TTAGTTGAAAGGCAGATTTCCTGAAAAATAAAAACAAATGCCTCTCTTCTAGAATTATTTCATCTCT--CA-TTATTCTT-ACAAT-AAACTCTGAGAAAC--TGGAATTATAAGTATGCATTATTTTAAGCAAAT-AATTTTTAAAAAATAAATCTTGAGCTTACAGAATTGAGAAATATG-AACT-GTTTGGACTTTACTTTCAAATAATTCATCAGCCTTGGCAGAACTAGTTCGGGCAAACTATTGTACTAAAACAGAACATCAGGTTGAATGATTCTTTACTATGCAATGCCTCA-------TGTGTTAAAACAGAAGCATGAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122929214 439 - 135778131 AGGTTTCCCAAAAAGGTTTTCTCAAAATATTAGA-TGTTTTTAGGAATATTATCAGATATTTACCTCTTTACTTATTACCAGATGTTTTACATCTGTTTCTCATAAAATTGAAGTAAGTAGATTGGCA-TTAGTTGAAAGGCAGATTTCCTGCAAAATAAAAATAAATGCCTCTCTTCTAGAATTATTTCATCTCT--CA-TTATTCTT-ACAAT-AAACTCTGGGAAAC--TGGAATTATAAGTATGCATTATTTTAAGCAAAT-AATTTTTAAAAAATAAATTTTGAGCTTACAGAATTAAGAAATATC-AACT-ATTTGGACTTTACTTTCAAATAATTCATCAGCCTTGGCAGAACTAGTTTGGGCAAACTATTGTGCTAAAACAGAACATCAGGTTGAATGATTCTTTACTATGCAATGCCTCA-------TGTGTTAAAACAGAAGCATGAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2041686 439 + 2427316 AGGTTTCCCAAAAAGGTTTTCTCAAAATATTAGA-TGTTTTTAGGAATATTATCAGATATTTACCTCTTTACTTATTACCAGATGTTTTACATCTGTTTCTCATAAAATTGAAGTAAGTAGATTGGCA-TTAGTTGAAAGGCAGATTTCCTGAAAAATAAAAACAAATGCCTCTCTTCTAGAATTATTTCATCTCT--CA-TTATTCTT-ACAAT-AAACTCTGGGAAAC--TGGAATTATAAGTATGCATTATTTTAAGCAAAT-AATTTTTAAAAAATAAATCTTGAGCTTACAGAATTGAGAAATATG-AAGT-GTTTGGACTTCACTTTCAAATAATTCATCAGCCTTGGCAGAACTAGTTCGGGCAAACTATTGTACTAAAACGGAACATCAGGTTGAATGATTCTTTACTATGCAATGCCTCA-------TGTGTTAAAACAGAAGCATGAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1337113 439 + 1448899 AGGTTTGCCAAAAAGGTTTTCTCAAAATGTTAGA-TGTTTTTAGGAATATTATCAGATATTTACCTCTTTACTTATTGCCAGATGTTTTACATCTGTTTCTCATAAAATTGAAGTAAGTAGATTGGCA-TTAGTTGAAAGGCAGATTTCCTGAAAAATAAAAACAAATGCCTCTCTTCTAGAATTATTTCATCTCT--CA-TTATTCTT-ACAAT-AAACTCTGGGAAAC--TGGAATTATAAGTATGCGTTATTTTAAGCAAAT-AATTTTTAAAAAATAAATCTTGAGCCTACAGAATTAAGAAATACG-AACT-GTTTGGACTTTACTTTCAAATAATTCATCAGCCTTGGCAGAACTAGTTTGGGCAAACTATTGTACTAAAACAAAACATTAGGTTGAATGATTCTTTACTATGCAATGCCTCA-------TGTGTTAAAACAGAAGTATGAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53044930 439 - 190850796 AGGTTTCCCAAGAAGGTTTTCTTAAGATATTAGA-T-TTTTTAGGAATATTATCAGATATTTACTTCTTTACTTATTACCAGAAGTTTTACATCTGTTTCATATAAAATTGAAGTTGGTTGATTGGCA-TTAGTTGAAAGGCAGATTTCCTGAAACATAAAAGTAAATGCATCTCTTCTAGAATCATTTCAGCTCTGACA-TTATTCTT-ACAAT-AAACTCTGGGAAAC--TGGAATTATAAGTATGCATTATTTTAAGCaaat-aatttttaaaaaataaatCTTGAGCTTACAGAATTAAG-AATGTG-AACTGGTTTGGATCTTACTTTCAAGTAATTAATCAGCCTTGGCA-CATTAATTTAGGCAAACTATTGCACTAAAACAGAACTTCAAGTTGAACAATTCTTGGCTATGGAATCCTTCT-------TGTGTTAAAACAGAAGCATGAT i calJac3.chr3 I 290 C 0 s saiBol1.JH378162 8204418 417 - 15139346 AGGTTTACCAAAAAGGTTTTCTTAAAATATTATA-TGTTTTTAGGAATATTATCAGATACTTACTTCTTTACTTATTACCAGAAGTTTTACATCTGTTTCATATAAAATTGAAGTTGGCTGATTGGCA-TTAGTTGAAAGGCAGATTTCCTGAAAAATAAAAGCAAATGCATCTCTTTGAGAATTATTTCAGCTCTGACA-TTATTCTT-ACAAT-AAACTCTGGGAAAC--TGGAATTAGAAGTACACATT-------------------------AATAAATCTTGAGCTTACAGAATTAAG-AATGTG-AACTGGTTTGGATCTTACTTTCAAGTAATTTATCAGCCTTGGCAGCATTAGTTTGGGCAAACTATTGCACTAAAACAGAACTTCAAGTTGAATGATTCTTGGCTATGGAATGCTTCA-------TGTGTTAAAACAGAAGCATGAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6991148 441 - 7304997 AGGTTTCCCAAAAAGGTTTTCTTAAAATATTAGA-TGTTTTTAGGAATACTATCAGATACTTACGTCTTTACTTATTACCAGAAGTTTTACATCTGTTTCATATAAAATTGAAGTTGGCTGATTGGCA-TTAGTTGAAAGGCAGATTTCCTGAAAAATAAAAGTAAATGCACCTCTTCTAGAATTATTTCAGCTCTGACA-TTATTCTT-ACAAT-AAACTCTGGGAAAC--TGGAATTCTAAGTATGCATTATTTTAAGCAAAT-AATTTTTAAAAAATAAATCTTGAGCTTACAGAATTAAG-AATGTG-AACTGGTTTGGATCTTACTTTCAAGTAATTTATCAGCCTTGGCAGCATTAGTTTGGGCAAACTATTGCACTAAAACAGAACTTCAAGTTGAATGATTCTTGGCTATGGAATGCTTCA-------TGTGTTAAAACAGAAGCATGAT i cebCap1.NW_016107439v1 I 298 C 0 s aotNan1.NW_018493494v1 9406144 441 - 11631747 AGGTTTCCCAAAAAGGTTTTCTTAAAATATTAGA-TGCTTTTAGGAATATTATCAGATACTTACTTCTTTACTTGTTACCAGAAGTTTTACATCTGTTTCATATAAAATTGAAGTTGGCTGATTGGCA-TTAGTTGAAAGGCAGATTTCCTGAAAAATAAAAGCAAATGCATCTCTTCTAGAATTATTTCAGCTCTGACA-TTATTCTT-ACAAT-AAACTCTGGGAAAC--TGGAATTATAAGTATGCATTATTTTAAGCAAAT-AATTTTTAAAAAATAAACCTTGGGCTTACAGAATTAAG-AACGTG-AACTGGTTTGGATCTTACTTTCAAGTAATTTATCAGCCTTGGCAGCATAAGTTTGGGCAAACTATTGCACTAAAACAGAACTTCAAGTTGAATGATTCTTGGCTATGGAATGTTTTA-------TGTGTTAAAACAGAAGCATGAT i aotNan1.NW_018493494v1 I 298 C 0 s micMur3.chrUn_NW_017968520v1 1803555 441 + 3286835 AGGCTTCCCAAAAAGGTTTCCTTAAAATATTAGA-TTTTTTAATGAATATCATCAGAtacttacttccttacttattacCAGAAGTTTTACCTCTGTTTCAGATAAAATTGAAGTAAGCCGATTGGT-----ATTAAAAGGCAGATTTCCTGAAAAATAAAAATAAATGCACCTATTCTAGAATTATTTCAGCTCAGACA-TTATTCTT-ATAATAAAACTCTGGGACATTGTAGAATTATAAGTATGCATTATTTTAAGCAAAT-AATTTTTAAAAAATAAATCTTGAGTTTGCAGAATTAATAAAAAAG-GACTGACCTGGACTTTACTTTCACATAATCCATCTGCCCCAGCAGCATTAGTTTGTACAAAATATTGTACAAAAACAGAACCCCAGGTTGAATGATTCCTTCCTCTGGAATACTTCA-------TGTGTTAAAACAGAAGCACGAT i micMur3.chrUn_NW_017968520v1 C 0 I 74 s proCoq1.NW_012140747v1 1892337 439 + 4188776 AGGCTTCCCAAAATGGTTTCCTTAAAATATTAGA-TTTTTGAATGAATATCATCAGA----TACTTCTTTACATATTACCAGAAGTTTCACATCTGTTTCACATAAAACTGAAGTAGGCTGATTGGTG-TTAGTTAAAAGGCAGATTTCCCAAAAAATAAAAACAAATGTACCTATTCTAGAATTATTTCAGCTTTGACA-TTATTCTT-ATAATGAAACTCTGGGACAC--TAGAATTATAAGTATGCATTATTTTAAGAAAAT-AATTTTAAAAAAATAAATCTTGAGTTTACAGAATCAGTAAATAAG-GACTGACCAGGATTTTACTTTCACATAATCCATCAGCCCCAGCAGCATTAGTTTCTACAAAATATTGTACAAAAACAGAACCCCAGGTTGAATGATTCCTTACTCTGGAACACTTCA-------CGTGTTAAGACAGAAGCATGAT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8640054 433 + 8790067 GTGCTTCCCAAAAAGGTTTCCTTAAAATATTAGACTTTTTTTGTGAGTATTGTCAGATACTTACTTCTTTACTTATTACCAGAAGTTTTACATCTGTTTCACATAAAATTGAAGTAGGCTGACTAGTA-TTAGTTAAAAGGCAGATTTCCTGAAAAATAAAAACAAATGCACCTATTCTGGAATTATTTCAGCTCTGACATTTATTCTT-ACAATGAAACTCTGAGAAGCTGTAGAATTACAAGTCTGTATTATTTTAAGCAAAT-AATTTTTTTAA---AAGTCTTGAGCTTATAGAATTAATCAATAAT-GACTGGTCTGGACTT----------TAATCCATCAGCCCAAGCAGCATTAGTTTGTATAAAGTATTATACAAAAACAGAATCCCAGGTTGAAAGATTCTTTATTCTGGAATACTTTG-------TATGTTAAAACAG-AGCATGAT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48026674 438 + 63241923 AGGCTTTCCAAAAGGACTTTCTTAAAACAGTAAT-CATTTTTATGAATATCATCAAA----TACTTCTTCACTCATTATCAGAAATTTTACATCTATTTTACATAAAATTGAAGTAGGCTGATTGGTATTTACTTATAAGGCAGATTTCCTGGAAAATAAAAACAAATCCATCTCTT--AGAATTATTTTAGCTCTGACA-TTATTCTT-ACAATGAAATTCTAGGAACCTGTGGAATTATAAGTATGCACCATTTTAAGCACAT-GATTTT-AAAAAATAAATCTTAAACTTACAGAATTAATAAATAAG-GATTGGCCTGGACTTTCCTTTTGGATAATCTATCAGCTCCAGCAGAATTAATTTGTACCAACTATAGTA-TAAGAAAGAATTCCAGGCCAAATGAGTCTTTAGTCTGGAATATTTTA-------CATGCTAAAACTGCAGCATGAT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4121679 434 - 5279953 AGGCTTCCAACAAATGTTTCCTTAAAATATCAT--TTTTTTAATGAATAACATCAGA----TACTTCTTTACTTAATAACAGAAGTTTTACATCTGCTTTACATAAAATCAAAGTAGACCGATGGGCA-TTAGTTAACAGGCAGATTTTCTGAAAAATAAAAATAAACACATCTATTCTAGAATTATTTCAACTCTGGCA-TTACTCTT-GTAGTGGAAATCTGGGAACCTGTAAAAGCATAAATA----TCACTTTAAGCAAGTAAAATTTTAAAAAATAAATCCAGAGAGTACATGTTTAATAAATAAGAAACTGATGTGGACATTACTTTCATGTAACTTCTCAGTCCT-GCAGTATTAACT---------TATTGTATAAAAACAG-ACCCCAGATTGAATGATTCTTTACTGTGGGGCACATGGGACACACTGGTTTAAAACAGCAGCATGAT i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76441754 2767 + 151834684 I a score=1098228.000000 s hg38.chr4_KI270787v1_alt 90422 91 + 111943 CTGTAAGAATACATAATGCTGTGTCCTACCTACATTCAGCA--CTGTTAC--TGAGGAAA------------------GGGGGTGC----TTTGTTC-TGAAGATGACAAGCCTGAAG s panTro5.chr4 119657692 91 - 194502333 CTGTAAGAATACATAATGCTGTGTCCTACCTACATTCAGCA--CTGTTAC--TGAGGAAA------------------GGGGGTGC----TTTGTTC-TGAAGATGACAAGCCTGAAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121071521 91 - 195804263 CTGTAAGAATACATAATGCTGTGTCCTACCTACATTCAGCA--CTGTTAC--TGAGGAAA------------------GGGGGTGC----TTTGTTC-TGAAGATGACAAGCCTGAAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4500527 91 - 17550833 CTGTAAGAATACATAATGCTGTGTCCTACCTACATTCAGCA--CTGTTAC--TGAGGAAA------------------GGGGGTGC----TTTGTTC-TGAAGATGACAAGCCTGAAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69369877 93 - 118206036 CTGTAAGAATACATAATGCTGTGTCCTACCTACATTCAGCACTCTGTTAC--TGAGGAAA------------------GGGGGTGC----TTTGTTC-TGAAGATGACAAGCCTGAAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111583151 92 - 190429646 CTGTAAGAATACATAATGCTGTGTCCTACCTACATTCAGCACTCTGTTAC--TGAGGAAA------------------GGGGGTGC----TTTGTTC-TGAAGATGACAGGCCTG-AG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110752332 92 - 189454096 CTGTAAGAATACATAATGCTGTGTCCTACCTACATTCAGCACTCTGTTAC--TGAGGAAA------------------GGGGGTGC----TTTGTTC-TGAAGATGACAGGCCTG-AG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318759 92 + 26754465 CTGTAAGAATACATAATGCTGTGTCCTACCTACATTCAGCACTCTGTTAC--TGAGGAAA------------------GGGGGTGC----TTTGTTC-TGAAGATGACAGGCCTG-AG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4220230 92 - 5137665 CTGTAAGAATACATAATGCTATGTCCTACCTACATTCAGCACTCTGTTAC--TGAAGAAA------------------CGGGGTGC----TTTGTTC-TGAAGATGACAGGCCTG-AG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122929653 91 - 135778131 CTGTAAGAACACATAATGCTGTATCCTACCTACCGTCAGCACTCTGTTAC--TGAGGAAA------------------GGGTGTGA-----TTGTTC-TGAAGATGACAGGCCTG-AG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2042125 92 + 2427316 CTGTAAGAATACATAATGCTATGTCCTACCTACATTCAGCACTCTGTTAC--TGAAGAAA------------------GGGGGTGC----TTTGTTC-TGAAGATGGCAGGCCTG-AG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1337552 92 + 1448899 CTGTAAGAATACATAATGCTGTGTCCTACCTACATTCAGCACTCTGTTAC--TGAGGAAA------------------GGGGGTGC----TTTGTTC-TGAAGAAGACAAGCCTG-AG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53045369 97 - 190850796 CTGCAGGAATACATAATACTGTGTCCTACCTACATTCAGCACTCTGTTAT--TGAGGAAA------------------GGGGGTGCTTTCTCTGTAC-TGAAGAAGACAAGCATGAAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8204835 97 - 15139346 CTGCAAGAATACATAATACTGTGTCCTACCTACATTCAGCATTCTTTTGT--TGAGGAAA------------------GGGGGTGCTTTATTTGTAC-TGAAGATGACAAGCCTGAAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6991589 97 - 7304997 CTGCAGGAATACATAATACTGTGTCCTACCTACATTCAGCACTCTGTTAT--TGAGGAAA------------------GGGGGTGCTTTCTTTGTAC-TGAAGGTGACAAGCCTGAAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9406585 97 - 11631747 CTGCAAGAATACATAATACTGTGTCCTACCTACATTCAGCACTCTGTTAT--TGAGGAAA------------------GGGGGTGCTTTCTTTGTAC-TGAAGATGACAAGCCTGAAG i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1892776 79 + 4188776 CTGCAAACATGCACAATCCTATGTCCTACCTACATTCAACACTTTATTAC--TGAGAAAA------------------AGGGGTGC----TTAGTTCGTGAAG--------------- i proCoq1.NW_012140747v1 C 0 I 1 s otoGar3.GL873602 8640487 79 + 8790067 CTGCAAAAATACACAATTCTATGCTCTGCCTGGATTCAACACTTCATTGC--TGAGAAAA------------------GGGGGTGC----TTGGTTTTTGAAA--------------- i otoGar3.GL873602 C 0 I 3 s canFam3.chr13 48027112 113 + 63241923 CCATAAACATACATAATGCTGTGTCCTATCTCCATCCAACAACTTACTACTATGAGAAAAAGATGCTTTAAAAAGGGGGGAGGTAC----TTTGTTC-TCAGGACAGCAGACTTGGAA i canFam3.chr13 C 0 I 1 s dasNov3.JH568349 4122113 93 - 5279953 GTGCACACACCCGTAATGCTGTGGCCCAGCTCCACTCAACGCCTTATTCC--TAAGAAAA------------------AGGGGGGC----TTAGTTC-TGAAGACCGCAAGCTTGGAG i dasNov3.JH568349 C 0 I 1 e micMur3.chrUn_NW_017968520v1 1803996 74 + 3286835 I e mm10.chr5 76441754 2767 + 151834684 I a score=1213529.000000 s hg38.chr4_KI270787v1_alt 90513 80 + 111943 GGAGAAGCTGA-CAGAGATCCATGATGCTCAGTGAGG-----GGGGATAGTGTTAGTGTGACCGTACAC-AAAATTATAACACTTTT s panTro5.chr4 119657783 80 - 194502333 GGAGAAGCTGA-CAGAGATCCATGATGCTCAGTGAGG-----GGGGATAGTGTTAGTGTGACCGTACAC-AAAATTATAACACTTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121071612 80 - 195804263 GGAGAAGCTGA-CAGAGATCCATGATGCTCAGTGAGG-----GGGGATAGTGTTAGTGTGACCGTACAC-AAAATTATAACACTTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4500618 80 - 17550833 GGAGAAGCTGA-CAGAGATCCATGATGCTCAGTGAGG-----GGGGATAGTGTTAGTGTGACCGTACAC-AAAATTATAACACTTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69369970 80 - 118206036 GGAGAAGCTGA-CAGAGATCCATGATGCTCAGTGAGG-----GGGGATAGTGTTAGTGTGACCGTACAC-AAAATTATAACACTTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111583243 79 - 190429646 GGAGAAGCTGA-CAGAGATCCATGATGCTCAGTGAGG-----GGGG-TAGTGTTAGTGTGACCGTACAC-AAAATTATAACACTTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110752424 79 - 189454096 GGAGAAGCTGA-CAGAGATCCATGATGCTCAGTGAGG-----GGGG-TAGTGTTAGTGTGACCGTACAC-AAAATTATAACACTTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318851 80 + 26754465 GGAGAAGCTGA-CAGAGATCCATGATGCTCAGTGAGG-----GGGGATAGTGTTAGTGTGACCGTACAC-AAAATTATAACACTTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4220322 80 - 5137665 GGAGAAGCTGA-CAGAGATCCATGATGCTCAGTGAGG-----GGGGATAGTGTTAGTGTGACCGTACAC-AAAATTATAACACTTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122929744 80 - 135778131 GGAGAAGCTAA-CAGAGATCCATGATGCTCAGTGAGG-----GGGGATAGTGTTAGTGTGACCGTACAC-AAAATTATAACACTTTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2042217 80 + 2427316 GGAGAAGCTGA-CAGAGATCCATGATGCTCAGTGAGG-----GGGGATAGTGTTAGTGTGACCGTACAC-AAAATTATAACACTTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1337644 80 + 1448899 GGAGAAGCTGA-CAGAGATCCATGATGCTCAATGAGG-----GGGGATAGTGTTAGTGTGACCATACAC-AAAATTATAACACTTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53045466 80 - 190850796 GGAGAAGCTGA-CAGAGATCCATGATGCTCAGTGAGG-----GGGGATAGTGTCAGTGTGACCATACAC-AAAATCATAACACTTTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8204932 80 - 15139346 GGAGAAGCTGA-CAGAGATCCGTGATGCTCAGTGAGG-----AGGGATAGTGTTAGTGTGACCATACAC-AAAATCATAACAGTTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6991686 81 - 7304997 AGAGAAGCTGA-CAGAGATCCATGATGCTCAATGAGG-----GGGGATAGTGTTCGTGTGACCATACACAAAAATCATAACACTTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9406682 80 - 11631747 GGAGAAGCTGA-CAGAGATCCATGATGCTCAGTGAGG-----AGGGATAGTGTTAGTGTGACCATACAC-AAAATCGTAACAGTTTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1804070 80 + 3286835 GGAGAAGCTGA-GATAGAGCCATGATGCTTGATGAAG-----GGGGATGGTGTTAGTGTGACCATATAT-AAAATTATAACATGTTT i micMur3.chrUn_NW_017968520v1 I 74 C 0 s proCoq1.NW_012140747v1 1892856 78 + 4188776 GGAGAAGCT---GACAGAGCCATGATGCTCGATGAAG-----GGGGATGGTGTTAGTGTGACCATATAT-AAAATTATAACACGTTT i proCoq1.NW_012140747v1 I 1 C 0 s otoGar3.GL873602 8640569 75 + 8790067 -----AGCTGG-CGTAGAGCCATGATGCTCAGTAAGA-----GGAGATGGTGTTAGCGTGACCATATAT-AAAATTATAATACTTCT i otoGar3.GL873602 I 3 C 0 s canFam3.chr13 48027226 78 + 63241923 GGAGATACTGA-CCTAGATCCATGATGCTCAGTGAGG-----GAGGATGGTGTTCATGTGACTGTATAC-AGAATTACACTA--TTT i canFam3.chr13 I 1 C 0 s dasNov3.JH568349 4122207 86 - 5279953 GGGGATGCTGACCCTACAGCCACGATATGCTGGTGGGAATGTGGGGCACGGGGGAGTGCAGCCATGTGC-CAAGTTATAACGTTGTT i dasNov3.JH568349 I 1 I 269 e mm10.chr5 76441754 2767 + 151834684 I a score=108962.000000 s hg38.chr4_KI270787v1_alt 90593 7 + 111943 TGTGATT s panTro5.chr4 119657863 7 - 194502333 TGTGATT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121071692 7 - 195804263 TGTGATT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4500698 7 - 17550833 TGTGATT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370050 7 - 118206036 TGTGATT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111583322 7 - 190429646 TATGATT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110752503 7 - 189454096 TATGATT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318931 7 + 26754465 TATGATT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4220402 7 - 5137665 TATGATT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122929824 7 - 135778131 TATGATT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2042297 7 + 2427316 TATGATT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1337724 7 + 1448899 TATGATT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53045546 7 - 190850796 TATGATT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8205012 7 - 15139346 TATGATT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6991767 7 - 7304997 TATGATT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9406762 7 - 11631747 TATGATT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1804150 7 + 3286835 TGTGATT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1892934 7 + 4188776 TGTGATT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8640644 7 + 8790067 TGTGATT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48027304 7 + 63241923 TATGACT i canFam3.chr13 C 0 C 0 e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122293 269 - 5279953 I a score=71357.000000 s hg38.chr4_KI270787v1_alt 90600 7 + 111943 ACAAAAT s panTro5.chr4 119657870 7 - 194502333 ACAAAAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121071699 7 - 195804263 ACAAAAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4500705 7 - 17550833 ACAAAAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370057 7 - 118206036 ACAAAAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111583329 7 - 190429646 ATAAGAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110752510 7 - 189454096 ATAAGAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318938 7 + 26754465 ATAAGAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4220409 7 - 5137665 ATAAGAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122929831 7 - 135778131 ATAAAAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2042304 7 + 2427316 ATAAGAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1337731 7 + 1448899 ATAAAAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53045553 5 - 190850796 ATAAA-- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8205019 7 - 15139346 ATAAAAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6991774 7 - 7304997 ATAAAAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9406769 7 - 11631747 ATAAAAT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1892941 7 + 4188776 ATAAAAT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8640651 7 + 8790067 GTAAAAt i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48027311 7 + 63241923 TTAATAT i canFam3.chr13 C 0 I 221 e micMur3.chrUn_NW_017968520v1 1804157 0 + 3286835 C e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122293 269 - 5279953 I a score=8952.000000 s hg38.chr4_KI270787v1_alt 90607 1 + 111943 T s panTro5.chr4 119657877 1 - 194502333 T i panTro5.chr4 C 0 C 0 s panPan2.chr4 121071706 1 - 195804263 T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4500712 1 - 17550833 T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370064 1 - 118206036 A i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111583336 1 - 190429646 T i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110752517 1 - 189454096 T i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318945 1 + 26754465 T i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4220416 1 - 5137665 T i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122929838 1 - 135778131 T i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2042311 1 + 2427316 T i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1337738 1 + 1448899 T i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8205026 1 - 15139346 T i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6991781 1 - 7304997 T i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9406776 1 - 11631747 T i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1892948 1 + 4188776 T i proCoq1.NW_012140747v1 C 0 I 41 s otoGar3.GL873602 8640658 1 + 8790067 t i otoGar3.GL873602 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1804157 0 + 3286835 C e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122293 269 - 5279953 I e calJac3.chr3 53045558 0 - 190850796 C e canFam3.chr13 48027318 221 + 63241923 I a score=15096.000000 s hg38.chr4_KI270787v1_alt 90608 2 + 111943 Gt- s panTro5.chr4 119657878 2 - 194502333 Gt- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121071707 2 - 195804263 Gt- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4500713 2 - 17550833 Gt- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370065 2 - 118206036 Gt- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111583337 2 - 190429646 Gt- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110752518 2 - 189454096 Gt- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318946 2 + 26754465 Gt- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4220417 2 - 5137665 Gt- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122929839 2 - 135778131 Gt- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2042312 2 + 2427316 Gt- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1337739 2 + 1448899 Gt- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53045558 1 - 190850796 -t- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8205027 2 - 15139346 Gt- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6991782 2 - 7304997 GT- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9406777 2 - 11631747 Gt- i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8640659 2 + 8790067 -tt i otoGar3.GL873602 C 0 I 189 e proCoq1.NW_012140747v1 1892949 41 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804157 0 + 3286835 C e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122293 269 - 5279953 I e canFam3.chr13 48027318 221 + 63241923 I a score=2955418.000000 s hg38.chr4_KI270787v1_alt 90610 307 + 111943 tgggaggctgaggcaggaggattactttaggtcaggagttcgagaccagcccaggtggcacaccgaaaccccatctctat--------------aaaacaatttttttaaatagagggtgcggtggctcacgcctgtaatcccagcactttgggaggtccaggcaggctgatcacctgaggtcaggagttcaagaccagcctggccaacatgataaaaccccgtctctactaaaaatacaaaaattagtggtatggtggcacgtgcctgtaatccccgctactcgggaggctgaggctggaaaattgcttgaacccgggag s panTro5.chr4 119657880 307 - 194502333 tgggaggctgaggcaggaggattactttaggtcaggagttcgagaccagcccaggtggcacaccgaaaccccatctctag--------------aaaacaattttttaaaatagagggtgcggtggctcacgcctgtaatcccagcactttgggaggtccaggcaggctgatcacctgaggtcaggagttcaagaccagcttggccaacatgataaaaccccgtctctactaaaaatacaaaaattagtggtatggtggcacgtgcctgtaatccccgctactcgggaggctgaggctggaaaattgcttgaacccaggag i panTro5.chr4 C 0 C 0 s panPan2.chr4 121071709 307 - 195804263 tgggaggctgaggcaggaggattactttaggtcaggagttcgagaccagcccaggtggcacaccgaaaccccatctctat--------------aaaacaattttttaaaatagagggtgcggtggctcacgcctgtaatcccagcactttgggaggtccaggcaggctgatcacctgaggtcaggagttcaagaccagcttggccaacatgataaaaccccgtctctactaaaaatacaaaaattagtggtatggtggcacgtgcctgtaatccccgctactcgggaggctgaggctggaaaattgcttgaacccgggag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4500715 306 - 17550833 tgggaggctgaggcaggaggattactttaggtcaggagttcgagacccg-ccaggtggcacaccgaaaccccatctctat--------------aaaacaatttttttaaatagagggtgcggtggctcacgcctgtaatcccagcactttgggaggtcgaggcaggctgatcacctgaggtcaggagttcaagaccagcttggccaacatgataaaaccccgtctctactaaaaatacaaaaattagtggtatggtggcatgtgcctgtaatccccactactcgggaggctgaggctggaaaattgcttgaacccgggag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370067 307 - 118206036 tgggaggctgaggcaggaggattactttaggtcaggagttcgagaccagcacaggtggcacactgaaaccgcgtctctgt--------------aaaacaatttttttaaatagcgggcgcggtggctgatgcatgtaatcccagcactttgggaggtcgaggcgggctgatcacctgaggtcaggagttcaagaccagcttggccaacatggtaaaaccctgtctctactaaaaatacaaaaattagcgatatggtggcacgtgcctgtaatcccagctactcaggaggctgaggctggagaattgcttgaatccaggag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111583339 307 - 190429646 tgggaggctgaggcaggaggattactttaggccaggagttcgagaccagcccaggtggcacactgaaaccccgtctctat--------------aaaacaattttttgaaatagcgagcttggtggctcgctcctgtaatcccagcactttggaaggtagaggtgggctgatcacctgaggtcaggagttcaagaccagcttggccaacatggtaaaaccttgtctctactaaaaatacaaaaagtagtggtatggtggcacgtgcctataatcccagctacttgggaggctgaggctggagaattctttgaacccctgag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110752520 307 - 189454096 tgggaggctgaggcaggaggattactttaggccaggagttcgagaccagcccaggtggcacactgaaaccccgtctctat--------------aaaacaattttttgaaatagcgagcttggtggctcgctcctgtaatcccagcactttggaaggtagaggtgggctgatcacctgaggtcaggagttcaagaccagcttggccaacatggtaaaaccttgtctctactaaaaatacaaaaagtagtggtatggtggcacgtgcctgtaatcccagctacttgggaggctgaggctggagaattctttgaacccctgag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13318948 307 + 26754465 tgggaggctgaggcaggaggattactttaggccaggagttcgagaccagcccaggtggcacactgaaaccccgtctctat--------------aaaacaagtttttgaaatagcgagcttggtggctcgctcctgtaatcccagcactttggaaggtagaggtgggctgatcacctgaggtcaggagttcaagaccagcttggccaacatggtaaaaccttgtctctactaaaaatacaaaaagtagtggtatggtggcacgtgcctgtaatcccagctacttgggaggctgaggctggagaattctttgaacccctgag i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4220419 307 - 5137665 tgggaggctgaggcaggaggattactttaggccaggagttcgagaccagcccaggtggcacactgaaaccccgtctctat--------------aaaacaattttttgaaatagcgagcttggtggctcgctcctgtaatcccagcactttgggaggtagaggtgggctgatcacctgaggtcaggagttcaagaccagcttggccaacatggtaaaaccctgtctctactaaaaatacaaaaagtagtggtatggtggcacgtgcctgtaatcccagctacttgggaggctgaggctggagaattctttgaacccctgag i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122929841 307 - 135778131 tgggaggctgaggcaggaggattactttaggccaggagttcgagaccagcccaggtggcacaatgaaactccgtctctat--------------aaaacaattttttgaaatagcgagtgtggtggcttgctcctgtaatcccagcactttgggaggtagaggtgggctgatcacctgaggtcaggagttcaagaccagcttggccaacatggtaaaaccctgtctctactaaaaatacaaaaagtagtggtatggtggcacgtacctgtaatcccaggtacttgggaggctgaggctggagaattgtttgaacccctgag i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2042314 307 + 2427316 tgggaggctgaggcaggaggattactttaggccaggagttcgacaccagcccaggtggcacactgaaaccccgtctctat--------------aaaacaattttttgaaatagcgagcttggtggctcgctcctgtaatcccagcactttgggaggtagaggtgggctgatcacctgaggtcaggagttcaagaccagcttggtcaacatggtaaaaccctgtctctactaaaaatacaaaaagtagtggtatggtggcacatgcctgtaatcccagctacttgggaggctgaggctggagaattctttgaacccctgag i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1337741 307 + 1448899 tgggaggctgaggcaggaggactactttaggccaggagtttgagaccagcccaggtggcacattgaaaccccgtctctaa--------------aaaacaatttgttaaaatagcgagcgtggtggctcgctcctgtaatcccagcactttgggaggtagaggtgggctgatcacctgaggtcaagagttcaagaccagcttggccaacatggtaaaaccctgtgtctactaaaaatacaaaaagtagtggcatggtggcgcgtgcctgtaatcccagctacttgggaggctgaggctggagaattgtttgaacccctgag i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53045559 308 - 190850796 tgggaggctgaggcaggaggattacttgaggccgggagttcgagaccagcccgggtagcacaccaaaaccccttctctat-------------aaaaaaAATTTTTTTTAATATTgggtgcagtagctcatgcctgtaatcccagcactttaggagttggagctgggctgatcacctgaggtcaggagttcaagatcagcttggccaacatggtaaaaccccatctctactaaacatacaaaaattaatagtatggtggcatgtgcccgtaatcccagctactcaggaggctgaggctgaagaattgcttaaacccaggag i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8205029 321 - 15139346 tgggaggctgagtcaggaggattacttgaggccaggagtttgagaccagcctgggtagcacaccaaaactccatctctattaaaaaaaaaaaaaAAAAAAACATTTTAAAATATTgggtgcggtagctcatgcctgtaatcccagcactttgggaggtcaaggtggcctgatcacctgaggtcaggagttcaagaccagcttggccaacatagtaaaaccccgtctctactaaaagtacaaaaattaatagtatggtggcatgtgcctgtaatcccagctactcaggaggctaaggctggagaatagcttaaacccaggag i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6991784 308 - 7304997 Agggaggctgaggcaggaggattacttgaggccaggagttcaagaccagcccaggtagcacaccaaaaccccatctgtat-------------ataaaaaaaaaatttaaatattgggtgcagtagctcatgcctgtaatcccagcactttgggaggccgaggtgggctgatcacctgaggtcaggagttcaagaccagcttggccaacatggtaaaaccccgtctctactaaaagtacaaaaattaatagtatggtggcatgtgcctgtaatcccagctactcaggaggctgaggctggagaattgcttaaacccaggag i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9406779 307 - 11631747 tgggaggctgaggcaggaggattacttgaggccaggagttcgagaccagcccgggtagcacaccaaaaccccatctctat-------------aaaaaaaatg-ttttaaatattgggtgcagtagctcatgcctgtaatcccagcactttgggaggtcaaggtgggctgatcacctgaggccaggagttcaagaccagcttggccaacatagtaaaaccccatctctactaaaagtacaaaaattaatagtatggtggcatgtgcctgtaatcccagctactcaggaggctgaggctggagaattgcttaaacccaggag i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1892949 41 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804157 0 + 3286835 C e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122293 269 - 5279953 I e otoGar3.GL873602 8640661 189 + 8790067 I e canFam3.chr13 48027318 221 + 63241923 I a score=681233.000000 s hg38.chr4_KI270787v1_alt 90917 77 + 111943 gcagaggttgcagt-gagccaagattgcaccactgcactccagcctgggtgacagagcaagactctgtctcaaa--aat--------c s panTro5.chr4 119658187 77 - 194502333 gcagaggttgcagt-gagccaagattgcaccactgcactccagcctgggtgacagagcaagactctgtctcaaa--aat--------c i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072016 76 - 195804263 gcagaggttgcagt-gagccaagattgcaccactgcactccagcctgggtgacagagcaagactctgtctcaaa--aat--------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501021 77 - 17550833 gcagaggttgcagt-gagccaagattgcaccactgcactccagcctgggtgacagagcaagactctgtctcaaa--aat--------c i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370374 76 - 118206036 gcagcggttgcagt-gagccgagattgtaccactgcactccagcctgagtgacagagcaagactctgtgtcaaa--aat--------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111583646 85 - 190429646 gcagaggttgcagt-aagccgagattgcaccactgcactccagcgtgggtgacacagcaagactctgtctcaca--aattgaacaaac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110752827 85 - 189454096 gcagaggttgcagt-aagccgagattgcaccactgcactccagcgtgggtgacacagcaagactctgtctcaca--aattgaacaaac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319255 85 + 26754465 gcagaggttgcagt-aagccgagattgcaccactgcactccagcgtgggtgacacagcaagactctgtctcaca--aattgaacaaac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4220726 85 - 5137665 gcagaggttgcagt-gagccgagattgcaccgctgcactccagcctgggtgacacagcaagactctgtctcCCA--AATTGaacaaac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930148 81 - 135778131 gcagaggttgcagt-gagccgagattgcaccgcggcactccagcctgggtgacacagcaagactctgtctcaca--aattg----aac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2042621 85 + 2427316 gcagaggttgcagt-gagccgagattgcaccgctgcactccagcctgggtaacacagcaagactctgtctcaca--aaTTGaacaaac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338048 85 + 1448899 gcagaggttacagt-gagccgagactgcacaactacactccagcctgggtgacacagcaagactctgtctcaca--aattgaacaaac i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53045867 79 - 190850796 gcagaggttgcagt-gagtcaagattgcaccactaccctccagcctgggtgacagagcaagactctttatcacgaaaaTC-------- i calJac3.chr3 C 0 I 204 s saiBol1.JH378162 8205350 79 - 15139346 gcagagattgcagt-gagccaagattgcaccactgcactccagcctgagtgacagagcaagactctgtctgaaaTCAGTC-------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6992092 77 - 7304997 gcagaggttgcagt-gagccaagattgcaccactgcactccagcctgggtgacggagcaagactctgtctgaaa--aatc-------- i cebCap1.NW_016107439v1 C 0 I 4 s aotNan1.NW_018493494v1 9407086 75 - 11631747 gcagaggttgcagt-gagccaagattgcaccactgcactccagcctaggtgacagagtaaga--ctgtctgaaa--aatc-------- i aotNan1.NW_018493494v1 C 0 I 4 s otoGar3.GL873602 8640850 70 + 8790067 gcaggggtcccactcttgctcaggctggtccccaactcctgagctcaggtgatcca-ccagcctcggcctc----------------- i otoGar3.GL873602 I 189 C 0 e proCoq1.NW_012140747v1 1892949 41 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804157 0 + 3286835 C e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122293 269 - 5279953 I e canFam3.chr13 48027318 221 + 63241923 I a score=473064.000000 s hg38.chr4_KI270787v1_alt 90994 58 + 111943 aaacaaacaaac-aaacaaaatccaagcatggtggcatatgcctgtagtccgctatttg s panTro5.chr4 119658264 58 - 194502333 aaacaaacaaac-aaacaaaatccaagcatggtggcatatgcccgtagtcagctatttg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072092 55 - 195804263 ---caaacaaac-aaacaaaatccaagcatggtggcatatgcctgtagtcagctatttg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501098 58 - 17550833 aaacaaacaaac-aaacaaaatccaagcatggtggcatatgcctatagtcagctgtttg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370450 55 - 118206036 ---cgaacaaac-aaacaaaatccaagcatggtggcatgtgcctgtagtcagctacttg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111583731 59 - 190429646 aaacaaacaaacaaaacaaaatccaagcatggtggcaggtgcctgtagtcagctacttg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110752912 59 - 189454096 aaacaaacaaacaaaacaaaatccaagcatggtggcaggtgcctgtagtcagctacttg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319340 59 + 26754465 aaacaaacaaacaaaacaaaatccaagcatggtggcaggtgcctgtagtcagctacttg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4220811 58 - 5137665 aaacaaacaaac-aaacaaaatccaagcatggtagcatgtgcctgtagtcagctacttg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930229 58 - 135778131 aaacaaacaaac-aaacaaaatccaagcatggtggcaggtgcctgtagtcagctacttg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2042706 58 + 2427316 aaacaaacaaac-aaacaaaatccaagcatggtagcatgtgcctgtagtcagctacttg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338133 58 + 1448899 aaacaaacacac-acacaaaatccaagcatggtggcatgtgtctgtagtcagctacttg i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8205429 58 - 15139346 TAACAAATAAAC-ACACAAAAAccaagtacggtggcatatgcctgtagtcagatacttg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6992173 58 - 7304997 taacaaataaac-aaacaaaaaccaagtatgatggcatatgcctgtagtcagctacctg i cebCap1.NW_016107439v1 I 4 C 0 s aotNan1.NW_018493494v1 9407165 58 - 11631747 taacaaataaac-aaacaaaaaccaagtatggtggcatatgcctgtagtcagctacctg i aotNan1.NW_018493494v1 I 4 C 0 e proCoq1.NW_012140747v1 1892949 41 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804157 0 + 3286835 C e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122293 269 - 5279953 I e calJac3.chr3 53045946 204 - 190850796 I e otoGar3.GL873602 8640920 0 + 8790067 C e canFam3.chr13 48027318 221 + 63241923 I a score=950537.000000 s hg38.chr4_KI270787v1_alt 91052 129 + 111943 ggaagctgaggtgggaagattgcttgattccaggagtggaaggctgcagtaagctatgattatacca-tgcactccagcctgggaaac-acagcaagaccc---tgtctctaaaa-------aaaaataaa----aaataaataa s panTro5.chr4 119658322 130 - 194502333 ggaagctgaggtgggaagattgcttgattccaggagtggaaggctgcagtaagctatgattgtacca-tgcactccagcctgggaaac-acagcaagaccc---tgtctcTAAaa-------ataaataaat---aaataaataa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072147 130 - 195804263 ggaagctgaggtgggaagattgcttgattccaggagtggaaggctgccgtaagctatgattgtacca-tgcactccagcctgggaaac-acagcaagaccc---tgtctctaaaa-------ataaaaaaat---taataaataa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501156 128 - 17550833 ggaagctgaggtgggaagattgcttgattccaggagtggaagactgcagtaagctatgattgcacca-tgcactccagcctgggaaac-acagcaagaccc---tgtctctaaaa-------aaaaataaa-----aataaataa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370505 138 - 118206036 ggaggctgaggtgggaagattgcttgattccaggagtggaaggctgcagtaagctgtgattgcaccactgcactccagcctgggaaac-acagcaagaccc---tgtctctaaaataataataataataagt---aaataaataa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111583790 137 - 190429646 ggaggctaaggt-ggaagattgcttgattccaggagtggaaggctgcagtaagctatgattgcaccactgcactccagcctgggaaac-acagcaagaccc---tgtctctaaaaaaataataataataagt---aaataaataa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110752971 137 - 189454096 ggaggctaaggt-ggaagattgcttgattccaggagtggaaggctgcagtaagctatgattgcaccactgcactccagcctgggaaac-acagcaagaccc---tgtctctaaaaaaataataataataagt---aaataaataa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319399 137 + 26754465 ggaggctaaggt-ggaagattgcttgattccaggagtggaaggctgcagtaagctatgattgcaccactgcactccagcctgggaaac-acagcaagaccc---tgtctctaaaaaaaTaataataataagt---aaataaataa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4220869 137 - 5137665 ggaggctaaggt-ggaagattgcttgattccaggagtggaaggctgcagtaagctatgattgcaccactgcactccagcctgggaaac-acagcaagaccc---tgtctctaaaaaaataataataacaagt---aaataaataa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930287 137 - 135778131 ggaggctaaggt-ggaagatggcttgattccaggagtggaaggctgcagtaagctacgattgcaccactgcactccagcctgggaaac-acagcaagaccc---tgtctctaaaaaaataataataataagt---aaataaataa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2042764 137 + 2427316 ggaggctaaggt-ggaagattgcttgattccagaagtggaaggctgcagtaagctatgattgcaccactgcactccagcctgggaaac-acagcaagatcc---tgtctctaaaaaaaTaataataataagt---aaataaataa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338191 137 + 1448899 tgaggctaaggt-gaaagactgcttgatttcaggagtggaagactgcagtaagctatgattgcaccactgcactccagcctgggaaac-acagcaagaccc---tgtctctaaaaCaataataataataagt---aaataaataa i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8205487 140 - 15139346 ggaggctgaggtgggaagattgcttgaacccaggagtgtgaggctgcagtaagctatgattgcaccactgcacttcagcctggggaac-acagcaagaccc---tgtctctaaataaataa-ataaataaataaaaaataaataa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6992231 125 - 7304997 ggaggctgaggtgggaagattccttgaacccaggagtgtgaggctgcagtatgctatgactgcaccactgcacttcagcctggggaac-atagcaagaccc---tgtctctaaaaaaat----------------aaataaataa i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9407223 117 - 11631747 ggaggctgaggtgggaagattgcttgaactcaggagtgtgaggctgcagtaagctatgattgcaccattgcacttcagcctggggaac-atagcaagaccc---tgtctct------------------------aaataaataa i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8640920 49 + 8790067 -----ctagggtgctaggattac----------------------------aggcatga----gccactgtgc-ccagtcTGTGATT---------------------------------------------------------- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48027539 82 + 63241923 gaaagc--agattgtgtgactgcttggtttc-----------------------cataatagca----tgagcattggcttggcttcctacaataaatctcatatatatct---------------------------------- i canFam3.chr13 I 221 C 0 e proCoq1.NW_012140747v1 1892949 41 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804157 0 + 3286835 C e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122293 269 - 5279953 I e calJac3.chr3 53045946 204 - 190850796 I a score=459313.000000 s hg38.chr4_KI270787v1_alt 91181 49 + 111943 ataaaaTTGAAAAAGATGTGGCAATAAAGTCTCAAGGTAGGGGTGTCTT s panTro5.chr4 119658452 49 - 194502333 ataaaATTGAAAAAGATGTGGCAATAAAGTCTCAAGGTAGGGGTGTCTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072277 49 - 195804263 ataaaaTTGAAAAAGATGTGGCAATAAAGTCTCAAGGTAGGGGTGTCTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501284 49 - 17550833 ataaaaTTGAAAAAGATGTGGCAATAAAGACTCAAGGTAGGGGTGTCTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370643 49 - 118206036 ataaaATTTAAAAAGATGTGGCAATAAAGACTCAAGGTAGGGGTATCTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111583927 49 - 190429646 ataaaATTGAAAAAGACGCGGCAATAAAGACTCAAGGTAGGGGTATCTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753108 49 - 189454096 ataaaATTGAAAAAGACGCGGCAATAAAGACTCAAGGTAGGGGTATCTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319536 49 + 26754465 ataaaATTGAAAAAGACGCGGCAATAAAGACTCAAGGTAGGGGTATCTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221006 49 - 5137665 ataaaATTGAAAAAGACGCAGCAATAAAGACTCAAGGTAAGGGTATCTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930424 49 - 135778131 ataaaATTGAAAAAGACGTGGCAATAAAGACCCAGGGTAAGGGTATCTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2042901 49 + 2427316 ataaaATTGAAAAAGACGCAGCAATAAAGACTCAAGGTAAGGGTATCTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338328 49 + 1448899 ataaaATTGAAAAGGATGCGGCAATAAAGACTCAAGGTAGGGGTGTCTT i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8205627 48 - 15139346 ataaaGTTTAAAAAGATGTGGCAATAAAGACTCATCATA-GGGTATCTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6992356 48 - 7304997 acaaaTTTTAAAAAGATGTGGCAATAAAGACTCATCATA-GGGTTTCTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9407340 48 - 11631747 ataaaGTTTAAAAAGATGTGGCAATAAAGACTCAAGACA-GGGTATCTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1804157 49 + 3286835 ATAAAATTTAAAAATATGTGGCAATAAAGACTCAAGGTGGGGGTAAGCA i micMur3.chrUn_NW_017968520v1 C 0 I 1 s otoGar3.GL873602 8640969 49 + 8790067 ATAAAATTTTAAAAGATGTGGCAATAAAGACTTAAAGTTGGGGTAACCT i otoGar3.GL873602 C 0 I 1 s canFam3.chr13 48027621 28 + 63241923 at---------------------atatatcctcttagttctgtttttct i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1892949 41 + 4188776 I e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122293 269 - 5279953 I e calJac3.chr3 53045946 204 - 190850796 I a score=957754.000000 s hg38.chr4_KI270787v1_alt 91230 78 + 111943 AGAGAAAGGAGCATGCTGTGACCTCAAAATTAAAG-----TTGACAAACACCAATCCAGATGATCTCCAAGTTCCTTTCCTTT s panTro5.chr4 119658501 78 - 194502333 AGAGAAAGAAGCATGCTGTGACCTCAAAATTAAAG-----TTGACAAACACCAATCTAGATGATCTCCAAGTTCCTTTCCTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072326 78 - 195804263 AGAGAAAGAAGCATGCTGTGACCTCAAAATTAAAG-----TTGACAAACACCAATCTAGATGATCTCCAAGTTCCTTTCCTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501333 78 - 17550833 AGAGAAAGGAGCATGCTGTGACTTCAAAATTAAAG-----TTGACAAACACCAATCTAGATGATCTCCAAGTTCCTTTCCTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370692 78 - 118206036 AGGGAAAGGAGCATGCTGTGACTTCAAAGTTAAAA-----TTGAGAAACACCTGTCTAGATGATCTCCAAGTTCCTTTCCTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111583976 78 - 190429646 AGAGAAAGGAGCGTGCTGTGACTTCAAAGTTAAAG-----TTGAGAAACACCAGTCTAGATGATCTCCAAGTTCCTTTCCTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753157 78 - 189454096 AGAGAAAGGAGCGTGCTGTGACTTCAAAGTTAAAG-----TTGAGAAACACCAGTCTAGATGATCTCCAAGTTCCTTTCCTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319585 78 + 26754465 AGAGAAAGGAGCATGCTGTGACTTCAAACTTAAAG-----TTGAGAAACACCAGTCTAGATGATCTCCAAGTTCCTTTCCTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221055 78 - 5137665 AGAGAAAGGAGCGTGCTGTGACTTCAAAGTTAAAG-----TTGAGAAACACCAGTCTAGATGATCTCCAAGTTCCTTTCCTTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930473 78 - 135778131 AGAGAAAGGAGCGTGCTGTGACTTCAAAGTTAAAG-----TTGAGAAACACCAGTCTAGATGATCTCCAAGTTCCTTTCCTTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2042950 78 + 2427316 AGAGAAAGGAGCGTGCTGTGACTTCAAAGTTAAAG-----TTGAGAAACACCAGTCTAGATGATCTCCAAGTTCCTTTCCTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338377 78 + 1448899 AGAGAAAGGAGCGTGCTGTGACTTCAAAGTTAAAG-----TTGAGAGACACCAGTTTAGATGATCTCCAAGTTCCTTTCCTTT i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8205675 78 - 15139346 AGAGAAAGGAGTGTGATGTGACTTCAAAGTTAAAG-----TTGAGAAACATCAGTCCAGATGACCTCCAAGTTCCTTTCCTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6992404 78 - 7304997 AGAGAAAGGAGCGTGCTGTGACTTCAAAGTTAAAG-----TTGAGAAACACCAGTCCAGATGATCTCCAAGTTCCTTTCCTTT i cebCap1.NW_016107439v1 C 0 I 4751 s aotNan1.NW_018493494v1 9407388 78 - 11631747 AGAGAAAGAAGCATGCTGTAACTTCAAAGTTAAAG-----TTGAGAAACACCAGTCCAGATGATCTCCAAGATCCTTTCCTTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1804207 78 + 3286835 AGAGAAAGGAGCATGGCATGACTTCAACATTAAAG-----CTGAGAAAGGTCAGTCCAGATGATCTCCAAGTTGCTTTCCTTC i micMur3.chrUn_NW_017968520v1 I 1 C 0 s proCoq1.NW_012140747v1 1892990 78 + 4188776 AGAGAAGGGAGCATGGCATAACGTCAACATTAAAG-----TTGAAAAATACCAGCCCAGATGATCTCCTAGTTGTTTTTCTTT i proCoq1.NW_012140747v1 I 41 C 0 s otoGar3.GL873602 8641019 78 + 8790067 AGAGAAGGGGGTGTGGCATGAATTCAACATTAAAT-----TGGAGAAACATCGGCTCAGGTGATCTCCAGGTTGCTTTCCCTC i otoGar3.GL873602 I 1 C 0 s canFam3.chr13 48027649 67 + 63241923 ggagaa--------------ccctaaTGATTATAGACATTTTGAGAAGCCCCAGTACAGATGATCT--AAGTTTCTTCCCTTT i canFam3.chr13 C 0 C 0 e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122293 269 - 5279953 I e calJac3.chr3 53045946 204 - 190850796 I a score=45898.000000 s hg38.chr4_KI270787v1_alt 91308 4 + 111943 AGTT s panTro5.chr4 119658579 4 - 194502333 AGTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072404 4 - 195804263 AGTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501411 4 - 17550833 AGTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370770 4 - 118206036 AGTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584054 4 - 190429646 AGTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753235 4 - 189454096 AGTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319663 4 + 26754465 AGTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221133 4 - 5137665 AGTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930551 4 - 135778131 AGTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043028 4 + 2427316 AGTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338455 4 + 1448899 AGTT i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8205753 4 - 15139346 AATT i saiBol1.JH378162 C 0 I 4682 s aotNan1.NW_018493494v1 9407466 4 - 11631747 AATT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1804285 4 + 3286835 AGTT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1893068 4 + 4188776 AGTT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8641097 4 + 8790067 AGGG i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48027716 4 + 63241923 AGTT i canFam3.chr13 C 0 C 0 e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122293 269 - 5279953 I e cebCap1.NW_016107439v1 6992482 4751 - 7304997 I e calJac3.chr3 53045946 204 - 190850796 I a score=21239.000000 s hg38.chr4_KI270787v1_alt 91312 2 + 111943 GG s panTro5.chr4 119658583 2 - 194502333 GA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072408 2 - 195804263 GA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501415 2 - 17550833 GA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370774 2 - 118206036 GA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584058 2 - 190429646 GA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753239 2 - 189454096 GA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319667 2 + 26754465 GA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221137 2 - 5137665 GA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930555 2 - 135778131 GA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043032 2 + 2427316 GA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338459 2 + 1448899 GA i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8210439 2 - 15139346 GA i saiBol1.JH378162 I 4682 C 0 s aotNan1.NW_018493494v1 9407470 2 - 11631747 AA i aotNan1.NW_018493494v1 C 0 I 7532 s micMur3.chrUn_NW_017968520v1 1804289 2 + 3286835 GA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1893072 2 + 4188776 GA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8641101 2 + 8790067 CA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48027720 2 + 63241923 GA i canFam3.chr13 C 0 C 0 e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122293 269 - 5279953 I e cebCap1.NW_016107439v1 6992482 4751 - 7304997 I e calJac3.chr3 53045946 204 - 190850796 I a score=370280.000000 s hg38.chr4_KI270787v1_alt 91314 33 + 111943 AAAACCAATGGCT-TGATTTGGCCT-CACACAATT s panTro5.chr4 119658585 33 - 194502333 AAAACCAATGGCT-TGATGTGGTCT-CACACAATT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072410 33 - 195804263 AAAACCAATGGCT-TGATGTGGTCT-CACACAATT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501417 33 - 17550833 GAAACCAATGGCT-TGATTTGGTCT-CACACAATT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370776 33 - 118206036 AAAACCAATGGCT-TGATTTGGTCT-CACACAATT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584060 33 - 190429646 AAAACCAATAGCT-TGATTTGCTCT-CACACAATT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753241 33 - 189454096 AAAACCAATAGCT-TGATTTGCTCT-CACACAATT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319669 33 + 26754465 AAAACCAATAGCT-TGATTTGCTCT-CACACAATT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221139 33 - 5137665 AAAACCAATAGCT-TGATTTGCTCT-CACACAATT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930557 33 - 135778131 AAAACCAATAGCT-TGATTTGCTGT-CACACAATT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043034 33 + 2427316 AAAACCAATAGCT-TGATTTGCTCT-CACACAATT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338461 33 + 1448899 AAAACCAATAGCT-TGATTTGCTGT-CACACAATT i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8210441 33 - 15139346 AAAACCAATGGCT-TGAAGTGGTAT-CACACAATT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6997233 33 - 7304997 aaAACCAATGGCT-TGATTTGGTAT-CACACAATT i cebCap1.NW_016107439v1 I 4751 C 0 s aotNan1.NW_018493494v1 9415004 33 - 11631747 aaAACCAATGGCT-TGATTTGGTAT-TACACAATT i aotNan1.NW_018493494v1 I 7532 C 0 s micMur3.chrUn_NW_017968520v1 1804291 34 + 3286835 AAAACCAATGGCTTTGATGGGTCCT-AACACAATT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1893074 34 + 4188776 AAAACCAATGGCTTCGATGAGAACT-CACACAATT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8641103 33 + 8790067 GAAGCCAATGGCTCTGCTGTGTCCT-CACACAAT- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48027722 34 + 63241923 AACACCGGTGGCT-CTATTTGATCCACACACAGTT i canFam3.chr13 C 0 C 0 e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122293 269 - 5279953 I e calJac3.chr3 53045946 204 - 190850796 I a score=119605.000000 s hg38.chr4_KI270787v1_alt 91347 12 + 111943 gaggcagcacag s panTro5.chr4 119658618 12 - 194502333 gaggcagcacag i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072443 12 - 195804263 gaggcagcacag i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501450 12 - 17550833 gaggcagcacag i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370809 12 - 118206036 gaggcagcgcag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584093 12 - 190429646 GAAGCACCACAa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753274 12 - 189454096 GAAGCACCACAa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319702 12 + 26754465 GAAGCACCACAa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221172 12 - 5137665 GAAGCACCACAa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930590 12 - 135778131 GAAGCACCACAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043067 12 + 2427316 GAAGCACCACAa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338494 12 + 1448899 GAGGCACCACAa i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8210474 12 - 15139346 gaggcagcaagg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6997266 12 - 7304997 gaggcagcaagg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9415037 12 - 11631747 GAGGCAggaagg i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1804325 12 + 3286835 GAGGCAGCACAG i micMur3.chrUn_NW_017968520v1 C 0 I 825 s proCoq1.NW_012140747v1 1893108 12 + 4188776 GAGGCAGCACAG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8641136 6 + 8790067 -GAGCAG----- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48027756 12 + 63241923 GAGGCAGCACGG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4122562 12 - 5279953 ggaacaatacaa i dasNov3.JH568349 I 269 C 0 e mm10.chr5 76441754 2767 + 151834684 I e calJac3.chr3 53045946 204 - 190850796 I a score=2017169.000000 s hg38.chr4_KI270787v1_alt 91359 193 + 111943 tggagtgaacg-agcagtaaaatcagtattcggctcttatttctgccactcatcagctgtgtaaacaggagcgatttggttaactgctatggttctccatttatgaaggagtaaag-tcaaaaggtttgtttagctaacc---------------gctgtggctc-catctcatact-aacaattgctgatcctGGGCAGAACCTTGGAGTC s panTro5.chr4 119658630 193 - 194502333 tggagtgaacg-agcagtaaaatcagtattgggctcttatttctgccactcatcagctgtgtaaacaggagcgatttggttaactgctctggttctccatttatgaaggagtaaag-tcaaaaggtttgtttagctaacc---------------gctgtggctc-catctcatact-aacaattgctgatcctGGGCAGAACCTTGGAGTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072455 193 - 195804263 tggagtgaacg-agcagtaaaatcagtattgggctcttatttctgccactcatcagctgtgtaaacaggagcgatttggttaactgctctggttctccatttatgaaggagtaaag-tcaaaaggtttgtttagctaacc---------------gctgtggctc-catctcatact-aacaattgctgatcctGGGCAGAACCTTGGAGTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501462 193 - 17550833 tggagtgaacg-agcagtaaaatcagtattcggctcttatttctgccactcatcagctgtgtaaacaggagcgatttggttaactgctctggttctccatttatgaaggagtaaag-tcaaaaggtttgtttagctaacc---------------gctgtggctc-catctcatact-aacaattgctgatcctGGGCAGAACCTTGGAGTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69370821 193 - 118206036 tggagtgaatg-agcagtaacatcagtattctgctcttatttctgccattcatcagctgtgtaaacaggagcgatttgattaactgctctggttctccatttacgaaggagtaaag-tcaaaaggtttgtttagctaacc---------------cctgtggctc-catctcatact-aacaATTGCTTATCCTGGGCAGAACCTTGGAGTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584105 192 - 190429646 tggagtgaaca-agcagtaaaatcagtattctgctcttatttctgccactcatcagctgtgtaaacaggagcgatttggttaactgctctggttctccattt-tgaaggagtaaag-tcaaaaggtgtgtttagctaacc---------------gctgtggctc-catctcatact-aacaattgctgatcctGGGCAGGACCTTGGAGTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753286 192 - 189454096 tggagtgaaca-agcagtaaaatcagtattctgctcttatttctgccactcatcagctgtgtaaacaggagcgatttggttaactgctctggttctccattt-tgaaggagtaaag-tcaaaaggtgtgtttagctaacc---------------gctgtggctc-catctcatact-aacaattgctgatcctGGGCAGGACCTTGGAGTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319714 192 + 26754465 tggagtgaaca-agcagtaaaatcagtattctgctcttatttctgccactcatcagctgtgtaaacaggagcgatttggttaactgctctggttctccattt-tgaaggagtaaag-tcaaaaggtgtgtttagctaacc---------------gctgtggctc-catctcatact-aacaattgctgatcctGGGCAGGACCTTGGAGTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221184 192 - 5137665 tggagtgaaca-agcagtaaaatcagtattctgctcttatttctgccactcatcagctgtgtaaacaggagcgatttggttaactgctctggttctccattt-agaaggagtaaag-tcaaaaggtgtgtttagctaacc---------------gctgtggctc-catctcatact-aacaattgctgatcctGGGCAGGACCTTGGAGTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930602 192 - 135778131 tggagtgaaca-agcagtaaaatcagtattctgctcttatttctgccactcatcagctatgtaaacaggagcgatttggttaactgctctggttctccattt-TGAAGGAGTAAAG-TCAAAAGGTGTGTTTAGCTAACC---------------GCTGTGGCTC-CATCTCATACT-AACAATTGCTGATCCTGGGCAGGACCTTGGAGTC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043079 192 + 2427316 tggagtgaaca-agcagtaaaatcagtattctgctcttatttctgccactcatcagctgtgtaaacaggagcgatttggttaactgctctggttctccattt-tgaaggagtaaag-tcaaaaggtgtgtttagctaacc---------------gctgtggcac-catctcatact-aacaattgctgatcctGGGCAGGACCTTGGAGTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338506 193 + 1448899 tggagtgaatg-agcagtaaaatcagtattctgctcttatttctgccactcatcagctgtgtaaacaggagcgatttggttaactgctctggttctccttttatgaaggagtaaag-tcaaaaggtttgtttagctaacc---------------gctgtggctc-catctcatact-aacaACTGCTGATCCTGGGCAGGACCTTGGAGTC i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8210486 193 - 15139346 gggagtgaaca-agtactaaaatcagtattctggtcttatttctgccactcattagccatgtgaacaggagcgatttggctaactgctctggttctccatgtatggaggtataaag-tcaaaagatttgtttagctaacc---------------actggggctc-tatctcatgct-aacaattgctgatcctGGGCAGAATCTTGGAGTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6997278 207 - 7304997 tggagtgaaca-agcactaaaatcagtattctgctcttatttctgccactcattagctgtgtgaacaggagcaattcggttaactgctctggttctccatgtatgaaggtgcaaag-tcaaaaggtttgtttagctaaccactCATCTCATGCTAACTGGGGCCC-CATCTCATGCT-AACAATTGCTGATCCTGGG-AGAATCTTGGAGTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9415049 193 - 11631747 tggagtgaaca-agcagtaaaatcagtattctgctcttatttctgccactcattagctgtgtgaacaggagtgattcggttaactgctctggttctctatgtatgaaggtgtaaag-tcaaaaggtttgtttagctaacc---------------actggggctc-catctcatgct-aacaattgctgatcctGGGCAGAATCTTGGAGTC i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1893120 175 + 4188776 -------------------AATTTAATAttctgctcttatttctgccactaactagctgtgtaaagaggagtgattcagttaactaccctggttctccatttactaaggtgtaaagggaaagagtttttgttagctgacc---------------actgtggctc-catc-taTACT-AATAATCGCTGACCTTGGACAAGATCTTGGAGTC i proCoq1.NW_012140747v1 C 0 I 657 s otoGar3.GL873602 8641142 158 + 8790067 TGGAGTGATTG-AGCACTGAATTCAGTA-TCTCCtcttgtttctaccactaaccagctgtgtaaacagaagcaa-tcatttaactgctctagttcttgattCACTAGGGTGtagag----------------------------------------cagtggttctcaac-cttcct-aatgat-gtgaacctttaatacagtc-------- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48027768 137 + 63241923 TAAAATGAACAGGGCACTAAAATCAGGATTCTGCTTGCACTTCTGCCACTAACTAGCC--GTCAATATGAGCTTTCTGTT---------------------------------ACG-------------------TGACC---------------TCTGAGGTTC-CATCTATCACT-AACA----CTGATCCTGGGGAAGATCTTGGAGAT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4122574 177 - 5279953 agaagtgaaaagagcactaaattcaggattctgcttccgtttctggcactaactagctgtgtgaacatgagcaattaattcaatt--tgctgctttccatttgctacagtgtagag-tgaaagggtctat----ctgatc---------------tctaagactc-cG----ACACTGAACAGT--------CTCGGGGATATCTTGGAGGC i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76441754 2767 + 151834684 I e calJac3.chr3 53045946 204 - 190850796 I a score=85725.000000 s hg38.chr4_KI270787v1_alt 91552 8 + 111943 CACAGAGG s panTro5.chr4 119658823 8 - 194502333 CACAGAGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072648 8 - 195804263 CACAGAGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501655 8 - 17550833 CACAGAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69371014 8 - 118206036 CACGGAGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584297 8 - 190429646 CACAGAGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753478 8 - 189454096 CACAGAGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319906 8 + 26754465 CACAGAGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221376 8 - 5137665 CACAGAGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930794 8 - 135778131 CACAGAGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043271 8 + 2427316 CACAGAGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338699 8 + 1448899 CACAGAGG i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8210679 8 - 15139346 CACAGAGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6997485 8 - 7304997 CACAGAAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9415242 8 - 11631747 CACAGAGG i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8641300 8 + 8790067 cacagggg i otoGar3.GL873602 C 0 I 156 s canFam3.chr13 48027905 5 + 63241923 CATAG--- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4122751 8 - 5279953 CATAATGT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76441754 2767 + 151834684 I e calJac3.chr3 53045946 204 - 190850796 I a score=745657.000000 s hg38.chr4_KI270787v1_alt 91560 72 + 111943 -ATCAGAAAGTCCTAAGGGGGCCTCCTGAGCGCTTCCAGCACTATAATGTCTGCCCTGTCACAGGCTGGCCAG s panTro5.chr4 119658831 72 - 194502333 -ATCAGAAAGTCCTAAGGGGGCCTCCTGAGCGCTTCCAGCACTATAATGTCTGCCCTGTCACAGGCTGGCCAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072656 72 - 195804263 -ATCAGAAAGTCCTAAGGGGGCCTCCTGAGCGCTTCCAGCACTATAATGTCTGCCCTGTCACAGGCTGGCCAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501663 72 - 17550833 -ATCAGAAAGTCCTAAGGGGGCCTCCTGAGCACTTCCAGCACTATAATATCTGCCCTGTCACAGGCTGGCCAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69371022 71 - 118206036 -ATCAGAAAGTCCTAAGGGGGCCTCCTGAGCACCTCCAGCCCTGTAATGTCTGCCCTGTCA-AGGCTGGCcag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584305 72 - 190429646 -ATCAGAAAGTCCTAAGGGGGCCTCCTGAGCACCTCCAGCACTATAATGTCTGCCCTGTCACAAGCTGGCcag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753486 72 - 189454096 -ATCAGAAAGTCCTAAGGGGGCCTCCTGAGCACCTCCAGCACTATAATGTCTGCCCTGTCACAAGCTGGCcag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319914 72 + 26754465 -ATCAGAAAGTCCTAAGGGGGCCTCCTGAGCACCTCCAGCACTATAATGTCTGCCCTGTCACAAGCTGGCcag i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221384 72 - 5137665 -ATCAGAAAGTCCTAAGGGGGCCTCCTGAGTGCCTCCAGCACTATAATGTCTGCCCTGTCACAGGCTGGCCGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930802 72 - 135778131 -ATCAGAAAGTCCTAAGGGGGCCTCCTGAGCGCCTCCAGCACTATAATGTCTGCCCTGTCACAGGCTGGCCGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043279 72 + 2427316 -ATCAGAAAGTCCTAAGGGGGCCTCCTGAGTGCCTCCAGCACTATAATGTCTGCCCTGTCACAGGCTGGCTGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338707 72 + 1448899 -ATCAGAAAGTCCTAAGAGGGCCTCCTGAGCGCCTCCAGCACTATAATGTCTGCCCTGTCACAGGCTGGCcag i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8210687 72 - 15139346 -ATCAGAAGGTCCTGAGGGGGCCTCCCGAGCGCCTCCAGCACTATAATGTCTGCCCTATCACAGGCTGGCCAG i saiBol1.JH378162 C 0 I 230 s cebCap1.NW_016107439v1 6997493 71 - 7304997 -ATCAGAAGGTCCTGA-GAGGCCTCCTGAGCGCCTCCAGCACTATAATGTCTGCCCTGTCATAGGCTGCCCAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9415250 72 - 11631747 -ATCAGAAGGTCCTGAGGGGGCCTCCTGAGTGCCTCTAGCACTATAATGTCTGCCCTGTCACAGGCTGGCCAG i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48027910 64 + 63241923 ---------GTTCTAAGAATGTCTCCAAAGCACCTCCAGCACTAGAATGTTCAGCCAGTCACAGGTTGGCTAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4122759 73 - 5279953 GTCCATAAGGTTCTGAGAATGCCTGCAGAGCACCGCCAACTTGAAAATGCCTACCTAGTCACAGGCTGGCCAG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76441754 2767 + 151834684 I e calJac3.chr3 53045946 204 - 190850796 I e otoGar3.GL873602 8641308 156 + 8790067 I a score=13600.000000 s hg38.chr4_KI270787v1_alt 91632 1 + 111943 C s panTro5.chr4 119658903 1 - 194502333 C i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072728 1 - 195804263 C i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501735 1 - 17550833 C i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69371093 1 - 118206036 c i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584377 1 - 190429646 c i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753558 1 - 189454096 c i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319986 1 + 26754465 c i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221456 1 - 5137665 C i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930874 1 - 135778131 C i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043351 1 + 2427316 C i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338779 1 + 1448899 c i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8210989 1 - 15139346 c i saiBol1.JH378162 I 230 C 0 s cebCap1.NW_016107439v1 6997564 1 - 7304997 C i cebCap1.NW_016107439v1 C 0 I 243 s aotNan1.NW_018493494v1 9415322 1 - 11631747 C i aotNan1.NW_018493494v1 C 0 I 239 s canFam3.chr13 48027974 1 + 63241923 C i canFam3.chr13 C 0 I 89 s dasNov3.JH568349 4122832 1 - 5279953 C i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76441754 2767 + 151834684 I e calJac3.chr3 53045946 204 - 190850796 I e otoGar3.GL873602 8641308 156 + 8790067 I a score=-3016.000000 s hg38.chr4_KI270787v1_alt 91633 2 + 111943 AG s panTro5.chr4 119658904 2 - 194502333 AG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072729 2 - 195804263 AG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501736 2 - 17550833 AG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69371094 2 - 118206036 tc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584378 2 - 190429646 tc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753559 2 - 189454096 tc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319987 2 + 26754465 tc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221457 2 - 5137665 Tc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930875 2 - 135778131 Tc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043352 2 + 2427316 Tc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338780 2 + 1448899 tc i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8210990 2 - 15139346 ag i saiBol1.JH378162 C 0 C 0 s dasNov3.JH568349 4122833 2 - 5279953 AC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76441754 2767 + 151834684 I e aotNan1.NW_018493494v1 9415323 239 - 11631747 I e cebCap1.NW_016107439v1 6997565 243 - 7304997 I e calJac3.chr3 53045946 204 - 190850796 I e otoGar3.GL873602 8641308 156 + 8790067 I e canFam3.chr13 48027975 89 + 63241923 I a score=30433.000000 s hg38.chr4_KI270787v1_alt 91635 3 + 111943 tct s panTro5.chr4 119658906 3 - 194502333 tct i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072731 3 - 195804263 tct i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501738 3 - 17550833 tct i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69371096 3 - 118206036 tct i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584380 3 - 190429646 tct i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753561 3 - 189454096 tct i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319989 3 + 26754465 tct i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221459 3 - 5137665 tct i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930877 3 - 135778131 tct i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043354 3 + 2427316 tct i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338782 3 + 1448899 tct i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53046150 3 - 190850796 tct i calJac3.chr3 I 204 C 0 s saiBol1.JH378162 8210992 3 - 15139346 cct i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6997808 3 - 7304997 tct i cebCap1.NW_016107439v1 I 243 C 0 s dasNov3.JH568349 4122835 3 - 5279953 CCT i dasNov3.JH568349 C 0 I 102 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76441754 2767 + 151834684 I e aotNan1.NW_018493494v1 9415323 239 - 11631747 I e otoGar3.GL873602 8641308 156 + 8790067 I e canFam3.chr13 48027975 89 + 63241923 I a score=10500.000000 s hg38.chr4_KI270787v1_alt 91638 1 + 111943 c s panTro5.chr4 119658909 1 - 194502333 c i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072734 1 - 195804263 c i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501741 1 - 17550833 c i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69371099 1 - 118206036 c i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584383 1 - 190429646 c i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753564 1 - 189454096 c i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319992 1 + 26754465 c i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221462 1 - 5137665 c i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930880 1 - 135778131 c i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043357 1 + 2427316 c i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338785 1 + 1448899 c i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53046153 1 - 190850796 c i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8210995 1 - 15139346 c i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6997811 1 - 7304997 c i cebCap1.NW_016107439v1 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122838 102 - 5279953 I e aotNan1.NW_018493494v1 9415323 239 - 11631747 I e otoGar3.GL873602 8641308 156 + 8790067 I e canFam3.chr13 48027975 89 + 63241923 I a score=1177970.000000 s hg38.chr4_KI270787v1_alt 91639 126 + 111943 ga-gtagctgggattacagacacacgccaccacacccggctaatttttgtatttttagtggagatgggggtttcctcatgttggccaggctggtctcgaactcctgacctcaggtgatccgcctgcc s panTro5.chr4 119658910 126 - 194502333 ga-gtagctgggattacagacacacgccaccacacccggctcatttttgtatttttagtggagatgggggtttcatcatgttggccaggctggtctcgaactcctgacctcaggtgatctgcctgcc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072735 126 - 195804263 ga-gtagctgggattacagacacacgccaccacacccggctaatttttgtatttttagtggagatgggggtttcatcatgttggccaggctggtctcgaactcctgacctcaggtgatctgcctgcc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501742 125 - 17550833 ga-gtagctgggattacagacacacgccaccacg-ctggctaatttttgtatttttagtggagatgggggtttcatcatgttggccaggctggtctcgaactcctgacctcaggtgatctgcctgcc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69371100 125 - 118206036 aa-gtagctgggattacagacacacgccaccacacccagctaatttttgtatttttagtggagat-ggggtttcatcatgttggccaggctggtctcgaactcctgacctcaggtgattcgcccgcc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584384 125 - 190429646 ga-gtagctgggattacagacacatgccaccacacctggctaatttttgtatttttagtggagat-gcgatttcatcatgttggccaggctggtctcgaacttctgacctcaggtgatccgccagcc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753565 125 - 189454096 ga-gtagctgggattacagacacatgccaccacacctggctaatttttgtatttttagtggagat-gggatttcatcatgttggccaggctggtctcgaacttctgacctcaggtgatccgccagcc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13319993 125 + 26754465 ga-gtagctgggattacagacacatgccaccacacctggctaatttttgtatttttagtggagat-gggatttcatcatgttggccaggctggtctcgaacttctgacctcaggtgatccgccagcc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221463 125 - 5137665 ga-gtagctgggattacagacacatgccaccacacccggctaatttttgtatttttagtggagat-gggatttcatcatgttggccaggctggtctcgaacttctaacctcaggtgatccgcccacc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122930881 125 - 135778131 ga-gtagctgggattacagacacattccaccacacccagctgatttttatatttttagtggagat-gggatttcatcatgttggccaggctggtctcgaacttctgacctcaggtgatccgcctgcc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043358 124 + 2427316 ga-gtagctgggattacagacacatgccaccaca-ccagctaatttttgtatttttagtggagat-gggatttcatcatgttggccaggctggtctcgaacttctgacctcaggtgatccgcccaac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338786 125 + 1448899 ga-gtagctgggattacagacacatgccaccacacccggttaatttttgtatttttagtggagat-gggatttcatcatgttggccaggctggtcttgaacttctgacctcaggtgatctgcctgcc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53046154 123 - 190850796 ag-gtagctaggattgcagacacgcaccaccacaccctgctaatttttgta-ttttagtggaggt--gggtttcaccatgttggccacgctggtcttgaactcctgacctcaggtgacccactcacc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8210996 124 - 15139346 tgagtagctggcattgcagacacgcaccaccacgtgtagctaatttttatatttttagtggagat--gggtttcaccat-ttggccaggctggtcttgaactcctgacctcaggtgacccacccacc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6997812 124 - 7304997 ga-gtagctgggattgcagacacgcaccaccacacccagctaatttttgtatttttagtggagat--gggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgacccacccacc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9415562 124 - 11631747 ga-gtcgctgggattgcagacatgcaccaccacacccggataatttttgtatttttagtggagat--gggtttcaccatgttggccaggctggtcttcaactcctgacctcaggtgacccacccacc i aotNan1.NW_018493494v1 I 239 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122838 102 - 5279953 I e otoGar3.GL873602 8641308 156 + 8790067 I e canFam3.chr13 48027975 89 + 63241923 I a score=504444.000000 s hg38.chr4_KI270787v1_alt 91765 49 + 111943 ttggcctccca-----------aagttctgggattacaggcatgagccactgcacccggc s panTro5.chr4 119659036 49 - 194502333 ttggcttccca-----------aagttctgggattacaggcatgagccactgcacccggc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072861 49 - 195804263 ttggcttccca-----------aagttctgggattacaggcatgagccactgcacccggc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501867 49 - 17550833 ttggcctccca-----------aagttctgggattacaggcatgagccactgcacccggc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69371225 49 - 118206036 ttggcctccca-----------aagtgctgggattacaggcatgagccactgcacccggc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584509 49 - 190429646 tcagcctccca-----------aagtgctgggattacaggcatgagccactgcacccagc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753690 49 - 189454096 tcagcctccca-----------aagtgctgggattacaggcatgagccactgcacccagc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13320118 49 + 26754465 tcagcctccca-----------aagtgctgggattacaggcatgagccactgcacccagc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221588 49 - 5137665 tcagcctccca-----------aagtgctgggattacaggcatgagccactgtacccagc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122931006 49 - 135778131 tcggcctccca-----------aagtgctgggattacaggcatgagccactgcacccagc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043482 49 + 2427316 tcagcctccca-----------aagtgctgggattacaggcatgagccactgtacccagc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338911 49 + 1448899 tcggcctccca-----------aagtgctgggattacaggcatgagccactgcacccagc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53046277 49 - 190850796 ttggcctgcca-----------aagtgctgggattacaggcatgagccactgcacccagT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8211120 49 - 15139346 ttggcctccca-----------aagtgttgggattacaggcatgagccactgcacccagT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6997936 49 - 7304997 ttggcctccca-----------aagtgctgggattacaggcatgagccactgcgcccagT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9415686 49 - 11631747 ttggcctccca-----------aagtgctgggattataggcatgagccactgcacccagT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8641464 56 + 8790067 TTGGCCTTCCATAATAAGACATAGTTAATTTAATAATGGGAATGTG----TGGAAAAAAT i otoGar3.GL873602 I 156 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76441754 2767 + 151834684 I e dasNov3.JH568349 4122838 102 - 5279953 I e canFam3.chr13 48027975 89 + 63241923 I a score=99860.000000 s hg38.chr4_KI270787v1_alt 91814 8 + 111943 TGGGTTTG s panTro5.chr4 119659085 8 - 194502333 TGGGTTTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072910 8 - 195804263 TGGGTTTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501916 8 - 17550833 TGGGTTTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69371274 8 - 118206036 TGGGTTTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584558 8 - 190429646 TAGGTTTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753739 8 - 189454096 TAGGTTTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13320167 8 + 26754465 TAGGTTTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221637 8 - 5137665 TAGGTTTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122931055 8 - 135778131 TAGGTTTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043531 8 + 2427316 TAGGTTTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338960 8 + 1448899 TAGGTTTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53046326 8 - 190850796 TGGGTTTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8211169 8 - 15139346 TGGGTTTG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6997985 8 - 7304997 TGGGTTTG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9415735 8 - 11631747 TGGGTTTG i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8641520 8 + 8790067 TTGGTTTT i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4122940 8 - 5279953 TAGGTTTG i dasNov3.JH568349 I 102 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76441754 2767 + 151834684 I e canFam3.chr13 48027975 89 + 63241923 I a score=3925339.000000 s hg38.chr4_KI270787v1_alt 91822 347 + 111943 At-ttttttttttttttttG---ATTGCTGGAAATACATGA--TTTGTTTTCTCCTTTGCCCTTCACATTGAATTTGTTACCAATAAAATATCTGGAATCCATCTCCTATTTGGTATCTTGATGGCTAGTGCTTTGGTTCAGGGTCCACTGATG--AGTTTCCCAACTG--CTCCCCAATTCCA-TTTTGTCTTCCCTTTGCTAATAGCAC---------CCCCACATCACCA---CAG-TCATCTATTTAGAAGTTAATCTGATCCATCTCCTCC-CTACGTAAAAACCCTCAATGAGCTCTACTGCCTGTAGCATT--AAGTCCAGAATCTTTAGCATTTTTTCTAATACTGTATCTCACCTTAACTGGCAC s panTro5.chr4 119659093 345 - 194502333 A---TTTTTTTTTTTTTTTG---ATTGCTGGAAATACATGA--TTTGTTTTCTCCTTTGCCCTTCACATTGAATTTGTTACCAATAAAATATCTGGAATCCATCT-CTATTTGGTATCTTGATGGCTAGTGCTTTGGTTCAGGGTCCACTGATG--agtttcccaactg--ctccccaattccatttttgtcttccctttgctaatagcac---------ccccacatcacca---cag-tcatctatttagaagttaatctgatccatctcctcc-ctacgtaaaaaccctcaatgagctctactgcctgtagcgtt--aagtccagaatctttaGCATTTTTTCTAATACTGTATCTCACCTTAACTGGCAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121072918 342 - 195804263 A------TTTTTTTTTTTTG---ATTGCTGGAAATACATGA--TTTGTTTTCTCCTTTGCCCTTCACATTGAATTTGTTACCAATAAAATATCTGGAATCCATCT-CTATTTGGTATCTTGATGGCTAGTGCTTTGGTTCAGGGTCCACTGATG--agtttcccaactg--ctccccaattccatttttgtcttccctttgctaatagcac---------ccccacatcacca---cag-tcatctatttagaagttaatctgatccatctcctcc-ctacgtaaaaaccctcaatgagctctactgcctgtagcgtt--aagtccagaatctttaGCATTTTTTCTAATACTGTATCTCACCTTAACTGGCAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4501924 345 - 17550833 A---TTTTTTTTTTTTTTTG---ATTGCTGGAAATACATGA--TTTGTTTTCTCCTTTGCCCTTCACATTGAATTTGTTACCAACAAAATATCTGGAATCCATCTCCTATTTGGTATCTTGATGGCTAGTGCTTTGGTTCAGGGTCCACTGATG--AGTTTCCCAACTG--CTCCCCAATTCCA-TTTTGTCTTCCCTTTGCTAATAGCAC---------CCCCACATCACCA---CAG-TCATCTATTTAGAAGTTAATCTGATCCATCTCCTGC-CTACTTAAAAACCCTCAATGAGCTCTACTGCCTGTAGCGTT--AAGTCCAGACTCTTTAGCATTGTTTCTAATACTGTATCTCACCTTAATTGGCAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69371282 340 - 118206036 A-------TTTTTTTTTTTA---ATTGCTGGAAATACATGA--TTTGTTTTCTCCTTTGCCCTTCACATTGAATTTGTTACCAGTAAAATATCTGGAATCCATCTCCTATTTGGTATCTTGATGGCTAGTGCCTTGGTTCAGGGTCCACTGACG--agtttcccaactg--ctctccaattcca-ttttgtcttgcctttgctaatagcac---------ccccacatcacca---cag-tcatctatttagaagttaatctgatccatttcctct-ctacttaaaaaccctcaatgagctctactgcccgtagagtt--aagtccagactctttGGCATTGTTTCTAATACCGTATCTCACCTTAATT-GCAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584566 342 - 190429646 A-----TTTTTTTTTTTTTA---ATTGCTAGAAATATGTGA--TTTGTTTTCTCTTTTTCCCTTCACATTGAATTTGTTACCAATAAAATATCTGTAATCCATTTCCTATTTGGTATCTCGATGGCTAGTGGCTTGGTTCAGGGTCCACTGATG--agtttcccaactg--ctctccaattcca-ttttgtcttccctttgctaatagcac---------ccccacatcacca---cag-tcatttatttagaagttaa-ctgatccatttcctcc-ctgctcaaaaaccttcagtgagctctactgcctgtagtgtt--aagtccagactctttaGCATTGTTTCTAATACTGTGTCTCACCTTAATTGGCAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110753747 342 - 189454096 A-----TTTTTTTTTTTTTA---ATTGCTAGAAATATGTGA--TTTGTTTTCTCTTTTTCCCTTCACATTGAATTTGTTACCAATAAAATATCTGTAATCCATTTCCTATTTGGTATCTCGATGGCTAGTGGCTTGGTTCAGGGTCCACTGATG--agtttcccaactg--ctctccaattcca-ttttgtcttccctttgctaatagcac---------ccccacatcacca---cag-tcatttatttagaagttaa-ctgatccatttcctcc-ctgctcaaaaaccttcagtgagctctactgcctgtagtgtt--aagtccagactctttaGCATTGTTTCTAATACTGTGTCTCACCTTAATTGGCAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13320175 342 + 26754465 A-----TTTTTTTTTTTTTA---ATTGCTAGAAATATGTGA--TTTGTTTTCTCTTTTTCCCTTCACATTGAATTTGTTACCAATAAAATATCTGTAATCCATTTCCTATTTGGTATCTCGATGGCTAGTGGCTTGGTTCAGGGTCCACTGATG--agtttcccaactg--ctctccaattcca-ttttgtcttccctttgctaatagcac---------ccccacatcacca---cag-tcatttatttagaagttaa-ctgatccatttcctcc-ctgctcaaaaaccttcagtgagctctactgcctgtagtgtt--aagtccagactctttaGCATTGTTTCTAATACTGTGTCTCACCTTAATTGGCAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221645 340 - 5137665 A-------TTTTTTTTTTTA---ATTGCTAGAAATACGTGA--TTTGTTTTCTCCTTTTCCCTTCACATTGAGTTTGTTACCAATAAAAGATCTGTAATCCATTTCCTATTTGGTATCTCGATGGCTAGTGGCTTGGTTCAGGGTCCACTGATG--agtttcccaactg--ctctccaattcca-ttttgtcttccctttgctaatagcac---------ccccacatcacca---cag-tcatttatttagaagttaa-ctgatccatttcctcc-ctgctcaaaaaccttcagtgagctctactgcctgtagtgtt--aagtccagactctttaGCATTGTTTCTAATAGTGTGTCTCACCTTAATTGGCAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122931063 339 - 135778131 A--------TTTTTTTTTTA---ATTGCTAGAAATACATGA--TTTGTTTTCTCCTTTTCCCTTCACATTGAATTTGTTACCAATAAAATATCTGTAATCCATTTCCTATTTGGTATCTTGATGGCTAGTGGCTTGGTTCAGGGTCCACTGATG--AGTTTCCCAACTA--CTCTCCAATTCTA-TTTTGTCTTCCCTTTGCTAATAGCAC---------CCCCACATCACCA---CAG-TCATTTATTTAGAAGTTAA-CTGATCCATTTCCTCC-CTGCTCAAAAACCTTCAGTGAGCTCTACTGCCTGTAGTGTT--AAGTCCAGACCCTTTAGCATTGTTTCTAATCCTGTGTCTCACCTTAATTGGCAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043539 348 + 2427316 A--------TTTTTTTTTTA---ATTGCTAGAAATACGTAA--TTTGTTTTCTCCTTTTCCCTTCACATTGAGTTTGTTACCAATAAAATATCTGTAATCCATTTCCTATTTGGTATCTTGATGGCTAGTGGCTTGGTTCAGGGTCCACTGATG--AGTTTCCCAACTG--CTCTCCAATTCCA-TTTTGTCTTCCCTTTGCTAATAGCACCCCACATCACCCCACATCACCA---CAG-TCATTTATTTAGAAGTTAA-CTGATCCATTTCCTCC-CTGCTCAAAAACCTTCAGTGAGCTCTACTGCCTGTAGTGTT--AAGTCCAGACTCTTTAGCATTGTTTCTAATAGTGTGTCTCACCTTAATTGGCAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1338968 339 + 1448899 A------TTTTTTTTTTTTA---ATTGCTAGAAATACATGA--TTTATTTTCTCCTTTTCCCTTCACATTGAATTTGTTACCAATAAAATATCTGTAATCCATTTCCTATTTGGTATCTTGATGGCTAGTGGCTTGGTTCAGGGTCCACTGATG--AGTTTCCCAACTG--CTCTCCAATTCCA-TTTTGTCTTCCCTTTGCTAATAGCAC---------CCCCACATCACCA---CAG-TCATCTGTTTAGAAGTTAA-CTGATCCATTTCCTCT-CTACTTAAAAACCCTCAATGAGCTCTACTGCCTGTAGTGTT--AAGTCCAGACTC--TAGCATTGTTTCTAATACTGTGTCTCACCTTAACTGGCAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53046334 344 - 190850796 A--------TTTTTTTTTTTTTAATTGCTAGAAATACATGA-TTTTTTTTTCTCCTTTGCCCTTCATATTGAATTTGTTACCAATAAAATATCTGGAACCCATCTCCTATTTGACATCTCGATGGCTAGTGCCTTGGTTCAGGGTCCACTGATG--AGTCTCCCAACTG--CTCTCCAATTCCT-TTTTGCCTTCCCTTTGCTCAGAGCAC---------CCCCACATCACCA---CAG-TCATCTATTTAGAAGTTAATCTGATCCATCTCCTCC-CTACTTAGAAACCCTCGATGAGTTCTGCTGCCTGTAGACTT--AAGTCCAGACTGTTTAGCATAGTTTCTAATCCCCTATCTCACCTTAAGTGACAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8211177 340 - 15139346 A--------TTTTTTTTTTC---ATTGCTAGAAATACATGA--TCTTTTTTCTACTTTGCCCTTCATACTGAATTTGTTACCAATAAAATATCTGGAATCCATCTCCTATTTGACATCTCGATGGCTAGTGCCTTGGTTCAGGGTCCACTGATC--AGTCTCCCAACTA--CTCTCCAATTCCA-TTTTGTCTTCCCTTTGCTAAGAGCAC---------CCCCACATCACCA---CAC-TCATCTATTTAGAAGTTAATCTGATCCATCTCCTCC-CTACTTAAAAACCCTCAATGAGTTCTGCTGCCTGTAGACTT--AAATCCAGACTGTTTAGCATAGTTTCTAATACCTTATCTCACCTTAAGTGACGC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6997993 340 - 7304997 A--------TTTTTTTTTTA---ATTGCTAGAAATACATGA--TTTTTTTTCTCCTTTGCCCTTCATATTGAATTTTTTGCCAATAAAATATCTGGAATCCATCTCCTATTTGACATCTCAATGGCCAGTGCTTTGGTTCAGGGTCCACTGATG--AGTCTCCCAACTG--CTCTCCAATTCCA-TTTTGTCTTCCCTTTGCTAAGAGCAC---------CCCCACATCACTA---CAG-TCATCTATTTAGAAGTTCATCTGATCCATCTCCTCC-CTACTTAAAAACCCTCAATGAGTTCTGCTGCCTGTAGACTT--AAGTCCAGACTGTTTATCATAGTTTCTAATACCCTATCTCACCTTAAGTGACGC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9415743 342 - 11631747 A--------TTTTTTTTTTA---ATTGCTAGAAATACATTAATTTTTTTTTCTCCTTTGCCCTtcatattgaatttgttaccaataaaatacctggaatccatctcttatttgacatctccatggcttgtgccttggttcagggtccactgatg--agtctcccaactg--ctctccaattcca-ttttgtcttccctttgctaagagcac---------ccgcacatcatca---cag-tcatctatttagaagttaatctgatccatctccccc-ctacttaaaaaccctcaatgagttcTGCTGCCTGTAGACTT--AAGTTCAGACTGTTTAGCATAGTTTCTAATACCCTATCTCACCTTAAGTGACGC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8641528 313 + 8790067 A----------TTTTTTTTA---ATTGCTAGAAATACATAT--TT--TTTTCTCTTTTGCCTTTCTCATTGAATATG---CTAATAAAATATCTATAATCC--------------------ACAGCTGGTGCCTTGGGCCAGGATCCACTGATG--AGTCTCCCAGCTG--TTCTCCAATTTCA-TTTTGTCTTTACTCTGGTAAAACAGC---------CCCCATGTCACCA--CCAG-CCATCTGTCTAAATGTTAATCTGATCCATCCCCTAT-CTCCTTAAAAGTC-TCAATGAGCTCTACTGCCTGTAAAATT--AAGTTCAAACTTTCTAACATCATTTCTAATGCTGTATCTCACCTCAGTTGACAT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48028064 348 + 63241923 -aatttaatttttattGAAA---ATTCTTAGAAATGCATC---TCTTCTTTTTCCTTTGCCCTTCTCATTGAATTTATTGCCAGTAAAACATCTTGAATCCATCTCTTAATTGGTACACCCAGGCCCAGTGCCTTGGTCCAAGACCTGCTCATT--AATCTCGCAATTA--TTCTCCAAATCCA-TGTTGTCTTTTCT---CTAATACAGC---------CCACACATCATCACACCAG-TCACCTATATAAATGTTCATGTGATCCATCTCCCTC-CTACTTACAGACCATCAAAGAGCTCTACTGCCTGTAGAATCTGTAGTCCAGATTCTTTAGCATTGTTTTCAGTGTCATATCTGACCTGAAGTGACTT i canFam3.chr13 I 89 C 0 s dasNov3.JH568349 4122948 327 - 5279953 -------ATTTTTACTGAAA---ATTTTTAGAAATACATGT--TC---TTTCTCTTTCACCCTTTTTGCTGAATTTGTTACCACCAAAATATGTTGAATCCATAAACT--TTGCTGTCCCCACTGCGAGTG--------------CCACTGCTGGTGGTCTCCCAGCTGGTTTCCCTGATTTCA-TTTGGTCCTTCCCCTGCTACCATAGC---------TCCCACAACTCCA---TGGAACATCTATCTAAATGTCAAGCTGATCTGCCTCCCCCACTGCTTAAAAACGTTCAATTAGCTCCACAGCCTGGAGAGCA--AAGT-CAGACTCCTTAATATTATTTCTACTACCGTATCTAATCTTAACTGACAT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76441754 2767 + 151834684 I a score=1097895.000000 s hg38.chr4_KI270787v1_alt 92169 85 + 111943 TTTCAAAATCAACCCCAGCAAA----TGCTCCCATCTTTCAAGACCTTGTTACTTAGAGGTGTTTGGATCTGAGGATCAGCAAATCCTA s panTro5.chr4 119659438 85 - 194502333 TTTCAAAATCAACCCCAGCAAA----TGCTCCCATCTTTCAAGACCTTGTTACTTAGAGGTGTTTGGATCTGAGGATCAGCAAATCCTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121073260 85 - 195804263 TTTCAAAATCAACCCCAGCAAA----TGCTCCCATCTTTCAAGACCTTGTTACTTAGAGGTGTTTGGATCTGAGGATCAGCAAATCCTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4502269 85 - 17550833 TTTCAAAATCAACCCCAGCAAA----TGCTCCCATCTTTCAAGACCTTGTTACTTAGAGGTGTTTGGATCTGAGGATCAGCAAATCCTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69371622 85 - 118206036 TTTCAAAATCAACCCCAGCAAA----TGCTCCCATCTCTCAAGACCTTGTTACTTAGAGGTGTTTGGATTTGAGGATCACCAAATCCTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584908 85 - 190429646 TTCCAAAATCAACCCCAGCAAA----TACTCCCATCTCTCAAGACCTTGTTACTTAGAGGTGTTTGGATTTGAGGATCACCAAATCCTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110754089 85 - 189454096 TTCCAAAATCAACCCCAGCAAA----TACTCCCATCTCTCAAGACCTTGTTACTTAGAGGTGTTTGGATTTGAGGATCACCAAATCCTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13320517 85 + 26754465 TTCCAAAATCAACCCCAGCAAA----TACTCCCATCTCTCAAGACCTTGTTACTTAGAGGTGTTTGGATTTGAGGATCACCAAATCCTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4221985 85 - 5137665 TTTCAAAATCAACCCCAGCAAA----TGCTCCCATCTCTCAAGACCTTGTTACTTAGAGGTGTTTGGATTTGAGGATCACCAAATCCTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122931402 85 - 135778131 TTTCAAAATCAACCCCAGCAAA----TGCTCCCATCTCTCAAGACCTTGTTACTTAGAGGTGTTTGGATTTGAGGATCACCAAATCCTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043887 85 + 2427316 TTTCAAAATCAACCCCAGCAAA----TGCTCCCATCTCTCAAGACCTTGTTACTTAGAGGTGTTTGGATTTGAGGATCACCAAATCCTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1339307 85 + 1448899 TTTCAAAATCAACCCCAGCAAA----TGCTCCCATCTCTCAAGACCTTGTTACTTAGAGGTGTTTGGATTTGAGGATCACCAAATCCTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53046678 85 - 190850796 TTCCAAAATCAACCCCAGCAAA----TGTTCCCATCTCCCAAGACTTTGTCACATTGGGGTGTTTGGATTTGAGGGTCACCAAATCCTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8211517 85 - 15139346 TTCCAAAATCAACACCATCAAA----TGTTACCATCTCCCAAGACCTTGCTACGTTGGGGTGTTTGGATTTGAGGGTCACCAAATCCTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6998333 85 - 7304997 TTCCAAAATCAACCCCAGCAAA----TGTTCCCATCTCCCAAGACCTTGTTACGTTGGGGTGTTTGGATTTGAGGGTCACCAAATCCTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9416085 85 - 11631747 TTCCAAAATCAATCCCAGCAAA----TGTTCCCATCTCCCAAGACCTTGTTATGTTGGAGTGTTTGGATTTGAGGGTCACCAAATCCTA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8641841 80 + 8790067 TTCCAAAACCAACCCTAACAAA----TGCTTCCATCTC-CAAGGCCTGTGCACTCA----CTTCTAGATTTGACAGTCTCCAAATCTAA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76444521 78 + 151834684 tttcaaaaccaaactcagcaaacacttcctcccactttcCAAG-----------TAAGGATATCTAGATTCAAGGATTTTCAAATTCAG i mm10.chr5 I 2767 C 0 s canFam3.chr13 48028412 85 + 63241923 TTCCAAAATCAATCCCAGCAAC----TGTTCTCACCTCCCAAAACCTTTACACTTAGAGACTTTTGGATTTAAGAATCTTCAAATCCgg i canFam3.chr13 C 0 I 109 s dasNov3.JH568349 4123275 85 - 5279953 TTCCAAATTCATCCCCAGCAAC----CACTCTCAACTCCCAAGACGTGTACCCTTGGGAACTTTTGGACTGGATGACTGCCAAATCCAA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I a score=1587045.000000 s hg38.chr4_KI270787v1_alt 92254 136 + 111943 TCTGACCATGACTC---------------------------------AATATAGAAATGAAAT----------------------------------------------------------GTTTTATTATTTATATACAAGCTGCTTTCTTAGCCTAAATGTTATCCTTTTTATATAAA-----------ATCTTTTACAAGAATATAA--TTTTTG---TAAATAATTAAAAAGAGTTCCT s panTro5.chr4 119659523 137 - 194502333 TCTGACCATGACTC---------------------------------AATATAGAAATTAAAT----------------------------------------------------------GTTTTATTATTTATATACAAGCTGCTTTCTTAGCCTAAATGTTATCCTTTTTACATAAA-----------ATCTTTTACAAGAATATAA-TTTTTTG---TAAATAATTAAAAAGAGTTCCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121073345 137 - 195804263 TCTGACCATGACTC---------------------------------AATATAGAAATTAAAT----------------------------------------------------------GTTTTATTATTTATATACAAGCTGCTTTCTTAGCCTAAATGTTATCCTTTTTATATAAA-----------ATCTTTTACAAGAATATAA-TTTTTTG---TAAATAATTAAAAAGAGTTCCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4502354 136 - 17550833 TCTGACCATGACTC---------------------------------AATACAGAAATGAAAT----------------------------------------------------------GTTTTATTACTTATATACAAGCTGCTTTCTTAGCCTAAATGTTACCCTTTTTATATAAC-----------ATCTTTTACAAGAATATAA--TTTTTG---TAAATAATCAAAAAGAGTTCCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69371707 135 - 118206036 TCTGACTATGACTC---------------------------------AATATAGAAATGAAAT----------------------------------------------------------GTTTTATTATTTATGCACAAGCTGCTTTCTTAGCCT-AATCTTATCCTTTTTATATAAA-----------ATCTTTTACAAGAATAGAA--TTTTTG---TAAAGAATCAAAAAGTGCTCCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111584993 136 - 190429646 TCTGACCATGACTC---------------------------------AATATAGAAATGAAAT----------------------------------------------------------ATTTTATTATTTATATACAAACTGCTTTATTAGCCTAAATCTTGTCCTTTTTATGTAAA-----------ATCTTTTACAAGAATAGAA--TTTTTG---TAAAGAATCAAAAAGAGCTCCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110754174 136 - 189454096 TCTGACCATGACTC---------------------------------AATATAGAAATGAAAT----------------------------------------------------------GTTTTATTATTTATATACAAACTGCTTTATTAGCCTAAATCTTGTCCTTTTTATGTAAA-----------ATCTTTTACAAGAATAGAA--TTTTTG---TAAAGAATCAAAAAGAGCTCCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13320602 136 + 26754465 TCTGACCATGACTC---------------------------------AATATAGAAATGAAAT----------------------------------------------------------GTTTTATTATTTATATACAAACTGCTTTATTAGCCTAAATCTTGTCCTTTTTATGTAAA-----------ATCTTTTACAAGAATAGAA--TTTTTG---TAAAGAATCAAAAAGAGCTCCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4222070 136 - 5137665 TCTGACCATGACTC---------------------------------AATATAGAAATGAAAG----------------------------------------------------------GTTTTATTATTTATATACAAACTGCTTTATTAGCCTAAATCTTGTCCTTTTTATGTAAA-----------ATCTTTTACAAGAATAGAA--TTTTTG---GAAAGAATCAAAAAGAGCTCCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122931487 136 - 135778131 TCTGACCATGACTC---------------------------------AATATAGAAATGAAAT----------------------------------------------------------GTTTTATTATTTATATACAAACTGCTTTATTAGCCTAAATCTTGTCCTTTTTATGTAAA-----------ATCTTTTACAAGAATAGAA--TTTTTG---TAAAGAATCAAAAAGAGCTCCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2043972 136 + 2427316 TCTGACCATGACTC---------------------------------AATATAGAAATGAAAG----------------------------------------------------------GTTTTATTATTTATATACAAACTGCTTTATTAGCCTAAATCTTGTCCTTTTTATGTAAA-----------ATCTTTTACAAGAATAGAA--TTTTTG---GAAAGAATCAAAAAGAGCTCCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1339392 136 + 1448899 TCTGACCATGACTC---------------------------------AGTATAGAAATGAAAT----------------------------------------------------------GTTTTATTATTTATATACAAACTGCTTAATTAGCCTAAATCTTGTCCTTTTTATGTAAA-----------ATCTTTTACAAGAATAGAA--TTTTTG---TAAAGAATCAAAAAGAGCTCCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53046763 135 - 190850796 TCTGACCATGACTC---------------------------------AATATAGAAATGAAAT----------------------------------------------------------GTTTTATTATTTATACACAAGCTGCTTTCTTAGCCTAAATCTTATCatttt---ataaa-----------atcttttataagaatataatttttttG---TAAAGAATCAAAAAGAGCTCCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8211602 133 - 15139346 TCTGACCATGACTC---------------------------------AATATAGAAATGAAAT----------------------------------------------------------GTTTTATTATTTAACCACAAGCTGCTTT-TTAGCCTAAATCTTATGGtttt---ataaa-----------atattttataagaatataa-ttttttG---TAAAGAATCAAAAAGAGCTCCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6998418 134 - 7304997 TCTGACCATGACTC---------------------------------AATATAGAAATGAAAT----------------------------------------------------------GTTTTATTATTTATACACAAGCTGCTTTCTTAGCCTAAATCTTATCATTTT---ATAAA-----------ATCTTTTACAAGAATATAA-TTTTTTG---TAAAGAATCAAAAAGAGCTCCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9416170 134 - 11631747 TCCGACCATAACTC---------------------------------AATATAGAAATGAAAT----------------------------------------------------------GTTTTATTATTTATACACAAGCTGCTCTCTTAGCCTAAATCTTATCGTTTT---ATAAA-----------ATCTTTTGCAAGAATATAA-TTTTTTG---TAAAGAATCAAAAAGAGTTCTT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8641921 137 + 8790067 TCTGGCCTTGACTA---------------------------------AACATAGAAATGAAAT-------------------------------------------------------TAAGTTTTATTACTC-TACACAAGCTGCTTTCTTAGCCTAAATTTTATCCCTTTTATATAAA-----------ATCTTTT-CAAGCCCAGAA--TTTCTT---TAAAAAATCAAAAAGAGCTCCT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76444599 142 + 151834684 TCTGGGCTTGGCTC---------------------------------AA-----AAAACAAAT----------------------------------------------------------CAGTTAAAGCTTAAAGACAAGCTACTTTCTTAGCCTAAAATTTATCCAGGATAAACAAACAAACAAAAACCTCTCTTGGAAATGTAGAA--TTTCTC---TAAAGAATCAAAAAGAGATCCT i mm10.chr5 C 0 I 469 s canFam3.chr13 48028606 225 + 63241923 tctgcccatgtctctgcctctctgcctctctctgtgtgtctctcatgaataaataaataaaatcttaaaaaaaaaAAATCTTCAGATCCAATCTGCCCTCAACAACAAAAAAATGAAGCAAGTTTTATTACT-ACACACAAACTGCTCTCTTATCCTAAGTCCTATCCCTTT-GCATAAA-----------AATTTTTGCAAGCACTGGG--TTTCTT---TAAAAAACCAAAAGGAGCTCCT i canFam3.chr13 I 109 C 0 s dasNov3.JH568349 4123360 137 - 5279953 TCTGGCTTCAACTA---------------------------------AATACAGAGATGAAGC--------------------------------------------------------AAGTTTTATTAC----ACACAAATGGCTTTCTTAGTCTAAATCTTATTCCTTTTGTAAAAA-----------ACCTTTTGCAAGAGTAGAA--TTGCAAAATTAAAAAATAAAACATGGTTCAG i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I a score=3332961.000000 s hg38.chr4_KI270787v1_alt 92390 277 + 111943 TGAATCAATCACTATTTGGG-TATAATTATTTTATTTGTGAATATCACCCTACCTCCAAGGCTACATGGTTTACAACTCATTCATTTAGCTGGTCGATCTTTCATATAACAATAATTTGTGACTCTTATTGTATGTTCTATATGTTGACAAACTACATATTAGGTTATATATTGGTTCTACACTACCAAGTAAAAATGTG-CTTTTATTCT--AAGTATTTCAATTAGTGAGACATTTGATACTT-AAGGA---CAATACTATAGCATGTTATGTTAATTATTTT s panTro5.chr4 119659660 277 - 194502333 TGAATCAATCACTATTTGGG-TATAATTATTTTATTTGTGAATATCACCCTACCTCCAAGGCTACATGGTTTACAACTCATTCATTTAGCTGGTCGATCTTTCATATAGCAATAATTTGTGACTCTTATTGTATGTTCTATATGTTGACAAACTACATATTAGGTTATATGTTGGTTCTACACTACCAAGTAAAAATGTG-CTTTTATTCT--AAGTATTTCAATTAGTGAGACATTTGATACTT-AAGGA---CAATACTATAGCATGTTATGTTAATTATTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121073482 277 - 195804263 TGAATCAATCACTATTTGGG-TATAATTATTTTATTTGTGAATATCACCCTACCTCCAAGGCTACATGGTTTACAACTCATTCATTTAGCTGGTCGATCTTTCATATAACAATAATTTGTGACTCTTATTGTATGTTCTATATGTTGACAAACTACATATTAGGTTATATGTTGGTTCTACACTACCAAGTAAAAATGTG-CTTTTATTCT--AAGTATTTCAATTAGTGAGACATTTGATACTT-AAGGA---CAATACTATAGCATGTTATGTTAATTATTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4502490 277 - 17550833 TGAATCAATCACTATTTGGG-TATATTTATTTTATTTGTGAATATCACCCTACCTCCAAGACTACATGGTTTACAACTCATTCATTTAGCTGGTCGATCTTTCATACAACAATAATTTGTGACTCTTATTGTATGTTCTATATGTTGACAAACTACATATTAGGTTATATGTTGGCTCTACACTACCAAGTAAAAATGTG-CTTTTATTCT--AAGTATTTCAATTAGTGAGACATTTGATACTT-AAGGA---CAATACTATAGCATGTTATGTTAATTATTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69371842 278 - 118206036 TGAATCAATAACTATTTGGG-TATAATTATTTTATTTGTGAATACCACCCTACCTCCAAGTTTACGTGGTTTACAACTCATTCATTTAGCTGGTCAATCTTTCATATAACAATAATTCGTGACTCTTATTATGTGTCCTATATGTTGACAAACTACATATTAGGTTATATGTTGACTCTACCCTAGTAAGTAAAAATGTG-CTTTTATTCT--AAGTATTTCAATTACCGAGACATTTGATACGTAAAGGA---CAATACTATAGCACATTATGTTAATTATTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111585129 277 - 190429646 TGAATCAATAACTATTCCGG-TATAATTATTTTATTTGTGAATGCCACCCTACCTCCAAGGCTACATGGTTTACAACTCATTCATTTAGCTGGTCAATCTTTCATATAATAATAATTTGTGACTCTTATTGTATGTCCTATATGTTGGCAAACTACATATTAGGTTATATGTTGGCTCTACACTACTAAGTAAAAATGTG-CTTTTATTCT--AAGTATTTCAATTACTGAGACGTTTGATACTT-AAGGA---CAATACTATAGCACATTATGTTAATTATTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110754310 277 - 189454096 TGAATCAATAACTATTCCGG-TATAATTATTTTATTTGTGAATGCCACCCTACCTCCAAGGCTACATGGTTTACAACTCATTCATTTAGCTGGTCAATCTTTCATATAATAATAATTTGTGACTCTTATTGTATGTCCTATATGTTGGCAAACTACATATTAGGTTATATGTTGGCTCTACACTACTAAGTAAAAATGTG-CTTTTATTCT--AAGTATTTCAATTACTGAGACGTTTGATACTT-AAGGA---CAATACTATAGCACATTATGTTAATTATTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13320738 277 + 26754465 TGAATCAATAACTATTCTGG-TATAATTATTTTATTTGTGAATGCCACCCTACCTCCAAGGCTACATGGTTTACAACTCATTCATTTAGCTGGTCAATCTTTCATATAATAATAATTTGTGACTCTTATTGTATGTCCTATATGTTGACAAACTACATATTAGGTTATATGTTGGCTCTACACTACTAAGTAAAAATGTG-CTTTTATTCT--AAGTATTTCAATTACTGAGACGTTTGATACTT-AAGGA---CAATACTATAGCACATTATGTTAATTATTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4222206 277 - 5137665 TGAATCAATAACTATTTGGG-TATAATTATTTTATTTGTGAATGCCACCCTACCTCCAAAGCTACATGGTTTACAACTCATTCATTTAGCTGGTCAATCTTTCATATAATAATAATTTGTGACTCTTATTGTATGCCCTATATGTTGACAAACTACATATTAGGTTATATGTTGGCTCTACACTACTAAGTAAAAATGTG-CTTTTATTCT--AAGTATTTCAATTACTGAGACGTTTGATACTT-AAGGA---CAATACTATAGCACATTATCTTAATTATTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122931623 274 - 135778131 TGAATCAATAACTATTTGGG-TATAATGATTTTATTTGTGAATGCCACCCTACCTCCAAGGCTACATGGTTTACAAGTCATTCATTTAGCTGGTCAATCTTTCAT---ATAATAACTTGTGACTCTTATTGTATGTCCTATATGTTGACAAACTACATATTAGATTATATATTGGCTCTACATTACTAAGTAAAAATGTG-CTTTTATTCT--AAGTATTTCAATTACTGAGACATTTGATACTT-AAGGA---CAATACTATAGCACATTATGTTAATTATTTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2044108 277 + 2427316 TGAATCAATAACTATTTGGG-TATAATTATTTTATTTGTGAATGCCACCCTACCTCCAAGGCTACATGGTTTACAACTCATTCATTTAGCTGGTCAATCTTTCATATAATAATAATTTGTGACTCTTATTGTATGTCCTATATGTTGACAAACTACATACTAGGTTATATGTTGGCTCTACACTACTAAGTAAAAATGTG-CTTTTATTCT--AAGTATTTCAATTACTGAGACATTTGATACTT-AAGGA---CAATACTATAGCACATTATGTTAATTATTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1339528 277 + 1448899 TGAATCAATAACTATTAGGG-TATAATTATTTTATTTGTGAATGCCACCCTACCTCCAAGGCTACATGGTTTACAACTCATTCATTTAGCTGGTCAATCTTTCATATAATAATAATTTGTGACTCTTATTGTATGTCCTATATGTTGACAAACTACATATTAGGTTATATGTTGGCTCTACACTACTAAGTAAAAATGTG-CTTTTATTCT--AAGTATTTCAATTACTGAGGCATTTGATACTT-AAGGA---CAATACTATAGCACATGCTGTTAATTATTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53046898 279 - 190850796 TGAATCAATAACTATTTGGGGTATGTTTATTTTACTTGTTAATACCACCCTACATTCAAGGCTACATGGTTTATAACTCATTCATTTAGCTGGTCAATCTTTCATATAACAATGATTTGTAAATCTTATTTTGTGTCCTATATGTTGACAAACTACATATTAGGTTATTTGTTGGCTCTACACTACTAGGTAAAAATGTGGGTTTTTTTCT--AAGTATTTTAATTACTGAGACATTCGATACTT-GAGGA---CAACACTATAGCACATTACtttttttttttt i calJac3.chr3 C 0 I 290 s saiBol1.JH378162 8211735 279 - 15139346 TGAATCAATAACTATTTGGGGTATGCTTATTTTACTTGTTAATACCACCCTACCTTCAAGGCTACATGGTTTATAACTCATTCATTTAGCTGGTCAATCTTTCATATAACAATAATTTGTAAATCTTATTTTGTGTCCTATATGTCGACAAACTACATATTAGGTTATATGTTGACTCCACACTACTAGGCAAAAATGTGTTTTTTTTCCT--AAGTATTTCAATTACTGAGACATTCGATACTT-GAGGA---CAACACTATAGCACATCATGTCAATTATTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6998552 278 - 7304997 TCAATCAATAACTATTTGGGGTATGCTTATTTTACTTGTTAATACCACCCTACCTTCAAGGCTACACGGTTTATAACTCATTCATTTAGCTGGTCAATCTTTCATATAACAATAATTTGTAAATCTTATTTTGTGTGCTGTATGTTGACAAACTACATGTTAGGTTATATGTTGGCTCTACACTGCTAGGTAAAAACGTG-TTTTTTTCCT--AAGTATTTCAATTACTGAGACATTCGATACTT-GAGGA---CAACACTATAGCACATTATGTTAATTATTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9416304 278 - 11631747 TGAATCAATAACTATTTGGGATATGCTTATTTTACTTGTTAATACCACCCTATCTTCAAGGCTACACGGTTTATAACCCATTCATTTAGCTGGTCAATCTTTCATATAACAATAATTTGTAAATCTTATTTTGTGTCCTATATGTCGACAAACTACATATTAGGTTATATGTTGGCTCTACACTACTAGGTAAAAATGTA-GTTTTTTTCT--AAGTATTTCAATTATTGAGACATTCAATACTT-TAGGA---CAACACCGTAGCACATTACGTTAATTATTTT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8642058 269 + 8790067 CGAATCAATAACTGTTTTGG-TA-ACTTACTTTATTTGCCAATACCTCCCTACCTTCAAAGCTACGTGGTTTATAACTCATTCATTTAGCTTGTCA----TTCCTATAA-AGCCATTTATGAATGTTATTGAATGTCTTATATCTTGACAAACTATATATTAAATTGTTTGTTGGCTATACACTACTAAGGAAAAA-ATG--TTTTTTTTT--AAGCATTTCAATTTCTAAAATATGTGATACTT-GAGGC---CATTACTATAGAACATCATGCTAATTATTTT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48028831 267 + 63241923 TTAATCAGTAACTGTTTTGG-CA----CATTTTACTTTTTAATACTACTCAGCCTCTAAAGTGACATGGTTTGTAACTCACTCATTTAGCCGGTCAATCATTCATATAACAACCACTTAGGAATC---TTGTGTATCCTATAT-TAGACAAAATATACATTAGGCTATATGTTGGCTCTTCCTTG---AGGAAAAATATG-GTTT--GTCT--AAGGACTTCAATTACTGAAATACTTCATACGG-AAGTATTTCAATACTATAGTGTACTATGTAAATTACTTT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4123497 259 - 5279953 TGAATTAATAACTGCTTTGG-TATACATTTTAGATTTTATAATACCACCTTATCTCCAAAACTACATGGTCTTTAATTCATTTATTTAGTTGTTTGATCCTTCATATAACAATCATTTATGAATCTTCTTATGTGTCTTGTAT---------------ATTAGGCTATATGTTAGCTCTACACTACTAAG-GAAAATGTG-GTTTTTTTCCCAAAGCATTTCAGTTATTGAAATGTTTAATATTT-GAGGT---CAATACTATAGCACAGTATATGATTTC---- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76444741 469 + 151834684 I a score=122895.000000 s hg38.chr4_KI270787v1_alt 92667 16 + 111943 TATGCAATATCATACA------- s panTro5.chr4 119659937 16 - 194502333 TATGCAATATCATACA------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121073759 16 - 195804263 TATGCAATATCATACA------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4502767 16 - 17550833 AATGCAATATCATACA------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69372120 16 - 118206036 AATGCAATATCATACA------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111585406 16 - 190429646 AATGTAATATCATACA------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110754587 16 - 189454096 AATGTAATATCATACA------- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13321015 16 + 26754465 AATGCAATATCATACA------- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4222483 16 - 5137665 AATGCAATATCATACA------- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122931897 16 - 135778131 AATGCAATATCATACA------- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2044385 16 + 2427316 AATGCAATATCATACA------- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1339805 16 + 1448899 AATGCAATATCATACA------- i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8212014 13 - 15139346 CATGAAAT---ATACA------- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6998830 13 - 7304997 CATGAAAT---ATAAA------- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9416582 13 - 11631747 CATGAAAT---ATACA------- i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8642327 16 + 8790067 AATACAGTGACATGGA------- i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48029098 16 + 63241923 AATGCAATGACACata------- i canFam3.chr13 C 0 I 101 s dasNov3.JH568349 4123756 23 - 5279953 AATGCAATAACatatatacttaa i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76444741 469 + 151834684 I e calJac3.chr3 53047177 290 - 190850796 I a score=54842.000000 s hg38.chr4_KI270787v1_alt 92683 4 + 111943 GATT s panTro5.chr4 119659953 4 - 194502333 GATT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121073775 4 - 195804263 GATT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4502783 4 - 17550833 GATT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69372136 4 - 118206036 GATT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111585422 4 - 190429646 GATT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110754603 4 - 189454096 GATT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13321031 4 + 26754465 GATT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4222499 4 - 5137665 GATT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122931913 4 - 135778131 GATT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2044401 4 + 2427316 GATT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1339821 4 + 1448899 GATT i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8212027 4 - 15139346 GATT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6998843 4 - 7304997 GATT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9416595 4 - 11631747 GATT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8642343 4 + 8790067 GATT i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48029215 4 + 63241923 gatt i canFam3.chr13 I 101 I 117 s dasNov3.JH568349 4123779 4 - 5279953 aatt i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76444741 469 + 151834684 I e calJac3.chr3 53047177 290 - 190850796 I a score=125709.000000 s hg38.chr4_KI270787v1_alt 92687 13 + 111943 ACATAA-----TTTA---------ATG s panTro5.chr4 119659957 13 - 194502333 ACATAA-----TTTA---------ATG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121073779 13 - 195804263 ACATAA-----TTTA---------ATG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4502787 13 - 17550833 ACATAA-----TTTA---------ATG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69372140 13 - 118206036 ACACAA-----TTTA---------ATG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111585426 13 - 190429646 ACATAA-----TTTA---------ATG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110754607 13 - 189454096 ACATAA-----TTTA---------ATG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13321035 13 + 26754465 ACATAA-----TTTA---------ATG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4222503 13 - 5137665 ACATAA-----TTTA---------ACG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122931917 13 - 135778131 ACATAA-----TTTA---------ATG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2044405 13 + 2427316 ACATAA-----TTTA---------ATG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1339825 13 + 1448899 ACATAA-----TTTA---------ATG i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8212031 13 - 15139346 ACATAA-----TTTA---------ATG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6998847 13 - 7304997 ACATAA-----TTTA---------ATG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9416599 13 - 11631747 ACATAA-----TTTA---------ATG i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8642347 27 + 8790067 ACATACATAATTTTAAAATAAAATATG i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48029336 13 + 63241923 ATATAA-----ATAA---------ATA i canFam3.chr13 I 117 C 0 s dasNov3.JH568349 4123783 13 - 5279953 ttttaa-----ttaa---------aaa i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76444741 469 + 151834684 I e calJac3.chr3 53047177 290 - 190850796 I a score=413899.000000 s hg38.chr4_KI270787v1_alt 92700 34 + 111943 ATGATGAGAGACTGAGAAATTGAGAGACTATTTA s panTro5.chr4 119659970 34 - 194502333 ATGATGAGCGACTGAGAAATTGAGAGACTATTTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121073792 34 - 195804263 ATGATGAGAGACTGAGAAATTGAGAGACTATTTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4502800 34 - 17550833 ATGATGAGAGACTGAGAAATTGAGAGAATATTTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69372153 34 - 118206036 ATGATGAGAGACTGAGAAATTGAGAGAATATTTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111585439 34 - 190429646 ATGATGAGAGACTGAGAAATTGAGATAATATTTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110754620 34 - 189454096 ATGATGAGAGACTGAGAAATTGAGATAATATTTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13321048 34 + 26754465 ATGATGAGAGACTGAGAAATTGAGATAATATTTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4222516 34 - 5137665 ATGATGAGAGACTGAGAAATTGAGACAATATTTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122931930 34 - 135778131 ATGATGAGAGACTGAGAGATTGAGATAATATTTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2044418 34 + 2427316 ATGATGAGAGACTGAGAAATTGAGACAATATTTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1339838 34 + 1448899 ATGATGAGAGACTGAGAAATTGAGATAATATTTA i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8212044 33 - 15139346 ATGATGAGAGACTGAGA-ATTGAGACAATATTTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6998860 33 - 7304997 ATGATGAGAGACTGAGA-ATTGAGACAATATTTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9416612 33 - 11631747 ATGATGAGAGACTAAGA-ATTGAGACAATATTTA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8642374 34 + 8790067 ACAGTGAGAGACTGAGAAATTAAGACTTTACTTA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76445210 34 + 151834684 AAGATAAGAGACTGAGAAAATGAGACAATGTTTC i mm10.chr5 I 469 C 0 s canFam3.chr13 48029349 34 + 63241923 ATACTGGGAGACGGAGAAACTCAGACAATATTTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4123796 34 - 5279953 aaGATGGGAAATTGAGAAATTAAAATAATATTTA i dasNov3.JH568349 C 0 M 1186 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e calJac3.chr3 53047177 290 - 190850796 I a score=198387.000000 s hg38.chr4_KI270787v1_alt 92734 19 + 111943 CCCCTATGAAGTCACCTTC s panTro5.chr4 119660004 19 - 194502333 CCCCTATGAAGTCACCTTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121073826 19 - 195804263 CCCCTATGAAGTCACCTTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4502834 19 - 17550833 CCCCTATGAAGTCACCTTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69372187 19 - 118206036 CCCCTATGAAGTCACCTTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111585473 18 - 190429646 TCCCTATGAAGTCACC-TC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110754654 18 - 189454096 TCCCTATGAAGTCACC-TC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13321082 18 + 26754465 TCCCTATGAAGTCACC-TC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4222550 18 - 5137665 TCCCTATGAAGTCACC-TC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122931964 18 - 135778131 TCCCTATGAAGTCACC-TC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2044452 18 + 2427316 TCCCTATGAAGTCACC-TC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1339872 18 + 1448899 TCCCTATGAAGTCACC-TC i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8212077 19 - 15139346 CCCCTATGAAGTCACCTTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6998893 19 - 7304997 CCCCTATGAAGTCACCTTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9416645 19 - 11631747 CCCCTATGAAGTCACCTTC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8642408 19 + 8790067 CCCCCAAGAGGTCACTTTC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76445244 19 + 151834684 CCCCTGTAAAGCCACCTTc i mm10.chr5 C 0 I 500 s canFam3.chr13 48029383 18 + 63241923 -CTTTATAATGTCACCTTC i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e dasNov3.JH568349 4123830 1186 - 5279953 M e calJac3.chr3 53047177 290 - 190850796 I a score=241226.000000 s hg38.chr4_KI270787v1_alt 92753 21 + 111943 TTCAAACTCACTTAAAATGTC s panTro5.chr4 119660023 21 - 194502333 TTCAAACTCACTTAAAATGTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121073845 21 - 195804263 TTCAAACTCACTTAAAATGTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4502853 21 - 17550833 TTCAAACTCACTTAAAATGTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69372206 21 - 118206036 TTCGAACTCACTTAAAATGTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111585491 21 - 190429646 TTCAAACTCACTTAAAATGTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110754672 21 - 189454096 TTCAAACTCACTTAAAATGTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13321100 21 + 26754465 TTCAAACTCACTTAAAATGTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4222568 21 - 5137665 TTCAAACTCACTTAAAATGTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122931982 21 - 135778131 TTCAAACTCACTTAAAATGTC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2044470 21 + 2427316 TTCAAACTCACTTAAAATGTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1339890 21 + 1448899 TTCACACTCACTTAAAATGTC i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8212096 21 - 15139346 TTCAAACTCACTTAAAATCTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6998912 21 - 7304997 TTCAAACTCACTTAAAATCTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9416664 21 - 11631747 TTCAAACTCACTGAGAATCTC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8642427 21 + 8790067 TTCAAACTCACTTAAAATGTC i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48029401 21 + 63241923 TTCAAAGTCACTTAAAATTTC i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76445263 500 + 151834684 I e dasNov3.JH568349 4123830 1186 - 5279953 M e calJac3.chr3 53047177 290 - 190850796 I a score=3506914.000000 s hg38.chr4_KI270787v1_alt 92774 328 + 111943 AGAGTTTGAAT-TTTTGTTTGTGCTTGTATTGCTTGAGATGACCTTTAAATGTCCAGCAAGAATCCAATAGCACTCAAGTGGTAGGTGTCCTTGTCTTAGAACCAGACTTTCAGCTTCATACCTGGAGAGAAAGAATATC----AAAAACATTTAGCATGC---AAAATGGTTAGGATGAAGTCATTGGTGACAAACAAGACAAAACACAAAACCCTTTCATCTTCATC---TGTAAAGAAATTTACGTTTTGTTAAGAAGCAAATATTGTCTTCCTCTGGTACAGAccttgaaggcagggatttcagcca--ccttatccactactgtagcacc-gtgcct s panTro5.chr4 119660044 328 - 194502333 AGAGTTTGAAT-TTTTGTTTGTGCTTGTATTGCTTGAGATGACCTTTAAATGTCCAGCAAGAATCCAATAGCACTCAAGTGGTAGGTGTCCTTGTCTTAGAACCAGACTTTCAGCTTCATACCTGGAGAGAAAGAATATC----AAAAACATCTAGCATGC---AAAATGGTTAGGATGAAGTCATTGGTGACAAACAAGACAAAACACAAAACCCTTTCATCTTCATC---TGTAAAGAAATTTACGTTTTGTTAAGAAGCAAGTATTGTCTTCCTCTGGTACAGACCTGgaaggcagggatttcagcca--ccttatccactactgtagcacc-gtgcct i panTro5.chr4 C 0 C 0 s panPan2.chr4 121073866 328 - 195804263 AGAGTTTGAAT-TTTTGTTTGTGCTTGTATTGCTTGAGATGACCTTTAAATGTCCAGCAAGAATCCAATAGCACTCAAGTGGTAGGTGTCCTTGTCTTAGAACCAGACTTTCAGCTTCATACCTGGAGAGAAAGAATATC----AAAAACATCTAGCATGC---AAAATGGTTAGGATGAAGTCATTGGTGACAAACAAGACAAAACACAAAACCCTTTCATCTTCATC---TGTAAAGAAATTTACGTTTTGTTAAGAAGCAAGTATTGTCTTCCTCTGGTACAGACCTGgaaggcagggatttcagcca--ccttatccactactgtagcacc-gtgcct i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4502874 328 - 17550833 AGAGTTGGAAT-TTTTGTTTGTGCTTGTATTGCTTAAGATGACCTTTAAATGTCCAGCAAGAATCCGACAGCACTCAAGTGATAGGTATCCTTGTCTTAGAACCACACTTTCAGCTTCATACCTGGAGAGAAAGAATATC----AAAAACATTTAGCATGC---AAAATGGTTAGGATGAAGTCATTGGTGACAAACAAGACAAAACACAAAACCCTTTCATCTTCATC---TGTAAAGAAATTTACGTTTTGTTAAGAAGCAAGTATTGTCCTCCTCTGGTACAGAccttgaaggcagggatttcagcca--ccttatccactactgtagcacc-gtgcct i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69372227 328 - 118206036 AGAGTTGGCAT-TTTTGTTTGTGCTTGCATTGCTTGAGATCACCTTTAAATGTCCAGCAAGAATCCAGTAGCACTCAAATGGTAGGTGTCCTTGTCTTAGAACCACACTTTCAGCTTCACACCTGGAGAGAAAGAATATC----AAAAACATTTAGCATGC---AAAATGGTTAGGATGAAGTCATTGGTGACAGACAAAACAAAACACAAAACCCTTTCATCTCCATC---TGTAAAGAAATTTACGTTTTGTTAAGAAGCAAATATTGTCCTCTTCTGGTACAGAccttgaaggcagggatttcagcca--ccttatccactactgtagcacc-gtacct i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111585512 323 - 190429646 AGAGTTGGAAT-TTTTGTTTGTGCTTGTATTGCTTGAGATGACCTTTAAACATCCAGCAAGAATCCAGTAGCACTCAAGTGGTTTGTGTCCTTGTCTTAGAACCAGACTTTCAGCTTCATACCTGGAGAGAAAGAATATC----AAAAACATTTAGCATGC---GAAATGGCTAAGATGAAGTCACTGGTGACAA-----ACAAAACACAAAACCCTTTCATCTTCATC---TGTAAAGAAATTTACATTTTGTTAAGAAGCAAGTATCGTCCTCTTCTGGTACAGAccttgaaggcagggatttcagcta--ccttatccactactgcagcacc-gtacct i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110754693 323 - 189454096 AGAGTTGGAAT-TTTTGTTTGTGCTTGTATTGCTTGAGATGACCTTTAAACGTCCAGCAAGAATCCAGTAGCACTCAAGTGGTTTGTGTCCTTGTCTTAGAACCAGACTTTCAGCTTCATACCTGGAGAGAAAGAATATC----AAAAACATTTAGCATGC---GAAATGGCTAAGATGAAGTCATTGGTGACAA-----ACAAAACACAAAACCCTTTCATCTTCATC---TGTAAAGAAATTTACATTTTGTTAAGAAGCAAGTATCGTCCTCTTCTGGTACAGAccttgaaggcagggatttcagcta--ccttatccactactgcagcacc-gtacct i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13321121 323 + 26754465 AGAGTTGGAAT-TTTTGTTTGTGCTTGTATTGCTTGAGATGACCTTTAAACGTCCAGCAAGAATCCAGTAGCACTCGAGTGGTTTGTGTCCTTGTCTTAGAACCAGACTTTCAGCTTCATACCTGGAGAGAAAGAATATC----AAAAACATTTAGCATGC---GAAATGGCTAAGATGAAGTCATTGGTGACAA-----ACAAAACACAAAACCCTCTCATCTTCATC---TGTAAAGAAATTTACATTTTGTTAAGAAGCAAGTATCGTCCTCTTCTGGTACAGAccttgaaggcagggatttcagcta--ccttatccactactgcagcacc-gtacct i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4222589 323 - 5137665 AGAGTTGGAAT-CTTTGTTTGTGCTTGTATTGCTTGAGATGACCTTTAAACGTCCAGCAAGAATCCAGTAGCACTCAAGTGGCATGTGTCCTTGTTTTAGAACCAGACTTTCAGCTTCATACCTGGAGAGAAAGAATATC----AAAAACATTTAGCATGC---GAAATGGCTAAGATGAAGTCATTGGTGACAA-----ACAAAACACAAAACCCTTTCATCTTCATC---TGTAAAGAAATTTACATTTTGTTAAGAAGCAAGTTTCATCCTCTTCTGGTACAGAccttgaaggcagggatttcagcta--ccttatccactactgcagcacc-gtacct i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122932003 323 - 135778131 AGAGTTGGAAT-TTTTGTTTGTGCTTGTATTGCTTGAGATGACCTTTAAACGTCCAGCAAGAATCCAGTAGCACTCAAGTGGTATGTGTCCTTGTTTTAGAACCAGACTTTCAGCTTCATACCTGGAGAGAAAGAATATC----AAAAACATTTAGCATGC---GAAATGGCTAAGATGAAGTCATTGGTGACAA-----ACAAAACACAAAACCCTTTCATCTTCATA---TGTAAAGAAATTTACATTTTGTTAAGAAGCAAGTATCATCCTCTTCTGGTATAGAccttgaaggcagggatttcagcta--ccttatccactactgcagcacc-gtacct i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2044491 323 + 2427316 AGAGTTGGAAT-TTTTGTTTGTGCTTGTATTGCTTGAGATGACCTTTAAACGTCCAGCAAGAATCCAGTAGCACTCAAGTGGTATATGTCCTTGTTTTAGAACCAGACTTTCAGCTTCATACCTGGAGAGGAAGAATATC----AAAAACATTTAGCATGC---GAAATGGCTAAGATGAAGTCATTGGTGACAA-----ACAAAACACAAAACCCTTTCATCTTCATC---TGTAAAGAAATTTACATTTTGTTAAGAAGCAAGTTTCATCCTCTTCTGGTACAGAccttgaaggcagggatttcagcta--ccttatccactactgcagcacc-gtacct i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1339911 322 + 1448899 AGAGTTGGAAT-TTTTGTTTGTGCTTGTATTGCTTGAGATGACCTTCAAGCGTCCAGCAAGAATCCAGTAGCACTCAAGTGGTATGTGTCCTTGTCTTAGAACCAGACTTTCAGCTTCATACCTGGAGAGACAGAATATC----AAAAACATTTAGCATGC---GAAATGGCTAGGATGAAGTCATTGGTGACAA-----ACAAAACACAAAACCCTTTCATCTTCATC---TGTAAAGAAATTT-TATTTTGTTAAGAAGCAAGTATCGTCCTCTTCTGGTACAGAccttgaaggcagggatttcagcta--ccttatccactactgtagcacc-gtacct i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8212117 328 - 15139346 CAAGTTGGAAT-TTTTGTTTGTGCTTGTACTGCTTGTGATGACCTTTAAACGTCCAGCAAGAATCCAGTAACACTCAAGTGGTATGTGTCCTTGTCTTAGAATCAGACTTTCACTTTCATACCTGGAGAGAAAGAACATC----AGAAACATTTATCTTGC---AAAATGGTTAGGATAAAATCATTGGTGACAAACAAAAGAAAACACAAAACCCTGTCATCTTCATC---TGTAAAGAAATTTACTCTTTGTTAAGAAGCAAGtattgtcctcttctaatatagaccttgagggcagggattccagcca--ctttatccactactgtagcatc-atacct i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6998933 328 - 7304997 AGAGTTGGAAT-TTTTGTTTGTGCTTGTATTGCTTGTGATGACCTTTAAACGTCCAGCAAGAATTTAGTGGCACTCAAGTGGTATGTGCCCTTGTCTTAGAATCAGACTTTCACCTTCATACCTGGAGAGAAAGAACATC----AGAAACATTTATCTTGC---AAAATGGTTAGGATAAAGTCATTGGTGACAAACAAAAGAAAACACAAAACCCTGTCATCTTCATC---TGTAAAGAAATTTACTCTTTGTTAAGAAGCAAGTATTGTCCTCTTCTAGTACAGAccttgagggcagggattccagcca--ccttatccactactgtagcatc-atacct i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9416685 327 - 11631747 AGAGTTGGAAT-TTTTGTTTGTGCTTGTATTGCTTGTGATGACCACTAAACGT-CAGCAAGAATCCAGTAGCACTCAAGTGGTATGTGTCCTTGTCTTAGAATCAGACTTTTACCTTCATACCTGGAGAGAAAGAACATC----AGAAACATTTATCTTGC---AAAATGGTTAGGATAAAGTCATTGGTAACAAACAAAAGAAAACACAAAACCCTGTCATCTTCATC---TGTAAAGAAATTTACTCTTTGTGAAGAAGCAAGTATTGTCCTCTTCTAGTACAGAccttgagggcagggattccagcca--ccttgtccactactgtagcatc-atacct i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8642448 304 + 8790067 AGA-TTGGAATGTTTTTTTCAGGCTTTTGTTACTTGATATGACCTTTAAATGCCCAGCAAGAATCAAGTAGCATTCAAATCATTCTTGTCCTTGTCTTATAACCAGACTCTCAGCTTCATACCTGGAGAGAAAGAATATC----AAAAACATCTCTCTTGT---AAAATGGCTAGTTTGAAGTCA--AGTG-------------------AAACCCTGTCACCTTCATC---CTTAAAGAAGCTGACTTTTCATTAAGAAGCAATTATCCTC----TCTGGCGCAGAGCCtgaaggcagagatttcagcta--ccttatcaactgctacagcatcagtgcct i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76445763 321 + 151834684 AGATTTGAAAT-TTTTGTTCATGCTCGTATTACCACATATGATCTTTAAATGACCTTCAAGGACCAAGTAGCATTCAAGTGGAATATGCCCTTGTCTTAGAGCCAAGCTTTCAACTTCTAACCTGGAGATAAGAAAT-TC----AAAAGCATTCCTGTTGAAAGAAAGAGACTAGTA-AAAGTCACTGGTGATGG-----ATGAAA-ACGGAAACCTGTCTTTTTTTTTTTATGTAAACAAATTCA-ATTTTGCTGAGAAGCAGTTAACAGTGTTCT---GTGCAGATCCCATGAGCAGGG----CAGCAAACACTGATTCAGTGCTGGAGTATCAGGGTGT i mm10.chr5 I 500 C 0 s canFam3.chr13 48029422 320 + 63241923 AGAGTTGGTAT-TTTTGTTCCTGCTTGTATTACTTGACATGACCTTTAAGTGTCCAGCAAAAATCAAGCAGCATTCCTTTGGTACATGTCCTTATCTTAGAACCATACTTTCAACTTCAAATCTGGAAAGAAAAAATATTTTAAAAACATATTTCTTCTGC---AAAATGGCAAGTTTGGAGTCACTGATCGCAA------------ACAAAATCCTTTTATCTTCCTC---CATAAAGAATCTTACTTTTTGTTAAGAAGCAGTtatcatcctcttctaatacagaccttataggcagggattctagcca--acttgtacact-ctgtaacatcagtgcct i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e dasNov3.JH568349 4123830 1186 - 5279953 M e calJac3.chr3 53047177 290 - 190850796 I a score=1538746.000000 s hg38.chr4_KI270787v1_alt 93102 144 + 111943 agaatggtgcttggcccagaaagcagggactccatctacataaattgagtgcatTTATGTATAGGCAAAAGGAGGTGCTGTAAAACCACAGAATAGAAGGTCTC----CA----CACACATTTCTTAGATGAGTCCTGCAATTTCACAAAAT s panTro5.chr4 119660372 144 - 194502333 agaatggtgcttggcccagaaagcagggactccatctacataaattgagtgcatTTATGTATAGGCAAAAGGAGGTGCTGTAAAACCACAGAATAGAAGGTCTC----CA----CACACATTTCTTAGATGAGTCCTGCAATTTCACAAAAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121074194 144 - 195804263 agaatggtgcttggcccagaaagcagggactccatctacataaattgagtgcatTTATGTATAGGCAAAAGGAGGTGCTGTAAAACCACAGAATAGAAGGTCTC----CA----CACACATTTCTTAGATGAGTCCTGCAATTTCACAAAAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4503202 119 - 17550833 agaatggtgcttggcccagaaagcagggactccatatacataaattgagtgcatTTATGAATAGGCAAAAGGAGGTG-------------------------TC----CA----CACACATTTCTTACATGAGTCCTGCAATTTCACAAAAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69372555 143 - 118206036 agaatggtgtttggcccagaaagcagggactccacgtacataaattgagtgcatTTATGAATAGGC-AAAGGAAGTGTTGTAAAACCACATAATAGAAGGTCTC----CA----CACACATTTCTTAGATGAGTCCTGCAATTTCACAAAAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111585835 144 - 190429646 agaaaggtgcttggcccagaaagcagggactccatgtacataaattgagtgcatTTATGAATAGGCAAAAGGAGGTGTTGCAAAACCACAGAATAGAAGGTCTC----CA----CACACATTTCTTAGATGAGTCCTGCAATTTCACAAAAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110755016 144 - 189454096 agaaaggtgcttggcccagaaagcagggactccatgtacataaattgagtgcatTTATGAATAGGCAAAAGGAGGTGTTGCAAAACCACAGAATAGAAGGTCTC----CA----CACACATTTCTTAGATGAGTCCTGCAATTTCACAAAAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13321444 144 + 26754465 agaaaggtgcttggcccagaaagcagggactgcatgtacataaattgagtgcatTTATGAATAGGCAAAAGGAGGTGTTGCAAAACCACAGAATAGAAGGTCTC----CA----CACACATTTCTTAGATGAGTCCTGCAATTTCACAAAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4222912 144 - 5137665 agagtggtgcttggcccagaaagcagggactccgtgtacataaattgagtgcatTTATGAATAGGCAAAAGGGGGTGTTGCAAAACCACAGAATAGAAGGTCTC----CA----CACACATTTCTTAGATGAGCCCTGCAATTTCACAAAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122932326 144 - 135778131 agaatggtgcttggcccagaaagcagggactccatgtacataaattgagtgcatTTATGAATAGACAAAAGGAGGTGTTGCAAAACCACAGAATAGAAGGTCTC----CA----CACACATTTCTTAGATGAGTCCTGCAATTTCACAAAAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2044814 144 + 2427316 agaatggtgcttggcccagaaagccgggactccatgtacataaattgagtgcatTTATGAATAGGCAAAAGGAGGTGTTGCAAAACCACAGAATAGAAGGTCTC----CA----CACACATTTCTTAGATGAGTCCTGCAATTTCACAAAAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1340233 144 + 1448899 agaatggcgcttggtccagaaagcagggactccatgtacataaattgagtgcatTTATGAATAGGCAAAAGGAGGTGTTGCAAAACCACAGAATAGAAGGTCTC----CA----CACACATTTCTTAGATGAGTCCTGCAATTTCACAAAAT i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8212445 142 - 15139346 agaacggtgtttggcccagaaagaaggcacttgatgtacatcaattgagtgcatTTATGAATTGGCAAAAGGAAGTGTTGCACAACCACAGAATAGAAGGTCTC----------CACACATTTCTTAGATGAGTCCTACAATTTCACAAAAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6999261 143 - 7304997 agaatggtgtttggcccagaaagcaggcacttgatgtacataaattgagtgcatTTATGAATTGGC-AAAGGAAGTGTTGCACAACCATGGAATAGAAGGTCTC----CA----CACACATTTCTTAGATGAGTCCTACAATTTCACAAAAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9417012 144 - 11631747 agaatggtgtttggcccagaaagcaggcactcgatgtacataaattgagtgcatTTATGAATTGGCAAAAGGAAGTGTTGCACAACCACAGAATAGAAGGTCTC----CA----CACACATTTCTTAGATGAGTCCTACAATTTCACAAAAT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8642752 147 + 8790067 agaatggtgctttgcccagaaactaggtgttTTATGTACAGAGAGTCAGTGAATTTAGGAACAGACAAAAGGAAGTGTTGTATATGTACAGAATAGAAGGACTTCATGCA----CATGCATTTCATAGATGAACCTTACAA-TTAACAAAAC i otoGar3.GL873602 C 0 I 744 s mm10.chr5 76446084 99 + 151834684 GGAATGGCGC----------------AGGCTCCAT-------------GTCCCTTTCAGGGTGCACAGAAGAAGGAGTTACACA-----AGAAGAGAAATGCCT------------------TTCTACGTGAGCCTTGTTATTTCATAAAT- i mm10.chr5 C 0 C 0 s canFam3.chr13 48029742 146 + 63241923 agaatggcgcttggctcagaaagtaggtactcaatgaatatatattgagtggatTTATGAATAGGCAAAAGGAGGTGTTGCACAACCACAGAAC-TAAGATCTC----TAGATGAATGAATTCCTTAGATAAA-CCTGCTATTTCACAAAAT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4125016 128 - 5279953 AGGAGAACACTTGTTCCAAAGAGCAGGAGCT--------------------AATTTATGAATGGGCAGGAGGGTGTGTTGCACAAGCACAGAATAGAAGGTCTC----CAGCAAAATGCATTCCTTAGACGAGTCCTGCTAGTTCAGAAAAT i dasNov3.JH568349 M 1186 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e calJac3.chr3 53047177 290 - 190850796 I a score=1738387.000000 s hg38.chr4_KI270787v1_alt 93246 167 + 111943 ATAGGCACGT-TTTCTAATTGCTACTGCTGAATTCATGATGTAAGGCAAGATTTTTGGTTTTCTAGAGGA--TAAATTTGGCGTTGGTTTGCACACCTTT---------------TATCAAGAC-TTTTTTTAAGTAC---------TATCTTCAGCAACAGGTTTGTATATCTGCCAATTCTC-CTATTCGTAGG s panTro5.chr4 119660516 166 - 194502333 ATAGGCACGT-TTTTTAATTGCTACTGCTGAATTCATGATGTAAGGCAAGATTTTTGGTTTT-TAGAGGA--TAAATTTGGCGTTGGTTTGCACACCTTT---------------TATCAAGAC-TTTTTTTAAGTAC---------TATCTTCAGCAACAGGTTTGTATATCTGCCAATTCTC-CTATTCGTAGG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121074338 165 - 195804263 ATAGGCACGT-TTTTTAATTGCTACTGCTGAATTCATGATGTAAGGCAAGATTTTTGGTTTT-TAGAGGA--TAAATTTGGCGTTGGTTTGCACACCTTT---------------TATCAAGAC--TTTTTTAAGTAC---------TATCTTCAGCAACAGGTTTGTATATCTGCCAATTCTC-CTATTCGTAGG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4503321 167 - 17550833 ATAGGCATGT-TTTTTAATTGCTACTGCTGAATTCATGATGTAAGGCAAGATTTTTGGTTTTCTAGAGGA--TAAATTTGGCGTTGGTTTGCACACCTTT---------------TATCAAGAC-TTTTTTTAAGTAC---------TAACTTCAGCAACAGGTTTGTATATCTGCCAATTCTC-CTATTTGTAGG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69372698 167 - 118206036 ATAGGCATGT-TTTTTAATTGTTACTGCTGAATTCATGATGTAAGGCAACATTTTTGGTTTTCTAGAGGA--TAAATTTGGTGTTGGTTTGCACACATTT---------------TATCAGGAG-TTTTTTTAAGTAC---------TATATTCAGCAACAGGTTTGTATATCTGCCAGTTCTC-CTATTTGTAGG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111585979 167 - 190429646 ACAGGCATGGTTTTTTTTTTGCTACTGCTGAATTCATGATGTAAGGCAAGATTTTTGATTTTCTAGAGGA--TAAATTTGGTGTTGGTCTGCACACCTTT---------------TATCAAGAC-TTTTTTTAAGTAC---------TATATTCAGCAACA-GTTTGTATATCTGCCAGTTCTC-CTATTTGTAGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110755160 166 - 189454096 ACAGGCATGG-TTTTTTTTTGCTACTGCTGAATTCATGATGTAAGGCAAGATTTTTGATTTTCTAGAGGA--TAAATTTGGTGTTGGTCTGCACACCTTT---------------TATCAAGAC-TTTTTTTAAGTAC---------TATATTCAGCAACA-GTTTGTATATCTGCCAGTTCTC-CTATTTGTAGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13321588 166 + 26754465 ACAGGCATGG-TTTTTTTTTGCTACTGCTGAATTCATGATGTAAGGCAAGATTTTTGATTTTCTAGAGGA--TAAATTTGGTGTTGGTCTGCACACCTTT---------------TATCAAGAC-TTTTTTTAAGTAC---------TATATTCAGCAACA-GTTTGTATATCTGCCAGTTCTC-CTATTTGTAGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4223056 166 - 5137665 ACAGGCACGT-TTTTTTATTGCTACTGCTGAATTCATGATGTAAGGCAAGATTTTTGATTTTCTAGAGGA--TAAATTTGGTGTTGGTTTGCACACCTTT---------------TATCAAGAC-TTTTTTTAAGTAC---------TATATTCAGCAACA-GTTTGTATATCTGCCAGTTCTC-CTATTTGTAGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122932470 167 - 135778131 ACAGGCACGT-TTTTTAATTGTTACTGCTGAATTCATGATGTAAGGCAAGATTTTTGATTTTCTAGAGGA--TAAATTTGGTGTTGGTTTGCACACCTTT---------------TATCAAGACTTTTTTTTAAGTAC---------TATATTCAGCAACA-GTTTGTATATCTGCCAGTTCTC-CTATTTGTAGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2044958 166 + 2427316 ACAGGCACGT-TTTTTTATTGCTACTGCTGAATTCATGATGTAAGGCAAGATTTTTGATTTTCTAGAGGA--TAAATTTGGTGTTGGTTTGCACACCTTT---------------TATCAAGAC-TTTTTTTAAGTAC---------TATATTCAGCAACA-GTTTGTATATCTGCCAGTTCTC-CTATTTGTAGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1340377 166 + 1448899 ATAGGCACGT-TTTTTAATTGCTACTGCTGAATTCATGATGTAAAGCAAGATTTTTGATTTTCTAGAGGA--TAAATTTGGTGTTGGTTTGCACACCTTT---------------TATCAAGAC-TTTTTTTAAGTAC---------TATATGCAGCAACA-GTTTGTATATCTGCCAGTTCTC-CTATTTGTAGG i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8212587 164 - 15139346 ATAGGCACA--GTTTTAATTGCTA-TGTTGAATTCATGACGTAAGGCAAGATTTTTAGTTTTCTAGAGGA--TAAATTCGGTATTGGTTTGCACACCTTT---------------TATCAAG-C-TCTTTTTAAGTAC---------TATATTCAGCAACAGTTTTGTGAATCTGCCAGTTCGC-CTATTTGTAGG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6999404 166 - 7304997 ATAGGCATA--TTTTTAATTGCTGCTGTTGAATTCATGACGTAAGGCAAGATTTTTTGTTTTCTAGAGGA--TAAATTTGGTATTGGTTTGCACACCTTT---------------TATCAAGAT-TCTTTTCAAGTAC---------TATATTCAGCAACAGTTTTGTAAATCTGCCAGTTCGC-CTATTTGTAGG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9417156 166 - 11631747 ATATGCACA--TTTTTAATTGCTACTGTTGAATTCATGACGTAAGGCAAGATTTTTGGTTTTCTAGAGGA--TAAATTTGGTATTGGTTTGCACACCTTT---------------TATTAAGAC-TCTTTTTAAGTAC---------TATATTCAGCAACAGTTTTGTAAATCTGCCAGTTCGC-CTATTTGTAGG i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8643643 155 + 8790067 ACAGGCATC--TCTTATGCTGCTACTTCTGAATTCGTGATGTAAGCCCAAA----------ACTGGTAGA--CAAATGTGATGTTGAT-TGCATACTTGT---------------TATTAATGCGTTTTTTAAAGTAC---------TATATTCAGGAACAATTTTATAAACCTACCATTTC-C-ACATTTGTAGG i otoGar3.GL873602 I 744 C 0 s mm10.chr5 76446183 176 + 151834684 GCAGGCAAG--ATTTAAACCACTACTGCTTCATTTATGGCTTAAGGCAAGGTCTTT-----------GGA--TAAATATGGTGCTGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtatgta-tgtatgtatgtatgtatgtgAATATCTTTAGAGACAGCTTTCGAAGCCTGCCA---CTT-CTGTTTGGAGG i mm10.chr5 C 0 C 0 s canFam3.chr13 48029888 168 + 63241923 ATAAGCAT---TTTTAAACCACTACTGCTAAATTGATGATGTAAGGGAAGACATTTGGCTTTCTGAGAAACGTAAATTTGGTGTTGATTTGCATTTATTT---------------TATCAAGAT-TTTTCATAAGTAC---------TATATTCAGAAACAGTTTTGTAAATCTGCTACTTTTCTCTATTTATAGG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4125144 168 - 5279953 ACACACATT--TGTAAAACTGCTACTGCTAAATTCATGATGTAAGGCACAGCTTTCGACTTTCTGGAAGACATGAATGTGGTGCTGATCTGCGCACCTTT---------------TATCAAAAAATTTCTTTCATTAC---------TATACTTGGAGACAATTTTATAT-TTTGTCATTTCTC-CTATTTTTAAA i dasNov3.JH568349 C 0 I 1373 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e calJac3.chr3 53047177 290 - 190850796 I a score=1066301.000000 s hg38.chr4_KI270787v1_alt 93413 91 + 111943 TATTTAGCCAGAGGATGGTCATTTTCCCACCCTTGGTTTATAAAAATAACCTATCCCTGGCAGTAATGCATGCcaaactaaaatgggcgtt s panTro5.chr4 119660682 91 - 194502333 TATTTAGCCAGAGGATGGTCATTTTCCCACCCTTGGTTTATAAAAATAACCTATCCCTGGCAGTAATGCATGCcaaactaaaatgggcgtt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121074503 91 - 195804263 TATTTAGCCAGAGGATGGTCATTTTCCCACCCTTGGTTTATAAAAATAACCTATCCCTGGCAGTAATGCATGCcaaactaaaatgggcgtt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4503488 91 - 17550833 TATTTAGCCAGAGGATGGTCATTTTCCCACCCTTGGTTTATAAAAATAACCTATCCCTGGCAGTAATGCATGCcaaactaaaatgggcgtt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69372865 91 - 118206036 TATTTAGCCAGAGGATGGTCATTTTCCCACCCTTGGTTTATAAAAATAACCTATCCCTGGCAGTAATGCAGACCAAACTAAAACGGGCATT i nomLeu3.chr9 C 0 I 2541 s rheMac8.chr5 111586146 91 - 190429646 TACTTAGCCAGAGGATGGTCATTTTCCCACCCTTGGTTTATAAGAATAACCTATCCCTGGCAGTAATGCATGCCAAACTACAATGGGCATT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110755326 91 - 189454096 TACTTAGCCAGAGGATGGTCATTTTCCCACCCTTGGTTTATAAGAATAACCTATCCCTGGCAGTAATGCATGCCAAACTACAATGGGCATT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13321754 91 + 26754465 TACTTAGCCAGAGGATGGTCATTTTCCCACCCTTGGTTTATAAGAATAACCTATCCCTGGCAGTAATGCATGCCAAACTACGATGGGCATT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4223222 91 - 5137665 TATTTAGCCAGAGGATGGTCATTTTCCCACCCTTGGTTTATAAGAATAACCTATCCCTGGCAGTAATGCATGCCAAACTACAATGGGCATT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122932637 91 - 135778131 TATTTAGCCAGAGGATGGTCATTTTCTCACCCTTGGTTTATAAGAATAACCTATCCCTGGCAGTAATGCATGCCAAACTACAATAGGCATT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2045124 91 + 2427316 TATTTAGCCAGAGGATGGTCATTTTCCCACCCTTGGTTTATAAGAATAACCTATCCCTGGCAGTAATGCATGCCAAACTACAATGGGCATT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1340543 91 + 1448899 TATTTAGCCAGAGGATGGTCATTTTCCCACCCTCGGTTTATAAAAATAACCTATCCCTGGCAGTAATGCATGCCAAACTAAAATGGGCATT i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8212751 91 - 15139346 CATTTAGCCAGGGGATAGTTGTTTTCCCACCTTTGGTTTATAAAAATAACCTATCGCTGGCAGTAATGCATGCcaaactaaaatgggcatt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6999570 83 - 7304997 CATTTAGCCAGAGGATAGTTGTTTTCCCACCTTTGGTT--------TAACCTATCCCTGGCAGTAATGCATGCcaaactaaaatgggtatt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9417322 91 - 11631747 CATTTAGCCAGAGGATAGTTGTTTTCCCACCTTTGGTTTATAAAAATAACCTATCCCTGGCAGTAATGCATGCcaaactaaaatgggtatt i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8643798 91 + 8790067 TGTTCAGCCAGAGGATGGCAGTCTGCTTACCCTTAGTTTATAAAAACAACCTGTGCCTGGCAGTTATTCATGATAAACTGTAATTGGCATC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76446359 89 + 151834684 TATTTAGGCAGAGAATGCTGGTTGGTCCTTTTGTGGTTTATGAACACAGCATATCCCTGACCATAGAACATG-CAAGTTTTAAGAGATAC- i mm10.chr5 C 0 C 0 s canFam3.chr13 48030056 91 + 63241923 TATTTAGCTAAAGGATGGTGGTTTGCCCACCCCTAGTCTATAGAAACAATCTCTCCCTGATTGTAATGCATGGTAAACTTTAATGGCCATA i canFam3.chr13 C 0 I 2 s dasNov3.JH568349 4126685 89 - 5279953 tatttagccagaggatggtggtttcaccatccctgGATTTTGTAAACAATC--TCCCTATCAGTAATGTATGGTAAAATTTAATAGgcata i dasNov3.JH568349 I 1373 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e calJac3.chr3 53047177 290 - 190850796 I a score=2253317.000000 s hg38.chr4_KI270787v1_alt 93504 207 + 111943 aaaaggtcaccttggaca-----tttgat-----aaaaaa----cacaggattcctttgcaccttggaaattctgattaggtagctctggggtggagcccaggaatctgtattccta--------------aagggctctccagattattttgatgaggaccatgctgtgagaaatgctgTGTTTGAGGCT--AAGAATGAACATTATTGATATCATTTTATTTTTCTTATATGAGT s panTro5.chr4 119660773 207 - 194502333 aaaaggtcaccttggaca-----tttgat-----aaaaaa----cacaggattcttttgcaccttggaaattctgattaggtagctctggggtggagcccaggaatctgtattccta--------------aagggctctccagattattttgatgaggaccatactgtgagaaatgctgTGTTTGAGGCT--AAGAATGAACATTATTGATATCATTTTATTTTTCTTATATGAGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121074594 207 - 195804263 aaaaggtcaccttggaca-----tttgat-----aaaaaa----cacaggattcctttgcaccttggaaattctgattaggtagctctggggtggagcccaggaatctgtattccta--------------aagggctctccagattattttgatgaggaccatactgtgagaaatgctgTGTTTGAGGCT--AAGAATGAACATTATTGATATCATTTTATTTTTCTTATATGAGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4503579 206 - 17550833 aaaaggtcaccttggaca-----tttgat-----aaaaaa----cacaggattcctttgcaccttggaaattctgattaggtagctctagggtggagcccaggaatctgtattcct---------------aagggctcttcagattattctgatgaggaccatactgtgagaaatgctgTGTTTGAGGCT--AAGAATGAACATTATTGATATCATTTTATTTTTCTTATATGAGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69375497 207 - 118206036 AAAAGGtcaccttggaca-----tttgat-----aaaaaa----cacaggattccttggcaccttggaaattctgattaggtagctctggggtggagcccaggaatctgtattccta--------------aagggctctccagattattttgatgaggaccatactgtgagaaATGCTATGTTTGAGGCT--AAGAATGAACATTATTGATATCATTTTATTTTTCTCATATGAGT i nomLeu3.chr9 I 2541 C 0 s rheMac8.chr5 111586237 208 - 190429646 -AAAAGTCACCTCGGCCA-----TTTGAA-----AAAAAACA--CACAGGATTCCTTTGCACCTTGGATGttctgattaggtagctctggggtggagcccaggaatctgtattccta--------------aaaggctctccagattattttgatgcggaccatactgcgagaaatgctgTGTTTGAGGCT--AAGAATGAACATTATTGATATCATTTTATTTTTCTTATATGAGT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110755417 208 - 189454096 -AAAAGTCACCTCGGCCA-----TTTGAA-----AAAAAACA--CACAGGATTCCTTTGCACCTTGGATGttctgattaggtagctctggggtggagcccaggaatctgtattccta--------------aaaggctctccagattattttgatgaggaccatactgcgagaaatgctgTGTTTGAGGCT--AAGAATGAACATTATTGATATCATTTTATTTTTCTTATATGAGT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13321845 208 + 26754465 -AAAAGTCACCTCGGCCA-----TTTGAA-----AAAAAACA--CACAGGATTCCTTTGCACCTTGGATGttctgattaggtagctctggggtggagcccaggaatctgtattccta--------------aaaggctctccagattattttgatgaggaccatactgcgagaaatgctgTGTTTGAGGCT--AAGAATGAACATTATTGATATCATTTTATTTTTCTTATATGAGT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4223313 210 - 5137665 -AAAAGTCACCTTGGCCA-----TTTGAA-----AAAAAAAAACCACAGGATTCCTTTGCAccttggatattctgattaggtagctctggggtggagcccaggaatctgtattccta--------------aaaggctctccagattattttgatgaggaccatactgcgagaaatgctgTGTTTGAGGCT--AAGAATGAACGTTATTGATATCATTTTATTTTTCTTGTATGAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122932728 209 - 135778131 -AAAAGTCACCTCAGACA-----TTTGAA-----AAAAAACCA-CACAGGATTCCTTTGCAccttggatattctgattaggtagctctggggtggagcccaggaatctgtattccta--------------aaaggctctccagattattttgatgaggaccatactgtgagaaatgctgTGTTTGAGGCT--AAGAATGAACATTATTGATATCATTTTATTTTTCTTATATGAGT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2045215 209 + 2427316 -AAAAGTCACCTTGGCCA-----TTTGAA-----AAAAAAAAA-CACAGGATTCCTTTGCAccttggacattctgattaggtagctctggggtggagcccaggaatctgtattccta--------------aaaggctctccagattattttgatgaggaccatactgcgagaaataccgTGTTTGAGGCT--AAGAATGAACACTATTGATATCATTTTATTTTTCTTGTATGAGT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1340634 210 + 1448899 -AAAAGTCACCTCAGCCA-----TTTGAA-----AAAAAAaaaacacaggattcctttgcaccttcgatattctgattaggtagctctggggtggagcccaggaatctgtattccta--------------aaaggctctccagattattttgatgaggaccatactgtgagaaatgctgTGTTTGAGGCT--AAGAATGAACATTATTGATATCATTTTATTTTTCTTATATGAGT i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8212842 207 - 15139346 aaaaggtcgcctcggaca-----tttgat-----taaaaa----cacaggattcctttggaccttggaaattctgattaggtagctctgggatggagcccaggaatgtgtactccca--------------aaaggctctccagattattttgatgaggaccatactatgagaaATGCCCTATTTGAGGGT--AAGAATGAACATTATTGATTTCGTTTGATTTTTCTTACATGAGC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6999653 205 - 7304997 aaaaggtcaccttggaca-----tttgat-----taaaaa----cacaggattcctttgcaccttggaaattctgattaggtagcactggggtagagcccaggaa--tgtactccta--------------aaaggctctccagattattttgacgaggaccatactatgagaaGTGCTCTATTTGAGGGT--AAGAATGAACATTATTGATTTCATTTGATTTTTCTTATATGAGC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9417413 206 - 11631747 aaaaggtcacctcggaca-----tttgat-----taaaaa----cacaggattcctttgcaccttggaaattctgattaggtagctctggggtggagcccaggaatgtgtactccta--------------aaaggctctgcagattattttgat-aggaccatactatgagaaATGCTCTGTTTGAGGGT--AAGAATGAACATTATGGATTTCATTTGATTCTTCTTATATGAGC i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8643889 214 + 8790067 ATAAGGTCATCTGGGGAATTATTTTTTAA-----AAAAGGCA--AACAAGATTCCTTTGTccctcagagattttgatttggtagatctggggtagagtccaacaatctgtattcctc--------------gaagtctctccagattattttgatgaggatcatactttgagaaAGATTGTGCTTAAGGAT--AAGAGTGAAAATTATTCATTTTGTCTTATTTTTCTTATATGTAT i otoGar3.GL873602 C 0 I 6 s mm10.chr5 76446448 215 + 151834684 AAAAAGTCACCTGGCACA-----TTCAAT-----CAGAAA----TATAACAATCCTTTCTGCCCAGAAAGCTCTGAGTAAGTGGCTGAGAGACTGAAT-CAGGAttttttctttttctttttttttttttttAAGATGCTTCAGATTATTTTGATGA-GAGCATTCT-TAAGAAACTCTGCTTTGGGTGGTTGAAAAATGATTATCTCTGA-----TTTTATTTTTCTCATTTAAGC i mm10.chr5 C 0 C 0 s canFam3.chr13 48030149 194 + 63241923 AAAAaatcacctgggaga-----tctgatttttaaaaaaata--ctcaaaa-tcctttatactctagaaattcagatttagtaggtctggggtgcaacc--------tatagtctta--------------agacgctctccagatcattttgatgAGGATTGCACTGTGAGAAACACTGTGTTTGAGGCT--AAGAGCAAACATTATTTA-----------GTTTTTTATATGAGT i canFam3.chr13 I 2 C 0 s dasNov3.JH568349 4126774 186 - 5279953 --agaatcacccaggata-----cttaat-----aaacc-----tgtagggtccctttgctccttggaaattctgg---aacaattctg-------acccaggaatgtata-tccta--------------aaaagctctctagattatatttatgcatagcacactttcagaagcactgTGTTTGAGGCT--AAGAGCAAACACTATTGA-----TTTTAATGCTCTTATATGA-- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e calJac3.chr3 53047177 290 - 190850796 I a score=698516.000000 s hg38.chr4_KI270787v1_alt 93711 58 + 111943 ATTATTTTTGTGTGAAGACTGAAACAAATCATGTTGAAATATTGAAA-----TATTGGGAAGT s panTro5.chr4 119660980 58 - 194502333 ATTATTTTTGTGTGAAGACTGGAACAAATCATGTTGAAATATTGAAA-----TATTGGGAAGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121074801 58 - 195804263 ATTATTTTTGTGTGAAGACTGGAACAAATCATGTTGAAATATTGAAA-----TATTGGGAAGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4503785 58 - 17550833 ATTATTTTTGTGTGAAGACTGGAACAAATCATGTTGAAATATTGAAA-----TATTGGGAAGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69375704 58 - 118206036 ATTATTTTTGTGTGAAGACTGGAACAAATCATGTTGAAATGTTGAAA-----TATTGGGAAGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111586445 58 - 190429646 ATTATTTTTGTGTGAAGACTGGAACAAATCATGTTGAAATATTGAAA-----TACTGGGAACT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110755625 58 - 189454096 ATTATTTTTGTGTGAAGACTGGAACAAATCATGTTGAAATATTGAAA-----TACTGGGAACT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13322053 58 + 26754465 ATTATTTTTGTGTGAAGACTGGAACAAATCATGTTGAAATATTGAAA-----TACTGGGAACT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4223523 58 - 5137665 ATTATTTTTGTGTGAAGACTGGAACAAATCATGTTGAAATATTGAAA-----TACTGGGAACT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122932937 58 - 135778131 ATTATTTTTGTGTGAAGACTGGAACAAATCATGTTGAAATATTGAAA-----TACTGGGAACT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2045424 58 + 2427316 ATTATTTTTGTGTGAAGACTGGAACAAATCATGTTGAAATATTGAAA-----TACTGGGAACT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1340844 58 + 1448899 AATATTTTTGTGTGAAGACTGGAACAAATCATGTTGAAATATTGAAA-----TACTGGGAACT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53047467 58 - 190850796 ATTACTTTTATATGAAGACTGGAACAGATCATGTTGAAATATTAAAA-----CATTGGGAAGT i calJac3.chr3 I 290 C 0 s saiBol1.JH378162 8213049 58 - 15139346 ATTACTTTTACGTGAAGACTGGAACAGATCATGTTGAAATACTGAAA-----CACTGGGAAGT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6999858 58 - 7304997 ATTACTTTTATGTGAAGACTGGAACAGATCATGTTGAAATATTGAAA-----CACTGAGAAGT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9417619 58 - 11631747 ATTACTTTTATGTGAAGACTGGAACAGATCATGTTGAAATATTGAAA-----CACTGGGAAGT i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8644109 53 + 8790067 ATTATTTTCA--TCAAAACTGGAACAGAACATGTT---CTATTAAAA-----TATTGAGAAGT i otoGar3.GL873602 I 6 I 92 s mm10.chr5 76446663 62 + 151834684 TTTATTTCCGT-TGAAGTCTGGAACAAATCCTATGAACAAATCCTTGCCCTCTACTGGAGGGC i mm10.chr5 C 0 I 8 s canFam3.chr13 48030343 50 + 63241923 --TATGTTTA--TGAATGTTGGAACAGAATATGTT----TTATGAAA-----TATTAGGAAGT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4126960 51 - 5279953 ---ACTCTTTTGTGAAGACAAGAACAGAACATGTT----TTCTTAAA-----TATTAGAACGT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I a score=1883172.000000 s hg38.chr4_KI270787v1_alt 93769 164 + 111943 CTGCATAATTTCAGATTTTCAGTTAGTAATTACACTACCCAGAATCCTTTCTTCCT---AGAA---TA-------------------GCAATTATAATTTCTATATTCCAAATTAAGCAAA---------GAG------AAATGTTAGTTGAGAAAGAAGATAGCACTATTATATAGCAAAGATACTACCATTCCTGTGTTATC s panTro5.chr4 119661038 164 - 194502333 CTGCATAATTTCAGATTTTCAGTTAGTAATTACACTATCCAGAATCCTTTCTTCCT---AGAA---TA-------------------GCAATTATAATTTCTATATTCCAAATTAAGCAAA---------GAG------AAATGTTAGTTGAGAAAGAAGATAGCACTATTATATAGCAAAGATACTACCATTCTTGTGTTATC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121074859 164 - 195804263 CTGCATAATTTCAGATTTTCAGTTAGTAATTACACTATCCAGAATCCTTTCTTCCT---AGAA---TA-------------------GCAATTATAATTTCTATATTCCAAATTAAGCAAA---------GAG------AAATGTTAGTTGAGAAAGAAGATAGCACTATTATATAGCAAAGATACTACCATTCTTGTGTTATC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4503843 163 - 17550833 CTGCATAATTTCAGATTTTCAGTTAGTAATTACACTATCCAGAATCCTTTCTTCCT---AGAA---TA-------------------GCAATTATAATTTCTATATTCCAAATTAAGCAAA---------GAG------AAATGTTA-CTGAGAAAGAAGATGGCACTATTATATAGCAAAGATACTACCATTCCTGTGTTATC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69375762 163 - 118206036 CTGCATAATTTCAGATTTTCAGTTAGTAATTACACTACCCAGAATCCTTTCTTCCT---GGAA---TA-------------------GCAATTATAATTTCTCTATTCCAAATTAAGCAAA---------GAG------AAATGTTA-GTGAGAAAAAAGATGGCACTATTATATAGTAAAGATACTACCATTCCTGTGTTATC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111586503 163 - 190429646 CTGCATAATTTCAGATTTTCAGTTAGTAATAGCACTAGCCAGAATCCTTTCTTCCT---AGAA---TA-------------------GCAATTATAATTTCTTTATTCCAAATTAAGCAAA---------GAG------AAATGTTA-GTGAGAAAAAAGATGACAATATTATATAGTAAAAATACTACCATTCCTGTGTTTTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110755683 163 - 189454096 CTGCATAATTTCAGATTTTCAGTTAGTAATAGCACTAGCCAGAATCCTTTCTTCCT---AAAA---TA-------------------GCAATTATAATTTCTTTATTCCAAATTAAGCAAA---------GAG------AAATGTTA-GTGAGAAAAAAGATGACAATATTATATAGTAAAGATACTACCATTCCTGTGTTTTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13322111 163 + 26754465 CTGCATAATTTCAGATTTTCAGTTAGTAATAGCACTAGCCAGAATCCTTTCTTCCT---AAAA---TA-------------------GCAATTATAATTTCTTTATTCCAAATTAAGCAAA---------GAG------AAATGTTA-GTGAGAAAAAAGATGACAATATTATATAGTAAAGATACTACCATTCCTGTGTTTTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4223581 163 - 5137665 CTGCATAATTTCAGATTTTCAGTTAGTAATAGCACTAGCCAGAATCCTTTCTTCCT---AGAA---TA-------------------GCAATTATAATTTCTTTATTACAAATTAAGCAAA---------GAG------AAATGTTA-GTGAGAAAAAAGATGACAATATTATATAGTAAAGATACTACCATTCCTGTGTTTTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122932995 163 - 135778131 CTGCATAATTTCAGATTTTCAGTTAGTAATAGCACTAGCCAGAATCCTTTCTTCCT---AGAA---TA-------------------GCAATTATAATTTCTTTATTCCAAATTAAGCAAA---------GAG------AAATGTTA-GTGAGAAAAAAGATGGCAATATTATATAGTAAAGATACTACCATTTCTGTGTTATC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2045482 163 + 2427316 CTGCATAATTTCAGATTTTCGGTTAGTAATAGCACTAGCCAGAATCCTTTCTTCCT---AGAA---TA-------------------GCAATTATAATTTCTTTATTCCAAATTAAGCAAA---------GAG------AAATGTTA-GTGAGAAAAAAGATGACAATATTATATAGTAAAGATACTACCATTCCTGTGTTTTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1340902 163 + 1448899 CTGCATAATTTCAGATTTTCAGTTAGTAATAGCACTAGCCAGAATCCTTTCTTCCT---AGAA---TA-------------------GCAATTATAATTTCTATATTCCAAATTAAGCAAA---------GAG------AAATGTTA-GTGAGAAAAAAGATGGTAATATTATATAGTAAAGATACTACCATTCCTGTGTTATC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53047525 163 - 190850796 CTGCATAATTTCAGATTTTCAGTTAATAATTATATTACCCAGAATCCTTGCTTCCT---AGTA---TA-------------------GCAATGATAATTTCTATATTCCAAATTAAGCAGA---------GAG------AAATGTCA-GTGAGAAAAAATATGGCAATATTATATAGTAAAGATACTACCATTCCTGTGTTATC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8213107 163 - 15139346 CTGCATAATTTCAGATTTTCAGTTAGTAATTATATTACCCAGAATCCTTGCTTCCT---AGAA---TA-------------------GCAATGATAATTTCTATATTCCAAATTAAGCAGA---------GAG------AAATGTTA-GTGAGAAAAAATATGGCAATAATATATGGTAAAAATACTACCATTCCTGCGTTATC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 6999916 162 - 7304997 CTGCATAATTTCAGATTTTTAGTTAGTAATTATATTACCCAGAATCCTTGCTTCCT---AG-A---TA-------------------GCAATGATAATTTCTATATTCCAAATTAAGCAGA---------GAG------AAATGTTA-GTGAGAAAAAATATGGCAATATTATATAGTAAAGATACTACCATTCCTGTGTTACC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9417677 163 - 11631747 CTGCATAATTTCAGATTTTCAGTTAGTAATTATATTACCCAGAATCCTTGCTTCCT---AGAA---TA-------------------GCAATGATAATTTCTGTATTCCAAATTAAGCAGA---------GAG------AAATGTTA-GTGAGAAAAAACATGGCAATATTATATAGTAAAGATACTACCATTCCTGTGTTATC i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76446733 184 + 151834684 CTGCAAAACTTCAGAGTCTCAG----TAACTATGTTGGCCAGAATATTCCTTTAAA---AAAA---AAAAAAAAGGAAAAAAGAGCTGCAATTAGAATTTCCATATCCCCAAGTAAATACA---------CAGCGTCCAGAGAATGA-GTGAGATCAGGAGCATCAAGAGAACGTGGCACAGATACGTCCGTTCCTGCGCCGTc i mm10.chr5 I 8 I 541 s canFam3.chr13 48030393 175 + 63241923 CTAAATAATTTCAGATTTTCAGTTAGTAATTATACTACCAATTATTCTTCCTTTCTGGAAGAA---TA-------------------CTAATTATAAATTCCGTATTCTAAATTTGACAGGTACTATTACAAA------GAATGTTA-GTGAGAAGGAAAATGACAGTATTATATATTACAGACTCTCCAATCCCTGTGTTATC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4127011 154 - 5279953 CTGGCTAATTTCAGATTTGCTGTTAGTAATTATACTACCCAGAATTTTATTTTCTT---AGAAGATCA-------------------GCAATTACAGTTTCTGTATTCTAAATTAGATAGT---------TGT------AAAT---A-CAGAGAAGGCTAATGTCA---------AATAAAGACACCCCCATCCCTGTGTTATC i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e otoGar3.GL873602 8644162 92 + 8790067 I a score=514021.000000 s hg38.chr4_KI270787v1_alt 93933 56 + 111943 AGTGAGAAGGGCTAAAATGTAGCACTTGACTTGCTACGAATTAACTAAATGATTCT s panTro5.chr4 119661202 56 - 194502333 AGTGAGAAGGGCTAAAATGTAGCACTTGACCTGCTACGAATTAACTAAATGATTCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075023 56 - 195804263 AGTGAGAAGGGCTAAAATGTAGCACTTGACCTGCTACGAATTAACTAAATGATTCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504006 56 - 17550833 AGTGAGAAGGCCTAAAATGTAGCACTTGACCTGCTACGAATTAATTAAATGATTCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69375925 56 - 118206036 AGTGAgaaggcctagaatctagcgcttgacctgctacaaattaactaaatgattct i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111586666 56 - 190429646 AGTGAGAAGGCCTAAAATCTAGCACTTGACCTGCTACAAATTAACTAAATGATTCT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110755846 56 - 189454096 AGTGAGAAGGCCTAAAATCTAGCACTTGACCTGCTACAAATTTACTAAATGATTCT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13322274 56 + 26754465 AGTGAGAAGGCCTAAAATCTAGCACTTGACCTGCTACAAATTAACTAAATGATTCT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4223744 56 - 5137665 AGTGAGAAGGCCTAAAATCTAGCACTTGACCTGCTACGAATTAACTAAATGATTCT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122933158 56 - 135778131 AGTGAGAAGGCCTAAAATCTAGCACTTGACCTGCTACGAATTAACTAAATGATTCT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2045645 56 + 2427316 AGTGAGAAGGCCTAAAATCTAGCACTTGACCTGCTACGAATTAACTAAACGATTCT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1341065 56 + 1448899 AGTGAGAAGGCTTCAAATCTAGCACTTGACCTGCTACGAATTAACTAAATGATTCT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53047688 56 - 190850796 AGTGAGAAAGCCTGAAATCTAGCACTTGACCTGCTATGAATTAATTAAATTATTCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8213270 56 - 15139346 AGTGAGAAGGCCTGAAATCTAGCACTTGACTGACTATGAATTAATTAAGTGATTCC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7000078 56 - 7304997 AGTGAGAAGGCCTGAAATCTAGCACTTGACCTGCTATGAATTAATTAAATGATTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9417840 56 - 11631747 AGTGAGAAGGCCCGAAATCTAGCACTTGACCTGCTATGAATAAATTAAATGATTCT i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48030568 5 + 63241923 agtga--------------------------------------------------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4127165 14 - 5279953 CATGAgaaggcctg------------------------------------------ i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76446917 541 + 151834684 I e otoGar3.GL873602 8644162 92 + 8790067 I a score=497279.000000 s hg38.chr4_KI270787v1_alt 93989 44 + 111943 GAGAAggtcaggcatggtggctcacacctgtaatcccagcactt s panTro5.chr4 119661258 44 - 194502333 GAGAAggtcaggcatggtggctcacacctgtaatcccagcactt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075079 44 - 195804263 GAGAAggtcaggcatggtggctcacacctgtaatcccagcactt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504062 44 - 17550833 GAGAAggtcaggtatggtggctcacacctgtaatcccagcactt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69375981 44 - 118206036 gagaaggtcgggcatggtggctcacacctgtaatcccagcactt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111586722 44 - 190429646 GAGAAggtcaggcatggtggctcacacctgtaatcccagcactt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110755902 44 - 189454096 GAGAAggtcaggcatggtggctcacacctgtaatcccagcactt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13322330 44 + 26754465 GAGAAggtcaggcatggtggctcacacctgtaatcccagcactt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4223800 44 - 5137665 GAGAAggtcaggcatgatggctcacacctgtaatcccagcactt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122933214 44 - 135778131 GAGAAggtcaggcatggtggctcacacctgtaaccccagcactt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2045701 44 + 2427316 GAGAAggtcaggcatggtggctcacacctgtaatcccagcactt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1341121 44 + 1448899 GAGAAggtcaggcacggtggctcacacctgtaatcccagcactt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53047744 44 - 190850796 GCGAAggttagacatggtggctcacacctgtaatcccagcactt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8213326 44 - 15139346 GAGAAggttaggcatggtgactcatacctgtaatcccagcactt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7000134 44 - 7304997 GAGAAggttaggcatggtgactcacacctgtaatcccagcactt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9417896 44 - 11631747 GAGAAggttaggcatggtggctcacacctgtaatcccagcactt i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8644254 44 + 8790067 aaaatagctgggtgttgcggtgggtgcctgtagtcccagctact i otoGar3.GL873602 I 92 C 0 s canFam3.chr13 48030573 22 + 63241923 --gaaagcctg--------------------aattccagcattt i canFam3.chr13 C 0 I 15 s dasNov3.JH568349 4127179 13 - 5279953 -------------------------------aattctagccctt i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76446917 541 + 151834684 I a score=4556.000000 s hg38.chr4_KI270787v1_alt 94033 1 + 111943 -t s panTro5.chr4 119661302 1 - 194502333 -t i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075123 1 - 195804263 -t i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504106 1 - 17550833 -t i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69376025 1 - 118206036 -t i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111586766 1 - 190429646 -t i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110755946 1 - 189454096 -t i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13322374 1 + 26754465 -t i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4223844 1 - 5137665 -t i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122933258 1 - 135778131 -t i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2045745 1 + 2427316 -t i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1341165 1 + 1448899 -t i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53047788 1 - 190850796 -t i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8213370 1 - 15139346 -t i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7000178 1 - 7304997 -t i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9417940 1 - 11631747 -t i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8644298 1 + 8790067 -t i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4127192 1 - 5279953 g- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76446917 541 + 151834684 I e canFam3.chr13 48030595 15 + 63241923 I a score=767407.000000 s hg38.chr4_KI270787v1_alt 94034 80 + 111943 gggaggccgaggcaggaggatcgctt-tagcccaggagttcgag-----------------------accagtct-----gggcaacatag-tgagaccctgtctctata s panTro5.chr4 119661303 80 - 194502333 gggaggccgaggcaggaggatcgctt-tagcccaggagttcgag-----------------------accagtct-----gggcaacatag-tgagaccctgtctctata i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075124 80 - 195804263 gggaggccgaggcaggaggatcgctt-tagcccaggagttcgag-----------------------accagtct-----gggcaacatag-tgagaccctgtctctata i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504107 80 - 17550833 gggaggccgaggcaggaggatcgctt-tagcccaggagttcaag-----------------------accagtct-----gggcaacatag-tgagaccctgtctctata i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69376026 80 - 118206036 gggaggccgaggcagaaggatcgctt-tagcccaggagttcaag-----------------------accagtcg-----gggcaacatag-tgagaccctgtctctata i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111586767 79 - 190429646 gggaggctgaggcaggagaatcactt-tagcccaggagttagag-----------------------accagtct-----gggc-acatag-tgagaccctgtctctata i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110755947 79 - 189454096 gggaggctgaggcaggagaatcactt-tagcccaggagttagag-----------------------accagtct-----gggc-acatag-tgagaccctgtctctata i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13322375 79 + 26754465 gggaggctgaggcaggagaatcactt-tagcccaggagttagag-----------------------accagtct-----gggc-acatag-tgagaccctgtctctata i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4223845 80 - 5137665 gggaggctgaagcaggagaatcgctt-tagcccaggagttagag-----------------------accagtct-----gggc-acatagttgagaccctgtctctata i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122933259 77 - 135778131 gggaggccgaggcaggagaatcgctt-tagcccaggagttagag-----------------------accagtct-----gggc-acatag-tgagacc--gtctctata i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2045746 80 + 2427316 gggaggctgaggcaggtgaatcgctt-tagcccagaagttagaa-----------------------accagtct-----gggc-acatagttgagaccctgtctctata i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1341166 79 + 1448899 gggaggccgaggcaggagaatcgctt-tagcccaggagttagag-----------------------accagtct-----gggc-acatag-tgagcccctgtctctata i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53047789 80 - 190850796 gggaggctgagggaggaggatcactt-gagcccatgagttcaag-----------------------accagcct-----gggcaacatag-tgagaccctgtctctacc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8213371 80 - 15139346 gggaggctaagggaggaggatcgctt-gagcccgtgagttcaag-----------------------accagcct-----gggcaacatag-tgagacccagtctgtaca i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7000179 80 - 7304997 gggagaccgagggaggaggatcgctt-gagcccgtgagttcaag-----------------------accagccc-----gggcagcatag-tgagacactgtctctaca i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9417941 80 - 11631747 gggaggttgagggaggaggatcgctt-gagcccgtgagttcaag-----------------------acgagcca-----gggcaacatag-tgagaacctgtctctaca i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8644299 109 + 8790067 gggaggctgaggcaagagaatcgcctaaagcccaagagctggaggttgctgtgagatgtgatgtcacagcactctatagaggacaacaaag-tgagactttgtctctaaa i otoGar3.GL873602 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76446917 541 + 151834684 I e dasNov3.JH568349 4127193 0 - 5279953 C e canFam3.chr13 48030595 15 + 63241923 I a score=270631.000000 s hg38.chr4_KI270787v1_alt 94114 35 + 111943 -----acaaatacaaaaatta-------------------------gctgtgtggggtggcacat s panTro5.chr4 119661383 35 - 194502333 -----acaaatacaaaaatta-------------------------gctgtgtggggtggcacat i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075204 35 - 195804263 -----acaaatacaaaaatta-------------------------gctgtgtggggtggcacat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504187 35 - 17550833 -----acaaatacaaaaatta-------------------------gctgcgtggggtggcacat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69376106 35 - 118206036 -----aaaaatacaaaaatca-------------------------gctgggtggggtggcacat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111586846 35 - 190429646 -----aaaaatacacaaatta-------------------------gccgagtggggtggcaaat i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110756026 35 - 189454096 -----aaaaatacacaaatta-------------------------gccgagtggggtggcaaat i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13322454 35 + 26754465 -----aaaaatacataaatta-------------------------gccgagtggggtggcaaat i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4223925 35 - 5137665 -----aaaaatacacaaatta-------------------------gccgggtggggtggcaaat i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122933336 35 - 135778131 -----aaaaatacacaaatta-------------------------gccgagtagggtggcaaat i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2045826 35 + 2427316 -----aaaaatatacaaatta-------------------------gccgggtggggtggcaaat i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1341245 35 + 1448899 -----aaaaatacacaaatta-------------------------cctgggtggggtggcaaat i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8213451 35 - 15139346 -----aaaaatataaaaatta-------------------------gccaggtggggtggcacat i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7000259 35 - 7304997 -----aaaaatacaaaaatta-------------------------gccaggtagggtggcacat i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9418021 35 - 11631747 -----aaaaatacaaaaatta-------------------------gccaggtgaggtggcgtat i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8644408 65 + 8790067 aataaataaataaataaataaaATAAAACATTATTGAGAAGTCTGggccaggcatgacagctcat i otoGar3.GL873602 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76446917 541 + 151834684 I e dasNov3.JH568349 4127193 0 - 5279953 C e calJac3.chr3 53047869 0 - 190850796 C e canFam3.chr13 48030595 15 + 63241923 I a score=112688.000000 s hg38.chr4_KI270787v1_alt 94149 10 + 111943 acctgtagtc s panTro5.chr4 119661418 10 - 194502333 acctgtagtc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075239 10 - 195804263 acctgtagtc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504222 10 - 17550833 acctgtagtc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69376141 10 - 118206036 agctgtagtc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111586881 10 - 190429646 acctgtagtc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110756061 10 - 189454096 acctgtagtc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13322489 10 + 26754465 acctgtagtc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4223960 10 - 5137665 acctgtagtc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122933371 10 - 135778131 acctgtagtc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2045861 10 + 2427316 acctgtagtc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1341280 10 + 1448899 acctgtagtc i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8213486 10 - 15139346 acctgtagtc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7000294 10 - 7304997 acctgtagtc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9418056 10 - 11631747 gcctgtagtc i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8644473 10 + 8790067 gcctgtaatc i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4127193 10 - 5279953 atctgcaatt i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76446917 541 + 151834684 I e calJac3.chr3 53047869 0 - 190850796 C e canFam3.chr13 48030595 15 + 63241923 I a score=1032813.000000 s hg38.chr4_KI270787v1_alt 94159 120 + 111943 ccagccactcgggaaactgaggtaggaagaccacttgagcctaggaggtcgagactgcagtgagccaagatcacaccactgccctccagcctgggtgagag----aatgacactctgtctcaaa s panTro5.chr4 119661428 120 - 194502333 ccagccactcgggaaactgaggtaggaagaccacttgagcctaggaggtcgagactgcagtgagccaagatcacaccactgccctccagcctgggtgagag----aatgacactctgtctcaaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075249 120 - 195804263 ccagccactcgggaaactgaggtaggaagaccacttgagcctaggaggtcgagactgcagtgagccaagatcacaccactgccctccagcctgggtgagag----aatgacactctgtctcaac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504232 114 - 17550833 ccagccactcgggaaactgaggtaggaagaccacttgagcctgggaggtcgagactgcagtgagccaag------ccactgccctccagcctgggtgagag----aatgagactctgtctcaaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69376151 120 - 118206036 ccagccactcgggaagctgaggtaggaagaccacttgaacctgggaggtcgaggctgcagtgagccaagatcacgccactgccctcctgcctgggtgagag----aatgagactctgtctgaaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111586891 120 - 190429646 ccagtcactcgggaggctgaggtgggaagaccacttgagcctggaaggtcgaggctgcaagggtccaagatcacgccactgccctccagcctgggtgacag----aatgagactctgtctcaaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110756071 120 - 189454096 ccagtcactcgggaggctgaggtgggaagaccacttgagcctggaaggtcgaggctgcaagggtccaagatcacgccactgccctccagcctgggtgacag----aatgagactctgtctcaaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13322499 120 + 26754465 ccagtcactcgggaggctgaggtgggaagaccacttgagcctggaaggttgaggctgcaagggtccaagatcacgccactgccctccagcctgggtgacag----aatgagactctgtctcaaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4223970 120 - 5137665 ccagtcactcaggaggctgaggtgggaagaccacttgagcctggaaggtcgaggctgcaagggtccaagatcacgccactgccctccagcctgggtgacag----aatgagactctgtctcaaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122933381 120 - 135778131 ccagtcactcgggaggctgaggtgggaagaccacttgagcctggaaggtcgaggctgcaagggtccaagatcacaccactgccctccagcctgggtgacag----aatgagactctgtctcaaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2045871 120 + 2427316 ccagtcactcaggaggctgaggtgggaagaccacttgagcctggaaggtcgaggctgcaagggtccaagatcacgccactgccctccagcctgggtgacag----aatgagactctgtctcaaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1341290 120 + 1448899 ccagtcactcgggaggctgaggtgggaagaccacttgcgcctgggaggtcgaggctgcaggagtccaagatcacgccactgccctccagcctgggtgacag----aatgagactctgtctcaaa i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8213496 124 - 15139346 ccagccactcaggaggttaaggtgggagggccacttgaccccaggaggcagaggctgcagtgagccaagatcacaccactgccctccagtctaggtgacagagtaagtaagactctatctcaaa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7000304 120 - 7304997 ccagccactcaggaggttaaggtgggagggccacgtgagcccaggaggcagaggctgcagtgagccaagatcacaccactgccctccagtctaggtgacag----agtaaggctctgtctcaaa i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9418066 120 - 11631747 ccagtcactcgggaggttaaggtgggagggccacttgagcccaggaggcagaggctgcagtgagccaagatcacaccactgccctccagtctaggtgacag----agtaagactctgtctcaaa i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8644483 87 + 8790067 ctagcactctgggaggccgagatgggtggactgcttgagttcaggagtttgaga-------------------------------ccagcctgagca--ag----agtgagactctgtctctac i otoGar3.GL873602 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76446917 541 + 151834684 I e dasNov3.JH568349 4127203 0 - 5279953 C e calJac3.chr3 53047869 0 - 190850796 C e canFam3.chr13 48030595 15 + 63241923 I a score=81330.000000 s hg38.chr4_KI270787v1_alt 94279 8 + 111943 aagaaaga s panTro5.chr4 119661548 8 - 194502333 aagaaaga i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075369 8 - 195804263 aagaaaga i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504346 8 - 17550833 aagaaaga i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69376271 8 - 118206036 aagaaaga i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111587011 8 - 190429646 aagaaaga i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110756191 8 - 189454096 aagaaaga i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13322619 8 + 26754465 aagaaaga i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4224090 8 - 5137665 aagaaaga i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122933501 8 - 135778131 aagaaaga i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2045991 8 + 2427316 aagaaaga i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1341410 8 + 1448899 aagaaaga i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8213620 8 - 15139346 aagaaaga i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7000424 8 - 7304997 aagaaata i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9418186 8 - 11631747 aagaaata i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8644570 8 + 8790067 taaaaata i otoGar3.GL873602 C 0 C 0 s dasNov3.JH568349 4127203 8 - 5279953 aagaaatt i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76446917 541 + 151834684 I e calJac3.chr3 53047869 0 - 190850796 C e canFam3.chr13 48030595 15 + 63241923 I a score=58429.000000 s hg38.chr4_KI270787v1_alt 94287 6 + 111943 aaatga s panTro5.chr4 119661556 6 - 194502333 aaatga i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075377 6 - 195804263 aaatga i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504354 6 - 17550833 aaatga i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69376279 6 - 118206036 aaatga i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111587019 6 - 190429646 aaaTAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110756199 6 - 189454096 aaaTAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13322627 6 + 26754465 aaaTAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4224098 6 - 5137665 aaaTAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122933509 6 - 135778131 aaaTAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2045999 6 + 2427316 aaaTAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1341418 6 + 1448899 aaaTAA i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8213628 6 - 15139346 aaatga i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7000432 6 - 7304997 aaaTGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9418194 6 - 11631747 aaaTGA i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8644578 6 + 8790067 caaaag i otoGar3.GL873602 C 0 I 258 s canFam3.chr13 48030610 6 + 63241923 aagtga i canFam3.chr13 I 15 C 0 s dasNov3.JH568349 4127211 6 - 5279953 aagtta i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76446917 541 + 151834684 I e calJac3.chr3 53047869 0 - 190850796 C a score=309633.000000 s hg38.chr4_KI270787v1_alt 94293 29 + 111943 tcttgagaaaaatcacttatcctccactt s panTro5.chr4 119661562 29 - 194502333 tcttgagaaaaatcacttatcctccactt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075383 29 - 195804263 tcttgagaaaaatcacttatcctccactt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504360 29 - 17550833 tcttgagaaaaatcacttatcctccactt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69376285 29 - 118206036 tcttgagaaaaataacttatcctccactt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111587025 29 - 190429646 TCTTGAGAAAAATCACTTATCCTCCACTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110756205 29 - 189454096 TCTTGAGAAAAATCACTTATCCTCCACTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13322633 29 + 26754465 TCTTGAGAAAAATCACTTATCCTCCACTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4224104 29 - 5137665 TCTTGAGAAAAATCACTTATCCTCCACTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122933515 29 - 135778131 TCTTGAGAAAAATCACTTATCCTCCACTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2046005 29 + 2427316 TCTTGAGAAAAATCACTTATCCTCCACTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1341424 29 + 1448899 TCTTGAGAAAAATCACTTATCCTCCACTT i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8213634 29 - 15139346 tcttgaggaaaatcacttgtcctccactt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7000438 29 - 7304997 TCTTGAGAAAAATCACTTATCCTCCACTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9418200 29 - 11631747 TCTTGAGAAAAATCACTTATCCTTCACTT i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48030616 22 + 63241923 tcttgaggaaatcactttatcg------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4127217 28 - 5279953 tcttgaggaaa-tcacttatcctccaatt i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e mm10.chr5 76446917 541 + 151834684 I e calJac3.chr3 53047869 0 - 190850796 C e otoGar3.GL873602 8644584 258 + 8790067 I a score=278979.000000 s hg38.chr4_KI270787v1_alt 94322 23 + 111943 ccaactcttcacttataaaatgg s panTro5.chr4 119661591 23 - 194502333 ccaactcttcacttataaaatgg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075412 23 - 195804263 ccaactcttcacttataaaatgg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504389 23 - 17550833 ccaactcttcacttataaaatgg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69376314 23 - 118206036 ccaattcttcacttataaaatgg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111587054 23 - 190429646 CCAATTCTTCACTTATAAAATGG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110756234 23 - 189454096 CCAATTCTTCACTTATAAAATGG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13322662 23 + 26754465 CCAATTCTTCACTTATAAAATGG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4224133 23 - 5137665 CCAATTCTTCACTTATAAAATGG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122933544 23 - 135778131 CCAATTCTTCACTTATAAAATGG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2046034 23 + 2427316 CCAATTCTTCACTTATAAAATGG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1341453 23 + 1448899 CCAATTCTTCACTTATAAAATGG i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8213663 23 - 15139346 ccaattattcacttataaaatgg i saiBol1.JH378162 C 0 I 5 s cebCap1.NW_016107439v1 7000467 23 - 7304997 CCAATTGTTCACTTATAAAATGG i cebCap1.NW_016107439v1 C 0 I 1 s aotNan1.NW_018493494v1 9418229 23 - 11631747 CCAATTTTTCACTTATAAAATGG i aotNan1.NW_018493494v1 C 0 I 1 s mm10.chr5 76447458 23 + 151834684 caaaatctCCATTTTTAAAATGG i mm10.chr5 I 541 I 1 s canFam3.chr13 48030638 23 + 63241923 ccaattcctcatttatcaaatgg i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4127245 23 - 5279953 ccaacccctcattcatagagtgg i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e calJac3.chr3 53047869 0 - 190850796 C e otoGar3.GL873602 8644584 258 + 8790067 I a score=1790184.000000 s hg38.chr4_KI270787v1_alt 94345 167 + 111943 -aaaaaacctgtatctac-atacttctcaaaaatgttttaggagaaa--aaatacagaatgtatAACAATGACTTGAATTC----------------TT----TACAAATAAAGTATC----------GGGA---------------------------------TTTTGCCCTACTTTACTATGTTTGACGATATGAAGGAAACTTAGAAGCAGGAAAACTCCCACCAAAA-------------ta------------- s panTro5.chr4 119661614 167 - 194502333 -aaaaaacctgtatctac-atacttctcaaaaatgttttaggagaaa--aaatacagaatgtatAACAATGACTTGAATTC----------------TT----TACAAATAAAGTATC----------GGGA---------------------------------TTTTGCCCTACTTTACTATGTTTGATGATATGAAGGAAACTTAGAAGTAGGAAAACTCCCACCAAAA-------------ta------------- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075435 167 - 195804263 -aaaaaacctgtatctac-atacttctcaaaaatgttttaggagaaa--aaatacagaatgtatAACAATGACTTGAATTC----------------TT----TACAAATAAAGTATC----------GGGA---------------------------------TTTTGCCCTACTTTACTATGTTTGATGATATGAAGGAAACTTAGAAGTAGGAAAACTCCCACCAAAA-------------ta------------- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504412 167 - 17550833 -aaaaaacctgtatctac-atacttctcaaaaatgttttaggagaaa--aaatacagaatgtatAACAATGACTTGAATTC----------------TT----TACAAATAAAGTATT----------GGGA---------------------------------TTTTGCCCTACTTTACTATGTTTGACGATATGAAGGAAACTTAGAAGCAGGAAAACTCCCACCAAAA-------------ta------------- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69376337 180 - 118206036 -aaaaaacctgtatctac-atacttctcaaaaatgttttaggaGAAA--AAATACAGAACATATAACAATGACTTGAATTA----------------TT----TACAAATAAAGTATC----------GGGA---------------------------------TTTTGCCCTACTTCGCTATGTTTGACGGTATGAAGGAAACTTAGAAGCAGGAAAACTCCCACCAAAATAACTATGCaagcta------------- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111587077 163 - 190429646 -AAAAAACCTGTATCTAT-ATACTTCTCAAAAATGTTTTAGGAGAAA------ACAGAACATATAACAATGACTTGAATTC----------------TT----TACACATAAAGTATT----------GGGA---------------------------------TTTTGCCCTATTTCACTACGTTTGACGGTATGAAGGAAACTTAGAAGCAGGAAAACTCCCACCAAAA-------------TA------------- i rheMac8.chr5 C 0 I 13 s macFas5.chr5 110756257 163 - 189454096 -AAAAAACCTGTATCTAT-ATACTTCTCAAAAATGTTTTAGGAGAAA------ACAGAACATATAACAATGACTTGAATTC----------------TT----TACACATAAAGTATT----------GGGA---------------------------------TTTTGCCCTATTTCACTACGTTTGACGGTATGAAGGAAACTTAGAAGCAGGAAAACTCCCACCAAAA-------------TA------------- i macFas5.chr5 C 0 I 13 s macNem1.NW_012012466v1 13322685 163 + 26754465 -AAAAAACCTGTATCTAT-ATACTTCTCAAAAATGTTTTAGGAGAAA------ACAGAACATATAACAATGACTTGAATTC----------------TT----TACACATAAAGTATT----------GGGA---------------------------------TTTTGCCCTATTTCACTACGTTTGACGGTATGAAGGAAACTTAGAAGCAGGAAAACTCCCACCAAAA-------------TA------------- i macNem1.NW_012012466v1 C 0 I 13 s cerAty1.NW_012001307v1 4224156 163 - 5137665 -AAAAAACCTGTATCTAT-ATACTTCTCAAAAATGTTTTAGGAGAAA------ACAGAACATATAACAATGACTTGAATTC----------------TT----TACACATAAAGTATT----------GGGA---------------------------------TTTTGCCCTATTTCACTATGTTTGACGGTATGAAGGAAACTTAGAAGCAGGAAAACTCCCACCAAAA-------------TA------------- i cerAty1.NW_012001307v1 C 0 I 13 s chlSab2.chr7 122933567 163 - 135778131 -AAAAAACCTGTATCTAT-ATACTTCTCAAAAATGTTTTAGGAGAAA------ACAGAACATATAACAATGACTTGAATTC----------------TT----TACACATAAAGTATT----------GGGA---------------------------------TTTTGCCCTATTTCACTATGTTTGACGGTATGAAGGAAACTTAGAAGCAGGAAAACTCCCACCAAAA-------------TA------------- i chlSab2.chr7 C 0 I 13 s manLeu1.NW_012104388v1 2046057 163 + 2427316 -AAAAAACCTGTATCTAT-ATACTTCTCAAAAATGTTTTAGGAGAAA------ACAGAACATATAACAATGACTTGAATTC----------------TT----TACACATAAAGTATT----------GGGA---------------------------------TTTTGCCCTATTTCACTATGTTTGACGGTATGAAGGAAACTTAGAAGCAGGAAAACTCCCACCAAAA-------------TA------------- i manLeu1.NW_012104388v1 C 0 I 12 s colAng1.NW_012119221v1 1341476 163 + 1448899 -AAAAAACCTGTATCTAT-ATACTTCTCAAAAGTATTTTAGGAGAAA------ACAGAACATATAACAATGACTTGAATTC----------------TT----TACATATAAAGTATT----------GGGA---------------------------------TTTTGCCCTACTTCACTATGTTTGACAGTATGAAGGAAACTTAGAAGCAGGAAAACTCGCACCAAAA-------------TA------------- i colAng1.NW_012119221v1 C 0 I 25 s calJac3.chr3 53047869 183 - 190850796 -aaaaaACCTGTACCTATAATACTTCTCAAAAATGTTTGAGGAGAAA--AAATACAGAACATATAACAATTACTCGAATTCTTCAAAATGAAGATATTT----TACAAATAAAGCATT----------GGGA---------------------------------TTTTTCCCTGCTTCATTATGTTTGATGGTATGAAGGAAACT-AGAAGCAGGAAAATTCCCACTGAAA-------------TA------------- i calJac3.chr3 C 0 I 13 s saiBol1.JH378162 8213691 183 - 15139346 -aaaacacctgtacctat-atgcttctcaaaaatgctttaggaGAAA--AAATACAGAACATATAACAATTACTCGAATTCTTCAAAATGAAGACATTT----TACAAATAAAGTACT----------GGGA---------------------------------TTTTTCCCTACTTCTCTGTGTTTGATGGTATGAAGGAAACTCAGAGGCAGGAAAACTGCCACTGAAA-------------TA------------- i saiBol1.JH378162 I 5 I 13 s cebCap1.NW_016107439v1 7000491 183 - 7304997 -AAAAAACCTGTACCTAT-ATACTTCTCGAACATGTTTTAGGAGAAA--AAATACAGAACATATAACAATTACTCGAATTCTTCAAAATGAAGACATTT----TACAAATAAAGTATT----------GGGA---------------------------------TTTTTCCCTGCTTCACTATGTTTGATGGTATGAAGGAAACTTAGAAGCAGGAAAACTCCCACTGAAA-------------TA------------- i cebCap1.NW_016107439v1 I 1 I 13 s aotNan1.NW_018493494v1 9418253 183 - 11631747 -AAAAAACCTGTACCTAT-ATACTTCTCAAAAATGTTTTAGGAGAAA--AAATACAGAACATATAACAATTACTCGAATTCTTCAAAATGAAGACATTT----TACAAATAAAGTATT----------GGGA---------------------------------TTTTTCCCTACTTCACTATGTTTGATGGTATAAAGGAAACTTAGAAGCAGGAAAACTCCCACTGAAA-------------TA------------- i aotNan1.NW_018493494v1 I 1 I 13 s mm10.chr5 76447482 201 + 151834684 -AATGAAACTGCATTTAC-AAACATTACTGGGATGGT----GAGAGGTCGGATCTGAAACCTCTCACAATGGCTCATTTTC----------------TTGAAACAAATATAAGGAGTT----------AGGGAAAAAAAAAAAAAAAatatatatatatatatatatatatCCCAACTCAATAAG-TTGACACTGTGAAGGAAAGTTAGCAGCAGGGTAAACTCCACCAAAA-------------TA------------- i mm10.chr5 I 1 I 13 s canFam3.chr13 48030661 174 + 63241923 -gattaacttgtatctat-atacttcataaaagtgttttaggggaaa--a---atataatatataacagtgatttgaattg----------------tT----CAAAAGGAAGGTATTTTATAAAACATGGA---------------------------------TTTTGCCCTACTTCAATAAGTTTGATCCCGTGAAGGAGAGTTAGAAGCAGAAAAGCTCTTACCAAAA-------------TA------------- i canFam3.chr13 C 0 I 5 s dasNov3.JH568349 4127268 178 - 5279953 gattaaacctgtatctac-atatttcataATAACATTATAGAGAAAA----------AAACCATAACTTTATTTTTAATTACTCAAAGGGAAGATATTT----TA----TAGAGTATT----------GCAA---------------------------------TTTTATTCTACTTAAATACGTTTGATGGTGTGGAGGAGAGTT-------TAAAAACTTCCACTGAAA-------------TGGCCATGCaagcta i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e otoGar3.GL873602 8644584 258 + 8790067 I a score=77165.000000 s hg38.chr4_KI270787v1_alt 94512 7 + 111943 acaagtt s panTro5.chr4 119661781 7 - 194502333 acaagtt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075602 7 - 195804263 acaagtt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504579 7 - 17550833 acaagtt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69376517 7 - 118206036 acaagtt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111587253 7 - 190429646 acaagtt i rheMac8.chr5 I 13 C 0 s macFas5.chr5 110756433 7 - 189454096 acaagtt i macFas5.chr5 I 13 C 0 s macNem1.NW_012012466v1 13322861 7 + 26754465 acaagtt i macNem1.NW_012012466v1 I 13 C 0 s cerAty1.NW_012001307v1 4224332 7 - 5137665 acaagtt i cerAty1.NW_012001307v1 I 13 C 0 s chlSab2.chr7 122933743 7 - 135778131 acaagtt i chlSab2.chr7 I 13 C 0 s manLeu1.NW_012104388v1 2046232 7 + 2427316 acaagtt i manLeu1.NW_012104388v1 I 12 C 0 s calJac3.chr3 53048065 7 - 190850796 accagtt i calJac3.chr3 I 13 C 0 s saiBol1.JH378162 8213887 7 - 15139346 acaagtc i saiBol1.JH378162 I 13 C 0 s cebCap1.NW_016107439v1 7000687 7 - 7304997 acaagtt i cebCap1.NW_016107439v1 I 13 C 0 s aotNan1.NW_018493494v1 9418449 7 - 11631747 acaagct i aotNan1.NW_018493494v1 I 13 C 0 s mm10.chr5 76447696 7 + 151834684 AGAAGTC i mm10.chr5 I 13 C 0 s canFam3.chr13 48030840 7 + 63241923 TCAAACt i canFam3.chr13 I 5 I 5 s dasNov3.JH568349 4127446 7 - 5279953 ataagtt i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e otoGar3.GL873602 8644584 258 + 8790067 I e colAng1.NW_012119221v1 1341639 25 + 1448899 I a score=2442718.000000 s hg38.chr4_KI270787v1_alt 94519 224 + 111943 agcctgccacagttccattaatgctgactgaaggcactagacccctgagctagaga--caaaggacattcttagctgcagcagaa------cagtaatgaga-----tttaccagcatggttgcatcagtttctcaagtcccaaatcccatagggcaata--------tggagggcccagtagagcttgcagatacagcggggtgagtcacaggaa---aggaatcc-aagcttagggaatg---tgttttt s panTro5.chr4 119661788 209 - 194502333 agcttgccacagttccattaatgctgactgaaggcactagacccctgagctagaga--caaaggacattcttagctgcagcagaa------cagtaatgaga-----tttaccagcatggttgcatcagtttctcaagtcccaaatcccatagggcaata--------tggagggcccagtagagcttgcagacacagtggggtgagtcacaggag---a----------------ggaatg---tgttttt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075609 209 - 195804263 agcttgccacagttccattaatgctgactgaaggcactagacccctgagctagaga--caaaggacattcttagctgcagcagaa------cagtaatgaga-----tttaccagcatggttgcatcagtttctcaagtcccaaatcccatagggcaata--------tggagggcccagtagggcttgcagacacagtggggtgagtcacaggag---a----------------ggaatg---tgttttt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504586 224 - 17550833 agcctgccacagttccattaatgctgactgaaggcactagacccctgagctagaga--caaaggacattcttagctgcagcagaa------cagtaatgaga-----tttaccagcatggttgcatcagtttctcaagtcccaaatcccatagggcaata--------tggagggcccagtagagcttgcagatacagcggggtgagtcacaggag---aggaatcc-aagcttagggaatg---tgttttt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69376524 227 - 118206036 agcctgccacagttccattaatgctgactgaaggcactagacccctgagctagaga--caaaggaccttcttagctgcagcagaa------tagtaatgaga-----tttaccagcatggttgcagcagtttctcaagtcccaaatcccatagggcaata--------tggagggcccagtagagcttgaaactacagtgggatgagtcacaggag---aggaaccc-aagcttagggaatgtgttgttttt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111587260 227 - 190429646 atcctgccacacttccgttaatgctgactgaaggcactagaccccggagctagaga--caaaggacattcttagctgcagcagaa------cagtaatgaga-----tttaccagcgtggttgcaacagtttctcaagtcccaaatcccgtagggcaata--------tggaagacccagtagagctcgcaaatacagtggggtgagtcacaggag---aggaaccc-gagcttagggaatgtgttgttgtt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110756440 227 - 189454096 atcctgccacacttccgttaatgctgactgaaggcactagaccccggagctagaga--caaaggacattcttagctgcagcagaa------cagtaatgaga-----tttaccagcgtggttgcaacagtttctcaagtcccaaatcccgtagggcaata--------tggaagacccagtagagctcgcaaatacagtggggtgagtcacaggag---aggaaccc-gagcttagggaatgtgttgttgtt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13322868 227 + 26754465 atcctgccacacttccgttaatgctgactgaaggcactagaccccggggctagaga--caaaggacattcttagctgcagcagaa------cagtaatgaga-----tttaccagcgtggttgcaacagtttctcaagtcccaaatcccatagggcaata--------tggaagacccagtagagctcgcaaatacagtggggtgagtcacaggag---aggaaccc-gagcttagggaatgtgttgttgtt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4224339 227 - 5137665 agcctgccacacttccgttaatgctgactgaaggcactagacccctgagctagaga--caaaggacattcttagctgcagcagaa------cagtaatgaga-----tttaccagcgtggttgcaacagtttctcaagtcccaaatcccgtagggcaata--------tggaagacccagtagagctcgcaaatacagtggggtgagtcacaggag---aggaaccc-gagcttaggaaatgtgttgttgtt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122933750 227 - 135778131 agcctgccacacttctgttaatgctgactgaaggcactagacccctgagctagaga--caaaggacattcttagctgcagcagaa------cagtaatgaga-----tttaccagcgtggttgcaacagtttctcaagtcccaaatcccgtagggcaata--------tggaagacccagtagagctcgcaaatacagtggggtgagtcacaggag---aggaaccc-aagcttagggaatgtgttgttgtt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2046239 227 + 2427316 agcctgccacacttccattaatgctgactgaaggcactagacccctgagctagaga--caaaggacattcttagctgcagcagaa------cagtaatgaga-----tttaccagcgtggttgcaacagtttctcaagtcccaaatcccgtagggcaata--------tggaagacccagtagagctcgcaaatacagtggggtgagtcacaggag---aggaaccc-gagcttagggaatgtgttgttgtt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1341664 227 + 1448899 agcctgccacacttccattaatgctgactgaaggcactagacccttgagctagaga--caaaggacattcttagctgcagcagaa------cagtaatgaga-----tttaccagcgtggttgcaacagtttctcaagtcccaaatcccgtagggcaata--------tggaggacccagtagagctcgcaaatacagtggagtgagtcacaggag---aggaaccc-gagcttagggaatgtgctgttgtt i colAng1.NW_012119221v1 I 25 C 0 s calJac3.chr3 53048072 226 - 190850796 agcctgccacagttccattcatgctgacagaaagcactagagccctgagctagaga--caaaggacattcttagccgcagaagaa------cagtaatgaga------gtaccagcacggttgcatcagttcctcaagttccaaatcccacagggcaata--------gggagggcccagtagagcttgcaaatacagtggggtgagtcacaaaag---agaaaccc-aagcttagggaatgtgttgctttt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8213894 226 - 15139346 agcctgccacagttccactcatgctgacagaaggcactggacccctgagctagaga--caaaggacattcttagccacagcagaa------cagtaatgaga------gtaccagcatggttgcatcagttccttgagttccaaatcccacagggcaata--------gggagggccgaatagaacttgcaaatgcagtggggtgactcacaggag---aggaatcc-aagcttaggggacgtgttgctttt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7000694 226 - 7304997 agcctgccacagttccattcatgcggacagaaggcactagacccctgagctagaga--caaaggacattcttagccacagcagta------cagaaacgaaa------gtaccagcatggttgcatcagttcctcaagttccaaatcccagagggcaata--------gggagggccgagtagagcttgcaaatgcagtggggtgagtcacaggag---aggaaccc-aagtctaggggacgtgttgctttt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9418456 226 - 11631747 agcctgccacagttccactcatgctgacagaaggcactagacccctgagctagaga--caaaggacattcttagccacagcagaa------cagtaatgaga------gtaccagcacggttgcatcagttcctcaagttccacatcccacagggcaata--------gggagggccgagtagagcttgcaaatgcagtggggtgagtcacaggag---aggaaccc-aagcttagggaacgtgttgctttt i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76447703 225 + 151834684 AGTCCACCCTTGCTCCATGCATGAAAGAAGAAAGCACCGGGCTTCTAAAGGAGAAA--CAAAGGACCGTGTCAGCCACGGGAGGAGTGGGTGCGTGAGCAGAACATGCATATAAGCATGATCGCATTGGTT---------CCGTGTCCCATGAGGCCAAAGAGGGTGCGGGGGGAGGTGGTGGAGCACG----TGCAGCGGAGGTAGTCTTCCGGGCTCAGGAGTCT-GATGATAGGCAGT----------- i mm10.chr5 C 0 C 0 s canFam3.chr13 48030852 216 + 63241923 agcctgcca--gttttatggatgctgacagaagatatgagactcttgagtcagaga--caaaggatgttactagttacagcaaaag-----gagtaacagga------gtagcaatatagttgtatcagtg--------cccaagtcccacagggaaatg--------tggagggcctaatggagcctgcatatgcagaggggtggttcacagagg---a-gaacct-aagcttagggaatctgctgctttt i canFam3.chr13 I 5 I 12 s dasNov3.JH568349 4127453 222 - 5279953 agccaaccacgattccatgaaggctggcagaagacatgagactcctgggtcagagggtcaaagggctttattagttgcagcaaaat-----cagcatcagga------gtatccgaatgttcacacaagttcc-------ccaagtcccacacggcaata--------tgcagatccca-tggaacctgcacatgttgtgggatgagccacaggag---aggaaccctgagcttaaggtatccactgttttt i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I e otoGar3.GL873602 8644584 258 + 8790067 I a score=2853876.000000 s hg38.chr4_KI270787v1_alt 94743 245 + 111943 -----------aagcaagcctattctttgtccggaaaaagcccaagtgcagtgtaaaaactgcaatgcaccat----catctcagaattaccaggtacatgagcaatcccgagaagtgacccaggt---ataaca---gtcaaagccctgggatgttgg-caaatg--cagcaagttgtgtaggagcccaagaggcccatggtggactgtatctcagcaGACAGTGCATAACAATGAAAATGA-------ATACAATTGT-TTTAAAAGGTTATGCA s panTro5.chr4 119661997 245 - 194502333 -----------aagcaagcctattctttgtccggaaaaagcccaagtacagtgtaaaaactgcaatgcaccat----catctcagaattaccaggtacatgagcaatcccgagaagtgacccaggt---ataaca---gtcaaagccctgggatgttgg-caaatg--cagcaagttgtgtaggagcccaagaggcccatggtggactgtatctcagcaGACAGGGCATAACAATGAAAATGA-------ATACAATTGT-TTTAAAAGGTTATGCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121075818 245 - 195804263 -----------aagcaagcctattctttgtccggaaaaagcccaagtacagtgtaaaaactgcaatgcaccat----catctcagaattaccaggtacatgagcaatcccgagaagtgacccaggt---ataaca---gtcaaagccctgggatgttgg-caaatg--cagcaagttgtgtaggagcccaagaggcccatggtggactgtatctcagcaGACAGGGCATAACAATGAAAATGA-------ATACAATTGT-TTTAAAAGGTTATGCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4504810 245 - 17550833 -----------aagcaagcctattctttgtctggaaaaagcccaagtgcagtgtaaaaactgcaatgcaccat----catctcagaattaccaggtacatgagcaatcctgagaagtgacccaggt---ataaca---gtcaaagccctgggatgttgg-caaatg--cagcaagttgtgtaggagcccaagaggcccatggtggactgtatctcagcaGACAGGGCATAACAATGAAAATGA-------ATACAATTGT-TTTAAAAGGTTATGCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69376751 241 - 118206036 -----------aagcaagcctattcttt----ggaaaaagcccaggtgcagtgtaaaagctgcaatgcaccat----catctcagaattaccaggtacatgagcaatcccaagaagtgacccaggt---acaaca---gtcaaagccctgggatgttgg-caaaca--cagcaagttttgtaggagcccaagaggcccatggtggactgtatctcagcaTACAGTGCATAACAATGAAAATGA-------ACACAATTGT-TTTAAAAGGCTATGCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111587487 245 - 190429646 -----------aagcaagcctattctttgtctggaaaaagcccaggtgcagtgtaaaaactgcaatgcaccat----catctcagaattaccaggtacatgagcaatcctgagaagtgacccaggg---acaaca---gtcaaagccctgggatgttgg-caaacg--cagcaagttgtgtaggagccaaagaggcccatggtggactgtatctcagcaTATAGGGCATAACAATGAAAATGA-------ATACAATTGT-TTTAAAAGACTATACG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110756667 245 - 189454096 -----------aagcaagcctattctttgtctggaaaaagcccaggtgcagtgtaaaaactgcaatgcaccat----catctcagaattaccaggtacatgagcaatcctgagaagtgacccaggg---acaaca---gtcaaagccctgggatgttgg-caaacg--cagcaagttgtgtaggagccaaagaggcccatggtggactgtatctcagcaTATAGGGCATAACAATGAAAATGA-------ATACAATTGT-TTTAAAAGACTATACG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13323095 245 + 26754465 -----------aagcaagcctattctttgtctggaaaaagcccaggtgcagtgtaaaaactgcaatgcaacat----catctcagaattaccaggtacatgagcaatcctgagaagtgacccaggg---acaaca---gtcaaagccctgggatgttgg-caaacg--cagcaagttgtgtaggagccaaagaggcccatggtggactgtatctcagcaTATAGGGCATAACAATGAAAATGA-------ATACAATTGT-TTTAAAAGACTATATG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4224566 245 - 5137665 -----------aagcaagcctattctttgtctggaaaaagcccaggtgcagtgtaaaaactgcaatgcaccat----catctcagaattaccaggtacatgagcaattctgagaagtgacccaggg---acaaca---gtcaaagccctgggatgttgg-caaaag--cagcaagttgtgtaggagccaaagaggcctatggtggactgtatctcagcaTACAGGGCATAACAATGAAAATGA-------ATACAATTGT-TTTAAAAGGCTATACG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122933977 245 - 135778131 -----------aagcaagcctattctttgtctggaaaaagcccaggtgcggtgtaaaaactgcaatgcaccat----catctcagaattaccaggtacataagcaatcctgagaagtggcccaggg---acaaca---ttcaaagccctgggatgttgg-caaacg--cagcaagttgtgtaggagccaaagaggcccatggtggactgtatctcagcaTACAGGGCATAACAATGAAAATGA-------ATACAATTGT-TTTAAAAGGCTATACG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2046466 245 + 2427316 -----------aagcaagcctattctttgtctggaaaaagcccaggtgcagtgtaaaaactgcaatgcaccat----catctcagaattaccaggtacatgagcaatcctgagaagtgacccaggg---acaaca---gtcaaagccctgggatgttgg-caaacg--cagcaagttgtgtaggagccaaagaggcctatggtggactgtatctcagcaTACGGGACATAACAATGAAAATGA-------ATACAATTGT-TTTAAAAGGCTATATG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1341891 245 + 1448899 -----------aagcaagcctattctttgtctggaaaaagcccaggtgcagtgtaaaaactgcaatgcaccat----catctcagaattaccaggtacatgagcaatcctgagaagtgacccaggg---acaaca---gtcaaagccctgggatgttgg-caaacg--cagcaagttgtgtaggagccaaagaggtccgtggtggactgtatctcagcaTACAGGGCATAACAATGAAAATGA-------ATACAATTGT-TTTAAAAGGCTATACG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53048298 245 - 190850796 -----------aagtaagcctattctttgtctggaaaaagccca-gtgcagtgt-aaaactgcattgcaccat----catctcaggattatcaggtacatgagcaacccagagaagtgacccaggt---aaaaca---gtcaaatccctgtgatgttgg-cagacaatttgcaagtcgtggaagagcgcaagaggcccctggtggactgtatctcaacaTACAGGGCATAACAATGAAAAGGA-------ATAAAATCTT-CTTTAAAGGCTATATG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8214120 236 - 15139346 -----------aagcaatcctgttctttgtctggaaaaagcccaggtgcagtgtaaaaactgtaatgcaccat----catctcaggattatcaggtacatgagcaacccagagaagtgacccaggt---aaaaca---gtcaaacccct---------g-cagaca--ccacaagtcgcggaagagcccaagaggcccctggtggacagtatctcaacCTACAGGGCATAATAAGGAAAATGA-------ATAAAATCTT-TTTTAAAGCCTATATC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7000920 232 - 7304997 -----------aagcaagcctattctttgTCTGGAAAAAGCCCAGGTGCAGTGCAAAAACTGCAATGCACCAT----CATGTCAGGATTATCAGGTACATGAGCAACCCAGAGAAGTGACCCAGGT---AAAA-------CAAACCCCT---------G-CAGACA--CCGCAAGTCGTGGAAGAACCCAAGAGGCCCCTGGTGGACAGTATCTCAACTTACAGGGCATAACGAGGAAAATGA-------ATAAAATCTT-TTTTAAAGGCTATCTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9418682 245 - 11631747 -----------aagcaagcctattctttgtctggaaaaagcccaggtgcagtgtaaaaactgcattgcaccat----catctcaggattatcaggtacatgagcaatccagagaagtgacccaggt---aaaaca---gtcaaacccctgcgatgttgg-cagaca--ccgcaagtcgtggaagagtgcaagaggcctctggtggactgtatctcaacaTACAGGGCATAACAATGAAAATGA-------ATAAAATCTT-TTTTAAAGGCTATACG i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8644842 211 + 8790067 -----------AAGCAAGTGTATTCCTTGTTTGGGAGGAGCCCAGGTGCAGTGTAAGAACTGAAATGCACTAT----TTTTTCAGGATTGC------------CAATTTTGAGAAGTTATCCAGAT---AAAAC------CAAAGCCCTGGGATTTTAA-CACATG--CAGCA-------------------GGGCCCATCTCAGACTGTGTCTCAATACACAGTGAATAATAATGCAAATAA-------ATAGAATTTT-AAAATAAAGTTACATG i otoGar3.GL873602 I 258 C 0 s mm10.chr5 76447928 222 + 151834684 -----------AAGCAAGGGTGTTT----ACTGGAAGGAGCCCAGCCACGGTGAAAACATCACAGTGCGCTGT----CATCTCTGGATTATCACGTGCAT---------------GTGGCCCAGGTGAAAGAATG---GCCAATGCCCTGGGACTTTAGTCACATG--TAGCAAAAAGTTTAGGCACACAGGAGCCGCAT----GAGTGTACTTCAGCACGCGTGCCATAATAATGCAAAGGA-------ATGGGCTGGA-TGAGTAGGATCA---- i mm10.chr5 C 0 C 0 s canFam3.chr13 48031080 244 + 63241923 -----------aagcaagtatgtt---tgtctggaagaagaccaggtgtaatacaaaaactacaatgtattat----cttctcaggattgccagctatgtaatcaatcctgagaagtggcccaggttaaagaaca---gccaaaaccttgggattgtgg-cacatt--cagcaagacacataggagcgcaagaggctcatatctgattgtatc-caacaTAAAGGGCATAATGATACAAATGA-------ATAAAATTTC-AATGTAAGGTTACATG i canFam3.chr13 I 12 C 0 s dasNov3.JH568349 4127675 263 - 5279953 atagaagcagttagcagtcctgttctctgtccagatggagatcaggcacagtgcaaaaattgca-tgcattacttcacatctcagggttgccaggtccatgaacaatcctgagaagtggctcaagt---aaaagaatcgtcaaagccttgtgattctag-cacact--cagca--ttatgtaagtgcacaaaagactcatggcagaattTAGTCTAACATACAGGTCATAACAATATAGATTATGCAATTATGTAATTTTATTTTAAAAATT----- i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1893295 657 + 4188776 I e micMur3.chrUn_NW_017968520v1 1804337 825 + 3286835 I a score=2295376.000000 s hg38.chr4_KI270787v1_alt 94988 141 + 111943 GTTACTTAAAGAACTATGATTCTAGTTCCAAAGGAAAAAG-ATG----GAGGAAATTTTACCATGCTA---TTTTCGCTGCCTT-------TGGAAAGAGGATCAAAAGATTAAAATGTGGAGACTACTGAC-TTCCCATTGTTTATGTTCACAGAT s panTro5.chr4 119662242 141 - 194502333 GTTACTTAAAGAACTATGATTCTAGTTCCAAAGGAAAAAG-ATG----GAGGAAATTTTACCATGCTA---TTTTCGCTGCCTT-------TGGAAAGAGGATCAAAAGATTAAAATGTGGAGACTACTGAC-TTTCCATTGTTTATGTTCACAGAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121076063 141 - 195804263 GTTACTTAAAGAACTATGATTCTAGTTCCAAAGGAAAAAG-ATG----GAGGAAATTTTACCATGCTA---TTTTCGCTGCTTT-------TGGAAAGAGGATCAAAAGATTAAAATGTGGAGACTACTGAC-TTTCCATTGTTTATGTTCACAGAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4505055 141 - 17550833 GTTACTTAAAGAACTATGATTCTAGTTCCAAAGGAAAAAG-ATG----GAGGAAATTTTACCATGCTA---TTTTCACTGCCTT-------TGGAAAGAGGATCAAAAGATTAAAATGTGGAGACTACTGAC-TTTCCATTGTTTATGTTCACAGAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69376992 140 - 118206036 GTTACTTAAAGAACTATGATTCTAGTTCCAAAGGAAAAAG-ATG----GAGGAAATTTTACCATGCTA---TTTTCACTGCCTT-------TGGAAAGAGAATCAAAAGATTAAAATGCGGAGACTACTAAC-TTTCCATTGTTTATGTTAGCAGA- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111587732 145 - 190429646 GTTACTTAAAGAACTATGATTCTAGTTCCAAAGGAAAAAG-ATGCAAGGAGGAAATTTTACCATGCTA---TTTTCACTGCCTT-------TGGAAAGAGGATCAAAAGATTAAAATGTGGAGACTACTGAC-TTTCCACTGTGTATGTTAACAGAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110756912 145 - 189454096 GTTACTTAAAGAACTATGATTCTAGTTCCAAAGGAAAAAG-ATGCAAGGAGGAAATTTTACCATGCTA---TTTTCACTGCCTT-------TGGAAAGAGGATCAAAAGATTAAAATGTGGAGACTACTGAC-TTTCCACTGTGTATGTTAACAGAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13323340 145 + 26754465 GTTACTTAAAGAACTATGATTCTAGTTCCAAAGGAAAAAG-ATGCAAGGAGGAAATTTTACCATGCTA---TTTTCACTGCCTT-------TGGAAAGAGGATCAAAAGATTAAAATGTGGAGACTACTGAC-TTTCCACTGTGTATGTTAACAGAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4224811 145 - 5137665 GTTACTTAAAGAACTATGATTCTAGTTCCAAAGGAAAAAA-ATGCAAAGAGGAAATTTTACCATGCTA---TTTTCACTGCCTT-------TGGAAAGAGAATCAAAAGATTAAAATGTGGAGACTACTGAC-TTTCCACTGTGTATGTTAACAGAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122934222 145 - 135778131 GTTACTTAAAGAACTATGATTCTAGTTCCAAAGGAAAAAG-ATGCAAGGAGGAAATTTTACCATGCTA---TTTTCACTGCCTT-------TGGAAAGAGGATCAAAAGATTAAAATGTGGAGACTACTGAC-TTTCCACTGTGAATGTTAACAGAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2046711 145 + 2427316 GTTACTTAAAGAACTATGATTCTAGTTCCAAAGGAAAAAA-ATGCAAGGAGGAAATTTTACCATGCTG---TTTTCACTGCCTT-------TGGAAAGAGGATCAAAAGATTAAAATGTGGAGACTGCTGAC-TTTCCACTGTGTATGTTAACAGAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1342136 145 + 1448899 GTTACTTAAAGAACTATGATTCTAGTTTCAAAGGAAAAAG-ATGCAAGGAGGAAATTTTACCATGCTA---TTTTCACTGCCTT-------TGGAAAGAGGATCAAAAGATTAAAATGTGGAGACTACTGAC-TTTCCATTGTGTATGTTAACAGAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53048543 145 - 190850796 GTTACTTAAAGAATGATGATTCTAGTTCCAAAGGAAAAAG-ATGCGAGGAGGACATTTTACCATGCTA---TTGTCACTGCCTT-------TGCAAAGAGGATCAAAAGATTAAAATGTGGAGACGACTGAC-TTTCGATTGTTTATGTTAACAGAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8214356 146 - 15139346 GTTACTTAAAGAACTATGATTCTAGTTCCAAAGGAAAAAG-AGGCGAGGAGGAAATTTTGCAATGCTA---TTTTCACTGCCTT-------TGCAAAGAGGATCAAAAGATTCAAATGTGGTGACTACTGACTTTTCCATTGTTTATGTTAACAGAT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7001152 145 - 7304997 GTTACTTAAAGAACTATGATTCTAGTTCCAAAGGAAAAAG-ATGCGAGGGGGAAATTTTGCCATGCTA---TTTTCACTGCCTT-------TGCAAAGAGGATCAAAAGATTAAAATGTGGAGACTACTGAC-TTTCCATTGTTTATGTTAACAGAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9418927 145 - 11631747 GTTACTTAAAGAACTATGATTCTAGTTCCAAAGGAAAAAT-ATGCGAGGAGGAAATTTTGCCATGCTA---TTTTCACTGCCTT-------TGCAAAGAGGATCAAAAGATTAAAATGTGGAGACTACTGAC-TTTCGATTGTTCATGTTAACAGAT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1805162 145 + 3286835 GTTACTTAAAGAATTATGATTTTAGTTCCAAAAGAAAAAG-ATGCAAGGAGGACATTTTCTAAGGCTA---TTTTCACTGCCTT-------TGGAAAGAGGATCACAAGATTAACATAGGAAGACTTCTGAC-TTTCCAATGTTCATGTTAACAGAT i micMur3.chrUn_NW_017968520v1 I 825 C 0 s proCoq1.NW_012140747v1 1893952 145 + 4188776 GTTACTTAAAGAATTATGATTTTAGTTCCAAGAGAAAAAG-ATGCAAGGAGGAAATTTTACAAGGCTA---TTTTCACTGCCTT-------TGGAAAGAGGATCACGAGATTAACATGTGAAGACTCCTGAC-TTCCCATTGTTTATGTTAATAGAT i proCoq1.NW_012140747v1 I 657 C 0 s otoGar3.GL873602 8645053 145 + 8790067 GCTACTTAAAGAACTATGATTCTAGTTTCAAATGAAAAAATATGTAACAAGGAAATTTTATAAGGC-A---TTTTCACTGCCTT-------TCAAAAAAAGATCATGACATTAAAAAGTGAAGACTCCCGAC-TTTTCATTGTTTATGTTAACAGAT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76448150 132 + 151834684 -----------AGTTATGTGGCTCATTCCAAAGGAGAAC--ATATAAAATCGAAAGGTTACAGTGTCA--TTTTTCACTGACTT-------TACCCAGAAAATCCCAGGAATAAAATATGAAGACG--CGGC-TTCTCAGTGTCAAATTTTAAAAAT i mm10.chr5 C 0 I 805 s canFam3.chr13 48031324 148 + 63241923 TTTATTTAAAGAATTACGATTCTAGTTCCAAAGGAAGAAA-ATGCAAGGAGGAAATTTTACCATGTTATATTTTTCACTGTCTT-------TGGAAAGAAAACCACAAGATTAAAATGTGAAGACTCCTGGT-TTTCTAGTGTTTATGTTAATAGAT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4127938 145 - 5279953 -----CTAAAGAACTTTGGTTCTAGTCCCAAAGGAAGAAA-ATGAAAAGGGGAAAATTTA-AATGCTG---TTTTCTCTGCTCTTCTCTTATTGGAAAAAGATCAC-AGATAGAAATGCAAAGACTCCTGAC-TTTCCATTATTTATGTTAATAGAT i dasNov3.JH568349 C 0 C 0 a score=119056.000000 s hg38.chr4_KI270787v1_alt 95129 10 + 111943 TCCAATTTTT s panTro5.chr4 119662383 10 - 194502333 TCCAATTTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121076204 10 - 195804263 TCCAATTTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4505196 10 - 17550833 TCCAATTTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69377132 10 - 118206036 TCCAATTTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111587877 10 - 190429646 TCCAATTTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110757057 10 - 189454096 TCCAATTTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13323485 10 + 26754465 TCCAATTTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4224956 10 - 5137665 TCCAATTTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122934367 10 - 135778131 TCCAATTTTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2046856 10 + 2427316 TCCAATTTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1342281 10 + 1448899 TCCAATTTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53048688 1 - 190850796 T--------- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8214502 10 - 15139346 TCCAGTTTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7001297 10 - 7304997 TCCAGTTTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9419072 10 - 11631747 TCCAGTTTTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1805307 10 + 3286835 TCCAGTTTTT i micMur3.chrUn_NW_017968520v1 C 0 I 410 s proCoq1.NW_012140747v1 1894097 10 + 4188776 TCCAATTTTT i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8645198 10 + 8790067 TCCATTTTCA i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48031472 9 + 63241923 AACAATTTG- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4128083 10 - 5279953 ATCAATTTTT i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76448282 805 + 151834684 I a score=158556.000000 s hg38.chr4_KI270787v1_alt 95139 13 + 111943 TGAAAACCACTAC s panTro5.chr4 119662393 13 - 194502333 TGAAAACCACTAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121076214 13 - 195804263 TGAAAACCACTAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4505206 13 - 17550833 TGAAAACCACTAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69377142 13 - 118206036 TAAAAACCACTAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111587887 13 - 190429646 TAAAAACCACTAC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110757067 13 - 189454096 TAAAAACCACTAC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13323495 13 + 26754465 TAAAAACCACTAC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4224966 13 - 5137665 AAAAAACCACTAC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122934377 13 - 135778131 AAAAAACCACTAC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2046866 13 + 2427316 TAAAAACCATTAC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1342291 13 + 1448899 TAAAAACCACTAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53048689 7 - 190850796 ------CCATGAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8214512 13 - 15139346 TAAAAACCATGAC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7001307 13 - 7304997 TAAAAACCATGAC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9419082 13 - 11631747 TAAAAACCATGAC i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1894107 12 + 4188776 -AAAAATCACTTC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8645208 13 + 8790067 AAAAAATCACTAC i otoGar3.GL873602 C 0 C 0 s canFam3.chr13 48031481 12 + 63241923 -AAAAACCACTAC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4128093 12 - 5279953 -AAAAGCCACTAT i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1805317 410 + 3286835 I e mm10.chr5 76448282 805 + 151834684 I a score=231608.000000 s hg38.chr4_KI270787v1_alt 95152 20 + 111943 TTGAAGCCCATAGACTTGAA s panTro5.chr4 119662406 20 - 194502333 TTGAAGCCCATAGTCTTGAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121076227 20 - 195804263 TTGAAGCCCATAGTCTTGAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4505219 20 - 17550833 TTGAAGCCCATAGACTTGAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69377155 20 - 118206036 TTGAAGCCTGTAGACTTGAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111587900 19 - 190429646 TTGAAGTCCATAGACTTG-G i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110757080 19 - 189454096 TTGAAGTCCATAGACTTG-G i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13323508 19 + 26754465 TTGAAGTCCATAGACTTG-G i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4224979 19 - 5137665 TTGAAGTCCATAGACTTG-G i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122934390 19 - 135778131 TTGAAGTCCATAGACTTG-G i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2046879 19 + 2427316 TTGAAGTCCATAGACTTG-G i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1342304 19 + 1448899 TTGAAGTCCATAGACTTG-G i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53048696 20 - 190850796 TTGAAGTCCATAGACTTGAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8214525 20 - 15139346 TTGAAGTCCATAGACTTGAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7001320 20 - 7304997 TTGAAGTCCATAGACTTGAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9419095 20 - 11631747 TTGAAGTCCATAGACTTGAA i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1894119 20 + 4188776 TTGAACTCCACAAACTTGAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8645221 18 + 8790067 TTGAACTCCATAGACTTA-- i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76449087 20 + 151834684 TTAAACTCCATGGGATTGAA i mm10.chr5 I 805 I 1 s canFam3.chr13 48031493 19 + 63241923 TTGCA-TCTGCAGATTGGAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4128105 20 - 5279953 CTGAACTCCTTAGACTTGAA i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1805317 410 + 3286835 I a score=2909030.000000 s hg38.chr4_KI270787v1_alt 95172 195 + 111943 AAAAATTATTAAAAATTGCTGAAGTAACTGCCACATCATGTAAATATCCTCAAAATAATGGTTGGTTTCTATGAACTAAGAAGAAAAGAATAGTCCTTTGGACCACTGTGGAATCACGAGAATGAGGCCAATAAG----ATGTGATAGAAAAAGAAGG-AGAA-GAGGGCATGTAGAAAGGAAAGGTTACAGAGGGAAGAA s panTro5.chr4 119662426 195 - 194502333 AAAAATTATTAAAAATTGCTGAAGTAACTGCCACATCATGTAAATATCCTCAAAATAATGGTTGGTTTCTATGAACTAAGAAGAAAAGAATAGTCCTTTGGACCACTGTGGAATCACAAGAAGGAGGCCAATAAG----ATGTGATAGAAAAAGAAGG-AGAA-GAGGGCATGTAGAAAGGAAAGGTTACAGAGGGAAGAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121076247 195 - 195804263 AAAAATTATTAAAAATTGCTGAAGTAACTGCCACATCATGTAAATATCCTCAAAATAATGGTTGGTTTCTATGAACTAAGAAGAAAAGAATAGTCCTTTGGACCACTGTGGAATCACGAGAAGGAGGCCAATAAG----ATGTGATAGAAAAAGAAGG-AGAA-GAGGGCATGTAGAAAGGAAAGGTTACAGAGGGAAGAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4505239 195 - 17550833 AAAAATTATTAAAAATTGCTGAAGTAACTGCCACATCATGTAAATATCCTCAAAATAATGGTTGGTTTCTATGAACTAAGAAGAAAAGAATAGTCCTTTGGACCACTGTGGAATCACGAGAAGGAGGCCAATAAG----ATGTGATAGAAAAAGAAGG-AGAA-GAGGGCATGTAGAAAGGAAAGGTTACAGAGGGAAGAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69377175 195 - 118206036 AAAAATTATTAAAAATTGCTGAAGTAACTGCCACATCATGCAAATATCCTCAAAATAATGGTTGGTTTCTATGAACTAAGAAGAAAAGAATAGTCCTTTGGACCACTGTGGAATCATGAGAAGGAGGCCAATAAG----ATGTTATAGAAAAGGAAGG-AGAA-GAGGGCATGTAGAAAGGAAAGGTTACAGAGGGAAGAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111587919 195 - 190429646 AAAAATTATTAAAAATTGCTGAAGTAACTGCCACATCATGTAAATATCCTCAAAATAGTGATTGTTTTTTATGAACTAAGAAGAAAAGAATAGTCCTTTGGACCACTGTGCAATCATGAGAAGGAGGCCAATAAG----ATGTGATAGAAAAGGAAGG-AGAA-GAGGGCATGTAGAAAGGAAAGGTTACAGAGGGAAGAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110757099 195 - 189454096 AAAAATTATTAAAAATTGCTGAAGTAACTGCCACATCATGTAAATATCCTCAAAATAGTGATTGTTTTTTATGAACTAAGAAGAAAAGAATAGTCCTTTGGACCACTGTGCAATCATGAGAAGGAGGCCAATAAG----ATGTGATAGAAAAGGAAGG-AGAA-GAGGGCATGTAGAAAGGAAAGGTTACAGAGGGAAGAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13323527 195 + 26754465 AAAAATTATTAAAAATTGCTGAAGTAACTGCCACATCATGTAAATATCCTCAAAATAGTGATTGTTTTTTATGAACTAAGAAGAAAAGAATAGTCCTTTGGACCACTGTGCAATCATGAGAAGGAGGCCAATAAG----ATGTGATAGAAAAGGAAGG-AGAA-GAGGGCATGTAGAAAGGAAAGGTTACAGAGGGAAGAA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4224998 195 - 5137665 AAAAATTATTAAAAATTGCTGAAGTAACTGCCACATCATGTAAATATCCTCAAAATAGTGATTGTTTTTTACGAACTAAGAAGAAAAGAAGAGTCCTTTGGACCACTATGCAATCATGAGAAGGAGGCCAATAAG----ATGTGATAGAAAAGGAAGG-AGAA-GAGGGCATGTAGAAAGGAAAGGTTACAGAGGGAAGAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122934409 195 - 135778131 AAAAATTATTAACAATTACTGAAGTCACTGCCACATCATGTAAATATCCTTAAAATAGTGATTGTTTTTTATGAACTAAGAAGAAAAGAATAGTCCTTTGGACCACTGTGCAATCATGAGAAGGAGGCCAATAAG----ATGTGATAGAAAAGGAAGG-AGAA-GAGGGCATGTAGAAAGGAAAGGTTACAGAGGGAAGAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2046898 195 + 2427316 AAAAATTATTAAAAATTGCTGAAGTAACTGCCACATCATGTAAATATCCTCAAAATAGTGATTGTTTTTTACGAACTAAGAAGAAAAGAATAGTCCTTTGGACCACTGTGCAATCATGAGAAGGAGGCCAATAAG----ATGTGATAGAAAAGGAAGG-AGAA-GAGGGCATGTAGAAAGGAAAGGTTACAGAGGGAAGAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1342323 195 + 1448899 AAAAATTATTAAAAATTGCTGAAGTAACTGCCACATCATGTAAATATCCTCAAAATAGTGATTGTTTTTTATGAATTAAGAAGAAAAGAATAGTCCTTTGGACCACTGTGCAATCATGAGAAGGAGGCCAATAAG----ATGTGATAGAAAAGGAAGG-AGAA-GAGGGCATGTAAAAAGGAAAGGTTACAGAGGGAAGAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53048716 196 - 190850796 AAAAATTATTAAAAATTGCTGAAGTAACTGCCACATCCTGAAAACATCCTCAAAATAGTGGCTGGTTTCTATGAACTAAGAAGAAAAGAATAGTCCTTTGGATCACTGTGGAATCACGAG---GAGGCCGACAAGAAGTATGTGATAGAAAAGGAAGG-AGAA-GAGGGTATGTGGAGAGGAGAGGTTACAGAGGGAAGAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8214545 196 - 15139346 AAAAATTATTAAAAATTGCTGAAGTAACTGCCACATCCTGAAAATATCCTCAAAATAATGGTTGGTTTCTATGAACGAAGAAGAAAAGAATAGTCCTTTGGACCACTGTGGAATCATGAG---GCGGCCAATCAGAAGTATGTGATAGAAAAGGAAGG-AGAA-GAGGGCATGTGAAAAGGAGAGGTTACAGAGGGAAGAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7001340 195 - 7304997 AAAAATTATTAAAAATTGCTGAAGTAACTGCCACATCCTGAAAATATCCTCAAAATAATGGTTGGTTTCTATGAACTAAGAAGAAAAGAATAGTCCTTTGGACCACTGTAGAATCATGAG---GAGGCCAATAAGAAGTATGTGATAGAAAAGGAAGG-AGAA-GA-GGCATGTGAAAAGGAGAGGTTACAGAGGGAAGAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9419115 196 - 11631747 AAAAATTACTAAAAATTGCTAAAGTAACTGCCatatcctgaaaatatcctgaaaataATGGTTGGTTTCTATGAACTAAGAAGAAAAGAATAGTCCTTTGGACCACTGTGGAATCATGAG---GAGGCCAATAAGAAGTATGTGATAGAAAAGGAAGG-AGAA-GAGGGCGTGTGAAAAGGAGAGGTTACAGAGGGAAGAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1805727 193 + 3286835 AAAAATTATTAAAAGTTGTTGCAGTAACTGTCACAGCACAGAAATATTCTCAAGATAATGGTTGGTTTCTCTGAAC------TAAGAGAATAGTCTAATGGACCACTATAGAATCATGAGAATGAGGCTAATAATAAGTATGTGATAGAAAAGGAAGA-AGGA-GAGGGTATGTAAGGAGGAGAAGGGACAGAAGGAAAAA i micMur3.chrUn_NW_017968520v1 I 410 I 47 s proCoq1.NW_012140747v1 1894139 197 + 4188776 --AAATTATTAAAAATTGCTGCAGTAACTGCCACATCACAGAAATATCCTCAAGATAATGGTTGGTTTCTATGAATGAAGAATAAGAGAATAGTCTACTGGACCACTGTGGAATCATGAGAATGAGGCCAATAATAATTATGTGATGGAAAAGGAAGG-AGGA-GAGGGGATGTAGGGAGGAGAAGGGAAACAGGAAAGAG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8645239 194 + 8790067 AAAAATCATTACAATTTTCTGAAGTAACTGCCATATCACAGGAATATTCTCAAGTTAATGGTTGGTTTCTATGAACTAAGAATAAGTGTACAGACTACTGGACCACTGTGAAATCATGAGAATGAGGCCAGTAATAAGTTCATGATGGAAA---AAGA-AGAA-GAGGATATGCAGGGAAGAAAAAG--CCAGAGGAAGAG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76449108 180 + 151834684 ATAAATATTTTTAAGTTGCAGAAGTAGCTGCTGCCTTAGAGAATGATCCTCAAAATAATGGTTGGTTTTT-TGACCTAAAAAAGAGCCAATGGAC-------CCACTGTGGAATCGGGCGAACACGGCCAAGAAT----------GAGAGACACAAGG-AGAGCGTGTGTGTGTGGCAAGCAG-GACTCCAGAGGAAGGC- i mm10.chr5 I 1 C 0 s canFam3.chr13 48031512 172 + 63241923 --AAATGATTAAAAATTGCTGAAGTAACTGCCATATCATAGAAATATCCTTAAGATAATGG-TGGTTTCTATGAACTAAGAATAGGAAAATAGTCAACATGACCACCATGGAATCATTAAAGTAAAGCCAAGGAT----AAGT-ATGAAAAAGGAAGG-AGAA----GTCATGTGGAATGGAGAA---------------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4128125 190 - 5279953 --AAATTATTAAAACTTACTGATGTAACTGCCACATCACAGTAATATCCTTAAGAAAATGGTTGATTTCTATAAGCCATGAAAAGGAGAATAGTCAGGTGGACCACTGTGGAATCATGAG-ATTAAGCCAATGAT----AAGTAAGTAAAGGGAAAGGCAGGA-GAGAGTATGTGG---GGAGAAGTTACTCAGGGAAGAG i dasNov3.JH568349 C 0 C 0 a score=472169.000000 s hg38.chr4_KI270787v1_alt 95367 47 + 111943 CTGATATGTGGATGATATTTTTTCCAA-TAG-----------AAAAAATCCTGGTTTTG s panTro5.chr4 119662621 47 - 194502333 CTGATATGTGGATGATATTTTTTCCAA-TAG-----------AAAAAATCCTGGTTTTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121076442 46 - 195804263 CTG-TATGTGGATGATATTTTTTCCAA-TAG-----------AAAAAATCCTGGTTTTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4505434 48 - 17550833 CTGATATGTGGATGATATTTTTTCCAA-TAG----------AAAAAAATCCTGGTTTTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69377370 46 - 118206036 CTGATATGTGGATGATATCGTTTCCAA-TAG-----------AAAAAATCCTGGTTTT- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111588114 46 - 190429646 CTGATATGTGGATGATATTTTTTCCAA-CAG------------AAAAGTCCTGGTTTTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110757294 46 - 189454096 CTGATATGTGGATGATATTTTTTCCAA-CAG------------AAAAATCCTGGTTTTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13323722 46 + 26754465 CTGATATGTGGATGATATTTTTTCCAA-CAG------------AAAAATCCTGGTTTTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4225193 46 - 5137665 CTGATATGTGGATGATATTTTTTCCAA-CAG------------AGAAATCCTGGTTTTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122934604 46 - 135778131 CTGACATGTGGATGATATTTTTTCCAA-CAG------------AAAAATCCGGGTTTTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2047093 46 + 2427316 CTGATACGTGGATGATATTTTTTCCAA-CAG------------AAAAATCCTGGTTTTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1342518 46 + 1448899 CTGATATGTGGATGATATTTTTTCCAA-CAG------------AAAAATCCTGGTTTTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53048912 48 - 190850796 CTGACATGTGGATGAGATTTTTTCCAGATAA-----------AAAAAATCCTGGTTTTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8214741 47 - 15139346 CTGATATGCAGATGACATTCTTTCCAG-CAG-----------AAAAAATCGTGGTTTTG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7001535 47 - 7304997 CTGATATGCAGATGGCATTCTTTCCAG-CAG-----------AAAAAATCCTGGTTGTG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9419311 47 - 11631747 CTGATATGCAGAAGACATTCTTTCCAG-CAG-----------AAAAAATCCTGGTTTTG i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1894336 47 + 4188776 CTAATATATGGATGACAAGTGCTCCAA-TGC-----------AAAAAAGTCTTGTTTTC i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8645433 46 + 8790067 CTAATACATGG-TGGCACGAGATTCAA-CAG-----------GAAAAATTCTGATTTTC i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76449288 43 + 151834684 CTAGTCCATGGAGGGCAGGACTCC--A-TGG------------AAGAGTCTGGGTCTC- i mm10.chr5 C 0 C 0 s canFam3.chr13 48031684 46 + 63241923 GTAATATATGGATGAAAAGCATTATAA-TAG------------AAAACATCTGGTTTTC i canFam3.chr13 C 0 I 1 s dasNov3.JH568349 4128315 58 - 5279953 CTAACATATGGCTGACAAGGCTCTAAA-TGGAAAAAAAAATAAATAAATTCTGGTACTC i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1805920 47 + 3286835 I a score=25997.000000 s hg38.chr4_KI270787v1_alt 95414 3 + 111943 --AAG s panTro5.chr4 119662668 3 - 194502333 --AAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121076488 3 - 195804263 --AAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4505482 3 - 17550833 --AAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69377416 1 - 118206036 ----G i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111588160 3 - 190429646 --AAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110757340 3 - 189454096 --AAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13323768 3 + 26754465 --AAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4225239 3 - 5137665 --AAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122934650 3 - 135778131 --AAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2047139 3 + 2427316 --AAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1342564 3 + 1448899 --AAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53048960 3 - 190850796 --AAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8214788 3 - 15139346 --AAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7001582 3 - 7304997 --AAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9419358 3 - 11631747 --AAG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1805967 3 + 3286835 --AAG i micMur3.chrUn_NW_017968520v1 I 47 C 0 s proCoq1.NW_012140747v1 1894383 3 + 4188776 --AAG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8645479 3 + 8790067 --AAG i otoGar3.GL873602 C 0 I 322 s mm10.chr5 76449331 3 + 151834684 --TGG i mm10.chr5 C 0 C 0 s canFam3.chr13 48031731 3 + 63241923 --AGG i canFam3.chr13 I 1 C 0 s dasNov3.JH568349 4128373 3 - 5279953 ACA-- i dasNov3.JH568349 C 0 C 0 a score=191042.000000 s hg38.chr4_KI270787v1_alt 95417 14 + 111943 ACTAAGTTGGGTTT s panTro5.chr4 119662671 14 - 194502333 ACTAAGTTGGGTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121076491 14 - 195804263 ACTAAGTTGGGTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4505485 14 - 17550833 ACTAAGTTGGGTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69377417 14 - 118206036 ACTAAGTTGGGTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111588163 14 - 190429646 ACTTAGTTGGGTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110757343 14 - 189454096 ACTTAGTTGGGTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13323771 14 + 26754465 ACTCAGTTGGGTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4225242 14 - 5137665 ACTCAGTTGAGTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122934653 14 - 135778131 ACTCAGTTGGGTTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2047142 14 + 2427316 ACTCAGTTGGGTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1342567 14 + 1448899 ACTCAGTTGGGTTT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53048963 14 - 190850796 ATTCAGTTGGGTTT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8214791 14 - 15139346 ATTCAGTTGGGTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7001585 14 - 7304997 ATTCAGTTGGGTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9419361 14 - 11631747 ATTCAGTTGGGTTT i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1805970 14 + 3286835 ACCCAGTTGGATTT i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1894386 14 + 4188776 ACCCAGTTGGATTT i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76449334 14 + 151834684 ATTCAGTTGGCCTA i mm10.chr5 C 0 C 0 s canFam3.chr13 48031734 14 + 63241923 ACTCTATTGGATTT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4128376 13 - 5279953 AGTCAGTAGATTT- i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8645482 322 + 8790067 I a score=7979334.000000 s hg38.chr4_KI270787v1_alt 95431 497 + 111943 AAAGCATCACAGAAAAAGC---AGGACTCC---ACATCCTGTTTCCTCTCTCT----TGT-ATTGTAAAAGTATGGATGAGGGCCAGTCATTCTCAGCCAGGCTTTGAAGTGCACCATTAGGCTGCCAGATACCCATT-ACACTAATTGGATCACCAGCCTCATCTAGATCTCATTGGCAAAAGGATTCCAGGGCTACCCATTTCTTCTGCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACATGGACCTGTACTCTCCTTTTGTATTATATGGTAACCCCAGAATGA-TTTTCCAACAGGCTACTTGAATGATGTGAAGAAATGCCAATACTAAATATGTTTGTTGGGCTTAAAACACTTAATTTTACACTTCCAGAGGAT----TTGAAACATTTGCGAA---------------TGGAATCACTGTCTGCCTTGAGAAT---TTTT-TCTCATTAAGCCTACAGACACAACTGCTCCA-ACCTAAGAAATACAGAAATCAGAATATGT---TTA---AGAATAGAAAAA s panTro5.chr4 119662685 500 - 194502333 AAAGCATCACAGAAAAAGCAGGAGGACTCC---ACATCCTGTTTCCTCTCTCT----TGT-ATTGTAAAAGTATGGATGAGGGCCAGTCATTCTCAGCCAGGCTTTGAAGTGCACCATTAGGCTGCCAGATACCCATT-ACACTAATTGGATCACCAGCCTCATCTAGATCTCATTGGCAAAAGGATTCCAGGGCTACCCATTTCTTCTGCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACATGGACCTGTACTCTCCTTTTGTATTATATGGTAACCCCAGAATGA-TTTTCCAACAGGCTACTTGAATGATGTGAAGAAATGCCAATACTAAATATGTTTGTTGGGCTTAAAACACTTAATTTTACACTTCCAGAGGAT----TTGAAACATTTGCGAA---------------TGGAATCACTGTCTGCCTTGAGAAT---TTTT-TCTCATTAAGCCTACAGACACAACTGCTCCA-ACCTAAGAAATACAGAAATCAGAATATGT---TTA---AGAATAGAAAAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121076505 500 - 195804263 AAAGCATCACAGAAAAAGCAGGAGGACTCC---ACATCCTGTTTCCTCTCTCT----TGT-ATTGTAAAAGTATGGATGAGGGCCAGTCATTCTCAGCCAGGCTTTGAAGTGCACCATTAGGCTGCCAGATACCCATT-ACACTAATTGGATCACCAGCCTCATCTAGATCTCATTGGCAAAAGGATTCCAGGGCTACCCATTTCTTCTGCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACATGGACCTGTACTCTCCTTTTGTATTATATGGTAACCCCAGAATGA-TTTTCCAACAGGCTACTTGAATGATGTGAAGAAATGCCAATACTAAATATGTTTGTTGGGCTTAAAACACTTAATTTTACACTTCCAGAGGAT----TTGAAACATTTGCGAA---------------TGGAATCACTGTCTGCCTTGAGAAT---TTTT-TCTCATTAAGCCTACAGACACAACTGCTCCA-ACCTAAGAAATACAGAAATCAGAATATGT---TTA---AGAATAGAAAAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4505499 500 - 17550833 AAAGCATCACAGAAAAAGCAGGAGGATTCC---ACATCCTGTTTCCTCTCTCT----TGT-ATTGTAAAAGTATGGATGAGGGCCAGTCATTCTCAGCCAGGCTTTGAAGTGCACCATTAGGCTGCCAGATACCCATT-ACACTAATTGGATCACCAGCCTCATCTAGATCTCATTGGCAAAAGGATTCCAGGGCTACCCATTTCTTCTGCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACATGGACCTGTACTCTCCTTTTGTATTATATGGTAACCCCAGAATGA-TTTTCCAACAGGCTACTTGAATGATGTGAAGAAATGCCAATACTAAATATGTTTGTTGGGCTTAAAACACTTAATTTTACACTTCCAGAGGAT----TTGAAACATTTGCGAA---------------TGGAATCACTGTCTGCCTTGAGAAT---TTTT-TCTCATTAAGCCTACAGACACAACTGCTCCA-ACCTAAGAAATACAGAAATCAGAATATGT---TTA---AGAATAGAAAAA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69377431 499 - 118206036 AAAGCATCACAGAAAAAGCAGGAGGATTCC---ACATCCTGTTTCCTCTCTCT----TGT-ATTCTAAAAGCATGGATGAGGGCCAGTCATTCTCAGCCAGGCTGTGAAGTGCGCCATTTGGCTGCCAGATACCCATT-ACACTAATTGGATCACCAGCCTCGTCTAGATCTCATTGGCACAAGGATTCCAGGGCTACCCATTTCTTCTGCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACATGGACCTGTACTCTCCTTTTGTATTATGTGGTAACCCCAGAATGA-TTTTCCAACAGTCTACTTGAATGATGTGAAGAAATGCCAATACTAAATATGTTTGTCCGGCTTAAAACACTTAATTTTACACTT-CAGAGGAT----TTGAAACATTTGCGAA---------------TGGAATAACTGTCTGCCTTGAGAAT---TTTT-TCTCATTAAGCCTACAGACACAACTGCTCCA-ACCTAAGAAATACAGAAATCAGAATATGT---TTA---AGAATAGAAAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111588177 500 - 190429646 AAAGCATCACAGAAAAAGTAGGAGGATTCC---ACATCCTGTTTCCTCTCCCT----TGT-ATTGAAAAAGTATGGATGAGGGCCAGTCATTCTCAGCCAGGCTTTGAAGTGTGCCATTTGGCTGCCAGATACCCATT-ACACTAATTGGATCACCAGCCTCATCTAGATCTCATTGGCACAAGGATTCCAGGGCTGTCCATTTCTTCTGCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACATGGACCTGTACTCTCCTTTTGTATTATATGGTAACCCAGGAATGA-TTTTTCAACAGGCTACTTGAATGATTTGAAGAAATGTCAATACTAAATATGTTTGTCGGGCTCAAAACACTTAATTTTACACTTTCAGAGGAT----TTGAAACATTTGCAAA---------------CGGAGTCACTGTCTGCCTTGAGAAT---TTTT-TCTCATTAAGCCTATAGACACAACTGCCCCA-ACCTAACAAATACAGAAATCAGAATATGT---TTA---AGAATAGAAAAA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110757357 500 - 189454096 AAAGCATCACAGAAAAAGTAGGAGGATTCC---ACATCCTGTTTCCTCTCCCT----TGT-ATTGCAAAAGTATGGATGAGGGCCAGTCATTCTCAGCCAGGCTTTGAAGTGTGCCATTTGGCTGCCAGATACCCATT-ACACTAATTGGATCACCAGCCTCATCTAGATCTCATTGGCACAAGGATTCCAGGGCTGTCCATTTCTTCTGCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACATGGACCTGTACTCTCCTTTTGTATTATATGGTAACCCAAGAATGA-TTTTTCAACAGGCTACTTGAATGATTTGAAGAAATGTCAATACTAAATATGTTTGTCGGGCTCAAAACACTTAATTTTACACTTTCAGAGGAT----TTGAAACATTTGCAAA---------------CGGAGTCACTGTCTGCCTTGAGAAT---TTTT-TCTCATTAAGCCTATAGACACAACTGCCCCA-ACCTAACAAATACAGAAATCAGAATATGT---TTT---AGAATAGAAAAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13323785 500 + 26754465 AAAGCATCACAGAAAAAGTAGGAGGATTCC---ACATCCTGTTTCCTCTCCCT----TGT-ATTGCAAAAGTATGGATGAGGGCCAGTCATTCTCAGCCAGGCTTTGAAGTGTGCCATTTGGCTGCCAGATACCCATT-ACACTAATTGGATCACCAGCCTCATCTAGATCTCATTGGCACAAGGATTCCAGGGCTGTCCATTTCTTCTGCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACATGGACCTGTACTCTCCTTTTGTATTATATGGTAACCCAAGAATGA-TTTTTCAACAGGCTACTTGAATGATTTGAAGAAATGTCAATACTAAATATGTTTGTCGGGCTCAAAATACTTAATTTTACACTTTCAGAGGAT----TTGAAACATTTGCAAA---------------TGGAGTCACTGTCTGCCTTGAGAAT---TTTT-TCTCATTAAGCCTATAGACACAACTGCCCCA-ACCTAACAaatacagaaatcagaatatgt---tta---agaatagaaaaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4225256 500 - 5137665 AAAGCATCACAGAAAAAGTAGGAGGATTCC---ACATCCTGTTTCCTCTCCCT----TGT-ATTGCAAAAGTATGGATGAGGGCCAGTCATTCTCAGCCAGGCTTTGAAGTGTGCCATTTGGCTGCCAGATACCCATT-ACACTAATTGGATCACCAGCCTCATCTAGATCTCATTGGCACAAGGATTCCAGGGCTGTCCATTTCTTCTGCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACATGGACCTGTACTCTCCTTTTGTATTATATGGTAACCCAAGAATGA-TTTTTCAACAGGCTACTTGAATGATTTGAAGAAATGTCAATACTAAATATGTTTGTCGGGCTCAAAACACTTAATTTTACACTTTCAGAGGAT----TTGAAACATTTGCGAA---------------CGGAGTCACTGTCTGCCTTGAGAAT---TTTT-TCTCATTAAGCCTATAGACACAACTGCTCCA-ACCTAACAAATACAGAAATCAGAATATGT---TTA---AGAATAGAAAAA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122934667 498 - 135778131 AAAGCATCACAGAAAAAGTAGGAGGATTCC---ACATCCTGTTTCCTCTCCCT----TGT-ATTGCAAAAGTATGGATGAGAGCCAGTCATTCTCAGCCAGGCTTTGAAGTGTGCCATTTGGCTGCCAGATACCCATT-ACACTAATTGGATCACCAGCCTTATCTAGATCTCATTGGCACAAGGATTCCAGGGCTGTCCATTTCTTCTGCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACATGGACCTGTACTCTCCTTTTGTATTATATGGTAACCCAAGAATGA-TTTCTCAACAGGCTACTTGAATGATTTGAAGAAATGTCAATACTAAATATGTTTGTCGGGCTTAAAACACTTAATTTTACACTTTCAGAGGAT----TTGAAACATTTGCGAA---------------CGGAGTCACTGTCTGCCTTGAGAAT---TTTT-TCTCATTAAGCCTATAGACACAACTGCTCCA-ACCTAACAAATACAGAAATCAGA--ATGT---TTA---AGAATAGAAAAA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2047156 500 + 2427316 AAAGTATCACAGAAAAAGTAGGAGGATTCC---ACATCCTGTTTCCTCTCCCT----TGT-ATTGCAAAAGTATGGATGAGGGCCAGTCATTCTCAGCCAGGCTTTGAAGTGTGCCATTTGGCTGCCAGATACCCATT-ACACTAATTGGATCACCAGCCTCATCTAGATCTCATTGGCACAAGGATTCCAGGGCTGTCCATTTCTTCTGCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACATGGACCTGTACTCTCCTTTTGTATTATATGGTAACCCAAGAATGA-TTTTTCAACAGGCTACTTGAATGATTTGAAGAAATGTCAATACTAAATATGTTTGTCAGGCTCAAAACACTTAATTTTACACTTTCAGAGGAT----TTGAAACATTTGCGAA---------------CGGAGTCACTGTCTGCCTTGAGAAT---TTTT-TCTCATTAAGCCTATAGACACAACTGCTCCA-ACCTAACAaatacagaaatcagaatatgt---tta---agaatagaaaaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1342581 499 + 1448899 AAAGCATCACAGAAAAAGTAGGAGGATTCC---ACATCCTGTTTCCTCTCCCT----TGT-ATTGCAAAAGTATGGATGAGAGCCAGTCATTCTCAGCCAGGCTTTAAAGTGTGCCATTTGGCTGCCAGATCCCCATT-ACACTAATTGGGTCACCAGCCTCATCTAGATCTCATTGGCACAAGGATTCCAGGGCTGCCCATTTCTTCTGCAGCGTTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACATGGACCTGTACTCTCCTTTTGTATTATAT-GTAACCCAGGAATGA-TTTTTCAACAGGCTACTTGAATGATTTGAAGAAATGCCAACACTAAATATGTTTGTCGGGCTTAAAACACTTAATTTTACACTTTCAGAGGAT----TTGAAACATTTGCAAA---------------TGGAATCACTGTCTGCCTTGAGAAT---TTTT-TCTCATTAAGCCTATAGACACAACTTCTCCA-ACCTAACAAATGCAGAAATCAGCATATGT---TTA---AGAATAGAAAAA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53048977 486 - 190850796 AAAGCATCACAGAAAAAGCAGGAGGATTCC---ACACCCTATTTCCTCTCTCT----TGT-ATTGTAAAAGTATGGATGAGGGCCAGCCATTCTCAGCCAGGCTTTGAAGTGAGCCATTTGGCTGCCAGATACCCATT-ATGCTAATTGGATCACCAGCCTCATCTATATCTCATTGACACAAGGATTTCAGGGCTGCCCATTTCTTCTGCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACGTAAACCTGTACTCTCCTGTTGCATTATATGGTAACCCCAAAATGA-TTTTTCAACAGGCTATTTGAATGATGTGGAGAAATGCCAATGCTAAATATATTTGTTGGGCTTAAAACACTTAATTTTACCCCTCTGGAGCAT----TTGAAATG------AA---------------TGCAATCATTGTCTGCTTTGAGAAT---TTTT-TCTCATTAAGTCTATAGACACAACTGCTCCA-ACCTAAC--------AAATCAGAATATGT---TTC---AGAATAGAAAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8214805 471 - 15139346 A---------------------AGGATTCC---ACACTCTGTTTCCTCTCTCT----TGT-ATTGCAAAAGTATGGGTGAGGGCCAGTCATTCTCAGCCAGGCTTTGAAGTGCACCATTTGGCTGCCAGATACCCATT-ACACTAATTGGATCACCAGCCTCATCTAGATCTCATTGACACGAGGATTTCAGGGCTGCCCATTTCTTCTGAAGCATTAAATT----GA---------C----------ATACAATAAA-CATAAAATATTCACGTGAAACTCTACTCTCCTTTTGCATTATATGGTAACCCGAAAATGATTTTTTCAACAGGCTACTTGAATAATGTGGAGAAATGCCAATGCTAAATACGTTTGTCGGGCTTAAAACACTTAATTTTACACCTCCGGAGCAT----TTGAAATGTTTGCAAA---------------TGGAATCACTGTCTGCTTTGAGAAT---TTTT-TCTCATTAAGCCTATAGATACAACTGCTCCA-ACCTAAC--------AAATCAGAATATGT---TTC---AGAATAGAAAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7001599 491 - 7304997 AAATCATCACAGAAAAAGCAGGAGGATTCC---ACACCCTGTTTCCTCTCTCT----TGT-ATTGTAAAAGTATGGATGGGGGCCAGTCATTCTCAGCCAGGCTTTGAAGTGCGCCGTTTGGCTGCCAGATACCCATT-ACAGTAATTGGATCACCAGCCTCATCTATATATCATTGACACAAGGATTTCAGGGCTGTCCATTTCTTCTGCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACGTGAAACCGTACCCTCCTTTTGCATTATATGGTAACCCCAAAATGA-TTTTTCAACAGGCTACTTGAAT-ATGTGGAGAAATGCCAATGCTAAATATGTTTGTCGGGCTTAAAACACTTAATTTTACACCTCCAGAGCAT----TTGAAATGTTTGCGAA---------------TGGAATCATTGTCTGCTTTGAGAAT---TTTT-TCTCATTAAGCCTATAGACACAACTGCTCCA-ACCTAAC--------AAATCAGAATATGT---TTC---AGAAAAGAAAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9419375 491 - 11631747 AAAGCATCACAGAAAAAGCAGGAGGATTCC---ACACCCTATTTCCTCTCTCT----TGT-ATTGTAAAAGTATGGATGAGGGCCAGTCATTCTCAGCCAGGCTTTGAAGTGTGCCATTTGGCTGCCAGATACCCATT-ACACTAATTGGATCACCAGCTTCATCTATATCTCATTGACACAAGGATTTCAGGGCTGCCCATTTCTTCTGCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCACGTGAACCTGTACTCTCCTTTTGTATTATATGGTAACCCCAAAATGA-TTTTTCAACAGGCTATTTGAATGATGTGGAGAAATGCCAATGCTAAATATGTTTGTCGGGCTTAAAACACTTAA-TTTACACCTCCAGAGCAT----TTGAAATGTTTGCAAA---------------TGGAATCATTGTCTGCTTTGAGAAT---TTTT-TCTCATTAAACCGATAGACACAACTGCTCCA-ACCTAAC--------AAATCAGAATATGT---TTC---AGAATAGAAAAA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1805984 498 + 3286835 AAAGCATCACAGAAAAAGCAGGAGGATTCC---ACATCCTGCTCTCTCTCCTG----TAT-ATTCTGAAAGTGTGGATGACGGCCAGTCATTCTCAGCCAGGTTTTCAAGTGTATCATTTGGCTGCCAGACGCCCATT-ACACTAATTGGGTCACCAGCCTCTTCTTTATCTCATTGACACAAGGATTCCAGGGATGCTCATTTTTTCTACAGCGTTAAATT----GA---------C----------ATACAAGAAACCATAAAATATTCATATGGACCTGTACTCTACGTTTGTATTATACTATAATTCCACAATGA-TTTCTTAACAGCCTACTTGAGGGATGCAAAGGAATGCCAATACTAAATACATTTCTCAGGCTTAAA--AATTAATTTTATACTTCCGGAGCAT----TTGAAGCACTTGGGAA---------------TGGAATTACCATCTTCTTTAAGAAT---TTTT-TCTTGTTAAGTCTAGAGGTGCAACTGCTCCA-ACCTAACAAACACAGAAATCAGAGCATTT---TTA---AGAATAAAAAAA i micMur3.chrUn_NW_017968520v1 C 0 I 645 s proCoq1.NW_012140747v1 1894400 495 + 4188776 AAAGCATCACAGAAAAAGCAGGAGGATTCC---ACATCCTGCTCTCTCTCCTT----TATAATTGTCAAAGTGTGGATGAGGGCCAGTCATTCTCAGCCAGGTTCTGAAGTGAAGCATTTGGCTGCCAGATGCCCATT-ACACTAATTGGATCACCAGCCTCTTCCATATCTCATTGACAGAAGGATTCCAGGGATGCTCATTTCTTCTTCAGCATTAAATT----GA---------C----------ATACAATAAACCATAAAATATTCATATGGACCTGTACTCTACATTTCTATTATATTGTAATTCCACAATGA-TTTCTCAACAGCCTACTTGAGGGATGTGAAGGAATGTCAATGCTAAATACATTTCTCAGGCTTAAA--AATTAATTTTATACTTCATGAGCAT----TTGAAGCATTTGGGAA---------------TGGAATTACCATCTTCCTTAAGAAT---TTTT-TCTTGTTAAGTCTAGAGATGCAACTGCTCCA-ACCT----AACGCAGAAATCAGAGCATTT---TTA---AGAATAGAAAAA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8645804 487 + 8790067 AAAGCATCACAGAAAAAGTAGGAGGATTCT---ACACCCTGTTTTCTCTGCTT----TAT-A-TGTGAAAATGTGGGTAAGGGCCAGTCCTCCTTAACCAGGTTTTGAAGTGTACTGTTTGGCTACCAGATGCCCATT-ACACTAATTGGATCCCCAGCCCACTCTATCTCTCCTTGACACAAGAATTCCAAGGATGCTCATTCTTTCTACAGCATTAAATT----GC---------C----------ATAAAGGAAAGAGTAAAATATTCATATGGACCTGTACTAGACATTTGTATTATACTATAATCCCACATTGA-TTTCTCAACAGTCTACTTGAGTGATGTGAAAGAATGCCAATAC----------TCTCAGGCTTAAA--AATTAATTTTAGACTTCCGGAGCAT----CTGAAGCCCTTAGGAA---------------TGGAATTACCATCTTCCTGAAGAAT---TTTT-TCTTGTTAAGCCTAGAGATACAATTGCTCTG-ACCTGACAAACACAGAAATCAGAGCACTT---TTA---AGAATAGAGGAG i otoGar3.GL873602 I 322 C 0 s mm10.chr5 76449348 491 + 151834684 AAAGCATCACACAGAACACAGGAGGATTACTCGGCATCCTGTTGTCTCTCCTT----CCC-ATTGTGAAAGTGTGGAAGAGGGCCAGTCACTCTCAGCCAGGCTTTGAAGTGCACCATTTGGGAGCCAGATGCCCATTAATGCTAATTGGATCAGTGGCCTCTCCTTTCTCTCACCGACACAAGGATGGCAGAGCTGCCCCTTCCTTCTGCAGCATTAAAATTTAAGA---------CTCCATCATCTATACAATAAGCCATAAAATATTCACATGGACC-ATGCTCCACT------TTACATTGCAACTC-----TGA-ATT--CAACAGCCTACTT-AGCAATGTGAAGAAACACCAATACTCAACGTATTACTCAGATTTAAG--CATTTACTATATGC-TCGGGCACAT----CTGAAGCACTTGTGGG---------------TGAAATTTCCTTATT---------T---TTTT-CCTTATTGAACCTCTAGACTCAATTCCAATATATCTCAGTTAGAAAGAAGTTAGAGTATTT---TTT---AGAATATAAAA- i mm10.chr5 C 0 C 0 s canFam3.chr13 48031748 539 + 63241923 AAAGCAGCACAGAAAGAACAAGAGGATTCC---ACATCCTGTTTTCTCTCTCTCCTCTAT-ATTACGAAAGTGTGGATGAGGGCCAGTCTTTCTCAGCCAGGTTTTGAAGTGCATCATTTGGCTGCCAGATGCCCATT-ATACTAATTGGATCACCAACCTCCTCTATATCTCATTGACACAAGGATTCCAGGGCTACCTATTTCTTTTGCAGCATTAAAATTTAAGAATACCCACCC----------ATACAATAAACTATAAAATATTCACATGGGTCTGTACTCTACTTTTATATTATACAGTAACTCCAGAATGA-TTCTTCAATAGCCTGGTTGAGTGATGTGAAAGAATGCCAATACTAAATAGGTTTCTCATGCT-AAAACATTTAATTTTATACTTCCAGAGCATATACTTGAAGCATATGTGAATATTTACAGTTTTATTGGAATCATCATCTTCCTTAAGAAT---TTTTGTCTTGTTAGGCCTAAATGAACAATTGCTCTA-ACTCAACAAATACAAAAATTAGAGTATTTTTGTTA---GAAATACAAAAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4128389 499 - 5279953 GAAGTATCACAGAAAAAGCAGGAAGATTCC---ATATCCTGATTT---TCCTT----TAT-GTTGTGAAAGTATGGATTGAGGCCAA-AATGCACTGC---ATTTTGAAGTGCATTGTTTGGCTGCCAGATTCCCATT-ATACTAACTAGATCACCAGCCTCCTCT-TATCTCAATGACATAAGGATTCCAGGGCTACCCATTTCTTCTACAGCATTAAAATTTAAGAATATCACC-C----------ATACAATAACACATAAAATATTCACATGGCCCTGTACTC-----TTGTATTATACCTTAACTCCAGAACGA-TTCTTCATCAATCTACTTGAGTGATATGAAGGAATGTCAATACTAAATATGTTTCTCATGCTTAAA-CATTTAATTTTATACTTCCAGAGCAC----TTGAAGCACTTGGGAA---------------TATTTATGCAGTTTG--ATGAGAATCACTGTT-TCTTGTTAAGCCTATAGATAAAACTGATGCA-ATCTAACAAATACAGAAGTCAAAGTCTTT---TTGCTTAAAATAGAA--- i dasNov3.JH568349 C 0 C 0 a score=793988.000000 s hg38.chr4_KI270787v1_alt 95928 61 + 111943 GAAAGATTTAATATATTCACATTCAGAAAGAAAAATGTCTACATCAAC-ATACATATGGCTA s panTro5.chr4 119663185 61 - 194502333 GGAAGATTTAATATATTCACATTCAGAAAGAAAAATGTCTACATCAAC-ATACATATGGCTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077005 61 - 195804263 GGAAGATTTAATATATTCACATTCAGAAAGAAAAATGTCTACATCAAC-ATACATATGGCTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4505999 61 - 17550833 GAAAGATTTAATATATTCACATTCAGAGAGAAAAATGTCTATATCAAC-ATACATATGGCTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69377930 61 - 118206036 GAAGGATTTAATATATTCACATTCAGAAAGAAAAATGTCTACATCAGC-ATACAAATGGCTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111588677 61 - 190429646 GAAAGATTTAATATATTCACATTCAGAAAGAAAAATGTCTACATCAAC-ATACATGTGGCTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110757857 61 - 189454096 GAAAGATTTAATATATTCACATTCAGAAAGAAAAATGTCTACATCAAC-ATACATGTGGCTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13324285 61 + 26754465 gaaAGATTTAATATATTCACATTCAGAAAGAAAAATGTCTACATCAAC-ATACATGTGGCTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4225756 61 - 5137665 GAAAGATTTAACATATTCACATTCAGAAAGAAAAATGTCTACATCAAC-ATACATATGGCTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122935165 61 - 135778131 GAAAGATTTAATATATTCACATTCAGAAAGAAAAATGTCTACATCAAC-ATGCACATGGCTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2047656 61 + 2427316 gaaAGATTTAACATATTCACATTCAGAAAGAAAAATGTCTACATCAAC-ATACATATGGCTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1343080 61 + 1448899 GAAAGATTTAATATATTCACATTCAGAAAGAAAAATGTCTACATCAAT-ATACATATGGCTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53049463 58 - 190850796 ----GATTTAATATGTTCACATTCAGAAAGAAAATTGTCTACATCAATAATATATATGGCTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8215276 57 - 15139346 ----GATTTAATATATTCACATTCAGAAAGAAAATTGTCTACATCAAT-ATACAAATGGCTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7002090 57 - 7304997 ----GATTTAATATATTCACATTCAGAAAGAAAACTGTCTACATAAAT-ATACAAATGGTTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9419866 57 - 11631747 ----GATTTAATATACTCACATTCAGAAAGAAAATTGTCTACATCAAT-ATACAAATGGCTA i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1894895 56 + 4188776 -TAAAAATT----TTTTCATATTCAGAAATTAAAATGTCTACATAAAA-ATACATATAGCTA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8646291 55 + 8790067 -AAATACTT----TTTTCATATTCAAATATTTAAATATCTACAT-AAA-ATACACATGGCTA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76449839 54 + 151834684 -----ATTGAATACCTTCAT-TTCAGAAATTAAA-TACCTTCATAATT-ATACATATGTCTA i mm10.chr5 C 0 C 0 s canFam3.chr13 48032287 61 + 63241923 GAAAGATTTAATACTTTCACATTTGGAAATCAAAATGTTTATAAAAAT-ATACATATGGCCA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4128888 60 - 5279953 -AAAGATTAAATACCTTCATACTCAAAATTTTAAATATCAACATCAAT-TTACATATGGCTG i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I a score=17290.000000 s hg38.chr4_KI270787v1_alt 95989 1 + 111943 T s panTro5.chr4 119663246 1 - 194502333 T i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077066 1 - 195804263 T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506060 1 - 17550833 T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69377991 1 - 118206036 T i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111588738 1 - 190429646 T i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110757918 1 - 189454096 T i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13324346 1 + 26754465 T i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4225817 1 - 5137665 T i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122935226 1 - 135778131 T i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2047717 1 + 2427316 T i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1343141 1 + 1448899 T i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53049521 1 - 190850796 T i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8215333 1 - 15139346 T i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7002147 1 - 7304997 T i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9419923 1 - 11631747 T i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1894951 1 + 4188776 T i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8646346 1 + 8790067 T i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76449893 1 + 151834684 T i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4128948 1 - 5279953 T i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e canFam3.chr13 48032348 0 + 63241923 C a score=39695.000000 s hg38.chr4_KI270787v1_alt 95990 3 + 111943 ATA s panTro5.chr4 119663247 3 - 194502333 ATA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077067 3 - 195804263 ATA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506061 3 - 17550833 ATA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69377992 3 - 118206036 ATA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111588739 3 - 190429646 ATA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110757919 3 - 189454096 ATA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13324347 3 + 26754465 ATA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4225818 3 - 5137665 ATA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122935227 3 - 135778131 ATA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2047718 3 + 2427316 ATA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1343142 3 + 1448899 ATA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53049522 3 - 190850796 ATA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8215334 3 - 15139346 ATA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7002148 3 - 7304997 ATA i cebCap1.NW_016107439v1 C 0 C 0 s proCoq1.NW_012140747v1 1894952 3 + 4188776 ATA i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8646347 3 + 8790067 GTA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76449894 3 + 151834684 ATA i mm10.chr5 C 0 I 2 e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e dasNov3.JH568349 4128949 0 - 5279953 C e aotNan1.NW_018493494v1 9419924 0 - 11631747 C e canFam3.chr13 48032348 0 + 63241923 C a score=217274.000000 s hg38.chr4_KI270787v1_alt 95993 19 + 111943 Tagtcatgtgctacataat s panTro5.chr4 119663250 19 - 194502333 Tagtcatgtgctacataat i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077070 19 - 195804263 Tagtcatgtgctacataat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506064 19 - 17550833 Tagtcatgtgctacataat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69377995 19 - 118206036 TTgtcatgtgctacataat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111588742 19 - 190429646 Tagtcatgtgctacataat i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110757922 19 - 189454096 Tagtcatgtgctacataat i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13324350 19 + 26754465 Tagtcatgtgctacataat i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4225821 19 - 5137665 Tagtcatgtgctacataat i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122935230 19 - 135778131 Tagtcatgtgctacataat i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2047721 19 + 2427316 Tagtcatgtgctacataat i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1343145 19 + 1448899 Tagtcatgtgctacataat i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53049525 19 - 190850796 cagtcatgtgctacatact i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8215337 19 - 15139346 cagtcatgtgctacatact i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7002151 19 - 7304997 cagtcatgtgctacatact i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9419924 18 - 11631747 -agtcatgtgctacatact i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1894955 19 + 4188776 cagtcatgcgcgacataat i proCoq1.NW_012140747v1 C 0 I 2195 s otoGar3.GL873602 8646350 11 + 8790067 CAGT--------ACACAAT i otoGar3.GL873602 C 0 I 7 e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e canFam3.chr13 48032348 0 + 63241923 C a score=213937.000000 s hg38.chr4_KI270787v1_alt 96012 20 + 111943 gacatgtcagtcaacgatgg s panTro5.chr4 119663269 20 - 194502333 gacatgtcagtcaacgatgg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077089 20 - 195804263 gacatgtcagtcaacgatgg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506083 20 - 17550833 gacatgtcagtcaacgatgg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378014 20 - 118206036 gacatgttagtcaacgatgg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111588761 20 - 190429646 gacatgtcaatcaacgatgg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110757941 20 - 189454096 gacatgtcaatcaacgatgg i macFas5.chr5 C 0 I 199 s macNem1.NW_012012466v1 13324369 20 + 26754465 gacatgtcaatcaacgatgg i macNem1.NW_012012466v1 C 0 I 201 s cerAty1.NW_012001307v1 4225840 20 - 5137665 gacatgtcaatcaacgatgg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122935249 20 - 135778131 gacatgtcaatcaatgatgg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2047740 20 + 2427316 gacatgtcaatcaacgatgg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1343164 20 + 1448899 gacatgtcaatcaacgatgg i colAng1.NW_012119221v1 C 0 I 199 s calJac3.chr3 53049544 20 - 190850796 gacatgtcagtcaccaatgg i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8215356 20 - 15139346 gacacgtcagtaaccggtgg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7002170 20 - 7304997 gacatgtcagtcaccaatgg i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9419942 20 - 11631747 gacatgtcagtcaccaatgg i aotNan1.NW_018493494v1 C 0 C 0 s otoGar3.GL873602 8646368 20 + 8790067 GAAATGtcagtcaacaacag i otoGar3.GL873602 I 7 I 7 e proCoq1.NW_012140747v1 1894974 2195 + 4188776 I e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e canFam3.chr13 48032348 0 + 63241923 C a score=10920.000000 s hg38.chr4_KI270787v1_alt 96032 1 + 111943 a s panTro5.chr4 119663289 1 - 194502333 a i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077109 1 - 195804263 a i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506103 1 - 17550833 a i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378034 1 - 118206036 a i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111588781 1 - 190429646 a i rheMac8.chr5 C 0 I 200 s macFas5.chr5 110758160 1 - 189454096 a i macFas5.chr5 I 199 C 0 s cerAty1.NW_012001307v1 4225860 1 - 5137665 a i cerAty1.NW_012001307v1 C 0 I 199 s chlSab2.chr7 122935269 1 - 135778131 a i chlSab2.chr7 C 0 I 199 s manLeu1.NW_012104388v1 2047760 1 + 2427316 a i manLeu1.NW_012104388v1 C 0 I 200 s colAng1.NW_012119221v1 1343383 1 + 1448899 a i colAng1.NW_012119221v1 I 199 C 0 s calJac3.chr3 53049564 1 - 190850796 a i calJac3.chr3 C 0 I 915 s saiBol1.JH378162 8215376 1 - 15139346 a i saiBol1.JH378162 C 0 I 750 s cebCap1.NW_016107439v1 7002190 1 - 7304997 a i cebCap1.NW_016107439v1 C 0 I 868 s aotNan1.NW_018493494v1 9419962 1 - 11631747 a i aotNan1.NW_018493494v1 C 0 I 868 s otoGar3.GL873602 8646395 1 + 8790067 a i otoGar3.GL873602 I 7 C 0 e proCoq1.NW_012140747v1 1894974 2195 + 4188776 I e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e canFam3.chr13 48032348 0 + 63241923 C e macNem1.NW_012012466v1 13324389 201 + 26754465 I a score=-1906.000000 s hg38.chr4_KI270787v1_alt 96033 1 + 111943 -g s panTro5.chr4 119663290 1 - 194502333 -g i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077110 1 - 195804263 -g i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506104 1 - 17550833 -g i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378035 1 - 118206036 -g i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110758161 1 - 189454096 -a i macFas5.chr5 C 0 C 0 s colAng1.NW_012119221v1 1343384 1 + 1448899 -g i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8646396 1 + 8790067 t- i otoGar3.GL873602 C 0 C 0 e proCoq1.NW_012140747v1 1894974 2195 + 4188776 I e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e aotNan1.NW_018493494v1 9419963 868 - 11631747 I e cebCap1.NW_016107439v1 7002191 868 - 7304997 I e saiBol1.JH378162 8215377 750 - 15139346 I e calJac3.chr3 53049565 915 - 190850796 I e canFam3.chr13 48032348 0 + 63241923 C e manLeu1.NW_012104388v1 2047761 200 + 2427316 I e chlSab2.chr7 122935270 199 - 135778131 I e cerAty1.NW_012001307v1 4225861 199 - 5137665 I e macNem1.NW_012012466v1 13324389 201 + 26754465 I e rheMac8.chr5 111588782 200 - 190429646 I a score=140472.000000 s hg38.chr4_KI270787v1_alt 96034 24 + 111943 atggtagctccata---------------------------------------------cctattgttg s panTro5.chr4 119663291 24 - 194502333 atggtagctccata---------------------------------------------cctattgttg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077111 24 - 195804263 atggtagctccata---------------------------------------------cctattgttg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506105 24 - 17550833 atgatagctccata---------------------------------------------cctattgttg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378036 24 - 118206036 atggtagctccata---------------------------------------------cctattgtag i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111588982 24 - 190429646 atggtagctccata---------------------------------------------cctattgttg i rheMac8.chr5 I 200 C 0 s macFas5.chr5 110758162 24 - 189454096 atggtagctccata---------------------------------------------cctattgttg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13324590 24 + 26754465 atggtagctccata---------------------------------------------cctattgttg i macNem1.NW_012012466v1 I 201 C 0 s cerAty1.NW_012001307v1 4226060 24 - 5137665 atggtagctccata---------------------------------------------cctattgttg i cerAty1.NW_012001307v1 I 199 C 0 s chlSab2.chr7 122935469 24 - 135778131 atggtagctccata---------------------------------------------cctattgttg i chlSab2.chr7 I 199 C 0 s manLeu1.NW_012104388v1 2047961 24 + 2427316 atggtagctccata---------------------------------------------cctattgttg i manLeu1.NW_012104388v1 I 200 C 0 s colAng1.NW_012119221v1 1343385 24 + 1448899 atggtagctccata---------------------------------------------cctattgttg i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8646397 69 + 8790067 gtgatggcctcataagattatagtgtagccaaaaaatcctattgcctaCtatttactactctattgtca i otoGar3.GL873602 C 0 I 117 e proCoq1.NW_012140747v1 1894974 2195 + 4188776 I e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e aotNan1.NW_018493494v1 9419963 868 - 11631747 I e cebCap1.NW_016107439v1 7002191 868 - 7304997 I e saiBol1.JH378162 8215377 750 - 15139346 I e calJac3.chr3 53049565 915 - 190850796 I e canFam3.chr13 48032348 0 + 63241923 C a score=1980023.000000 s hg38.chr4_KI270787v1_alt 96058 318 + 111943 cttctgaagacccttcagtggggcaagatgcagaggtggaagacagtgatattgatgattctgaccccatataggcctaggctaatgtgcatgtttttgtcttcattcttaacaaaagagttcaaaaagtttttaaaaaattaaatagaa--aaaaagcttatacaaaggaac----agaaagaaaataagtttgtacagttgtacaagtatttgtattttaag----ctaagcattattacaaaagagcttaaaagcttaaaaatttaaaagtgtgtaaagtaaaaatgttacagcaagctaagggtaatttattattgaagaaaga s panTro5.chr4 119663315 317 - 194502333 cttctgaagacccttcagtggggcaagatgcagaggtggaagacagtgatattgatgattctgaccccgtataggcctaggctaatgtgcatgtttttgtcttcattcttaacaaaagagttcaaaaagtttttaaaaaattaaatag-a--aaaaagcttatacaaaggaac----agaaagaaaataagtttgtacagttgtagaagtatttgtattttaag----ctaagcattattacaaaagagcttaaaagcttaaaaatttaaaagtgtataaagtaaaaatgttacagcaagctaagggtaatttattattgaagaaaga i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077135 317 - 195804263 cttctgaagacccttcagtggggcaagatgcagaggtggaagacagtgatattgatgattctgaccccgtataggcctaggctaatgtgcatgtttttgtcttcattcttaacaaaagagttcaaaaagtttttaaaaaattaaatag-a--aaaaagcttatacaaaggaac----agaaagaaaataagtttgtacagttgtacaagtatttgtattttaag----ctaagcattattacaaaagagcttaaaagcttaaaaatttaaaagtgtataaagtaaaaatgttacagcaagctaagggtaatttattattgaagaaaga i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506129 322 - 17550833 cttctgaagacccttcagtgaggcaagatgcagaggtggaagacagtgatattgatgattctgaccccgtataggcctaggctaatgtgcatgtttttgtcttcattcttaacaaaagagttcaaaaagtttttaaaaaattaaatagaa--aaaaagcttatacaaaggaacagaaagaaagaaaataagtttgtacagttgtacaagtatttgtattttaag----ctaagcattattacaaaagagcttaaaagcttaaaaatttaaaagtgtataaagtaaaaatgttacagcaagctaagggtaatttattattgaagaaaga i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378060 322 - 118206036 ctcctgaagacccttcagtggggcaagatgcagaggtggaagacagtgatattgatgattctgaccccatgtaggcctaggctaatgtgcatgtttttgtcttcatttttaacaaaagagttcaaaaagttttcaaaaaatttaatagaa--aaaaagcttatacaaaggaatagaaagaaagaaaataagtttgtacagttgtacaagtatttgtattttaag----ctaagtgttattacaaaattgtttaaaagtttaaaaattaaaaagtgtataaagtaaaaacgttacagcaagctaagggtaatttattattgaagaaaga i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111589006 324 - 190429646 ttcctgaagacccttcagtggggcaagatgcagaggtggaagacagtgatattgatgattctgaccccatgtacgcctaagctaatgtgcatgtttttgtcttcatttttaacaaaaaagttcaaaaagttttaaaaagattaaatagaaacaaaaagcttatacaaaggaacagaaagaaagaaaataagtttgtacagttgtacaagtatttgtattttaag----ttaagtgttattacaaaagagtttaaaagtttaaaaatttaaaagtgtataaagtaaaaacgttacagcaagctaaaggtaatttattattgaagaaaga i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110758186 324 - 189454096 ttcctgaagacccttcagtggggcaagatgcagaggtggaagacagtgatattgatgattctgaccccatgtacgcctaagctaatgtgcatgtttttgtcttcatttttaacaaaaaagttcaaaaagttttaaaaagattaaatagaaacaaaaagcttatacaaaggaacagaaagaaagaaaataagtttgtacagttgtacaagtatttgtattttaag----ttaagtgttattacaaaagagtttaaaagtttaaaaatttaaaagtgtataaagtaaaaacgttacagcaagctaagggtaatttattattgaagaaaga i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13324614 324 + 26754465 ttcctgaagacccttcagtggggcaagatgcagaggtggaagacagtgatattgatgattctgaccccatgtacgcctaagctaatgtgcatgtttttgtcttcatttttaacaaaaaagttcaaaaagttttaaaaagattaaatagaaacaaaaagcttatacaaaggaacagaaagaaagaaaataagtttgtacagttgtacaagcatttgtattttaag----ttaagtgttattacaaaagagtttaaaagtttaaaaatttaaaagtgtataaagtaaaaacgttacagcaagctaagggtaatttattattgaagaaaga i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4226084 323 - 5137665 ttcctgaagacccttcagtggggcaagatgcagaggtggaagacagtgatattgatgattctgaccccatgtacgcctaagctaatgtgcatgtttttgtcttc-tttttaacaaaaaagttcaaaaagttttaaaaagattaaatagaaacaaaaagcttatacaaaggaacagaaagaaagaaaataagtttgtacagttgtacaagtatttgtattttaag----ttaagtgttattacaaaagagtttaaaagtttaaaaatttaaaagtgtataaagtaaaaacgttacagcaagctaagggtaatttattattgaagaaaga i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122935493 323 - 135778131 ttcctgaagacccttcagtgaggcaagatgcagaggtggaagacagtgatattgatgattctgaccccatgtacgcctaagctaatgtgcatgtttttgtcttcatttttaac-aaaaagttcaaaaagttttaaaaagattaaatagaaacaaaaagcttaaacaaaggaacagaaagaaagaaaataagtttgtacggttgtacaagtatttgtattttaag----ttaagtgttattacaaaagagtttaaaagtttaaaaattaaaaagtgtataaagtaaaaatgttacagcaagctaagggtaatttattattgaagaaaga i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2047985 324 + 2427316 ttcctgaagacccttcagtggggcaagatgcagaggtggaaaacagtggtattgatgattctgaccccatgtacgcctaagctaatgtgcatgtttttgtcttcatttttaacaaaaaagttcaaaaagttttaaaaagattaaatagaaacaaaaagcttatacaaaggaacagaaagaaagaaaataagtttgtacagttgtacaagtatttgtattttaag----ttaagtgttattacaaaagagtttaaaagtttaaaaatttaaaagtgtataaagtaaaaacgttacagcaagctaagggtaatttattattgaagaaaga i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1343409 324 + 1448899 ttcccgaagactcttcagtggggcaagatgcagaggtggaagacagtaatattgatgattctgaccccatgtacgcctaagctaatgtgcatgtttttgtcttcatttttaacaaaaaagttcaaaaagttttaaaaagattaaatagaaacaaaaagcttatacaaaggaacagaaagaaagaaaataagtttgtacagttgtacaagtatttgtattttaag----ctaagtgttattacaaaagagtttaaaagtttaaaaattaaaaagtgtataaagtaaaaatgttacagcaagctaagggtaatttattattgaagaaaga i colAng1.NW_012119221v1 C 0 C 0 s otoGar3.GL873602 8646583 284 + 8790067 cccctgaagaccttcccatggcacaagatgtgaaagtggaagacagtagtactgatgattctgaccccatggaggtctacactaatgtgtgtgtttgtgtcttcatttttaacaaaaatgt----ataatttttaaa------aacagaaa-aaacagtttct--------------------gaaataaggatgcacaat-------gtgtttgcattttaagctaactaaatgttattacaaaagagtaaaaaagttaga------aaaaatgtataaagttaaaaggttacagtaagttatggttaatttattattgaagacaga i otoGar3.GL873602 I 117 I 278 e proCoq1.NW_012140747v1 1894974 2195 + 4188776 I e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e aotNan1.NW_018493494v1 9419963 868 - 11631747 I e cebCap1.NW_016107439v1 7002191 868 - 7304997 I e saiBol1.JH378162 8215377 750 - 15139346 I e calJac3.chr3 53049565 915 - 190850796 I e canFam3.chr13 48032348 0 + 63241923 C a score=636880.000000 s hg38.chr4_KI270787v1_alt 96376 108 + 111943 gtctggcacagtgtctcatgcctatcatcccagctactcaggaggctgaggtgggaggattgccagaagttctagaccagcctgggcaacacagcaagaccttgtctc s panTro5.chr4 119663632 108 - 194502333 gtctggcacagtggctcatgcctatcatcctagctactcaggaggctgaggtgggaggattgccagaaattctagaccagcctgggcaacacagcaagaccttgtctc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077452 108 - 195804263 gtctggcacagtggctcatgcctatcatcctagctactcaggaggctgaggtgggaggattgccagaaattctagaccagcctgggcaacacagcaagaccttgtctc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506451 108 - 17550833 gtctggcacagtggctcatgcctatcatcccagctactcaggaggctgaggtgggaggattgccagaagttctagaccagcctgggcaacacagcaagaccttgtctc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378382 108 - 118206036 gtctggcatagtggctcatgcctatcatcccagctactcaggaggcggaggtaggaggattgccagaagttctagacaagcctgggcaacacagcaagaccttctctc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111589330 108 - 190429646 gtctggcacagtggctcatgcctatcatcccagctactcagcagactgaggtgggaggattgccagaagttctagggcagcctgggcaacacagcaagaccttgtctc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110758510 108 - 189454096 gtctggcacagtggctcatgcctatcatcccagctactcagcagactgaggtgggaggattgccagaagttctagggcagcctgggcaacacagcaagaccttgtctc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13324938 108 + 26754465 gtctggcacagtggctcatgcctatcatcccagctactcagcagactgaggtgggaggattgccagaagttctagggcagcctgggcaacacagcaagaccttgtctc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4226407 108 - 5137665 gtctggcacagtggctcatgcctatcatcccagctactcagcaggctgaggtgggaggattgccagaagttctagggcagcctgggcaacacagcaagaacttgtctc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122935816 108 - 135778131 gtctggcacagtggctcatgcctatcatcccagctactcaggaggctgaggtgggaggattgccagaagttctagagcagcctgggcaacacagcaagaccttgtctc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2048309 108 + 2427316 gtctggcacagtggctcatgcctatcatcccagctactcagcaggctgaggtgggaggattgccagaagctctagggcagcctgggcaacacagcaagaacttgtctc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1343733 108 + 1448899 gtctggcacagtggctcatgcctatcatcccagctactcaggaggctgaggtgggaggattgccagaagttctagagcagcctgggcaacacagcaagaccttatctc i colAng1.NW_012119221v1 C 0 C 0 e proCoq1.NW_012140747v1 1894974 2195 + 4188776 I e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e aotNan1.NW_018493494v1 9419963 868 - 11631747 I e cebCap1.NW_016107439v1 7002191 868 - 7304997 I e saiBol1.JH378162 8215377 750 - 15139346 I e calJac3.chr3 53049565 915 - 190850796 I e otoGar3.GL873602 8646867 278 + 8790067 I e canFam3.chr13 48032348 0 + 63241923 C a score=92747.000000 s hg38.chr4_KI270787v1_alt 96484 24 + 111943 a--------------------------------aaaaaagaaagaaaGAA---AACAAC s panTro5.chr4 119663740 24 - 194502333 a--------------------------------aaaaaagaaagaaagaa---aacaac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077560 24 - 195804263 a--------------------------------aaaaaagaaagaaaGAA---AACAAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506559 27 - 17550833 a--------------------------------aaaaaagaaagaaaGAAAACAACAAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378490 24 - 118206036 a--------------------------------aaaaaggaaagaaaGAA---aacaac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111589438 24 - 190429646 a--------------------------------aaaaaaggaaggaagga---atgaag i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110758618 24 - 189454096 a--------------------------------aaaaaaggaaggaagga---atgaag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13325046 24 + 26754465 a--------------------------------aaaaaaggaaggaagga---atgaag i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4226515 24 - 5137665 a--------------------------------aaaaaaagaaggaagga---aggaag i cerAty1.NW_012001307v1 C 0 I 57 s chlSab2.chr7 122935924 24 - 135778131 a--------------------------------aaggaaggaaggaagga---aggaag i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2048417 56 + 2427316 aaaaaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagga---aggaag i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1343841 24 + 1448899 a--------------------------------aaaaaaggaaggaagga---gggaag i colAng1.NW_012119221v1 C 0 I 73 s saiBol1.JH378162 8216127 24 - 15139346 a--------------------------------aagaaagaaagaaagag---aaagGA i saiBol1.JH378162 I 750 C 0 e proCoq1.NW_012140747v1 1894974 2195 + 4188776 I e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e aotNan1.NW_018493494v1 9419963 868 - 11631747 I e cebCap1.NW_016107439v1 7002191 868 - 7304997 I e calJac3.chr3 53049565 915 - 190850796 I e otoGar3.GL873602 8646867 278 + 8790067 I e canFam3.chr13 48032348 0 + 63241923 C a score=2381.000000 s hg38.chr4_KI270787v1_alt 96508 2 + 111943 Aa- s panTro5.chr4 119663764 2 - 194502333 aa- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077584 2 - 195804263 AA- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506586 2 - 17550833 Aa- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378514 2 - 118206036 aa- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111589462 2 - 190429646 ga- i rheMac8.chr5 C 0 I 58 s macFas5.chr5 110758642 2 - 189454096 ga- i macFas5.chr5 C 0 I 53 s macNem1.NW_012012466v1 13325070 2 + 26754465 ga- i macNem1.NW_012012466v1 C 0 I 44 s chlSab2.chr7 122935948 2 - 135778131 ga- i chlSab2.chr7 C 0 I 1 s manLeu1.NW_012104388v1 2048473 2 + 2427316 ga- i manLeu1.NW_012104388v1 C 0 I 1 s colAng1.NW_012119221v1 1343938 2 + 1448899 aa- i colAng1.NW_012119221v1 I 73 C 0 s saiBol1.JH378162 8216151 2 - 15139346 -AG i saiBol1.JH378162 C 0 C 0 e proCoq1.NW_012140747v1 1894974 2195 + 4188776 I e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e aotNan1.NW_018493494v1 9419963 868 - 11631747 I e cebCap1.NW_016107439v1 7002191 868 - 7304997 I e calJac3.chr3 53049565 915 - 190850796 I e otoGar3.GL873602 8646867 278 + 8790067 I e canFam3.chr13 48032348 0 + 63241923 C e cerAty1.NW_012001307v1 4226539 57 - 5137665 I a score=-17288.000000 s hg38.chr4_KI270787v1_alt 96510 4 + 111943 -caa-c s panTro5.chr4 119663766 4 - 194502333 -caa-c i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077586 4 - 195804263 -CAA-C i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506588 4 - 17550833 -caa-c i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378516 4 - 118206036 -caa-c i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110758697 3 - 189454096 -gga-- i macFas5.chr5 I 53 C 0 s macNem1.NW_012012466v1 13325116 1 + 26754465 ---a-- i macNem1.NW_012012466v1 I 44 C 0 s chlSab2.chr7 122935951 3 - 135778131 -gga-- i chlSab2.chr7 I 1 I 31 s manLeu1.NW_012104388v1 2048476 3 + 2427316 -gga-- i manLeu1.NW_012104388v1 I 1 I 31 s colAng1.NW_012119221v1 1343940 4 + 1448899 -ggaa- i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8216153 4 - 15139346 GAAG-- i saiBol1.JH378162 C 0 C 0 e proCoq1.NW_012140747v1 1894974 2195 + 4188776 I e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e aotNan1.NW_018493494v1 9419963 868 - 11631747 I e cebCap1.NW_016107439v1 7002191 868 - 7304997 I e calJac3.chr3 53049565 915 - 190850796 I e otoGar3.GL873602 8646867 278 + 8790067 I e canFam3.chr13 48032348 0 + 63241923 C e cerAty1.NW_012001307v1 4226539 57 - 5137665 I e rheMac8.chr5 111589464 58 - 190429646 I a score=9328.000000 s hg38.chr4_KI270787v1_alt 96514 2 + 111943 aa s panTro5.chr4 119663770 2 - 194502333 aa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077590 2 - 195804263 Aa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506592 2 - 17550833 aa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378520 2 - 118206036 aa i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110758700 2 - 189454096 ag i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13325117 2 + 26754465 aa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4226596 2 - 5137665 aa i cerAty1.NW_012001307v1 I 57 C 0 s chlSab2.chr7 122935985 2 - 135778131 aa i chlSab2.chr7 I 31 I 3 s manLeu1.NW_012104388v1 2048510 2 + 2427316 aa i manLeu1.NW_012104388v1 I 31 I 12 s colAng1.NW_012119221v1 1343944 2 + 1448899 aa i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8216157 2 - 15139346 GA i saiBol1.JH378162 C 0 C 0 e proCoq1.NW_012140747v1 1894974 2195 + 4188776 I e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e aotNan1.NW_018493494v1 9419963 868 - 11631747 I e cebCap1.NW_016107439v1 7002191 868 - 7304997 I e calJac3.chr3 53049565 915 - 190850796 I e otoGar3.GL873602 8646867 278 + 8790067 I e canFam3.chr13 48032348 0 + 63241923 C e rheMac8.chr5 111589464 58 - 190429646 I a score=215824.000000 s hg38.chr4_KI270787v1_alt 96516 42 + 111943 caacaaaaaccctagctgagtgcggtagtatgtgcctgaagt s panTro5.chr4 119663772 42 - 194502333 caacaaataccctagctgagtgcggtggtatgtgcctgaagt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077592 42 - 195804263 caacaaataccttagctgagtgcggtggtatgtgcctgaagt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506594 42 - 17550833 caacaaaaaccctagctgagtgtggtggtatgtgcctgaagt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378522 41 - 118206036 caacaGAAACC-TAgctgagtgtggtggtacgtgcccgaagt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111589522 42 - 190429646 gaaaaaaaaaactagctgagtgtgatgggacatgcctgaagt i rheMac8.chr5 I 58 C 0 s macFas5.chr5 110758702 42 - 189454096 gaaaaaaaaaactagctgagtgtgatgggacatgcctgaagt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13325119 42 + 26754465 aaaaaaaaaaactagctgagtgtgatgggacatgcctgaagt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4226598 42 - 5137665 ggaaAAAAAAACTAgctgagtgtggtgggacatgcctgaagt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122935990 42 - 135778131 aggaaAAAAACCtagctgagtgtggtgggacatgcctgaagt i chlSab2.chr7 I 3 C 0 s manLeu1.NW_012104388v1 2048524 42 + 2427316 ggaaAAAAAAACTAgctgagtgtggtgggacatgcctgaagt i manLeu1.NW_012104388v1 I 12 C 0 s colAng1.NW_012119221v1 1343946 42 + 1448899 aaaaaaaaaaACTAgctgagtgtggtgggacgtgcctgaagt i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8216159 39 - 15139346 ---AGACAAACCTAgttgggtgtggtggtacacgcctgaagt i saiBol1.JH378162 C 0 I 4 e proCoq1.NW_012140747v1 1894974 2195 + 4188776 I e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e aotNan1.NW_018493494v1 9419963 868 - 11631747 I e cebCap1.NW_016107439v1 7002191 868 - 7304997 I e calJac3.chr3 53049565 915 - 190850796 I e otoGar3.GL873602 8646867 278 + 8790067 I e canFam3.chr13 48032348 0 + 63241923 C a score=427025.000000 s hg38.chr4_KI270787v1_alt 96558 46 + 111943 cctagcaactcaagaggctgagatgggaagatgccttgggtccagg s panTro5.chr4 119663814 46 - 194502333 cctagcaactcaagaggctgagatgggaagatgccttgggtccagg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077634 46 - 195804263 cctagcaactcaagaggctgagatgggaagatgccttgggtccagg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506636 46 - 17550833 cctagcaactcaagaggctgagatgggaagatgccttgggtccagg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378563 46 - 118206036 cctagctactcaagagcctgagatgggaagatgccttgggtccagg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111589564 46 - 190429646 cctagctactcaagaggctgaggtgggaagatgccttgggtccggg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110758744 46 - 189454096 cctagctactcaagaggctgaggtgggaagatgccttgggtccggg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13325161 46 + 26754465 cctagctactcaagaggctgaggtgggaagatgccttgggtctggg i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4226640 46 - 5137665 cctagctactcaagaggctgaggtgggaagatgccttgggtccggg i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122936032 46 - 135778131 cctagctactcaagaggctgaggtgggaagatgccttgggtccagg i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2048566 46 + 2427316 cctagctactcaagaggctgaggtgggaagatgccttgggtccggg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1343988 46 + 1448899 cctagctactcaagaggctgaggtgggaagatgccttgggtccagg i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8216202 46 - 15139346 cctagctactcaagaggctgaggtgggaagatcccttgggtccagg i saiBol1.JH378162 I 4 C 0 s cebCap1.NW_016107439v1 7003059 46 - 7304997 cctagctactcaagaggctgaggtgggaagatcccttgggtccagg i cebCap1.NW_016107439v1 I 868 C 0 s aotNan1.NW_018493494v1 9420831 46 - 11631747 cctagctacgcaagaggctgaggtgggaagatcccttgggtccagg i aotNan1.NW_018493494v1 I 868 C 0 e proCoq1.NW_012140747v1 1894974 2195 + 4188776 I e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e calJac3.chr3 53049565 915 - 190850796 I e otoGar3.GL873602 8646867 278 + 8790067 I e canFam3.chr13 48032348 0 + 63241923 C a score=879931.000000 s hg38.chr4_KI270787v1_alt 96604 96 + 111943 agttcgaggctgaagcaagctactgccattgctcttcagcctgggcaacaccacaagatcccatctct-aaaaaatataaagaaag-aaaaaaattaa s panTro5.chr4 119663860 97 - 194502333 agttcaaggctgaagcaagctactgccattactcttcagcctgggcaacaccacaagatcccatctct-aaaaaatataaagaaagaaaaaaaattaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077680 97 - 195804263 agttcaaggctgaagcaagctactgccattgctcttcagcctgggcaacaccacaagatcccatctct-aaaaaatataaagaaagaaaaaaaattaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506682 97 - 17550833 agttcgaggctgaagcaagctactgccattgctcttcggcctgggcaacaccacaagatcccatctct-aaaaaatataaagaaagaaacaaatttaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378609 96 - 118206036 agtttgaggctgaagcaagctactgccgttgcacttcagcctgggcaacaccacaagatcccatctct-aaaaaatataaagaagg-aaaaaaaGtaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111589610 97 - 190429646 agtttgaggctgaagaaagctactgccactgtacttcagcctgggtaacaccacaatatcccgtctct-aaaaaatataaagagggaaaacaatttaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110758790 97 - 189454096 agtttgaggctgaagaaagctactgccactgtacttcagcctgggtaacaccacaatatcccgtctct-aaaaaatataaagagggaaaacaatttaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13325207 97 + 26754465 agtttgaggctgaagaaagctactgccactgtacttcagcctgggtaacaccacaatatcccgtctct-aaaaaatataaagagggaaaacaatttaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4226686 97 - 5137665 agtttgaggctgaagaaagctactgccactgtacttcagcctgggtaacaccacaatatcccgtctct-aaaaaatataaagaaggaaaaCAAtttaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122936078 97 - 135778131 agtttgaggctgaggaaagctgctgtcactgtacttcagcctgggtaacaccacaatatcccatctct-aaaaaatataaagaaggaaaaaaatttaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2048612 97 + 2427316 agtttgaggctgaagaaagctactgccactgtacttcagcctgggtaacaccacaatatcccgtctct-aaaaaatataaagaaggaaaaCAAtttaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1344034 97 + 1448899 agtttgaggctgaagcaagctactgccactgtacttcagcctgggtaacaccacaatatcccgtctct-aaaaaatataaagaaggaaaaaaatttaa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53050480 96 - 190850796 agtttgaggctgaagcaagctactgccactgcactacagcctgggaaacacagcaagatcccatctct-aaaaaatataaagaagg-gaaaaaaatta i calJac3.chr3 I 915 C 0 s saiBol1.JH378162 8216248 97 - 15139346 agtttgaggctgaagcaagctactgccactgcactatagcctgggcaacacagcaagatcccattgctaaaaaaatataaagaagg-aaaaaaaataa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7003105 96 - 7304997 agtttgaggctgaagcaagctactgccactgcaccacagcctgggcaacacagcaagatcccatctct-aaaaaatataaagaagg-aaaaaaattaa i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9420877 96 - 11631747 agtttgaggctgaagcaagctactgccactgcactacagccttggcaacacagcaagatcccatctct-aaaaaatataaagaagg-aaaaaaattaa i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1894974 2195 + 4188776 I e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e otoGar3.GL873602 8646867 278 + 8790067 I e canFam3.chr13 48032348 0 + 63241923 C a score=103029.000000 s hg38.chr4_KI270787v1_alt 96700 10 + 111943 ataaatgtaa s panTro5.chr4 119663957 10 - 194502333 ataaatgtaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077777 10 - 195804263 ataaatgtaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506779 10 - 17550833 ataaatgtaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378705 10 - 118206036 ataaatgtaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111589707 10 - 190429646 ataaatataa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110758887 10 - 189454096 ataaatataa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13325304 10 + 26754465 ataaatataa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4226783 10 - 5137665 ataaatataa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122936175 10 - 135778131 ataaatgtaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2048709 10 + 2427316 ataaatataa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1344131 10 + 1448899 ataaatataa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53050576 10 - 190850796 ataagtttaa i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8216345 10 - 15139346 ataaatttaa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7003201 10 - 7304997 ataaatttaa i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9420973 10 - 11631747 ataaatttaa i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1897169 10 + 4188776 ataaatttag i proCoq1.NW_012140747v1 I 2195 C 0 e micMur3.chrUn_NW_017968520v1 1806482 645 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e otoGar3.GL873602 8646867 278 + 8790067 I e canFam3.chr13 48032348 0 + 63241923 C a score=3613825.000000 s hg38.chr4_KI270787v1_alt 96710 326 + 111943 tgtagcctaagtttaaagtgtttataaagtttaaaacagtgtacagtaatgtcctaggccttcacagtcactcactactcattcagagactcacccagagcaacttccagttctgtaagct-cattca-tagtaagtgccctatacaggtgtgccatttttaatcttttatactctatttttactgtatcttttctatgtttcgatgtgtttagatacacaaataa-taacattgtgttataattgcctacagtattcagtacagtaacatgctatacagtcttacagcct-gaagcaataggctacaccatatagcctagggatgtggt s panTro5.chr4 119663967 326 - 194502333 tgtagcctaagtttaaagtgtttataaagtttaaagcagtgtacagtaatgtcctaggccttcacagtcactcactactcattcagagactcacccagagcaacttccagttctgtaagct-cattca-tagtaagtgccctatacaggtgtgccatttttaatcttttatactctatttttactgtatcttttctatgtttcgatatgtttagatacacaaataa-taacgttgtgttataattgcctacagtattcagtacagtaacatgctatacagtcttacagcct-gaagcaataggctacaccatatagcctagggatgtggt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121077787 326 - 195804263 tgtagcctaagtttaaagtgtttataaagtttaaagcagtgtacagtaatgtcctaggccttcacagtcactcactactcattcagagactcacccagagcaacttccagttctgtaagct-cattca-tagtaagtgccctatacaggtgtgccatttttaatcttttatactctatttttactgtatcttttctatgtttcgatatgtttagatacacaaataa-taacgttgtgttataattgcctacagtattcagtacagtaacatgctatacagtcttacagcct-gaagcaataggctacaccatatagcctagggatgtggt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4506789 327 - 17550833 tgtagcctaagtttaaagtgtttataaagtttaaagcagtgtacagtaatgtcctaggccttcacagtcactcactactcattcagagactcacccagagcaacttccagttctgtaagct-cattca-tagtaagtgccctatacaggtgtgccatttttaatcttttatactctatttttactgtatcttttctatgttttgatatgtttagatacacaaataa-taacattgtgttataattgcctacagtattcagtacagtaacatgctatacagtcttacagcctagaagcaataggctacaccatataacctagggatgtggt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69378715 327 - 118206036 tgtagcctaagtttaaagtgttcataaagtttaaagcagtgtaaagtcatgtcctaggccttcacattcactcactactcatttagagactcacccagagcaacttccagttctgtaagct-cattca-tagtaagtgccctgtacaggtgtgccatttttaatcttttagactctatttttactgtatcttttctatgttttgatatgcttagatacacaaataa-taacattgtgttataattgcctacagtattcagtacagtaacatgctatacagtcttatagcctaggagcaataggctataccacatagcttagggatgtggt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111589717 318 - 190429646 tgtagcctaagttcacagtgtttataaagtctaaagcagtgtacagtaatgtcctaggccttcacattcactcactactcattcagtgactcacccagagcaacttccagttctgtaagctccattca-tagtaagtgccctatacaggtgtgccatttctaatcttttaaactgtatttttactgtaacttgtc----------tatgtttagatacacaaataa-taacattgtgttatgattgcctacagtattcagtacagtaacatgctattcaggtttatagcccagaagcaataagctatatcatatagcctagggatgtggt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110758897 318 - 189454096 tgtagcctaagttcacagtgtttataaagtctaaagcagtgtacagtaatgtcctaggccttcacattcactcactactcattcagtgactcacccagagcaacttccagttctgtaagctccattca-tagtaagtgccctatacaggtgtgccatttctaatcttttaaactgtatttttactgtaacttgtc----------tatgtttagatacacaaataa-taacattgtgttatgattgcctacagtattcagtacagtaacatgctattcaggtttatagcccagaagcaataagctatatcatatagcctagggatgtggt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13325314 318 + 26754465 tgtagcctaagttcacagtgtttataaagtctaaagcagcgtacagtaatgtcctaggccttcacattcactcactactcattcagtgactcacccagagcaacttccagttctgtaagctccattca-tagtaagtgccctatacaggtgtgccatttctaatcttttaaactgtatttttactgtaacttgtc----------tatgtttagatacacaaataa-taacattgtgttatgattgcctacagtattcagtacagtaacatgctattcaggtttatagcccagaagcaataagctatatcatatagcctagggatgtggt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4226793 328 - 5137665 tgtagcctaagttcacagtgtttataaagtctaaagcagtgtacagtaatgtcctaggccttcacattcactcactactcattcagtgactcacccagagcaacttccagttctgtaagctccattca-tagtaagtgccctgtacaggtgtgccatttctaatcttttaaactgtatttttactgtaacttgtctatgtttccgtatgtttagatacacaaataa-taacattgtgttatgattgcctacagtgttcagtacagtaacatgctattcaggtttatagcccagaagcaataagctatatcatatagcctagggatgtggt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122936185 328 - 135778131 tgtagcctaagtttacagtgtttataaagtctaaagcagtgtacagtaatgtcctaggccttcacattcactcactactcattcagtgactcacccagagcaacttccagttctgtaagctccattca-tagtaagtgccctatacaggtgtgccatttttaatcttttaaactgtatttttactgtatcttgtctatgtttccatatgtttagatacacaaataa-taacattgtgttatgactgcctacagtattcagtacggtaacatgctattcaggtttatagcccagaagcaataagctatatcatatagcctagggatgcggt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2048719 328 + 2427316 tgtagcctaagttcacagtgtttataaagtctaaagcagtgtacagtaatgtcctaggccttcacattcactcactactcattcagtgactcacccagagcaacttccagttctgtaagctccattca-tagtaagtgccctgtacagatgtgccatttctaatcttttaaactgtatttttactgtaacttgtctatgtttccatatgtttagatacacaaataa-taacattgtgttatgattgcctacagtattcaatacagtaacatgctattcaggtttatagcccagaagcaataagctatatcatatagcctagggatgtggt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1344141 327 + 1448899 tgtagcctaagtttacagtgtttataaagtctaaagcagtgtacagtaatgtcctaggccttcacattcactcactactcattcagtgactcacccagagcaacttccagttctgtaagctccattca-tagtaagtgccctatacagatgtgccatttttaatcttttaaactgtatttttactgtattttgtctttgtttccatatgtttagatacacaaataa-taacattgtgttatgattgcctacagtattcagtacagtaacatgctattcagg-ttatagcccagaagcaataagctatatcatatagcctagggatgtggt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53050586 312 - 190850796 tgtagcctaggtttacagtgctta-aa-gtttaaagcagagtacgctaatgtcctaggccttaacattcacttgctactcattcagtgactcacccagagcaacttccagttctgtaagctccattcattagtaagtaccccat----atgtgccatttttaa-tgtttatactgtatttttactgtatcttttc----------tgtgtttagatatataaataa-taacactgtgttataattgtctacagtattcagtaaagtgacatgctgcccaggtttttggcctagaagcaacaggctataccatatagcctagggatgtagt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8216355 315 - 15139346 cgtagcctaagtttacagtgttta-aaggtttaaagcagagtacaccaatgtcccaggccttaacattcactcacgactcattcagtgactcacccagagcaactcccagttctgtaagctccattca-tagtaagttccctatgc--gtgtgccattttaaattttttatactgcatttttactgtatcttttc----------tgtgtttagatatataaataa-taacattgcattataattgcctacagtattcagtaaagtaacatgctgcacaggtttttggcctggaagcaataggctataccatataacctagggatgtagt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7003211 280 - 7304997 cgtagcctaagtgtacagtgttta-aaagtttaaagcagagtacactaatgtcctaggctttaacattcactcactac----tcagtgactcacccagagcaacttccagttctgtaagctccattca-tagtaagtaccctatac--atgtgccatttttaa-tttttatactgtatttttactgcatcttttc----------tatctttagatatataaataa-taacattgtgttataattgcctacagttttcagtaaagtaacaggctgcacaggtttttggcctagaagc------------------------------agt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9420983 315 - 11631747 tgtagcctaagtttacagtgttta-aaagtttaaagcagagtacactaatgtcctaggccttaacattcactcactactcatccagtaactcacccagagcaactttcagttccgtaagctccattca-tagtaagcaccctatac--gtgtgccatttttaattttttatactgtatttttactgtatcttttc----------tatgtttagatatataagtaa-taacattgtgttataattgcctacagtattcagtaaagtaacatgctgcacaggtttttggcctagaagcaataggctataccatatagcctagggatgtagt i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1807127 328 + 3286835 tgtagcctaagtgtgcagtgtttataaagtctacagtagtgtacagtaatgttctaggccttcacattcactcaccactcagtcactgactcacccagggcaacct-caggcttgtaagcaccattca-tggtaagtgccctgtataggtatgccattttttatcttttatattgcatttttactgtacctgttctatgtttagatatgtttagctacacaaatacttaccattgtgttacaattgcctacggtattcagtagagtaacgtgctatacaggtttatagcttaggagcagtaggccataccatatagcctagctacatagt i micMur3.chrUn_NW_017968520v1 I 645 I 39 s proCoq1.NW_012140747v1 1897179 325 + 4188776 tgtagcctaagtgtacagtgtttataaagtctacagtagtgtacagaaatgtcctaggccttcacattcactcaccac----tcactgacccacccagagcaacctccagtcttgtaagctccattca-tggtaagtgccctgtataggtatgccattttttatcttttatattgcatttttactgtatctgttctatgtttagatatgtttagctacacaaatacttgccattgtgttacaattgcctatggtattcagtacagtaatgtgctgtacaggtttgtagcctaggagcaataggctacaccatatagcctagctctgtagt i proCoq1.NW_012140747v1 C 0 C 0 e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e otoGar3.GL873602 8646867 278 + 8790067 I e canFam3.chr13 48032348 0 + 63241923 C a score=433096.000000 s hg38.chr4_KI270787v1_alt 97036 40 + 111943 aggctataccatccaggtttgtgtaagtccactccacgat s panTro5.chr4 119664293 40 - 194502333 aggctataccatccaggtttgtgtaagtccactccacgat i panTro5.chr4 C 0 C 0 s panPan2.chr4 121078113 40 - 195804263 aggctataccatccaggtttgtgtaagtccactccacgat i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4507116 40 - 17550833 aggctataccatccaggtttgtgtaagtccactccacgat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69379042 40 - 118206036 aggctgtaccatccaggtttgtgtaagtccactccatgat i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111590035 40 - 190429646 aggctatatcatctaggtttgtgtaagtccactccatgat i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110759215 40 - 189454096 aggctatatcatctaggtttgtgtaagtccactccatgat i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13325632 40 + 26754465 aggctatatcatctaggtttgtgtaagtccactccatgat i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4227121 40 - 5137665 aggctatatcatctaggtttgtgtaagtccactccatgat i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122936513 39 - 135778131 aggctagatcatctaggtttgtgtgagtccactccatg-t i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2049047 40 + 2427316 aggctatatcatctaggtttgtgtaagtccactccatgat i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1344468 40 + 1448899 aggctatatcatctaggtttgtgtaagtccactccatgat i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53050898 40 - 190850796 aggctataccatctaggtttatgtaagtccagtctacgat i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8216670 40 - 15139346 aggctataccatctaggtttgtgtaagtcctctctatgat i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7003491 40 - 7304997 aggctataccatctaggtttgtgtaagtcctctctatgac i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9421298 40 - 11631747 aggctataccacctaggtttgtgtaagtccactctatgat i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1897504 40 + 4188776 tagctataccatctagttttgtgtcagtacatcctatgat i proCoq1.NW_012140747v1 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1807455 39 + 3286835 I e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e otoGar3.GL873602 8646867 278 + 8790067 I e canFam3.chr13 48032348 0 + 63241923 C a score=834690.000000 s hg38.chr4_KI270787v1_alt 97076 72 + 111943 gtttgcacaatgataaaatcacctaatgacacatttctgaaaacatatccccatcgttaagcaacacatg--ac s panTro5.chr4 119664333 72 - 194502333 gtttgcacaatgataaaatcacctaatgacacatttctgaaaacatatccccatcgttaagcaacacatg--ac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121078153 72 - 195804263 gtttgcacaatgataaaatcacctaatgacacatttctgaaaacatatccccatcgttaagcaacacatg--ac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4507156 72 - 17550833 gtttgcacaatgataaaatcacctaatgacacatttctgaaaacatatccccatcgttaagcaacacatg--ac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69379082 74 - 118206036 gtttgcacaatgacaaaatcacctaatgacacatttctgaaaacatatacccatcgttaagcaacacatgTAAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111590075 72 - 190429646 gtttgcacaatgacaaaatcacctaatgacacatttcttaaaacatatccccattgttaagcaacatgtg--ac i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110759255 72 - 189454096 gtttgcacaatgacaaaatcacctaatgacacatttcttaaaacatatccccatcgttaagcaacatgtg--ac i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13325672 72 + 26754465 gtttgcacaatgacaaaatcacctaatgacacatttcttaaaacatatccccatcgttaagcaacatgtg--ac i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4227161 72 - 5137665 gtttgcacaatgacaaaatcacctaatgacacatttcttaaaacatatccccatcgttaagcaacatgtg--ac i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122936552 71 - 135778131 gtttgcacaatgacaaaatcacctaatgacacatttcttaaaacata-ccccttcgttaagcaacatgtg--ac i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2049087 72 + 2427316 gtttgcacaatgacaaaatcacctaatgacacatttcttaaaacatatccccatcgttaagcaacatgtg--ac i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1344508 72 + 1448899 gtttgcacaatgacaaaatcacctaatgacacatttcttaaaacatatccccatcattaagcaacacatg--ac i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53050938 71 - 190850796 gtttgcacaatgacaaaatcacctaatgacacatttcttaaaacatat-cccattgttaagcaacacaca--ac i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8216710 71 - 15139346 gtttgcacaatgacaaaatcacctagtgacacatttcttaaaacatat-cccattgttaagcaacacatg--ac i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7003531 71 - 7304997 gtttgcacaatgacaaaatcacctaatgacacactttttaaaacatat-cccattgttaagcaacacatg--ac i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9421338 71 - 11631747 gtttgcacaatgacaaaatcacctaatgacacatttctcaaaacatat-cccactgttaagcaacacatg--ac i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1807494 72 + 3286835 gtttacatcacaacaaaatcagctaaagatgcatttctcaaaaggaattccccttgttaagcaaagcatg--ac i micMur3.chrUn_NW_017968520v1 I 39 C 0 s proCoq1.NW_012140747v1 1897544 72 + 4188776 gtttacaccacaacaaaatctgctaatgatgcatttctcagaaggtattccccttgttaagcaaagcatg--ac i proCoq1.NW_012140747v1 C 0 C 0 e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e otoGar3.GL873602 8646867 278 + 8790067 I e canFam3.chr13 48032348 0 + 63241923 C a score=15561.000000 s hg38.chr4_KI270787v1_alt 97148 1 + 111943 t s panTro5.chr4 119664405 1 - 194502333 t i panTro5.chr4 C 0 C 0 s panPan2.chr4 121078225 1 - 195804263 t i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4507228 1 - 17550833 t i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69379156 1 - 118206036 T i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111590147 1 - 190429646 t i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110759327 1 - 189454096 t i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13325744 1 + 26754465 t i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4227233 1 - 5137665 t i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122936623 1 - 135778131 t i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2049159 1 + 2427316 t i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1344580 1 + 1448899 t i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53051009 1 - 190850796 t i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8216781 1 - 15139346 t i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7003602 1 - 7304997 t i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9421409 1 - 11631747 t i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1807566 1 + 3286835 t i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1897616 1 + 4188776 t i proCoq1.NW_012140747v1 C 0 C 0 s canFam3.chr13 48032348 1 + 63241923 T i canFam3.chr13 C 0 C 0 e mm10.chr5 76449897 2 + 151834684 I e dasNov3.JH568349 4128949 0 - 5279953 C e otoGar3.GL873602 8646867 278 + 8790067 I a score=70195.000000 s hg38.chr4_KI270787v1_alt 97149 5 + 111943 ATATG s panTro5.chr4 119664406 5 - 194502333 ATATG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121078226 5 - 195804263 ATATG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4507229 5 - 17550833 ATATG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69379157 5 - 118206036 ATATG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111590148 5 - 190429646 ATATG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110759328 5 - 189454096 ATATG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13325745 5 + 26754465 ATATG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4227234 5 - 5137665 ATATG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122936624 5 - 135778131 ATATG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2049160 5 + 2427316 ATATG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1344581 5 + 1448899 ATATG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53051010 5 - 190850796 ATATG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8216782 5 - 15139346 ATATG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7003603 5 - 7304997 AAATG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9421410 5 - 11631747 gTATG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1807567 5 + 3286835 gTTTG i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1897617 5 + 4188776 gTTTG i proCoq1.NW_012140747v1 C 0 C 0 s canFam3.chr13 48032349 5 + 63241923 ATATG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4128949 5 - 5279953 ATATG i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76449897 2 + 151834684 I e otoGar3.GL873602 8646867 278 + 8790067 I a score=6107989.000000 s hg38.chr4_KI270787v1_alt 97154 475 + 111943 TAAATTTTATACTGAAATATAAGAAAAGCCTATGAACAC---TAACTACTTATAGATATATTGATTTATTTTTTGTTTTTATTCTCCATTTAAAACATTAGATTTGAATGAATATCAATGTTAATTTTTATTG------------------------------------------------AAAGAACTAATGCTTAATGAAAGTAACTCTCCACTAAAACTTTTGGATATCCACAATTTTTTAAA-TGAGACTTCATGTTAATGCCACACTATTAAACTTTTTCCA--AAAGAGTCACAT----ACTCAACAGATTTTATgttagaga--tttctgaatttcagacaacagaattcactctgattagtttaag--aacaaaag------gatttactgcaggt--agcaggtcactta-cagaatctttggaaagATTTGTAAAGTGGTTTCTAGTCCAAACTTCCAGCAACAACTCTGGTGAAGATGCTGGGCAGACCTCAGAACCACAACGTCTCCACCATAGTTAGGAAG--G-----GGGCCAGGGGC s panTro5.chr4 119664411 472 - 194502333 TAAATTTTATACTGAAATATAAGAAAAGCCTATGAACAC---TAACTACTTATAGATATATTGATTTATTTTTTGTTTTTATTCTCCATTTAAAACATTAGATTTGAATGAATATCAATGTTAATTTTTATTG------------------------------------------------AAATAACTAATGCTTAATGAAAGTAACTCTCCACTAAAACTTTTGGATATCCACAATTTTTTAAA-TGAGACTTCATGTTAATGCCACACTATTAAACTTTTTCCA--AAAGAGTCACAT----ACTCAACAGATTTTATgttagaga--tttctgaatttcagacaacataattcactctgattagtttaag--aacaaaag------gatttactgcaggt--agcaggtcactta-cagaatctttggaaagATTTGTAAAATGGTTTCTAGTCCAAACTTCCAGCAACAACTCTGGTGAAGATGCTGGGCAGACCTCAGAACC---ACGTCTCCACCATAGTTAGGAAG--G-----GGGCCAGGGGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121078231 471 - 195804263 TAAA-TTTATACTGAAATATAAGAAAAGCCTATGAACAC---TAACTACTTATAGATATATTGATTTATTTTTTGTTTTTATTCTCCATTTAAAACATTAGATTTGAATGAATATCAATGTTAATTTTTATTG------------------------------------------------AAAGAACTAATGCTTAATGAAAGTAACTCTCCACTAAAACTTTTGGATATCCACAATTTTTTAAA-TGAGACTTCATGTTAATGCCACACTATTAAACTTTTTCCA--AAAGAGTCACAT----ACTCAACAGATTTTATgttagaga--tttctgaatttcagacaacagaattcactctgattagtttaag--aacaaaag------gatttactgcaggt--agcaggtcactta-cagaatctttggaaagATTTGTAAAATGGTTTCTAGTCCAAACTTCCAGCAACAACTCTGGTGAAGATGCTGGGCAGACCTCAGAACC---ACGTCTCCACCATAGTTAGGAAG--G-----GGGCCAGGGGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4507234 473 - 17550833 TAAATTTTATACTGAAATATAAGAAAAGCCTGTGAACAC---TAACTACTTATAGATATATTGATT--TTTTTTGTTTTTATTCTCCATTTAAAACATTAGATTTGAATGAATATCAATGTTAATTTTTATTG------------------------------------------------AAAGAACTAATGCTTAATGAAAGTAACTCTCCACTAAAACTTTTGGATATCCACAATTTTTTAAA-TGAGACTTCATGTTAATGCCACACTATTAAACTTTTTCCA--AAAGAGTCACAT----ACTCAACAGATTTTATCTTAGAGA--TTTCTGaatttcagacaacagaattcactctgattcgtttaag--aacaaaag------gatttactgcaggt--agcaggtcactta-cagaatctttggaaagattcgtaaaatggtttctagtccaaacttccagcaacaactcTGGTGAAGATGCTGGGCAGAACTCAGAACCATAACGTCTCCACCTTAGTTAGGAAG--G-----GGGCCAGGGGC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69379162 470 - 118206036 TAAATTTTATACTAAAATCTAAGAAAAGCCTATGAACAG---TAACTACTTATAGACATACTGATTTATTTTTTGTTTTTATTCTCCATTTAAAACAGTAGATTTGAATGAATATCAATGTTAATTTTTGTTG------------------------------------------------AAAGAACTAATGCTTAATGA-------TCTCCACTAAAACTTTTGGATATCCACAATTTTTTAAA-TGAGACTTCATGTTAATGCTACACTATTAAACTTTTTCCA--AAAGAGTCACAT----ACTCAACGGATTTTATgttagaga--tttccgaatttcagacaacagaattcactccagctggtttaag--aacaaaag------gatttactgcaggttgagcaggttgctta-cagaatctttggaaaggtttgtaaaatggtttctagtccaaacttccagcaacaactcTGGTGAAGATGCTGGGCAGACCTCAGAACCACAACGTCTCCACCATAGTTAGGAAG--G-----GGGCCGGGGGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111590153 471 - 190429646 TATATTTGATACTGAAATCTAAGAAAAACCTGTGAACAC---TAACTACTTATAGATATATTGATTTATTTTTTGTTTTTATACTCCATTTAAACCAGTAGATTTGAATGAATATTAATGTTAATTTTTATTG------------------------------------------------AAAGAACTAATGCTTAATAAAAGTAACTCTCCACTAAAACTTTTGGATATCCACAATTTTTTAAA-TGAGACTTCACGTTAATGCTACACTATTAAACTTTTTCCA--AAGGAGTCACAT----ACTCAACAGATTTTTTGTTAGACA--Tttctgaatttcagacaacagaattcacttcaattggtttaag--aacaaaag------gatttactgcaggt--agcaggtcgctta-cagaatctttgggaaggTTTGTAAAATGGTTTCTAGTTCAAACTTCCAGCAACAACTCTGGTGAAGATGCTGGGCTGACCTCAGAATCACAATGTCTTCACCACAGTTAGGAAG--G-----GGGT----GGC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110759333 471 - 189454096 TAAATTTGATACTGAAATCTAAGAAAAACCTGTGAACAC---TAACTACTTATAGATATATTGATTTATTTTTTGTTTTTATGCTCCATTTAAACCAGTAGATTTGAATGAATATTAATGTTAATTTTTATTG------------------------------------------------AAAGAACTAATGCTTAATAAAAGTAACTCTCCACTAAAACTTTTGGATATCCACAATTTTTTAAA-TGAGACTTCACGTTAATGCTACACTATTAAACTTTTTCCA--AAGGAGTCACAT----ACTCAACAGATTTTTTGTTAGACA--Tttctgaatttcagacaacagaattcacttcaattggtttaag--aacaaaag------gatttactgcaggt--agcaggtcgctta-cagaatctttgggaaggTTTGTAAAATGGTTTCTAGTTCAAACTTCCAGCAACAACTCTGGTGAAGATGCTGGGCTGACCTCAGAATCACAATGTCTTCACCACAGTTAGGAAG--G-----GGGT----GGC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13325750 471 + 26754465 TAAATTTGATACTGAAATCTAAGAAAAACCTGTGAACAC---TAACTACTTATAGATATATTGATTTATTTTTTGTTTTTATGCTCCATTTAAACCAGTAGATTTGAATGAATATTAATGTTAATTTTTATTG------------------------------------------------AAAGAACTAATGCTTAATAAAAGTAACTCTCCACTAAAACTTTTGGATATCCACAATTTTTTAAA-TGAGACTTCACGTTAATGCTACACTATTAAACTTTTTCCA--AAGGAGTCACAT----ACTCAACAGATTTTTTGTTAGACA--Tttctgaatttcagacaacagaattcacttcaattggtttaag--aacaaaag------gatttactgcaggt--agcaggtcgctta-cagaatctttgggaaggTTTGTAAAATGGTTTCTAGTTCAAACTTCCAGCAACAACTCTGGTGAAGATGCTGGGCTGACCTCAGAATCACAATGTCTTCACCACAGTTAGGAAG--G-----GGGT----GGC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4227239 470 - 5137665 TAAATTTTATACTGAAATCTAAGAAAAACCTGTGAACAC---TAACTACTTATAGATATATTGATTTA-CTTTTGTTTTTATGCTCCATTTAAACCAGTAGATTTGAATGAATATTAATGTTAATTTTTATTG------------------------------------------------AAAGAACTAATGCTTAATAAAAGTAACTCTCCACTAAAATTTTTGGATATCCACAATTTTTTAAA-TGAGACTTCATGTTAATGCTACACTATTAAACTTTTTCCA--AAGGAGTCACAT----ACTCAACAGATTTTTTGTTAGACA--TTTCTGAATTTCAGAGAACAGAATTCACTTCAATTGGTTTAAG--AACAAAAG------GATTTACTGCAGGT--AGCAGGTCGCTTA-CAGAATCTTTGGGAAGGTTTGTAAAATGGTTTCTAGTTCAAACTTCCAGCAACAACTCTGGTGAAGATGCTGGGCTGACCTCAGGATCACAATGTCTTCACCACAGTTAGGAAG--G-----GGGT----GGC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122936629 470 - 135778131 TAAATTTTATACTGAAATCTAAGAAAAACCTATGAACAC---TAACTACTTATAGATATATTGATTTATTTTTTGTTTTTATGCTCCATTTAAACCAGTAGATTTGAATGAATATTAATGTTAATTTTTATTG------------------------------------------------AAAGAACTAACGCTTAATAAAAGTAACTCTCCACTAAAACTTTTGGATATCCACAATTTTTTAAA-TGAGACTTCATGTTAACGCTACACTATTAAACTTTTTCCA--ACGGAGTCCCAT----ACTCAACAGATTCCTTGTTAGACA--TTTCTGATTTTCAGACAACAGAATTCACTTCAATTGGTTTAAG--AACAAAAA------GATTTACTGCAGGT--AGCAGGTCGCTTA-CAGAATCTTTGGGAAGGTTTGTAAAATGGTTTCTAGTTCAAACTTCCAGCAACAACTCTGGTGAAGATGCTGGGCTGACCTCAGAATCACAATGT-TTCACCACAGTTAGGAAG--G-----GGGC----GGC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2049165 471 + 2427316 TAAATTTTATACTGAAAGCTAAGAAAAACCTGTGAACAC---TAACTACTTATAGATATATTGATTTATTTTTTGTTTTTATGCTCCATTTAAACCAGTAGATTTGAATGAATATTAATGTTAATTTTTATTG------------------------------------------------AAAGAACTAATGCTTAATAAAAGTAACTCTCCACTAAAATTTTTGGATATCCACAATTTTTTAAA-TGAGACTTCATGTTAATGCTACACTATTAAACTTTTTCCA--AAGGAGTCACAT----ACTCAACAGATTTTTTGTTAGACA--TTTCTGaatttcagacaacagaattcacttcaattggtttaag--aacaaaag------gatttactgcaggt--agcaggtcgctta-cagaatctttgggaaggtttgtaaaatggtttctagttcaaacttccagcaacaactcTGGTGAAGATGCTGGGCTGACCTCAGGATCACAATGTCTTCACCACAGTTAGGAAG--G-----GGGT----GGC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1344586 468 + 1448899 TAAATTTTATACTGAAATATAAGAAAAACCTATGAAC-------ACTACTTATAGATATATTGATTTATTTTTTGTTATTATTCTCCATTTAAACCAGTAGATTTGAATGAATATTAATGTTAATTTTTATTG------------------------------------------------AAAGAACTAATGCTTAATAAAAGTAACTCTCCACTAAAACTTTTGGATATCCACAATTTTTTAAA-TGAGACTTCATGTTAATGCTACACTATTAAACTTTTTCCA--AAGGAGTCACAT----ACTCAACAGATTTTTTGTTAGACA--TTTCTGAATTTCAGACAACAGAATTCACTTAAATTGGTTTAAG--AACAAAAG------GATTTACTGCAGGT--AGCAGGTCACTTACCAGAATCTTTGGGAAGGTTTGTAAAATGGTTTCTAGTTCAAACTTCCAGCAACAACTCTGGTGAAGACGCTGGGCTGACCTCAGAATCACAATGTCTTTACCACAGTTAGGAAG--G-----GGGC----GGC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53051015 472 - 190850796 TAAATTTTATACTGAAATCTAAGAAAAGCCTATGAAT-------GCTACTTATAGATATATCAATTTATTTTTGTTTTTTATTCTCCATTTAAAACAGCAAATTTGAATAAATATTAACGTTCATTTTTATTG------------------------------------------------AAAGAACTGGTGCTTACCGAAAGTAACTCTTCACTAAAACTTTTGGATATCCACAATTTTTAAAA-TGAGACTTCATGTTAATGCTACACTATTAAACTTTTTCCA--AAAGAATCACAT----ACACAACAGGTCTTCTGTTAGACA--GTTCTGaatttcagacaacagaatccactctgattggtttaagacaaaacaaaag----gatttattgcaggt--agcaggtggctta-cagaatctttggaaaggtttgtaaaatggtttctagtccaaacttcgagcaacaactcTGGTGAAGACGTTGGGCAGACCTCAGAACCACAATATATCCACCATAGTTAGGAAG--G----TGGGA----CGG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8216787 476 - 15139346 TAAATTTTATACTGAAGTCTAAGAAAAGCCTATGAAT-------GCTACTTATAGCTATATCaatttatttttattttttattatCCATTTAAAACAGCAAATTTGAATGAATATGAATGTTCATTTTTACTG------------------------------------------------AAAGAACTGGTGCTTACTGAAAGTAACTCTTCACTAAAACGTTTGCATATCCACAATTTTTAAAA-TGAGACTTCATGTTAATGCTATACTATTAAACTTTTTCCA--AAAGAATCACAT----ACACAACAGGTCTtctgttaggca--gttctgaatttcagacaacagaatccactctgattggtttaagacaaaaaaaaaaaaatgatacactgcaggt--agcagatggctta-cagaatctttggaaaggtttgtaaaatggtttctagtccaaacttaaagcaacaactctggtgaagacgttggacagacctcagaaccaccgtatattcaccatagttaggaag--g----tgggg----gcg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7003608 469 - 7304997 TAAATTTTATACTGAAGTCTAAGAAAAGCCTATGAAT-------GCTACTTATAGATATATCAATTTAT-----TTTTTTATTCTCCATTTAAAATAGCAAATTTGAATGAATATTAATGTTCATTTTTATTG------------------------------------------------AAAGAACTGGTGCTTACTGAAAGTAACTCTTCACTAAAACTTTTGGATATCCACAATTTTTAAAA-TGAGACTTCATGTTAACGCTACACTATTAAACTTTTTCCA--AAAGAATCACAT----ACACAACAGGTCTTCTGTTAGACA--GTTCTGaatttcagaaaacagaatccactgtgattggtttgagacaaaaaaat------gatttactgcaggt--agcaggtggccta-cagaatctttggaaaggtttgtaaaatggtttctagtccaaacttcgagcaacaactcTGGTGAAGAAGCTGGGCAGACCGCAGAACCACAATATATTCACCATAGTTAGGAAG--GTGGATGGGG----GGT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9421415 465 - 11631747 TAAATTTTATACTGAAATCTAAGAAAAGCCTATGAAT-------GCTACTTATAGATATATCTATCTATTTTTGTTTTTTATTCTCCATTTAAAACAGCAAATTTGAATGAATATTAATGTTCATTTTTATTG------------------------------------------------AAAGAACTGGTGCTTACTGAAAGTAACTCTTCACTAAAACTTTTGGATATCCACAATTTTTTAAA-TGAGACTTCATGTTAATGCTACACTATTAAACTTTTTTCA--AAAGAATCACAT----ACACAACAGGTCTTCTGTTAGACA--gttctgaatttcagacaacagaatccactctgattggtttaagacaaaaaaag------gatttactgcaggt--agcaggtggctta-cagaatctttggaaaggtttgtaaaatggtttctagtccaaacatcgagcaacaactctggtgaagacgttgggcagacctcagaaccacaatatatccaccatagttaggaag--g----tgg--------- i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1807572 449 + 3286835 TAAATTTTATATTGAACTCTAAAAAGAGCCTATGAACAT---T-ATTAGTTACAGATACATTGATTAACTTTTGGGTTTTATTCTCCATTTAAAACAGTAAA-CTGAATAACTATTAGTGTTAATTTTTATTG------------------------------------------------AATGAACTGGTGCTTAATGAAAGTTACTCTCCACTAAAATTTCTAACTATGCACGATTTTTAAAA-TGAGACTTCATATTAATGCTACGCTATTAAACTTTTTCCAAGAAAGAATCACA--------CAACAAATTTTACACAAcaga--tttctgggtcgcaaacaacagaatccactctgattggtttaag--aaagaaag------gatttactataggt--attaggtagttta-taggat--------------AAAAAATATTTTATAGTCCAAACTAC-AGC-AAAATTCTGGGGAAGAGGCTGGCCAGATCGCAGAACCAC-AGGTCTCCACCACAGTTAGGAAGCAG-----GGGC------- i micMur3.chrUn_NW_017968520v1 C 0 I 8 s proCoq1.NW_012140747v1 1897622 447 + 4188776 TAAATTTTATATTGAACTCTAAGAAGAGCCTATGAACAT---T-ATTATTAACAGATACATTGATTAATTTTTGGTTTTTATTCTCCATTTAAAACAGTCAA-TTGAATAACTATTAGTGTTAATTTTGATTG------------------------------------------------AATGAACTGGTGCTTAATGAAAGTAACTCTCCACTAAAATTTCTAACTATGCACGATTTTTAAAA-TGAGACTTCATATTAATGCTACACTATTAAACTTTTTCCAAGAAAGAATCACA--------CAACAGATCTTACAT----TA--gttctgggtcacagacaacagaatccagtctgattggtttaag--aaagaaag------gatttactacaggt--attaggtagttta-cagaat--------------AAAAAATAGTTTCGAGTCCAAACTTC-AGCAAAAACTCTGGGGAAGATGCTGGCCAGACCCTGGAACCACAAGGTCTCCACCACAGTTAGGAAGCAG-----GGGC------- i proCoq1.NW_012140747v1 C 0 I 8 s mm10.chr5 76449899 417 + 151834684 TAAG-GTTATAATGTACTCTAAG---AGCCTATGAACACCATTAAATATTTATGAGCATATTGATTTATTTTCAGCTTTTCATCTCAACTTAAAAGGGTAAATTTGAGTGAACACTGATGTCAGTCTTCATTG------------------------------------------------AATGAAATGTTGCTTAAGGAAAACAATTCCCCACTGAAATTTATAAATATCCATCATTTTTTAAAGTGAG-------------GCAATATTATTAAACCTTTTCTAAGAATGAAGCACAC----ACAAAAGGAATC-----TGAGACA--ATTCCTGCTTGTACAGGACAGAATTCACTCTGGCTAGTTTAAG--AAAATAAG------GTTTTAGTATAGGT--AGCAGGTAGATGT-CAGAGCATTTGAAAAGGCTTG-AGGACTTTTTCTGCTTCAAACTTCCAGCAACAACTCTG-----------------------GAAACACAGGGTC-------CATCTAGGAAG--C---------------- i mm10.chr5 I 2 C 0 s canFam3.chr13 48032354 506 + 63241923 TATATTGTATATTGCACTATAAGAAGAATCTATGTGCATCATAAACTAGTCTTAGATACATGGATT----TTTTTGTTTTATTCTCCATTTAAAAGGGTAAATTTGAATAAATATCAATATCAATATTCATTGAACTGGTGAAAGATTTTATTTATTTATACATTTACTTGAGAGACAGAAAAAGAACTGGTACTTAATAAAAGTGACTTTCCA-------TTCTAAATATTCATGATTTATAAAA-TGAGACTTTCCGTTAATGCGACATTATTTAACTTTTTCCAAGAAAGACTCACAT----ACACAGTGGATCTtatattaaatagggtcctggattgcagacaacagaatccactctgactggtttaag--aaagaaag------gatttactacagct--atcagttagttta-cagaatctttggaaaggttagtgaaatagtttctgg-ccaaccttccaggaacaact-TGGTGAAGATGCTAAACAGACCCCAGAAACATACTGTTGCCATCACAGTCAGGAAA--T---------------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4128954 462 - 5279953 TACATTATATATTGAACTTTAAGAAGGACTTATGAACATTATTACTTACTTAAAGATACTTTGGTTCATTCTTGTTTTTTATTCTCCATTTGAAA-GGCAAATGTGAATAAATATTAATTTCAATCTTTACCA------------------------------------------------AATGAACTGATGCTTAATGAAAGTAACTCTCCATTAAAATATATAAATATCCAAACTTTTATAAA-TGGAACCTCTTGTTAATGCTACATTATTTAACTTTTTCAAATAAAGAATAACATTATACCCTAGTGGATCTTATTttagacagggttctaggtcacagacaacagaatccactctgattcatctaag------aatg------gatgtgctacaagt--atcaggtagctta-tagaatctttgcagaggTTAATGAAATAGGAT-------AAACTACCAGAAACAACTCTGGC-AAGATGCTGAGTAGACCCCAGAACCACACTGTTCCCACCACAGTCAGCAAG--C---------------- i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8646867 278 + 8790067 I a score=190062.000000 s hg38.chr4_KI270787v1_alt 97629 18 + 111943 GGGG---GGCACAACATCTGA s panTro5.chr4 119664883 18 - 194502333 GGGG---GGCACCACATCTGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121078702 18 - 195804263 GGGG---GGCACCACATCTGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4507707 18 - 17550833 GGGG---GGCACCACATCTGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69379632 18 - 118206036 GGGG---GGCACCACATCTGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111590624 21 - 190429646 GGGGGTAGGCACCATATCTGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110759804 21 - 189454096 GGGGGTAGGCACCATATCTGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13326221 21 + 26754465 GGGGGTAGGCACCATATCTGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4227709 21 - 5137665 GGGGGTAGGCACCATATCTGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122937099 21 - 135778131 GGGGGTAGGCACCATATCTGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2049636 21 + 2427316 GGGGGTAGGCACCATATCTGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1345054 21 + 1448899 GGGGTTAGACACCATATCTGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53051487 18 - 190850796 GGGG---GGCACCACATCTGA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8217263 18 - 15139346 gggg---ggcaccacATCTGA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7004077 18 - 7304997 GGGG---GGTACCACATCTGA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9421880 18 - 11631747 ggGG---GGCACCACATCTGA i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76450316 18 + 151834684 AGGA---GCCCACACGGCTGA i mm10.chr5 C 0 C 0 s canFam3.chr13 48032860 18 + 63241923 TGGA---GCCACCACATCTGA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4129416 18 - 5279953 TGTG---GAAATTCCATCTGA i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1898069 8 + 4188776 I e micMur3.chrUn_NW_017968520v1 1808021 8 + 3286835 I e otoGar3.GL873602 8646867 278 + 8790067 I a score=1771515.000000 s hg38.chr4_KI270787v1_alt 97647 137 + 111943 CCAAAGGATCGCATGATTTTTGCCAATATCTGCACCAG-GAAAATTGATGCCCCATGTCCTTCCTTTTTCCCCACATATACTGATTTCAAATGAAAATATCATGAAGAGCTATCTAATTGTCAG---AATCTAAATCAT-----TA s panTro5.chr4 119664901 137 - 194502333 CCAAAGAATCGCATGATTTTTGCCAATATCTGCACCAG-AAAAATTGATGCCCCATGTCCTTCCTTTTTCCCCACATATATTGATTTCAAATGAAAATATCATGAAGAGCTATCTAGTTGTCAG---AATCTAAATCAT-----TA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121078720 137 - 195804263 CCAAAGAATCGCATGATTTTTGCCAATATCTGCACCAG-AAAAATTGATGCCCCATGTCCTTCCTTTTTCCCCACATATATTGATTTCAAATGAAAATATCATGAAGAGCTATCTAGTTGTCAG---AATCTAAATCAT-----TA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4507725 137 - 17550833 CCAAAGAATCGCATGATTTTTGCCAATATCTGCACCAG-AAAAATTGATGCCCCATGTCCTTCCTTTTTCCCCACATATATTGATTTCAAGTGAAAATATCATGAAGAGCTATCTAATTGTCAG---AATCGAAATCAT-----TA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69379650 137 - 118206036 CCAAAGAATCGCGTGATTTTTGCCAATACCTGCACCAG-AAAAATTGATGCCCCGTGTCCTTCCTTTTTCCCCACATATATTGACTTCAAATGAAAATATCATGAAGAGCTATCTAATTGTCAG---AATCTAAATCAT-----TA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111590645 138 - 190429646 CCAAAGAATGGCGTGATTTTTGCCAATACCTGCACCAGAAAAAACTGATGTCCCATGTCCTTCCTGTTTCCCCACATATATTGATTTCAAATCAAAACATCATGAAGAGCTATCTAATTGTCAG---AATCTAAATCAT-----TA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110759825 138 - 189454096 CCAAAGAATGGCGTGATTTTTGCCAATACCTGCACCAGAAAAAACTGATGTCCCATGTCCTTCCTGTTTCCCCACATATATTGATTTCAAATCAAAACATCATGAAGAGCTATCTAATTGTCAG---AATCTAAATCAT-----TA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13326242 138 + 26754465 CCAAAGAATGGCGTGATTTTTGCCAATACCTGCACCAGAAAAAACTGATGTCCCATGTCCTTCCTGTTTCCCCACATATATTGATTTCAAATCAAAACATCATGAAGAGCTATCTAATTGTCAG---AATCTAAATCAT-----TA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4227730 138 - 5137665 CCAAAGAATGGCGTGATTTTTGCCAATACCTGCACCAGAAAAAACTGATGTCCCATGTCCTTCCTTTTTCCCCACATATATTGATTTCAAATCAAAACATCATGAAGAGCTATCTAATTGTCAG---AATCTAAATCAT-----TA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122937120 138 - 135778131 CCAAAGAATGGCGTGATTTTTGCCAATACCTGCACCAGAAAAAACTGATGTCCCATGTCCTTCCTTTTTCCCCAAGTATATTGATTTCAAATCAAAATATCATGAAGAGCTACCTAATTGTCAG---AATCTGAATCAT-----TA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2049657 138 + 2427316 CCAAAGAATGGTGTGAGTTTTGCCAATACCTGCACCAGAAAAAACTGATGTCCCATGTCCTTCCTTTTTCCCCACATATATTGATTTCAAATCAAAACATCATGAAGAGCTATCTAATTGTCAG---AATCTAAATCAT-----TA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1345075 134 + 1448899 CCAAAGAATGGCGTGATTTTTGCCAATACCCGCACCAGAAAAAACTGATATCCCATGTCCTTCCTTTTTCCCCACATATATTGATTTCAAATCAAAATATCATGAAGAG----CTAATTGTCAG---AATCTAAATCAT-----TA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53051505 131 - 190850796 CCAAAGAATCACATGATTTTTGCCAATATCTGCACCAG-AAAAATTGATGCCCCATGTCCTTCC-TTTTCCCCACATGTACTGATCTCAAATC-AAATATCATGAAGAG----CTAATTGTCAG---AATCTAAATCAT-----TA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8217281 133 - 15139346 CCAAAGAATCACACGATTTTTTCCAATATCTGCACCAG-AAAAATTGATGCCCTATGTCCTTCCTTTTTCCCCACACCGATTAATCTCAAATCAAAATATCATGAAGAG----CTAATTGTCAG---AATCTAAATCAT-----TA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7004095 133 - 7304997 CCAAAGAATCACATGATTTTTGCCAATATCTGCACCAG-AAAAATTGATGCCCTATGTCCTTCCTTTTTCCCCACACATATTGATCTCAAATCAAAATATCATGAAGAG----CTAATTGTCAG---AATCTAAATCAT-----TA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9421898 132 - 11631747 CCAAAGAATCACATGATTTTTGCCAATATCTGCACCAG-AAAAATTGATGCCCCATGTCCTTCC-TTTTCTCCACACATATTGATCTCAAATCAAAATATCATGAAGAG----CTAATTGTCAG---AATCTAAATCAT-----TA i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1808029 132 + 3286835 CCAAAGAATAGCATGATCTTTGCCAATACCTGCACCAG-AACAATTGATG-CCCATGTCCTATCTTTTCCCCCACATATATTAATGTCAAATCAAGATATCATGAAGAT----ATATGTGTCAG---AATCTAAATCAT-----TA i micMur3.chrUn_NW_017968520v1 I 8 I 10 s proCoq1.NW_012140747v1 1898077 132 + 4188776 CCAAAGAATAGCGTGATCTTTGCCAATACCTGCACCAG-AAAAATTGATG-CCCATGTCCTACCTTTTCTCCCACATATATTAATTTCAAATCAAAATATCACGAAGAT----ATATCTGTCAG---AATCTAAATCAT-----AA i proCoq1.NW_012140747v1 I 8 I 4 s mm10.chr5 76450334 73 + 151834684 GCAAAAGGTCAAGTGGCCATTGCCTAGGTCTGTATGAG-GAACACGGATG-TCCACACCCCTC---------------------------------------------------------TCAC---AGTCTAAA----------- i mm10.chr5 C 0 C 0 s canFam3.chr13 48032878 121 + 63241923 ACAAAGAATCATGTGGTTTTTGCCAATTCCTGCAGCAC-CAAAATGGATGCCCCATGTCCTACCTTTTCCCCCATATATATTAATTTCATGAAAATACATC-----------------TGTCAG---AATCTAAATCATG----TA i canFam3.chr13 C 0 I 4 s dasNov3.JH568349 4129434 145 - 5279953 GTAAAGAATCATGAGGTCTTTGCCAGTATTTGTGCCAG-CACTATGGATGTCCCATGTCTTACCTTTTTCCACACATAAATTTATTCCAAATCAAAATGTCATGTAGATACATTTAATTGTCAGGACAATATAAATCATGTGTCTA i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8646867 278 + 8790067 I a score=35150.000000 s hg38.chr4_KI270787v1_alt 97784 7 + 111943 TACATTA s panTro5.chr4 119665038 7 - 194502333 TACATTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121078857 7 - 195804263 TACATTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4507862 7 - 17550833 CACATTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69379787 7 - 118206036 TATATTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111590783 7 - 190429646 TACTTTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110759963 7 - 189454096 TACTTTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13326380 7 + 26754465 TACTTTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4227868 7 - 5137665 TACTTTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122937258 7 - 135778131 TACTTTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2049795 7 + 2427316 TACTTTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1345209 7 + 1448899 TACATTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53051636 7 - 190850796 TATATTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8217414 7 - 15139346 TACATTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7004228 7 - 7304997 TACATTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9422030 7 - 11631747 TACATTA i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1898213 6 + 4188776 TACCCT- i proCoq1.NW_012140747v1 I 4 C 0 s mm10.chr5 76450407 1 + 151834684 -A----- i mm10.chr5 C 0 C 0 s canFam3.chr13 48033003 6 + 63241923 GACCCT- i canFam3.chr13 I 4 C 0 s dasNov3.JH568349 4129579 6 - 5279953 TAACCT- i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1808161 10 + 3286835 I e otoGar3.GL873602 8646867 278 + 8790067 I a score=3203599.000000 s hg38.chr4_KI270787v1_alt 97791 255 + 111943 AAAAGAAAAGGTA----GG-------CTCAGAAAGGTAGCTT-TTAGTTTGTTTTCTA---CTTTGTTTTG--TTTGTATTCTACATTGAGATGATGGTGTTTACACTGTGAAAAACTATAAAATTATTAGAATCT--------------GTTAAAAATATTTGAGACAACCTGAAATTACAAATGTTAACTGTATTTTATTTATCATAAAATGTAAGGT-CTTCACCTAACACGTTTTGCATGTTTTTTCACATTCTAG--ATAAA-----TAAGTGGA--------------------------------------------TTGTTATAGCAGTC s panTro5.chr4 119665045 255 - 194502333 AAAAGAAAAGGTA----GG-------CTCAGAAAGGTAGCTT-TTAGTTTGTTTTCTC---CTTTGTTTTG--TTTGTATTCTACATTGAGATGATGGTGTTTACACTGTCAAAAACTATAAAATTATTAGAATCT--------------GTTAAAAATATTTGAGACAACCTGAAATTACAAATGTTAACTGTATTTTATTTATCATAAAATGTAAGGT-CTTCACCTAACACGTTTTGCATGTTTTTTCACATTCTAG--ATAAA-----TAAGTGGA--------------------------------------------TTGTTACAGCAGTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121078864 255 - 195804263 AAAAGAAAAGGTA----GG-------CTCAGAAAGGTAGCTT-TTAGTTTGTTTTCTC---CTTTGTTTTG--TTTGTATTCTACATTGAGATGATGGTGTTTACACTGTCAAAAACTATAAAATTATTAGAATCT--------------GTTAAAAATATTTGAGACAACCTGAAATTACAAATGTTAACTGTATTTTATTTATCATAAAATGTAAGGT-CTTCACCTAACACGTTTTGCATGTTTTTTCACATTCTAG--ATAAA-----TAAGTGGA--------------------------------------------TTGTTACAGCAGTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4507869 254 - 17550833 AAAAGAAAAGGTA----GG-------CTCAGAAAGGTAGCTT-TCAGTTTG-TTTCTC---CTTTGTTTTG--TTTGTATTCTACATTGAGATGATGGTGTTTACACTGTGAAAAACTATAAAATTATTAGAATCT--------------GTTAAAAATATTTGAGACAACCTGAAATTACAAATGTTAACTGTATTTTATTTATCATAAAATGTAAGGT-CTTCACCTAACACGTTTTGCATGTTTTTTCACATTCTAG--ATAAA-----TAAGTGGA--------------------------------------------TTGTTATAGCAGTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69379794 294 - 118206036 AAAAGAAAAGGTA----GG-------CTCAGAAAGGTAGCTT-ttagtttgttt--------tttgttttg--tttgtATTCTACATTGAGATGATGGTGTTTACACTGTGAAAAACTATAAAATTATTAGAATCT--------------GTTAAAAATATTTGAGACAACCTGAAATTACAAATGTTAACTGTATTTTATTTATCATAAAATGTAAGGT-CTTCACCTAACACATTTTGCATGTTTTTTCACATTCTAG--ATAAA-----TAAGTGGATTGTTATAGCAGTCTAATAACTTTTTTATAGATAAATAAGTGGATTGTTATAGCAGTC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111590790 255 - 190429646 AAAAGAAAAGGTA----GG-------CTCAGAAAGGTAGCTT-TTAGTTTGTTTTCTC---TTTTGTTTTG--TTTGTATTCTACACTGAGATGATGGTGTTTACACTATGAAAAACTATAAAATCATTAGAATCT--------------GTTTAAAATATTTGAGACGACCCAAAATTACACATGTTAACTGTATTTTATTTATCATAAAATACAAGGT-CTTCACCTAACCCATTTTGCATATTTTTTCACATTCTAG--ATAAA-----TAAGTGGA--------------------------------------------TTATTATAGCAGTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110759970 255 - 189454096 AAAAGAAAAGGTA----GG-------CTCAGAAAGGTAGCTT-TTAGTTTGTTTTCTC---TTTTGTTTTG--TTTGTATTCTACACTGAGATGATGGTGTTTACACTATGAAAAACTATAAAATCATTAGAATCT--------------GTTTAAAATATTTGAGACGACCCAAAATTACACATGTTAACTGTATTTTATTTATCATAAAATACAAGGT-CTTCACCTAACCCATTTTGCATATTTTTTCACATTCTAG--ATAAA-----TAAGTGGA--------------------------------------------TTATTATAGCAGTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13326387 255 + 26754465 AAAAGAAAAGGTA----GG-------CTCAGAAAGGTAGCTT-TTAGTTTGTTTTCTC---TTTTGTTTTG--TTTGTATTCTACACTGAGATGATGGTGTTTACACTATGAAAAACTATAAAATCATTAGAATCT--------------GTTTAAAATATTTGAGACGACCCAAAATTACACATGTTAACTGTATTTTATTTATCATAAAATACAAGGT-CTTCACCTAACCCGTTTTGCATATTTTTTCACATTCTAG--ATAAA-----TAAGTGGA--------------------------------------------TTATTATAGCAGTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4227875 255 - 5137665 AAAAGAAAAGGTA----GG-------CTCAGAAAGGTAGCTT-TTAGTTTGTTTTCTC---TTTTGTTTTG--TTTGTATTCTACACTGAGATGATGGTGTTTACACTATGAAAAACTATAAAATCATGAGAATCT--------------GTTTAAAATATTTGAGACGACCCAAAATTACACATGTTAACTGTATTTTATTTATCATAAAATACAAGGT-CTTCACCTAACCCATTTTGCATATTTTTTCACATTCTAG--ATAAA-----TAAGTGGA--------------------------------------------TTATTATAGCAGTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122937265 253 - 135778131 CAAAGAAAAGGTA----GG-------CTCAGAAAGGTAGTTT-TTAGTTTGTTTTCTC---TTTTGTTTTG--TTTGTATTCTACACTGAGATGATGGTGTTTACACTGTGAAAAACCATAAAATCATTAGAATCT--------------GTTTAAAATATTTGAGACGACCCAAAATTACAC--GTTAACTGTATTTTATTTATCATAAAATACAAGGT-CTTCACCTAACCCATTTTGCATATTTTTTCACATTCTAG--ATAGA-----TAAGTGGA--------------------------------------------TTATTATAGCAGTC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2049802 255 + 2427316 AAAAGAAAAGGTA----GG-------CTCAGAAAGGTAGCTT-TTAGTTTGTTTTCTC---TTTTGTTTTG--TTTGTATTCTACACTGAGATGATGGTGTTTACACTATGAAAAACTATAAAATCATTAGAATCT--------------GTTTAAAATATTTGAGACGACCCAAAATTACACATGTTAACTGTATTTTATTTATCATAAAATACAAGGT-CTTCACCTAACCCATTTTGCATATTTTTTCACATTCTAG--ATAAA-----TAAGTGGA--------------------------------------------TTATTATAGCAGTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1345216 255 + 1448899 AAAAGAAAAGGTA----GG-------CTCAGAAAGGTAGCTT-TTAGTTTGTTTTCTC---TTTTGTTTTG--TTTGTATTCTACACTGAGATGATGGTGTTTACACTGTGAAAAACTATAAAATCATTAGAATGT--------------GTTTAAAATATTTGAGACAACCCAAAAACACACATGTTAACTGTATTTTATTTATCATAAAATACAAAGT-CTTCACCTAACCCATTTTGCATATTTTTTCACATTCTAG--ATAAA-----TAAGTGGA--------------------------------------------TTGTTAAAGCagtc i colAng1.NW_012119221v1 C 0 I 28 s calJac3.chr3 53051643 254 - 190850796 AAAAGAAATGGTA----GG-------CTCAGAAAGATAGCTT-TTTGTTTGTTTTCTC---TTTCGTTTTG--TTTGGATTCTACATTGAGATGATGGTGTTTACACTGTGAAAAACTATAAAATTATTAAAATGT--------------GTTAGAGATATTTGAGACAACCCAAAATTA-AAGTGTTAACTGCATTTTATTTATCATAAAATGTAAAGT-TTTCACCTAATACATTTTGCGTGTTTTTTCACATTCTAG--ATAAA-----TAAGTGGA--------------------------------------------TGATTATAGCAGTC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8217421 248 - 15139346 AAAAGAAAAGGTC----GC-------CTCAGAAAGGTAGCTT-----TTTGTTTTCTC---TTTTGTTTTG--TTTGTATTCTACATTGAGATGATGGTGTTTACACTATGAAAAACTATAAAATTATTAAAATGT--------------GTTAAAAATA-TTGAGACAACCCAAAATTA-AAGTGTTAACTGCATTTTATTTATCATAAAATGTAAAGT-TTTCACCTAATACATTTTGTGTGTTTTTTCACA-TCTAG--ATAAA-----TAAGTGGA--------------------------------------------TGGTTATAGTAGTC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7004235 254 - 7304997 AAAAGAAAAGGTA----GG-------CTCAGAAAGGTAGCTT-TTTGTTTGTTTTCTC--------TTTTG--TTTGGATTCTACATTGAGATGATGGTGTTTACACTATGAAAAACTATAAAATTATTAAAATGT--------------GTTAAAAATATTTGAGACAACCCAAAATTA-AAGTGTTAACTGCATTTTATTTATCATAAAATGTAAACT-TTTCACCTGATACATTTTGTGTGTTTTTTCACATTCTAG--ATAAATACTGTAAGTGGA--------------------------------------------TTGTTATAGCAGTC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9422037 254 - 11631747 AAAAGAAAAGGTA----GG-------CTCAGAAAGATAGCtt-tttgtttgttttctt---ttttgttttg--tttGGATTCTACATTGAGATGAAGGTGTTTACACTATGAAAAACTAAAAAATCATTAAAATGT--------------GTTAAAAATATTTGAGACAACCCAAAATTA-AAGTGTTAACTGTATTTTATTTATCATAAAATGTAAAGT-TTTCACCTAATACATTCTGTGTGTTTTTTCGCATTCTAG--GTAAA-----TAAGTGAA--------------------------------------------TTGTTATAGCGGTC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1808171 260 + 3286835 AAAAGAAAAGGTA----AG-------CTGGGAAAGGTAGCTTCttggtttgttttttcaagttttgttttg--tttgtattgtACATTGAGATGGTGGGGTTTACACTATGAAGAACTATAAAAATGTTATAGTAT--------------GTTCAAAGGATCTGGGACAACCCCAAGTTACAAATGTCAACTGCATTTTATTTATCATAAAATTTCAGGTACTTTACGTAATACATTTCGCATGTTTTTCTTCATTCTAG--ATAAA-----TAAGTGGA--------------------------------------------TGGTTCTAGCAGTC i micMur3.chrUn_NW_017968520v1 I 10 I 50 s proCoq1.NW_012140747v1 1898219 260 + 4188776 AAAAGAAAAGGTA----GG-------CTGGGAAAGGTAGCTTAttcgtttggtttttcttgttttgttttg--tttgtattgtACATTGAGATGGTGGGGTTTACACTATGAAGAAGTATAAAAATGTTATAGCAT--------------GTTCAAAGGATCTGAGACAACACCAAATTACATATGTCAACTGCATTTTGCTTATCATAAAATTTCAGGTACTTTACCTAATACATTTTGCATGTTTTTCTTCATTCTAG--ATAAA-----TAAGTGGA--------------------------------------------TGGTTATAGCAGTC i proCoq1.NW_012140747v1 C 0 C 0 s mm10.chr5 76450408 207 + 151834684 GAAAGAACAGCT-----------------GGAAATGTCACCC-------------------------TTCG--GTTCTAATCTACATTGAGGTGGTAG-GCTTATGCTATGAAGAAC---AAAAATGTCAGTGGGT--------------GCTCA---------GGCCAAGCTATAAATAGCAATACAGCCTCTA--------ACCATGAAGTTTGAGGTACTTTGCCTAAGATATTTTGCATGTTTTC---CTTGCTGGTTACAAA-----TGTATAGC--------------------------------------------TTGTGCCAGCAACT i mm10.chr5 C 0 C 0 s canFam3.chr13 48033009 269 + 63241923 ACAAGAAAGGTGA----GGAAAGGGACTGGAAAGGGTAGGTT-----TTTGTTTTATT--GTTTTGGTTTGGTTTTATATTCCTCATTATGATGGTTGGGTTTACATTACTGGGGACAACAAAAATGTAACCATTTCAAAATGCAGTCAAGTTCAAAAGACT--GGACAGCCTCAAATTG--TGTGTCAACTTCAGATT-TTTATCACAAAATTTAGAGTACTTTACTTAACACATTTTGCATGTTTTCT--CATTCTAG--ATAAA-----TAAGAGGA--------------------------------------------CTGTTATAGTTGTC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4129585 239 - 5279953 AAAAGAAAATGTAAGGTGG-------CTAGGAAAGGTAGTTT-TAAA--------------AAGAATTATA-------ATTCTATGCTGAGATTATGGGATTTACACTCTGGGGAATTATAAACG---TAGAGTTT--------------GTTCAAAAGATTTTGCACTACCTCAAATTGCAAATGTCAACTGCAGACC-TTTATCATAAAATTTAGGGTACTTTACTTAATACATTTGGCATGTTTTGCTTCACTTTAG--ACAAA-----TAAGGGGA--------------------------------------------CTATATTAGTAGC- i dasNov3.JH568349 C 0 C 0 e otoGar3.GL873602 8646867 278 + 8790067 I a score=141212.000000 s hg38.chr4_KI270787v1_alt 98046 12 + 111943 TAATAA--CTTTTT s panTro5.chr4 119665300 12 - 194502333 TAATAA--CTTTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121079119 12 - 195804263 TAATAA--CTTTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4508123 12 - 17550833 TAATAA--CTTTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69380088 12 - 118206036 TAATAA--CTTTTT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111591045 12 - 190429646 TAATAA--CTTTTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110760225 12 - 189454096 TAATAA--CTTTTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13326642 12 + 26754465 TAATAA--CTTTTT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4228130 12 - 5137665 TAATAA--CTTTTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122937518 12 - 135778131 TAATAA--CTTTTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2050057 12 + 2427316 TAATAA--CTTTTT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1345499 12 + 1448899 TAATAA--CTTTTT i colAng1.NW_012119221v1 I 28 C 0 s calJac3.chr3 53051897 9 - 190850796 TAATCA--C---CT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8217669 12 - 15139346 TAATCA--CTTTTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7004489 12 - 7304997 TAATCA--CTTTTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9422291 12 - 11631747 TAATCA--CTTTTT i aotNan1.NW_018493494v1 C 0 C 0 s proCoq1.NW_012140747v1 1898479 12 + 4188776 CAGTCA--CTTTTT i proCoq1.NW_012140747v1 C 0 I 38 s mm10.chr5 76450615 14 + 151834684 TACCCAACCTTTTT i mm10.chr5 C 0 C 0 s canFam3.chr13 48033278 12 + 63241923 CAGTCA--TTTTTT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4129824 12 - 5279953 CAGTCA--TTTTTT i dasNov3.JH568349 C 0 C 0 e micMur3.chrUn_NW_017968520v1 1808431 50 + 3286835 I e otoGar3.GL873602 8646867 278 + 8790067 I a score=193996.000000 s hg38.chr4_KI270787v1_alt 98058 23 + 111943 ------TATTGTT----TTGGT-ACT--------------------TTGCTTAT s panTro5.chr4 119665312 23 - 194502333 ------TATTGTT----TTGGT-ACT--------------------TTGCTTAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121079131 24 - 195804263 ------TATTGTT----TTGGTCACT--------------------TTGCTTAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4508135 23 - 17550833 ------TATTGTT----TTGGT-ACT--------------------TTGCTTAT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69380100 23 - 118206036 ------TATTGCT----TTGGT-ACT--------------------TTGCTTAT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111591057 34 - 190429646 ------TA-TGTT----TTGGT-ACTNNNNNNNNNNNNNNNNNNNN-------- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110760237 22 - 189454096 ------TA-TGTT----TTGGT-ACT--------------------TTGCTTAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13326654 22 + 26754465 ------TA-TGTT----TTGGT-ACT--------------------TTGCTTAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4228142 22 - 5137665 ------TA-TGTT----TTGGT-ACT--------------------TTGCTTAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122937530 22 - 135778131 ------TA-TGTT----TTGGT-ACT--------------------TTGCTTAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2050069 22 + 2427316 ------TA-TGTT----TTGGT-ACT--------------------TTGCTTAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1345511 22 + 1448899 ------TA-TGTT----TTGGT-ACT--------------------TTGCTTAT i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53051906 23 - 190850796 ------TATTGTT----TTGAT-ACT--------------------TTGCTTAT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8217681 21 - 15139346 ------TATTGTT----TTGAT-ACT--------------------TTGTTT-- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7004501 23 - 7304997 ------TATTGTT----TTGAT-ACT--------------------TTGCTTAT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9422303 23 - 11631747 ------TATTGTT----TTGAT-ATT--------------------TTGCTTAT i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76450629 20 + 151834684 ------TGTTGTT----TTGGT---T--------------------TTGTTT-T i mm10.chr5 C 0 C 0 s canFam3.chr13 48033290 23 + 63241923 ------TATTGTT----TTGCT-ATC--------------------TTGCTTAG i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4129836 33 - 5279953 TGTTGTTGTTGTTTCGCTTGGT-ATT--------------------TTGCTTAT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1898491 38 + 4188776 I e micMur3.chrUn_NW_017968520v1 1808431 50 + 3286835 I e otoGar3.GL873602 8646867 278 + 8790067 I a score=117969.000000 s hg38.chr4_KI270787v1_alt 98081 20 + 111943 ATT---GTTTGATCATTAtccta s panTro5.chr4 119665335 20 - 194502333 ATT---GTTTGATCATTAtccta i panTro5.chr4 C 0 C 0 s panPan2.chr4 121079155 20 - 195804263 ATT---GTTTGATCATTATCCTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4508158 20 - 17550833 ATT---GTTTGATCATTAtccta i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69380123 20 - 118206036 ATT---GTTTGATCATTAtcctt i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110760259 22 - 189454096 ATT-AAGTTTGGTCGTTAtcctt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13326676 22 + 26754465 ATT-AAGTTTGGTCATTAtcctt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4228164 22 - 5137665 ATT-AAGTTTGGTCATTAtcctt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122937552 22 - 135778131 ATT-AAGTTTGGTCATTAtcctt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2050091 17 + 2427316 ATT-AAGTTTAGTCATTA----- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1345533 22 + 1448899 ATT-AAGTTTGGTCATTATCCCC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53051929 21 - 190850796 AAT-AAGTTTGGTCATCATCCT- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8217702 20 - 15139346 -AT-AAGTTTGGTCATCATCCT- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7004524 21 - 7304997 AAT-AAATTTGGTCATCATCCT- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9422326 21 - 11631747 AAT-AAGTTTGGTCATCATCCT- i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76450649 20 + 151834684 ATT---ATTTTGTAATTATATTA i mm10.chr5 C 0 I 1181 s canFam3.chr13 48033313 23 + 63241923 AATAAATTTTGGGCTTCATCCTG i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1898491 38 + 4188776 I e micMur3.chrUn_NW_017968520v1 1808431 50 + 3286835 I e dasNov3.JH568349 4129869 0 - 5279953 C e otoGar3.GL873602 8646867 278 + 8790067 I e rheMac8.chr5 111591091 0 - 190429646 C a score=1480.000000 s hg38.chr4_KI270787v1_alt 98101 1 + 111943 t s panTro5.chr4 119665355 1 - 194502333 t i panTro5.chr4 C 0 C 0 s panPan2.chr4 121079175 1 - 195804263 T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4508178 1 - 17550833 t i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69380143 1 - 118206036 c i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110760281 1 - 189454096 c i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13326698 1 + 26754465 c i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4228186 1 - 5137665 c i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122937574 1 - 135778131 c i chlSab2.chr7 C 0 C 0 s colAng1.NW_012119221v1 1345555 1 + 1448899 c i colAng1.NW_012119221v1 C 0 C 0 s canFam3.chr13 48033336 1 + 63241923 T i canFam3.chr13 C 0 C 0 e proCoq1.NW_012140747v1 1898491 38 + 4188776 I e micMur3.chrUn_NW_017968520v1 1808431 50 + 3286835 I e mm10.chr5 76450669 1181 + 151834684 I e dasNov3.JH568349 4129869 0 - 5279953 C e aotNan1.NW_018493494v1 9422347 0 - 11631747 C e cebCap1.NW_016107439v1 7004545 0 - 7304997 C e saiBol1.JH378162 8217722 0 - 15139346 C e calJac3.chr3 53051950 0 - 190850796 C e otoGar3.GL873602 8646867 278 + 8790067 I e manLeu1.NW_012104388v1 2050108 0 + 2427316 C e rheMac8.chr5 111591091 0 - 190429646 C a score=3064204.000000 s hg38.chr4_KI270787v1_alt 98102 382 + 111943 cttcctt-ccttcttc------------------------cttccttccttctttccttctttccttccttccctc----cttccttccttc------ctttctctctttctttccttctttccttcttctttctttccctcttttaa--tttttttatagggcctcactccatcactcaggctggagtgcagtaatgctatcttggctcactgtagcctcaatctcccaggctcaagtgatccaccccagtctccgtagcagctagaactacatggacgcaccaccacacctgaataatttttgta-ttttttgtagggatggagtttcaccatcttgcctaggctggtcttgaacccctgcacacaaacaatcttcctgcctca------------gcatcccaaattgctgggattagaggcatgagcc s panTro5.chr4 119665356 374 - 194502333 cttcctt-ccttcttc------------------------cttccttccttctttccttctttccttccttccctc----cttccttccttc--------------ctttctttccttctttccttcttctttctttccctcttttaa--tttttttatagggcctcactccatcactcaggctggagtgcagtaatcctatcttggctcactgtagcctcaatctcccaggctcaagtgatccaccccagcctccgtagcagctagaactacatggacgcaccaccacacctgaataatttttgta-ttttttgtagggatggagtttcaccatcttgcctaggctggtcttgaacgcctgcacacaaacaatcctcctgcctca------------gcatcccaaattgctgggattagaggcatgagcc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121079176 412 - 195804263 CTTCCTT-CCTTCTTCCNNNNNNNNNNNNNNNNNNNNCTTcttccttccttctttccttccttccctccttccttc----cttcctttctttctttctctttctctctttctctccttctttccttcttctttctttccctcttttaa--tttttttatagggcctcactccatcactcaggctggagtgcagtaatgctatcttggctcactgtagcctcaatctcccaggctcaagtgatccaccccagcctccgtagcagctagaactacatggacgcaccaccacacctgaataatttttgta-ttttttgtagggatggagtttcaccatcttgcctaggctggtcttgaacccctgcacacaaacaatcctcctgcctca------------gcatcccaaattgctgggattagaggcatgagcc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4508179 378 - 17550833 cttcctt-ccttcttc------------------------cttccttccttctttccttctttccttccttccctc----cttccttccttt----------ctctctttctttccttctttccttcttatttctttccctcttttaa--tttttttataggtcctcactccatcactcaggctggagtgcagtaatgctatcttggctcactgtagcctcaatctcccaggctcaagtgatccaccccagcctccgtagcagctagaactacatggacgcaccaccacacctgaataatttttgta-ttttttgtagggatggagtttcaccatcttgtctaggctggtcttgaacccctgcacacaaacaatcctcctgcctca------------gcatcccaaactgctgggattagaggcatgagcc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69380144 377 - 118206036 cttccttccctccttc------------------------cttccttccctccttccttccttccctccttccttc----cttcctttcttt------------ctctttctctctttctttccttcttctttctttccctcttttaa--tttttttatagggcctcactccatcactcaggctagaatgcagtaatgctatctcggctcactgtagcctcagactcccaggctcaagtgacccaccccagcctccgtagtagctagaactacatggatgcaccaccacacctgaataatttttgta-ttttttgtagagatggagtttcaccatcttgcctaggctggtgttgaacccctgcacgcaaacaatcctcctgcctca------------gcatcccaaattgctgggattagaggcatgagcc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111591091 338 - 190429646 --------------------------------------------------tccttccttccttccttcctctttct----------------------------ctctttctttccttctttccttcttctttctttccctcttttaa--tttttttatagggcctcactcgatcactcaggctggagtgcagtaatgcaatctt-gctcactgcagcctcaacctcccaggctcaagtgatccaccccagcctcccaagtagctagaactacatggatgcaccaccacacttgaataatttttgta-ttttttgtagagatagagtttcaccatcttacccaggctggtcttgaacccctgcacaaaagcaatcctcctgcctca------------gcatcccaaattgctgggattagaggcatgagcc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110760282 356 - 189454096 cttcctt--------c------------------------cttccttccttccttccttccttccttccttccttc----------------------------ctctttctttccttctttccttcttctttctttccctcttttaa--tttttttatagggcctcactcgatcactcaggctggagtgcagtaatgcaatctt-gctcactgcagcctcaacctcccaggctcaagtgatccaccccagcctcccaagtagctagaactacatggatgcaccaccacacttgaataatttttgta-ttttttgtagagagagagtttcaccatcttacccaggctggtcttgaacccctgcacaaaagcaatcctcctgcctca------------gcatcccaaattgctgggattagaggcatgagcc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13326699 372 + 26754465 cttcctt--------c------------------------cttccttccttccttccttccttccttccttccttccttccttcctctttct------------ctctttctttccttctttccttcttctttctttccctcttttaa--tttttttatagggcctcactcgatcactcaggctggagtgcagtaatgcaatctt-gctcactgcagcctcaacctcccaggctcaagtgatccaccccagcctcccaagtcgctagaactacatggatgcaccaccacacttgaataatttttgta-ttttttgtagagatagagtttcaccatcttacccaggctggtcttgaacccctgcacaaaagcaatcctcctgcctca------------gcatcccaaattgctgggattagaggcatgagcc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4228187 368 - 5137665 cttcctt--------c------------------------cttccttccttccttccttccttccttccttccttc----cttcctctttct------------ctctttctttccttctttccttcttctttctttccctcttttaa--tttttttatagggcctcactccatcactcaggctggagtgcagtaatgcaatctt-gcttactgcagcctcaacctcccaggctcaagtgatccaccccagcatcccaagtagctagaactacatggatgcaccaccacacctgaataatttttgta-ttttttgtagagatagagtttcaccatcttacccaggctggtcttgaacccctgcacaaaagcaatcctcctgcctca------------gcatcccaaattgctgggattagaggcatgagcc i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122937575 368 - 135778131 cttcctt--------c------------------------cttccttccttccttccttccttccttccttccttc----cttcctctttct------------ctctttctttccttctttccttcttctttctttccctcttttaa--tttttttatagggcctcactccatcactcaggttggagtgcacaaatgcaatctt-gctcactgcagcctcaacctcccaggcacaagtgatccaccccagcctcccaagtagctagaactacatggatgcaccaccacacctgaataatttttgta-ttttttgtagagacagagtttcaccatcttacctaggctggtcttcaacccctgcacaaaagcaatcctcctgcctca------------gcatcccaaattgctgggattagaggcatgagcc i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2050108 334 + 2427316 ------------------------------------------------------------------tccttccttc----cttcctctttct------------ctctttctttccttctttccttcttctttctttccctcttttaa--tttttttatagggcctcactccatcactcaggctggagtgcaataatgcaatctt-gctcactgtagcctcaacctcccaggctcaagtgatccaccccagcatcccaagtagctagaactacatggatgcaccaccacacctgaataatttttgta-ttttttgtagagatagagtttcaccatcttacccaggctggtcttgaacccctgcacaaaagcaatcctcctgcctca------------gcatcccaaattgctgggattagaggcatgagcc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1345556 371 + 1448899 cttcctt--------c------------------------cttccttccttccttccttccttccttccttccttc----cttcctctttct------------ctctttctttccttctttccttcttctttctttccctcttttaaattttttatatagggcctcactccatcactcaggctggagtgcagtaatgcaatctt-gctcactgcagcctcaacctcccaggctcaagtgatccaccccagcctcccaagtagctagaactacatggatgcgccaccacacctgaataatttttgtatttttttgtagagatagagtttcaccatcttacccaggctggtcttgaacccctgcacaaaagcaatcctcctgcctca------------gcatcccaaattgctgggattagaggcatgagcc i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53051950 335 - 190850796 ---------------A------------------------Tttccttccttccttccttccttccttccttccttc----cttcctt-------------------ccttccttccttccttcc--------------------ttAt--tttctttatagggccttactctatcactcaggctggagtatagtaatgcaatcttggctcactacagcctcaacctcccaggctcaagtgatccaccccagcttcccaagtagttaggactacatacatgcaccaccacacctgaataatttttata-ttttttgtagagatggagttccgctatcctgcccaggctggtcttgaacccctgcactaaagcaatcctcctgcctca------------gcctcccaaattgctgggattagaggcatgagtc i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8217722 311 - 15139346 ---------------A------------------------Ttttcttccttccttccttccttccttc------------------------------------------------------------------------------At--tttctttatagggccttactctatcactcaggctggagtgcagtaatgcaatcttggcttactgtagcctcaacctcccaggctcaagtgatccaccccagcttctcaggtagctaggactacatacatgaaccaccacacctgaataattttggta-ttttttgtagagatggagttccaccatcttgcccaggttggtcttgaacccctgcactaaagcaa-cctcctgcctcaggcaatcctcctgcctcccaaattgctgcgattagaggcatgagtc i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7004545 294 - 7304997 ---------------A------------------------TTTTcttccttccttccttccttccttccttccttT----------------------------------------------------------------------At--tttctttatagggtcttactctatcactcaggctggagtgtagtaatgcaatcttggctcactgtagcctcaacctcccaggctcaagtgatccaccccagcttcccaggtagctaggactatatacatgcaccactacatctgaataatttttgta-ttttttgtagagatggtgttctgccatcttgcccag--------------tctgcactaaagcaatcctcctgcctca------------gcctcccaaattgctgggattagaggcatgagtc i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9422347 329 - 11631747 ---------------A------------------------Ttttcttccttccttccttttttccttccttccttc----cttcctt-----------------tattttctttcctt----------------------------tt--tttctttatagggccttactctatcactcaggctgaagtgcagtaatgcaatcttggctcactgcagcctcaacctcccaggctcaagtgatccaccccagcttcccaagtagctaggactatatacatgcaccaccacacctgaataatttttgta-ttttttgtagagttggagttctgccatcttgcccaggctggtcttgaacccctgcactaaagcaatcctcctgcctca------------gcctctcaaattgctgggattagtggcatgagtc i aotNan1.NW_018493494v1 C 0 C 0 e proCoq1.NW_012140747v1 1898491 38 + 4188776 I e micMur3.chrUn_NW_017968520v1 1808431 50 + 3286835 I e mm10.chr5 76450669 1181 + 151834684 I e dasNov3.JH568349 4129869 0 - 5279953 C e otoGar3.GL873602 8646867 278 + 8790067 I e canFam3.chr13 48033337 0 + 63241923 C a score=140279.000000 s hg38.chr4_KI270787v1_alt 98484 15 + 111943 agtatgcccggtcCA s panTro5.chr4 119665730 15 - 194502333 agtatgcccggccCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121079588 15 - 195804263 agtatgcctggccCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4508557 15 - 17550833 agtatgcccggccCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69380521 15 - 118206036 agtatgcccggccCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111591429 15 - 190429646 agtaggctcagccCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110760638 15 - 189454096 agtaggctcagccCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13327071 15 + 26754465 agtaggctcagccCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4228555 15 - 5137665 agtaggctcagccCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122937943 15 - 135778131 agtaggctcagccCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2050442 15 + 2427316 aGTAGACTCAGCCCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1345927 15 + 1448899 agtatgcccagccCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53052285 15 - 190850796 agtatgcccggccCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8218033 15 - 15139346 agtatgcccggcTCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7004839 15 - 7304997 agtatgcccggccCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9422676 15 - 11631747 agtatgcctggccCA i aotNan1.NW_018493494v1 C 0 C 0 s dasNov3.JH568349 4129869 15 - 5279953 AATAAGTTTTGCTCT i dasNov3.JH568349 C 0 C 0 e proCoq1.NW_012140747v1 1898491 38 + 4188776 I e micMur3.chrUn_NW_017968520v1 1808431 50 + 3286835 I e mm10.chr5 76450669 1181 + 151834684 I e otoGar3.GL873602 8646867 278 + 8790067 I e canFam3.chr13 48033337 0 + 63241923 C a score=127515.000000 s hg38.chr4_KI270787v1_alt 98499 9 + 111943 TCATTCTAG s panTro5.chr4 119665745 9 - 194502333 TCATTCTAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121079603 9 - 195804263 TCATTCTAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4508572 9 - 17550833 TCATTCTAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69380536 9 - 118206036 TCATTCTAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111591444 9 - 190429646 TCATTCTAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110760653 9 - 189454096 TCATTCTAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13327086 9 + 26754465 TCATTCTAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4228570 9 - 5137665 TCATTCTAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122937958 9 - 135778131 TCATTCTAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2050457 9 + 2427316 TCATTCTAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1345942 9 + 1448899 TCATTCTAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53052300 9 - 190850796 TTATTCTAG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8218048 9 - 15139346 TTATTCTAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7004854 9 - 7304997 TTTTTCTAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9422691 9 - 11631747 TTATTCTAG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1808481 9 + 3286835 TCATTCTAT i micMur3.chrUn_NW_017968520v1 I 50 C 0 s proCoq1.NW_012140747v1 1898529 9 + 4188776 TCATTCTAT i proCoq1.NW_012140747v1 I 38 C 0 s otoGar3.GL873602 8647145 8 + 8790067 TTATCCTA- i otoGar3.GL873602 I 278 C 0 s mm10.chr5 76451850 9 + 151834684 TCATGCTGT i mm10.chr5 I 1181 C 0 s dasNov3.JH568349 4129884 9 - 5279953 TCATCCTAT i dasNov3.JH568349 C 0 C 0 e canFam3.chr13 48033337 0 + 63241923 C a score=1786903.000000 s hg38.chr4_KI270787v1_alt 98508 115 + 111943 TTTCAATCCTACTTTCCTTC-AGGCTGGTTTGAAAA-CTCACCATTATGTTACAGAGTTCAAAGAACAAACCCCAAATTATTACATACT--TTTTGGTCAATATTT-ATTTGTAATGTG---T s panTro5.chr4 119665754 115 - 194502333 TTTCAATCCTACTTTCCTTC-AGGCTGGTTTGAAAA-CTCACCATTATGTTACAGAGTTCAAAGAACAAACCCCAAATTATTACATACT--TTTTGGTCAATATTT-ATTTGCAATGTG---T i panTro5.chr4 C 0 C 0 s panPan2.chr4 121079612 115 - 195804263 TTTCAATCCTACTTTCCTTC-AGGCTGGTTTGAAAA-CTCACCATTATGTTACAGAGTTCAAAGAACAAACCCCAAATTATTACATACT--TTTTGGTCAATATTT-ATTTGCAATGTG---T i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4508581 115 - 17550833 TTTCAATCCTACTTTCCTTC-AGGCTGGTTTGAAAA-CTCACCATTATGTTACAGAGTTCAAAGAACAAACCCCAAATTATTACATACT--TTTTGGTCAATATTT-ATTTGTAATGTG---T i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69380545 115 - 118206036 TTTCAATCCTACTTTCCTTC-GGGCTGGTTTGAAAA-CTCACCATTATATTACAGAGTTCAAAGAACAAACCCCAAATTATTACATACT--TTTTGGTCAATATTT-ATTTGTAATGTG---G i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111591453 115 - 190429646 TTTCAATTCTACTTTCCTTC-AGGCTGGTTTGAAAA-CTCACCATTATATTATAGAGTTCAAATAACAAACTCCAAATTATTACATACT--TTTTGGTCAATATTT-ATTTGTAATGTG---T i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110760662 115 - 189454096 TTTCAATTCTACTTTCCTTC-AGGCTGGTTTGAAAA-CTCACCATTATATTATAGGGTTCAAATAACAAACTCCAAATTATTACATACT--TTTTGGTCAATATTT-ATTTGTAATGTG---T i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13327095 115 + 26754465 TTTCAATTCTACTTTCCTTC-AGGCTGGTTTGAAAA-CTCACCATTATATTATAGAGTTCAAATAACAAACTCCAAATTATTACATACT--TTTTGGTCAATATTT-ATTTGTAATGTG---T i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4228579 115 - 5137665 TTTCAATTCTACTTTCCTTC-AGGCTGGTTTGAAAA-CTCACCATTATATTATAGAGTTCAAATAACAAACTCCAAATTATTACATACT--TTTTGGTCAATATTT-ATTTGTAATGTG---T i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122937967 118 - 135778131 TTTCAATTCTACTTTCCTTC-AGGCTGGTTTGAAAA-CTCACCATTATATTATAGAGTTCAAATAACAAACTCCAAATTATTACATACT--TTTTGGTCAATATTT-ATTTGTAATGTGTCTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2050466 115 + 2427316 TTTCAATTCTACTTTCCTTC-AGGCTGGTTTGAAAA-CTCACCATTATATTATAGAGTTCAAATAACAAACTCCAAATTATTACATACT--TTTTGGTCAATATTT-ATTTGTAATGTG---T i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1345951 115 + 1448899 TTTCAATTCTACTTTCCTTC-AGGCTGGTTTGAAAA-CTCACCATTATATTATAGAGTTCAAATAACAAACCCCAAATTATTACATACT--TTTTGGTCAATATTT-ATTTGTAATGTG---T i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53052309 117 - 190850796 TTTCAATTCTACTTTCCTTC-AGACTGGTTTGAAAA-TTCACCATTATATTATAGAGTTCAAAGAACAAACCTCAAATTATTACATATTTCTTTTGGTCAATATTT-ATTTGTAATGTG---T i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8218057 117 - 15139346 TTTCAATTCTACTTTCCTTC-AGACTGGTTTGAAAA-TTCACCATTATATTATGGAGTTCAAAGAACAAACCTCAAATTACTACATTTTTCTTTTGGTCAATATTT-ATTTGTAGTGTG---T i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7004863 117 - 7304997 TTTCAATTCTACTTTCCTTC-AGACTGGTTTGAAAA-TTCACCATTATATTATAGAGTTCAAAGAACAAACCTCAAATTATTACATATTTCTTTTGGTCAATATTT-ATTTGTAGTGTG---T i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9422700 117 - 11631747 TTTCAATTCTACTTTCCTTC-AGACTGGTTTGAAAA-TTCACCATTATATTATAGAGTTCAAAGAACAAACCTCAAATTATTACATATTTCTTTTGGTCAATATTT-ATTTGTAATGTG---T i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1808490 117 + 3286835 TTTCAATCCTAGTTTCCTTC-AGGTT-GTTTGAAAA-CTCACCATTACATTACAGAGTTCAAGGCACAAACCCCAAACTATTACATATGTCTTTTGGTCAATATTCAATTTGTAACATG---T i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1898538 117 + 4188776 TTTCAATTCTAGTTTCCTTC-AGGTT-GTTTGAAAA-CTCACCATTATATTACAGAGTTTAAGGCACAAACCCCAAACTATTACATATTTCTTTTGGTTGGTATTCAATTTGTAACATG---T i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8647153 118 + 8790067 TTTCAATTCTAATTTTCTTCAAGGCG-ATTTGAAAA-CTCACCATTATATCACAGTGTTGAAAGCACAAACCCCACACTATCACATTTTTCTTTTGGTCAATATTTAATTTGCAGCATG---T i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76451859 102 + 151834684 TTTCAGTTCTACTTTCCTTT-AGGTAGATCTGAAAATCTCACCGTTAAATTACTGACTTTATAACATAAATTTT-----------------GTTTGGTCAATATTAAATGTGTAACATG---T i mm10.chr5 C 0 I 226 s canFam3.chr13 48033337 116 + 63241923 TTTCAGTTTTAGTCTCCTTT-TG--TGGTTTGAAAA-TTCATCATTACATTACAGAGTTCCAAGTACAAATCCCAAACTACTACATATTTCTCTTGATCAATATTGAATTTGTAACATG---T i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4129893 116 - 5279953 ATTCAACCCTTGTTTAAATT-AGGTGGGTTTGAAAA-GTCTTCATTCCTTTA-AGAGTTTAAAATGCAAGCCCCAAACAAGTATATATTTCTTTTAGTGAAGATTA-AATTTTAACAAG---T i dasNov3.JH568349 C 0 C 0 a score=1377090.000000 s hg38.chr4_KI270787v1_alt 98623 91 + 111943 CTTTTGTCTTTGAAATTTTGTTAAACTCTATTCACTACCTGCCACTGTC--TTTCTTAGGGGACTGCCAAGACCTAAATGGAACATTTTCGTG s panTro5.chr4 119665869 91 - 194502333 CTTTTGTCTTTGAAGTTTTGTTAAACTCTATTCACTACCTGCCACTGCC--TTTCTTAGGGGACTGCCAAGACCTAAATGGAACATTTTCGTG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121079727 91 - 195804263 CTTTTGTCTTTGAAGTTTTGTTAAACTCTATTCACTACCTGCCACTGCC--TTTCTTAGGGGACTGCCAAGACCTAAATGGAACATTTTCGTG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4508696 90 - 17550833 CTTTTGTCTTTGAAGTTTTGTTAAACTCTATTCACTACCTGCCACTGTC--TTTCTTAGAGGACTGCCAAGA-CTAAATGGAACATTTTCGTG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69380660 91 - 118206036 CTTTTGTCTTGGAAGTTTTGTTAAACTCTATTCACTACCTGCCACTGCC--TTTCTTAGGGGACTGCCAAGACCTAAATGGAACATTTTTGTG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111591568 91 - 190429646 CTTTTGTCTCTGAAGTTTTGTTAAACTCTATTCAATACCTGCCACTGCC--TTTTTTGGGGAACTGCCAAGACCTAAATGGAACATTTTTGTG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110760777 91 - 189454096 CTTTTGTCTCTGAAGTTTTGTTAAACTCTATTCAATACCTGCCACTGCC--TTTTTTGGGGAACTGCCAAGACCTAAATGGAACATTTTTGTG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13327210 93 + 26754465 CTTTTGTCTCTGAAGTTTTGTTAAACTCTATTCAATACCTGCCACTGCCTTTTTTTTAGGGAACTGCCAAGACCTAAATGGAACATTTTTGTG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4228694 91 - 5137665 CTTTTGTCTCTGAAGTTTTGTTAAACTCTATTCAATACCTGCCACTGCC--TTTTTTAGGGAACTGCCAAGACCTAAATGGAACATTTTTGTG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122938085 91 - 135778131 CTTTTGTCTCTGAAGTTTTGTTAAACTCTATTCAATACCTGCCACTGCC--TTTTTTAGGGAACTGCCAAGACCTAAATGGAACATTTTTGTG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2050581 91 + 2427316 CTTTTGTCTCTGAAGTTTTGTTAAACTCTATTCAATACCTGCCACTGCC--TTTTTTAGGGAACTGCCAAGACCTAAATGGAACATTTTTGTG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1346066 91 + 1448899 CTTTTGTCTCTGAAGTTTTGTTAAACTCTATTCACTACCTGCCACTGCC--TTTTTTAGGGGACTGCCAAGACCTAAATGGAACATTTTTGTG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53052426 91 - 190850796 CTTTTGTCTCTGAAGTTTTGTTAAACTCTATTCACTATCTGCAACTGCC--TTTCTTAGGGGACTGCCAAGACCCAAGTGGAACATTTTTGTG i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8218174 91 - 15139346 CTTTTGTCTCTGAAGTTTCATTAAACTCTATTCACTATCTGCAACTGCC--TTTCTTAAGGGACTGCCAAGACCCAAATGGAACATTTTTGTG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7004980 90 - 7304997 CTTTTGTCTCTGAAGTTTTGTTAAACTCTATTCACCATCTGCAACTGCC--TTTCTTAGGGGGCTGCCAAGACCCAAAT-GAACATTTTTGTG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9422817 91 - 11631747 CTTTTGTCTTTGAAGTTTTGTTAAACTCTATTCACTATCTGCAACTGCC--TTTTTTAGGGGACTGCCAAGACCCAAATGGAACATTTTTGTG i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1808607 90 + 3286835 CTTTTGTCTTT-AAGCTTTGTTAAACTCTATTCACCATCTACCACTGCC--TTTCCTAGGGGACTGCCAATACTCAAATGGAATATTTTTGTA i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1898655 89 + 4188776 CTTTTGTCTTT-AAGCTTTGTTAAACTCTATTCACCATCTACCACTGCC--TTTCCTA-GGGACTGCCAACACCCAAATGGAATGTTTTTGTG i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8647271 88 + 8790067 CTTTTGT-TTT-AAGCCTCAGTCAACTCTGTTCCCCACCTGCC-CCACC--TCTCTTAGAGGACTGCCAAGACCCAAGTGGAATATTTTTGTG i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76452187 89 + 151834684 cttttgtgtCCGAAGTTCCATTTGACTCTATTCTCCATCTGTCACCTCT--CTTTACAGGGAACTGACATGACC--AGGAGAATATTTTTGTG i mm10.chr5 I 226 I 188 s canFam3.chr13 48033453 81 + 63241923 CTTTTGTCTTT-AAGTATTGTTAAACTGTACAAACTATCTGCCACTGTT--TTTCTTAG---------CAGTCCTAGATAAAACATTTTTGCA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4130009 70 - 5279953 CTTCCATCTTTCAAGTTT--TTAAACTCTATTCACAATCTGACACTAGG--TTTCTTT-----CTGC--------------AATATTTTTGTA i dasNov3.JH568349 C 0 C 0 a score=1718383.000000 s hg38.chr4_KI270787v1_alt 98714 103 + 111943 TTACTTACTCTTGATA---GATTGCAGTCTGGCAAAGTTGGAGTTGCACTGTACTTGGCAAACTG-AAAAATGACCTATTCTTCCTCAGCCATAGTTGAATCTT-CAA s panTro5.chr4 119665960 103 - 194502333 TTACTTACTCTTGATA---GATTGCAGTCTGGCAAAGTTGGAGTTGCACTGTACTTGGCAAACTG-AAAAATGACCTATTCTTCCTCAGCCATAGTTGAATCTT-CAA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121079818 103 - 195804263 TTACTTACTCTTGATA---GATTGCAGTCTGGCAAAGTTGGAGTTGCACTGTACTTGGCAAACTG-AAAAATGACCTATTCTTCCTCAGCCATAGTTGAATCTT-CAA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4508786 103 - 17550833 TTACTTACTCTTGATA---GATTGCAGTCTGGCAAAGTTGGAGTTGCACTGTACTTGGCAAACTG-AAAAATGACCTATTCTTCCTCAGCCATAGTTGAATCTT-Caa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69380751 103 - 118206036 TTACTTACTCTTGATA---GATTGCAGTCTGGCAAAGTTGGAGTTGCACTGTACTTGGCTAACTG-AAAAATGACCTATTCTTCCTCAGCCATAGTTGAATCTT-CAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111591659 103 - 190429646 TTACTTACTTTTGACA---GATTGCAGTCTGGCAAAGTTGGAGCTGCACTGTACTTGGCAAACTG-AAAAATGACCTATTCTTCCTTAGCCATAGTTGAATCTT-Caa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110760868 103 - 189454096 TTACTTACTTTTGACA---GATTGCAGTCTGGCAAAGTTGGAGCTGCACTGTACTTGGCAAACTG-AAAAATGACCTATTCTTCCTTAGCCATAGTTGAATCTT-CAA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13327303 103 + 26754465 TTACTTACTTTTGACA---GATTGCAGTCTGGCAAAGTTGGAGCTGCACTGTACTTGGCAAACTG-AAAAATGACCTATTCTTCCTTAGCCATAGTTGAATCTT-Caa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4228785 103 - 5137665 TTACTTACTTTTGATA---GATTGCAGTCTGGCAAAGTTGGAGCTGCACTGTACTTGGCAAACTG-AAAAATGACCTATTCTTCCTTAGCCATAGTTGAATCTT-Caa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122938176 104 - 135778131 TTACTTACTTTTGATA---GATTGCAGTCTGGCAAAGTTGGAGCTGCACTGTACTTGGCAAACTG-AAAAATGACCTATTCTTCCTTAGCCATAGTTGAATCTTCCaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2050672 103 + 2427316 TTACTTACTTTTGATA---GATTGCAGTCTGGCAAAGTTGGAGCTGCACTGTACTTGGCAAACTG-AAAAATGACCTATTCTTCCTTAGCCATAGTTGAATCTT-CAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1346157 101 + 1448899 TTACTTACTTTTGATA---GATTGCAGTCTGGCAAAGTTGGAGCTGCACTGTACTTGGCAAACTG-AAAAATGACCTATTCTTCCTTAGTCATAGTTGAATCTT---a i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53052517 103 - 190850796 TTACTTACTCTTGATA---GATTGTAGTTTGGCAAAGTTGGAGTTGCACTGTACTTGGCAAACTG-AAAAATGACCTATTCTTCTTTAGCCATACTTTAATCTT-CAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8218265 103 - 15139346 TTACTTACTCTTGATA---GATTGTAGTTTGGCAAAGTTGGAGTTGCACTGTACTTGGCAAACTG-AAAAATGACCTATTATTCTTTAGCAATACTTTAATCTT-CAA i saiBol1.JH378162 C 0 I 311 s cebCap1.NW_016107439v1 7005070 103 - 7304997 TTACTTACTCTTGACA---GATTGTAGTTTGGCAAAATTGGAGTTGCACTGTACTTGGCAAACTG-AAAAATGACCTATTCTTCTTTAGCAATACTTTAATCTT-CAa i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9422908 106 - 11631747 TTACTTACTCTTGATAGATGATTGTAGTTTGGCAAAGTTGGAATTGCACTGTACTTGGCAAACTA-AAAAATGACCTATTCTTCTTTAGCCATACTTTATTCTT-Caa i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1808697 103 + 3286835 TCACTTACTCTTGATA---GATTGCAGTCTGGCAAAGTTGGAGTTGTGCTTCATTTGGCAAACTG-TAAAATGACCAATACCTCTTTAGAGATAGTTGAATCTT-taa i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1898744 103 + 4188776 TCACTTACTCTTGATA---GATTGCAGTCTGGCAAAGTTGGAGTTGTGCTTCATTGGGCAAACTG-TGAAATGACCGATTCCTCTTTAGACATAGTTGAATCTT-taa i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8647359 103 + 8790067 TCACTCACTCTTGATA---GATTGTCATCTGGCAAAGTCGGAGTTGTGTTTCATTTGGCACACTG-CAAAGTGACCAATCCCACTTTAGACACAGTTGAATCTT-TAA i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76452464 100 + 151834684 TCATTTACTCTTGGTA---CACCACAGTCTGGTAAAGTTGGAGCTGTGCTTCATCTGGAAGATTGCAAAGATGACCTGTCCCTCTTTAGGTATAATTGGCTCA----- i mm10.chr5 I 188 C 0 s canFam3.chr13 48033534 103 + 63241923 TCACTTACTCTTGATA---GAATGTTGTCTGGCAAAGTTGGAGCTGCACTTCATTTTGCAAACTA-CGAAATGACCTATTCTTCTTTAGATATAGTTGAGTCTT-AAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4130079 99 - 5279953 ----TCACTCTTGATA---GATTGCAGTCTGACAAAATTGGAGCTGTACTTCATTTGGCAAACTG-TAAAATGATCTATTTTTTTTTAGATAAAATTGAAACTT-Taa i dasNov3.JH568349 C 0 C 0 a score=64288.000000 s hg38.chr4_KI270787v1_alt 98817 17 + 111943 AAGAA---------AATAAAGA---AAAT s panTro5.chr4 119666063 17 - 194502333 AAGAA---------AATAAAGA---AAAT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121079921 17 - 195804263 AAGAA---------AATAAAGA---AAAT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4508889 17 - 17550833 aagaa---------aataaaga---aaat i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69380854 9 - 118206036 AAGAA---------AAT-----------T i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111591762 26 - 190429646 aaaaaaaaaataataataagga---aaat i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110760971 26 - 189454096 aaaaaaataataataataagga---aaat i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13327406 23 + 26754465 aaaaa---aaaaataataagga---aaat i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4228888 23 - 5137665 aaaaa---aaaaaaaataagga---aaat i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122938280 24 - 135778131 aaaaaa--aaaaaaaataagga---aaat i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2050775 24 + 2427316 AAAAAA--AAAAGTAATAAGGA---AAAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1346258 23 + 1448899 aaaaa---aaaaaaaaaaagga---aaat i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53052620 16 - 190850796 -GAAA---------AGTAAAGA---AAAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8218679 16 - 15139346 ----a---------aataaataaataaat i saiBol1.JH378162 I 311 C 0 s cebCap1.NW_016107439v1 7005173 16 - 7304997 -aaaa---------aataaaga---aaat i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9423014 15 - 11631747 --aaa---------aataaaga---aaat i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1808800 15 + 3286835 -----------aagaataaagg---aaat i micMur3.chrUn_NW_017968520v1 C 0 C 0 s proCoq1.NW_012140747v1 1898847 15 + 4188776 -----------aagaagaaagg---aaat i proCoq1.NW_012140747v1 C 0 C 0 s otoGar3.GL873602 8647462 15 + 8790067 -----------CAGAAGAAAGA---AAAT i otoGar3.GL873602 C 0 C 0 s mm10.chr5 76452564 17 + 151834684 --------Aagaagaaagagaa---aaa- i mm10.chr5 C 0 I 172 s canFam3.chr13 48033637 13 + 63241923 -------------AAAAAAAGA---AAAT i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4130178 23 - 5279953 aaaaa---aagaaaagaaaaga---aaga i dasNov3.JH568349 C 0 C 0 a score=21834.000000 s hg38.chr4_KI270787v1_alt 98834 6 + 111943 AAAAA-A s panTro5.chr4 119666080 5 - 194502333 TTAAA-- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121079938 5 - 195804263 TTAAA-- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4508906 7 - 17550833 aaaaaaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69380863 5 - 118206036 TAAAA-- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111591788 7 - 190429646 aaataaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110760997 7 - 189454096 aaataaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13327429 7 + 26754465 aaataaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4228911 7 - 5137665 aaataaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122938304 7 - 135778131 aaataaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2050799 7 + 2427316 AAATAAA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1346281 7 + 1448899 aaataaa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53052636 7 - 190850796 AAATAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8218695 7 - 15139346 aaataaa i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7005189 7 - 7304997 aaataaa i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9423029 7 - 11631747 aaataaa i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1808815 6 + 3286835 aaataa- i micMur3.chrUn_NW_017968520v1 C 0 I 2 s proCoq1.NW_012140747v1 1898862 6 + 4188776 aaataa- i proCoq1.NW_012140747v1 C 0 I 2 s otoGar3.GL873602 8647477 6 + 8790067 AAATAA- i otoGar3.GL873602 C 0 N 0 s canFam3.chr13 48033650 7 + 63241923 AAACAAA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4130201 6 - 5279953 aaaTAA- i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76452581 172 + 151834684 I a score=991575.000000 s hg38.chr4_KI270787v1_alt 98840 76 + 111943 TAATACCTTACAGAAAGGCTAAAGGAAAATTATTATGATGC--------TTTGCTATTATCTCA-----------AATTCCTTCAGTGTTTCTGA s panTro5.chr4 119666085 75 - 194502333 -AAAAGCTTATAGAAAGGCTAAAGGAAAATTATTATAATGC--------TTTGCTATTATCTCA-----------AATTCCTTCAGTGTTTCTGA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121079943 75 - 195804263 -AAAAGCTTATAGAAAGGCTAAAGGAAAATTATTATAATGC--------TTTGCTATTATCTCA-----------AATTCCTTCAGTGTTTCTGA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4508913 76 - 17550833 taaTACCTTATAGAAAGGCTAAAGGAAAATTATTATAATGC--------TTTGCTATTATCTCA-----------AATTCCTTCAGTGTTTCTGA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69380868 75 - 118206036 -AATAGCTTATAGAAAGGCTAAAGGAAAATTATTATAATGC--------TTTGCTATTATCTCA-----------AATTCCTTCAGTGTTTCTGA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111591795 76 - 190429646 taaTAGCTTATAGAAAGGTTAAAGGAAAATTATTATAATGC--------TTTGCTATTATCACA-----------AATTCCTTCAATGTTTCTGA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110761004 76 - 189454096 taaTAGCTTATAGAAAGGTTAAAGGAAAATTATTATAATGC--------TTTGCTATTATCACA-----------AATTCCTTCAATGTTTCTGA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13327436 76 + 26754465 taaTAGCTTATAGAAAGGTTAAAGGAAAATTATTATAATGC--------TTTGCTATTATCACA-----------AATTCCTTCAATGTTTCTGA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4228918 76 - 5137665 taaTAGCTTATAGAAAGGTTAAAGGAAAATTATTATAATGC--------TTTGCTATTATCACA-----------AATTCCTTCAATGTTTCTGA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122938311 76 - 135778131 taaTAGCTTATAGAAAGGTTAAAGGAAAATTATTATAATGC--------TTTGCTATTATCACA-----------AATTCCTTCAATGTTTCTGA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2050806 76 + 2427316 TCATAGCTTATAGAAAGGTTAAAGGAAAATTATTATAATGC--------TTTGCTATTATCACA-----------AATTCCTTCAATGTTTCTGA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1346288 63 + 1448899 taaTAGCTTATAGAAAGGTTAAAGGAAAATTAT---------------------TATTATCACA-----------AATTCCTTCAATGTTTCTGA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53052643 84 - 190850796 TAATAGCTTATATAAAGGCTAAAGGAAAATGATTATAATGCTTTGCTAATTTGCTATTATCTCA-----------AATTCCTTCAGTATTTCTGA i calJac3.chr3 C 0 I 1 s saiBol1.JH378162 8218702 76 - 15139346 caaTAGCTTATAGAAAGGCTAAAGGAAAATTATTATAATGC--------TTTGCTATTATCTCA-----------AATTCCTTCAATATTTCTGA i saiBol1.JH378162 C 0 I 1 s cebCap1.NW_016107439v1 7005196 76 - 7304997 taTTAGCTTATAGAAAGGCTAAAGGAAAATGATTATAATGC--------TTTGCTATTATCTCA-----------AATTTCTTCAATATTTCTGA i cebCap1.NW_016107439v1 C 0 I 1 s aotNan1.NW_018493494v1 9423036 87 - 11631747 taaTAGCTTATAGAAAGGCTAAAGGAAAATGATTATAATGC--------TTTGCTATTATCTCAAAGAAGATAATAATTCCTTCAATATTTCTGA i aotNan1.NW_018493494v1 C 0 I 1 s micMur3.chrUn_NW_017968520v1 1808823 76 + 3286835 aaataGCTTAGAGAAGGACTAAAGGAAAATGATTATGAAGC--------TCTTCTGTTATCTGA-----------GAGCCCTTTGATGTTTCTGA i micMur3.chrUn_NW_017968520v1 I 2 I 1 s proCoq1.NW_012140747v1 1898870 76 + 4188776 aaataGCTTAGAGAAGGGTTAAAGGAAAATGATTATGAAGC--------TCTTCTGTTATCTCA-----------GAGCCCTTTGATGTTTCTGA i proCoq1.NW_012140747v1 I 2 I 1 s canFam3.chr13 48033657 75 + 63241923 TAATAGCTTAGAGAAGAGTTAAAAGAAAATGATTATGAGGG--------TCTG-TATTAGCTCA-----------GATCCCTGCAAAGCCTCTGA i canFam3.chr13 C 0 I 1 s dasNov3.JH568349 4130207 76 - 5279953 TAACAGCTTCGAGAAGGGATGAAAGAAAATGATTATGACTC--------TCTGCTGTCGGACCA-----------AATCCCTTCAATATTCCTGA i dasNov3.JH568349 C 0 I 1 e mm10.chr5 76452581 172 + 151834684 I a score=963080.000000 s hg38.chr4_KI270787v1_alt 98916 64 + 111943 AACCAAAACAAGA-----ATAGTTTGTATGTGTTCTCCAAGGTCTAGTCA-TTTTTTATGTGATAGATGC s panTro5.chr4 119666160 64 - 194502333 AACCAAAACAAGA-----ATAGTTTGTATGTGTTCTCCAAGGTCTAATCA-TTTTTTATGTGATAGATGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121080018 64 - 195804263 AACCAAAACAAGA-----ATAGTTTGTATGTGTTCTCCAAGGTCTAATCA-TTTTTTATGTGATAGATGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4508989 64 - 17550833 AACCAAAACAAGA-----ATAGTTTGTATGTGTTCTCCAAGGTCTAGTCA-TTTTTTATGTGATAGATGC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69380943 64 - 118206036 AACCAAAACAAGA-----ATAGTTTGTATGTGTTCTCCAAGGTCTAGTCA-TTTTTTATGTGATAGATGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111591871 64 - 190429646 AACCAAAACAAGA-----ATAGTTTATATGTGTTCTCCAAGGTCTAGTCA-TTTTTTATGTGATAGATGC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110761080 64 - 189454096 AACCAAAACAAGA-----ATAGTTTATATGTGTTCTCCAAGGTCTAGTCA-TTTTTTATGTGATAGATGC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13327512 64 + 26754465 AACCAAAACAAGA-----ATAGTTTATATGTGTTCACCAAGGTCTAGTCA-TTTTTTATGTGATAGATGC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4228994 64 - 5137665 AACCAAAACAAGA-----ATAGTTTATATGTGTTCTCCAAGGTCTAGTCA-TTTTTTATGTGATAGATGC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122938387 64 - 135778131 AACCAAAACAAGA-----ATAGTTTATATGCGTTCTCCAAGGTCTAGTCA-TTTTTTATGTGATAGATGC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2050882 65 + 2427316 AACCAAAACAAGA-----ATAGTTTATATGTGTTCTCCAAGGTCTAGTCATTTTTTTATGTAATAGATGC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1346351 64 + 1448899 AACCAAAACAAGA-----ATAGTTTGTATGTGTTCTCCAAGGTCTAGTCA-TTTTTTATGTGATAGATGC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53052728 64 - 190850796 AACCAAAACAAGA-----ATAGTTTGTATGTGTTCTCCAAAGTCTAGTCA-TTTTTTATGTGATAGATGC i calJac3.chr3 I 1 C 0 s saiBol1.JH378162 8218779 64 - 15139346 AACCAAAACAAGA-----ATAGTTTGTATGTGGTCTCCAAAGTTCAGTCA-TTCTTTATGTGATAGACAC i saiBol1.JH378162 I 1 C 0 s cebCap1.NW_016107439v1 7005273 64 - 7304997 AACCAAAAGAAGA-----ATAGTTTGTATGTGTTCTCTAAAGTCTAGTCA-TTTTTTATGTGATAGATGC i cebCap1.NW_016107439v1 I 1 C 0 s aotNan1.NW_018493494v1 9423124 64 - 11631747 AACAAAAACAAGA-----ATAGTTTGTATGTGTTCTCCAAAGTCTAGTCA-TTTTTTATGTGATAGACGC i aotNan1.NW_018493494v1 I 1 C 0 s micMur3.chrUn_NW_017968520v1 1808900 60 + 3286835 AACCAATACATGA-----GCAGTTTTTATGTGTTCTCCAAAGTCTA-----TTTTTCACATGGTAGATGC i micMur3.chrUn_NW_017968520v1 I 1 C 0 s proCoq1.NW_012140747v1 1898947 60 + 4188776 AACCAAAACAAGA-----ACAGTTTTTATGTGTTCTCCAAAGTCTA-----TTTTTCACATGGTAGATGC i proCoq1.NW_012140747v1 I 1 C 0 s mm10.chr5 76452753 63 + 151834684 AACCAAAACAAGA-----ATGCCTTTTATGTGTTCCCCAAATGCTGGCT--TTCTTAACATGATGGATGC i mm10.chr5 I 172 C 0 s canFam3.chr13 48033733 65 + 63241923 AACAAAAACTAGA-----GTTGATTTTATATGTTCTCCAAAGTGTAGCCATTTTTTTATGTGGTAGACGT i canFam3.chr13 I 1 I 183 s dasNov3.JH568349 4130284 70 - 5279953 GAACAAAATGAGAGTATTACAGTTTTTATGTGTTCTACAAAGTCTAGCCATTTTTTCACTTGGTGGATGT i dasNov3.JH568349 I 1 C 0 a score=1107197.000000 s hg38.chr4_KI270787v1_alt 98980 70 + 111943 CAGGAAGTAAA------------------ATCTTCTATATAGAGATTCATGAGAATTTGATATGATCCTAATAAAGCAAAACTTCTCC s panTro5.chr4 119666224 70 - 194502333 CAGGAAGTAAA------------------ACCTTCTATATACAGATTCACGAGAATTTGATATGATCCTAATAAAGCAAAACTTCTCC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121080082 70 - 195804263 CAGGAAGTAAA------------------ACCTTCTATATACAGATTCACGAGAATTTGATATGATCCTAATAAAGCAAAACTTCTCC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4509053 70 - 17550833 CAGGAAGTAAA------------------ATCTTCTATATAGAGATTCATGAGAATTTGATATGATCCTAATAAAGCAAAACTTCTCC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69381007 70 - 118206036 CAGGAAGTAAA------------------ATCTTCTATATACAGATTCGTGAGAATTTGATATGATCCTAATAAGGCAAAACTTCTCC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111591935 70 - 190429646 CAGGAAGTAAA------------------ATCTTCTATATACAGATTCATGAGAATTTGATATGAGCCTAATAAAGCAAAACTTCTCC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110761144 70 - 189454096 CAGGAAGTAAA------------------ATCTTCTATATACAGATTCATGAGAATTTGATATGAGCCTAATAAAGCAAAACTTCTCC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13327576 70 + 26754465 CAGGAAGTAAA------------------ATCTTCTATATACAGATTCATGAGAATTTGATATGAGCCTAATAAAGCAAAACTTCTCC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4229058 70 - 5137665 CAGGAAGTAAA------------------ATCTTCTATATACAGATTCATGAGAATTTGATATAAGCCTAATAAAGCAAAACTTCTCC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122938451 70 - 135778131 CAAGAAGTAAA------------------ATCTTCTATATACAGATTCATGAGAATTTGATATGATCCTAATAAAGCAAAACTTCTCC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2050947 70 + 2427316 CAGGAAGTAAA------------------ATCTTCTATATACAGATTCATGAGAATTTGATATGAGCCTAATAAAGCAAAACTTCTCC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1346415 70 + 1448899 CAGGAAGTAAA------------------ATCTTCTATATACAGATTCATAAGAATTTGATATGATCCTAATAAAGCAAAACTTCTCC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53052792 70 - 190850796 CAGGAAGTAAA------------------GTCTTCTCTATACAGATTCATGAGAATTTGGTATGATCCTAATAAAGCAAAACTTCTCC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8218843 70 - 15139346 CAGGAAGTAAA------------------ATCTTCTATATACAGATTCGTGAGAATTTAGTATGATCCTAATAAAGCAAAACTTTGCC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7005337 70 - 7304997 CAGGAAGTAAA------------------ATCTTCTGTATACAGATTTATGAGAATTTGGTATGATCCTAATAAAGCAAAACTTATCC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9423188 70 - 11631747 CAGGAAGTAAA------------------ATCTTCTATATACAGATTCATGAGAATTTGGTATAATTCTAATAAAGCAAAACTTCTCC i aotNan1.NW_018493494v1 C 0 C 0 s micMur3.chrUn_NW_017968520v1 1808960 70 + 3286835 CGGTAAGTAAA------------------ATCTTCTATATACAGATTCATGAGAATTTAGTATGATTCTAATAGAGCAAAACTTCTCC i micMur3.chrUn_NW_017968520v1 C 0 N 0 s proCoq1.NW_012140747v1 1899007 70 + 4188776 CGGTAAGTAAA------------------ATCTTCTACATACAGATTCATGAGAATTTAGTATGATCCTAATAGAGCAAAACTTCTCC i proCoq1.NW_012140747v1 C 0 N 0 s mm10.chr5 76452816 70 + 151834684 TGGGAAGTACA------------------ATCTTCTGTATGCAGAATCTTGAGAATTTGGCATGATCCTAATAAAGCAAAAATCCCCT i mm10.chr5 C 0 C 0 s canFam3.chr13 48033981 88 + 63241923 tagtaaataaataaatcttttaaaaaaaCATCTTCCTTATCTGGATTCATGAGAATTTGGCATGATCCTAATAGAGCAAAACTTCTCC i canFam3.chr13 I 183 C 0 s dasNov3.JH568349 4130354 67 - 5279953 TGGGGAGCAGA------------------ACTTCCTATCTCTGGATTCATGAGAACTTGGTCTGATCCTAAGAGAGAAAACCTGC--- i dasNov3.JH568349 C 0 C 0 a score=1353629.000000 s hg38.chr4_KI270787v1_alt 99050 115 + 111943 TATGGAA------GGGAAGGAGACATCAGATCCAGTAAGG--------------AGCACTC-TGA------ACTTCCGTGATGCTAGGCCACCTACCTCCATGAAGAAATTGGTAAGGAATCTTTCAGAACCTAGCTTGCCC s panTro5.chr4 119666294 115 - 194502333 TATGGAA------GGGAAGGAGACATCAGATCCAGTAAGG--------------AGCACTC-TGA------ACTTCCGTGATGCTAGGCCACCTACCTCCATGAAGAAATTGGTAAGGAATCTTTCAGAACCTAGCTTGCCC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121080152 115 - 195804263 TATGGAA------GGGAAGGAGACATCAGATCCAGTAAGG--------------AGCACTC-TGA------ACTTCCGTGATGCTAGGCCACCTACCTCCATGAAGAAATTGGTAAGGAATCTTTCAGAACCTAGCTTGCCC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4509123 115 - 17550833 TATGGAA------GGGAAGGAGACATCAGATCCAGTAAGG--------------AGCACTC-TGA------ACTTCCGTGATGCTAGGCCACCTACCTCCATGAAGAAATTGGTAAGGAGTCTTTCAGAACCTAGCTTGCCC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69381077 115 - 118206036 TATGGAA------GGGAAGGAGACATCAGATCCAGCAAGG--------------AGCACTC-TGA------ACTTCCGTGATGCTAAGCCACCTACCTCCATGAAGACATTGGTAAGGAATCTTTCAGAACCTAGCTTGCCC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111592005 116 - 190429646 TATGGAA------GGGAAGGAGACATCAGATACAGTAAGG--------------AGCACTCATGA------ACTTCTGTGATGCTAGGCCAACTACCTCCATGAAGAAATTGGTAAGGAATCTTTCAGAACCTAGCTTGCTC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110761214 116 - 189454096 TATGGAA------GGGAAGGAGACATCAGATACAGTAAGG--------------AGCACTCATGA------ACTTCTGTGATGCTAGGCCAACTACCTCCATGAAGAAATTGGTAAGGAATCTTTCAGAACCTAGCTTGCTC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13327646 116 + 26754465 TATGGAA------GGGAAGGAGACATCAGATACAGTAAGG--------------AGCACTCATGA------ACTTCTGTGATGCTAGGCCAACTACCTCCATGAAGAAATTGGTAAGGAATCTTTCAGAACCTAGCTTGCTC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4229128 116 - 5137665 TATGGAA------GGGAAGGAGACATCAGATACAGTAAGA--------------AGCACTCATGA------ACTTCTGTGATGCTAGGCTAACTACCTGCATGAAGAAATTGGTAAGGAATCTTTCAGAACCTAGCTTGCTC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122938521 116 - 135778131 TATGGAA------GGGAAGGAGACATCAGATACAGTAAGG--------------AGCACTCATGA------ACTTCTGTGATGCTAGGCCAACTACCTCCATGAAGAAATTGGTAAGGAATCTTTCAGAACCTAGCTTGCTC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2051017 116 + 2427316 TATGGAA------GGGAAGGAGACATCAGATACAGTAAGG--------------AGCACTCATGA------ACTTCTGTGATGCTAGGCCAACTACCTCCATGAAGAAATTGGTAAGGAATCTTTCAGAACCTAGCTTGCTC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1346485 116 + 1448899 TATGGAA------GGGAAAGAAACATCAGAGACAGTAAGG--------------AGCACTCATGA------ACTTCTGTGATGCTAGGCCAACTACCTCCATGAAGAAATTGGTAAGGAATCTTTCAGAACCTAGCTTGCCC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53052862 116 - 190850796 TATGGAA------GGGAAGGAGACATCAGATACAGTAAGG--------------AGCATTCATGA------ACTTCCGTGATGCTGGGTCAACTACCTCCACGAAGAAATTGGTAAGGAATCTTTCAGAACTTAGATTTCCC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8218913 116 - 15139346 TATGGAA------GGGAAGGAGACATCAGATACAGTAAGT--------------AGCATTCATGA------ACTTCCGTGATGCTGGGTCAACTACCTCCATGAAGAAATTGGTAAGGAATCTTTCAGAACCTAGATTTCCC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7005407 116 - 7304997 TATGGAA------GGGAAGGAGACATCAGATACAGTAAGG--------------AGCATTCATGA------ATTTCCGTGATGCTGGGTCAACTACCTCCATGAAGAAATTGGTAAGGAACCTTTCAGAACGTAGATTTCCC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9423258 116 - 11631747 TATGGAA------GGGAAGTAGACATCAGATACAGTAAGG--------------AGCATTCATGA------ACTTCCATGATCCTGGGTCAACTACGTCCATGAAGAAATTGGTAAGGAATCTTTCAGAACCTAGATTTCCG i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76452886 129 + 151834684 TGTAGAA------AGGAAGGAGATGTCACATACAGCAGGAACATGACCCTCCC-AGTCCCCATGA------GCTTCCACGGTGCCAGGCGGCCAACCTCAGTGGAGAAGCTGGTAAGCAATCATCCCTAACTGAGCTTGCCC i mm10.chr5 C 0 I 369 s canFam3.chr13 48034069 133 + 63241923 TGTGGAAGAGAAGGAGAAGGAGACATTG---ATAGTGAGGAAGTGGTCTTCCCAAATACTCATGA------AAATCCATGCTGTTAGGCTCCCTACCTCTGTGATGAAACTGGTAAGGAACTCATCAGAACCTAGCTTGCTC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4130421 109 - 5279953 ----------AGTGGAAAGGAGGCATCAGATACTGTGGGGAGCTGGTCTTTGCCAGCGCTCAAGAAGTCCCACTTCCATGATGCTTGGCCCTCTGCCTCC-----------------------TTCAGAACCTAGCTTGCCT i dasNov3.JH568349 C 0 C 0 a score=54808.000000 s hg38.chr4_KI270787v1_alt 99165 4 + 111943 AGAA s panTro5.chr4 119666409 4 - 194502333 AGCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121080267 4 - 195804263 AGCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4509238 4 - 17550833 AGCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69381192 4 - 118206036 AGCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111592121 4 - 190429646 AGCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110761330 4 - 189454096 AGCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13327762 4 + 26754465 AGCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4229244 4 - 5137665 AGCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122938637 4 - 135778131 AGCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2051133 4 + 2427316 AGCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1346601 4 + 1448899 AGCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53052978 4 - 190850796 AGCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8219029 4 - 15139346 AGCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7005523 4 - 7304997 AGCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9423374 4 - 11631747 AGCA i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48034202 4 + 63241923 AGCA i canFam3.chr13 C 0 I 4 s dasNov3.JH568349 4130530 4 - 5279953 AGCA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76453015 369 + 151834684 I a score=1660114.000000 s hg38.chr4_KI270787v1_alt 99169 148 + 111943 -----AAACAGGATAAGCCAAGGACCAGAAAAATA--AAATCTGATGGTGTTCAGGAGTCCTT-CATTGGAAGACATTAGAGGTGAGA--TTTAAACATGCCTTTTTTTCCTCTTCCAAAGTATTAGGTTTTGAAATATATTAACATTGCATCTGC---CT s panTro5.chr4 119666413 151 - 194502333 -----AAACAGGATAAGCCGAGGACCAGAAAAATA--AAATCTGATGGTGTTCAGGAGTCCTT-CATTGGAAGACATTAGAGGTGAGA--TTTAAACATGCCTTTTTTTCCTCTTCCAAAGTATTAGGTTTTGAAATGTATTAACTTTGCATCTGCCTGCT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121080271 151 - 195804263 -----AAACAGGATAAGCCGAGGACCAGAAAAATA--AAATCTGATGGTGTTCAGGAGTCCTT-CATTGGAAGACATTAGAGGTGAGA--TTTAAACATGCCTTTTTTTCCTCTTCCAAAGTATTAGGTTTTGAAATGTATTAACGTTGCATCTGCCTGCT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4509242 150 - 17550833 -----AAACAGGATAAGCCAAGGACCAGAAAAATA--AAATCTGATGGTGTTCAGGAGTCCTT-CATTGGAAGACATT-GAGGTGAGA--TTTAAACATGCCTTTTTTTCCTCTTCCAAAGTATTAGGTTTTAAAATGTATTAACATTGCATCTGCCTGCT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69381196 150 - 118206036 -----AAACAGGATAAGCCCAGGACCAGGAAAATA--AAATCTGATGGTGTTCAGGAGTCCTT-CATTGGAAGAC-TTAGAACTGAGA--TTTAAACATGCCTTTTTTTCCTCTTCCAAAGTATTAGGTTTTGAAATGTATTAACATTGCATCTGCCTGCT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111592125 147 - 190429646 -----AAACAGGATAAACCAAGGACCAGAAAAATA--AAATCTGATGGTGGTCAGGAGTGCTT-CATTGGAAGACATTAGAGGTGAGA--TTTAAACATGCC-TTTTTTCCTCTTCCAAAGTATTCGGTTTTGAAATGTATTACCATTGCATCTGCCT--- i rheMac8.chr5 C 0 I 3 s macFas5.chr5 110761334 147 - 189454096 -----AAACAGGATAAACCAAGGACCAGAAAAATA--AAATCTGATGGTGGTCAGGAGTGCTT-CATTGGAAGACATTAGAGGTGAGA--TTTAAACATGCC-TTTTTTCCTCTTCCAAAGTATTCGGTTTTGAAATGTATTACCATTGCATCTGCCT--- i macFas5.chr5 C 0 I 3 s macNem1.NW_012012466v1 13327766 147 + 26754465 -----AAACAGGATAAACCAAGGACCAGAAAAATA--AAATCTGATGGTGGTCAGGAGTGCTT-CACTGGAAGACATTAGAGGTGAGA--TTTAAACATGCC-TTTTTTCCTCTTCCAAAGTATTCGGTTTTGAAATGTATTACCATTGCATCTGCCT--- i macNem1.NW_012012466v1 C 0 I 2737 s cerAty1.NW_012001307v1 4229248 147 - 5137665 -----AAACAGGATAAACCAAGGACCAGAAAAATA--AAATCTGATGGTGGTCAGGAGTGCTT-CATTGGAAGACATTAGAGGTGAGA--TTTAAACATGCC-TTTTTTCCTCTTCCAAAGTATTCGGTTTTGAAATATATTACCATTGCATCTGCCT--- i cerAty1.NW_012001307v1 C 0 I 3 s chlSab2.chr7 122938641 147 - 135778131 -----AAACAGGATAAACCAAGGACCAGAAAAATA--AAATCTGATGGTGGTCAGGAGTGCTT-CATTGGAAGACATTAGAGGTGAGA--TTTAAACATGCC-TTTTTTCCTTTTCCAAAGTATTAGGTTTTGAAATGTATTACCATTGCACCTGCCT--- i chlSab2.chr7 C 0 I 3 s manLeu1.NW_012104388v1 2051137 147 + 2427316 -----AAACAGGATAAACCAAGGACCAGAAAAATA--AAATCTGCTGGTGGTCAGGAGTGCTT-CATTGGAAGACATTAGAGGTGAGA--TTTAAACATGCC-TTTTTTCCTCTTCCAAAGTATTCGGTTTTGAAATGTATTACCATTGCATCTGCCT--- i manLeu1.NW_012104388v1 C 0 I 3 s colAng1.NW_012119221v1 1346605 147 + 1448899 -----AAACAGGATAAACCAAGGACCAGAAAAATA--AAATCTGATGGTGGTCAGGAGTCCTT-CATTGGAAGACATTACAGATGAGA--TTTAAACATGCC-TTTTTTCCTCTTCCAAAGTATTAGGTTTTGAAATGTATTACCATTGCATCTGCCT--- i colAng1.NW_012119221v1 C 0 I 3 s calJac3.chr3 53052982 151 - 190850796 -----AAACAGGAAGAACCAAGGACCAGAAAACTA--AAATCAGATGGTGTTCAGGAGTCCTTACACTGGAAGACATTAGAGGTGAGA--TTTAAACATGCC-CTTTTTCCTCTTCCAAAGTATTAGGTTTTGAAGTATATAAACATTGCATCTGCCTGCT i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8219033 146 - 15139346 -----AAACAGAATAAACCAAGGACCAGAAACCTA--AAATCTGATGGTGCTCAAGAGTCCTTACACTGGAAGACATTAGAGGTGAGA--TTTAAAGATGCC-CTTTTTCTTCTTCCAAAGTATTAGGTTTTGAAAT-----AACATTGCATCTGCCTGCT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7005527 151 - 7304997 -----AAGCAGGATAAACCAAGGACCAGAAAACTA--AAATCTGATGGTGTTCAGGAGTCCTTACATTGGAAGACATTAGAGGTGAGA--TTTAAACATGCC-CTTTTTCCTCTTCCAAAGTATTAGGTTTTGAAGTGTATTAACATTGCATCTGCCTGCT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9423378 151 - 11631747 -----AAACAGGATAAACCAAGGACCAGAAAACTA--AAATCTGATGGTGTTCAGGAGTCCTTACATTGGAAGACATTAGAGGTGAGA--TTTAAACATGCC-CTTTTTCCTCTTCCAAAGTATTAAGTTTTGAAGTGTATTAACATTGCATCTGCCTGCT i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76453384 147 + 151834684 -----AAACAGGATAAACCAAATGCCAGGAAA-TG--AAATCTACTGG-GGCCAGGGGTCATT-TCATGGAGGGC--TAGGGATGAGAAGTTCAAATATGTC-TTCTCTTTTC-TATAAAGCACTACGTTCTGATAGGCATTAATATTGCATCCGACTGCT i mm10.chr5 I 369 C 0 s canFam3.chr13 48034210 154 + 63241923 -----AATCAGAATAAATCACAGGTCAGAAAAAAAGTAAACCTGATAATGCCTGGGAGTCTTT-CATTGAAAGATATTAACAGTGAGAAATTCAAACATGTC-TTTTTCCCTCTTCCCAAAGATTAAGTTTTAATATAGGTTAATGTTGCTTCTGCCTGCT i canFam3.chr13 I 4 C 0 s dasNov3.JH568349 4130534 128 - 5279953 AAAGAAGTCAGGCTAAATCAAGGACCAGAAAAATA--A--------------------------AACTGGA-----TTAGCAGTAAGAAAGTCAAGCATGCCTTTTTTTCCTCCCCCAAAATATTAAGTTTTCATATACATTGATATTGCAGCTGCTGGCC i dasNov3.JH568349 C 0 C 0 a score=187173.000000 s hg38.chr4_KI270787v1_alt 99317 16 + 111943 ATTTTTAAGAAGGAAC s panTro5.chr4 119666564 16 - 194502333 ATTTTTAAGAAGGAAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121080422 16 - 195804263 ATTTTTAAGAAGGAAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4509392 16 - 17550833 ATTTTTAAGAAGGAAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69381346 16 - 118206036 ATTTTTAAGAAGGAAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111592275 16 - 190429646 ATTTTTAAGAAagaac i rheMac8.chr5 I 3 C 0 s macFas5.chr5 110761484 16 - 189454096 ATTTTTAAGAAagaac i macFas5.chr5 I 3 C 0 s cerAty1.NW_012001307v1 4229398 16 - 5137665 ATTTTTAAGAAagaac i cerAty1.NW_012001307v1 I 3 C 0 s chlSab2.chr7 122938791 16 - 135778131 ATTTTTAAGAAAGAAT i chlSab2.chr7 I 3 C 0 s manLeu1.NW_012104388v1 2051287 16 + 2427316 ATTTTTAAGAAagaac i manLeu1.NW_012104388v1 I 3 C 0 s colAng1.NW_012119221v1 1346755 16 + 1448899 ATTTTTAAGAAAGCAC i colAng1.NW_012119221v1 I 3 C 0 s calJac3.chr3 53053133 16 - 190850796 ATTTTTGAGAAGGAAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8219179 16 - 15139346 ATTTTTGAGAAGGAAC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7005678 16 - 7304997 ATTTTTGAGAAGTAAC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9423529 16 - 11631747 ATTTTTGAGAAGGAAC i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76453531 16 + 151834684 ATTTTTGAGAATGAAC i mm10.chr5 C 0 C 0 s canFam3.chr13 48034364 16 + 63241923 ATTTTTAAGAAAAAAC i canFam3.chr13 C 0 I 2482 s dasNov3.JH568349 4130662 16 - 5279953 ATCTTTGTAAAGGAAC i dasNov3.JH568349 C 0 C 0 e macNem1.NW_012012466v1 13327913 2737 + 26754465 I a score=31932.000000 s hg38.chr4_KI270787v1_alt 99333 3 + 111943 AGT s panTro5.chr4 119666580 3 - 194502333 AGT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121080438 3 - 195804263 AGT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4509408 3 - 17550833 AGT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69381362 3 - 118206036 AGT i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111592291 3 - 190429646 agt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110761500 3 - 189454096 agt i macFas5.chr5 C 0 C 0 s cerAty1.NW_012001307v1 4229414 3 - 5137665 agt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122938807 3 - 135778131 Agt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2051303 3 + 2427316 agt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1346771 3 + 1448899 Agt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53053149 3 - 190850796 Agt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8219195 3 - 15139346 AGT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7005694 3 - 7304997 Agt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9423545 3 - 11631747 Agt i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76453547 3 + 151834684 TGT i mm10.chr5 C 0 I 3846 s dasNov3.JH568349 4130678 3 - 5279953 TGT i dasNov3.JH568349 C 0 I 4228 e canFam3.chr13 48034380 2482 + 63241923 I e macNem1.NW_012012466v1 13327913 2737 + 26754465 I a score=4097196.000000 s hg38.chr4_KI270787v1_alt 99336 465 + 111943 -------------cttaaaggagttatttaagcagaaacaaagga-tgacaattactttcatgaatacatatgaaagtataacactcactggtagaggttaatacatagtcaaatccagaatactgtaatggtggtatgtaaatcatacacatctctagtatgaaggttaaaagtaaatatgattaaataataactaaagtagccaggcatggtggctcacacctataatcctagcactttggtaggctaaggcaggcaaattgcctgagctcagaagtttgagaccagcctggccaacatggtgaaaccccgtctctgctaaaaactacaaaaattagctgggcatggtggcagatgcctgtagtcctggctacttgggagactgaggcacaagaatcacttgaacatgagaggcagaggttgcagtcagctgagatcatgccactgcactccagcctgggtgacagagcgagactc-t s panTro5.chr4 119666583 465 - 194502333 -------------cttaaaggagttatttaagcagaaacgaagga-tgacaattactttcatgaatacatatgaaagtataacactcactggtagaggttaatacatagtcaaatccagaatactgtaatggtggtatgtaaatcatacacatctctagtatgaaggttaaaagtaaatatgattaaataataactaaagtagccaggcatggtggctcacacctataaccctagcactttggtaggctaaggcaggcagattgcctgagctcagaagtttgagaccagcctggccaacatggtgaaaccccgtctctgctaaaaactacaaaaattagctgggcatggtggcagatgcctgtagtcctggctacttgggagactgaggcacaagaatcacttgaacatgagaggcagaggttgcagtgagctgagatcatgccactgcactccagcctgggtgacagagcgagactc-t i panTro5.chr4 C 0 C 0 s panPan2.chr4 121080441 465 - 195804263 -------------cttaaaggagttatttaagcagaaacgaagga-tgacaattactttcatgaatacatatgaaagtataactctcactggtagaggttaatacatagtcaaatccagaatactgtaatggtggtatgtaaatcacacacatctctagtatgaaggttaaaagtaaatatgattaaataataactaaagtagccaggcatggtggctcacacctataatcctagcactttggtaggctaaggcaggcagattgcctgagctcagaagtttgagaccagcctggccaacatggtgaaaccccgtctctgctaaaaactacaaaaattagctgggcatggtggcagatgcctgtagtcctggctacttgggagactgaggcacaagaatcatttgaacatgagaggcagaggttgcagtgagctgagatcatgccactgcactccagcctgggtgacagagcgagactc-t i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4509411 464 - 17550833 -------------CTTAAA-GAGTTATTTAAGCAgaaacaaagga-tgacaattactttcatgaatatatatgaaagtataacactcactggtagaggttaatacatagtcaaatccagaatactgtaatggtggtatgtaaatcatacacatctctagtatgaaggttaaaagtaaatatgattaaataataactaaagtagccaggcatggtggctcacacctataatgctagcactttggtaggctaaggcaggcagattgcctgagctcagaagtttgagaccagcctggccaacatggtgaaaccccgtctctgctaaaaactacaaaaattagctgggcatggtggcagatgcctgtagtcctggctacttgggagactgaggcacaagaatcacttgaacatgagaggcagaggttgcagtcagctgagatcatgccactgcactccagcctgggtgacagagcgagactc-t i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69381365 465 - 118206036 -------------cttaaaggagttatttaagcagaaacaaagga-tgacaattactttcatgaatacatatgaaagtataacactcactggtagacgttaatacatagtcaaatccagaatactgtaatggtggtatgtaaatc-tacacatctctagtatgaaggttaaaagtaagtatgattaaataataactaaagcagccgggcatggtggctcacacctataatcctagcactttggtaggctaaggcaggcagattgcctgagctcagaagtttgagaccagcctggccaacatagtgaaaccctgtctctactaaaaactccaaaaattagctgggcatgatggcagatgcctgtagtcctggctacttgggagactgaggcacaagaatcacttcaacatgagaggcagaagttgcagtgtgctgagatcatgccactgcactctagcccgggtgacagagcgagactctt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111592294 478 - 190429646 cttacaagaaatgcttaaaggagttctttaagcagaaatgaagga-tgacaactactttcatgaatacatatgaaagtataatactcactggtagaggttaatacatagtcaaatccagaatactgtaatggtggtatgtaaatcatacacatctctagtatgaaggttaaaagtaaatatgattaaataataactaaagcaactgggcacggtggctcacacctataatcctagcactttggtaggccaaggcaggcagattgcctgagctcagaagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaaagacaaaaactagcagggcatggtggctgatgcctgtagtcctggctacttgggagactgaggcataggaatcacttgaacatgagaggcagaggttgcagtgagccaagatcacaccactgcactccagcctgggtgacagagcaagactc-t i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110761503 478 - 189454096 cttacaagaaatgcttaaaggagttctttaagcagaaatgaagga-tgacaactactttcatgaatacatatgaaagtataatactcactggtagaggttaatacatagtcaaatccagaatactgtaatggtggtatgtaaatcatacacatctctagtatgaaggttaaaagtaaatatgattaaataataactaaagcaactgggcacggtggctcacacctataatcctagcactttggtaggccaaggcaggcagattgcctgagctcagaagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaaagacaaaaactagcagggcatggtggctgatgcctgtagtcctggctacttgggagactgaggcataggaatcacttgaacatgagaggcagaggttgcagtgagccaagatcacaccactgcactccagcctgggtgacagagcaagactc-t i macFas5.chr5 C 0 C 0 s cerAty1.NW_012001307v1 4229417 478 - 5137665 ctcacaagaaatgcttaaaggagttctttaagcagaaatgaagga-tgacaactactttcatgaatacatatgaaagtataacactcactggtagaggttaatacatagtcaaatccagaatactgtaatggtggtatgtaaatcatacacatctctagtatgaaggttaaaagtaaatatgattagataataactaaagcaactgggcacagtggctcacacctataatcctagcactttggtaggccaaggcaggcagattgcctgagctcagaagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaaagacaaaaactagcagggcatggtggctgatgcctgtagtcctggctacttgggagactgaggcataggaatcacttgaacatgagaggcagaggttgcagtgagccaagatcacaccactgcactccagcctgggtgacagagcaagactc-t i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122938810 478 - 135778131 cttacaagaaatgcttgaaggagttctttaagcagaaatgaagga-tgacaattactatcatgaatacatatgaaagtataacactcacttgtagaggttaatacatagtcaaatccagaatactgtaatggtggtatgtaaatcatacacatctctagtatgaaggttaaaagtaaatatgattaaataataactaaagcaactgggcacggtggctcacacctataatcctagcactttggtaagccaaggcaggcagattgcctgagctcagaagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaaagacaaaaactagctgggcatggtggctgatgcctgtagtcctggctacttgggagactgaggcataggaatcacttgaacatgagaggcagaggttgcagtgagccgagatcacaccactgcactccagcctgggtgacagagcaagactc-t i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2051306 478 + 2427316 cttacaagaaatgcttaaaggagttcttttagcagaaatgaagga-tgacaactactttcatgaatacatatgaaagtataacactcactggtagaggttaatacatagtcaaatccagaatactgtaatcgtggtatgtaaatcatatacatctctagtatgaaggttaaaagtaaatatgattaaataataactaaagcaactgggcacggtggctcacacctataatcctagcactttggtaggccaaggcaggcagattgcctgagctcagaagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaaagacaaaaactagcagggcatggtggctgatgcctgtagtcctggctacttgggagactgaggcataggaatcacttgaacatgagaggcagaggttgcagtgagccaagatcacaccactgcactccagcctgggtgacagagcaagactc-t i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1346774 478 + 1448899 cttacaagaaatgcttaaaggggttatttaagcagaaatgaagga-tgacaattactttcatgaatacatatgaaagtataacactcactggtagaggttgatacatagtcaaatccagaatactgtaatggtagtatgtaaatcatacacatctctcgtatgaaggttaaaagtaaatatgattaaataataactaaagcagccaggcacggtggctcatacctataatcctagcactttggtgggccaaggcaggcagattgcctaagctcagaagtttgagaccagcccggccaacatggtaaaaccccatctctactaaaaaagacaaaaattagctgggcatggtggccgatgcctgtagtcttggctacttgggagactgaggcataggaatcacttgaacatgagaggcagagattgcagtgagccgagatcacaccactgcactccagcctgggtgacagagcaagactc-t i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53053152 475 - 190850796 cttacaagacatgcttaaaggagttttttaagcagaaatgaaggattgacaattactttcatgaatacatatgaaagtataacactcactggtag-ggttaatacatagtcaaatccagaataatgtaatggtggtatgtaaatcatacacatccttagtatgaaggttaaaagtaaaaatgattaaacaataactaaagcagctggacacggtggctcaaacctataatcctaggactttggtagaccaaggcaggcagattgtttgagctcaggaatttgagaccagcctggccaacatggtgaaaccccatctctactaaaaa-tacaaaaactagctgggcatagtggctcatgcctgtagttctggctacttgggagactgaggcacaagaattgcttggacatgggaggcagagattacagtgagccaagatcatgccactatactccagtctggatgacagagcaaga--c-t i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8219198 477 - 15139346 ATtacaagaaatgcttatagaagttctttaagcagaaatgaaggattgacaattactttcatgaatacatatgaaagtataacactcactggtag-ggtaaatacatagtcaaatccagaataatgtaatggtggtatgtaaatcatagacatccctagtatgaaggttaaaagtaaaaatgattaaacaataactaaagcagctggacacggtggctcacacctataatcctaggactttggtaggccagggcaggcagattgcttgagctcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaa-tacaaaaattagccaggcagagtggctcatgcctgtagtcctggctacttgggagactgaggcacaagaatcgcttgaacatgggaggtagagattacagtgagctgagatcatgccactatattccagtctgggtgacagaacaagactc-t i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7005697 477 - 7304997 cttacaagaaatgcttaacggagttctttaagcagaaatgaaggattgacaattactttcatgaatacacatgaaagtataacactcactggtag-ggctaatatatagtcaaatccagaataatgtaatggtggtatataaatcatacacatccctagtaggaaggttaaaagtaaaaatgattaaacaataactaaagcagctggacatggtggcacacacctacaatcctaggactttggtaggccaaggcaggcagattgcttgagctcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaa-tacaaaaattagccgggcatagtggctcatgcctgtagtcctggctacttgggaaactgaggcacaagaatcgcttgaacatgggaggcagagattaccatgagctgagatcatggcactatattccagtctgggtgacagaacaagactc-t i cebCap1.NW_016107439v1 C 0 I 6243 s aotNan1.NW_018493494v1 9423548 477 - 11631747 cttacaagaaatgcttaaaggagttctttaagcagaaatgaaggattgacaattactttcatgaatacatatgaaagtataacacttgctggtag-ggttaatacatagtcaaatccagaataatgtaatggtggtacgtaaatcatatacatccctagtatgaaggttaaaagtaaaaatgattaaacaataactaaagcagttggacatggtggctcacatctataatcctaggactttggcaggccaagccaggcagattgcttgagctcaggagtttgagaccagcctggccaacatggtgaaaccccatctctacaaaaaa-tacaaaaattagccgggcatagtggctcatgcctgtagtcctggctacttgggagactgaggcacaagaatctcttgaacatgggaggcagagattacagtgagccgagatcatgccactatactccagtctgggtgacagaacaagactc-t i aotNan1.NW_018493494v1 C 0 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e canFam3.chr13 48034380 2482 + 63241923 I e macNem1.NW_012012466v1 13327913 2737 + 26754465 I a score=66883.000000 s hg38.chr4_KI270787v1_alt 99801 20 + 111943 gtctcc-----aaaaaaaataaaaa s panTro5.chr4 119667048 19 - 194502333 gtctcc------aaaaaaataaaaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121080906 19 - 195804263 gtctcc------aaaaaaataaaaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4509875 21 - 17550833 gtctcc----aaaaaaaaaaaaaaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69381830 25 - 118206036 gtctcCAAaaaaataaaaataaaaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111592772 20 - 190429646 gtctcg-----aaaaaatataaaaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110761981 20 - 189454096 gtctcg-----aaaaaatataaaaa i macFas5.chr5 C 0 C 0 s cerAty1.NW_012001307v1 4229895 20 - 5137665 gtctGG-----Gaaaaaaaaaaaaa i cerAty1.NW_012001307v1 C 0 I 15 s chlSab2.chr7 122939288 20 - 135778131 gtctcg-----aaaaaatataaaaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2051784 20 + 2427316 gtctcg-----aaaaaatataaaaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1347252 17 + 1448899 gtctcg-----aaaaaatataa--- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53053627 15 - 190850796 gtttcc----------aaataagaa i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8219675 15 - 15139346 gtttcc----------aaatcaaaa i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9424025 15 - 11631747 gtttcc----------aaataaaaa i aotNan1.NW_018493494v1 C 0 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e cebCap1.NW_016107439v1 7006174 6243 - 7304997 I e canFam3.chr13 48034380 2482 + 63241923 I e macNem1.NW_012012466v1 13327913 2737 + 26754465 I a score=21020.000000 s hg38.chr4_KI270787v1_alt 99821 6 + 111943 ttaaaa s panTro5.chr4 119667067 6 - 194502333 ttaaaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121080925 6 - 195804263 ttaaaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4509896 6 - 17550833 ttaaaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69381855 6 - 118206036 taaaaa i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111592792 6 - 190429646 ataaaa i rheMac8.chr5 C 0 I 14 s macFas5.chr5 110762001 6 - 189454096 ataaaa i macFas5.chr5 C 0 C 0 s chlSab2.chr7 122939308 6 - 135778131 ataaaa i chlSab2.chr7 C 0 I 11 s manLeu1.NW_012104388v1 2051804 6 + 2427316 ataaaa i manLeu1.NW_012104388v1 C 0 I 13 s colAng1.NW_012119221v1 1347269 4 + 1448899 --aaaa i colAng1.NW_012119221v1 C 0 I 1 s calJac3.chr3 53053642 6 - 190850796 attaaa i calJac3.chr3 C 0 I 4 s saiBol1.JH378162 8219690 5 - 15139346 ataaa- i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9424040 6 - 11631747 ataaaa i aotNan1.NW_018493494v1 C 0 I 17 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e cebCap1.NW_016107439v1 7006174 6243 - 7304997 I e canFam3.chr13 48034380 2482 + 63241923 I e cerAty1.NW_012001307v1 4229915 15 - 5137665 I e macNem1.NW_012012466v1 13327913 2737 + 26754465 I a score=-7401.000000 s hg38.chr4_KI270787v1_alt 99827 30 + 111943 ttaaaactgg--ttgttaaaattaacaactga s panTro5.chr4 119667073 14 - 194502333 ttaaaactga----------------agct-- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121080931 14 - 195804263 ttaaaactga----------------agct-- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4509902 32 - 17550833 ttaaaactgaagttgttaaaattaacaactga i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69381861 14 - 118206036 taaaaactaa----------------agct-- i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110762007 11 - 189454096 ---aaaataa----------------agct-- i macFas5.chr5 C 0 C 0 s colAng1.NW_012119221v1 1347274 12 + 1448899 tttaaaat------------------agct-- i colAng1.NW_012119221v1 I 1 C 0 s calJac3.chr3 53053652 8 - 190850796 tgaaagct------------------------ i calJac3.chr3 I 4 C 0 s saiBol1.JH378162 8219695 6 - 15139346 --aaagct------------------------ i saiBol1.JH378162 C 0 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e aotNan1.NW_018493494v1 9424046 17 - 11631747 I e cebCap1.NW_016107439v1 7006174 6243 - 7304997 I e canFam3.chr13 48034380 2482 + 63241923 I e manLeu1.NW_012104388v1 2051810 13 + 2427316 I e chlSab2.chr7 122939314 11 - 135778131 I e cerAty1.NW_012001307v1 4229915 15 - 5137665 I e macNem1.NW_012012466v1 13327913 2737 + 26754465 I e rheMac8.chr5 111592798 14 - 190429646 I a score=726674.000000 s hg38.chr4_KI270787v1_alt 99857 102 + 111943 ataataagttgttaagaaatatacagtttaaaaagatgatataaattgtggcatcaaaaacacaaaattgcagggggaagggtaaaaaa--gtctagatttc-----tt s panTro5.chr4 119667087 99 - 194502333 ataataagttgttaagaaatatacagtttaaaaagataa---aaattgtggcatcaaaaacacaaaattgcaaggggaagggtaaaaaa--gtctagatttc-----tt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121080945 98 - 195804263 ataataagttgttaagaaatatacagtttaaaaagataa---aaattgtggcatcaaaaacacaaaattgcaaggggaagggtaaaaaa--gtctagatttc------t i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4509934 99 - 17550833 ataataagttgttaagaaatatacagtttacaaagatat---aagttgtggcatcaaaaacacaaaattgcagggggaagggtaaaaaa--gtctagatttc-----tt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69381875 104 - 118206036 ataataagttgttaagaaatacacagtttaaaaagatat---aaattgtgacatcaaaaacacaaaattgcaggggggagggtaaaaaa--gtctagattttttttttt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111592812 99 - 190429646 ataataagttgttaagaaatatacagtttaaaaagatat---aaattgtgacatcaaaaacacaaaattgcaggggggagggtaaaaaa--gtctagatttt-----tt i rheMac8.chr5 I 14 C 0 s macFas5.chr5 110762018 99 - 189454096 ataataagttgttaagaaatatacagtttaaaaagatat---aaattgtgacatcaaaaacacaaaattgcaggggggagggtaaaaaa--gtctagatttt-----tt i macFas5.chr5 C 0 C 0 s cerAty1.NW_012001307v1 4229930 99 - 5137665 ataataagttgttaagaaatatacagtttaaaaagacat---aaattgtgacatcaaaaacacaaaattgctggggggagggtaaaaaa--gtctagatttt-----tt i cerAty1.NW_012001307v1 I 15 C 0 s chlSab2.chr7 122939325 99 - 135778131 ataataagttgttaagaaatatacagtttaaaaagatat---aaattgtgacatcaaaaacacaaaattgcagggggaagggtaaaaaa--gtctagatttt-----tt i chlSab2.chr7 I 11 C 0 s manLeu1.NW_012104388v1 2051823 99 + 2427316 ataataagttgttaagaaatatacagtttaaaaagatat---aaattgtgacatcaaaaacacaaaattgcaggggggagggtaaaaaa--gtctagatttt-----tt i manLeu1.NW_012104388v1 I 13 C 0 s colAng1.NW_012119221v1 1347286 98 + 1448899 ataataagttgttaagaaatatacagtttaaaaagatat----aattgtgacatcaaaaacacaaaattgcaggggggagggtaaaaaa--atctagatttt-----tt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53053660 100 - 190850796 atagtaagttgttaagaaatatactgtttaaaaagatat---aaactatgatatcagaaacacaaaattgcaggggggggagtaaaaaaa-gtctagttttt-----tt i calJac3.chr3 C 0 I 5346 s saiBol1.JH378162 8219701 100 - 15139346 ataataagttgttaataaatatacagtttaaaaagatat---aaactatgacatcaaaaacacaagattgcagaggggagagtaaaaaaa-gtctagatttt-----tt i saiBol1.JH378162 C 0 C 0 s aotNan1.NW_018493494v1 9424063 101 - 11631747 ataataacttgttaagaaatatacagtttaaaaagatat---aaactatgacatcaaaaacacaaaattgcaggggggagagtaaaaaaatgtctagatttt-----tt i aotNan1.NW_018493494v1 I 17 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e cebCap1.NW_016107439v1 7006174 6243 - 7304997 I e canFam3.chr13 48034380 2482 + 63241923 I e macNem1.NW_012012466v1 13327913 2737 + 26754465 I a score=7098.000000 s hg38.chr4_KI270787v1_alt 99959 1 + 111943 t s panTro5.chr4 119667186 1 - 194502333 t i panTro5.chr4 C 0 C 0 s panPan2.chr4 121081043 1 - 195804263 t i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4510033 1 - 17550833 t i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69381979 1 - 118206036 t i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111592911 1 - 190429646 t i rheMac8.chr5 C 0 I 1447 s macFas5.chr5 110762117 1 - 189454096 t i macFas5.chr5 C 0 I 1433 s cerAty1.NW_012001307v1 4230029 1 - 5137665 t i cerAty1.NW_012001307v1 C 0 I 1453 s chlSab2.chr7 122939424 1 - 135778131 t i chlSab2.chr7 C 0 I 4467 s manLeu1.NW_012104388v1 2051922 1 + 2427316 t i manLeu1.NW_012104388v1 C 0 I 4764 s colAng1.NW_012119221v1 1347384 1 + 1448899 t i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8219801 1 - 15139346 t i saiBol1.JH378162 C 0 I 6681 s aotNan1.NW_018493494v1 9424164 1 - 11631747 t i aotNan1.NW_018493494v1 C 0 I 5041 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e cebCap1.NW_016107439v1 7006174 6243 - 7304997 I e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48034380 2482 + 63241923 I e macNem1.NW_012012466v1 13327913 2737 + 26754465 I a score=1365.000000 s hg38.chr4_KI270787v1_alt 99960 1 + 111943 t s panTro5.chr4 119667187 1 - 194502333 t i panTro5.chr4 C 0 C 0 s panPan2.chr4 121081044 1 - 195804263 t i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4510034 1 - 17550833 t i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69381980 1 - 118206036 t i nomLeu3.chr9 C 0 C 0 s colAng1.NW_012119221v1 1347385 1 + 1448899 t i colAng1.NW_012119221v1 C 0 I 434 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e aotNan1.NW_018493494v1 9424165 5041 - 11631747 I e cebCap1.NW_016107439v1 7006174 6243 - 7304997 I e saiBol1.JH378162 8219802 6681 - 15139346 I e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48034380 2482 + 63241923 I e manLeu1.NW_012104388v1 2051923 4764 + 2427316 I e chlSab2.chr7 122939425 4467 - 135778131 I e cerAty1.NW_012001307v1 4230030 1453 - 5137665 I e macNem1.NW_012012466v1 13327913 2737 + 26754465 I e rheMac8.chr5 111592912 1447 - 190429646 I e macFas5.chr5 110762118 1433 - 189454096 I a score=445245.000000 s hg38.chr4_KI270787v1_alt 99961 514 + 111943 tttttagacggagtctcgctctgtcgcccaggctggagtgcggtggtgcaatcttggctcactgcaagctccgcctcccgggttcatgcaattctcctgcctcagcctcccgagtagctgggattacaggcgcccgccatcacgcccggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatgatctcgatctcctgaccttgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccacagcgcccggccaaaaagtctaga-ttttttgtatgtgacagaagttaagttgttatcagcttaaaatagtagactataactttaaaaggttttatggaagcctcatggaaaccacaaaacaaaaatctacggtacatattcaaatgctaaagataaaggagccaaagtttagcattaaagaaaaatcatcaaatcacaaagatggacaacaagaaaggaagaaagaaacaaaggagctact s panTro5.chr4 119667188 512 - 194502333 tttttagacggagtctcgctctgtcgcccaggctggagtgcggtggtgcaatcttggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcaacctcccgagtagctgggattacaggcgcccgccatcacgcctggctaattttttgtatttttagtagagacggggtttcaccgtgttagccagaatgatctcgatctcctgaccttgcgatccg-ccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgccctgccaaaaagtctaga-ttttttgtatgtgacagaagttaagttgttatcagcttaaaatagtagactataactttaaaaggttttatggaagcttcatggaaaccacaaaacaaaaatctacggtacatattcaaatgataaagatgaaggagccaaagtttagcattaaagaaaaatcatcaaatcacaaagatggacaacaagaaaggaagaaagaaacaaaggagctac- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121081045 512 - 195804263 tttttagacggagtctcgctctgtcgcccaggctggagtgcggtggtgcaatcttggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcaacctcccgagtagctgggattacaggcgcccgccatcacgcctggctaattttttgtatttttagtagagacggggtttcaccgtgttagccagaatgatctcgatctcctgaccttgcgatccg-ccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgccctgccaaaaagtctaga-ttttttgtatgtgacagaagttaagttgttatcagcttaaaatagtagactataactttaaaaggttttatggaagcttcatggaaaccacaaaacaaaaatctacggtacatattcaaatgataaagataaaggagccaaagtttagcattaaagaaaaatcatcaaatcacaaagatggacaacaagaaaggaagaaagaaacaaaggagctac- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4510035 514 - 17550833 tttttagacggagtctcgctctgtcgcccaggctggagtgcggtggtgcaatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctcccgagtagctgggattacaggcgcccgccatcacgcccggctaattttttgtatttttagtagagacggcgtttcaccgtgttagccgggatgatctcgatctcctgaccttgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccaaaaagtctaga-ttttttgtatgtgacagaagttaagttgttatcagcttaaaatagtagactataactttaaaaggttttatggaagcctcatggaaaccacaaaacaaaaatctacggtacatattcaaatgataaagataaaggagccaaagtttagccttaaagaaaaatcatcaaatcacaaagatggacaacaagaaaggaagaaagaaacaaaggagctaca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69381981 493 - 118206036 ttttttgacggagtctcgctctgttgcccaggctggagtgcagtggcgcaatcttggctcactgcaagctccgcctcccgggttcgtgccattctcttgcctcagccttccgagtagctgggactacaggcgcctgccaccgcgcccagctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcaatctcctgaccttgtgatccgccggcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccaaaaagtctagatttttttgtatgtgacagaagttaagttgttatcagcttaaaatagtagcctataactttaaaaggttttatggaagcctcatggaaaccacaaaacaaaaatctacagtacatattcaaatga----------------------tagcattaaagaaaaatcatcaaatcacaaatatggacaacaagaaaggaagaaagaaacaaaggagctaca i nomLeu3.chr9 C 0 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e aotNan1.NW_018493494v1 9424165 5041 - 11631747 I e cebCap1.NW_016107439v1 7006174 6243 - 7304997 I e saiBol1.JH378162 8219802 6681 - 15139346 I e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48034380 2482 + 63241923 I e colAng1.NW_012119221v1 1347386 434 + 1448899 I e manLeu1.NW_012104388v1 2051923 4764 + 2427316 I e chlSab2.chr7 122939425 4467 - 135778131 I e cerAty1.NW_012001307v1 4230030 1453 - 5137665 I e macNem1.NW_012012466v1 13327913 2737 + 26754465 I e rheMac8.chr5 111592912 1447 - 190429646 I e macFas5.chr5 110762118 1433 - 189454096 I a score=1195269.000000 s hg38.chr4_KI270787v1_alt 100475 923 + 111943 aaacaaccagaacataaataacaaaatagcagtagtaagtccttaccagtaaataatactcttgaatgtaaatagattaaattctctaatcaaaagatagagtgcctgacgagattt-------aaaaaaaaaaaaaagcaagaaccaactgtatgctccctgcaaaagacccacctaaactttaaggacatgcataggtgaaagtgaaaggatagaggatgatattctatgcaaatagtaacccaaagacagcagtggtagctatacttgtatctgataaaatagacttcaagtcaaacactgtcgcaagagacaatgaaggtcattatttaacgataaaggggtcaattcatcaagaggacacaaccattgtaaatatatatgtattcaacattggagcacctaaatacataaatcaaatattaatggacctgaagagagaaatagatagcaatacaataatagtcagagacttcaatactctactttcaacaattgatagatcaaccagacagcaaattaaaatggagatactggacttaaatgaacagttttgaccaaatggacctaatagacatacacataatattccatccaacagcagcaaaatacacattcttctgtagggcacatggaacattacacaggatagactataagttaggctacaaaac-aagtcttaacaaattattgcaatggtatctagtatcatttcagaccacaagggtatcaaactaaaagtcaataacaggaggaatcttagaaaagttacaaacacatggaaattaagcaacatactcctgaaaaacaaatgggtcaaagaaggaatcaaaaggaaaatgtaaaaataggttgagacgaatgacaatggaaacacaatataccaagacccatgggatgcatcaaagtcagttctaaaaggaaagttt s panTro5.chr4 119667700 924 - 194502333 aaaaaaccagaacataaataacaaaatagcagtagtaagtccttaccagtaaataatactcttgaatgtaaatagattaaattctctaatcaaaaaatagagtgcccgacgagattt----aaaaaaaaaaaaaaaaagcaagaaccaactgtatgctccctgcaaaagacccacctaaactttaaggacatgcataggtgaaagtgaaaggatagagggtgatattctatgcaaatagtaacccaaacacagcagtg--agctatacttatatctgacaaaatagacttcaagtcaaacactgttgcaagagacagtgaaggtcattatttaatgataaaggggtcaatgcatcaagaggacacaaccattgtaaatatatatgtattcaacattggagcacctaaatacataaatcaaatattaatggacctgaagagagaaatagatagcaatacaataatagtcagagacttcaatactctactttcaacaattgatagatcaaccagacagcaaattaaaatggagatactggacttgaatgaacagttttgaccaaatggacctaatagacatacacataatattccatccaacagcagcaaaatacacattcttctatagtgcacatggaacattacacaggatagactataagttaggctacaaaac-aagtcttaacaaattattgcaatcgtatctagtatcatttcagaccacaagggtatcaaactaaaagtcaataacaggaggaatcttagaaaagttacaaacacatggaaattaagcaacatactcctgaaaaacaaatgggtcaaagaaggaatcaaaaggaaaatgtaaaaataggttgagacaaatgacaatggaaacacaatataccaagacccatgggatgcatcaaagtcagttctaaaaggaaagttt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121081557 923 - 195804263 aaaaaaccagaacataaataacaaaatagcagtagtaagtccttaccagtaaataatactcttgaatgtaaatagattaaattctctaatcaaaaaatagagtgcccgacgagattt-------aaaaaaaaaaaaaagcaagaaccaactgtatgctccctgcaaaagacccacctaaactttaaggacatgcataggtgaaagtgaaaggatagagggtgatattctatgcaaatagtaacccaaagagagcagtggtagctatacttatatctgacaaaatagacttcaagtcaaacactgttgcaagagacagtgaaggtcattatttaatgataaaggggtcaattcatcaagaggacacaaccattgtaaatatatatgtattcaacattggagcacctaaatacataaatcaaatattaatggacctgaagagagaaatagatagcaatacaataatagtcagagacttcaatactctactttcaacaattgatagatcaaccagacagcaaattaaaatggagatactggacttgaatgaacagttttgaccaaatggacctaatagacatacacataatattccatccaacagcagcaaaatacacattcttctatagtgcacatggaacattacacaggatagactataagttaggctacaaaac-aagtcttaacaaattattgcaatcgtatctagtatcatttcagaccacaagggtatcaaactaaaagtcaataacaggaggaatcttagaaaagttacaaacacatggaaattaagcaacatactcctgaaaaacaaatgggtcaaagaaggaatcaaaaggaaaatgtaaaaataggttgagacaaatgacaatggaaacacaatataccaagacccatgggatgcatcaaagtcagttctaaaaggaaagttt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4510549 928 - 17550833 aaacaaccagaacataaataacaaaatagcagtagtaagtccttaccagtaaataatacgcttgaatgtaaatagattaaattctctaatcaaaagatagagtgcctgacgagatttaaaaaaaaaaaaaaaaaaaaagcaagaaccaactgtatgctccctgcaaaagacccacctaaac-ttaaggacatgcacaggtgaaagtgaaaggatagaggataatattctatgcaaatagtaacccaaagacagcagtggtagctatacttatatctgataaaatagacttcaagtcaaacactgtcgcaagagacaatgaaggtcattatttaatgataaaggggtcaattcatcaagaggacacaaccgttgtaaatacgtatgtattcaacattggagcacctaaatacataaatcaaatattaatggacctgaagagagaaatagatagcaatacaataatagtcagagacttcaatactctactttcaacaattgatagatcaaccagacagcaaattaaaatggaaatactggacttaaatgaacagttttgaccaaatggacctaatagacatacacacaatattccatccaacagcagcaaaatacacattcttctgtagggcacatggaacattacacaggatagactataagttaggctacaaaac-aagtcttaacaaattattgcaatggtatctagtatcatttcagatcacaagggtatcaaactaaaagtcaataacaggaggaatcttagaaaagttacaaacacatggaaattaagcaacatactcctgaaaaacaaatgggtc-aagaaggaatcaaaaggaaaatgtaaaaataggttgagatgaatgacaatggaaacacaatataccaagacccatgggatgcatcaaagtcagttctaaaaggaaagttt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69382474 924 - 118206036 aaacaaccagaacataaataacaaaatagcagtagtaagtccttaccagtaaataatactcttgaatgtaaatggattaaattctctaatcaaaagatagagtgtctgatgagattt-----aaaaaaaaaaaaaaaagcaagaaccaactgtatgctccctacaaaagacccacttaagctttaaggacatgcataggtgaaagtgaaatgatagaggatgatattccatgcaaatagcaacccaaagagagcagtggtagctatacttatatctgataaaatagacttcaagtcaaacactgttgcaagagacaatgaaggtcattatttaatgataaaggggtcaattcatcaagaggacacaaccattgtaaatatatatgtattcaacattggagcacctaaatacataaatcaaatattaatggaccggaagagagaaatagatagcaatacaacaatagtcagagacttcaatactctactttcaacaattgatagatcaaccagacagcaaattaaaatggaaatactggactcgaatgaacaattttgaccaagtggacctaatagacatacacagaatattccatccaacagcagcaaaatacacatttttctatagtgcacatggaatattacacaggatagactatgagttaggctacaaaacaaagtcttaacaaattattgaaatcgtatctagtatcatttcagaccacaagggtatcaaactaaaactcaataacaggaggaatcttagaaaagtt--aaacacatggaaattaagcaacatactcctgaaaaacaaatgggtcaaagaaggaatcgaaaggaaaatgtaaaaataggttgagacaaatgacaatggaaacacaatataccaagacccatgggatgcatcaaagtcagttctaaaaggaaaattt i nomLeu3.chr9 C 0 C 0 s colAng1.NW_012119221v1 1347820 915 + 1448899 aaacaacgagaacacacataacaaaatagcagtagtaagtccttacctgtaaataatgctcttgaatataaatggattaaattctccaatcaaaagacagagtgcatgactagatta-------aaaaaaaa--------aggaaccaactgtatgctccctacaaaagacccacttaagctctaaggacacacataggtgaaggtgaaaggacagaggaggatattccaggcaaatagtaacccaaagacagcagtggtagctatacttatatctgataaaatagacttcaagtcaaacactgttacaagagatgatgaaggtcattatttaatgataaaggagtcaattcatcaagaggacacaaccattgtaaatacatatgtattcgacattggagcacctaaatacataaatcaaatattaatggacctgaagagagaaatagatagcaatacaataacagttacagacttcaatactgtactttcaacaattgatagatcaaccagacagcaaattaaaatggaaatactggactcgaatgaacagttttgaccaaatggatctaatagacatacacagagtattccatccaacagcagcaaaatacacatttttctatagtgcacatggaacattacacaggatagactataagttaggctacaaaac-atgtctcaacaaattactgaaattgtatctaggatcatttcagaccacgaggatatcaaactaaaactgtataacaggaggaatcttagaaaagttacaaacacatggaaattaagcaacatactcctgaaaaacaaatgggtcaaagaaggaatcaaaaggaaaatgtaaaaatagcttgagacaaatgacaatggaaacacaatataccaagacccatgggatgcatcaaagccagttctaaaaggaaagttt i colAng1.NW_012119221v1 I 434 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e aotNan1.NW_018493494v1 9424165 5041 - 11631747 I e cebCap1.NW_016107439v1 7006174 6243 - 7304997 I e saiBol1.JH378162 8219802 6681 - 15139346 I e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48034380 2482 + 63241923 I e manLeu1.NW_012104388v1 2051923 4764 + 2427316 I e chlSab2.chr7 122939425 4467 - 135778131 I e cerAty1.NW_012001307v1 4230030 1453 - 5137665 I e macNem1.NW_012012466v1 13327913 2737 + 26754465 I e rheMac8.chr5 111592912 1447 - 190429646 I e macFas5.chr5 110762118 1433 - 189454096 I a score=26221.000000 s hg38.chr4_KI270787v1_alt 101398 21 + 111943 atactagtaaatgcctacatt s panTro5.chr4 119668624 21 - 194502333 atactagtaaatgcctacatt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121082480 21 - 195804263 atactagtaaatgcctacatt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4511477 21 - 17550833 atactagtaaatgcctacatt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69383398 21 - 118206036 atactagtaaatgcctacatt i nomLeu3.chr9 C 0 C 0 s macFas5.chr5 110763551 16 - 189454096 ataataataaaaaata----- i macFas5.chr5 I 1433 C 0 s colAng1.NW_012119221v1 1348735 21 + 1448899 atactagtaaatgccaacgtt i colAng1.NW_012119221v1 C 0 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e aotNan1.NW_018493494v1 9424165 5041 - 11631747 I e cebCap1.NW_016107439v1 7006174 6243 - 7304997 I e saiBol1.JH378162 8219802 6681 - 15139346 I e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48034380 2482 + 63241923 I e manLeu1.NW_012104388v1 2051923 4764 + 2427316 I e chlSab2.chr7 122939425 4467 - 135778131 I e cerAty1.NW_012001307v1 4230030 1453 - 5137665 I e macNem1.NW_012012466v1 13327913 2737 + 26754465 I e rheMac8.chr5 111592912 1447 - 190429646 I a score=2018677.000000 s hg38.chr4_KI270787v1_alt 101419 527 + 111943 aaaaaagaagaaatctctccaataaatagtttaatattatgcctcaaggaataagaagaagagaaataaactaaacataaagttagcatgaggaaagaaataataccaatcagaacagaaataaatcaaatacagaacagaaaaactgtagaaagaactgataaaactaagagttggtttcttgaaaaaataaaattggcaaaaccttggctagtctatctaaggaaaaaaaagagaatattcaaataaattaaatcaaaaattaaagtgaagaaataacaacagatacctccatggtaaaaatgattataaggaactattatgaacatttttatgccaacaaattagacaatctagaggaaatggaaaaaatcctagaaaaatataacctaccaaggttgaaatagaaagcctggacagaccaataacaaataattagattgacagagtaattttaaaacctccctcaaaagaaaagcccaggaccagatggcttcacagatgaattcttccaaaaattc--agagtt s panTro5.chr4 119668645 524 - 194502333 aaaaaagaagaaatctctccaataaatagtttaatattatgcctcaaggactaagaagaagagaaataaactaaacataaagttagcgtgaggaaagaaataataccaatcagaacagaaataaatcaaatagagaacagaaaaactgtagaaagaactgat-----taagagttggtttcttgaaaagataaaattggcaaaaccttggctagtctatctaaggaaaaaaaagagaatattcaaataaattaaatcaaaaattaaagtgaagaaataacaacagatacctctacggtaaaaatgattataaggaactattatgaacatttttatgccaacaaattaggcaatctagaggaaatggaaaaaatcctagaaaaatataacctaccaagattgaaatagaaagcctggacagaccaataacaaataattagattgatggagtaattttaaaacctcccccaaaagaaaagcccaggaccagatggcttcacagatgaattcttccaaaaattcaaagagtt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121082501 524 - 195804263 aaaaaagaagaaatctctccaataaatagtttaatattatgcctcaaggaccaagaagaagagaaataaactaaacacaaagttagcgtgaggaaagaaataataccaatcagaacagaaataaatcaaatagagaacagaaaaactgtagaaagaactgat-----taagagttggtttcttgaaaagataaaattggcaaaaccttggctagtctatctaaggaaaaaaaagagaatattcaaataaattaaatcaaaaattaaagtgaagaaataacaacagatacctctacggtaaaaatgattataaggaactattatgaacatttttatgccaacaaattaggcaatctagaggaaatggaaaaaatcctagaaaaatataacctaccaagattgaaatagaaagcctggacagaccaataacaaataattagattgatggagtaattttaaaacctcccccaaaagaaaagcccaggaccagatggcttcacagatgaattcttccaaaaattcaaagagtt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4511498 524 - 17550833 aaaaaagaagaaatctctccaataaatagtttaatattatgcctcaaggactaagaagaagagaaataaactaaacataaagttagcataaggaaacaaataataccaatcagaacagaaataaatcaaatagagaacagaaaaactgtagaaagaactgat-----taagagttggtttcttgaaaagataaaattggcaaaaccttggctagtctatctaaggaaaaaaaagagaatattcaaataaattaaatcaaaaattaaagtgaagaaataacaacagatacctctacggtaaaaatgattataaggaactattatgaacatttttatgccaacaaattaggcaatctagaggaaatggaaaaaaccctagaaaaatataacctaccaagattgaaatagaaagcctggacagaccaataacaaataattagattgatggagtaattttaaaacctcccccaaaagaaaagtccaggactagatggcttcacagatgaattcttccaaaaattcaaagagtt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69383419 524 - 118206036 aaaaaagaagaaatctctccaataaataatttaatattatgcctcaaagaataagaaaaggagaaataaactaaacataaagttagcatgaggaaagaaataataccaatcagaacagaaataaatcaaatagagaacagaaaaactgtagaaagaactgataaaactaagagttggtttcttgaaaaaataaaattggcaaaaccttggctagtct-----aaggaaaaaaagagaatattcaaataaattaaatcaaaaattaaagtgaagaaattacaacagacacctccatggtaaaaatgattataagggaatattatgaacatttttatgccaacaaattagacaatctagaggaaatggaaaaaatcttagaaaaatataacctaccaagattgaaatagaaagcctggacagaccaataacaaataattagattgatggagtaattttaaaacctcccccaaaagaaaagcccaggaccagatggcttcacagatgaattcttccaaaaattcaaagagtt i nomLeu3.chr9 C 0 I 307 s rheMac8.chr5 111594359 518 - 190429646 aaaaaagaagaaatctcttcaataaatagtttaatattatgtctcaaggaataagaaaaagagaaataaactaaacataaagttagcatgaggaaagaaataataccaatcagaacagaaataaaccaaatagagaacagaaaaactgtagaaagaactgacaaaactaagagttggtttcttgaaaaaataaaattggcaaaaccttggctagtctattgaagga----------aatattcaaataaatcaaatcaaaaattaaagtg-agaaataacaacagatacctccatgggaaaaatgattataagggactattatgaacatttttatgccaacaaattagacaatctagaggaaatggaaaaaatcctagaaaaatataacctgccaagattgaaatagaaagcccaaacagaccaataacaaataattagattgacggagtaattttaaaacctcccccaaaagaaaagcccagaaccagatggcttcacagacgaattcttccaaaaattcaaagagtt i rheMac8.chr5 I 1447 C 0 s macFas5.chr5 110763567 519 - 189454096 aaaaaagaagaaatctcttcaataaatagtttaatattatgtctcaaggaataagaaaaagagaaataaactaaacataaagttagcatgaggaaagaaataataccaatcagaacagaaataaaccaaatagagaacagaaaaactgtagaaagaactgataaaactaagagttggtttcttgaaaaaataaaattggcaaaaccttggctagtctatcgaagga----------aatattcaaataaatcaaatcaaaaattaaagtgaagaaataacaacagatacctccatgggaaaaatgattataagggactattatgaacatttttatgccaacaaattagacaatctagaggaaatggaaaaaatcctagaaaaatataacctgccaagattgaaatagaaagcccaaacagaccaataacaaataattagattgacggagtaattttaaaacctcccccaaaagaaaagcccagaaccagatggcttcacagacgaattcttccaaaaattcaaagagtt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13330650 518 + 26754465 aaaaaagaagaaatctcttcaataaatagtttaatattatgtctcaaggaataagaaaaagagaaataaactaaacataaagttagcatgaggaaagaaataataccaatcagaacagaaataaaccaaatagagaacagaaaaactgtagaaagaactgataaaactaagagttggtttcttgaaaaaataaaattggcaaaaccttggctagtctatcgaagga----------aatattcaaataaatcaaatcaaaaattaaagtg-agaaataacaacagatacctccatgggaaaaatgattataagggactattatgaacatttttatgccaacaaattagacaatctagaggaaatggaaaaaatcctagaaaaatataacctgccaagattgaaatagaaagcccaaacagaccaataacaaataattagattgacagagtaattttaaaacctcccccaaaagaaaagcccagaaccagatggcttcacagacgaattcttccaaaaattcaaagagtt i macNem1.NW_012012466v1 I 2737 C 0 s cerAty1.NW_012001307v1 4231483 519 - 5137665 aaaaaagaagaaatctcttcaataaatagtttaatattatgtctcaaggaataagaaaaagagaaataaactaaacataaagttagcatgaggaaagaaataataccaatcagaacagaaataaaccaaatagagaacagaaaaactgtagaaagaactgataaaactaagagttggtttcttgaaaaaataaaattggcaaaaccttggctagtctattgaagga----------aatattcaaataaatcaaatcaaaaattaaagtgaagaaataacaacagatacctccatgggaaaaatgattataagggactattatgaacatttttatgccaacaaattagacaatctagaggaaatggaaaaaatcctagaaaaatataacctaccaagattgaaatagaaagcccaaacagaccaataacaaataattagattgacggagtaattttaaaacctcccccaaaagaaaagcccagaaccagatggcttcacagatgaattcttccaaaaattcaaagagtt i cerAty1.NW_012001307v1 I 1453 C 0 s colAng1.NW_012119221v1 1348756 518 + 1448899 aaaaaagaggaaatctctccaataaatagtttaatattatgtctcaaggaataagaaaaagagaaataaactaaacacaaagttagcgtgaggaaagaaataataccaatcagaacacaaataaaccaaatagagaagagaaaaactgtagaaagaacagat-aaactaagagttggtttcttgaaaaaataaaattggcaaaaccttagctagtctatcgaagga----------aatattcaaataaattaaatcaaaaattaaaatgaagaaataacaacagatacctccatgggaaaaatgattataagggactattatgaacatttttatgccaacaaattagacaatctagaggaaatggaaaaaatcctggaaaaatataacctactaagattgaaatagaaagcctgaacagaccaataacaaataattagactgacggagtaattttaaaacctctcccaaaagaaaagcccaggaccagatggcttcacagatgaattcttccaaaaattcaaagagtt i colAng1.NW_012119221v1 C 0 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e aotNan1.NW_018493494v1 9424165 5041 - 11631747 I e cebCap1.NW_016107439v1 7006174 6243 - 7304997 I e saiBol1.JH378162 8219802 6681 - 15139346 I e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48034380 2482 + 63241923 I e manLeu1.NW_012104388v1 2051923 4764 + 2427316 I e chlSab2.chr7 122939425 4467 - 135778131 I a score=10293591.000000 s hg38.chr4_KI270787v1_alt 101946 2778 + 111943 aatatcaatacttcctaagctcttttgaagaacaatgctagaggaaatactttcaaatacattttatgagaccagcatcaccccaatacctaagccagacaaatacatcatcgtaagaaaagaaaactacaggccaatatctctgattaacaatgatgtaaaaatcctcaataaaatattagtaaaccaaaactaacaaacatcaaaaagattatacatcataatcaagtaggatttatccccgacatgcaagactggtttaacatatgcaaaccaataaatgtgatacatcacgttaacagaataaaagat---aacca-atgatcatctcaaatgactcagaa------------aaactccaacatcctttcttgataaaaactctcaaaagtttaggtataaaaggaaagtttctcaatgtaataatggccattttttaaaaacccacagctaacattaaaatcaatgagggagaactaaaagctttttcactaagatccagtacaaggcaaggatggccactcttgccacttctattcaacatagtgctggaagtactagcaagagcaattagac----aaagaaaa-agaaaaa--aaagtgaaatgaaaggtatccaaaccagaaaggaagaagtcaaattatctccatctgcagatgatatgattctatttgtttaagaagcccaccaaaaaattgttacaattaataaatgaattcagtaaagttgcaggacacaaaatcaacatgcaaaaatcagtaacatttttatacacaaataacaacataaatgaaaaagaaatcaagaaagttatccaatttatgatagcgttaaaaaattaaaacacttaggaataaatttaaccaataggtgaaagatctgtacactgaaaactataaaacactgatgaaagaaactgacgaaaacacaaataaatggaaagatatcttgtgctcatggactggaagaatta-ctattgtttaaatgtctgtattacccaaagcaatatacagatttaatgcagtgcctatcaaaa-tcccaatgacattcttcacggaaattttt--ttaa-aaatcctaaaatttttactgaaccataaaagaccccaaatagctgaaacaattttgagaaagaaaaacaaagtt--ggaggcatgacacttctgc-tttataattatatta-caaagttatagtaattaaaaccgtatgg--tactggcataaaaacagac-acatagaccagtggaatacaatagagagcccagaaaaaaatccaaacatatata-tggtcaactaaattttgacaagcacactaggaggacacaataataaaagattggt-cttgtc--aacgaatagtg--cttggaaatttgtatttccacatgcaaaataatgaaactggactctaatactatacacaaaaatcaactcaaaatggataaaagacctgtatataagatcagaaatcataagacttctagaagagaacatagaggaaagcctcctggacattggcctttgcaattattttttggatatcacaccaaaagctcgggccacaaaaacaaaaataaattaatgtgattacatcaaactaaaaagcttctgcacagcaaaggaaacaatccacaaaatgaaacaggagcttataaattaggaaaaagtatttgtaaaccgtatatctggtaggggttactatccaaaatttaaagaactcatacaactcaatagtgaaaaaacaaataacctgattttttaaatgggcaaaagttct-------catttctccaaagaagacataaatatggccaacaggtatatgaaaatgtgctcaacattattaatcatcagggaaatacaaatcaaaaccactatgagataccaactcacacatggctattatcaacaagtcaaaagacagcaaatgttggtgagggtgtggagaaaaggaaactcttgtacattgttggtggggatgtagactggtacagccattgtggaaaacagtgtggaagcacctaaagaaatttaaaatagaactac----tatatgacccagcaatccctcttctgagtctatacctaaagaaagtgaaatcaccaccctctaaagatatctgcaatctcatgttcattgtagcattattcacagtagccaagatatggaaacaatctaagtatccactgatgaatgaatagataaaggaactgtgatatgatatgatatgatatgatacgatatgatatgatat-----gacatgttcattgtagcattatccacaatagccaagatatggaaacaacttaaatgtcacttgacagacgaatggataaagaaactgtggtgtgtgagt--gtgtgcgtgtgtgtgtgtgtgtgtgtgtgtg--taatggaatattattcagct-ctaaa-aaataatgaaatcttgccatttgccacaacatggatgagcctggaggacattatgctaagtaaaataagccagacacagaaagaaaaatattgcatgatctcatttatatgtagaatcctaaaaatatcaaaaatacagagacatagaataaaacagtggttactaggggtatggggatccaggggaggaaatggggagatgtaggtcagaggacacaaagtaggaggtgtgtaggatgaactaatctagagctctaatgtacagcatgaaaactatagttaataaaattgtactatgtatgggtttcatgctaaacgagtaggttttagctgctcttgctactaaaacaaaaaagaataggtaactatgagagatgatgaatatgttaatttgcttcactatagtaac s panTro5.chr4 119669169 2765 - 194502333 aataccaatacttcttaagcttttttgaagaacaatgctagaggaaatactttcaaatacattttatgagaccagcatcaccccaatacctaagccagacaaatacatcatcgtaagaaaagaaaactacaggccaatttctctgattaacaatgatgtaaaaatcctcaataaaatattagtaaaccaaaactaacaaacatcaaaaagattatacgtcataatcaagtaggatttatccccgacatgcaagactggtttaacatatgcaaaccaataaatgtgatacatcacattaacagaataaaagat---aacca-atgatcatctcaaatgactcagaa------------aaactccaacatcctttcttgataaaaactctcaaaagtttagatataaaaggaaagtttctcaatgtaataatggccattttttaaaaactcacagctaacattaaaatcagtgagggagaactaaaagctttttcactaagatccagtacaaggcaaggatggccactcttgccacttctattcaacatagtgctggaagtactagcaagagcaattagac----aaagaaaa-agaaaaa--aaagtgaaatgaaaggcatccaaaccagaaaggaagaagtcaaattatctccatctgcagatgacatgattcta----tttaagaagcccaccaaaaaattgttacaactaataaatgaattcagtaaagttgcaggacacaaaatcaacatgcaaaaatcagtagcatttttatacacaaataacaacataaatgaaaaagaaatcaagaaagttatccaatttatgatagtgttaaaaaattaaaacacttaggaataaatttaaccaataggtgaaagagctgtacactgaaaactataaaacactgatgaaagaaagtgacgaaaacacaaataaatggaaagatatcttgtgcttatggactggaagaatta-ctattgtttaaatgtctgtattacccaaagcaatatacagatttaatgcagtccctatcaaaa-tcccaatgacattcttcacagaaa-tttt--taaa-aaatcctacaacttttactgaaccataaaagaccccaaatagctgaaacaattttgagaaagaaaaacaaagtt--ggaggcatgacacttctgc-tttataattatatta-caaagttctagtaattaaaacagtatgg--tactggcataaaaacagac-ccatagaccagtggaatacaatagagagcccagaaaaaaatccaaacatatata-tggtcaactaaattttgacaagcacacaaggaggacacagtaataaaagattggt-cttgtc--aacgaatagtg--cttggaaatttgtatttccacatgcaaaataatgaaactggactctaatactatacacaaaaatcaactcaaaatggataaaagacctg-atataagatcagaaaccataagacttctagaagagaacatagaggaaaggctcctggatattggcctttgcaattattttttggatatcacaccaaaagctcaggccacaaaagcaaaaataaattaatgggattacatcaaactaaaaagcttctgcacagcaaaggaaacaatccacaaaatgaaacaggagcttataaattaggaaaaagtatgtgtaaaccatatatctggtaggggttactatccaaaatttaaagaagtcatacaactcaatagtgaaaatacaaataacctaattttttaaatgggcaaaagttct-------catttctccaaagaagacataaatatggccaacaggtatatgaaaatgtgctcaacattattaatcatcagggaaatacaaatc-aaaccactatgagataccaactcacacatggctattatcaacaagtcaaaagatagcaaatgttggtgagggtgtggagaaaaggaaactcttgtacattgttggtggggatgtagactggtacagccattgtggaaaccagtatggaagcacctaaagaaatttaaaatagaactac----tatatgacccagcaatccctcttctgggtctatacctaaagaaagtgaaatcaccaccctctaaagatatccacaatcccatgttcgttgtagcattattcacagtagccaagatatggaaacaatctaagtatccactgatgaatgaatagataaaggaactgtgatatgatatgatatgagatgatatgatatgatatgatat-----gatatgttcattgtagcattatccacaatagccaagatatggaaacaacttaaatgtcccatgacagacgaatggataaagaaactgtggtgtgtgagt--------gtgtgtgtgcgtgtgtgtgtgtgtg--taatgaaatattattcagct-ctaaa-aaataatgaaatcttgccatttgccacaacatggatgagcctggaggacattatgctaagtaaaataagccagacacagaaagaaaaatattgcatgatctcatttaaatgtagaatcctaaaaatatcaaaaatacagagacatagaataaaacagtggtaactaggggtatggggatgcaggggaggaaatggggagacataggtcagaggacacaaagtaggaggtgtgtaggatgaacaaatctagagctctaatgtacagcatgaaaactatagttaataaaattgtactatgtatgggtttcatgctaaacgagtaggttttagctgctcttgctactaaaacaaaaaagaataggtaactatgagagatgatgaatatgttaatttgcttcactatagtaac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121083025 2752 - 195804263 aataccaatacttcttaagcttttttgaagaacaatgctagaggaaatactttcaaatacattttatgagaccagcatcaccccaatacctaagccagacaaatacatcatcgtaagaaaagaaaactacaggccaatttctctgattaacaatgatgtaaaaatcctcaataaaatattagtaaaccaaaactaacaaacatcaaaaagattatacgtcataatcaagtaggatttatccccgacatgcaagactggtttaacatatgcaaaccaataaatgtgatacatcacattaacagaataaaagat---aacca-atgatcatctcaaatgactcagaa------------aaactccaacatcctttcttgataaaaactctcaaaagtttagatataaaaggaaagtttctcaatgtaataatggccattttttaaaaactcacagctaacattaaaatcagtgagggagaactaaaagctttttcactaagatccagtacaaggcaaggatggccactcttgccacttctattcaacatagtgctggaagtactagcaagagcaattagac----aaagaaaa-agaaaaa--aaagtgaaatgaaaggcatccaaaccagaaaggaagaagtcaaattatctccatctgcagatgacatgattctatttgtttaagaagcccaccaaaaaattgttacaactaataaatgaattcagtaaagttgcaggacacaaaatcaacatgcaaaaatcagtagcatttttatacacaaataacaacataaatgaaaaagaaatcaagaaagttatccaatttatgatagtgttaaaaaattaaaacacttaggaataaatttaaccaataggtgaaagatctgtacactgaaaactataaaacactgatgaaagaaagtgacgaaaacacaaataaatggaaagatatcttgtgcttatggactggaagaatta-ctattgtttaaatgtctgtattacccaaagcaatatacagatttaatgcagtccctatcaaaa-tcccaatgacattcttcacagaaa-tttt--taaa-aaatcctacaacttttactgaaccataaaagaccccaaatagctgaaacaattttgagaaagaaaaacaaagtt--ggaggcatgacacttctgc-tttataattatatta-caaagttctagtaattaaaacagtatgg--tactgacataaaaacagac-ccatagaccagtagaatacaatagagagcccagaaaaaaatccaaacatatata-tggtcaactaaattttgacaagcacacaaggaggacacagtaataaaagattggt-cttgtc--aacgaatagtg--cttggaaatttgtatttccacatgcaaaataatgaaactggactctaatactatacacaaaaatcaactcaaaatggataaaagacctg-atataagatcagaaaccataagacttctagaagagaacatagaggaaaggctcctggacattggcctttgcaattattttttggatatcacaccaaaagctcaggccacaaaagcaaaaataaattaatgggattacatcaaactaaaaagcttctgcacagcaaaggaaacaatccacaaaatgaaacaggagcttataaattaggaaaaagtatgtgtaaaccatatatctggtaggggttactatccaaaatttaaagaagtcatacaactcaatagtgaaaatacaaataacctaattttttaaatgggcaaaagttct-------catttctccaaagaagacataaatatggccaacaggtatatgaaaatgtgctcaacattattaatcatcagggaaatacaaatc-aaaccactatgagataccaactcacacatggctattatcaacaagtcaaaagatagcaaatgttggtgagggtgtggagaaaaggaaactcttgtacattgttggtggggatgtagactggtacagccattgtggaaaccagtatggaagcacctaaagaaatttaaaatagaactac----tatatgacccagcaatccctcttctgggtctatacctaaagaaagtgaaatcaccaccctctaaagatatccacaatcccatgttcattgtagcattattcacagtagccaagatatggaaacaatctaagtatccactgatgaatgaatagataaaggaactgtgatat--------------------gatatgatatgatat-----gatatgttcattgtagcattatccacaatagccaagatatggaaacaacttaaatgtcccatgacagacgaatggataaagaaactgtggtgtgtgagt--gt----gtgcgtgcgtatgtgtgtgtgtgtg--taatgaaatattattcagctactaaa-aaataatgaaatcttgccatttgccacaacatggatgagcctggaggacattatgctaagcaaaataagccagacacagaaagaaaaatattgcatgatctcatttaaatgtagaatcctaaaaatatcaaaaatacagagacatagaataaaacagtggtaactaggggtatggggatccaggggaggaaatggggagacataggtcagaggacacaaagtaggaggtgtgtaggatgaacaaatctagagctctaatgtacagcatgaaaactatagttaataaaattgtactatgtatgggtttcatgctaaacgagtaggttttagctgctcttgctactaaaacaaaaaagaataggtaactatgagagatgatgaatatgttaatttgcttcactatagtaac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4512022 2764 - 17550833 aataccaatacttcttaagcttttttgaagaacaatgctagaggaaatactttcaaatacattttatgagaccagcatcaccccaatacctaagccaggcaaatacatcatcgtaagaaaagaaaactacaggccaatttctctgattaacaatgatgtaaaaatcctcaataaaatattagtaaaccaaaactaacaaacatcaaaaagattatacatcataatcaagtaggatttatccccgacatgcaagactggtttaacatatgcaaaccaataaatgtgacacatcacattaacagaataaaagat---aacca-atgatcatctcaaatgactcagaa------------aaactccaacatcctttcttgataaaaactctcaaaagtttagatataaaaggaaagtttctcaatgtaataattgccattttttaaaaactcacagctaacattaaaatcagtgagggagaactaaaagctttttcactaagatccagtacaaggcaaggatggccactcttgccacttctattcaacatagtgctggaagtactagcaagagcaattagac----aaagaaaa-agaaaaa--aaagtgaaatgaaaggcatccaaaccagaaaggaagaagtcaaattatctccatctgcagatgacatgattctatttgtttaagaagcccaccaaaaaactgttacaactaataaatgaattcagtaaagttgcaggacacaaaatcaacatgcaaaaatcagtagcatttttatacacaaataacaacataaatgaaaaagaaatcaagaaagttatccaatttatgatagtgttaaaaaattaaaacacttaggaataaatttaaccaataggtgaaagatctgtacactgaaaactataaaacactgatgaaagaaagtgatgaaaacacaaataaatggaaagatatcttgtgcttatggactggaataatta-ctattgtttaaatgtctgtattacccaaagcaatatacagatttaatgcagtccctatcaaaa-tcccaatgacattcttcacagaaa-tttt--ttaa-aaatcctaaaacttttactgaaccataaaagaccccaaatagctgaaacaattttgagaaagaaaaacaaagtt--ggaggcatgacacttctgc-tttataattatatta-caaagttatagtaattaaaacagtatgg--tactggcataaaaacagac-ccatagaccagtggaatacaatagagagcccagaaaaaaatccaaacatatata-tggtcaactaaattttgacaagcacactaggaggacacaataatacaagattggt-cttgtc--aacgaatagtg--cttggaaatttgtatttccacatgcaaaataatgaaactggactctaatactatacacaaaaatcaactcaaaatggataaaagacctgtatataagatcagaaaccataagacttctagaagagaacatagaggaaagcctcctggacattggtctttgcaattattttttggatatcacaccaaaagctcgggccacaaaagcaaaaataaattaatgggattacatcaaactaaaaagcttctgcacagcaaaggaaaccatccacaaaatgaaacaggagcttataaattaggaaaaagtatttgtaaaccatatatctggtaggggttactatccaaaatttaatgaactcatacaactcaatagtgaaaaaacaaataacctgattttttaaatgggcaaaagttct-------catttctccaaagaagacataaatatggccaacaggtatatgaaaatgtgctcaacattattaatcatcagggaaatacaaatcaaaaccactatgagataccaactcacacatggctattatcaacaagtcaaaagatagcaaatgttggtgagggtgtggagaaaacgaaactcttgtacattgttggtggggatgtagactggtacagccattgtggaaaacagtgtggaagcacctaaagaaatttaaaatagaactac----tatatgacccagcaatccctcttctgggtctatacctaaagaaagtgaaatcaccaccctctaaagatatccgcaatcccatgttcattgtagcattattcacagtagccaagatatggaaacaatctaagtatccactgatgaatgaatagataaaggaactgtgatat-----gatatgatatgatacgatatgatatgatat-----gacatgttcattgtagcattatccacaatagccaagatatggaaacaacttaaatgtcccttgacagacaaatggataaagaaactgtggtgtgtga----------gtgtgtgcatgtgtgtgtgtgtgtg--taatggaatattattcagct-ctaaa-aaataatgaaatcttgccatttgccacaacatggatgagcctggaggacattatgctaagtaaaataagccagacacagaaataaaaatattgcatgatctcatttatatgtagaatcctaaaaatatcaaaaatacagagacatagaataaaacagtggttactaggggtatggggatccaggggaggaaatggggagatgtaggtcagaggacacaaagtaggaggtgtgtaggatgaacaaatctagagctctaatgtacagcatgaaaactatagttaataaaattgtactatgtatgggtttcatgctaaacgagtaggttttagctgctcttgctactaaaacaaaaaagaataggtaactatgagagatgatgaatatgttaatttgcttcactatagtaac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69384250 2761 - 118206036 aataccaatacttcttaagctcttttgaagaacaatgctagaggaaatacttttaaatacattttatgagaccagcatcaccctgatacctaagccagacaaatacatcatcataagaaaagaaaactacagggcaattcctctgattaacaatgatgtaaaaatcctcaataaaa-attagtaaaccaaaactaacaaacatcaaaaagattatacatcataatcaagtaggatttatcctcgacatgcaagactggtttaacatatgcaaaccaataaatgtgatacatcacattaacagaataaaagat---aaccacatgatcatctcaaatgactcagaa------------aaactccaacatcctttcttgataaaaactctcaaaagtttagatataaaaggaaagtttctcaatgtaatgatggccattttttaaaaacccacagctaacattaaaatcaatgagggagaacaaaaagctttttcactaagatccagtacaaggcaaggatggccactcttgccacttctattcaacatagtgctggaagtactagcaagagcaatcagacaaaaaaaaaaaa-agaaaga--aaaatgaaatgaaaggcatccaaatcagaaaggaagaagtcaaattatctccatccacagaggacatgattctgtatgtttaagaagcccaccaaaaaattgttacaactaataaatgaattcagtaaagttgcaggacacaaaatcaacatgcgaaaatcagtaacattttcatacacaaataacaacataaatgaaaaagaaatcaagaaagttacccaatttatgatagcattaaaaaattaaaacacttaggaataaatttaaccaagaggtgaaagatctgtacactgaaaactataaaacattgatgaaagaaactgacgaaaacacaaataaatggaaagatatcttgtgctcatggactggaagaatta-ctattgtttaaatgtccatattacccaaagcaatatacagatttaaaggagtccctatcaaaa-tcccaatgacattcttcacagaaa-ttttaaaaaa-aaattctaaaatttttactgaaacataaaagaccccaaatagctgaaacaattttgagaaagaaaaacaaagtt--ggaggcatgacacttctgc-ttcataattatatta-caaagttatagtaatcaaaatagtatgg--tactggcataaaaacagac-acatagaccagtggaatacaatagagagcccagaaaaaaatccaaacatatata-cggtcaactaaattttgacgagcacactaggaggacacaataataaaagattagt-cttgtc--aacgaatagtg--cttggaaatttgtatttccacacacaaaataatgaaactggactctaatactatacacaaaaatcaactcaaaatggataaaagacctgtatataagatcagaaaccataagacttctagaagagaacgtagaggaaaggcccctggacattggcctttgcaattattttttggatatcacaccaaaatctcaggccacaaaagcaaaaataaattaatgggattatataaaactaaaaggcttctgcacagcaaaggaaacaatccacaaaatgaaacaggagcttatagattaggaaaaagtatttgtaaaccatacatctggtaggggttactatccaaaatttaaagaactcatacaactcaatagtgaaaaaacaaataacctgattttttaaatgggcaaaagttct-------catttctcca---aagacacaaatgtggccaacaagtatatgaaaatgtgctcaacattattaatcatcagggaaatacaaatcaaaaccactatgagataccaactcacacacggctattatcaacaaatgaaaagatagcaaatgttggtgagggtgtggagaaaagggaactcttgtacattgttggtggggatgtagactggtatagccattgtggaaaacagtatggaagcacctaaagaaatttaaaatagaactac----tgtatgacccagcaatccctcttctgggtccatacctaaagaaagtgaaatcaccaccctctaaagatatctgcagtcccatgttcattgtagcattattcacagtagccaagatatggaaacaatctaagtacccactgatgaatgaatagataaaggaactgtgatat--------------------gatatgatatgatat-----gatatgttcattgtagcattatccacaatagccaagatacagaaacaacttaaatgtcccttgacagacgaatggataaagaaactgtggtgtgcgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg--taatggaatattattcagct-ctaaa-aaataatgaaatcttgccatttgccacaacgtggatgagcctggaggacattactctaagtaaaataagccagacacagaaagaaaaatattgcgtgatctcacttacatgtagaatcctaaaaatatcaaaaatacagagacatagaataaaacagtggttaccaggggtatggaggtccaggggaggaaatggggagatgtaagtcagaggacacaaagtaggaagtgtgtaggatgaacaaatctagagctctaatgtacagcatgaagactgtagttaataaaattgtactatgtacaggtttcatgctaaacgagtaggttttagctgctcttgctactaaaacaaaaaa-aattggcaactctgagagatgatgaatatgttaatttgcttcactatagtaac i nomLeu3.chr9 I 307 C 0 s rheMac8.chr5 111594877 2728 - 190429646 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i rheMac8.chr5 C 0 I 11 s macFas5.chr5 110764086 2732 - 189454096 aataccaatacttcttaagttcttttgaagaacaatgatagaggaaatacttccaaatacattttatgagaccagcatcaccccgatgcctaagccagacaaatacatcatcataagaaaagaaaactacaggccaatttctctgattaacaatgatgtaaaaatcctcaataaaacattagtaaaccaaaactaacaaacatcaaaaagattatacatcataatcaagtaggatttatccccgacatgcaagactggtttaacatatgcaaaccaataaatgtgagacatcacatttacagaataaaagataacaaccacatggtcatctcaaatgactcagaaaaagcactcaacaaagtccaacatcctttcttgataaaaactctcaaaagtttatgtataaaaggaaagtttttcaatgtaataatggccattttttaaaaacccacagctaacattaaaatcaatgggggagaactaaaagctttttcactaagatccagtacaaggcaaggatagccactctcaccacttctattcaacatagtgctgaaagtactagcaagagcaatcagac----aaagaaaa-agaaaaaagaaaatgaaatgaaaggcatccgaatcagaaaggaagaagtcaaattttctccatctgcaaatgacgtgattgtatatatttaagaagcccaccaaaaaattgttacaactaataaacgaattcagtaaagttgcaggacacaaaatcaacatgcaaaaatcagtagcatttttatacacaaataacaacataaatgaaaaagaaatcaagaaagttatccaatttatgatagcattaaaaaattaaaacacttaggaataaatttaaccaagaggtgaaagatctgtacactgaaaactataaaacattgatgaaagaaactgaagaaaacacaaataaacggaaagatatcttgtgcttatggacgggaagaatga-ctgttgtttaaatgttcatattacccaaagcaatatacagatttaatgcagtccctattgaaa-tcccaatgacattcttcacagaaa-tttt--tttt-aaatcctaaaatttttactgaactataaaagaccccaaatagctaaaacaagtttgagaaagaaaaacaaagtt--ggaggcatgacacttctgc-ttcataattgtatta-caaagttatagtaatcaaaacagtatgg--tactggcataaaaacagac-acatagaccagcagaatacaatagacagcccagaaaaaaatccaaacatattta-tggtcaactaaattttgacaagcaccctaggaggacacaataataaaagattagt-cttgtc--aatgaatagtg--cttggaaatttgcatttccacgtgcaaaataatgaaattggactctaatactatacacaaaaatcaactcaaaatggataaaagacctgtatataaga---------------------------------------------------------ccttgcaattattttttggatatcacaccagaagctcaggccacaaaagcaaaaataaattaatgcaattacatcaaactaaaaagcttctgcacagcaaaggaaacaatccacaaaatgaaacaggtgcttatagattaggaaaaagtatttgtaaaccatatatc---taggggttactatccaaaatttaaagaactcatacaactcaatagtgaagaaacacacaacctgattttttaaatgggcaaaagttctcaatagccatttctccaaagaagacataaaaatggccaacaggtatatgaaaatgtgctcaacattattaatcatcagggaaatacaaatcaaaaccacgataagataccaactcacacatggctattatcaacaagtcaaaagatagcaaatgttggtgagtgtgtggagaaaaggaaactcttgtacattgttggtggggatgtggactggtacagccattgtggaaaacagtatggaagcacctaaagaaatttaaaatagaactactatatatatgacccagcaatccctcttctgggtctatacccaaagaaagtgaaatcaccaccctctaaagatatttgcactcccatgttcattgtagcattattcacggtagccaagatatggaaacaatctaagtatccactgatgaatga----ataaaggaattatgatat-----gac-----atgatatgatatgatatgatat-----gatatgttcattgtagcattatccacaatagccaagatatggaaacaacttaaatgtcccttgacagatgaatgaataaagaaactgtggggtgtgtgt--gtgtgtgtgtgtgtgtgtgtgtgtgtatgtg--taatggaatattattcagct-ctaaaaaaataatgaaatcttgccatttgccacaacatggatgaggctggaggacattatgctaagtaaaataagccagacacagaaagaaaaatattgcatgatctcacttatatgtagaatcctaaaaatatcaaaaatacagagacatagaataaaacagtggttaccaggggtatggaggtccaggggaggaaatgtggagacgtaggtcagaggacacaaagtaggaggtgtgtaggatgaacatatctagagctctaatgtactgcatgaagactatagttaataaaattgtactatgtatgggtttcatgctaaacgagtaggttttagctgctcttgctactaaaac-aaaaaaaaaaggtaactatgagagatgaggaatatgttaatttgcttcactatagtaac i macFas5.chr5 C 0 I 13 s macNem1.NW_012012466v1 13331168 2730 + 26754465 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i macNem1.NW_012012466v1 C 0 I 10 s cerAty1.NW_012001307v1 4232002 2716 - 5137665 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i cerAty1.NW_012001307v1 C 0 I 3 s colAng1.NW_012119221v1 1349274 2740 + 1448899 aatgccaatacctattaagttcttttgaagaacaatgatagaggaaatacttccaaatgcattttatgagaccagcatcaccccgatacctaagccagacaaatacatcatcataagaaaagaaaactacaggccaatttctctgattaacaatgatgtaaaaatcctcaataaaacattagtaaaccaaaactaacaaacatcaaaaagattatacatcataatcaagtaggatttatccctgacatgcaagactggtttaacgtatgcaaaccagtaaatgtgatacatcacattaacagaataaaagataacaacgacatgatcatctcaaatgactcagaaaaagcactcaacaaagtccaacatcctttcttgataaaaactctcaaaagtttatgtataaaaggaaagtttctcaatgtaataatggccattttttaaaaacccacagctaacattaaaatcaatgggggagaactaaaagctttttcaccaagatccagtacaaggcaaggatagccactctcgccacttctattcaacgtagtgctgaaagtactagcaagagcaatcagac----aaagaaaagaagaaaaaaaaaatgaaatgaaaggcatccgaatcagaacggaagaagtcaaattatctccatttgcaaatgacatgattatatatatttaagaagcccaccaaaaaattgttacaaataataaatgaattcagtaaagttgcaggacacaaaatcaacatgcaaaaatcagcagcatttttatacacaaataacaacataaatgaaaaagaaatcaagaaagttatccaatttatgatagcattaaaaaattaaaacacttaggaataaatctaaccaagaggtgaaagatctgtacattgaaaactataaaacattgatgaaagaaactgaagaaaacacaaataaacggaaagatatcttgtgcttatggatgggaagaatga-ctattgtttaaatgtccatattacccaaagcaatatacagatttaatgcaatccctatcgaaa-tcccaatgacattcttcacaaaaa-tttt--ttttaaaattctaaaatttttactgaactataaaagaccccaaatggctgaaacaattttgagaaagaaaaacaaagtt--ggaggcatgacacttctgc-ttcataattgtatta-caaagttatagtaatcaaaacagtatgg--tactggcataaaaacagac-acatagaccagcagaatacaatagacagcccagaaaaaaattcaaacatattta-tggtcaactaaattttgacaagcacactaggaggacacaataataaaagattagt-cttgtc--aacgaatagtg--cttggaaatttgcatttccacatgcaaaataatgaaattggactctaatactatacacaaaaatcaactcaaaatggataaaagaactgtatataaga---------------------------------------------------------cctcacaattattttttggatatcacaccagaaactcaggccacaaaagcaaaaataaattaatgggattacatcaaactaaaaagcttctgcacagcaaaggaaacaatccacaaaatgaaacaggtgcttatagattaggaaaaagtatttgtaaaccatatatt---taggggttactatccaaaatttgaagaactcatacaacttaatagtgaagaaacaaataacctgattttttaaatgggcaaaagttctcaatagccatttctccaaagaagacataaaaatggccaacaggtatatgaaaatgtgctcaacactattaatcattagggaaatacaaatcagaaccacgatgagataccaactcacacatggctattatcaacaagtcaaaagatagcaaatgttggtgagggtgtggagaaaaggaaagtcttgtacattgttgatggggatgtagactggtacagccattgtggaaaacagtatggaagcacctaaagaaatttaaaatagaactactatatatatgacccagcaatccctcttctgggtctatacccaaagaaagtgaaatcaccaccctctaaagatatctgcactcccatgttcattgtagcattattcacggtagccaagatatggaaacaatctaagtatccactgatcaatga----ataaaggaattatgatat-----gatatgataggatatgatatgatatgatattatgcggtatgttcattgtagcattatccacaatagccaagatatggaaacaacttaaatgtcccttgacagatgaatgaataaagaaactgtggagtgtgtgt--gtgtgtgtgtgtgtgtgtgtgtgtgtgtgta--taatggaatattatttagct-ctaaaaaaa-aatgaaatcttgccatttgccacaacatggatgaggctggaggacattacgctaagtaaaataagccagacacagaaagaaaaatattacatgatgtcacttatatgtagaatcctaaaattatcaaaaatatagagacatagaatgaaacagtggttaccaggggtatgagggtct-ggggaggaaatggggagacgtaggtcagaggacac-aagtaggaggtgtgtaggatgaacatatctagagctctaatgtactgcatgaagactatagttaataacattgtactatgtatgggtttcatgctaaacgagtaggttttagctgctcttgctactaaaac--aaaaaaaaaggtaactatgagagatgatgaatatgttaatttgcttcactatagtaac i colAng1.NW_012119221v1 C 0 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e aotNan1.NW_018493494v1 9424165 5041 - 11631747 I e cebCap1.NW_016107439v1 7006174 6243 - 7304997 I e saiBol1.JH378162 8219802 6681 - 15139346 I e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48034380 2482 + 63241923 I e manLeu1.NW_012104388v1 2051923 4764 + 2427316 I e chlSab2.chr7 122939425 4467 - 135778131 I a score=1692876.000000 s hg38.chr4_KI270787v1_alt 104724 355 + 111943 ttttttttttttttttgagacagggtttcactctgtcatctaggctggagtgcagtggagtg--------acactgtagccttggacttctgagttcaagtgatcctcccacctcagcctcctgagtagctgggactacaggtgtgtgccatcacacccagctaattttggc----tttttttttttacagatggggcttcactatgttacctaggctagtctctaattcctggcctcaagcgatcttcctg--------cctcggcctcccatagtgctggtattacaggcgtgagctgccaagcctggcctatcgtaacctttttactatatatggaccttataacatcatgtggtataccttaaatatacac s panTro5.chr4 119671934 370 - 194502333 --ttttttttttttttgagacagggtttcactctgtcatctaggctggagtgcagtggcgtgaccgtagcacactgtagccttgaacttctgagttcaagtgatcctcccacctcagcctcctgagtagctgggactacagatgtgtgccatcacacccagctaattttggc---ttttttttttttacagatggggcttcactgtgttacctaggctagtctctaattcctggtctcaagcgatcttcctgcctcggcccctcggcctcccaaagtgctggtattacaggcgtgagctgccaagcctggcctatcgtaacctttttactatatatggaccttataacatcgtgtggtataccttaaatatgcac i panTro5.chr4 C 0 C 0 s panPan2.chr4 121085777 357 - 195804263 ----ttttttttttttgagacagggtttcactctgtcatctaggctggagtgcagtggcgtgaccgtagcacactgtagccttgaacttctgagttcaagtgatcctcccacctcagcctcctgagtagctgggactacaggtgtgtgccatcacacccagctaattttggc------tttttttttacagatggggcttcactgtgttacctaggctagtctctaattcctggcctcaagcgatcttcctg--------cctcggcctcccatagtgctggtattacaggcgtgagctgccaagcctggcctatcgtaacctttttactatatatggaccttataacatcatgtggtataccttaaatatacac i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4514786 367 - 17550833 tttttttttttttttttagacagggtttcattctgtcatctaggctggagtgcagtggagtgaccatagcacactgtagccttgaacttctgagttcaagtgatcctcccacctcagcctcctgagtagctgggactacaggtgtgtgccatcacatccagctaattttggctttttttttttttttacagatggggcttcactatgttacctaggctagtctctaattcctggcctcaagcgatcttcctg--------cctcagcctcccatagtgctggtattacaggcgtgagctgccaagcctggcctatcgtaacctttttactatatatggaccttataacatcatgtggtataccttgaatatacac i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69387011 355 - 118206036 ------ttttttttttgagacagggtttcactctgtcatctaggctggagtgcagtggcgtggccatagcacactgcagccttgaacttctgagttcaagtgatcctcccacctcagcctcctgagtagctgggactacagatgtgtgccatcacacccagctaattttggc------tttttttttgcagatggggtctcactatgttacctaggctagtctctaattcctggcctcaagcgatcttcctg--------cctcggcctcccaaagtgctggtattacaggtgtgagctcccaagcccggcctagcgtaacctttttactatatatggaccttataacatcgtgtggtataacttaaatatacac i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111597616 360 - 190429646 ttttttttttttttttaaggcagggtttcactttgttatccaggctggagtgcaatggcgtgaccatagcacactgtagccttgaacttctgagttcaagtgatcctcccacctcagcctcctgagtagctgagactaggggtgtgtgccatcacacccagctacttttggc-------ttttttttacagatggggtctcactatgttacctaggctagtctttaattcctggcctcaagcgatcttcctg--------cctcggcctcccgaagtgctggtattacaggcatgagctgccaagcctggcctatagtaacctttttactgtatatggaccttataacatcgtgtggcataccttaaatatacac i rheMac8.chr5 I 11 C 0 s macFas5.chr5 110766831 360 - 189454096 ttttttttttttttttaaggcagggtttcactttgttatccaggctggagtgcaatggcgtgaccatagcacactgtagccttgaacttctgagttcaagtgatcctcccacctcagcctcctgagtagctgagactaggggtgtgtgccatcacacccagctacttttggc-------ttttttttacagatggggtctcactatgttacctaggctagtctttaattcctggcctcaagcgatcttcctg--------cctcggcctcccgaagtgctggtattacaggcatgagctgccaagcctggcctatagtaacctttttactgtatatggaccttataacatcgtgtggcataccttaaatatacac i macFas5.chr5 I 13 C 0 s macNem1.NW_012012466v1 13333908 360 + 26754465 ttttttttttttttttaaggcagggtttcactttgttatccaggctggagtgcaatggcgtgaccatagcacactgtagccttgaacttctgagttcaagtgatcctcccacctcagcctcctgagtagctgagactaggggtgtgtgccatcacacccagctacttttggc-------ttttttttacagatggggtctcactatgttacctaggctagtctttaattcctggcctcaagcgatcttcctg--------cctcggcctcccgaagtgctggtattacaggcatgagctgccaagcctggcctatagtaacctttttactgtatatggaccttataacatcgtgtggcataccttaaatatacac i macNem1.NW_012012466v1 I 10 C 0 s cerAty1.NW_012001307v1 4234721 360 - 5137665 ttttttttttttttttaaggcagggtttcactttgttatccaggctggagtgcaatggcgtgaccatagcacactgtagccttgaacttctgagttcaagtgatcctcccacctcagcctcctgagtagctgagactaggggtgtgtgccatcacacccagctacttttggc-------ttttttttacagatggggtctcactatgttacctaggctagtctttaattcctggcctcaagccatcttcctg--------cctcggcctcccgaagtgctggtattacaggcgtgagctgccaagcctggcctatagtaaccttttcactgtatatggaccttataacatcgtgtggcataccttaaatatacac i cerAty1.NW_012001307v1 I 3 C 0 s manLeu1.NW_012104388v1 2056687 360 + 2427316 ttttttttttttttttaaggcagggtttcactttgttatctaggctggagtgcaatggcgtgaccatagcacactgtagccttgaacttctgagttcaagtgatcctcccacctcagcctcctgagtagctgagactaggggtgtgtgccatcacacccagctacttttggc-------ttttttttacagatgatgtctcactatgttacctaggctagtctttaattcctggcctcaagcgatcttcctg--------cctcggcctcccgaagtgctggtattacaggcgtgagctgccaagcctagcctatagtaacctttttactgtatatggaccttataacatcgtgtggcataccttaaatatacac i manLeu1.NW_012104388v1 I 4764 C 0 s colAng1.NW_012119221v1 1352014 361 + 1448899 ttttttttttttttttaaggcagggtctcactctgttatctaagctggagtgcaatggcgtgaccatagcacgctgtagccttgaacttctgagttcaagtgatcctcccacctcagcctcctgagtagctgagactagaggtgtgtgccatcacacccagctacttttgac------tttttttttacagatggagtctcactatgttacctaggctagtctctaattcctggcctcaagcaattttcctg--------cctcggcctcctgaagtgctggtattacaggcgtgagctgccaagcctggccaatagtaacctttttactgtatatggaccttataacaccgtgtggtataccttaaatatacac i colAng1.NW_012119221v1 C 0 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e aotNan1.NW_018493494v1 9424165 5041 - 11631747 I e cebCap1.NW_016107439v1 7006174 6243 - 7304997 I e saiBol1.JH378162 8219802 6681 - 15139346 I e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48034380 2482 + 63241923 I e chlSab2.chr7 122939425 4467 - 135778131 I a score=4793591.000000 s hg38.chr4_KI270787v1_alt 105079 844 + 111943 aataaattttatttTAAAAAatagacaaaagattaactcagagtggatcgatgatctaaatagaagagttaaaaccattaaagcagaaaacaagtctttatgatcttggattttataacagattcttagctatgacaccaagagcacaaacattaaaagaaaaaataaactgaacttcatcaaactactttttgcatcaaaggacttcctcaagaaggtgaaaagaca----acaaaatgggagaaaatatttgcaaatcatatatctgatcatatccagaatatgtaaggaacacttacaatttaataacaataaggcaaacaacccaatttaaaactgggcaaagaacttgaatagatatttctccaaagatatacaaatggtcaataggtattagaacaattgctcaacatcattaatcatttaagaaatgcaaatcaaaatcacaatgagataccacttcacacctgctacaatggccataata-----aaaagaaaagaaaaataacaagtgttagcaagaatgtggagaaattggaatctgtgggcattgctggtgggaatgtaatatggtgtagctgctgtggaaaacagtttggcagtaactcaaaaaagtaattgattatttgactcatcaattccactcctaagtatatacccaaaagaactaaaaacacttactcaaacagacatttgtacaccaatgttccctgcagcattattcaccatagccaaaaggtggaaacaatccaaatgtccatcaacagataaatggataaacaaaatttactatgcatatactgtggaatattatgcaggcattaaaaagaatgaagtt---atacatgctaca s panTro5.chr4 119672304 847 - 194502333 aataaattttatttTAAAAAatagacaaaagattaactcagagtggatcgatgatctaaatagaagagttaaaaccattaaagcagaaaacaagtctttatgatcttggattttataacagattcttagctatgacaccaagagcacaaacattaaaagaaaaaataaactggacttcatcgaactactttttgcatcaaaggacttcctcaagaaggtgaaaagaca----acaaaacaggagaaaatatttgcaaatcatatatctgatcatatccagaatatgtaaggaacacttacaattcaataacaataaggcaaacaacccaatttaaaaatgggcaaagaacttgaatagatattcctccaaagatatacaaatggtcaataggtattagaacaattgctcaacatcattagtcatttaggaaatgcaaatcaaaatcacaatgagataccacttcacacctactacaatggccataata-----aaaagaaaagaaaaataacaagtgttagcaagaatgtggagaaattggaatctgtgggcattgctggtgggaatgcaatatggtgtagctgctgtggaaaacagtttggcagtaactcaaaaaagtaattgattatatgactcatcaattccactcctaagtatatacccaaaagaactaaaaacacttactcaaacagacatttgtacaccaatgttccctgcagcattattcaccatagccaaaaggtggaaacaatccaaatgtccatcaacagataaatggatgaacaaaatttactatgcacatactgtggaatattatgcaggcattaaaaagaatgaagttataatacatgctaca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121086134 847 - 195804263 aataaattttatttTAAAAAatagacaaaagattaactcagagtggatcaatgatctaaatggaagagttaaaaccattaaagcagaaaacaagtctttatgatcttggattttataacagattcttagctatgacaccaagagcacaaacattaaaagaaaaaataaactagacttcatcgaactactttttgcatcaaaggacttcctcaagaaggtgaaaagaca----acaaaacaggagaaaatatttgcaaatcatatatctgatcatatccagaatatgtaaggaacacttacaattcaataacaataaggcaaacaacccaatttaaaaatgggcaaagaacttgaatagatattcctccaaagatatacaaatggtcaataggtattagaacaattgctcaacatcattagtcatttaggaaatgcaaatcaaaatcacaatgagataccacttcacacctactacaatggccataata-----aaaagaaaagaaaaataacaagtgttagcaagaatgtggagaaattggaatctgtgggcattgctggtgggaatgcaatatggtatagctgctgtggaaaacagtttggcagtaactcaaaaaagtaattgattatatgactcatcaattccactcctaagtatatacccaaaagaactaaaaacacttactcaaacagacatttgtacaccaatgttccctgcagcattattcaccatagccaaaaggtggaaacaatccaaatgtccatcaacagataaatggatgaacaaaatttactatgcacatactgtggaatattatgcaggcattaaaaagaatgaagttataatacatgctaca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4515153 846 - 17550833 aataaattttatttTAAAAAatagacaaaagattaactcagagtggatcgatgatctaaatagaagagttaaaaccattaaagcagaaaacaagtctttatgatcttggattttataacagattcttagctatgacaccaagagcacaaacattaaaagaaaaaataaactggacttcatcaaactactttttgcatcaaaggacttcctcaagaaggtaaaaagaca----acaagatgggagaaaatatttgcaaatcatatatctgatcatatccagaatatgtaaggaacacttacaatttaataacaataaggcaaacaacccaatttaaaaatgggcaaagaacttgaatagatatttctccaaagatatacaaatggtcaataggtattagaacaattgctcaacatcattagtcatttaggaaatgcaaatcaaaatcacaatgagataccacttcacacctactacaatggccataata-----aaaagaaaagaaaaataacaagtgttagcaagaatgtggagaaattggaatctgtgggcattgctggtgggaatgtaatatggtgtagctgctgtggaaaacagtttagcagtaactc-aaaaagtaattgattatatgactcatcaattccactcctaagtatatacccaaaagaactaaaaacacttactcaaacagacatttgtacaccaatgttccctgaagcattattcaccatacccaaaaggtggaaacaatccaaatgtccatcaacagataaatggataaacaaaatttactatgcacatactgtggaatattatgcaggcattaaaaagaatgaagttataatacatgctaca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69387366 842 - 118206036 aataaattttatttTAAAAAatagacaaaagattaactcagag----tcgatgatctaaa-agaagagttaaaaccattaaagcagaaaacaagtctttatgaccttggatttcataacagattcttagctatgacaccaagagcacaaacattaaaagaaaaaataaaatggacttcatcaaactactttttgcatcaaaggacttcctcaagaaggtgaaaagaca----acaaaatgggagaaaatatttgcaaatcatatatctgatcatatccagaatatgtaaggaacacttacaattcaataacaataaggcaaacaacccagtttaaagatgggcaaagaacttgaatagatatttctccaaagatatacgaatggtcaataggtactagaacaattgttcaacatcataagtcatttaggaaatgcaaataaaaatcacaacgagataccacttcatacctactacaatggccataata-----aaaagaaaagaaaaataacaagtgttagcaagaatgtggagaaattggaatctgtgggcgttgctggtgggaatgtaatatggtgtagctgctgtggaaaacagtctggcagtaactcaaaaaagtaattgattatatgactcatcaattgcactcgtaagtatatacccaaaagaactgaaaacacgtactcaaacagacacttttacaccaatgtttgctgcagcattattcaccatagccaaaaggtggaaacaatccaaatgtccatcaacagataaatggataaacaaaatgtactatgcacatactgtggaatattatgcagccattaaaaagaatgaagttataatgcatgctaca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111597976 846 - 190429646 aataaattttatttTAAAAAatagacaaaagattaactcagagtggatcgatgatctaaatagaagagttaaaacaattaaagcagaaaacaagtctttatgaccttggatttcataacagattcttagctatgacaccaagagcacaaacattaaaagaaaaaataaactgcacttcatcaaactgctttttgcatcaaaggacttcctcaagaaggtgaaaagaca----ataaaatgggagaaaatatttgcaaatcatatatctgatcatatccagaatatgtaaggaacacttacaattcaataacaataaggcaaacaacccaatttaaaactgggcaaagaacttgaatagatatttctccaaagatatacgaatggccaataggtattagaacaattgctcaacatcattagtcatttaggaaatgcaaatcaaaatcacagtgagacaccacttcacacctactacaatggccataata-----aaaagaaaagaaaaataacaagtgttagcaagaatgtagggaaattggaatctgtgggcattgctggtgggaatgtaatatggtgtagctgctgtggaaaacagtttggcagtaactcaaaaaagtaattgattatatgactcatcaattccactcctaagtaaatgcccaaaataactgaaaacacgtactcaaacagacatttgtacatcaatgttcgctgcagcattattcaccatagccaaaaggtggaaacgatcc-aatatccattgacagataaatggataaacaaaatgtactatgcacatactgtggaatattatgcagccattaaaaagaatgaagttataacacatactaca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110767191 846 - 189454096 aataaattttatttTAAAAAatagacaaaagattaactcagagtggatcgatgatctaaatagaagagttaaaaccgttaaagcggaaaacaagtctttatgaccttggatttcataacagattcttagctatgacaccaagagcacaaacattaaaagaaaaaataaactgcacttcatcaaactgctttttgcatcaaaggacttcctcaagaaggtgaaaagaca----ataaaatgggagaaaatatttgcaaatcatatatctgatcatatccagaatatgtaaggaacacttacaattcaataacaataaggcaaacaacccaatttaaaactgggcaaagaacttgaatagatatttctccaaagatatacgaatggccaataggtattagaacaattgctcaacatcattagtcatttaggaaatgcaaatcaaaatcacagtgagacaccacttcacacctactacaatggccataata-----aaaagaaaagaaaaataacaagtgttagcaagaatgtagggaaattggaatctgtgggcattgctggtgggaatgtaatatggtgtagctgctgtggaaaacagtttggcagtaactcaaaaaagtaattgattatatgactcatcaattccactcctaagtaaatacccaaaataactgaaaacacgtactcaaacagacatttgtacatcaatgttcgctgcagcattattcaccatagccaaaaggtggaaacgatcc-aatatccattgacagataaatggataaacaaaatgtactatgcacatactgtggaatattatgcagccattaaaaagaatgaagttataacacatactaca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13334268 846 + 26754465 aataaattttatttTAAAAAatagacaaaagattaactcagagtggatcgatgatctaaatagaagagttaaaaccattaaagcggaaaacaagtctttatgaccttggatttcataacagattcttagctatgacaccaagagcacaaacattaaaagaaaaaataaactgcacttcatcaaactgctttttgcatcaaaggacttcctcaagaaggtgaaaagaca----ataaaatgggagaaaatatttgcaaatcatatatctgatcatatccagaatatgtaaggaacacttacaattcaataacaataaggcaaacaacccaatttaaaactgggcaaagaacttgaatagatatttctccaaagatatacgaatggccaataggtattagaacaattgctcaacatcattagtcatttaggaaatgcaaatcaaaatcacagtgagacaccacttcacacctactacaatggccctaata-----aaaagaaaagaaaaataacaagtgttagcaagaatgtagggaaattggaatctgtgggcattgctggtgggaatgtaatatggtgtagctgctgtggaaaacagtttggcagtaactcaaaaaagtaattgattatatgactcatcaattccactcctaagtaaatacccaaaataactgaaaacatgtactcaaacagacatttgtacatcaatgttcgctgcagcattattcaccatagccaaaaggtggaaacgatcc-aatatccattgacagataaatggataaacaaaatgtactatgcatgtactgtggaatattatgcagccattaaaaagaatgaagttataacacatactaca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4235081 842 - 5137665 aataaattttatttTAAAAAatagacaaaagattaactcagagtggatcgatgatctaaatagaagagttaaaaccattaaagcggaaaacaagtctttatgaccttgaatttcataacagattcttagctatgacaccaagagcaccaacattaaaagaaaaaataaactgcacttcatcaaactgctttttgcatcaaaggacttcctcaagaaggtgaaaagaca----ataaaatgggagaaaatatttgcaaatcatatatctgatcatatccagaatatgtaaggaacacttacaattcaataacaataaggcaaacaacccaatttaaaactgggcaaagaacttgaatagatatttctccaaagatatacgaatggccaataggtattagaacaattgctcaacatcattagtcatttaggaaatgcaaatcaaaatcacagtgagataccacttcacacctactacaatggccataata-----aaaagaaaagaaaaataacaagtgttaacaacaatgtagggaaattggaatctgtgggcattgctggtgggaatgtaatatggtgtagctgctgtggaaaacagtttggcagtaactcaaaaaagtaattgattatatgactcatcaattccactcctaagtaaatacccaaaataactgaaaacacgtact----cagacatttgtacatcaatgttcgctgcagcattattcaccatagccaaaaggtggaaacgatcc-aatatccattgacagataaatggataaacaaaatgtactatgcacatactgtggaatattatgcagccattaaaaagaatgaagttataacacatactaca i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 2057047 846 + 2427316 aataaattttatttTAAAAAatagacaaaagattaactcagagtggatcgatgatctaaatagaagagttaaaaccattaaagcggaaaacaagtctttatgaccttgaatttcataacagattcctagctatgacaccaagagcacaaacattaaaagaaaaaataaactgcacttcatcaaactgctttttgcatcaaaggacttcctcaagaaggtgaaaagaca----ataaaatgggagaaaatatttgcaaatcatatatctgatcatatccagaatatgtaaggaacacttacaattcaataacaataaggcaaacaacccaatttaaaactgggcaaagaacttgaatagatatttctccaaagatatacgaatggccaataggtattagaacaattgctcaacatcattagtcatttaggaaatgcaaatcaaaatcacagtgagataccacttcacacctattacaatggccataata-----aaaagaaaagaaaaataacaagtgttagcaagaatgtagggaaattggaatctgtgggcattgctggtgggaatgtaatatggtgtagctgctgtggaaaacagtttggcagtaactcaaaaaagtaattgattatatgactcatcaattccactcctaagtaaatacccaaaataactgaaaacacgtactcaaacagacatttgtacatcaatgttcgctgcagcattattcaccatagccaaaaggtggaaacgatcc-aatatccattgacagataaatggataaacaaaatgtactatgcacatactgtggaatattatgcagccattaaaaagaatgaagttataacacatactaca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1352375 846 + 1448899 aataaattttatttTAAAAAatagacaaaagattaactcagagtggatcaatgatctaaacagaagagttaaaaccattaaagcagaaaacaagtctttatgaccttggatttcataacagattcttagctatgacaccaagagcacaaacattaaaagaaaaaataaactgcacttcattaaactgctttttgcatcaaaggacttcctcaagaaggcgaaaagaca----acaaaatgggagaaaatatttgcaaatcatatatctgatcatatccagaatatgtaaggaacacttacaattcaataacaataaggcaaacaacccaatttaaaactgggcaaagaacttgaatagatatttctccaaagatatacgaatggccaataggtattagaacaattgctcaacatcattagtaatttaggaaatgcaaatcaaaatcacagtgagataccacttcacacctactacaatggccataata-----aaaagaaaagaaaaataacaagtgttagcaagaatgtggggaaattggaatctgtggacattgctggtggaaatgtaatatggtgtagctgctatggaaaacagtttggcagtaactcagaaaagtaattgattatatgattcatcaattccactcctaagtaaatacccaaaataactgaaaacatgtactcaaacagacatttgtacatcaatgttcactgcagtattattcaccatagccaaaaggtggaaacaatcc-aatatccattgacagataaatggataaacaaaatgtactatgcacatactgtggaatattatgcagccattaaaaagaatgaagttataacacatgctaca i colAng1.NW_012119221v1 C 0 C 0 s aotNan1.NW_018493494v1 9429206 844 - 11631747 AATACATTTTATTTTAAAAAatacacaaaagattaatgcagaggggatcaatgatctaaatagaagagttaaaaccattaaagcagaaaacaaatctttatgaccttggatttcataacagattcttagctatcacaccaagagcacaaatagcaaaagaaaaaataaactggacttcatcaaactactttttgc-tcaaaagacatcctcaagaaggtgaaaagacaacctacaaaatgggagaaaatatttgcaaatcacatatctgataatatccagaatatgtaaggaactcttacaattcaaaaacaataaggcaaacaacccaatttaaaaatgggtaaataacttgaataggtatttctccaaatatatatgaatggccaataggtattaaaccaa-tgctcaacatcattggccatttaggaaatacaaatcaaaatcacaatgagataacacttcacacctaccagaactgccataataaaaagaaaagaaaagaaaaataacaagtgttagcaagaatgtga-------ggaatctgtgggcattgcttgtgggaat---atatggtgtaggtgctgtgaaaaacagtttggcagttactcaaaaaagcaattgattacatgactcattaattccactcctaaatatatacccaaaagaactgaaaacatgtacgcaaacagacatttgttcaccagtgcttgctgtaacattattcactatagccaaaaggtggaaacaatccaaatgtccatcaacagataaatggataaacaaaatgtagtttgcacatactgcggaatattatgcagcctttaaaaagaatagagttataatacatgctaca i aotNan1.NW_018493494v1 I 5041 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e cebCap1.NW_016107439v1 7006174 6243 - 7304997 I e saiBol1.JH378162 8219802 6681 - 15139346 I e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48034380 2482 + 63241923 I e chlSab2.chr7 122939425 4467 - 135778131 I a score=5704643.000000 s hg38.chr4_KI270787v1_alt 105923 869 + 111943 acatggatgaaccctgaaaacatcatgctaagttaaataagccagccacaaaagaaaagctattgtaagattccccttatatatctagaataggcaaattcatagagacagaaagtcaattagaatctatcaggggttgggggaagtgggtaatggagagttattacttaatggtcacagaatttctgcatggggtgacagaaaagatttggaaacaaatagtggtgattgctgcacaatggtgttgtatgtgtaattaatcccactgaattgtaaacttaaaatggttggaatggcatatttacattat-acatattttaccacaat-aaaaaaatcttaagatatgctcataacaggtagaagctattacttaaagttttaagtaccctaaaatttcaagtgtttttaaatctagtagccattgcagaaaattgttgcctagcaggtcagaaaatgaggtcagcactacaaaggaatttgggggacaatgaaacagttctgtacataaccattatggtgaatacatgactgtgtatttgtcaagacctgtagaactagagttgaacaaacaaagaaattatagataatgacagctaggtttgtatctgtgggagaaataaattacaaacaggctaaaggaggattctagaacaatccctgtgctaatggactagagttagagatatcattacgaactaatgtttatttaatatgtatacagatggatatacagaaataaatataaacatatggatttgtatacacacaatcattcgctagctctaaaagctgagaggggctataagcaatgaccatctagaggcaatggggaatcctaggcgccagattttgggttctaaatgccattc s panTro5.chr4 119673151 868 - 194502333 acatggatgaaccctgaaaacatcatgctaagttaaataagccagccacaaaagaaaagctattgtaagattccccttatatatctagaataggcaaattcatagagacagaaagtcaattagaatctatcaggggttgggggaagtgggtaatggagagttattacttaatggtcacagaatttctgcatgcggtgacagaaaagatttggaaacagatagtggtgattgctgcacaatggtgttgtatgtgtaattaatcccactgaattgtaaacttaaaatggttggaatggcatatttacattat-acatattttaccacaat--aaaaaatcctaagatatgctcataacaggtagaagctattacttaaggttttaagtaccctaaaatttcaagtgtttttaaatctagtagccattgcagaaaattgttgcctagcaggtcagaaaatgaggtcagcactacaaaggaatttgggggacaatgaaacagttcggtacataatcattatggtgaatacatgactgtgtatttgtcaatacctgtagaactagagttgaacaaacaaagaaattatagataatgacagctaggtttgtatctgtgggagaaataaattacaaacaggctaaaggaggattctagaacaatccctgtgctaatggactagagttagagatatcattacgaactaatgtttatttaatatgtatacagatggatatacagaaataaatacagacacatggattggtatacacacaatcattcgctagctctaaaagctgagaggggctataagcaatgaccatctagaggcaatggggaatcctaggcaccagattttgggttctaaatgccattc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121086981 868 - 195804263 acatggatgaaccctgaaaacatcatgctaagttaaataagccagccacaaaagaaaagctattgtaagattccccttatatatctagaataggcaaattcatagagacagaaagtcaattagaatctatcaggggttgggggaagtgggtaatggagagttatttcttaatggtcacagaatttctgcatgcggtgacagaaaagatttggaaacagatagtggtgattgctgcacaatggtgttatatgtgtaattaatcccactgaactgtaaacttaaaatggttggaatggcatatttacattat-acatattttaccacaat--aaaaaatcctaagatatgctcataacaggtagaagctattactcaaggttttaagtaccctaaaatttcaagtgtttttaaatctagtagccattgcagaaaattgttgcctagcaggtcagaaaatgaggtcagcactacaaaggaatttgggggacaatgaaacagttcggtacataatcattatggtgaatacatgactgtgtatttgtcaatacctgtagaactagagttgaacaaacaaagaaattatagataatgacagctaggtttgtatctgtgggagaaataaattacaaacaggctaaaggaggattctagaacaatccctgtgctaatggactagagttagagatatcattacgaactaatgtttatttaatatgtatacagatggatatacagaaataaatatagacacatggattggtatacacacaatcattcgctagctctaaaagctgagaggggctataagcaatgaccatctagaggcaatggggaatcctaggcaccagattttgggttctaaatgccattc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4515999 868 - 17550833 acatggatgaaccctgaaaacatcatgctaagttaaataagccagccacaaaagaaaagctattgtaagattccccttatatatctagaataggcaaattcatagagacagaaagtcaattagaatctatcaggggttgggggaagtgggtaatggagagttattacttaatggtcacagaatttctgcatggggtgacagaaaagatttggaaacagatagtggtgattgctgcacaatggtgttgtatgtgtaattaatcccactgaattgtaaacttaaaatggttggaatggcatatttacattat-acatattttaccacaat-aaaaaaatcttaagatatgctcataacaggtagaagctattacttgaggttttaagtaccctaaaatttcaagtgtttttaaatctagtagccagtgcaggaaattgttgcctagcaggtcagaaaatgaggtcagcactacaaaggaatttgggggacaatgaaacagttctgtacataaccattatggtgaatacatgactgtgtatttgtcaagacctgtagaactaaagttgaacaaacaaagaaattatagaaaatgacagctaggtttgtatctgtgggagaaataaattacaaacaggctaaaggaggattctagaacaatccctgtgctaatggactagagttagagatatcattacgaactaatgtttatttaatatgtatacagatggatatacagaaataaatatagacacatggattggtatacacacaatcatttgctagctctaaaagctgagaggggctataagcaatgaccatctagaggcaatggggaatcctaggcgccagatttt-ggttctaaatgccattc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69388208 853 - 118206036 acatggatgaaccctgagaacatcatgctaagttaaataagccagccacgaaagaaaaactattgtaagattccccttatatatctagaataggcaaattcatagagacagaaagtcgattagaatctatcagggactgggggaagtgggtaatggagagttattacttaatggtcacagaatttctgcatggggtgacagaaaagatttggaaaccgatagtggtgatcgctgcgcaatggtgttgtatgtgtaattaatcccactgaattgtaaacttaaaatggttggaatggcatatttacgttat-acatattttaccacaat-aaaaaaatcttaagatatgctcataacaggtagaagctattatttaaggttttaagtaccctaaaatttcaagtgtttttaaatctagtagccattgcagaaaattgttgcctaacaggtcagaaaatgaaggcagcactacaaaggaatttgggggacaatgaaacagttctgtacataaccattacag------------tgtgtatttgtcaagacccgtagaactagagttgaacaaacaaacaaattatagataatgacagctaggtttgtatctgtgggagaaataaattacaaacaggctaaaagaaaattctagaacaatccctgtgctaatggactagagttagagatatcattatgaacaaatg----tttaatatgtatacagatggatatacagaaataaatatagacacatggattggtatacacacaatcatttgctagctctaaaagctgagaggggttataagcaatgaccatctagaggcaatggggaatcctaggcgccagattttgggttctaaatgccattc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111598822 870 - 190429646 acatggaagaaccctgaaaacatcatgctaagttaaataagccagccacaaaagaaaaactattgtaagattccccttacatatctagaataggcaaattcatagagacaaaaagtcgattagaatctatcaggggctgggggaagtgggtaatggagagttattacttaatggtcacagaaatactgcatagggtgacagaaaagatttggaaacagagagtgttgatcactgcacaatggtgttgtatgtgtaattaatcccactgaattgtacacttaaaatggttggaatggcatatttacattat-acatattttaccacaataaaaaaaatcttaagatatgctcataacaggtagaagctattagttaaggttttaagtaccctaaaatttcaagtgtttttaaacctagtagccattgcagaaaattgttgcctagcaggtcagaaaatgagggcagcactacaaaggaatttgggggacaatgaaatagttctgtacataaccattatggtgaatacatgactgtgtatttctcaagacctgtagaactacagttgaacaaagaaagaaattatagataatgacagctaggtttgtatctgtgggagaaataaattacaaacaggctaaaggaaaattctagaacaatccctgtgctaatggactcgagttagagatatcattatgaactaatgtttatttaatatgtatacagatggatatacagaaataaatatagacacaaggattggtatacacacaatcatttgctagctctataagctgagaggggctataagtaatgaccacctagaggcaatggggaatcctaggggccagattttgggttctaaacgccactc i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110768037 867 - 189454096 acatggaagaaccctgaaaacatcatgctaagttaaataagccagccacaaaagaaaaactattgtaagattccccttacatatctagaataggcaaattcatagagacaaaaagtcgattagaatctatcaggggctgggggaagtgggtaatggagagttattacttaatggtcacagaaatactgcatggggtgacagaaaagatttggaaacagagagtgttgatcactgcacaatggtgttgtatgtgtaattaatcccactgaattgtacacttaaaatggttggaatggcatatttacattat-acatattttacc---ataaaaaaaaTCTTAAGATATGCTCATAACAGGTAGAAGCTATTAGTTAAGGTTTTAAGTACCCTAAAATTTCAAGTGTTTTTAAACCTAGTAGCCATTGCAGAAAATTGTTGCCTAGCAGGTCAGAAAATGAGGGCAGCACTACAAAGGAATTTGGGGGACAATGAAATAGTTCTGTACATAACCATTATGGTGAATACATGACTGTGTATTTCTCAAGACCTGTAGAactacagttgaacaaagaaagaaattatagataatgacagctaggtttgtatctgtgggagaaataaattacaaacaggctaaaggaaaattctagaacaatccctgtgctaatggactcgagttagagatatcattatgaactaatgtttatttaatatgtatacagatggatatacagaaataaatatagacacaaggattggtatacacacaatcatttgctagctctataagctgagaggggctataagtaatgaccacctagaggcaatggggaatcctaggggccagattttgggttctaaacgccattc i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13335114 863 + 26754465 acatggaagaaccctgaaaacatcatgctaagttaaataagccagccacaaaagaaaaactattgtaagattccccttacatatctagaataggcaaattc-------taaaaagtcgattagaatctatcaggggctgggggaagtgggtaatggagagttattacttaacggtcacagaaatactgcatggggtgacagaaaagatttggaaacagagagtgttgatcactgcacaatggtgttgtatgtgtaattaatcccactgaattgtacacttaaaatggttggaatggcatatttacattat-acatattttaccacaataaaaaaaatcttaagatatgctcataacaggtagaagctattagttaaggttttaagtaccctaaaatttcaagtgtttttaaacctagtagccattgcagaaaattgttgcctagcaggtcagaaaatgagggcagcactacaaaggaatttgggggacaatgaaatagttctgtacataaccattatggtgaatacatgactgtgtatttctcaagacctgtagaactacagttgaacaaagaaagaaattatagataatgacagctaggtttgtatctgtgggagaaataaattacaaacaggctaaaggaaaattctagaacaatccctgtgctaatggactcgagttagagatatcattatgaactaatgtttatttaatatgtatacagatggatatacagaaataaatatagacacaaggattggtatacacacaatcatttgctagctctataagctgagaggggctataagtaatgaccacctagaggcaatggggaatcctaggggccagattttgggttctaaacgccattc i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4235923 870 - 5137665 acatggatgaaccctgaaaacatcatgctaagttaaataagccagccacaaaagaaaaactattgtaagattccccttatatatctagaataggcaaattcatagagacagaaagtcgattagaatctatcaggggctgggggaagtgggtaatggagagttattacttaatggtcacagaattactgcatggggtgacagaaaagatttggaaacagatagtgttgatcactgcacaatggtgttgtatgtgtaattaatcccactgaattgtacacttaaaatggttggaatggcatatttacattat-acatattttaccacaataaaaaaaatcttaagatatgctcataacaggtagaagctattagttaaagttttaagtaccctaaaatttcaagtgtttttaaacctagtagccattgcagaaaattgttgcctagcaggtcagaaaatgagggcagcactacaaaggaatttgggggacaatgaaacagttctgtacataaccattatggtgaatacatgactgtgtatttctcaagacctgtagaactacagttgaacaaagaaagaaattacagataatgacagctaggtttgtatctgtgggagaaataaattacaaacaggctaaaggaaaattctagaacaatccctgtgctaatggactagagttagagatatcattatgaactaatgtttatttaatatgtatacagatggatatacagaaataaatatagacacaaggattggtatacacacaatcatttgctagctctataagctgagagaggctataagcaatgaccacctagaggcaatggggaatcctaggggccagattttgggttctaaacgccattc i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 2057893 870 + 2427316 acatggatgaaccctgaaaacatcatgctaagttaaataagccagccacaaaaggaaaactattgtaagattccccttatatatctagaataggcaaattcatagagacagaaagtcgattagaatctatcaggggctgggggaagtgggtaatggagagttattacttaatggtcacagaattgctgcatggggtgacagaaaagatttggaaacagatagtgttgatcactgcacaatggtgttgtatgtgtaattaatcccactgaattgtacacttaaaatggttggaatggcatatttacattat-acatattttaccacaataaaaaaaatcttaagatatgctcataacaggtagaagctattagttaaggttttaagtaccctaaaatttcaagtgtttttaaacctagtagccattgcagaaaattgttgcctagcaggtcagaaaatgagggcagcactacaaaggaatttgggggacaatgaaactgttctgtacataaccattatggtgaatacatgactgtgtatttctcaagacctgtagaactacagttgaacaaagaaagaaattatagataatgacagctaggtttgtatctgtgggagaaataaattacaaacaggctaaaggaaaattctagaacaatccctgtgctaatggactagagttagagatatcattatgaactaatgtttatttaatatgtatacagatggatatacagaaataaatacagacacaaggattggtatacacacaatcatttgctagctctataagctgagaggggctataagcaatgaccacctagaggcaatggggaatcctaggggccagattttgggttctaaacaccattc i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1353221 868 + 1448899 acatggatgaaccctgaaaacatcatgctaagttaaataagacagccacaaaagaaaaactattgtaagattcccctcatatatctagaataggcaaattcatagagacagaaagtcaattagaatctatcaggggctgggggagttgggtaatcgagagttattacttaatggtcacagaatttctgtatggggtgatagaaaagatttggaaacagatagtggtgatcactgcacaatggtgttgtatgtgtaattaatcccactgaattgtacacttaaaatggttggaatggcatatttatattat-acatattttaccacaataaaaaaa--cttaagatatgctcataacaggtagaagctattagttaaggttttaagtaccctaaaatttcaagtgtttttaaacctagtagccattgcagaaaattgttgcctagcaggttagaaaatgagggcagcactaaaaaggaatctgggggacaatgaaacagttctgtacataaccattatggtgaatacatgactgtgtatttctcaagacccatagaactagagttgaacaaagaaagaaattatagataatgacagctaggtttgtatctgtgggagaaataaattacaaacaggctaaaggaaaattctagaacaatccctgtgctaatggactagagctagagatatcattatgaactaatgtttatttaatatgtatacagatgggtatacagaaataaatatagacacatggattggtatacacacaatcatttgctagctctataagctgagaggggctataagcaatgaccacctagaggcaatggggaatcctagtggccagattttgggttctaaacgccattc i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8226483 865 - 15139346 acatggataaaccctgaaaacatcatgctaagttaaataagccagccactaaagaaaaactattgtaagattccccttatatatctagaaaaggcaaattcatagagacagaaagttgattagaatctatcagggtctgggtaaagtgggtaatggagagttattacttaacagtcacagaagttctgcatggggtgacagaaaagatttggaaacagatagtggttattgctgtgcaatggtgttctatgtgtaattaatcccactgaattgtacacttgaaacggttggaatggcatacttacattat-atatattttaccacaat--aaaaaaTTTTAAGATATGCTTGTAACATGTAGAAACTATTACTTAAGGTTTTAAGCACCCTAACATTTCAAGTGTTTTTAAATCTAGTAGCCATTGCAAAAAAATATTATCTAGCAGATCAGAAAATGAAGACAggagtacaaaggaatttgggggacaatgaaacagttctgtac---accattatggtggatacatgatggtgtatttgtcaagacctgtagaaCTagagttgaacaaacaaagaaattatagataatgacagccaggtttgtatctgtgggaaaaataaattgcaaactggcaaaaggaaaattctagaataatccctgtgctaatggcctcgagttagtgatatcattatgaactaatatttatttaatttgtatgcagatatgtatacagaaataaatatagacataaggagtggtatacacacaatcatttgttagctctataagctgagaagggatgtaagcaatgaccacctacttgcaatggggaatcccaggggccagaatgtgtgttctaaatgccatgc i saiBol1.JH378162 I 6681 C 0 s aotNan1.NW_018493494v1 9430050 859 - 11631747 acatggataaaccctgaaaacatcatgctaagttaaataagccagccacaaaagaaaaactattgtaagactccccttatatatctagaaaaggcaaattcatagagacagaaagtcaattagaatctatcagggtctgggtaaagtgggtaatggagagttattacttaacggtcacagaatttctgcatggggtgacagaaaagatttggaaacagatagtggttattgttgtgcaatggcgtcgtatgtgcaattaatcccactgaattgtacacttaaaatggttggaatggcatacttacattataatatattttaccacaat--aaaaaattttaagatatgcttataacatgtagaaactattacttaaggttttaagcaccctaaaatttcaagtgtttttaaatctagtagccattgcaaaaaaatgttatctcacaggtcagaaaatgaaggcagcagtacaaaggaatttgggggacaatgaaacagttctgtac---accactgtggtggatacatgactatgtatttgtcaagacctgcagaactagagttgaacaaacaaagatattatagataatgatagccaggtttgtatctgtgggaaaaataaattgcaaactggcaaaaggcaaattctagaataatccctgtgctaatggactcgagttagcaat---attatgaactaa----tatttaatttgtatgcagatatatatacagaaataaatatagacacatggagtggtatacacacaatcatttgctagctctataagctgagaagggatgtaagcaatgaccacctacttgcaatggggaatgctaggggccagattttgggttctaaacgccattc i aotNan1.NW_018493494v1 C 0 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e cebCap1.NW_016107439v1 7006174 6243 - 7304997 I e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48034380 2482 + 63241923 I e chlSab2.chr7 122939425 4467 - 135778131 I a score=3023816.000000 s hg38.chr4_KI270787v1_alt 106792 465 + 111943 tccgataaaaggaaccatgtttcttaaagaaacgggtgattcttgggctggaacatgggaaatagaagaggttcatctttcaacgacaga-ggtaagttagtgctgaaaagaaacatgcaaaaagatgagacagctcctaataatttgagcaatacaataaacaagaacagtaatgaatcgtaacccaaaaagtaaaataactatccataaatcaataaatatccatgag----tctatatacaacagaaagaaggaaagaggaggagggag--ggagagaggaagggaag--gagaggaagaaaagaagatagggagggaagagagaggaaagaa--------ggaaggaag-----gaaggaaggaaggaag----------------------------------------gaaggaaggaagcaaagaa-gggagggag----------------------------------------------------------------ggagggaggaagg-gattttccctaacagaataattccaattaatacatggagaagaaatgtggaaaatagaatgtca-ccgttagg s panTro5.chr4 119674019 449 - 194502333 tccaataaaatgaaccatgtttcttaaagaaacgggtgattcttgggctggaacatgggagatagaagaggttcatctttcaacgacaga-ggtaagttagtgctgaaaagaaacatgcaaaaagatgagacagctcctaataatttgagcaatacaataaacaagaacagtaatgaatcgtaacccaaaaagtaaaataactatctataaatcaataaatatccatgag----tctatatacaacagaaagaaggaaagaggaggagggag--ggagagaggaagggaag--gagaggaagaaaagaagatagggagggaagagagaggaaagaa--------ggaaggaag-----gaagcaaagaagggag--------------------------------------------------------gga-gagagggag----------------------------------------------------------------ggagggaggaagg-gattttccctaacagaataattccaattaatacatggagaagaaatgtggaaaatagaatgtca-ccgttagg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121087849 449 - 195804263 tccaataaaatgaaccatgtttcttaaagaaacgggtgattcttgggctggaacatgggagatagaagaggttcatctttcaacgacaga-ggtaagttagtgctgaaaagaaacatgcaaaaagatgagacagctcctaataatttgagcaatacaataaacaagaacagtaatgaatcgtaacccaaaaagtaaaataactatctataaatcaataaatatccatgag----tctatatacaacagaaagaaggaaagaggaggagggag--ggagagaggaagggaag--gagaggaagaaaagaagatagggagggaagagagaggaaagaa--------ggaaggaag-----gaagcaaagaagggag--------------------------------------------------------gga-gggagggag----------------------------------------------------------------ggagggaggaagg-gattttccctaacagaatagttccaattaatacatggagaagaaatgtggaaaatagaatgtca-ccgttagg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4516867 440 - 17550833 tccgataaaaggaaccatgtttcttaaagaaacgggtggttcttgggctggaacatgggaaatagaagaggttcatctttcaacgacaga-ggtaagttagtgctgaaaag----atgcaaaaagatgagacagctcctaataatttgagcaatacaataaacaagaacagtaatgaatcataacccaaaaagtaaaataactatccataaatcaataaatatccatgag----tctatatacaacagaaagaa-gaaagaggaggagggag--ggagagaggaagggaag--gagaggaagaaaagaagatagggagggaagagagaggaaagaa--------ggaaggaag-----gaag----gaagcaaa--------------------------------------------------------gaa-gggagggag----------------------------------------------------------------ggagggaggaagg-gattttccctgacagaataattccaattaatacatggagaagaaatgtggaaaatagaatgtca-ccgttagg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69389061 553 - 118206036 tccgataaaaggaaccatgtttcttaaagaaacgggtgattctt-------------gcaaatagaagaggttcatcttgcaacgacaga-ggtaagttagtgctgaaaagaaacatgcaaaaagatgagagaactcctaataatttgag-----caataaacaagaacagtaatgaattataacccaaaaagtaaaataactatccataaatcaataaatatccgtgag----tctatatacaacagaaagaaggaaagaggaggagggag--ggtgagaggaagggaaggagagaggaagaaaagaagatagggaaggaagagggaggaaggaa--------ggaaggaag-----gaaggaaggaagaaagaaagaagaaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagga-gggaggaaggaagaaagaaagaagaaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggagggaggaagg-gattttccctaacagaataattccaattaatacatggagaagaaatgtggaaaatagaatgtca-ccgttagg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111599692 449 - 190429646 tctgataaaaggaaccatgtttcttaaagaaacgggtgattcttaggcagggacacgggaaatagaagcagttcatcttggagcaacagagggtgacttagtgctgcaaagaaacatgcaaaaagatgagagagctcctaataatttgagcaatacaataaacaagaactgtaattaatggtaacccaaagagtaaaataactatccataaatcaataaatattcgtgag----tccatatacaacagaaagaaggaaagaggaggaaggag--gaagagaggaagggaaggagagaggaagaaaagaagatagggagggaagagggaggaaagaa--------agaaggaag--------ggaaggaagtaag--------------------------------------------------------gaa-ggaaggga-----------------------------------------------------------------ggagggaggaagg-gattttccctgacagaataattccaattaatacatggtgaagaaatgtggaaaacagaatgtcacccgttagg i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110768904 449 - 189454096 tctgataaaaggaaccatgtttcttaaagaaacgggtgattcttaggcagggacacgggaaatagaagcagttcatcttggagcaacagagggtgacttagtgctgcaaagaaacatgcaaaaagatgagagagctcctaataatttgagcaatacaataaacaagaactgtaattaatggtaacccaaagagtaaaataactatccataaatcaataAATATTCGTGAG----TCCATATACAACAgaaagaaggaaagaggaggaaggag--gaagagaggaagggaaggagagaggaagaaaagaagatagggagggaagagggaggaaagaa--------agaaggaag--------ggaaggaaggaag--------------------------------------------------------gaa-ggaagggag----------------------------------------------------------------ggagggaggaagg-gattttccctgacagaataattccaattaatacatggtgaagaaatgtggaaaacagaatgtca-ccgttagg i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13335977 457 + 26754465 tctgataaaaggaaccatgtttcttaaagaaacgggtgattcttaggcagggacacgggaaatagaagcagttcatcttggagcaacagagggtgacttagtgctgcaaagaaacatgcaaaaagatgagagagctcctaataatttgagcaatacaataaacaagaactgtaattaatggtaacccaaagagtaaaataactatccataaatcaataaatatttgtgag----tccatatacaacagaaagaaggaaagaggaggaaggag--gaagagaggaagggaaggagagaggaagaaaagaagatagggagggaagagggaggaaagaa--------agaaggaagggaaggaaggaaggaaggaag--------------------------------------------------------gaa-ggaagggag----------------------------------------------------------------ggagggaggaagg-gattttccctgacagaataattcaaattaatacatggtgaagaaatgtggaaaacagaatgtcg-ccgttaga i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4236793 449 - 5137665 tctgataaaagaaaccatgtttcttaaagaaatgggtgattcttaggctgggacacgggaaatagaagcagttcatcttggagcaacagagggtgacttagtgctgcaaagaaacatgcaaaaagatgagagagctcctaataatttgagcaatacaataaacaagaactgtaattgattgtaacccaaagagtaaaataactatccataaatcaataaatattcgtgag----tccatatacaacagaaagaaggaaagaggaggagggag--gaagagaggaagggaaggagagaggaagaaaagaagatagggagggaagagggaggaaagaa--------agaaggaag--------ggaaggaaagaag--------------------------------------------------------gaa-ggaagggag----------------------------------------------------------------ggagggaggaagg-gattttccctgacagaataattccaattaatacatggtgaagaaatgtggaaaacagaatgtca-ccgttagg i cerAty1.NW_012001307v1 C 0 C 0 s manLeu1.NW_012104388v1 2058763 449 + 2427316 tctgataaaaggaaccatgtttcttaaagaaacgggtgattcttaggctgggacacgggaaatagaagcagttcatcttggagcaacagagggtgacttagtgctgcaaagaaacatgcaaaaagatgagagagctcctaataatttgagcaatacaataaacaagaactgtaattgattgtaacccaaagagtaaaataactatccataaatcaataaatattcgtgag----tccatatacaacagaaagaaggaaagaggaggagggag--gaagagaggaagggaaggagagaggaagaaaagaagatagggagggaagagggaggaaagaa--------agaaggaag--------ggaaggaaagaag--------------------------------------------------------gaa-ggaagggag----------------------------------------------------------------ggagggaggaagg-gattttccctgacagaataattccaattaatacatggtgaagaaatgtggaaaacagaatgtca-ccgttacg i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1354089 449 + 1448899 tctgataaaaggaaccatgtttcttaaagaaacgggtgattcttaggctgggacatgggaaatagaagcagttcatcttgcagcgacagaaggtgacttagtgctgtaaagaaacatgcaaaaagatgagagtgctcctaataatttgagcaatacaatgaacaagaaatgtaattaattgtaacccaaagagtaaaataactatccataaatcagtaaatattcgtgag----tccatatacaacagaaagaaggaaagaggaggagggag--gaagagaggaagggaaggagagaggaagaaaagaagatagggagggaagagggaggaaagaa--------agaaggaag--------ggaaggaaagaag--------------------------------------------------------gaa-ggaagggag----------------------------------------------------------------ggagggaggaagg-gattttccctgacagaataatttcaattaatacatggtgaagaaatgtggaaaacagaatgtca-ccgttagg i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8227348 466 - 15139346 tccgataaaaggaaccatgtttcttaaagaaatggttgattcttgggctgggacatgggaattcgaagaggtgcatcttgccatgacagagcgtaagttagtgctaaaaagaaaaatgcaaaaagatgggagaactcctaataatttcagcaatacaataaataagaacagtaatgaattgaaacccaaagagtaaaataattatctgtaaatcaataaatatccatgagtccatccatatacaacagaaggaaggaaagagga-gagggagagggagagagtaagggaaggagagaggaagaaaagaagatagggcaggaaaagtaaggaaggaaggaaagacggaaggaag-----gaagggagggagggac--------------------------------------------------------gga-gggagggag----------------------------------------------------------------ggagggaaggtgacgattttccctaacagagaaattccaattaatacatggagaaggaatgtggaaaatagaatgtca-ccattagg i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7012417 456 - 7304997 tccaataaaaggaaccatgtttcttaaagaaatggctgattcttgggctgggacatgggaattggaagaggttcatcttgccatgacagagtataagttagtactaaaaagaaaaatgcaaaaagatgggagaactcctaataatttgagcaatacaataaataagaacagtaatgaattgtaacccaaagagtaaaa----tatctgcaaatcaataaatatccattagtccatccatatacaacagaaggaaggaaagaggaggagggagaataagagaggaagggaaggagagaggaagaaaagaagatagggagggaaaaggaaggaaggaa--------gggagggag-----ggagggagggagggac--------------------------------------------------------ggaggggagggac----------------------------------------------------------------ggagggaaggtgacgattttccctaacagaaaaattccaattaatacatggagaaggaatgtggaaaatagaatgtca-ccattagg i cebCap1.NW_016107439v1 I 6243 C 0 s aotNan1.NW_018493494v1 9430909 438 - 11631747 tccaataaaatgaaccatgtttcttaaagaaatggccaattcttgggctgggacacgggaattggaagaggttcatattgccatgacaaagtgtaagttagtgctaaaaa-aaaaatgcaaaaagatgggagaactcctaataatttgagcaatacaataaataagaacagtaatgaattgtaacccaaagagtaaaataattatctgtaaatcaataaatatccatgagtccatccatatacaacagaaggaaggaaagaggaggagggagagggagagaggaagggaaagagagaggaagaaaagaagatagagagggaagaggaaggaaggga--------gggaggga----------------------------------------------------------------------------------gggagggag----------------------------------------------------------------ggaggaaaggtgacgatcttccctaacagaaaaattccaattaatacatggagaaggaatgtggaaaatagaatgtca-ccattagg i aotNan1.NW_018493494v1 C 0 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48034380 2482 + 63241923 I e chlSab2.chr7 122939425 4467 - 135778131 I a score=2232793.000000 s hg38.chr4_KI270787v1_alt 107257 267 + 111943 gtgccacagttataactgcagcaggcaagacccactgacaaatgctaaaattagtgagcaaaactttaaagaggatcagggcattcacattgcttcaaaatatctgccatcaaatatttattaataactgtggtag---------ttttaac--acgtccacaaatccttaaacactctccctccaggaagtgaagcttaatacccctggattggaca---taactccag----ggtctagacttcgtaactcacttccaaaggacaaagtatggaaaggggaaa s panTro5.chr4 119674468 267 - 194502333 gtgccacagtcataactgcagcaggcaagacccactgacaaatgctaaaattagtgagcaaaactttaaagaggatcagggcattcacattgcttcaaaatatctgccatcaaatatttattaataactgtggtag---------ttttaac--acgtctacaaatccttaaacactctccctccaggaagtgaagcttaatacccctggattggact---taactccag----ggtctggacttcgtaactcacttccaaaggacaaagtatggaaaggggaaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121088298 267 - 195804263 gtgccacagttataactgcagcaggcaagacccactgacaaatgctaaaattagtgagcaaaactttaaagaggatcagggcattcacgttgcttcaaaatatctgccatcaaatatttattaataactgtggtag---------ttttaac--acgtctacaaatccttaaacactctccctccaggaagtgaagcttaatacccctggattggact---taactccag----ggtctggacttcgtaactcacttccaaaggacaaagtatggaaaggggaaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4517307 267 - 17550833 gtgccacagttataactgcagcaggcaagacccactgacaaatgctaaaattagtgagcaaaactttaaagaggatcagggcattcacgttgcttcaaaatatctgccatcaaatatatattaataactgtggtag---------ttttaac--acgtctacaaatccttaaacactctccctccaggaagtgaagcttaatacccctggattggact---taactccag----ggcctggacttcgtaactcacttccaaaggacaaagtatggaaaggggaaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69389614 268 - 118206036 gtgccacagttataactgcagcaggcaagacccactgacaaacactaaaattagtgagcaaaactttaaagaggatcagggcattcacgttgcttcaaaatatctgccatcaaatatttgttaataactgtggtag---------ttttaac--acgtgtacaaatccttaaaca--ctccctccaggaattgaagcttaatacccctggattggacttaataattccag----ggtctggacttcgtaactcacttccaaagcacaaagtatggaaaggggaaa i nomLeu3.chr9 C 0 I 24 s rheMac8.chr5 111600141 269 - 190429646 gtgccacagttataactgcagcaggcaagacccactgacaaatgctaaaattagtgagcaacactttaaagagaatcagggcattcatgttgcttcaaaatatctgccatcaaatatttattaataactgtggtag----------tttaac--atgtctacaaatccttaaacactctccctccaggaagtgaagcttaatacccctggattggacttaataactccag----ggtctggacttcataactcacttccaaaggataaagtatggaaagtggaaa i rheMac8.chr5 C 0 I 24 s macFas5.chr5 110769353 269 - 189454096 gtgccacagttataactgcagcaggcaagacccactgacaaatgctaaaattagtgagcaacactttaaagagaatcagggcattcatgttgcttcaaaatatctgccatcaaatatttattaataactgtggtag----------tttaac--atgtctacaaatccttaaacactctccctccaggaagtgaagcttaatacccctggattggacttaataactccag----ggtctggacttcataactcacttccaaaggataaagtatggaaagtggaaa i macFas5.chr5 C 0 I 24 s macNem1.NW_012012466v1 13336434 269 + 26754465 gtgccacagttataactgcagcaggcaagacccactgacaaatgctaaaattagtgagcaacactttaaagagaatcagggcattcatgttgcttcaaaatatctgccatcaaatatttattaataactgtggtag----------tttaac--atgtctacaaatccttaaacactctccctccaggaagtgaagcttaatacccctggattggacttaataactccag----ggtctggacttcataactcacttccaaaggataaagtatggaaagcggaaa i macNem1.NW_012012466v1 C 0 I 24 s cerAty1.NW_012001307v1 4237242 269 - 5137665 gtgccacagttataactgcagcaggcaagacccactgacaaatgctaaaattagtgagcaacactttaaagagaatcagggcattcatgttgcttcaaaatatctgccatcaaatatttattaataactgtggtag----------tttaac--atgtctacaaacccttaaacactctccctccaggaagtgaagcttaatacccctggattggacttaataactccag----ggtctggacttcataactcacttccaaaggacaaagtatggaaagcggaaa i cerAty1.NW_012001307v1 C 0 I 24 s manLeu1.NW_012104388v1 2059212 269 + 2427316 gtgccacagttataactgcagcaggcaagacccactgacaaatgctaaaattagtgagcaacactttaaagagaatcagggcattcatgttgcttcaaaatatctgccatcaaatatttattaataactgtggtag----------tttaac--atgtctacaaatccttaaacactctccctccaggaagtgaagcttaatacccctggattggacttaataactccag----ggtctggacttcataactcacttccaaaggacaaagtatggaaagcggaaa i manLeu1.NW_012104388v1 C 0 I 24 s colAng1.NW_012119221v1 1354538 273 + 1448899 gtgccacagttataactgcagcaggcaagacccactgacaaatgctaaaattagtgagcaaaactttaaagagaatcagggcattcatgttgcttcaacatgtctgccatcaaatatttattaataactgtggtag----------tttaac--atgtctataaatccttaaacactctccctccaggaagtgaagtttaatacccctggattgaacctaataacgccagggtcggtctggacttcataactaacttccaaaggacaaagtatggaaagcggaaa i colAng1.NW_012119221v1 C 0 I 24 s saiBol1.JH378162 8227814 263 - 15139346 gtggcacagttataac--ttgcaggcaagacccactgacaaatgctaaaatt----agcaaaactttagagaggagcagggcattcacactgcttcaaaatatctgccatcaaatatttattagtaactgtggtag--------tttttaac--atgactataaatcctttaaca--ctccctccaggaagtgaagcttaatacccctggattggacttagtaactccag----agtctgggcttagtaattcacttctaaaggacaaagtatggaaaggcgaaa i saiBol1.JH378162 C 0 I 24 s cebCap1.NW_016107439v1 7012873 270 - 7304997 gtggcacagttataacggttgcaggcaagacccactgacaaatgctaaaattagtgagcaaaactttaaagaggagcagggcactcacattgcttcaaaatatctgccctcaaatatttattaataactgtggtag---------ttttaac--atgactacaaatccttaaacactctccctccaggaagtgaagcttaatatccctggattggacttaataactccag----ggtctgggcttagtaagtcacttctaaaggacaaagtatggaaaggggaaa i cebCap1.NW_016107439v1 C 0 I 24 s aotNan1.NW_018493494v1 9431347 270 - 11631747 gtgccacagttataactgtcacaggcaagacccactgacaaatgctaaaattagtgagcaaaaccttaaagaggagcagggcattcacattgcttcaaaatatctgccatcaaatatttattaataactgtggtag---------ttttaac--acgactacaaatccttaaacactctccctccaggaaatgaagcttaatacccctggattggacttaataactccag----ggtctgggcttagtaattcacttctaaaggacaaagtatggaaaggggaaa i aotNan1.NW_018493494v1 C 0 I 24 s canFam3.chr13 48036862 279 + 63241923 GTaccaaagtaataattgctacaggcaacatccactgatgaatactaaaatttgtaagtgaaactttagagagaaacagggtatccacatggcctcataatatctctcatcaaatatttattaataactgtgataactgtggtgcttttaacatatgtctccaatttcttaaata--ctccctctaggagatgggtcttagatcccctagactggacttaataactccag---tggtctagacttggcaacttgc-tccaaagaaccaagtatggaaagagaaaa i canFam3.chr13 I 2482 I 9 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e calJac3.chr3 53053760 5346 - 190850796 I e chlSab2.chr7 122939425 4467 - 135778131 I a score=6792359.000000 s hg38.chr4_KI270787v1_alt 107524 723 + 111943 tggcag---------------gcagtaccttaaccaagtgatcaagcccaacatcactagtaataacacatagtgacattcagcacccaaagtccataacctcagtctaatcatgagaaaacatcagacaaaaccaaactgaaagacgctctacaaaatatccaaccactgctcttctaaagtgtcaaggtcatgaatgacaaagaaaaactgaggaactgtcatagattgaaggagattaaggaggcatgacaactaaaggccgtgcagtatcc-----------taacctgaatcctggaacag-gagaaagacatgagtggaaatact---------ggggaaatctaaatagtctgtaatttagtcaa------tttgttgagctcatcttaatttcttaattttgattattgtaccatggctatgtgagatattaacatt------atgggaagccaggtaaaaggtatatggggactgtctgtactatctttgcaagtcttctgtaagcctaaaattatcaaaataaagagtttaAAA-TTTGTTTAGCCTCAGCTGAATACAAGGG-TTATACTCAGCAACTTGGAGTGGAAGGGTTTCAAACCCTGGTGACTGAAGTTGAAAATTAAAACAACTCAGCAGTAACCACTTACTCCTTATTACCACTCACCAGGGTAATTT--GTGTTCAAGTTTCCCAAACTAAAGTCTACCAGGAAATTGGCTAGGGGAGTGTTCTCGGTTGTTGCTCTGCCAGCTGGCCCTATTTC s panTro5.chr4 119674735 723 - 194502333 tggcag---------------gcagtaccttaaccaagtgatcaagcccaacatcactagtaataacacatagtgacattcagcacccaaagtccataacctcagtctaataatgagaaaacatcagacaaaaccaaactgaaagacgctctacaaaatatccaaccactgctcttctaaagtgtcaaggccatgaatgacaaagaaaaactgaggaactgtcatagattgaagtaaattaaggaggcatgacaactaaaggccgtgcagtatcc-----------taacctgaatcctggaacag-gagaaagacatgagtggaaatact---------ggggaaatctaaatagtctgtaatttagtcaa------tttgttgagctcatcttaatttcttaattttgattattgtaccgtggctatgtgagatattaacatt------atgggaagccaggtaaaaggtatatggggactgtctgtactatctttgcaagtcttctgtaagcctaaaattatcaaaataaagagtttaAAA-TTTGTTTAGCCTCAGCTGAATACAAGGG-TTATACTCAGCAACTTGGAGTGGAAGGGTTTCAAACCCTGGTGAGTGAAGTTGAAAATTAAAACAACTCAGCAGTAACCACTTACTCCTTATTACTACTCACCAGGGTAATTT--GTGTTCAAGTTTCCCAAACTAAAGTCTACCAGGAAATTGGCTAGGGGAGTGTTCTCGGTTGTTGCTCTGCCAGCTGGCCCTATTTC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121088565 723 - 195804263 tggcag---------------gcagtaccttaaccaagtgatcaagcccaacatcactagtaataacacatagtgacattcagcacccaaagtccataacctcagtctaatcatgagaaaacatcagacaaaaccaaactgaaagacgctctacaaaatatccaaccactgctcttctaaagtgtcaaggccatgaatgacaaagaaaaactgaggaactgtcatagattggagtagattaaggaggcatgacaactaaaggccgtgcagtatcc-----------taacctgaatcctggaacag-gagaaagacatgagtggaaatact---------ggggaaatctaaatagtctgtaatttagtcaa------tttgttgagctcatcttaatttcttaattttgattattgtaccgtggctatgtgagatattaacatt------atgggaagccaggtaaaaggtatatggggactgtctgtactatctttgcaagtcttctgtaagcctaaaattatcaaaataaagagtttaAAA-TTTGTTTAGCCTCAGCTGAATACAAGGG-TCATACTCAGCAACTTGGAGTGGAAGGGTTTCAAACCCTGGTGAGTGAAGTTGAAAATTAAAACAACTCAGCAGTAACCACTTACTCCTTATTACTACTCACCAGGGTAATTT--GTGTTCAAGTTTCCCAAACTAAAGTCTACCAGGAAATTGGCTAGGGGAGTGTTCTCGGTTGTTGCTCTGCCAGCTGGCCCTATTTC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4517574 704 - 17550833 tggcag---------------gcagtaccttaaccaagtgatcaagcccaacatcactagtaataacacatagtgacattcagcacccaaagtccataacctcagtctaatcatgagaaaacatcagacaaaaccaaactgaaagacgctctacaaaatatccaaccactgctcttctaaagtgtcaaggtcatgaatgacaaagaaaaactgaggaactgtcatagattgaaggagattaagga-------------------gtgcagtatcc-----------taacctgaatcctggaacag-gagaaagacatgagcggaaatact---------ggggaaatctaaatagtctgtaatttagtcca------tttgttgagctcatcttaatttcttaattttgattattgtaccgtggctatgtgagatgttaacatt------atgggaagccaggtaaaaggtatatggggactgtctgtactatctttgcaagtcttctgtaagcctaaaattatcaaaataaagagtttaAAA-TTTGTTTAGCCTCAGCTGAATACAAGGG-TTATACTCAGCAACTTGGAGTGGAAGGGTTTCAAACCCTGGTGACTGAAGTTGAAAATTAAAACAACTCAGCAGTAACCACTTACTCCTTATTACTACTCACCAGGGTAATTT--GTGTTCAAGTTTCCCAAACTAAAGTCTACCAGGAAATTGGCTAGGGGAGTGTTCTCGGTTGTTGCTCTGCCAGCTGGCCCTATTTC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69389906 718 - 118206036 tggcag---------------acagtaccttaaccaagtgatcaagccccacatcactagtaataacacataatgacattcagcacccaaagtccataacctcaatctaatcatgagaaaacatcagaca-----aaactgaaagacgctctacaaaacatctaaccactgctcttctaaagtgtcatggtcatgaatgacaaagaaaaactgaggaactgtcatggattgaaggagattaaggaggcatgacaactaaaggcagtgcagtatcc-----------taacctgaatcctagaacag-gagaaagacatgagtggaaatact---------ggggaaatctaaacagtttgtaatttagtcaa------tttgttgagctcatcttaatttcttaattttgattattgtaccatggctatgtgagatattaacatt------atgggaagccaggtaaaaggtatatagggactgtctgtactatctttgcaagtcttctgtaagcctaaaattatcaaaataaagagtttaAAA-TTTGTTTAGCCTCAGCTGAATACAAGGG-CTATACTCAGCAACTTGAAGTGGAAGGGTTTCAAACCCTGGTGACTGAAGTTGAAAATTAAAACAACTCATCAGTAACCACTTACTCCTTATTACTACTCACCAGGGTCAGTT--GTGTCCAAGTTTCCCAAACTAAAATCTACCAGGAAATTGGCTAGGGGAGCATTCTCGGTTGTTGCTCTGCAAGCTGGCCCTATTTC i nomLeu3.chr9 I 24 C 0 s rheMac8.chr5 111600434 729 - 190429646 tggcag---------------atagtaccttaaccaagtgatcaagcccagcatcaccagtaataacacatggtgacattcagcacccaaagtcaataacctcagtctaatcatgaacaaacatcagacaaaaccaaactgaaagacgctctacaaaacatctaaccactgctcttctaaagtgtcaaggtcatgaatgacaaagaaaaactgataaactgtcacagactgaaggagattaaagaggcatgacaactaaaggcagtgcagtatcc-----------taacctgaatcctggaacag-gagaaagacatgtgtggaaatact---------ggggaaatctaaatagtctataacttagtcaatagtattttgttgagctaatcttaatttcttaattttgattattgtaccatggctatgtgagatattaacatt------atgggaagccaggtaaaaggtatatggggactgtctgtactatctttgcaagtcttctgtaagcctaaaattatcaaaataaagagtttaAAA-TTTGTTTAGCCTCAGCTGAATACAAGGG-TTATACTCAGCAACTTGAAGTAGAAGGGTTTCAAACCCTGGTGACTGAAGTTGAAAATTAAAACAACTCAGCAGTAACCACTTACTCCTTATTACTACTCACCAGGGTAATTT--GTGTCTAAGTTTCCCAAACTAAAATCTACCAGGAAATTGGCTAGGGGAGTGTTCTCGGTTGTTGCTCTGCAGGCTGGCCCTATTTC i rheMac8.chr5 I 24 C 0 s macFas5.chr5 110769646 729 - 189454096 tggcag---------------atagtaccttaaccaagtgatcaagcccagcatcaccagtaataacacatggtgacattcagcacccaaagtcaataacctcagtctaatcatgaacaaacatcagacaaaaccaaactgaaagacgctctacaaaacatctaaccactgctcttctaaagtgtcaaggtcatgaatgacaaagaaaaactgataaactgtcacagactgaaggagattaaagaggcatgacaactaaaggcagtgcagtatcc-----------taacctgaatcctggaacag-gagaaagacatgtgtggaaatact---------ggggaaatctaaatagtctataacttagtcaatagtattttgttgagctaatcttaatttcttaattttgattattgtaccatggctatgtgagatattaacatt------atgggaagccaggtaaaaggtatatggggactgtctgtactatctttgcaagtcttctgtaagcctaaaattatcaaaataaagagtttaAAA-TTTGTTTAGCCTCAGCTGAATACAAGGG-TTATACTCAGCAACTTGAAGTAGAAGGGTTTCAAACCCTGGTGACTGAAGTTGAAAATTAAAACAACTCAGCAGTAACCACTTACTCCTTATTACTACTCACCAGGGTAATTT--GTGTCTAAGTTTCCCAAACTAAAATCTACCAGGAAATTGGCTAGGGGAGCGTTCTCGGTTGTTGCTCTGCAGGCTGGCCCTATTTC i macFas5.chr5 I 24 C 0 s macNem1.NW_012012466v1 13336727 729 + 26754465 tggcag---------------atagtaccttaaccaagtgatcaagcccagcatcaccagtaataacacatggtgacattcagcacccaaagtcaataacctcagtctaatcatgaacaaacatcagacaaaaccaaactgaaagacgctctacaaaacatataaccactgctcttctaaagtgtcaaggtcatgaatgacaaagaaaaactgataaactgtcacagactgaaggagattaaagaggcatgacaactaaaggcagtgcagtatcc-----------taacctgaatcctggaacag-gagaaagacatgtgtggaaatact---------ggggaaatctaaatagtctataacttagtcaatagtattttgttgagctaatcttaatttcttaattttgattattgtaccatggctatgtgagatattaacatt------atgggaagccaggtaaaaggtatatggggactgtctgtactatctttgcaagtcttctgtaagcctaaaattatcaaaataaagagtttaAAA-TTTGTTTAGCCTCAGCTGAATACAAGGG-TTATACTCAGCAACTTGAAGTAGAAGGGTTTCAAACCCTGGTGACTGAAGTTGAAAATTAAAACAACTCAGCAGTAACCACTTACTCCTTATTACTACTCACCAGGGTAATTT--GTGTCTAAGTTTCCCAAACTAAAATCTACCAGGAAATTGGCTAGGGGAGTGTTCTCGGTTGTTGCTCTGCAGGCTGGCCCTATTTC i macNem1.NW_012012466v1 I 24 C 0 s cerAty1.NW_012001307v1 4237535 729 - 5137665 tggcag---------------atagtaccttaaccaagtgatcaagcccagcatcaccagtaataacacatagtgacattcagcacccaaagtcaataacctcagtctaatcatgaaaaaacatcagacaaaaccaaactgaaagacgttctacaaaacatctaaccactgctcttctaaagtgtcaaggtcatgaatgacaaagaaaaactgatgaactgtcacagactgaaggagattaaagaggcatgacaactaaaggcagtgcagtatcc-----------taacctgaatcctggaacag-gagaaagacatctgtggaaatact---------ggggaaatctaaatagtctataacttagtcaatagtattttgttgagctaatcttaatttcttaattttgattattgtaccatggctatgtgagatattaacatt------atgggaagccaggtaaaaggtatatggggactgtctgtactatctttgcaagtcttctgtaagcctaaaattatcaaaataaagagtttaAAA-TTTGTTTAGCCTCAGCTGAATGTAAGGG-TTATACTCAGCAACTTGAAGTAGAAGGGTTTCAAACCCTGGTGACTGAAGTTGAAAATTAAAACAACTCAGCAGTAACCACTTACTCCTTATTACTACTCACCAGGGTAATTT--GTGTCCAAGTTTCCCAAACTAAAATCTACCAGGAAATTGGCTAGGGGAGCGTTCTCGGTTGTTGCTCTGCAGGCTGGCCCTATTTC i cerAty1.NW_012001307v1 I 24 C 0 s chlSab2.chr7 122943892 740 - 135778131 tggcag---------------atagtaccttaaccaagtgatcaagcccagcatcaccagtaataacacatagtgacattcagcacccaaagtcaataacctcagtctaatcatgaaaaaacatcagacaaaaccaaactgaaagatgctctacaaaacatctaaccactgctcttctaaagtgtcaaggtcatgaatgacaaagaaaaactgataaactgtcacagactgaaggagattaaagaggcatgacaactaaaggcagtgcagtatcctaacctgaatgtaacctgaatcctggaacag-gagaaagacatgtgtggaaatact---------ggggaaatctaaatagtctataacttagtcaatagtattttgttgagctaatcttaatttcttaattttgattattgtaccatggctatgtgagatattaacatt------atgggaagccagataaaaggtatatggggactgtctgtactatctttgcaagtcttctgtaagcctaaaattatcaaaataaagagtttaAAA-TTTGTTTAGCCTCAGCTGAATATAAGGG-TTATACTCAGCAACTTGAAGTAGAATGGTTTCAAACCCTGGTGACTGAAGTTGAAAATTAAAACAACTCAGCAGTAACCACTTACTCCTTATTACTACTCACCAGGGTAATTT--GTGTCCAAGTTTCCCAAACTAAAATCTACCAGGAAATTGACTAGGGGAGCGTTCTCGGTTGTTGCTCTGCAGGCTGGCCCTATTTC i chlSab2.chr7 I 4467 C 0 s manLeu1.NW_012104388v1 2059505 729 + 2427316 tggcag---------------atagtaccttaaccaagtgatcaagcccagcatcaccggtaataacacatagtaacattcagcacccaaagtcaataacctcagtctaatcatgaaaaaacatcagacaaaaccaaactgaaagacgctctacaaaacatctaaccactgctcttctaaagtgtcaaggtcatgaatgacaaagaaaaactgatgaactgtcacagactgaaggagattaaagaggcatgacagctaaaggcagtgcaatatcc-----------taacctgaatcctgggacag-gagaaagacatgggtggaaatact---------ggggaaatctaaatagtctataacttagtcaatagtattttgttgagctaatcttaatttcttaattttgattattgtaccatggctatgtgagatattaacatt------atgggaagccaggtaaaaggtatatggggactgtctgtactatctttgcaagtcttctgtaagcctaaaattatcaaaataaagagtttaAAA-TTTGTTTAGCCTCAGCTGAATATAAGGG-TTATACTCAGCAACTTGAAGTAGAAGGGTTTCAAACCCTGGTGACTGAAGTTGAAAATTAAAACAACTCAGCAGTAACCACTTACTCCTTATTACTACTCACCAGGGTAATTT--GTGTCCAAGTTTCCCAAACTAAAATCTACCAGGAAATTGGCTAGGGGAGCGTTCTCGGTTGTTGCTCTGCAGGCTGGCCCTGTTTC i manLeu1.NW_012104388v1 I 24 C 0 s colAng1.NW_012119221v1 1354835 728 + 1448899 tggcag---------------acagtaccttaaccaagcgatcaagcccagcatcaccagtaataacacatagtgacattcagcacccaaagtcaataacctcagtctaatcatgagaaaacatcagacaaaaccaaactgaaagacactctacaaaacatctaaccactgctcttctaaagtgtcaaggtcatgaatgacaaagaaaaactgatgaactgtcacagactgaaggagattaaagaggcatgacaactaaaggcagtgcagtatcc-----------taacctgaatcctggaacag-gagaaagacatgtgtagaaatact---------ggggaaatctaaatagtcta-aatttagtcaatagtattttgttgagctaatcttaatttcttaattttgattactgtaccatggctatgtgagatattaacatt------atgggaagccaggtaaaaggtatatggggactgtctgtactatctttgcaagtcttctgtaagcctaaaattatcaaaataaagagtttaAAA-TTTGTTTAGCCTCAGCTGAATACAAGGG-TTATACTCAGCAACTTGAAGTAGAAGGGTTTCAAACCCTGGTGACTGAAGTTGAAAATTAAAACAACTCAGCAGTAACCACTTACTCCTTATTACTATTCACCAGGGTAATTT--GTGTCCAACTTTCCCAAACTAAAATCTACCAGGAAATTGGCTAGGGGAGCGTTCTTGGTTGTTGCTGTGCAGGCTGGCCCTGTTTC i colAng1.NW_012119221v1 I 24 C 0 s saiBol1.JH378162 8228101 726 - 15139346 tggcag---------------acagtacctaaaccaagtgatcaatgtcaacgtcactagtgataacaca--gtgactttcagtacccaaagtccataaccttagtctaatcataagaaaacaccagacaaaaccaaaccgaaggacactctacaaaacatccaaccactactcttctaaagtgtcaaggtaatgaatgacaaagaaaaactgatgaactgtcatagaatgaaggggactaaagagacatgatgactaaaggcagtgtagtatcc-----------taacctgaatcctggaacag-aaaaaagacgtcagtggtaatacg---------ggggaaatctaaatagtctgtaatttagtcaatagta-tttgttgagccaatctgaatttcttaattttgattattgtaccatggctatatgagatattaacatt------attggaaaccagataaaaggtatatggggactgtctatactatctttccaagtc-tctgtaaacctaaaattatcaaaataaagagtttataa--ttttttaGCCTCAGCTGAATACAAGGG-TTATACTCAACAACTTGAAGTGGAAGGGTTTCAAACACTGGTGACCAAAGTTGAAAATTAAAGCAACTCAGCAGTAACCACTTACTCCTTATTACTACTCACCAGGGTAATTTGAGTGTCCAAGTTTCCCAAACTAAAATCTACCAGGAAATTGACCAGGTGAGATTTATCAGTTGTTGCTCTGCAAGCTGGCCCTATTTC i saiBol1.JH378162 I 24 I 53 s cebCap1.NW_016107439v1 7013167 727 - 7304997 tggcag---------------acagtacctaaaccaagtgatcaatgccaacatcactagtaataacaca--gtgactttcagtacccaaagtccataaccttagtctaatcataagaaaacatcagacaaaaccaaaccgaaggacactctacaaaacatctaactactactcttctaaagtgtcaaggtaatgaatgacaaagaaaagctgatgaactgtcatagaacgaaggggactaaagagacatgacgactaaaggcagtgtagaatcc-----------taacctgaatcctggaacagaaaaaaagacatcagtggtaatac----------ggggaaatctaaatagtctgtaatttagtcaatagta-tttgttgagccaatcttaatttcttaattttgattattgtaccatggctatatgagatattaacttt------attggaagctagataaaaggtatatggggactgtctgtactatctttccaagtc-tctgtaagcctaaaattatcaaactaaagagtttatAA-TTTTTTTAGCCTCAGCTGAATACAAGGG-TTATACTCAGAAACTTGAAGTGGAAAGGTTTCAAACCCTGGTAACCAAAGTTGAAAATTAAAACAACTCAGCAGTAACCACTTACTCCTTATTACTACTCTCCAGGGTAATTTGAGTGTCCAAGTTTCCCAAACTAAAATCTACCAAGAAATTGGCCAGGCGAGATTTCTCAGTCATTGCTCTGCAAGCTGGCCCTATttc i cebCap1.NW_016107439v1 I 24 I 367 s aotNan1.NW_018493494v1 9431641 727 - 11631747 tggcag---------------acagtacctaaaccaagtgatcaatgccaacatcactagtattaacaca--gtgactttcagtacccaaagtccataaccttagtctaatcataagaaaacatcagacaaaaccaaaccaaaggacactctacaaaacatctaaccactattcttctaaagtgtcaaggtaatgaatgacatagaaaaactgatgacctgtcatagaatgaaggagactaaagagacaggacaactaaaggcagtgtagtatgc-----------taacctgaatcctggaacag-aaaaaaggcatcagtggtaataca---------ggggaaatctaaatagtctgtaatttagtcaacagta-tttgttgagccaatcttaatttcttaattttgattattgtaccatggctatatgagatattaacatt------attggaagccagataaaaggtatatggggactgtctgtactatctttccaagtc-tctgtaagcctaaaattatcaaaataaagagtttatAA-TTTTTTTAGCCTCAACTGAATACAAGGG-TTATACTCAGCAACTTTAAGTGGAAGGGTTTCAAACCCTGGTGACCAAAGTTGAAAATTAAAACAACTCAGCAGTAACCACTTACTCCTTATTACTACTCACCAGGGTGATTTGAGTATCCAAGTTTCCTAAACTAAGATCTACCAGGAAATTGGCCAGGGGAGCTTTCTCGGTTGCTGCTCTGCAAGCTGGCCCTATTTC i aotNan1.NW_018493494v1 I 24 I 371 s canFam3.chr13 48037150 725 + 63241923 ttacagtggagatacctggccacacaacctataccaagtgataaaggctaagatcaccattaataagatat--tgatttcatttaccccaaatctgcaacctcagtcttaccatgtaaaaaaa--aagcaaacccaacctgaagaacacactacaatacatctaaccagtactcttcaaaagta--------attaaagacaaaaaaaatctcaggagctgtcacagattgaaggagaataaggagatgtgacaactataggcagtgtggtattc-----------tgacctgaattgtggaacag-aaaaaaagcct-----gaaatacctctgaaataacagaaatacaaatagtctgtagttaattgca------tttgttgaaccaaaattaatttcctagttttgatcactgtaccatgactacatgaaatgttaacatgtagttaacaggtagctgggtagagagtatataggaactatcagtagcatctctaaaactcttctgtaaatctaaaattatcaaaataaaaagtttaATTTTTTTTTTAGCTTCAGGTAAAACTACGGGCTTACACTCAGT-ACTTGAAATCAGTGGGTCTCACTCCCAGATGACTTAAACTAAAAATAAAAACATATCGGTATTAACCA----------GTTGTAACTCACCTGTGCAGTTTGAACATATAAGTTGCCCAAACTAAAATCTCCCAGGAATTTGGTTAGGTTATCTGTCTCA-TTGTTGCTCTAGGAGATGGCCCTAC--- i canFam3.chr13 I 9 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e calJac3.chr3 53053760 5346 - 190850796 I a score=39899.000000 s hg38.chr4_KI270787v1_alt 108247 6 + 111943 AATCCA s panTro5.chr4 119675458 6 - 194502333 AATCCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121089288 6 - 195804263 AATCCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4518278 6 - 17550833 AATCCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69390624 6 - 118206036 AATCCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111601163 6 - 190429646 AATCCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110770375 6 - 189454096 AATCCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13337456 6 + 26754465 AATCCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4238264 6 - 5137665 AATCCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122944632 6 - 135778131 AATCCA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2060234 6 + 2427316 AATCCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1355563 6 + 1448899 AATCCA i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8228880 6 - 15139346 cgtcca i saiBol1.JH378162 I 53 I 40 s canFam3.chr13 48037875 3 + 63241923 ---ACA i canFam3.chr13 C 0 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e aotNan1.NW_018493494v1 9432368 371 - 11631747 I e cebCap1.NW_016107439v1 7013894 367 - 7304997 I e calJac3.chr3 53053760 5346 - 190850796 I a score=1723240.000000 s hg38.chr4_KI270787v1_alt 108253 207 + 111943 CCCAGCTGCAGGCCCTGCAGTGGACTAGGGAGATTCAGCTTCCAGTTCAACCCCTTTCTCCTGCTATCC-CTGCATCATGGATGTAGTTTAGCCCTGGTGGGTAATTTGGATGTTTGGGATGGCTAAGCTGAAACAAA-ACAGATGG------ACAGATGGAAATTGGTGATAATTGGTACTTTGTAGAAAGGTGAGAAAAGCATAAAGAATGTA s panTro5.chr4 119675464 207 - 194502333 CCCAGCTGCAGGCCCTGCAGTAGACTAGGGAGATTCAGCTTCCAGTTCAACCCCTTTCTCCTGCTATCC-CTGCATCATGGATGTAGTTTAGCCCTGGTGGGTAATTTGGATGTTTGGGATGGCTAAGCTGAAACAAA-ACAGATGG------ACAGATGGAAATTGGTGATAATTGGTACTTTGTAGAAAGGTGAGAAAAGCATAAAGAATGTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121089294 207 - 195804263 CCCAGCTGCAGGCCCTGCAGTAGACTAGGGAGATTCAGCTTCCAGTTCAACCCCTTTCTCCTGCTATCC-CTGCATCATGGATGTAGTTTAGCCCTGGTGGGTAATTTGGATGTTTGGGATGGCTAAGCTGAAACAAA-ACAGATGG------ACAGATGGAAATTGGTGATAATTGGTACTTTGTAGAAAGGTGAGAAAAGCATAAAGAATGTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4518284 207 - 17550833 CCCAGCTGCAGGCCCTGCAGTGGACTAGGGAGATTCAGCTTCCAATTCAACCCCTTTCTCCTGCTATCC-CTGCATCATGGACGTAGTTTAGCCCTGGTGGGTAATTTGGATGTTTGGGATGGCTAAGCTGAAACAAA-ACAGATGG------ACAGATGGAAATTGGTGATAATCGGTACTTTGTAGAAAGGTGAGAAAAGCATAAAGAATGTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69390630 207 - 118206036 CCCAGCTGCAGGCCCTGCAGTGGACTAGGGAGATTCAGCTTCCAGTTCAACCCCTTTCTCCTGTTATCC-CTGCATCATGGCTGTAGTTTAGCCCTGGTGGGTAATTTGGATGTTGGGGATGGCTAAGCTGAAACAAA-ACAGATGG------ACAGATGAAAATTGGTGATGATTGGTACTTTGTAGAAAGGTGAGAAAAGCATGAAGAATGTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111601169 199 - 190429646 CCCGGCTGCAGGCCCTGCAGTGGACTAGTGAGATTCAGCTTCCAGTTCAACCCCTTTCTCCTGCTATCC-CTGCATCATGGATGTAGTTTAGCCCTGGTGGGTAATTTGGATATTTGGGATGGCTGAGCTGAAACAAA---------------ACAGATGGAAATTGGTGATAATTGGTACTTTGTGGAAAGGTGAGAAAAGCATAAAGAATGTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110770381 199 - 189454096 CCCGGCTGCAGGCCCTGCAGTGGACTAGCGAGATTCAGCTTCCAGTTCAACCCCTTTCTCCTGCTATCC-CTGCATCATGGATGTAGTTTAGCCCTGGTGGGTAATTTGGATATTTGGGATGGCTGAGCTGAAACAAA---------------ACAGATGGAAATTGGTGATAATTGGTACTTTGTGGAAAGGTGAGAAAAGCATAAAGAATGTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13337462 199 + 26754465 CCCGGCTGCAGGCCCTGCAGTGGACTAGCGAGATTCAGCTTCCAGTTCAACCCCTTTCTCCTGCTATCC-CTGCATCATGGATGTAGTTTAGCCCTGGTGGGTAATTTGGATATTTGGGATGGCTGAGCTGAAACAAA---------------ACAGATGGAAATTGGTGATAATTGGTACTTTGTGGAAAGGTGAGAAAAGCATAAAGAATGTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4238270 192 - 5137665 CCCGGCTGCAGGCCCTGCAGTGGACTAGGGAGATCCAGCTTCCAGTTCAACCCCTTTCTCCTGCTATCC-CTGCATCATGGATGCAGTTTAGCCCTGGTGGGTAATTTGGATATTTGGGATGGCTGAGCTGAAAC----------------------ATGGAAATTGGTGATAATTGGTACTTTGTGGAAAGGTGAGAAAAGCATAAAGAATGTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122944638 199 - 135778131 CCCGGTTGCAGGCCCTGCAGTGGACTAGCGAGATTCAGCTTCCAGTTCAACCCCTTTCTCCTGCTATCC-CTGCATCATGAATGTAGTTTAGCCCTGGTGAGTAATTTGGATATTTGGGATGGCTGAGCTGAAACAAA---------------ACAGATGGAAATTGGTGATAATTGGTACTTTGTGGAAAGGTGAGAAAAGCATAAAGAATGTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2060240 192 + 2427316 CCCGGCTGCAGGCCCTGCAGTGGACTAGGGAGATCCAGCTTCCAGTTCAACCCCTTTCTCCTGCTATCC-CTGCATCATGGATGTAGTTTAGCCCTGGTGGGTAATTTGGATATTTGGGATGGCTGAGCTGAAAC----------------------ATGGAAATTGGTGATAATTGGTACTTTGTGGAAAGGTGAGAAAAGCATAAAGAATGTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1355569 199 + 1448899 CTCGGCTGCAGGCCCTGCAGCGGACTAGGGAGATTCAGCTTCCAGTTCAACCCCTTTCTCCTGCTATCC-CTGCATCACTGATGTAGTTTAGCCCTGGTGGGTAATTTCGATATTTGGGATGGCTGAGCTGAAACAAA---------------ACAGATGGAAATTGGTGATAATTGGTATTTTGTGGAAAGGTGAGAAAAGCATAAAGAATGTA i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8228926 181 - 15139346 CCCAGCTGCAGGCCCTCCAGTGTACTAGGGAGATTCAGCTTCCAGATGAACCCCTTTCTCCTGCTATCC-CTGCATCATGGTTGTAGTTCAGCCCTCGTGGATAATTTGGATGTTTGGGATG-------------------------------GCAGATG-CAGTTGGTGATAATTCATACTTTGTAGAAAGGTGAGAAAAGCAT-AAGAATGGA i saiBol1.JH378162 I 40 C 0 s cebCap1.NW_016107439v1 7014261 181 - 7304997 CCCAGCCGCAGGCCCTCCAGTGGACTAGGTAGATTCAGCTTCCAGATGAACCCCTTTCTCCTGCTATCC-CTGCATCATAGATGTAGTTTAGCCCTCGTGGATAATTTGGATGTTTGGCATG-------------------------------GCAGATG-CAATTGGTGATAATTAATGCTTTGTAGAAAGGTGAGAAAAGAAT-AAGAATGTA i cebCap1.NW_016107439v1 I 367 C 0 s aotNan1.NW_018493494v1 9432739 181 - 11631747 cccagctgcaggccctgcagtggacTAGGAAGATCCAGCTTCCAGATGAACCCCTTTCTCCTGCTATCC-CTGCATCATGGATGTAGTTTAGCCCTCGCGGGTAATTTGGATGTTTGGGATG-------------------------------GCAGATG-CAATTGGTGATAATTAGTACTTTGTAGAAAGGTGAGAAAAGCAT-AAGAAGGTA i aotNan1.NW_018493494v1 I 371 C 0 s canFam3.chr13 48037878 191 + 63241923 ACCAGCTGCAGACCCCAGAGTACACAAAGAAGA------------ATCAATCCCTTCCTCCTCCTAGCCACTGCATCATGGATATAGATTAGCACTGGTGGG-----TGGATGACTGAGGTGG----GATGAAGCAAATGGAAGTGGGATGAAGCAAATGGAAGTTGG---TAATTGGCACTTTGTAAAAAGATGCTTAAAGCATAAAGAATGCA i canFam3.chr13 C 0 I 21 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e calJac3.chr3 53053760 5346 - 190850796 I a score=4328590.000000 s hg38.chr4_KI270787v1_alt 108460 505 + 111943 cagttgatccctaaacaacacgagtttgaatggtgtgggtacacttacacatggattttcttctgcctcagccactcctgagacaacaagaccaacccctcctcatcccctcctcctcagcctactcaacgtgatgacaacaaggatgaagacctttatgatgatccacttccactcgatgaatggtaaacatattttctcttccttatgattttctcaataacattttcttttctctagcttactctg-tggtaagaatacactgtaacatatgcgtaagaatac--acattacatacaaca--------tacatgtacatataagagcacatataacatacaaaatatgtgctaatcaactatgttattggtaaggtttacggtcgacagtaggctattagtagttttgggggagtcaaaagttgtatgtggattttcaactgcacagggagttgacacccctaacccctacattgttaaagggtcaactgCAGTAATGTTCAGCTCTGTCCTt s panTro5.chr4 119675671 505 - 194502333 cagttgatccctaaacaacacgagtttgaatggtgtgggtacacttacacatggattttcttctgcctcagccactcctgagacaacaagaccaacccctcctcatcccctcctcctcagcctactcaacgtgatgacaacaaggatgaagacctttatgatgatccacttccactcgatgaatggtaaacatattttctcttccttatgattttctcaataatattttcttttctctagcttactctg-tggtaagaatacactgtaacatatgcataagaatac--acattacatacaaca--------tacatgtacatataagagtacatatagcatacaaaatatgtgctaatcaactatgttattggtaaggtttatggtcgacagtaggctattagtagttttgggggagtcaaaagttgtatgtggattttcaactgcacagggagttgacacccctaacccctacattgttaaagggtcaactgCAGTAATGTTCAGCTCTGTCCTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121089501 505 - 195804263 cagttgatccctaaacaacacgagtttgaatggtgtgggtacacttacacatggattttcttctgcctcagccactcctgagacaacaagaccaacccctcctcatcccctcctcctcagcctactcaacgtgatgacaacaaggatgaagacctttatgatgatccacttccactcgatgaatggtaaacatattttctcttccttatgattttctcaataacattttcttttctctagcttactctg-tggtaagaatacactgtaacatatgcataagaatac--acattacatacaaca--------tacatgtacatataagagtacatatagcatacaaaatatgtgctaatcaactatgttattggtaaggtttatggtcgacagtaggctattagtagttttgggggagtcaaaagttgtatgtggattttcaactgcacagggagttgacacccctaacccctacattgttaaagggtcaactgCAGTAATGTTCAGCTCTGTCCtt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4518491 505 - 17550833 cagttgatccctaaacaacacgagtttgaatggtgtgggtacacttacacatggattttcttttgcctcagccactcctgagacaacaagaccagcccctcctcatcccctcctcctcagcctactcaacgtgatgacaacaagcatgaagacctttatgatgatccacttccacttgatgaatggtaaacatattttctcttccttatgattttctcaataacattttcttttctctagcttactctg-tggtaagaatacactgtaacatatgcataagaatac--acattacatacaaca--------tacatgtacatataagagtacatataacatacaaaatatgtgctaatcaactatgttattggtaaggtttatggtcgacagtaggctattagtagttttgggggagtcaaaagttgtatgtggattttcagctgcacagggagttgacacccctaacccctacgttgttaaagggtcaactgCAGTAATGTTCAGCTCTGTCCTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69390837 502 - 118206036 cagttgatccctaaacaacacgagtttgaatggtgtgggtacacttatacatggattttcttctgcctcggccgctcctgagacaacaagaccaaccccttctcttcccctcctcctcagcctactcaacatgatgacaacaaggatgaagccttttatgatgatccacttccactcagtgaatggtaaacatatttgctcttccttatgattttctcaataacattttcttttctctagcttactctg-tggtaagaatacactgtaacatacgtataagaatac--acattacatacaaca--------tacatgtacgtataagaatacatataacatataaaatatgtgctaat---ctatgttactggcaaggcttatggtcgacagtaggctattagtagttttgggggagtcaaaagttgtatgtggattttcaactgcacagggagttgacacccctaacccctacattgttaaagggtcaactgCAGTAATGTTCAGCTCTGTCCtt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111601368 505 - 190429646 cagttgatccctaaacaacacgagtttgaattgtgtgggtacacttatacatggattttcttctgcctcggccactcctgagacaacaagaccaacccctcctcttcccctcctcctcagcctactcaacgtgatgacaacaaggatgaagacctttatgatgatccacttccacttaacgaatggtaaacatattttctcttccttatgattttctcaatagcattttcttttctctagcttactctg-tgctaagaatacactgtaacatacgtataagaatac--acattacatacaaca--------tacatgtacatataagaatacatataacacacaaaatatgtgctaatcaactatgttattggtaaggcttatggttgacagtaggctattagtagttttgggggagtcaaaagttgtgtgtggattttcaactgcacagggagttgacacccctaacccctacattgttaaagggtcaactgCAGTAATGTTCAGCTCTGTCCTT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110770580 505 - 189454096 cagttgatccctaaacaacacgagtttgaattgtgtgggtacacttatacatggattttcttctgcctcggccactcctgagacaacaagaccaacccctcctcttcccctcctcctcagcctactcaacgtgatgacaacaaggatgaagacctttatgatgatccacttccacttaacgaatggtaaacatattttctcttccttatgattttctcaatagcattttcttttctctagcttactctg-tgctaagaatacactgtaacatacgtataagaatac--acattacatacaaca--------tacatgtacatataagaatacatataacacacaaaatatgtgctaatcaactatgttattggtaaggcttatggtcgacagtaggctattagtagttttgggggagtcaaaagttgtgtgtggattttcaactgcacagggagttgacacccctaacccctacattgttaaagggtcaactgCAGTAATGTTCAGCTCTGTCCTT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13337661 505 + 26754465 cagttgatccctaaacaacacgagtttgaattgtgtgggtacacttatacatggattttcttctgcctcggccactcctgagacaacaagaccaacccctcctcttcccctcctcctcagcctactcaacgtgatgacaacaaggatgaagacctttatgatgatccacttccacttaacgaatggtaaacatattttctcttccttatgattttctcaatagcattttcttttctctagcttactctg-tgctaagaatacactgtaacatacatataagaatac--acattacatacaaca--------tacatgtacatataagaatacatataacacacaaaatatgtgctaatcaactatgttattggtaaggcttatggtcgacagtaggctattagtagttttgggggagtcaaaagttgtgtgtggattttcaactgcacagggagttgacacccctaacccctacattgttaaagggtcaactgCAGTAATGTTCAGCTCTGTCCtt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4238462 505 - 5137665 cagttgatccctaaacaacacaagtttgaattgtgtgggtacacttatacatggattttcttctgcctcggccactcctgagacaacaagaccaacccctcctcttcccctcctcctcagcctactcaacgtgatgacaacaaggatgaagacctttatgatgatccactgccactcaatgaatggtaaacatattttctcttccttatgattttctcaatagcattttcttttctctagcttactctg-tgctaagaatacactgtaacatacgtataagaatac--acactacatacaaca--------tacatgtacatataagaatacatataacacacaaaatatgtgctaatcaactatgttattggtaaggcttatggtcgacagtaggctattagtagttttgggggagtcaaaagttgtatgtggattttcaactgcacagggagttgatacccctaacccctacattgttaaagggtcaactgCAGTAACGTTCAGCTCTGTCCTT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122944837 505 - 135778131 cagttgatccctaaacaacacaagtttgaattgtgtgggtacacttatacaaggattttcttctgcctccgccactcctgagacaacaagaccaacccctcctcttcccctcctcctcagcctactcaacgtgatgacaacaaggatgaagacctttatgatgatccacttccacttaacgaatggtaaacatattttctcttccttatgattttctcaatagcattttcttttctctaacttactctg-tgctaagaatacactgtaacatacgtataagaatac--acattacatacaaca--------tacatgtacatataagaatacatataacacacaaaatatgtgctaatcaactatgttattggtaaggcttatggtcgacagtaggctattagtagttttgggggagtcaaaagttgtatgtggatttttaactgcacagggagttgacacccctaacccctacattgttaaagggtcaactgCAGTAATGTTCAGCTCTGTCCTT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2060432 502 + 2427316 cagttgatccctaaacaacacaagtttgaattgtgtgggtacacttatacatggattttcttctgcctcggccactcctgag---acaagaccaacccctcctcttcccctcctcctcagcctactcaacgtgatgacaacaaggatgaagacctttatgatgatccacttccactcaacgaatggtaaacatattttctcttccttatgattttctcaatagcattttcttttctctagcttactctg-tgctaagaatacactgtaacatacgtataagaatac--acattacatacaaca--------tacatgtacatataagaatacatataacacacaaaatatgtgctaatcagctatgttattggtaaagcttatggtcgacagtaggctattagtagttttgggggagtcaaaagttgtatgtggattttcaactgcacagggagttgacaaccctaacccctacattgttaaagggtcaactgCAGTAACGTTCAGCTCTGTCCtt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1355768 505 + 1448899 cagttgatccctaaacaacacgagtttgaattgtgtgggtacacttatacatggattttcttctgcctcggctactgctgagacaacaagaccaacccctcctcttcctctcctcctcagcctactcaatgtgatgacaacaaggatgaagacctttatgatgatccacttccactcaacgaatagtaaacatattttctcttccttatgattttctcaatagcattttcttttcactagcttactctg-tactaagaatacactgtaacatacgtaaaagaatac--acattacatacaaca--------tacatgtacatataagaatacatataacacacaaaatatgtgctaattaactatgttattggtaaggcttatggttgacagtaggctattagtagttttgggggagtcaaaagttatatgtggattttcaactgcacagggagttgacacccctaacccctacattgttaaagggtcaactgCAGTAATGTTCAGCTCTGTCCtt i colAng1.NW_012119221v1 C 0 C 0 s saiBol1.JH378162 8229107 477 - 15139346 cagctgatccctgaaca-----agtttgaattgcgtgggtccacttacacatggattttcttctgcctctgctactcttgag---acaagaccaacctctcctcctcttc---ttctcagcctactcaacgtgatg---acaaggatgaaaacatttatcatgatccacttccactcaatgagcagtaaacagattttctcttccttatgattttctcaattaca-tttcttttctctagcttattcta-tggcaagaatacactgtaacatacatacaagaacacatatat----tataaca--------tacatacacatattagaatacat-----atacaaaataagtgctaatcaaccacgttattggtaaggcttaacgtcaacagtaggctattggtagtctggggggagtcataagctgtatgtgggttttcaaccgcacagggagttgacaccccaaacgcccacattgttcaag------CTGCAGTAATCGTCAGCTCCGTCCTT i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7014442 504 - 7304997 cagctgatccctgaacaacacgagtttgaattgcgtgggtccacttacatatggatttccttctgcctctgctactcttgag---acaagaccaacccctcctcttctcctctttctcagcctactcaacttgatgacaacaaggatgaagacatttatgataatccacttccagtcaatgaacagtaaacagattttctcttccttatgattttctcagttaca-tttcttttctctagcttattctattgggaagaatacactgtaacatacatacaagaatatatatATAacctacaacatacatacgtacatacacatataAGaatacatataacatacaaaataagtgctaatcaactatgttattggtaaggcttatcgtcaacagtaggctattagtagtct-gggggagtcaaaagttgtatgtggattttcatccgcat-gggggttgacaccccaaatccctacattgttcaag------CTGCAGTAATCCTCAGCTGTGTCCTT i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9432920 497 - 11631747 cagctgatccctgaacaacacaagtttgaattgcgtgggtccatttacatatggatttccttctgcctctgctactcttgag---acaagaccaatccctcctcttctcctccttctcagcctactcaacgtgatgacaacaaggatgaagacatttatgataatccacttccactcaatgaacagtaaacagattttctcttccttatgattttctcaattaca-tttcttttctctagcttattcta-tggcaagaatacactgtaacatacatacaagaatacatatataacacacaaca--------tacatacacatataagaatacatataacatacaaaataagtgctaatcaactatgttattggtaaggtttatcgtcgacagtaggctattagtagtctcgggggagtcaaaagtgatatgtggattttcaactgcacagggagttgacaccctaaacccctacattgttcaag------CTGCAGTAATCCTCAGCTCTGTCCTT i aotNan1.NW_018493494v1 C 0 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48038069 21 + 63241923 I a score=90003.000000 s hg38.chr4_KI270787v1_alt 108965 37 + 111943 tcttcttttttt----------ttttaattttttattttttga-gaca s panTro5.chr4 119676176 36 - 194502333 TCttcttttttt----------tttt-attttttattttttga-gaca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121090006 34 - 195804263 tcttcttttttt----------tt---attttttattttttga-gaca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4518996 37 - 17550833 TCttcttttttt----------tttt-attttttattttttgatgaca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69391339 34 - 118206036 tcttcttttttt----------tt---attttttactttttga-gatg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111601873 37 - 190429646 TCTTCTTTTTTT-AATTGA---tttt-ttttttttttttttt------ i rheMac8.chr5 C 0 I 13 s macFas5.chr5 110771085 37 - 189454096 TCTTCTTTTTTT-AATTGA---tttt-ttttttttttttttt------ i macFas5.chr5 C 0 I 13 s macNem1.NW_012012466v1 13338166 37 + 26754465 tcttcttttttt-aattga---tttt-attttattttattta------ i macNem1.NW_012012466v1 C 0 I 19 s cerAty1.NW_012001307v1 4238967 37 - 5137665 TCTTCTTTTTTT-AATTGA---tttt-ttttttttttttttt------ i cerAty1.NW_012001307v1 C 0 I 10 s chlSab2.chr7 122945342 37 - 135778131 TCTTCTTTTTTT-AATTAA---Gttt-ttttttttttttttt------ i chlSab2.chr7 C 0 I 10 s manLeu1.NW_012104388v1 2060934 40 + 2427316 tcttcttttttt-aattgattttttt-ttttttttttttttt------ i manLeu1.NW_012104388v1 C 0 I 10 s colAng1.NW_012119221v1 1356273 38 + 1448899 tcttctttttttaaattga---attt-tttttttttttttga------ i colAng1.NW_012119221v1 C 0 I 4 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e aotNan1.NW_018493494v1 9433417 0 - 11631747 C e cebCap1.NW_016107439v1 7014946 0 - 7304997 C e saiBol1.JH378162 8229584 0 - 15139346 C e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48038069 21 + 63241923 I a score=243147.000000 s hg38.chr4_KI270787v1_alt 109002 54 + 111943 gagtctcgctctgtcgcccaggctggagtgcagtggcgctatctcggctcactg s panTro5.chr4 119676212 54 - 194502333 gagtctcgctctgtcgcccaggctggagtgcagtggcgctatctcggctcactg i panTro5.chr4 C 0 C 0 s panPan2.chr4 121090040 54 - 195804263 gagtctcgctctgtcgcccaggctggagtgcagtggcgctatctcggctcactg i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4519033 54 - 17550833 gagtctcgctctgtcacccaggctggagtgcagtggcgctatctcggctcactg i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69391373 54 - 118206036 gagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactg i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111601923 54 - 190429646 gagtctcactgtgtccgccaggctggagtacagtggcgcaatctcggctcactg i rheMac8.chr5 I 13 C 0 s macFas5.chr5 110771135 54 - 189454096 gagtctcactgtgtccgccaggctggagtacagtggcgcaatctcggctcactg i macFas5.chr5 I 13 C 0 s cerAty1.NW_012001307v1 4239014 54 - 5137665 gagtctcactgtgtccgccaggctggagtacaatggcgcaatctcggctcactg i cerAty1.NW_012001307v1 I 10 C 0 s chlSab2.chr7 122945389 54 - 135778131 gagtctcactgtgtccgccaggctggagtacagtggcgcaatctcggctcactg i chlSab2.chr7 I 10 C 0 s manLeu1.NW_012104388v1 2060984 54 + 2427316 gagtctcactgtgtccgccaggctggagtacaatggcgcaatctcggctcactg i manLeu1.NW_012104388v1 I 10 C 0 s colAng1.NW_012119221v1 1356315 52 + 1448899 gagtctcactgtgtccgccaggctggagtgcagtg--gcaatctcggctcactg i colAng1.NW_012119221v1 I 4 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e aotNan1.NW_018493494v1 9433417 0 - 11631747 C e cebCap1.NW_016107439v1 7014946 0 - 7304997 C e saiBol1.JH378162 8229584 0 - 15139346 C e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48038069 21 + 63241923 I e macNem1.NW_012012466v1 13338203 19 + 26754465 I a score=826928.000000 s hg38.chr4_KI270787v1_alt 109056 153 + 111943 caagctccacctcccgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcacccaccaccatgcccggctaatttttttta--tttagtagagatgagattgcaccgtattagccaggattgtctcgatctcctgacc s panTro5.chr4 119676266 153 - 194502333 caagctccacctcccgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccaccacgcccggctaatttttttta--tttagtagagatgagattgcaccgtattagccaggattgtctcgatctcctgacc i panTro5.chr4 C 0 C 0 s panPan2.chr4 121090094 153 - 195804263 caagctccacctcccgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccaccaccacgcccggctaatttttttta--tttagtagagatgagattgcaccgtattagccaggattgtctcaatctcctgacc i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4519087 153 - 17550833 caagctccacctcccaggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccacaacgcccggctaatttttttta--tttagtagagatgagattgcaccgtattagccaggattgtctcgatctcctgacc i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69391427 155 - 118206036 caagctccgcctcctgggttcatgccattctcctgcctcagcctcccgagtagctgggaccacaggcgcccacaaccacgcccggctaattttttgtgtttttagtagagacgatgtttcaccatattagccaggatggtctcgatctcctgacc i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111601977 155 - 190429646 caacctccgcctcccaggttcacgccattctcctgcctcagcctcccaagtaactgggactacaggcacccaccaccacacccagttaattttttatatttttagtagagacagggtttcaccgtgttagccaggatgatctcgatctcctgaca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110771189 155 - 189454096 caacctccgcctcccaggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcacccgccaccacgcccagttaattttttatatttttagtagagacagggtttcaccgtgttagccaggatgatctcgatctcctgaca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13338222 155 + 26754465 caacctccgcctcccaggtttacgccattctcctgcctcagcctcccaagtagctgggactacaggcacccgccaccacgcccagttaattttttatatttttagtagagacagggtttcaccgtgttagccaggatgatctcgatctcctgaca i macNem1.NW_012012466v1 I 19 C 0 s cerAty1.NW_012001307v1 4239068 155 - 5137665 caacctctgcctcccaggttcacgccattctcctgactcagcctcccaagtagctgggactacaggcacccgccaccacgcccagttaattttttatatttttagtagagacagggtttcaccgtgttagccaggatgatctcgatctcctgaca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122945443 155 - 135778131 caacctctgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcacccgacaccacgcccagttaattttttatatttttagtagagacagggtttcaccgtgttagccaggatgatctcgatctcctgaca i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2061038 155 + 2427316 caacctccgcctcccaggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcacccgccaccacgcccagttaattttttatatttttagtagagacagggtttcaccgtgttagccaggatgatctcgatctcctgaca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1356367 155 + 1448899 caacctccgcctcccgggttcacaccattctcctgcctcagcctcccaagtagctgggactacaggcacccctcaccacgcccagctaattttttatatttttagtagagacagggtttcaccatgttagccaggatgatctcgatctcctgacc i colAng1.NW_012119221v1 C 0 C 0 e mm10.chr5 76453550 3846 + 151834684 I e dasNov3.JH568349 4130681 4228 - 5279953 I e aotNan1.NW_018493494v1 9433417 0 - 11631747 C e cebCap1.NW_016107439v1 7014946 0 - 7304997 C e saiBol1.JH378162 8229584 0 - 15139346 C e calJac3.chr3 53053760 5346 - 190850796 I e canFam3.chr13 48038069 21 + 63241923 I a score=8923308.000000 s hg38.chr4_KI270787v1_alt 109209 849 + 111943 tcTTCTTACTGAAAATGCATGCG-GCATTGATGTAAGCATCTACCTTAAGGACAATGCAGAGGAAACCCTCTGG-CTGACAGAAATTTTATTCCCTGAACTGACAACTACTCTCACCTGATTAAATACAAA------------CTTTCCATCCCTACCAGTATCTTTTTGACAAC-ATCCAGAAcagggatttccaacctatcacctctggagctccttgaagaagtaaaaggggattgggattaag--tggga--ttttgaattttgaatatttccaaatgtctaatgagatcatttatttacctgtgataaaaccacccagaataatatgtaaattgtatttgcttcagctggaatcacatccactcagtatggaaatatgggttatttttattgta-tttttatttataaaaaataactgattaaaagtgc----tgataggaagat-atgtcttaaattttcaaaag-agg------gagataaatggactattaatgaatgacttttgttcaggaggcaaaaacctttgaaa-----acatagggttcatggggCAGCAATGATTAGGAA--------CTAGTGCACTACT----GTGTAAGACAGATACCC---TGCCCTTGGCTCTTGACTGTGAAAGTCCCCACTCCTACCCCATCATCAGCATCCTC----ACCCCCAGCACTTCTTCCTACCCTGGAAAGCCTTTTCTGGTGATCTTTTCCTGTAAATTAGAAGTGCTTGGTAATT-TAATGTCATCTTAATTGATTTATGCATATACAAGAAAGCTATCAACCTCAAAACAT-GCACATAATTCATAAAGAC-TTGAGTAAATATAGTGTCTATTTTTACATCTTCAGGATTACAATTTGTTATTTAAAATAGATTCTCTAAGAAAG s panTro5.chr4 119676419 848 - 194502333 tcTTCTTACTGAAAATGCATGCG-GCATTCATGTAAGCATCTACCTTAAGGACAATGCAGAGGAAACCCTCTGG-CTGACAGAAATTTTATTCCCTGAACTGACAACTACTCTTACCTGATTAAATACAAA------------CTTTCCATCCCTGCCAGTATCTTTTTGACAAC-ATCCAGAAcagggatttccaacctatcacctctggagctccttgaagaagtaaaaggggattgggattaag--tgggg--ttttgaattttgaatatttccaaatgtctaatgagatcatttatttacctgtgataaaaccacccagaataatatgtgaattgtttttgcttcagctggaatcacatccactcagtatggaaatatgggttatttttattgta-tttttatttataaaaaataactgatcaaaagtgc----tgataggaagat-atgtcttaaattttcaaaag-agg------gagataaatggactattaatgaatgacttttgttcaggaggcaaaaacctttgaaa-----acatagggttcgtggggCAGCAATGATTAGGAA--------CTAGTGCACTACT----GTGTAAGACAGATCCCC---TGCCCTTGGCTCTTGACTGTGAAAGTCCCCACTCCTA-CCCATCATCAGCATCCTC----ACCCCCAGCACTTCTTCCTACCCTGGAAAGCCTTTTCTGGTGATCTTTTCCTGTAAATTAGAAGTGCTTGGTAATT-TAATGTCATCTTAATTGATTTATGCATATACAAGAAAGCTATCAACCTCAAAACAT-GCACATAATTCATAAAGAC-TTGAGTAAATATAGTGTCTATTTTTACATCTTCAGGATTACAATTTGTTATTTAAAATAGATTCTCTAAGAAAG i panTro5.chr4 C 0 C 0 s panPan2.chr4 121090247 849 - 195804263 tcTTCTTACTGAAAATGCATGCG-GCATTCATGTAAGCATCTACCTTAAGGACAATGCAGAGGAAACCCTCTGG-CTGACAGAAATTTTATTCCCTGAACTGACAACTACTCTTACCTGATTAAATACAAA------------CTTTCCATCCCTGCCAGTATCTTTTTGACAAC-ATCCAGAAcagggatttccaacctatcacctctggagctccttgaagaagtaaaaggggattgggattaag--tgggg--ttttgaattttgaatatttccaaatgtctaatgagatcatttatttacctgtgataaaaccacccagaataatatgtgaattgtatttgcttcagctggaatcacatccactcagtatggaaatatgggttatttttattgta-tttttatttataaaaaataactgatcaaaagtgc----tgataggaagat-atgtcttaaattttcaaaag-agg------gagataaatggactattaatgaatgacttttgttcaggaggcaaaaacctttgaaa-----acatagggttcgtggggCAGCAATGATTAGGAA--------CTAGTGCACTACT----GTGTAAGACAGATCCCC---TGCCCTTGGCTCTTGACTGTGAAAGTCCCCACTCCTACCCCATCATCAGCATCCTC----ACCCCCAGCACTTCTTCCTACCCTGGAAAGCCTTTTCTGGTGATCTTTTCCTGTAAATTAGAAGTGCTTGGTAATT-TAATATCATCTTAATTGATTTATGCATATACAAGAAAGCTATCAACCTCAAAACAT-GCACATAATTCATAAAGAC-TTGAGTAAATATAGTGTCTATTTTTACATCTTCAGGATTACAATTTGTTATTTAAAATAGATTCTCTAAGAAAG i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4519240 847 - 17550833 tcTTCTTACTGAAAATGCATGCG-GCATTGATGTAAGCATCTACCTTAAGGACAATGCAGAGGAAACCCTCTGG-CTGACAGAAATTTTATTCCCTGAACTGACAACTACTCTTACCTGATTAAATACAAA------------CTTTCCATCCCTGCCAGTATCTTTTTGACAAC-ATCCAGAAcagggatttccaacctatcacctctggagctccttgaagaagtaaaaggggattgggattaag--tggga--ttttgaattttgaatatttccaaatgtataatgagatcatttatttacctgtgataaaaccacccagaataatatgtaaattgtatttgcttcagctggaatcacatccactcagtatggaaatatgggttatttttattgta-tttttatttataaaaaataactgatcaaaagtgc----tgataggaagat-atgtcttaaattttcaaaag-agg------gagataaatggactattaatgaatgacttttgttcaggaggcaaaaacctttgaaa-----acatagggttcgtggggCAGCAATGATTAGGAA--------CTAGTGCACTACT----GTGTAAGACAGATACCC---TGCCCTTGGCTCTTGACTGTGAAAGTCCCCACTCCTACCCCATCATCAGCATCCTC----ACCCCCAGCACTTCTTCCTACCCTGGAAAGCCTTTTCTGGTGATCTTTTCCTGTAAATTAGAAGTGCTTGGTAATT-TAATGTCATCTTAATTCATTTATGCATATACAAGAAAGCTATCAACCTCAAAACAT-GCACATAATTCATAAAGAC---GAGTAAATATAGTGTCTATTTTTACATCTTCAGGATTACAATTTGTTATTTAAAATAGATTCTCTAAGAAAG i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69391582 847 - 118206036 tcTTCTTACTGAAAATGCATGCA-GCGTTGAGGTAAGCATCTACCTTAAGGACAATGCAGAGGAAACCCTCTGG-CTGACAGAAATTTTATTCCCTGAACTGACAGCTACTCTTACCTGATTAAATACAAA------------CTTTCCATCCCTGCCAGTATCTTTTTGACAAC-ATCCAGAAcagggatttccaacctatcacctctggagctccttgaagaagtaaaaggggattggggataag--tggga--ttttgaattttgaatatttctaaatgtctaatgagatcatttatttacctgtgataaagccacccagaataatatgtaaattgcatttgcttcagctggaatcacatccactcagtatggaaatatgggttatttTTATTATA-TTTTTATTTATAAAAAATAACTGATCAAAAGTGC----TGATAGGAAGAT-ACATCTTAAATTTTCAAAAG-AGG------GAGATAAATGGACTATTAATGAATGACTTTTGTTCAGGAGGCAAAAACCTTTGAAA-----ACACAGGGTTTGTGGGGCAGCAATGATTAGGAA--------CTAGTGCACTACC-----TGTAAGATTGAT-CCC---TGCCCTTGGCCTTGGACTCTGAAAGTCCCCACTCCTACCCCATCATCAGCATCCTC----ACCCCCAGCACTTCTTCCTACCCTGGAAAGCCTTTTCTGGTGATCTTTTCCTGTAAATTAGAAGTGCTTGGTAATT-TAATGTCATCTTAATTGATTTATGCATATACAAGAAAGCTATAAACCTCAAAACAT-GAACATGATTCATAAAGAC-TTGAGTAAATACAGTGTCTATTTTTACATCTTCAGGATTACAATTTGTTATTTAAAATAGATTCTCTAAGAAAG i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111602132 800 - 190429646 tcTTCTTACTGAAAATGCATGCA-GCATTGAGGTAAGCATCTACCTTAAGGGCAGTGCAGGGGAAACCCTCTGG-CTGACAGAAATTTTATTCCCTGAACTGACAACTACTCTTACCTGATTAAATACAAA------------CTTTCCATCCCTG------------------------------------------CTATCACCTCTGGAGCTCCTTGAAGAAGTAAAAGGGGATTGGGGATAAG--TGGGA--TTTTGAattttgagtatttccaaatgtctaatgagatcatttatttacctgtgataaagccacccagaataatatgtaaattgtatttgcttcagctggaatcacatccactcagcatggaaatatgggttatttttattgta-tttttatttataaagaataactgatcaaaagtgc----tgataggaagat-atgtcttaaattttcaaaag-tgg------gagataaatggactattaatgaatgacttttgttcaggtggcaaaaacctttgaaa-----acacagggttcatggagCAGCAATGATTAGGAA--------CTAGTGCACTACT----GTGTAAGATAGATACCC---TGCCCTTGGCTCTTGACTCTGAAAGTCCCCACTCCTACCCCATCATCAGCATCCTT----ACTCCCAGCACTTTTTCCTACCCTGGAAAGCCTTTTCTGGTGATCTTTTCCTGTAAATTAGAAGTGCTTGGTAATT-TAATGTTA-ATTAATTGATTTATGCATATACAAGAAAGCTATAAA-------ACAT-GCACATGATTCATAAAGAC-TCGAGTAAATATAGTGTCTATTTTTACATCTTCAGGTTTACAATTTGTTATTTAAAATAGATGCTCTAAAAAAG i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110771344 800 - 189454096 tcTTCTTACTGAAAATGCATGCA-GCATTGAGGTAAGCATCTACCTTAAGGGCAGTGCAGGGGAAACCCTCTGG-CTGACAGAAATTTTATTCCCTGAACTGACAACTACTCTTACCTGATTAAATACAAA------------CTTTCCATCCCTG------------------------------------------CTATCACCTCTGGAGCTCCTTGAAGAAGTAAAAGGGGATTGGGGATAAG--TGGGA--TTTTGAattttgagtatttccaaatgtctaatgagatcatttatttacctgtgataaagccacccagaataatatgtaaattgtatttgcttcagctggaatcacatccactcagcatggaaatatgggttatttttattgta-tttttatttataaagaataactgatcaaaagtgc----tgataggaagat-atgtcttaaattttcaaaag-tgg------gagataaatggactattaatgaatgacttttgttcaggaggcaaaaacctttgaaa-----acatagggttcatggagCAGCAATGATTAGGAA--------CTAGTGCACTACT----GTGTAAGATAGATACCC---TGCCCTTGGCTCTTGACTCTGAAAGTCCCCACTCCTACCCCATCATCAGCATCCTC----ACCCCCAGCACTTTTTCCTACCCTGGAAAGCCTTTTCTGGTGATCTTTTCCTGTAAATTAGAAGTGCTTGGTAATT-TAATGTTA-ATTAATTGATTTATGCATATACAAGAAAGCTATAAA-------ACAT-GCACATGATTCATAAAGAC-TCGAGTAAATATAGTGTCTATTTTTACATCTTCAGGTTTACAATTTGTTATTTAAAATAGATGCTCTAAAAAAG i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13338377 800 + 26754465 tcTTCTTACTGAAAATGCATGCA-GCATTGAGGTAAGCATCTACCTTAAGGGCAGTGCAGGGGAAACCCTCTGG-CTGACAGAAATTTTATTCCCTGAACTGACAACTACTCTTACCTGATTAAATACAAA------------CTTTCCATCCCTG------------------------------------------CTATCACctctggagctccttgaagaagtaaaaggggattggggataag--tggga--ttttgaattttgagtatttccaaatgtctaatgagatcatttatttacctgtgataaagccacccagaataatatgtaaattgtatttgcttcagctggaatcacatccactcagcatggaaatatgggttatttttattgta-tttttatttataaagaataactgatcaaaagtgc----tgataggaagat-atgtcttaaattttcaaaag-tgg------gagataaatggactattaatgaatgacttttgttcaggaggcaaaaacctttgaaa-----acatagggttcatggagCAGCAATGATTAGGAA--------CTAGTGCACTACT----GTGTAAGATAGATACCC---TGCCCTTGGCTCTTGACTCTGGAAGTCCCCACTCCTACCCCATCATCAGCATCCTC----ACCCCTAGCACTTTTTCCTACCCTGGAAAGCCTTTTCTGGTGATCTTTTCCTGTAAATTAGAAGTGCTTGGTAATT-TAATGTTA-ATTAATTGATTTATGCATATACAAGAAAGCTATAAA-------ACAT-GCACATGATTCATAAAGAC-TCGAATAAATATAGTGTCTATTTTTACATCTTCAGGTTTACAATTTGTTATTTAAAATAGATGCTCTAAAAAAG i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4239223 801 - 5137665 tcTTCTTACTGAAAATGCATGCA-GCATTGAGGTAAGCATCTACCTTAAGGGCAGTGCAGAGGAAACCCTCTGG-CTGACAGAAATTTTATTCCCTGAACTGACAACTACTCTTACCTGATTAAATACAAA------------CTTTCCATCCCTG------------------------------------------CTATCACCTCTGGAGCTCCTTGAAGAAGTAAAAGGGGATTGGGGATAAG--TGGGA--TTTTGAattttgagtatttccaaatgtctaacgagatcatttatttacctgtgataaagccacccagaataatatgtaaattgtatttgcttcagctggaatcacatccactcagcatggaaatatgggttatttttattgta-tttttatttataaagaataactgatcaaaagtgc----tgataggaagat-atgtcttaaattttcaaaag-tgg------gagacaaatggactattaatgaatgacttttgttcaggaggcaaaaacctttgaaa-----acatagggttcatggggCAGCAATGATTAGGAA--------CTAGTGCACTACT----GTGTAAGATAGATACCC---TGCCCTTGGCTCTTGACTCTGAAAGTCCCCACTCCTACCCCATCATCAGCATCCTC----ACCTCCAGCACTTTTTCCTACCCTGGAAAGCCTTTTCTGGTGATCTTTTCCTGTAAATTAGAAGTGCTTGGTAATT-TAATGTCATCTTAATTGATTTATGCATATACAAGAAAGCTATAAA-------ACAT-GCACATGATTCATAAAGAC-TCGAGTAAATATAGTGTCTATTTTTACATCTTCAGGTTTACAATTTGTTATTTAAAATAGATGCTCTAAAAAAG i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122945598 801 - 135778131 tcTTCTTACTGAAAATGCATGCA-GCATTGAGGTAAGCATCTACCTTAAGGGCAGTGCAGAGGAAACCCTCTGG-CTGACAGAAATTTTATTCCCTGAACTGACAACTACTCTTACCTGATTAAATACAAA------------CTTTCCATCCCTG------------------------------------------CTATCACCTCTGGAGCTCCTTGAAGAAGTAAAAGGGGATTGGGGATAAG--TAGGA--TTTTGAattttgagtatttccaaatgtctaatgagaccatttatttacctgtgataaagccacccagaataatatgtaaattgtatttgcttcagctggaatcacatccactcagcatggaaatatgggttatttttattgta-tttttatttataaagaataactgatcaaaagtgc----tgataggaagat-acattttaaattttcaaaag-tgg------gagataaatggactattaatgaatgacttttgttcaggaggcaaaaacctttgaaa-----acatagggttcatggagCAGCAATGATTAGGAA--------CTAGTGCACTACT----GTGTAAGATAGATACCC---TGCCCTTGGCTCTTGACTCTGAAAGTCCCCACTCCTACCCCATCATCAGCATCCTC----ACCCCCAGCACTTTTTCCTACCCTGGAAAGCCTTTTCTGGTGATCTTTTCCTGTAAATTAGAAGTGCTTGGTAATT-TAATGTCATCTTAATTGATTTATGCATATACAAGAAAGCTATAAA-------ACAT-GCACATGATTCATAAAGAC-TCGAGTAAATATAGTGTCTATTTTTACATCTTCAGGTTTACAATTTGTTATTTAAAATAGATGCTCTAAAAAAG i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2061193 799 + 2427316 tcTTCTTACTGAAAATGCATGCA-GCATTCAGGTAAGCATCTACCTTAAGGGCAGTGCAGAGGAAACCCTCTGG-CTGACAGAAATTTTATTCCCTGAACTGACAACTACTCTTACCTGATTAAATACAAA------------CTTTCCATCCCTG------------------------------------------CTATCACCTCTGGAGCTCCTTGAAGAAGTAAAAGGGGATTGGGGATAAG--TGGGA--TTTTGAattttgagtatttccaaatgtctaatgagatcatttatttacctgtgataaagccacccagaataatatgtaaattgtatttgcttcagctggaatcacatccactcagcatggaaatatgggttatttttattgta-tttttatttataaagaataactgatcaaaagtgc----tgataggaagat-atgtcttaaattttcaaaag-tgg------gagataaatggactattaatgaatgacttttgttcaggaggcaaaaacctttgaaa-----acatagggttcatggggCAGCAATGATTAGGAA--------CTAGTGCACTACT----GTGTAAGATAGATACCC---TGCCCTTGGCTCTTGACTCTGAAAGTCCCCACTCCTACCCCATCATCAGCATCCTC----ACCCCCAGCACTTTTTCCTACCCTGGAAAGCCTTTTCTGGTGATCTTTTCCTGTAAATTAGAAGTGCTTGGTAATT-TAATGTCATCTTAATTGATTTATGCATATACAAGAAAGCTATAAA---------AT-GCACATGATTCATAAAGAC-TCGAGTAAATATAGTGTCTATTTTTACATCTTCAGGTTTACAATTTGTTATTTAAAATAGACGCTCTAAAAAAG i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1356522 791 + 1448899 tcTTCTTACTGAAAATGCATGCA-GTATTGAGGTAAGCATTTACCTTAAGGACAATGCAGAGGAAACCCTCTGG-CTGATAGAAATTTTATTCCCTGAACTGACAACTACTCTTACCTGATTAAATACAAG------------CTTTCCATCCCTG------------------------------------------CTATCGCctctggagctccttgaagaagtaaaagg------------------gga--ttttgaattttgagtatttccaaatgtctaatgagatcatttatttacctgtgataaagtcacccagaataatatgtaaattgtatttgcttcagctggaatcacatccactcagcatggaaatatgggttatttttattata-tttttatttataaagaataactgatcaaaagtgc----tgataggaagat-atgtcttaaatttccaaaag--gg------gagacaaatggattattaatgaatgacttttgttcaggaggcaaaaaccatagaaa-----acatagggttcatggggCAGCAATGATTAGGAA--------CTAGTGCACTGCT----GTGTAAGATAGATACCC---TGCCCTTGGCTCTTGACTCTGAAAGTCCCCACTCCTACCCCATCATCAGCATCCTC----ACCCCCAGCACTTCTTCCTACCCTGGAAAGCCTTTTCTGGTGATCTTTTCCTGTAAATTAGAAGTGCTTGGTAATT-TAATGTCATCTTAATTGATTTATGCATGTACAAGAAAGCTATAAATCTCAAAACAT-GCAGATGATTCATAAAGAC-TTGAGTAAATACAGTGTCTATTTTTACATCTTCGGGTTTACAATTTGTTATTTAAAATAGATTCCCTAAAAAAG i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53059106 834 - 190850796 TCTCCTTGGTGAAAATGCATGCA-GCATTGAGGTAAGCATCTACCTCAACGACAATGCAGAGGAAA--CTCTGG-CTGACAGAAATTTTATTCCCGGAACTGACGACTACTCTTATCTGATTAAACACAAA------------CTGTCCATCCCTGCCAGTATCTTTTTGACGAT-ATCCAGGATagggatttccaacctgtcaccgctggagctttttgaagaagtgaaagggggttggggataag--tggga--tttgga-------atatttccagatgtctaatgagatcatttacttacctgcgataaagccacccagagcaacatgcaaattttattt------gccggaatctcatccactcagcatggaaatatgggctatttttattata-tttttatttataaaaaatagctgatcaaaagcgcttattgacaggaagat-atgtcttaaatttttaaaag-agg------gagataaatggactattaatgaatgacttttgttcaggaagcagaaggctttgaaa-----acacagggttcgtagggCAGCAATGATTAGGAA--------CTAGTGCACTACT----GTGTAAGATA----CCC---TGCCTTTGGCTCTTGATTCTGAAAGTCCCCACTCCTACCCCATCATTAGCATCCTC----ACCCCCAGCACTTCTTCCTACTCCGGAAAGCCTTTTCCCATGATCTTTTCCTGTAAGTTAGAAGTGTTTGGTAATG-TAATGTCTTCTTAATTGATTTATGCATATACAAGAAAGCTATAAACCTCAAAACAT-GCATATGATTCATAAAGAC-TTGAGTAAATATAGTGTCTATTTTTACATCTTCAGGATTACAATTTGCTGTTTAAAATAGATTCTATAAGAAAG i calJac3.chr3 I 5346 C 0 s saiBol1.JH378162 8229584 825 - 15139346 TCTCCTTAGTGAAAATGCATGCA-GCATTGAGGCAAGCATCTACCTCAAGGACAATGTAGAGGAAACTCTCTGG-CTGACAGAAATTTTATTCCCTGAACTGACAACTACTCTTATCTGATTAAACACAAA------------CTGCCCATCCCTGCCAGTATCTTTTTGACAAT-ATCCAGAATAGGGATTTCCAACCTGTCACCTCTGGAGCTTTTTGAAGAAGTAAAAGAGGGTTGGGGATAAG--AGGGA--TTTTGAattttgcatatttccaaatgtctaatgagatcatttatttacctgcgataaagccacccagaacaacatgtaaattttattt------gctggaatcacatccactcagcatggaaatatgggc-----------ta-tttttatttataaaaaataactgatcaaaagtgcttattgataggaagataatgtcttaaatttttaaaag-agg------gagataaatggactattaatgaatgacttttgttcaggaagcagaaggctttgaaa-----acacagggttcgtggggCAGCAATGACTAGGAA--------CTAGTGCACTACT----GTGTAAGATA----CCC---TGCCTTTGGCTCTTGACTCTGAAAGTCCCCACTCCTACACCATC---AGCATCCTC----ACCCCCAGCACTTCTTCCCACTCCAGAAAGCCTTTTCCAGTGATCTTTTCCTGTAAGTTAGAAGTGTTTGGTAATT-TAACGTCATCTTAATTGATTTATGCATATACAAGAAAGCTATAAACCTCAAAACAT-GCATATGATTCATAAAGAC-TTGAGTAAATATAGTATCTATTTTTACATCTTCAGGATTACAATTTGCTGT-----ATTGATTCTGTAAGAAAG i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7014946 839 - 7304997 TCTCCTTAGTGAAAATGCATGCA-GCATTGAGGTAAGTATCTACCTCAAGGACAATGCAGAGGAAACTCTCTGG-TTGACAGAAATTTTATTCCCTGAACTGACAACTACTCTTATCTGATTAAACACAAA------------CTGTCCATCCCTGCCAGTATCTTTTTGATAAT-ATCCAGAGTAAAGATTTCCAACCTGTCACCGCTGGAGCTTTTTGAAGAAGTAAAAACGGGTTGGGGATAAG--AGGGA--TTTTGAattttgaatatttctaaatgtctaatgagatcatttatttacccgagataaagccatccagaacaacatgtaaattttattt------gctggaatcacatctactcagcatggaaatatgggctattttaattata-tttttatttat-aaaaataactgatcaaaagtgcttattgataggaagat-atgtcttaaatttttaaaag-agg------gagataaatggactattaatgaatgacttttgttcaggaagcggaaggctctgtaa-----acacagggttcat-gggCAGCAATGATTAGGAA--------CTAGTGCACTACT----GCCTAAGATA----TCC---TGCCTTTGGCTCTTGACTCTGAAAGTCCCCACTCCTACCCCATCATCAGCATCCTC----ACACCAAGCACTTCTTCCTACTCTGGAAAGCCTTTTCTGGTGATCTTTTCCTGTAAGTTAGAAGTGTTTGGTAATT-TAATGTCATCTTAATTGATTTATGCATATACAAGAAAGCTATAAACCTCAAAACAT-GCATATGATTCATAAAGA---TGAGTAAATATAGTATCTATTTTTACATCTTCAGGATTACAATTTGCTGTTTAAAATAGATTCTATAAGAAAG i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9433417 844 - 11631747 TCTCCTTAGTGAAAATGCATGCA-GCATTGAGGTAAGCATCTACCTCAAGGACAATGCAGAGGAAACTCTCTGG-CTGACAGAAATTTTATTCCCTGAACTGACAACTACTCTTATCTGATTAAACACAAA------------CTGTCCATCTCTGCCCGTATCTTTTTGACAAC-ATCCAGAATAGGGATTTCTAACCTGTCACGTCTGGAGCTTTTTGAAGAAGTAAAAGAGGGTTGGGGATAAG--Tggga--ctttgaattttgaatatttccaaatgtctcatgagatcatttatttacctgtgataaagccacccagaacaacatgtaaattttattt------gctggaatcacatccactcagcatggaaatatgggctatttttattatattttttatttataaaaaataactgatcaaaagtgcttattgataggaagat-atgtcttaaatttttaaaag-agg------gagataaatggactattaatgaatgacttttgttcaggaagcagaaggctttgaaa-----acacagggttcgtggggCAGCAATGATTAGGAA--------CTAGTACACTACT----GTGTAAGATA----CCC---TGCCTTTGGCTCTTGACTCTGAAAGTCGCCACTCCTACCCCATCATCAGCATCCTC----ACCCCCAGCACTTCTTCCTACTCCGGAAAGCCTTTTCCGGTGATCTTTTCCTGTAAGTTAGAAGTGTTTGGTAATT-TAATGTCATCTTAATTGATTTATGCATATACAAGAAAGCTATAAACCTCAAAACAT-GCATATGATTCATAAAGAC-TTGAGTAAATATAGTATCTATTTTTACATCTTCAGGATTACAATTTGCTGTTTAAAATAGATTCTATAAGAAAG i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48038090 790 + 63241923 TCTCCTTACCTAAAATGCATGTA-GCATTCAGGTACACAACTATCTTTAGGACAATGCAGGGGATATTATCTGG-TTTACAGTCCTTTTATTCCCTGAA-------TTATTCCTACCTGATTATATACAAA------------CTATACATCCCTACTAGTCTCTTTTTTACAAC-ATCTAGAACAGGGATTTCCAAAGTGTCACTTCTAGGACTACATAAAGAATTAAATGAGGTCGAGGGGTGAG--CAggaatttttgaactttgaatatttccaaaaaatcaatgagtacattaatttacctgtaataaagctgcccagaataatat--aactttcatttgctatagctggaatcatggcaactcagcatgaa------------------------------------------------ccaaagtgc----tgattgacagac-atcttttttatttgtaaaagcagg------gagataaattaactattaataaatgacttctgtt-aataggcaaaaAAAAAAAAAAAACCCACAAAGGGTTCATGGGGTGACAATAATTAGAAG--------CCAGGGTGCTACTTACTGGATAAGATG----CCC---TGCTCTCAGCTCTTGACCCTAGAAAGCC--------ATCCCGCCATCAGAATCCTCTAATCCCCTCAGCACTTGTT--TACCCTGGAATACCTTTTCTGGTGATGTCTGCCAGTACATTACAAGTGCTTGGTAATT-TAATACCATCTTTATTGCCTTATGCATAGTCAAGAAA-CTATATACTTCATAGTAT-GTCTATGATTCATAAAGAG-TTGAGTAAATACA---TCTATTTTTATACCTTCAGGAACATAATTCTCTACTTAAAATAGTTTCCATGAGAAAG i canFam3.chr13 I 21 C 0 s dasNov3.JH568349 4134909 825 - 5279953 TTTCCTTATCTAACACACATGTACAAACTGAGGTAAACATCTACTCTAAGGACAATGCAGAGGAAGAGCTCTGACCTTACAGTAATTTCAGTCTCTGAACTAACAATTACC----TCTGATTAGCTACAAACAAATGAACAATCTATTCA-CCCTACCAGTGCGCTTTTGGCATCGGTCTAGAGCAGAGGTTTCCAGCCTACTATCTCTGGAGCTCTCTGAAGTGGGAAAGGAGGA---GGAGTAGGGCAGGGG--TTTTGAatttttaatatttccaaa-gcctgatgacaccattaatttacctttgggaaagccattcggaataacatgtagattttgttt----caactgaaac----gcaatgtagcagggaatcctgg-------------ta-atttcatgt------------taaccaaaaattc----tgatt----gac-atgtcttcgatcaacaaaaa-aggtggggagggataaattaagcatcaatgaacgccttttgtttaggaggcaaagagctttcaaa-----acatgggcctcacagggTGGCAATGATTTACAATGAGTATGCTAGGATGCTACT----GCATAAG---CATCCCCATTCGCCCCCCACCCCCAACTCTGAAGG-----------GTCCCCTCACCAGAGCCCTC----ATCCCTGGCATGTCTTCCTACCCTAAGAAGTCTTCTCTGGTGATTTCTGTCTATAAATTACAGTTGCTTGGTGATTCTAATGTACTCTTGATTGCCTTAAGCATATCC-AGAAAGCTGTATTCATCATATTTTGGTACATGAGTCATAAAGAAATTGAGTAAATACAGTGTCTATTTTTACATCACCAGGAACATAATTCTCCATCATAAATAGTTCCTATGAGAAAG i dasNov3.JH568349 I 4228 C 0 e mm10.chr5 76453550 3846 + 151834684 I a score=6972780.000000 s hg38.chr4_KI270787v1_alt 110058 614 + 111943 ATGAACTGAATTTAAATCATGTTTATTTATACTCCTTTTTCCAAGTTGCAAATTCACTGTTAAATTGAAGTCTGCCTATGCCCACACACGAATTTCAGCTCATAGTAACAAGAATTTATATGGCTTTGATATTTACTAGTGTTAGAT-------CCCTCTGGGCTAAAAGGATGTCAGTGAATTCAAGGTAATGTCATAAGCACAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAAAG-ATGATGAAAATACTTGTAATACAGCACTTTA-TTCTTAGGATATTCTGAAATGCTTTAT-ATCTTAAGATGTTTAAAAATCAATACTGCTTTTTACTTTATAGCTGGTTTACAAAACGTAGTACACATCCTTTAGAAGCT-AAAAAACAACAACTGTAAATCCAATTTACCCAAGCATATAAAAATTTTCACAG-AAGCAGAAAAGGTTCACCTAATATTTTAGGGACAGAAATCTATATCTATGTAATGGATCACTGAAGTCT--------GCTAGTGAAATGTAC------TAGTTCCTAATC--------ATTGCTGccccatgaacgctgtgttttcaaaggcatttgcccc------ctgaacaa------------------aagtcattcattaatagttcat--ttatctctctctttttaaa s panTro5.chr4 119677267 614 - 194502333 ATGAACTGAACTTAAATCATGTTTATTTATACTCCTTTTTCCAAGTTGCAAATTCACTGTTAAATTGAAGTCTGCCTATGCCCACACACGAATTTCAGCTCATAGTAACAAGAATTTATATGGCTTTGATATTTACTAGTGTTAGAT-------CCCTCTGGGCTAAAAGGATGTCAGTGAATTCAAGGTAATGTCATAAGCACAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAAAG-ATGATGAAAATACTTGTAATACAGCACTTTA-TTCTTAGGATATTCTGAAATGCTTTAT-ATCTTAAGATGTTTAAAAATCAATACTGCTTTTTACTTTATAGCTGGTTTACAAAACATAGTACACATCCTTTAGAAGCT-AAAAAACAACAACTGTAAATCCAATTTACCCAAGCATATAAAAATTTTCACAG-AAGCAGAAAAGGTTCACCTAATATTTTAGGGACAGAAATCTATATCTATGTAATGGATCACTGAAGTCT--------GCTAGTGAAATGTAC------TAGTTCCTAATC--------ATTGCTGccccacgaaccctgtgttttcaaaggcatttgcccc------ctgaacaa------------------aagtcattcattaatagttcat--ttatctctctctttttaaa i panTro5.chr4 C 0 C 0 s panPan2.chr4 121091096 614 - 195804263 ATGAACTGAATTTAAATCATGTTTATTTATACTCCTTTTTCCAAGTTGCAAATTCACTGTTAAATTGAAGTCTGCCTATGCCCACACACGAATTTCAGCTCATAGTAACAAGAATTTATATGGCTTTGATATTTACTAGTGTTAGAT-------CCCTCTGGGCTAAAAGGATGTCAGTGAATTCAAGGTAATGTCATAAGCACAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAAAG-ATGATGAAAATACTTGTAATACAGCACTTTA-TTCTTAGGATATTCTGAAATGCTTTAT-ATCTTAAGATGTTTAAAAATCAATACTGCTTTTTACTTTATAGCTGGTTTACAAAACGTAGTACACATCCTTTAGAAGCT-AAAAAACAACAACTGTAAATCCAATTTACCCAAGCATATAAAAATTTTCACAG-AAGCAGAAAAGGTTCACCTAATATTTTAGGGACAGAAATCTATATCTATGTAATGGATCACTGAAGTCT--------GCTAGTGAAATGTAC------TAGTTCCTAATC--------ATTGCTGccccacgaaccctgtgttttcaaaggcatttgcccc------ctgaacaa------------------aagtcattcattaatagttcat--ttatctctctctttttaaa i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4520087 611 - 17550833 ATGAACTGAATTTAAATCATGTTTATTTATACTCCTTTTTCCAAGTTGCAAATTCACTGTTAAATTGAAGTCTGCCTATGCCCACACACGAATTTCAGCTCATAGTAACAAGAATTTATATGGCTTTGATATTTACTAGTGTTAGAT-------CCCTCTGGGCTAAAAGGATGTCAGTGAATTAAAGGTAATGTCATAAGCACAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAAAG-ATGATGAAAATACTTGTAATACAGCACTTTA-TTCTTAGGATATTCTGAAATGCTTTAT-ATCTTAAGATGTTTAAAAATCAATACTGCTTTTTACTTTATAGCTGGTTTACAAAACGTAGTACACATCCTTTAGAAGCT-AAAA---AACAACTGTAAATCCAATTTACCCAAGCATATAAAAATTTTCACAG-AAGCAGAAAAGGTTCACCTAATATTTTAGGGACAGAAATCTCTATCTATGTAATGGATCACTGAAGTCT--------GCTAGTGAAATGTAC------TAGTTCCTAATC--------ATTGCTGccccacgaaccctgtgttttcaaaggcatttgcccc------ctgaacaa------------------aagtcattcattaatagttcat--ttatctctctctttttaaa i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69392429 614 - 118206036 ATGAACTGAATTTAAATCATGTTTATTTATACTCCTTTTTCCAAGTTGCAAATTCACTGTTAAGTTGAAGTCTGCCTATGCCCACACACGAATTTCAGCTCATAGTAACAAGAATTTATATGGCTGTGATATTTACTAGTGTTAGAT-------CCCTCCGGGCTAAAAGGATGTCAGTGAATTCAAGGTAATGTCATAAGCATAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAAAG-ATGATGAAAATACTTGTAATACAGCACTTTA-TTCTTAGGATATTCTGAAATGCTTTAT-ATCTTAAAATGTTTAAAAATCAATACTACTTTTTACTTTATAGCTGGTTTATAGAACATAGTACACATCCTTTAGAAGCT-AAAAAACAACAACTGTAAATCCAATTTACCCAAGCATATAAAAATTTTCACAG-AAGCAGAAAAGGTTCACCTAATATTTTAGGGACAGAAATCTATATCTATATAATGGATCACTGAAGTCT--------GCTAGTGAAGTGTAC------TAGTTCCTAATC--------ATTGCTGCCCCATGAACCCTATGTTTTCAAAGGCATTTGCCTC------CTGAACAA------------------AAGTCATTCATTAATAGTTCAT--TTATCTCTCTCTTTTTAAA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111602932 605 - 190429646 ATGAACTGAATTTAAATCATGTTTATTTATACTCCTTTTTCCAAGTTGCAAATTCACTGTTAAGTTGAAGTCTGCCTATGCCCACACATGAATTTCAGGTCATAGTAACAAGAATTTATATGGCTGTGATATTTACTAGTGTTAGAT-------CCCTCCGGGCTAAAAGGATGTCAGTGAATTCAAGGTAATGTCATAAGCACAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAAAG-ATGATGAAAATACTTGTAATAGAG-----TA-TTCTTAGGATATTCTGAAATGCTTTAT-ATCTTAAAATGTTTGAAAATCAATACTGCTTTTTACTTTATAGCTGGTTTACAAAACATAGTACACATCCTTTAGAAGCT-AAAA---AACAACTGTAAATTCAATTTACCCAAGCATACAAAAATTTTCACAG-AAGCAGAAAAGATTCACCTAATCTTTTAGGGACAGAAATCTATATCTATGTAATGGATCACTGAAGTCT--------GCTAGTGAAGTGTAC------TAGTTCCTAATC---------TTGCTGccccatgaaccgtatgttttcaaaggcgtttgcctc------ctgaacaa------------------aagtcattcgttaatagtccat--ttatctctctctttttaaa i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110772144 605 - 189454096 ATGAACTGAATTTAAATCATGTTTATTTATACTCCTTTTTCCAAGTTGCAAATTCACTGTTAAGTTGAAGTCTGCCTATGCCCACACATGAATTTCAGGTCATAGTAACAAGAATTTATATGGCTATGATATTTACTAGTGTTAGAT-------CCCTCTGGGCTAAAAGGATGTCAGTGAATTCAAGGTAATGTCATAAGCACAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAAAG-ATGATGAAAATACTTGTAATAGAG-----TA-TTCTTAGGATATTCTGAAATGCTTTAT-ATCTTAAAATGTTTGAAAATCAATACTGCTTTTTACTTTATAGCTGGTTTACAAAACATAGTACACATCCTTTAGAAGCT-AAAA---AACAACTGTAAATTCAATTTACCGAAGCATACAAAAATTTTCACAG-AAGCAGAAAAGATTCACCTAATCTTTTAGGGACAGAAATCTATATCTATGTAATGGATCACTGAAGTCT--------GCTAGTGAAGTGTAC------TAGTTCCTAATC---------TTGCTGccccatgaaccgtatgttttcaaaggcgtttgcctc------ctgaacaa------------------aagtcattcgttaatagtccat--ttatctctctctttttaaa i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13339177 605 + 26754465 ATGAACTGAATTTAAATCATGTTTATTTATACTCCTTTTTCCAAGTTGCAAATTCACTGTTAAGTTGAAGTCTGCCTATGCCCACACATGAATTTCAGGTCATAGTAACAAGAATTTATATGGCTATGATATTTACTAGTGTTAGAT-------CCCTCCGGGCTAAAAGGATGTCAGTGAATTCAAGGTAATGTCATAAACACAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAAAG-ATGATGAAAATACTTGTAATAGAG-----TA-TTCTTAGGATATTCTGAAATGCTTTAT-ATCTTAAAATGTTTGAAAATCAATACTGCTTTTTACTTTATAGCTGGATTACAAAACATAGTACACATCCTTTAGAAGCT-AAAA---AACAACTGTAAATTCAATTTACCCAAGCATACAAAAATTTTCACAG-AAGCAGAAAAGATTCACCTAATCTTTTAGGGACAGAAATCTATATCTATGTAATGGATCACTGAAGTCT--------GCTAGTGAAGTGTAC------TAGTTCCTAATC---------TTGCTGccccatgaaccgtatgttttcaaaggcgtttgcctc------ctgaacaa------------------aagtcattcgttaatagtccat--ttatctctctctttttaaa i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4240024 610 - 5137665 ATGAACTGAATTTAAATCATGTTTATTTATACTCCTTTTAGCAAGTTGCAAATTCACTGTTAAGTTGAAGTCTGCCTATGCCCACACATGAATTTCAGGTCATAGTAACAAGAATTTATATGGCTGTGATATTTACTAGTGTTAGAT-------CCCTCCGGGCTAAAAGGATGTCAGTGAATTCAAGGTAATGTCATAAGCACAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAAAG-ATGATGAAAATACTTGTAATAGAGTACTTTA-TTCTTAGGATATTCTGAAATGCTTTAT-ATCTTAAAATGTTTAAAAATCAATACTGCTTTTTACTTTATAGCTGGTTTACAAAACATAGTACACATCCTTTAGAAGCT-AAAA---AACAACTGTAAATTCAATTTACCCAAGCATACAAAAATTTTCACAG-AAGCAGAAAAGATTCACCTAATCTTTTAGGGACAGAAATCTGTATCTATGTAATGGATCACTGAAGTCT--------GCTAGTGAAGTGTAC------TAGTTCCTAATC---------TTGCTGccccatgaaccgtatgttttcaaaggcgtttgcctc------ctgaacaa------------------aagtcattcattaatagtccat--ttatctctctctttttaaa i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122946399 610 - 135778131 ATGAACTGAATTTAAATCATGTTTATTTATACTCCTTTTTCCAAGTTGCAAATTCACTGTTAAGTTGAAGTCTGCCTATGCCCACACATGAATTTCAGGTCATCGTAACAAGAATTTATATGGCTGTGATATTTACTAGTGTTAGAT-------CCCTCCAGGCTAAAAGGATGTCAGTGAATTCAAGGTAATGTCATAAGCACAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAAAG-ATGATGAAAATACTTGTAATAGAGTACTTTA-TTCTTAGGATATTCTGAAATGCTTTAC-ATCTTAAAATGTTTAAAAATCAATACTGCTTTTTACTTTATAGCTGGTTTACAAAACATAGTACACATCCTTTAGAAGCT-AAAA---AACAACTGTAAATTCAATTTACCCAAGCATACAAAAATTTTCACAG-AAGCAGAAAAGATTCATCTAATCTTTTAGGGACAGAAATCTATATCTATGTAATGGATCACTGAAGTCT--------GCTGGTGAAGTGTAC------TAGTTCCTAATC---------TTGCTGccccatgaaccatatgttttcaaaggcgtttgcctc------ctgaacaa------------------aagtcattcattaatagtccat--ttatctctctctttttaaa i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2061992 610 + 2427316 ATGAACTGAATTTAAATCATGTTTATTTATACTCCTTTTTCCAAGTTGCAAATTCACTGTTAAGTTGAAGTCTGCCTATGCCCACACATGAATTTCAGGTCATAGTAACAAGAATTTATATGGCTGTGATATTTACTAGTGTTAGAT-------CCCTCCAGGCTAAAAGGATGTCAGTGAATTCAAGGTAATGTCATAAGCACAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAAAG-ATGATGAAAATACTTGTAATAGAGTACTTTA-TTCTTAGGATATTCTGAAATGCTTTAT-ATCTTAAAATGTTTAAAAATCAATACTGCTTTTTACTTTATAGCTGGTTTACAAAACATAGTACACATCCTTTAGAAGCT-AAAA---AACAACTGTAAATTCAATTTACCCAAGCATACAAAAATTTTCACAG-AAGCAGAAAAGATTCACCTAATCTTTTAGGGACAGAAATCTATATCTATGTAATGGATCACTGAAGTCT--------GCTAGTGAAGTGTAC------TAGTTCCTAATC---------TTGCTGccccatgaaccatatgttttcaaaggcgtttgcctc------ctgaacaa------------------aagtcattcattaatagtccat--ttacctctctctttttaaa i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1357313 573 + 1448899 ATGAACTGAATTT------------------------------------AAATTCACTGTCAAGTTGAAGTCTGCCTCTGCCCACACATGAATTTCAGGTCATAGTAACAAGAATTTATATGGCTGTGATATTTACTAGTGCTAGAT-------CTCTCCGGGCTAAAAGGTTGTCAGTGAATTCAAGGTAATGTCATAAGCACAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAA---ATGATGAAAATACTTGTAATAGAGTACTTTA-TTCTTAGGATATTCTGAAATGCTTTAT-ATCTTAAAATGTTTAAAAATCAATACTGCTTTTTACTTTATAGCTGGTTTACAAAACATAGTACATATCCTTTAGAAGCT-AAAA---AACAACTGTAAATTCAATTTACCCAAGCATACAAAAATTTTCACAG-AAGCAGAAAAGATTCACCTAATCTTTTAGGGACAGAAATCTATATCTATGTAGTGGATCACTGAAGTCT--------GCTAGTGAAGTGTAC------TAGTTCCTAATC--------ATTGCTGccccatgaaccatatgttttcaaaggtgtttgcctc------ctgaacaa------------------aagtcattcattaatagtccat--ctatctctctctttttaaa i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53059940 584 - 190850796 ATGAACTGAATTTAAATCATGTTTATTTATA---CTTTTTCCAAGTTGCAAATTCACTGTTAAGTTGAAGCCTGCCTATGCCCACACATGAATTTCAGCTCATAGTAACAAGAATTTAAATGGCTGTGATATTTACTAGTGTTAGAT-------CCCTCTGGGCTAAACCAA-GTTGGTGAATTCAAGGTAATGTCAGAAGCAGAG-------AAAACACTGACTTTTAGAAATATCTGGTGCCAAAGG-ATGATGAAAATACTTGTAATACAGCACTTTA-TTCTTAGGATATTCTGAAATGCTTTGT-ATCTTAAAACGTTTAAAAATCAATACTGCTTTTTACTTTATAGCTGGTTTACAAAACATAGTACACATCCTTTGGAAGCT-AAAAAACAACAGATGTAGATCCAATTTACCCAAGCATATAAAAATTTTCACAG-AAGCAGAAAAGGTTCACTTAATCCTTTAGGAATAGAAATCTATATCTATATAATGGAACACTGAAGTCT--------GCTAGGAAAGTGCAC------TAGTTCATAATG--------ATTGCTGCCCCATGAACCCTA------------------------------GAACAA------------------AAGTCATTCATTAATAGTTTAT--TTA--TCTCTCTTTTTAAA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8230409 591 - 15139346 ATTAACTGAATTTAAATCATGTTTATTTATACTCCTTTTTCCAAGTTGCAAATTCACTGTTAAGTTGAAGTCTGCCTATGCCCACACATGAATTTCAGCTCATAGTAACAAGAATTTAAATGGCTGTGATATTTACTAGTGTTAGAT-------CCCTCTGGGCTAAAAGGATGTTGGTGAATTCAAGGTAATGTCAGAAGCACAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAAGG-ATGATGAAAATACTTGTAATATGGCACTTTA-TTCTTAGGATATTCTGAAATGCTTTAT-ATCTTAAAATGTTTAAAAATCAATACTGCTTTTTACTTTATAGCTGGTTTACAAAACATAGTACACATCCTTTGGAAGCT-AAAAAACAACAAATGTAGATCCAATTTACCCAACCATATAAAAATTTTCACAGAAAGCAGAAAAGGGTCACTTAATCTTTTAGGAATAGAAATCTGTATCTATATAATGGAACACCGAAGTCT--------GCTAGGAAAGTGCAC------TAGTTCATAATG--------ATTGCTGCCCCATGAACCCTA------------------------------GAACAA------------------AAGTCATTCATTAATAGTTTAT--TTATCTCTCTCTTTTTAAA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7015785 591 - 7304997 ATGAACTGAATTTAAATCATGTTTATTTATATTCCTTTTTCCAAGTTGCAAATTCACTGTTAAGTTGAAGTCTGCCTATGCCCACACATGAATTTCAGCTCATAGTAACAAGAATTTAAATGGCCGTGATATTCGCTAGTGTTAGAT-------CCCTCTGGGCTAAAAGGATGTTGGTGAATTCAAGGTAATGTCAGAAGCACAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAAGG-ATGATGAAAATACTTGTAATACGGCACTTTA-TTCTTAGGGTATTCTGAAATGCTTTAT-ATCTTAAAATGTTTAAAAATCAATACTGCTTTTTACTTTATAGCTGGTTTACAAAACATAGTACACATCCTTTGGAAGCTAAAAAAACAACAAATGTAGATCCAATTTACCCAAGCACATAAAAATTTTCACAG-AAGCAGAAAAGGTTCACTTAATCTTTTAGGAATAGAAATCTATATCTATATAATGGAACACTGAAGTCT--------GCTAGGAAAGTGCAC------TAGTTCATAATG--------ATTGCTGCCCCATGAACCCTA------------------------------GAACGA------------------AAGTCATTCATTAATAGTTTAT--TTATCTCTCTCTTTTTAAA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9434261 588 - 11631747 ATGAACTGAATTTAAATCATGTTTATTTATACTCCTTTTTCCAAGTTGCAAATTCACTGTTAAGTTGAAGTCTGCCTATGCCCACACATGAATTTCAGCTTGTAGTAACAAGAATTTAAATGGCTGTGATATTTACTAGTGTTAGAT-------CCCTCTGGGCTAAAAGGATGTTGGTGAATTCAAGGTAATGTCAGAAGCACAG-------AAAACACTGACTTTTAGAAATGTCTGGTGCCAAAGG-ATGATGAAAATACTTGTAATATGGCAATTTA-TTCTTAGGATATTCTGAAATGCTTCAT-ATCTTAAAATGTTTAAAAATCAATACTGCTTTTTACTTTATAGCTGGTTTACAAAACATAGTACATATCCTTTGGAAGCT-AAAAAACAACAAATGCAGAACCAATTTACCCAAGCATATAAAAATTTTCACAG-AAGCAGAAAAGGTTCACTTAATCCTTTATGAATAGAAATCTGTATCTATATAATGGAACACTGAAGTCT--------GCTAGGAAAGTGCAC------TAGTTTATAATG--------ATTGCTGCCCCATGAACACTA------------------------------GAACAA------------------AAGTCATTCATTAATAATTTAT--TTA--TCTATCTTTTTAAA i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76457396 654 + 151834684 ATGAATTTAATTGAGGTCATGGTTAATCCCATTTCGTTGTTCAGATTCTAAGTTCATTGGTTAGTTCGGAT-TGCTCATAGC--------AATCTCAGCCCATAGCAACAAGAA-----ATTGTCATGATAATTATGAGGCTTGGCGACTGCCACCACCCAGGCAAAAATGATGTTGGTAGAGTCAA--CAATTCTGTGAACAGAGAAAAAAAAAAAAACTACCTTTGAGTTATGCCTGATGCCAAAAGAATGATG--GATACTGGTAATATAACACTTTATTTCTCAGAATACTCCAAAATGTTTTTT-ATCTTAAAATGTTCAAAAATCAATACTGCCTCTTATCATATTGCCAGCTTATAAAACATA-TA-ACCTCTTTAAAAGGCT-AAAA-ACAACAAATATAAATTCAGTATGCCTAAGCATATTAAATTTTTAACAG-AAACAGAATAGGTCTAACTGATCTCTTAGGAACAGAAATCCATGTCTACAAAATGGCTCACTGGGGTTCATGCAAAAATTAGTAAGTTAAACATTACAAAATTCTTAACAGGCCAAATATAACCGCTCCATAATCAAATTCTTCTCTCAAACACGTACCTCAAATGACTGAAAAACTGGGAACACAAAATAAGAACTCAAGAATTAATAACTCATGCTTA---CTTTCTCTTTAAA i mm10.chr5 I 3846 I 92 s canFam3.chr13 48038880 499 + 63241923 ATAAATTTAACCTCCATCATGTTTGTTTATACTAATTTTTCCAAGTTATAAATTCACTG-----TTGAGAACTATCTGTACCCACACAAGAATTTCAGCTCTTAGT---AAGAACTTCCATGGCTGTGATATTTACTAGGGTTAGAT-------TCTCCCAAGCTAAAACGGCATAGGTGGATTCAAGACAATTTGACAAGCACAG-------AAAATATTGACTTTTAGAACCATCTGATGCCAAA-G-ATGATG--AATACTTATAATACAGCACTTTATTTTTTAGGATACCCTGAAATGCTTCATAATCTTAAAATGTTTAAAAATCAATACCTCTTTTTACTTTATAGGTGGTTTACAAA---------ACATCCTTTAAAGGCT-AAAAAATGACAAATGTAAATCCAATTTACCTAAGTATATTAAAATTTTAATAG-AAGCAGAGAAGGTCCACCTACTCTCTCAGAGGCAGAAATACATATCTATATAACAGATCACTGAAGTTT--------GTT--CAAAGATTAG------TAAGTTAAA--------------------------------------------------------------------------------------------------------------------------------- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4135734 477 - 5279953 ATAAATTTAACTTAAATGATGTTTATTTACAATGCTTTTTCCAAGTTGTAA---------------GAGGATTGCCTGTACCCAGGCAAGAATTGCAGCTGGCAGTAGCAAGAATTTACATGGCTGTGATATTTACTAGTGTTGGAT-------CCC-CCAAATTGAAATGGAGAAAATGGATTCAAGGCAATGTTGTAAGCACAG-------AAAACATTCACTTTTAGAAATGTCTGATGCCAAAGG-ATGATG--GATATTAGTAATACAATACTTTA-TTCTTTAGATACTCTGAAATGTTTCAT-ATCTTAAAATGTATAAAAATCAATA-TCCTTTTGGCTTTTTAGCTGGTTTACAAA-CATATTACAC--CCTTTAGAGGGT-AAAAAACAATAAATGCAAATTCAATTTACTTGAGCATATTAAAATTTTAATAG-AAGCAGAAAAGGTCCACCTAATCCCTTAGGGACAGAAAGCCATATCTATATCATGAATCTCTGAAGATA--------GTTC----------------------------------------------------------------------------------------------------------------------------------------------------------- i dasNov3.JH568349 C 0 C 0 a score=1165964.000000 s hg38.chr4_KI270787v1_alt 110672 122 + 111943 attaaagacatatcttcctattaatcagtac--------ttttgatcagTTGTTAAATACATTAATTTATATTCAAAATTAATTATCTATCTCAAACA-CATTCCACAAAAAAATACACATATTAGGAACT-- s panTro5.chr4 119677881 122 - 194502333 attaaagacatatcttcctattaatcagtac--------ttttgatcagTTGTTAAATACATTAATTTATATTCAAAATTAATTATCTATCTCAAACA-CATTCCACAAAAAAATACACATATTAGGAACT-- i panTro5.chr4 C 0 C 0 s panPan2.chr4 121091710 121 - 195804263 attaaagacatatcttcctattaatcagtac--------ttttgatcagTTGTTAAATACATTAATTTATATTCAAAATTAATTATCTATCTCAAACA-CATTCCAC-AAAAAATACACATATTAGGAACT-- i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4520698 122 - 17550833 attaaagacatatcttcctattaatcagtac--------ttttgatcagTTGTTAAATACATTAATTTATATTCAAAATTAATTATCTATCTCAAACA-CATTCCACAAAAAAATACACATATTAGGAACT-- i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69393043 118 - 118206036 ATTAAAGACATGTCTTCCT----ATCAGTAC--------TTTTGATCAGTTGTTAAATACATTAATTTATATTCAAAATTAATTATCTATCTCAAACA-CATTCCACAAAAAAATACACATATTAGGAACT-- i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111603537 122 - 190429646 attaaagacatatcttcttatcaatcagtac--------ttttgatcagTTATTAAATACATTAATTTATATTGAAAATTAATTATCTCTCTCAAACA-TATTCCACAAAAAAATACACATATTAGGAACT-- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110772749 122 - 189454096 attaaagacatatcttcttatcaatcagtac--------ttttgatcagTTATTAAATACATTAATTTATATTGAAAATTAATTATCTATCTCAAACA-TATTCCACAAAAAAATACACATATTAGGAACT-- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13339782 122 + 26754465 attaaagacatatcttcttatcaatcagtac--------ttttgatcagTTATTAAATACATTAATTTATATTGAAAATTAATTATCTATCTCAAACA-TATTCCACAAAAAAATACACATATTAGGAACT-- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4240634 121 - 5137665 attaaagacatatcttcttatcaatcagtac--------ttttgatcagTTATTAAATACATTAATTTATATTGAAAATTAATTATCTATCTCAAACA-TATTCCAC-AAAAAATACACATATTAGGAACT-- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122947009 121 - 135778131 attaaagacatatgttcttatcaatcagtac--------ttttgatcagTTATTAAATACATTAATTTATATTGAAAATTAATTATCTATCTCAAACA-TATTCCAC-AAAAAATACACATATTAGGAACT-- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2062602 117 + 2427316 attaaagacatatcttcttatcaatcagtac--------ttttgatcagTTATTAAATACATTAATTTATATTGAAAATTAAT----TATCTCAAACA-TATTCCAC-AAAAAATACACATATTAGGAACT-- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1357886 121 + 1448899 attaaagacatatcttcttatcaatcagtac--------ttttgatcagTTATTAAATACATTTATTTATATTCAAAATTAGTTATGTATCTCAAACA-TATTCCCC-AAAAAATACACATATTAGGAACT-- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53060524 113 - 190850796 ---------ATATCTTCCTATCAATCAGTAC--------TTTTGATCAGTTATCaaataaattaatttatattcaaaattaattatCTATCTCAAACA-CATACCACAAAAAAATACACATATCAGGAACT-- i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8231000 118 - 15139346 ATTAAACACATATCTTCCTATCAATCAGTAC--------TTTTGATCAGTTATC----aaattaatttatattcaaaattaattatCTATCTCAAACA-CATATCACAAAAAAATACACATATCAGGAGCA-- i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7016376 114 - 7304997 ATTAAACACATATCTTCCTATCAATCAGTAC--------TTTTGATCAGTTATCAAATAAATTAATTTATATTCAA----AATTATCTATCTCAAACA-CGTATCACAAAAAAAT----ATATCAGGAATG-- i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9434849 118 - 11631747 ATTAAACACATATCTTCCTATCAATCAGTAC--------TTTTGATCAGTTATC----AAATTAATTTATATTCAAAATTAATTATCTATCTCAAACA-CATACCACAAAAAAATACACATATCAGAAATG-- i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48039379 97 + 63241923 ATTACAGA--------------AAACA------------TTTTAATAGGC--ttaaataaatttatttttattCAAAATCAAT----GATCTCAAATA-CATACCTC-AAATGTGACACATAGTATTACCC-- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4136211 116 - 5279953 ---AAAGA------------TTAGTAAGTACAGAAAACATCTTAATAGGCT-TTAAATAAATTGATTTATATTCAAAAGCATTTCTTTATCTCAAACAGCATACTTC-AAAAAATATAAAACTGGTGGACATT i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76458050 92 + 151834684 I a score=2090735.000000 s hg38.chr4_KI270787v1_alt 110794 189 + 111943 CAAGGATCAAGATTTCTTTAATCAGTGTACAAAA--TACATGAAAGGAAAGAACTGCTTCATTAGACC-------------------AAAGAAAATAGAAATACCCCAACCACCTTTATTTAATGCCATTTTGTTTTCTAAAACACTAAAACTAAAGGAAGGATT-AAGAGAGT----AGAAATGTAAGAAAAATAATTTGACATGATGTTTTTT s panTro5.chr4 119678003 188 - 194502333 CAAGTATCAAGATTTCTTTAATCAGTGTACAAAA--TACATGAAAGGAAAGAACTGCTTCATTAGACC-------------------AAAGAAAATAGAAATATCCCAACCACCTTTATTTAATGCCA-TTTGTTTTCTAAAACACTAAAACTTAAGGAAGGAAT-AAGAGAGT----AGAAATGTAAGAAAAATAATTTGACATGATGTTTTTT i panTro5.chr4 C 0 C 0 s panPan2.chr4 121091831 189 - 195804263 CAAGGATCAAGATTTCTTTAATCAGTGTACAAAA--TACATGAAAGGAAAGAACTGCTTCATTAGACC-------------------AAAGAAAATAGAAATATCCCAACCACCTTTATTTAATGCCATTTTGTTTTCTAAAACACTAAAACTAAAGGAAGGATT-GAGAGAGT----AGAAATGTAAGAAAAATAATTTGACATGATGTTTTTT i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4520820 189 - 17550833 CAAGGATCAAGATTTCTTTAATCAGTGTACAAAA--TACATGAAAGGAAAGAACTGCTTCATTAGACC-------------------AAAGAAAATAGAAATATCCCAACCACCTTTATTTAATGCCATTTTGTTTTCTAAAACACTAAAACTAAAGGAAGGATT-AAGAGAGT----AGAAATGTAAGAAAAATAATTTGACATGATGTTTTTT i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69393161 188 - 118206036 CAAGGATCAGTATTTCTTTAATCAGTGTACAAAA--CACATGAAAGGAAAGAACTGCTTCAGTAGACG-------------------AAAGAAAATAGAAATATCCCAACCACCTTTATTTAATTCCATTTTGTTTTCTAAAACACTAAAACTAAAGGAAGGATT-AAGAGAGT----A-AAATGTAAGAAAAATAATTTGACATGACttttttt i nomLeu3.chr9 C 0 I 2596 s rheMac8.chr5 111603659 188 - 190429646 CAAGGATCAATATTCCTTTAACCAATGTACAAAA--TACATGAAAGGGAAGAACTGCTTCATTAGACC-------------------AAAGAAAACAGAAATATCCCAACCACCTTTATTTAATGCCATTTTGTTTTCTAAAACACTAAAACTAAAGGAAGGATT-AAGAGCGT----ACACACGTGAGAAAAATAATTTGGCATGACTTTTTT- i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110772871 188 - 189454096 CAAGGATCAATATTCCTTTAACCAATGTACAAAA--TACATGAAAGGGAAGAACTGCTTCATTAGACC-------------------AAAGAAAATAGAAATATCCCAACCACCTTTATTTAATACCATTTTGTTTTCTAAAACACTAAAACTAAAGGAAGGATT-AAGAGAGT----ACACACGTGAGAAAAATAATTTGGCATGACTTTTTT- i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13339904 188 + 26754465 CAAGGATCAATATTCCTTTAACCAATGTACAAAA--TACATGAAAGGGAAGAACTGCTTCATTAGACC-------------------AAAGAAAATAGAAATATCCCAACCACCTTTATTTAATACCATTTTGTTTTCTAAAACACTAAAACTAAAGGAAGGATT-AAGAGAGT----ACACACGTGAGAAAAATAATTTGGCATGACTTTTTT- i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4240755 188 - 5137665 CAAGGATCAATATTCCTTTAACCAATGTACAAAA--TACATGAAAGGGAAGAACTGCTTCATTAGACC-------------------AAAGAAAATAGAAATATCCCAACCACCTTTATTTAATACCATTTTGTTTTCTAAAACACTAAAACTAAAGGAAGGATT-AAGAGAGT----TCACACGTGAGAAAAATAATTTGGCATGACTTTTTT- i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122947130 188 - 135778131 CAAGGATCAATATTCCTTTAACCAATGTACAAAA--TACATGAAAGGGAAGAACTGCTTCATTAGACC-------------------AAAGAAAATAGAAATATCCCAACCACCTTTATTTAATACCATTTTGTTTTCTAAAACACTAAAACTAAAGGAAGGATT-AAGAGAGT----ACACACGTGAGAAAAACAATTTGGCATGACTTTTTT- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2062719 188 + 2427316 CAAGGATCAATATTCCTTTAACCAATGTACAAAA--TACATGAAAGGGAAGAATTGCTTCATTAGACC-------------------AAAGAAAATAGAAATATCCCAACCACCTTTATTTAATACCATTTTGTTTTCTAAAACACTAAAACTAAAGGAAGGATT-AAGAGAGT----TCACATGTGAGAAAAATAATTTGGCATGACTTTTTT- i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1358007 187 + 1448899 CAAGGATCAATATTCCTTTAACCAATGTACAAAA--TACATGAAAGGGAAAAACTGCTTCATTAGACC-------------------AAAGAAAATAGAAATATCCCCACCACCTTTATTTAATACCATTTTGTTTTCTAAAACACTAAAACT-AAGGAAGGATT-AAGAGAGT----ACACACATAAGAAAAATAATTTGGCATGACTTTTTT- i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53060637 186 - 190850796 CAAGAATAAATATTTCTTTAATCAATGTATGAAA--TACATGAAAGGAAAGAACTGCTTCACTAGACC-------------------AAAGAAAATAGAAATATCCCAACAACCTTTATTTAATCCCATTTTGTTTTCTAAAACATTAAAACTAAAGGAAGGATT-AAGAG--T----ATAAATGTAAGAAAAACAATTCGGCATGATGTTGTT- i calJac3.chr3 C 0 I 1 s saiBol1.JH378162 8231118 188 - 15139346 CAAGAATAAATATTTCTTTAATCAATGTACGAAA--TACATGAAAGGAAATAACTGCTTCACTAGACC-------------------AAAGAAAATAGAAATATCCCAACCACCTTTATTTAGTCCAATTTTGTTTCCTAAAACATTAAAACTAAAGGAAGGATT-AAGAGAAT----AGAAATCTAAGAAAAATAATTCGGCATGGTGTTGTT- i saiBol1.JH378162 C 0 I 1 s cebCap1.NW_016107439v1 7016490 188 - 7304997 CAAGAATAAATATTTCTTTAATCAATGTATGAAA--TACATGAAAGGAAAGAACTGCTTCACTAGACC-------------------AAAGAAAATATAAATATCCCAACCACCTTTATTTAATCCCATTTTGTTTTCTAAAACATTAAAACTAAAGGAAGGATT-AAGAGAGC----AGAGATCTAAGAAAAATAATTCGGCATGATGTTGTT- i cebCap1.NW_016107439v1 C 0 I 1 s aotNan1.NW_018493494v1 9434967 188 - 11631747 CAAGAATAAATATGTCTTTAATCAATGTACAAAA--TACATGAAAGGAAAGAACTGCTTCACTAGACC-------------------AAAGAAAATAGAAATATCCCAACCACCTTTATTTAATCCTATTTTGTTTTCTAAAACATTAAAACTAAAGGAAGGATT-AAGAGAGT----AGAAATGTAAGAAAAATAATTCGGCATGATGTCGTT- i aotNan1.NW_018493494v1 C 0 I 1 s mm10.chr5 76458142 173 + 151834684 cAAGGAGTAATATTTCTTTAATCAATGTTTAGAA--TTAATGAAA-AAAATTGTTGCTTCACTAGATC-------------------AAAAAATATA-----------------TTTAGTTA-CCTCATTTTGTGT-ATAAATCTTAAAAATCATGGCAAGGATCGGATAGAATCCACAGAGATGTGAGGAAATCAGTCTAACACGATGCTGGA- i mm10.chr5 I 92 I 1 s canFam3.chr13 48039476 194 + 63241923 CAAAGATAAATATTTCTTTAATCAATGGATAAAA--TAAATGAAAGAAAAGAACAGCTTCACCAAACCAAAAGaaaatataaatataaaagaaaatataaatattCCAACCCTCTT-------------TTTGTTTCCTAAAATCTAAAAATCAAGACAAGGATT-AGGAGCAT----AGAAATATAAGAAAAATAATTTGGCATTATGCTTTT- i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4136327 184 - 5279953 TAGTAATTAATATTTCTTTAATCA-TGTATGAAAATAAAATGATATAAAAGAATTGCCTCACTAGACA------------------GAAAGAAAATGAATATATCCCAACCACCTTTATTTAATCACTGTTTTCCCCAAAAAACCATAAAATTATACCAAAGGTC-AAGAAAGC----AGAAGTT----AAAAAGAATTTGACATTTTTTTT--- i dasNov3.JH568349 C 0 C 0 a score=9644.000000 s hg38.chr4_KI270787v1_alt 110983 1 + 111943 A s panTro5.chr4 119678191 1 - 194502333 A i panTro5.chr4 C 0 C 0 s panPan2.chr4 121092020 1 - 195804263 A i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4521009 1 - 17550833 A i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69395945 1 - 118206036 A i nomLeu3.chr9 I 2596 C 0 s rheMac8.chr5 111603847 1 - 190429646 A i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110773059 1 - 189454096 A i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13340092 1 + 26754465 A i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4240943 1 - 5137665 A i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122947318 1 - 135778131 A i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2062907 1 + 2427316 A i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1358194 1 + 1448899 A i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53060824 1 - 190850796 A i calJac3.chr3 I 1 C 0 s saiBol1.JH378162 8231307 1 - 15139346 A i saiBol1.JH378162 I 1 C 0 s cebCap1.NW_016107439v1 7016679 1 - 7304997 A i cebCap1.NW_016107439v1 I 1 C 0 s aotNan1.NW_018493494v1 9435156 1 - 11631747 A i aotNan1.NW_018493494v1 I 1 C 0 s mm10.chr5 76458316 1 + 151834684 T i mm10.chr5 I 1 C 0 s canFam3.chr13 48039670 1 + 63241923 A i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4136511 1 - 5279953 G i dasNov3.JH568349 C 0 C 0 a score=78353.000000 s hg38.chr4_KI270787v1_alt 110984 6 + 111943 TAGTGt s panTro5.chr4 119678192 6 - 194502333 TAGTGt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121092021 6 - 195804263 TAGTGt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4521010 6 - 17550833 TAGTGt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69395946 6 - 118206036 TAGTGt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111603848 6 - 190429646 TAGTGt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110773060 6 - 189454096 TAGTGt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13340093 6 + 26754465 TAGTGt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4240944 6 - 5137665 TAGTGt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122947319 6 - 135778131 TAGTGt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2062908 6 + 2427316 TAGTGt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1358195 6 + 1448899 TAGTGt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53060825 6 - 190850796 CAGTGt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8231308 6 - 15139346 TAGTGt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7016680 6 - 7304997 TAGTGt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9435157 6 - 11631747 TAGTGt i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76458317 6 + 151834684 TTGTGT i mm10.chr5 C 0 C 0 s dasNov3.JH568349 4136512 6 - 5279953 TAGTAT i dasNov3.JH568349 C 0 C 0 e canFam3.chr13 48039671 0 + 63241923 C a score=88298.000000 s hg38.chr4_KI270787v1_alt 110990 9 + 111943 gatatggtt s panTro5.chr4 119678198 9 - 194502333 gatatggtt i panTro5.chr4 C 0 C 0 s panPan2.chr4 121092027 9 - 195804263 gatatggtt i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4521016 9 - 17550833 gatatggtt i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69395952 9 - 118206036 ggtagggtt i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111603854 9 - 190429646 gatatggtt i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110773066 9 - 189454096 gatatggtt i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13340099 9 + 26754465 gatatggtt i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4240950 9 - 5137665 gatatggtt i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122947325 9 - 135778131 gatatggtt i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2062914 9 + 2427316 gatatggtt i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1358201 9 + 1448899 gatatgatt i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53060831 9 - 190850796 gatgtggtt i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8231314 9 - 15139346 gatgtcgtt i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7016686 9 - 7304997 gatgtggtt i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9435163 9 - 11631747 gatgtggtt i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76458323 9 + 151834684 TAGCTGGTT i mm10.chr5 C 0 I 1 e dasNov3.JH568349 4136518 0 - 5279953 C e canFam3.chr13 48039671 0 + 63241923 C a score=3246438.000000 s hg38.chr4_KI270787v1_alt 110999 346 + 111943 tgtctctgtttcctgacccaaatctcatcttgaattgtaa--tccccccatgtcaagggagggaggtgattggatcatgggggcagttcccccatgctgttctcgtgagag-gagtgagttctcaagagatctgacggttgta----taagt---gtttggcatttcccctgcttgcacgtctctcacctgccaccttg----taaagaaggtgcctgcttcccctacaccttctgccatgatta-taagttcctgaggcctccctagccatgcagaactgtgagtcaattaaa-ctctttcctttataaattacccggtctcaggtatttctttttagcagtgtgaaaatgcactaataca s panTro5.chr4 119678207 346 - 194502333 tgtctctgtttcctgacccaaatctcatcttgaattgtaa--tccccccatgtcaagggagggaggtgattggatcatgggggcagttcccccatgctgttctcgtgagag-gagtgagttctcaagagatctgacggttgta----taagt---gtttggcatttcccctgcttgcacgtctctcacctgccaccttg----taaagaaggtgcctgcttcccctacaccttctgccatgatta-taagttcctgaggcctccctagccatgcagaactgtgagtcaattaaa-ctctttcctttataaattacccggtctcaggtatttctttttagcagtgtgaaaatgcactaataca i panTro5.chr4 C 0 C 0 s panPan2.chr4 121092036 346 - 195804263 tgtctctgtttcctgacccaaatctcatcttgaattgtaa--tccccccatgtcaagggagggaggtgattggatcatggaggcacttcccccatgctgttctcgtgagag-gagtgagttctcaagagatctgacggttgta----taagt---gtttggcatttcccctgcttgcacgtctctcacctgccaccttg----taaagaaggtgcctgcttcccctacaccttctgccatgatta-taagttcctgaggcctccctagccatgcagaactgtgagtcaattaaa-ctctttcctttataaattacccggtctcaggtatttctttttagcagtgtgaaaatgcactaataca i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4521025 346 - 17550833 tgtctctgtttcctgacccaaatctcatcttgaattgtaa--tccccccatgtcaagggagggaggtgattggatcatgggggcagttcccccatgctgttctcgtgagag-gagtgagttctcaagcgatctgacggttgta----taagt---gtttggcatttcccctgcttgcacgtctctcacctgccaccttg----taaagaaggtgcctgcttcccctacaccttctgccatgatta-taagttcctgaggcctccctagccatgcagaactgtgagtcaattaaa-ctctttcctttataaattacccggtctcaggtatttctttttagcagtgtgaaaatgcactaataca i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69395961 351 - 118206036 tgtctctgtttcctgacccaaatctcatctcgaattgtaa--tccccccatgtcaagggagagagataattggatcatgggggcagttcccccatgctcttctcatgagag-gagtgagttctcatgagatctgatggttgtatccctaagt---gtttggcatttcccctgcttgaacgtctctcacctgccacattg----tgaagaaggtgcctgcttcccctacaccttctgccatgatta-taagtttctgaggcctccctagccatgcagaactgtgagtcaattaaatctctttcctttataaattacctggtctcaggtatttctttttagcagtgtgaaaatgcactaataca i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111603863 341 - 190429646 tgtctctgtttcttgacc-----ctcatctcaaattgtaa--tccccacatgtcaagggagagaggtgactggatcatgggggcagttcccccatgctgttctcatgagag-gagtgtgttctcacgagatctgatggttgta----taagt---gtctggcatttcccctgcttgcacttctctcacctgctgccttg----tgaagaa-gtgcctggttcccctacaccttctgccatgattg-taagtttctgaggcctccctagccatgcagaactgtgagccaattaaacctctttcctttataaattacctggtctcaggtatttctttatagcagtgtgaatatgcactaataca i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110773075 341 - 189454096 tgtctctgtttcttgacc-----ctcatctcaaattgtaa--tccccacatgtcaagggagagaggtgactggatcatgggggcagttcccccatgctgttctcatgagag-gagtgtgttctcacgagatctgatggttgta----taagt---gtctggcatttcccctgcttgcacttctctcacctgctgccttg----tgaagaa-gtgcctggttcccctacaccttctgccatgattg-taagttcctgaggcctccctagccatgcagaactgtgagccaattaaacctctttcctttataaattacctggtctcaggtatttctttatagcagtgtgaatatgcactaataca i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13340108 341 + 26754465 tgtctctgtttcttgacc-----ctcatctcaaatcgtaa--tccccacatgtcaagggagagaggtgactggatcatgggggcagttcccccatgctgttctcatgagag-gagtgtgttctcacgagatctgatggttgta----taagt---gtctggcatttcccctgcttgcacttctctcacctgctgccttg----tgaagaa-gtgcctggttcccctacaccttctgccatgattg-taagttcctgaggcctccctagccatgcagaactgtgagccaattaaacctctttcctttataaattacctggtctcaggtatttctttatagcagtgtgaatatgcactaataca i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4240959 341 - 5137665 tgtctctgtttcctgacc-----ctcatctcaaattgtaa--tccccacatgtcaagggagagaggcgactggatcatgggggcagttcccccatgctgttctcatgagag-gagtgtgttctcacgagatctgatggttgta----taagt---gtctggcatttcccctgcttgcacttctctcacctgctgccttg----tgaagaa-gtgcctggttcccctacaccttctgccatgattg-taagttcctgagacctccctagccatgcagaactgtgagccaattaaacctctttcctttataaattacctggtctcaggtatttctttatagcagtgtggatatgcactaataca i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122947334 343 - 135778131 tgtctctgtttcctgacc-----atcatctcaaattgtaatctccccacatgtcaagggagagaagtgactggatcatgggggcagttcccccatgctgttctcgtgagag-gagtgtgttctcacgagatctgatggttgca----taagt---gtctggcatttcccctgcttacatttctctcacctgctgccttg----tgaagaa-gtgcctggtttccctacaccttctgccatgattg-taagttcctgaggcctccctagccatgcagaactgtgagccaattaaacctctttcctttataaattacctggtctcaggtatttctttagagcagtgtgaatatgcactaataca i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2062923 341 + 2427316 tgtctctgtttcctgacc-----ctcatctcaaattgtaa--tccccacatatcaagggagagaggcgactggatcatgggggcagttcccccatgctgttctcgtgagag-gagtgtgttctcacgagatctgatggttgta----taagt---gtctggcatttcccctgcttgcacttctctcacctgctgccttg----tgaagaa-gtgcctggttcccctacaccttctgccatgattg-taagttcctgagacctccctagccatgcagaactgtgagccaattaaacctctttcctttataaattacctggtctcaggtatttctttatagcagtgtgaatatgcactaataca i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1358210 341 + 1448899 tgtctctgtttcctgacc-----ctcatctcgaattgtaa--tccccacatgtcaagggagcgaggtgattggatcatgggggcagttcccccatgctgttctcatgagag-gagtgtgttctcacgagatctgacggttgta----taagt---gtctggcatttcccctgcttgcacttctctcacctgctgccttg----tgaagaa-gtgcctgcttcccctacaccttctgccatgattg-taagtttctgaggcctccctagccatgcagaactgtgagccaattaaacctctttcctttataaattacctggtctcaggtatttctttatagcagtgtgaaaatgtactaataca i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53060840 352 - 190850796 tttctttgtttcttgacccaaatctcatctcaagttgtaa--tcctcacatgtcaagggagggagatgactggatcatgggggcagctacccgctgctgttctcatgatagtgagtgagttctcatgagatctgatggttgtt----taagtagcatctgacatttaccctgcttgcacttctctcacctgccgccttg----tgaagacggtgcctgtttcccctacaccttctgccgtgattgttaagctcctgaggcctccctcaccatgcagaactgtgagtcaattaaacctctttcctttataaattacccagtctcagctatttctttatagcaatgtgaaaaggcactaataca i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8231323 332 - 15139346 tttctctgtttcttgacccaaatttcatctcaagttgtaa--tccccgaatgtcaagggaggaagatgattggatcatgggggcagctcccccatgct--------------------gttctcatgagatctgatggttgta----taagcagcatctggcatttcccctgcttgcacttctctcacctgccaccttg----tgaaaatggtgcctgcttcgtctacaccttctgccatgattgttaagctcctgaggcctccctcaccatgcagaactgtgagtcaattaaacatttttcctttataaattacccagtctcagctatttctttatagcaatgtgaaaatgcactaattca i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7016695 356 - 7304997 ttcctctgtttcttgacccaaatctcatctcaagttgtaa--tctccacatgtcaagggcaggagatgattggatcatgggggcagctcccccatgctgttctcctgatagtgagtgagttctcatgagatctgatggttgta----taagcagcgtctggcatttcccctgcttgcacttctctcacctgccaccttgtgaatgaagacggtgcctgcttcccctacatcttctgccatgattgttaagctcctgaggtctccctccccatgcagaactgtgagtcaattaaacctctttcctttacaaattacccagtctcagctatttctttatagcaatgtgaaaatgcactaataca i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9435172 348 - 11631747 tttc--tgtttcttgacccaaatctcatctcaagttgtaa--tcctcacatgtcaagggagggagatgattggatcatgggggcagctccgccatgctgttctcatgatagtgagtgagttctcataagatctgatggttgta----taagcagcatctggcatttcccctgcttgcacttctctcacctgccgccttg----tgaagacggtgcctgcttc--cttcaccttctgccatgattgttaagctcctgaggcctccctcaccatgcagaactgtgagtcaattaaatctctttcctttataaattacccagtctcagctatttctttacagcaatgtgaaaatgcactaataca i aotNan1.NW_018493494v1 C 0 C 0 e mm10.chr5 76458332 1 + 151834684 I e dasNov3.JH568349 4136518 0 - 5279953 C e canFam3.chr13 48039671 0 + 63241923 C a score=45773.000000 s hg38.chr4_KI270787v1_alt 111345 6 + 111943 TAGTGC s panTro5.chr4 119678553 6 - 194502333 TAGTGC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121092382 6 - 195804263 TAGTGC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4521371 6 - 17550833 TAGTGC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69396312 6 - 118206036 TAGTGC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111604204 6 - 190429646 GAGTGC i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110773416 6 - 189454096 GAGTGC i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13340449 6 + 26754465 GAGTGC i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4241300 6 - 5137665 GAGTGC i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122947677 6 - 135778131 GAGTGC i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2063264 6 + 2427316 GAGTGC i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1358551 6 + 1448899 GAGTGC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53061192 6 - 190850796 TAAAGC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8231655 6 - 15139346 TAAAGC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7017051 6 - 7304997 TAAAGC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9435520 6 - 11631747 TAAAGC i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48039671 6 + 63241923 TAGTGC i canFam3.chr13 C 0 C 0 e mm10.chr5 76458332 1 + 151834684 I e dasNov3.JH568349 4136518 0 - 5279953 C a score=98789.000000 s hg38.chr4_KI270787v1_alt 111351 9 + 111943 TAGCCTGTA s panTro5.chr4 119678559 9 - 194502333 TAGCTTGTA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121092388 9 - 195804263 TAGCCTGTA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4521377 9 - 17550833 TAGCCTGTA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69396318 9 - 118206036 TAGCCTGTA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111604210 9 - 190429646 TAGCCTGTA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110773422 9 - 189454096 TAGCCTGTA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13340455 9 + 26754465 TAGCCTGTA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4241306 9 - 5137665 TAGCCTGTA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122947683 9 - 135778131 TAGCCTGTA i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2063270 9 + 2427316 TAGCCTGTA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1358557 9 + 1448899 TAGCCTGTA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53061198 5 - 190850796 TA----GTA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8231661 9 - 15139346 TAGTCTGTA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7017057 9 - 7304997 AAGTCTGTA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9435526 9 - 11631747 TAGTCTGTA i aotNan1.NW_018493494v1 C 0 C 0 s canFam3.chr13 48039677 9 + 63241923 TAACCTGTA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4136518 9 - 5279953 TAATCTGTA i dasNov3.JH568349 C 0 C 0 e mm10.chr5 76458332 1 + 151834684 I a score=3731523.000000 s hg38.chr4_KI270787v1_alt 111360 324 + 111943 TTTGCTTAAAATAATAAAATAAAAGCATAATTGGATA------------------------GTATTGGAATAATCATATATCAGAAAAACATC--------------TTTTTTTTTTAACCTCTCTGAGA-TTTTCTTGGCTTCTTAGATTAGGTTGAATGAACAACAATGTCTTCAGC-TTTTCAAAATCTTTGCTCTA-TAAAACAAAGTGTATTTACATTGAATGCATCTCACTTGTC-CCATGGACACAACTTCTTCTA-AAAACTTGGAAAGGATTTATTGCCTGTGGAACATG-AGGT----GTTATG------------------TTTAATTTTGCACATACATTTTGTTGAAATGACTTTAGGAAACAGATTTACTTAAAAC s panTro5.chr4 119678568 323 - 194502333 TTTGCTTAAAATAATAAAATAAAAGCATAATTGGATA------------------------GTATTGGAATAATCATATATCAGAAAAACATC------------TTTTTTTTTTTTAACCTCTCTGAGA-TTTTCTTGGCTTCTTAGATTAGGTTGAATGAACAACAATGTCTTCAGC-TTTTCAAAATCTTTGCTCTA-TAAAACAAAGTGTATTTACATTGAATGCATCTCACTTGTC-CCATGGACACAA---CTTCTA-AAAACTTGGAAAGGATTTATCGTCTGTGGAACATG-AGGT----GTTATG------------------TTTAATTTTGCACATACATTTTGTTGAAATGACTTTAAGAAACAGATTTACTTAAAAC i panTro5.chr4 C 0 C 0 s panPan2.chr4 121092397 325 - 195804263 TTTGCTTAAAATAATAAAATAAAAGCATAATTGGATA------------------------GTATTGGAATAATCATATATCAGAAAAGCATC-------------TTTTTTTTTTTAACCTCTCTGAGA-TTTTCTTGGCTTCTTAGATTAGGTTGAATGAACAACAATGTCTTCAGC-TTTTCAAAATCTTTGCTCTA-TAAAACAAAGTGTATTTACATTGAATGCATCTCACTTGTC-CCATGGACACAACTTCTTCTA-AAAACTTGGAAAGGATTTATCGCCTGTGGAACATG-AGGT----GTTATG------------------TTTAATTTTGCACATACATTTTGTTGAAATGACTTTAAGAAACAGATTTACTTAAAAC i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4521386 322 - 17550833 TTTGCTTAAAATAATAAAATAAAAGCATAACTGGATA------------------------GTATTGGAATAATCATATATCAGAAAAACATC-------------TCTTTTTTTTTAACCTCTCTGAGA-TTTTCTTGGCTTCTTAGATTAGGTTGAATGAACAACAATGTCTTCAGC-TTTTCAAAATCTTTGCTCTA-TAAAACAAAGTGTATTTACATTGAATGCATCTCACTTGTC-CCATGGACACAA---CTTCTA-AAAACTTGGAAAGGATTTATCGCCTGTGGAACATG-AGGT----GTTACG------------------TTTAATTTTGCACATACATTTTGTTGAAATGACTTTAAGAAACAGATTTACTTAAAAC i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69396327 324 - 118206036 TTTGCTTAAAATAATAAAAGAAAAGCATAATCGGATA------------------------GTATTGGAATAATCATATATCAGAAAAACACC---------------TTTTTTTTTAACCTCTCTGAGA-TTTTCTTGGCTCCTTAGATTAGGTTGAATGAACAACAATGTCTTCAGC-TTTTCAAAATCTTTGCTCTA-TAAAACAAAGTGTATTTATATTGAATGCATCCCACTTGTCACCATGGACAAAACTTCTTCTA-AAAACTAGGAAAGGATTTATCGCCTATGGAACATG-AGGC----GTTATA------------------TTTAATTTTGCACACACATTTTGTTGAAATGACTTTAAGAAACAGATTTACTTAAAAC i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111604219 339 - 190429646 TTTGCTTAAAATAATAAAAGAAAAGCATAATTGGATA------------------------GTATTGAAATAATCATATATCAGAAAAACATCtttttttttttttttttttttttttACCTCTCTGAGA-TTTTCTTGGCTTCTTAGATTAGGTTGAATGAACAACAATGTCTTCAGC-TTTTCAAAATCTTTGCTCTA-TAAAACAACGTGTATTTATATTGAATGCATCCCATTTGTCCCCATGGACACAATTTCTTCTA-AAAACTTGGAAAGGATTTATCGCCTGTGTAACATG-AGGT----ATTATG------------------TTTAATTTTGCACATACATTTTGTTGATGTGACTTTAAGAAACAGATTTACTTAAAAT i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110773431 336 - 189454096 TTTGCTTAAAATAATAAAAGAAAAGCATAATTGGATA------------------------GTATTGAAATAATCATATATCAGAAAAACATC---ttttttttttttttttttttttACCTCTCTGAGA-TTTTCTTGGCTTCTTAGATTAGGTTGAATGAACAACAATGTCTTCAGC-TTTTCAAAATCTTTGCTCTA-TAAAACAACGTGTATTTATATTGAATGCATCCCATTTGTCCCCATGGACACAATTTCTTCTA-AAAACTTGGAAAGGATTTATCGCCTGTGTAACATG-AGGT----ATTATG------------------TTTAATTTTGCACATACATTTTGTTGATGTGACTTTAAGAAACAGATTTACTTAAAAT i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13340464 334 + 26754465 TTTGCTTAAAATAATAAAAGAAAAGCATAATTGGATA------------------------GTATTGAAATAATCATATATCAGAAAAACATC-----ttttttttttttttttttttACCTCTCTGAGA-TTTTCTTGGCTTCTTAGATTAGGTTGAATGAACAACAATGTCTTCAGC-TTTTCAAAATCTTTGCTCTA-TAAAACAACGTGTATTTATATTGAATGCATCCCATTTGTCCCCATGGACACAATTTCTTCTA-AAAACTTGGAAAGGATTTATCGCCTGTGTAACATG-AGGT----ATTATG------------------TTTAATTTTGCACATACATTTTGTTGATGTGACTTTAAGAAACAGATTTACTTAAAAT i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4241315 324 - 5137665 TTTGCTTAAAATAATAAAAGAAAAGCATAATTGGATA------------------------GTATTGGAATAATCATATATCAGAAAAACATC---------------TTTTTTTTTTACCTCTCTGAGA-TTTTCTTGGCTTCTTAGATTAGGTTGAATGAACAACAATGTCTTCAGC-TTTTCAAAATCTTTGCTCTA-TAAAACAAAGTGTATTTATATTGAATGCATCCCATTTGTCCCCATGGACACAATTTCTTCTA-AAAACTTGGAAAGAATTTATCGCCTGTGTAACATG-AGGT----ATTATG------------------TTTAATTTTGCACATACATTTTGTTGACGTGACTTTAAGAAACAGATTTACTTAAAAT i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122947692 333 - 135778131 TTTGCTTAAAATAATAAAAGAAAAGCATAATTGGATA------------------------GTATTGGAATAATCATATATCAGAAAAACATC-------ttttttttttttttttttACCTCTCTGAGA-TTTTCTTGGCTTCTTAGATTAGGTTGAATGAACAACAATGTCTTCAGCTTTTTCAAAATCTTTGCTCTA-TAAAACAACGTGTATTTATATTGAATGCATCCCATTTGTCCCCATGGACACAATTTCTTCTA-AAAACTTGGAAAGGATTTATCGCCTGTGCAACATG-AGGT----ATTATG------------------TTTAATTTTGCACATACATTTTGTTGACATGACTTTAAGAAACAGATTTACTTAAAAT i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2063279 326 + 2427316 TTTGCTTAAAATAATAAAAGAAAAGCATAATTGGATA------------------------GTATTGGAATAATCATATATCAGAAAAACATC-------------TTTTTTTTTTTTACCTCTCTAAGA-TTTTCTTGGCTTCTTAGATTAGGTTGAATGAACAACAATGTCTTCAGC-TTTTCAAAATCTTTGCTCTA-TAAAACAACGTGTATTTATATTGAATGCATCCCATTTGTCCCCATGGACACAATCTCTTCTA-AAAACTTGGAAAGGATTTATTGCCTGTGTAACATG-AGGT----ATTATG------------------TTTAATTTTGCACATACATTTTGTTGACGTGACTTTAAGAAACAGATTTACTTAAAAT i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1358566 331 + 1448899 TTTGCTTAAAATAATAAAAGAAAAGCATAAGTGGATA------------------------GTATTGGAATAATCATATATCAGAAAAACATC--------tttttttttttttttttACCTCTCTGAGA-TTTTCTTGGCTTCTTAGATTAGGTTGAATGAACAACAATGTCTTCAGC-TTTTCAAAATCTTTGCTCTA-TAAAACAAAGTGTATTTATATTGAATGCATCCCACTTGTCCCCATGGACACAATTTCTTCTA-AAAACTTGGAAAGGATTTATCACCTGTGCAATATG-AGGT----ATTATG------------------TTTAATTTTGCACATACATTTTGTTGAAATGACTTTAAGAAACAGATTTACTTAAAAC i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53061203 315 - 190850796 TTTGCTTAAAATAATAAAAGAAAAGCATAATTGGATA------------------------TAATTTGAATAATCATGTATCAAAGAAATATT-------------------TTTTTAGTATCTCTGAGA-TTTTCTTGGCTTCTTAGA-----TTAAGTAAACAACAATGTCTTCAGC-TTTTCAAAATCTTTGCTCTA-TAAAACAAAGTGTATTTATATTGAATGCATCCCACTTGTCCCCATGGACACAGTTTCTTCTA-AAATCTTGGAAAGGATTTATAGCCTGGGGAATATG-AGGT----GTTACA------------------TTGAATTTTGCACACACATTTTGTTGAAATGACTATAAGAAACAGATTTACTTAATAC i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8231670 318 - 15139346 TTTGCTTAAAATAATAAAAGAAAAGCATAATTGGAT---------------------------ATTTGAATAATCATATATCAAAAAAATCTT-------------------TTTTTAGTATCTCTGAGA-TTTTCTTGGCTTCTTAGATTAGGTTAAGTGAACAACAATGTCTTCAGC-TTTTCAAAATCTTTGCTCTATTAAAACAAAGTGTATTTATATTGAATGCATCCCACTTGTCCCCATGGACAAAATTTCTTCTA-AAAACTTGGAAAGGATTTATAGCCTGGGGAACATG-AGGT----GTTATG------------------TTGAATTTTGCGCACACATTTTGTTGAAATGACTATAAGAAACAGATTTACTTAATAC i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7017066 317 - 7304997 TTTGCTTAAAATAATAAAAGAAAAGCATAATTGGAT---------------------------ATTTGAATAATCATATATCCAAAAAATCTT-------------------TTTTTAGTATCTCTGAGA-TTTTCTTGGCTTCTCAGATTAGGTTAAGTGAACAACAATGTCTTCAGC-TTTTCAAAATCTTTGCTCTA-TAAAACAAAGCGTATTTATATTGAATGTATCCCACTTGTCCCCATGGACACAATTTCTTCTA-AAAACTTGGAAAGGATTTATAGCCTGGGGAACATG-AGGT----GTTATG------------------TTGAATTTTGCACACACATTTTTTTGAAATGACTATAAGAAACAGATTTACTTAATAC i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9435535 308 - 11631747 TTTGCTTAAAATAAT-----AAAAGCATAATTGGATA------------------------ATATTTGAATAATCATATATCAAAAAAATCTT-------------------TTTTTAGTA--TCTGAGA-TTTTCTTGGCTTCTTAGT-----TTAAGTGAACAACAACGTCTTCAGC-TTTTCAAAATCTTTGCTCTA-TGAAACAAAGTGCATTTATATTGAATGCATCCCACTTGTCCCCATGGATACAATTTCTTCTA-AAAACTTGGAAAGGATTTATAGCCTGGAGAACATG-AGGT----GTTATG------------------TTGAATTTTGCACACACATTTTGTTGAAATGACTATAAGAAACAGATTTACTTAATAC i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76458333 318 + 151834684 TTTGCTCACAGGGAC---AGAGAAGCAAAATGGCACA------------------------GAACCGTGCTTTCTGTATCACAGAAAAACAAA-------------CATCTTCTTTCTTTATCTCCCAGA-TTTCCTCGGCTCCCTTGCATGGGTTGAATGTGCAGGAA-GTCTTCAGC-ATTTCAAATTCTTTGTTCTT-GTTTACA----TTGCTAACATTGATTGTACCCGAGTCGTCCCCATGGCCGTGTCTTC-TCTA-AAGATCTGAGAAGAAGTTCTAGGCTGGGAAAGAGG-AAAT----GTTGTGTGAC-TGTACTACTGACCTTTAACTCTGCGTGCAAACTTCGTTGA----------------AGGTTTGCTTGAGAC i mm10.chr5 I 1 C 0 s canFam3.chr13 48039686 349 + 63241923 TTTGTTTAAAATGAC---AGAAAAGCATAAT--GATAACATATTAGAATAATATGTTTCATATATTGGAATAATCATATATCAGAAAAAAATC-----------TTTTTTATTTCTTTACCTCTCTGAGATTTTTCTTGGCTTCTT----TGGGCTGAATGAACATCAGTACTTTCAGC-TTTTTGAAATCTTTGCTCTG-TAAAACAAAGTGTATTTACATTGAATGCATTCTTCCTGTACCCATATACACAATTTCTTCTA-AAAATTTGGATAGGATTTATAGCCTAGGGAACATGTTATT----TTTATGTAAT--------------TTTAACTTTACACATAAACTTTGCTGAAATAACTTTAAGAAATAGATTTACTTAAAAC i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4136527 332 - 5279953 TCTGCTTA---TAATAGACAAAATGCATAACTGGGTA------------------------ACATTGGAATAATCATGTACCAGGAAAATACT-------------------TATTTTACCTCTTTGATA-TTTTCTTGGTTTCTTTGCTTAGGTTGAATGAGCAACAATGTTTTCAGC-TTTTCAAAATCCTTGCTCTA-TAAAACTAAGTATATTTATATTGAATGCATCCTATCAGTCTTCATGGACTCAATTTCTTCTAGAAAATTTTGAAAGGA-TTATAGCTCACAGAACATG-GAGTTATATTTATGTAGTATTGACT-------TTTTAATCTGCACATAAACTTTGTTGAAATAACTTTAAGAAACAGATTTGCTTAAAAC i dasNov3.JH568349 C 0 I 225 a score=2061530.000000 s hg38.chr4_KI270787v1_alt 111684 171 + 111943 AATTGAAGCACCAAGCACGGA----ATTCACTGGTCATGTTATAGATAGACAAGTTTAATTATAACTAA-GACAATAGGCCCATTATAATAAATTGAGAGTTGTTTGC--ATAATGAAATGCTATTTCTTGAGTT-ATGATTATGATTTACCCTATGAATATAGCTTAATTTCAGATCA s panTro5.chr4 119678891 171 - 194502333 AATTGAAGCACCAAGCATGGA----ATTCACTGGTCATGTTACAGATAGACAAGTTTAATTATAACTAA-GACAATAGGCCCATTATAATAAATCGAGAGTTGTTTGC--ATAATGAAATGCTATTTCTTGAGTT-ATGATTATGATTTACCCTATGAATATAGCTTAATTTCAGATCA i panTro5.chr4 C 0 C 0 s panPan2.chr4 121092722 171 - 195804263 AATTGAAGCACCAAGCACGGA----ATTCACTGGTCATGTTATAGATAGACAAGTTTAATTATAACTAA-GACAATAGGCCCATTATAATAAATTCAGAGTTGTTTGC--ATAATGAAATGCTATTTCTTGAGTT-ATGATTATGATTTACCCTATGAATATAGCTTAATTTCAGATCA i panPan2.chr4 C 0 C 0 s gorGor5.CYUI01014963v1 4521708 171 - 17550833 AATTGAAGCACCAAGCACGGA----ATTCACTGGTCATGTTATAGACAGACAAGTTTAATTATAACTAA-GACAATAGGCCCATTATAATAAATTGAGAGTTGTTTGC--ATAACGAAATGCTATTTCTTGAGTT-ATGATTATGATTTACCCTATGAATATAGCTTAATTTCAGATCA i gorGor5.CYUI01014963v1 C 0 C 0 s nomLeu3.chr9 69396651 171 - 118206036 AATTGAAGCACCAAGCATGGA----ATTCATTGGTCGTGTTATAAATAGACAAGTTTAATTATAACTAA-GACAATAGGCCCATTATAATAAATTGAGAGTTGTTTGC--ATAATAAAATGCTATTTCTTGAATT-ATGATTATGATTTACCCTATGAATATAGCTTAATTTCAGATCA i nomLeu3.chr9 C 0 C 0 s rheMac8.chr5 111604558 171 - 190429646 AATTGAAGCACCAAGCATGGA----ATTCACTGGTCATGTTATAGACAGACCAGTTTAATTATAACTAA-GACAATAGGCCCATCATAATCAATTGAGAGTTGTTTGC--ATAATGAAATGCTATTTTTTGAGTT-ATGATTATGATTTACCCCATGAATACAGCTTAATTTCAGATCA i rheMac8.chr5 C 0 C 0 s macFas5.chr5 110773767 171 - 189454096 AATTGAAGCACCAAGCATGGA----ATTCACTGGTCATGTTATAGACAGACCAGTTTAATTATAACTAA-GACAATAGGCCCATCATAATCAATTGAGAGTTGTTTGC--ATAATGAAATGCTATTTTTTGAGTT-ATGATTATGATTTACCCCATGAATACAGCTTAATCTCAGATCA i macFas5.chr5 C 0 C 0 s macNem1.NW_012012466v1 13340798 171 + 26754465 AATTGAAGCACCAAGCATGGA----ATTCACTGGTCATGTTATAGACAGACCAGTTTAATTATAACTAA-GACAATAGGCCCATCATAATCAATTGAGAGTTGTTTGC--ATAATGAAATGCTATTTTTTGAGTT-ATGATTATGATTTACCCCATGAATACAGCTTAATCTCAGATCA i macNem1.NW_012012466v1 C 0 C 0 s cerAty1.NW_012001307v1 4241639 171 - 5137665 AATTGAAGCACCAAGCATGGA----ATTCACTGGTCATGTTATAGACAGACAAGTTTAATTATAACTAA-GACAATAGGCCCATCATAATCAATTGAGAGTTGTTTGC--ATAATGAAATGCTATTTTTTGAGTT-ATGATTATGATTTACCCCATGAATACAGCTTAATCTCAGATCA i cerAty1.NW_012001307v1 C 0 C 0 s chlSab2.chr7 122948025 168 - 135778131 AATTGAAGCACCAAGCATGGA----ATTCACTGGTCATGTTATAGACAGACAAGTTTAATTATAACTAA-GACAATAGGCCCATCATAATCAATTGAGAGTTGTTTGC--ATAATGAAATGCTATTTTTTGAGTT-ATGATTATGATTTACCCCATGAATACAGCTTAATCTCAGA--- i chlSab2.chr7 C 0 C 0 s manLeu1.NW_012104388v1 2063605 171 + 2427316 AATTGAAGCACCAAGCATGGA----ATTCACTGGTCATGTTATAGACAGACAAGTTTAATTATAACTAA-GACAATAGGCCCATCATAATCAATTGAGAGTTGTTTGC--ATAATGAAATGCTATTTTTTGAGTT-ATGATTATGATTTACCCCATGAATACAGCTTAATCTCAGATCA i manLeu1.NW_012104388v1 C 0 C 0 s colAng1.NW_012119221v1 1358897 171 + 1448899 AATTGAAGCACCAAGCATGGA----ATTCACTGGTCATGTTATAGATAGACAAGTTTAATTATAACTAA-GACAATAGGCCCATTATAATCAATTGAGAGTTGTTTGC--ATAATGAAATGCTATTTCTTGAGTT-ATGATTATGATTTACCCCATGAATACAGCTTAATCTCAGATCA i colAng1.NW_012119221v1 C 0 C 0 s calJac3.chr3 53061518 168 - 190850796 AATTGAAGCACCAAGCATGGA----ATTCACTGGTCATGTTATAGATAGATAAGTTTAATTATAACTAA-GTCAATAGGACCACTGTAATAAATT--GAGTTGTTTGC--ATAATGAAATGCTATTTTTTGAGTT-ATGATTATGATTTACCCCATGAATATAGCTT-ACCTCAGACCA i calJac3.chr3 C 0 C 0 s saiBol1.JH378162 8231988 168 - 15139346 CATTGAAGCACCAAGCATGGA----ATTCACTGGTCCTGTTATAGATAGATAAGTTTAACTATAACTAA-GTCAATAGGGCCATTATAATAAATT--GAGTTGTTTGC--ATAATGAAATGCTATTTCTTGAGTT-ATGATTATGATTTACACCATGAATATAGCTC-ACCTCAGACCA i saiBol1.JH378162 C 0 C 0 s cebCap1.NW_016107439v1 7017383 168 - 7304997 AATTGAAGCACCAAGCACGGA----ATTCACTGGTTGTGTTATAGATAGATAAGTTTAATTATAACTAA-GTCAATAGGACCATTATAATAAATT--GAGTTGTTTGC--ATAATGAAATGCTATTTCTTGAGTT-ATGATTATGATTTACCCCATGAATATAGCTT-ACCTCAGGCCA i cebCap1.NW_016107439v1 C 0 C 0 s aotNan1.NW_018493494v1 9435843 168 - 11631747 AATTGAAGCACCAAGCATGGA----ATTCACTGGTCATGTTATAGATAGATAAGTTTAATTATAACTAA-GTCAATAGGACCATTATAATAAATT--GAGTTGTTTGC--ATAATGAAATGCTATTTCTTGAGTT-ATGATTATGATTTACCCCATGAATATAGCTT-ACCTCAGACCA i aotNan1.NW_018493494v1 C 0 C 0 s mm10.chr5 76458651 156 + 151834684 AGGTGAAGCACCCAGCGTGGAACTTATCCATCAGTCATG-TGCAGGTGGGTAAGTTTGGCTATCACCAAGGACAACCAAACTGTTCTAGTATGTTGAGAGCAGCT-------------------TTGCTGGAGTTAACGGCTGTGAGTCACCC---GGATCCAGGCTCACCTCAGCTCA i mm10.chr5 C 0 N 0 s canFam3.chr13 48040035 170 + 63241923 AATTGAAGTGCCAAGTATGGA----ATTCACTGGTGATGTTACAGATAGACAAGTTCACTTATAAGTAA-GATAATAAAATCATTATA-CAAGTTGAGAATTGTTTAC--ATGATGAAAAGCTATTTATTGAGTT-ATGAATATGAGTCACCCCATAAATCTAGTTCAATCTCATGTCA i canFam3.chr13 C 0 C 0 s dasNov3.JH568349 4137084 167 - 5279953 AATTGAAGCATCAAGTATAGA----ATTCACTGATTATGTTATACATAAACAAATTTGACTATAACTAA-GACAATAGGGCAATTACAATAAATTGAGAATTGTTTGCAAATCTCAAGATACTATTTCTTGAGTT-------ATAAGTCACATGATGAATGTAGCTTAATCTCAGGTCA i dasNov3.JH568349 I 225 C 0 a score=1001894.000000 s hg38.chr4_KI270787v1_alt 111855 88 + 111943 ACTAAGTCAAATAGGGTTCACATTCACCAAACAGATTTCATGTACCTAT-AAAAAAGGGTCAATAGTAGTCATTTTCTTTTTATCTAGG s panTro5.chr4 119679062 88 - 194502333 ACTAAGTCAAATAGGGTTCACATTCACCAAACAGATTTCATGTACCTAT-AAAAAAGGGTCAATAGTAGTCATTTTCTTTTTATCTAGG i panTro5.chr4 C 0 N 0 s panPan2.chr4 121092893 88 - 195804263 ACTAAGTCAAATAGGGTTCACATTCACCAAACAGATTTCATGTACCTAT-AAAAAAGGGTCAATAGTAGTCATTTTCTTTTTATCTAGG i panPan2.chr4 C 0 N 0 s gorGor5.CYUI01014963v1 4521879 88 - 17550833 ACTAAGTCAAATAGGGTTCACATTCACCAAACAGATTTCATGTACCTAT-AAAAAAGGGTCAATAGTAGTCATTTTCTTTTTATCTAGG i gorGor5.CYUI01014963v1 C 0 N 0 s nomLeu3.chr9 69396822 88 - 118206036 GCTAAGTCAAATAGGGTTCACATTCACCAAACAGATTTCATGTACCTAT-AAAAAAGGGTCAATAGTAGTCATTTTCTTCTTATCTAGG i nomLeu3.chr9 C 0 N 0 s rheMac8.chr5 111604729 88 - 190429646 ACTAAGTCAAACAGGGTTCACATTCACCAAACAGATTTCATGTACCTAT-AAAAAAGGGTCAATAGTAGTCATTTTCTTTTTATCTAGG i rheMac8.chr5 C 0 N 0 s macFas5.chr5 110773938 88 - 189454096 ACTAAGTCAAACAGGGTTCACATTCACCAAACAGATTTCATGTACCTAT-AAAAAAGGGTCAATAGTAGTCATTTTCTTTTTATCTAGG i macFas5.chr5 C 0 N 0 s macNem1.NW_012012466v1 13340969 88 + 26754465 ACTAAGTCAAACAGGGTTCACATTCACCAAACAGATTTCATGTACCTAT-AAAAAAGGGTCAATAGTAGTCATTTTCTTTTTATCTAGG i macNem1.NW_012012466v1 C 0 N 0 s cerAty1.NW_012001307v1 4241810 89 - 5137665 ACTAAGTCAAACAGGGTTCACATTCACCAAACAGATTTCATGTACCTATAAAAAAAGGGTCAATAGTAGTCATTTTCTTTTTATCTAGG i cerAty1.NW_012001307v1 C 0 N 0 s chlSab2.chr7 122948193 82 - 135778131 ------ACAAACAGGGTTCATATTCACCAAACAGATTTCATGTACCTAT-AAAAAAGGGTCAATAGTAGTCATTTTCTTTTTATCTAGG i chlSab2.chr7 C 0 N 0 s manLeu1.NW_012104388v1 2063776 89 + 2427316 ACTAAGTCAAACAGAGTTCACATTCACCAAACAGATTTCATGTACCTATAAAAAAAGGGTCAATAGTAGTCATTTTCTTTTTATCTAGG i manLeu1.NW_012104388v1 C 0 N 0 s colAng1.NW_012119221v1 1359068 88 + 1448899 ACTAAGTCAAACAGGGTTCACATTCACCAAACAGATTTCATGTACTTAT-AAAAAAGGATCAATAGTAGTCATTTTCTTTTTATCTAGG i colAng1.NW_012119221v1 C 0 N 0 s calJac3.chr3 53061686 88 - 190850796 ACTAAGTTGAATAGGGTTCACATTTACCAAATAGATTCCATGTACCTAT-AAAAAAGGGTTAATAGTAATTATTTTCTTTTTATATAGG i calJac3.chr3 C 0 N 0 s saiBol1.JH378162 8232156 88 - 15139346 ACTAAGTCGAATAGGGTTCACATTTACCAAATAAATTCCATGTACCTAT-AAAAAAGGGTTAATAGTAGTTATTTTCTTTTTATATAGG i saiBol1.JH378162 C 0 N 0 s cebCap1.NW_016107439v1 7017551 88 - 7304997 ACTAAGTCGAATAGGGTTCACATTTACCAAATAGATTCCATGTACCTAT-AAAAAAGTGTTAATAGTAGTTATTTTCTTTTTATATAGG i cebCap1.NW_016107439v1 C 0 N 0 s aotNan1.NW_018493494v1 9436011 88 - 11631747 ACTAAGTCGAATAGGGTTCACATTTACAGAATAGATTCCATGTACCTAT-AAAAAAGGGTTAATAGTAGTTATTTTCTTTTTATATAGG i aotNan1.NW_018493494v1 C 0 N 0 s canFam3.chr13 48040205 76 + 63241923 ----ACTCAGTTAGAGATCACAATCATCAAAAAGACTTCATAAACCTAT-TCAAGAGCTTCAGTAA--------TCCTTTTCATCTAGG i canFam3.chr13 C 0 N 0 s dasNov3.JH568349 4137251 88 - 5279953 ACTCAGTTGAATAGAGGTCATGTTCACCAAACAGATTCCATGCACCCAT-ACAAGCATGTCAACAGTACTTTTCTTCTTGCTATCTAGG i dasNov3.JH568349 C 0 N 0