##maf version=1 scoring=roast.v3.3 a score=185060.000000 s hg38.chr5_GL383530v1_alt 0 13 + 101241 AAGCTTgtgggta s panTro5.chr5 20228580 13 + 181907262 AAGCTTgtgggta i panTro5.chr5 N 0 C 0 s panPan2.chr5 20245891 13 + 183735486 AAGCTTgtgggta i panPan2.chr5 N 0 C 0 s gorGor5.CYUI01014999v1 4731911 13 - 13748885 AAGCTTgtgggta i gorGor5.CYUI01014999v1 N 0 C 0 s nomLeu3.chr2 53761082 13 - 163208435 AAGCTTgtgggta i nomLeu3.chr2 N 0 C 0 s rheMac8.chr6 87799177 13 - 180051392 AAGCTTgtgggta i rheMac8.chr6 N 0 C 0 s macFas5.chr6 87903590 13 - 181584905 AAGCTTgtgggta i macFas5.chr6 N 0 C 0 s macNem1.NW_012011400v1 1126548 13 - 8785636 AAGCTTgtgggta i macNem1.NW_012011400v1 N 0 C 0 s cerAty1.NW_012002401v1 1594717 13 + 27333823 AAGCTTgtgggta i cerAty1.NW_012002401v1 N 0 C 0 s chlSab2.chr4 1865133 13 - 91010382 AAGCTTgtgggta i chlSab2.chr4 N 0 C 0 s manLeu1.NW_012103732v1 1976216 13 + 5179401 AAGCTTgtgggta i manLeu1.NW_012103732v1 N 0 C 0 s colAng1.NW_012115488v1 7681953 13 - 21726897 AAGCTTgtgggta i colAng1.NW_012115488v1 N 0 C 0 s calJac3.chr2 112500643 13 + 204313951 AAGCTTgtgggta i calJac3.chr2 N 0 C 0 s saiBol1.JH378106 44946605 13 + 71252344 AAGCTTgtgggta i saiBol1.JH378106 N 0 C 0 s cebCap1.NW_016107830v1 311083 13 - 1393929 AAGCTTgtgggta i cebCap1.NW_016107830v1 N 0 C 0 s aotNan1.NW_018506370v1 1387186 13 - 15889662 AAGCTTgtgggta i aotNan1.NW_018506370v1 N 0 C 0 s otoGar3.GL873536 1263310 13 - 29863360 AAACTTgtgggta i otoGar3.GL873536 N 0 C 0 s mm10.chr13 76425405 13 + 120421639 AAACTTGTGGGTA i mm10.chr13 N 0 C 0 a score=2995075.000000 s hg38.chr5_GL383530v1_alt 13 267 + 101241 agatgtaggttctggagccaggctgcctggg-ctagaatttt-gcttcatcacattattgctgtgtgaccttagttagatagggtatttattcacggtgttcctgagttttctcatctggaaattgggataattacactaattgtctcataggggtactgtgaaaattaaatg--------catgtaaaacccttagaaccagtggttggtacgtagggagccctcaaatgttagCCGTAACAAATGTTAGCTGTTTTAATTATCCCTATCAATATA s panTro5.chr5 20228593 267 + 181907262 agatgtaggttctggagccaggctgcctggg-ctagaatttt-gcttcatcacattattgctgtgtgaccttagttagatagggtatttattcacggtgttcctgagttttctcatctggaaattgggataattacactaattgtctcataggggtactgtgaaaattaaatg--------catgtaaaacccttagaaccagtggttggtacgtagggagccctcaaatgttagCCGTAACAAATGTTAGCTGTTTTAATTATCCCTATCAATATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20245904 267 + 183735486 agatgtaggttctggagccaggctgcctggg-ctagaatttt-gcttcatcacattattgctgtgtgaccttagttagatagggtatttattcacggtgttcctgagttttctcatctggaaattgggataattacactaattgtctcataggggtactgtgaaaattaaatg--------catgtaaaacccttagaaccagtggttggtacgtagggagccctcaaatgttagCCGTAACAAATGTTAGCTGTTTTAATTATCCCTATCAATATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4731924 267 - 13748885 agatgtaggttctggagccaggctgcctggg-ctagaatttt-ccttcatcacattattgctgtgtgaccttagttagatagggtatttattcacggagttcctgagttttctcatctggaaattgggataactatactaattgtctcataggggtactgtgaaaattaaatg--------catgtaaaacccttagaaccagtggttggtacatagggagccctcaaatgttagCCGTAACAAATGTTAGCTGTTTTAATTATCCCTATCAATATA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53761095 267 - 163208435 agatgtaggttctggagccaggctgcctggg-ctagaatttt-gcttcatcacattattgctgtgtgaccttagttagatagggtatttattcacggtgttcctgagttttctcatctggaaattgggataattatactaattatctcataggggtactgtgaaaattaaatg--------catgtaaaatccttagaaccagtggttggtacatagggagccctcaaatgttagctgtAACAAATGTTAGCTGTTTTAATTATCCCTACCAATATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87799190 266 - 180051392 agatgtaggttctggagccaggctgcctagt-ttagaatttt-gcttcatcacattcttgctgtgtgaccttagttagatagggtatttatccacagtgttcctgagttttctcatctggaaattggaataattatactaattatctcata-ggttactgtgagaattaaatg--------catgtaaagaccttagaaccagtggttggtacatagtgagccctcaaatgttggccatAACAAATGTTAGCTGTTTTAATTATCACTATCAATACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87903603 266 - 181584905 agatgtaggttctggagccaggctgcctagt-ttagaatttt-gcttcatcacattcttgctgtgtgaccttagttagatagggtatttatccacagtgttcctgagttttctcatctggaaattggaataattatactaattatctcata-ggttactgtgagaattaaatg--------catgtaaagaccttagaaccagtggttggtacatagtgagccctcaaatgttggccatAACAAATGTTAGCTGTTTTAATTATCACTATCAATACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1126561 266 - 8785636 agatgtaggttctggagccaggctgcctagt-ttagaatttt-gcttcatcacattcttgctgtgtgaccttagttagatagggtatttatccacagtgttcctgagttttctcatctggaaattggaataattatactaattatctcata-ggttactgtgagaattaaatg--------catgtaaagaccttagaaccagtggttggtacatagtgagccctcaaatgttggccatAACAAATGTTAGCTGTTTTAATTATCACTATCAATACA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1594730 267 + 27333823 agatgtaggttctagagccaggctgcctagt-ttagaatttt-gctgcatcacattcttgctgtgtgaccttagttagatagggtatttatccacagtgttcctgagttttctcatctggaaattggaataattatactaattatctcatagggttactgtgagaattaaatg--------catgtaaagaccttagaaccagtggttggtacatagtgagccctcaaatgttggccatAACAAATGTTAGCTGTTTTAATTATCACTATCAATACA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1865146 267 - 91010382 agatgtaggttctggagccaggctgcctagt-ctagaatatt-gcttcatcacattcttgctgtgtgaccttagttagatagggtatttatccacagtgttcctgagttttctcatctggaaattggaataattatactagttatctcatagggttactgtgagaattaaatg--------catgtaaagaccttagaaccagtggttggtacatagtgagccctcaaattttggccatAACAAATGTTAGCTGTTTTAATTATCACTATCAATACA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1976229 267 + 5179401 agatgtaggttctagagccaggctgcctagt-ttagaatttt-gcttcatcacattcttgctgtgtgaccttagttagatagggtatttatccacagtgttcctgagttttctcatctggaaattggaataattatactaattatctcatagggttactgtgagaattaaatg--------catgtaaagaccttagaaccagtggttggtacatagtgagccctcaaatgttggccatAACCAATGTTAGCTGTTTTGATTATCACTATCAATACA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7681966 267 - 21726897 agatgtaggttctggagccaggctgcctagt-ctagaatttt-gcttcatcacattcttgctgtgtgaccttagttagatagggtatttatccacagtgttcctgagttttctcatctggaaattggaataattatactaattatctcatagggttactgtgagaattaaatg--------catgtaaagaccttagaaccagtggttggtacatagtgaaccctcaaatgttggccatAACAAATGTTAGCTATTTTAATGATCACTATCAATATA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112500656 267 + 204313951 aaatgaaggttctggagccaggttgcctggg-ctaggatttt-gcttcatcacactcttgctgtgtgactttaattagataggatatttaaccacggtgttcctgagttttctcatctggaaattgggataattatactaattgtctcatagggttactgtgagaattaaatg--------catgtaaagttcttagaaccagtggttggtacatagtgagccctcagatgttagctgtAACAAATGTTAGCTGTTTTAATGATCACCATCAATATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44946618 267 + 71252344 aaatgaaagttctggagccaggttgcctggg-ctagaattct-gcttcatcacactcttgctgtgtgaccttagttagataggatatttaaccacagtgttcctgagttttctcatctggaaatagggataattatactaattgtctcatagggttactgtgagaattaaatg--------catgtaaagctcttagaaccagtggttggtacatagtgagccctcagatgttagctgtAACAAATGTTAGCTGTTTTAATGATCATTATCAATATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 311096 267 - 1393929 aaatgaaggttcgggagccaggttgcctggg-ctagaatttt-gcttcatcacactcttgctgtgtgaccttagttagataggatatttaaccatggtgttcctgagttttctcatctggaaattgggataattatactaattgtctcatagggttactgtgaaaattaaatg--------catgtaaagctcttagaaccagtggttggtacatagtgagccctcagatgttagctgtAACAAATGTTAGCTGTTTTAATTATCACCATCAATATA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1387199 267 - 15889662 aaatgaaggttctggagccaggttgcctggg-ctagaatttt-gctctatcacactcttgctgtgtgaccttagttagataggatatttaaccacggtgttcctgagttttctcatctggaaattaggataattatactaattgtctcatagggttactgtgagaattaaatg--------catgtaaagctcttagaaccagtggttggtacatagtgagccctcagatgttagctgtAACAAATGTTAGCTGTTTTAATTATCACCGTCAATATA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1263323 235 - 29863360 gagtataggttctggagccagactgcctgggactagaattgtggcactgctatgtactttctttgtggctttac----atatggtacctaaccaccctgttcccaaatagtctgatcta-----ttggataattatactaacaatctcagagggctgctttgtgaactaaata--------cgtgtaaagc-----------atggttggtacattgtaagcctcc-------------aacgagtactgcctgctatAATCATCACCATGAATAT- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76425418 240 + 120421639 -GGTATA-GTTCGTgagtcagttggtatgga-gtggagttct-gatttgctacttatttggtgtgtgatcttaggtaga-----tacttaatctctccatttctgtat-ttcttgtttggaaaatgagataattatagtaattatctca---agttactttgaggattaaatg--------catgt-aagctcgtagaa-cagtgggtcacgtgtagtaaatcctc-------------agtaaata-tATATGCTGTGCTTACTGCTGTCAGCATC i mm10.chr13 C 0 I 3 s dasNov3.JH570378 1198062 237 - 11655695 AGATGTgagctctggaaaccgtctgcctggg-ctc-agttct-gacttgtcga------gtggtgtgaactctg----gtaagttacttaactactctgtgccttcatgtccttgtctgg-aattaagat-----------ttatctaaaagggtcattgtagggaccaagtgagttaatctatgtaaagcactatga--cagtgcgtgacacatggtgagctctc-------------aataaatgttagctgatattATAGTCATTATCAACATC i dasNov3.JH570378 N 0 C 0 a score=242355.000000 s hg38.chr5_GL383530v1_alt 280 20 + 101241 ATCATTGTTTCTGGCTGACT s panTro5.chr5 20228860 20 + 181907262 ATCATTGTTTTTGGCTGACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20246171 20 + 183735486 ATCATTGTTTTTGGCTGACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4732191 20 - 13748885 ATCATTGTTTCTGGCTGACT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53761362 20 - 163208435 ATCATTGTTTCTGGCTGACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87799456 20 - 180051392 ACCATTGTTTCTGGCTGACT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87903869 20 - 181584905 ACCATTGTTTCTGGCTGACT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1126827 20 - 8785636 ACCATTGTTTCTGGCTGACT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1594997 20 + 27333823 ACCATTGTTTCTGGCTGACT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1865413 20 - 91010382 ACCATTGTTTCTGGCTGACT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1976496 20 + 5179401 ACCATTGTTTCTGGCTGACT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7682233 20 - 21726897 ATCATTGTTTCTGGCTGACT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112500923 20 + 204313951 ATCATTGTTTCTGGATGATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44946885 20 + 71252344 ATCATTGTTTCTGGATGACT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 311363 20 - 1393929 ATCATTGTTTCTGGATGACT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1387466 20 - 15889662 ATCATTGTTTCTGGATGACT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 546669 19 - 10520994 ATCATTGTTTCTGGTTACA- i proCoq1.NW_012147189v1 N 0 C 0 s otoGar3.GL873536 1263558 18 - 29863360 --CTTCCATTCTGGTTGACT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76425661 20 + 120421639 CTCATCATTTCTGGTTAATT i mm10.chr13 I 3 C 0 s dasNov3.JH570378 1198299 20 - 11655695 CTTACCATGTCCTGTTTGCT i dasNov3.JH570378 C 0 C 0 a score=190993.000000 s hg38.chr5_GL383530v1_alt 300 15 + 101241 TTATAGATAGCTTAT s panTro5.chr5 20228880 15 + 181907262 TTATAGATAGCTTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20246191 15 + 183735486 TTATAGATAGCTTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4732211 15 - 13748885 TTATAGATAGCTTAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53761382 15 - 163208435 TTATAGGTAGCTTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87799476 15 - 180051392 TTATAGGTAGCTTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87903889 15 - 181584905 TTATAGGTAGCTTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1126847 15 - 8785636 TTATAGGTAGCTTAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595017 15 + 27333823 TTATAGGTAGCTTAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1865433 14 - 91010382 TTATA-GTAGCTTAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1976516 15 + 5179401 TTATAGGTAGCTTAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7682253 15 - 21726897 TTTTAGGCAACTTAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112500943 14 + 204313951 TTAT-GGTAGCTTAT i calJac3.chr2 C 0 I 321 s saiBol1.JH378106 44946905 14 + 71252344 TTAT-GGTAGCTTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 311383 14 - 1393929 TTAT-GATAGCTTAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1387486 14 - 15889662 TTAT-GGTAGCTTAT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84804056 15 + 108143057 TTATAGGTAGCTTAT i micMur3.chr12 N 0 C 0 s proCoq1.NW_012147189v1 546688 15 - 10520994 TTATAGATAGGTTAT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1263576 15 - 29863360 TTATAGGTAGCTCTT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76425681 15 + 120421639 CTGTACTTAGTTGAT i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1198319 15 - 11655695 CTATGGATAGCTTAT i dasNov3.JH570378 C 0 C 0 a score=56780.000000 s hg38.chr5_GL383530v1_alt 315 3 + 101241 AGA s panTro5.chr5 20228895 3 + 181907262 AGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20246206 3 + 183735486 AGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4732226 3 - 13748885 AGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53761397 3 - 163208435 AGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87799491 3 - 180051392 AGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87903904 3 - 181584905 AGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1126862 3 - 8785636 AGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595032 3 + 27333823 AGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1865447 3 - 91010382 AGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1976531 3 + 5179401 AGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7682268 3 - 21726897 AGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112501278 3 + 204313951 aga i calJac3.chr2 I 321 C 0 s saiBol1.JH378106 44946919 3 + 71252344 AGA i saiBol1.JH378106 C 0 I 325 s cebCap1.NW_016107830v1 311397 3 - 1393929 AGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1387500 3 - 15889662 AGA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84804071 3 + 108143057 AGA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 546703 3 - 10520994 AGA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1263591 3 - 29863360 AGA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76425696 3 + 120421639 GGA i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1198334 3 - 11655695 AGA i dasNov3.JH570378 C 0 C 0 a score=8230.000000 s hg38.chr5_GL383530v1_alt 318 1 + 101241 A s panTro5.chr5 20228898 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 20246209 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4732229 1 - 13748885 A i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53761400 1 - 163208435 A i nomLeu3.chr2 C 0 I 239 s rheMac8.chr6 87799494 1 - 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87903907 1 - 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1126865 1 - 8785636 A i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595035 1 + 27333823 A i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1865450 1 - 91010382 A i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1976534 1 + 5179401 A i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7682271 1 - 21726897 A i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112501281 1 + 204313951 a i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44947247 1 + 71252344 A i saiBol1.JH378106 I 325 C 0 s aotNan1.NW_018506370v1 1387503 1 - 15889662 A i aotNan1.NW_018506370v1 C 0 I 310 s micMur3.chr12 84804074 1 + 108143057 G i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 546706 1 - 10520994 G i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1263594 1 - 29863360 G i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76425699 1 + 120421639 G i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1198337 1 - 11655695 G i dasNov3.JH570378 C 0 C 0 e cebCap1.NW_016107830v1 311400 0 - 1393929 C a score=13365.000000 s hg38.chr5_GL383530v1_alt 319 1 + 101241 G s panTro5.chr5 20228899 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 20246210 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4732230 1 - 13748885 A i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87799495 1 - 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87903908 1 - 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1126866 1 - 8785636 A i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595036 1 + 27333823 A i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1865451 1 - 91010382 A i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1976535 1 + 5179401 A i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7682272 1 - 21726897 A i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112501282 1 + 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44947248 1 + 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 311400 1 - 1393929 A i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84804075 1 + 108143057 A i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 546707 1 - 10520994 A i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1263595 1 - 29863360 A i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76425700 1 + 120421639 A i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1198338 1 - 11655695 A i dasNov3.JH570378 C 0 C 0 e aotNan1.NW_018506370v1 1387504 310 - 15889662 I e nomLeu3.chr2 53761401 239 - 163208435 I a score=71270.000000 s hg38.chr5_GL383530v1_alt 320 9 + 101241 AAAACATTG-- s panTro5.chr5 20228900 9 + 181907262 AAAACATTG-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20246211 9 + 183735486 AAAACATTG-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4732231 9 - 13748885 AAAACATTG-- i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87799496 9 - 180051392 AAAACATTG-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87903909 9 - 181584905 AAAACATTG-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1126867 9 - 8785636 AAAACATTG-- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595037 9 + 27333823 AAAACATTG-- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1865452 9 - 91010382 AAAACATTG-- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1976536 9 + 5179401 AAAACATTG-- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7682273 9 - 21726897 CAAACATTG-- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112501283 9 + 204313951 AAAACATTG-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44947249 9 + 71252344 AAAACATTA-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 311401 9 - 1393929 AAAACATTG-- i cebCap1.NW_016107830v1 C 0 I 339 s aotNan1.NW_018506370v1 1387814 9 - 15889662 aaaaCATTG-- i aotNan1.NW_018506370v1 I 310 C 0 s micMur3.chr12 84804076 7 + 108143057 --AATATTA-- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 546708 7 - 10520994 --AATATTA-- i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1263596 4 - 29863360 --AA---TA-- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76425701 4 + 120421639 --AATA----- i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1198339 7 - 11655695 ----AATTCAA i dasNov3.JH570378 C 0 C 0 e nomLeu3.chr2 53761401 239 - 163208435 I a score=162307.000000 s hg38.chr5_GL383530v1_alt 329 16 + 101241 TCAGTGAAAAATTCCA s panTro5.chr5 20228909 16 + 181907262 TCAGTGAAAAATTCCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20246220 16 + 183735486 TCAGTGAAAAATTCCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4732240 16 - 13748885 TCAGTGAAAAATTCCA i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87799505 16 - 180051392 TCAGTGAAAAATTTCG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87903918 16 - 181584905 TCAGTGAAAAATTTCG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1126876 16 - 8785636 TCAGTGAAAAATTTCG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595046 16 + 27333823 TCAGTGAAAAATTTCG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1865461 16 - 91010382 TCAGTGAAAAATGTCG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1976545 16 + 5179401 TCAGTGAAAAATTTCG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7682282 16 - 21726897 TCAGTGAAAAATTTCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112501292 16 + 204313951 CATGTGAAAAATTTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44947258 16 + 71252344 CAAGTGAAAAATTTTG i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1387823 16 - 15889662 CAAGTGAAAAATTTTG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84804083 16 + 108143057 TCAGTGGAAAATTTAG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 546715 16 - 10520994 TCAGTGGAAAATTTAG i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1263600 16 - 29863360 CCAGTGAAAATTTTAA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76425705 14 + 120421639 TCAGTCGAAACTGT-- i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1198346 16 - 11655695 TCAGTAGAAAATTTAG i dasNov3.JH570378 C 0 C 0 e cebCap1.NW_016107830v1 311410 339 - 1393929 I e nomLeu3.chr2 53761401 239 - 163208435 I a score=825347.000000 s hg38.chr5_GL383530v1_alt 345 66 + 101241 GATCTTAAGTATAAGTTTGA----GAGAAAT---ACAAGAGGGAAGGGAAGTATTTGAAGCTCTGTTAGTTCA s panTro5.chr5 20228925 66 + 181907262 GATCTTAAGTATAAGTTTGA----GAGAAAT---ACAAGAGGGAAGGGAAATATTTGAAGCTCTGTTAGTTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20246236 66 + 183735486 GATCTTAAGTATAAGTTTGA----GAGAAAT---ACAAGAGGGAAGGGAAATATTTGAAGCTCTGTTAGTTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4732256 66 - 13748885 GATCTTAAGTATAAGTTTGA----GAGAAAT---ACAAGAGGGAAGGGAAATATTTGAAGCTCTGTTAGTTCA i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87799521 66 - 180051392 GATCTTAAGTATAAGTTTGA----AAGAAAT---ACAAGAGGAAAGGGAAATATTTGAAGCTCTGTTAGTTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87903934 66 - 181584905 GATCTTAAGTATAAGTTTGA----AAGAAAT---ACAAGAGGGAAGGGAAATATTTGAAGCTCTGTTAGTTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1126892 66 - 8785636 GATCTTAAGTATAAGTTTGA----AAGAAAT---ACAAGAGGGAAGGGAAATATTTGAAGCTCTGTTAGTTCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595062 66 + 27333823 GATCTTAAGTATAAGTTTGA----AAGAAAT---ACAAGAGGGAAGGGAAATATTTGAAGCTCTGTTAGTTCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1865477 66 - 91010382 GATCTTAAGTGTAAGTTTGA----AAGAAAT---ACAAGAGGGAAGGGAAATATTTGAAGCTCTGTTAGTTCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1976561 66 + 5179401 GATCTTAAGTATAAGTTTGA----AAGAAAT---ACAAGAGGGAAGGGAAATATTTGAAGCTCTGTTAGTTCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7682298 66 - 21726897 GATCTTAAGTATAAGTTTGA----AAGAAAT---ACAAGAGGGAAGGGAAATATTTGAAGCTCTGTTAGTTCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112501308 69 + 204313951 GATCGTAAGTGTAAGTTTGA----TAGAAATACAACAACAGGGAAGGAAAATATCTGAAGCTCTGTTAGTTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44947274 69 + 71252344 GATCTTAAGTATAAGTTTAA----TAGAAATACAACAACAGGGAAGGAAAATATCTGAAGCTCTGTTAGTTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 311749 66 - 1393929 GATCTTAAGTATAAATTTGA----TAGAAAT---ACGCCAGGGAAGGAAAATATCTGAAGCTGTGTTAGTTCA i cebCap1.NW_016107830v1 I 339 C 0 s aotNan1.NW_018506370v1 1387839 69 - 15889662 GATATTAAGTATAAGTTTGA----TAGAAATACAACAACAGGGAAGGAAAATATCTGAAGCTCTGTTAGTTCA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84804099 66 + 108143057 GATCTTGAATATAAGACTGA----TAGGAAT---ACAACAGGGAAGGGAATTATTTGAAGCTCTATTAGTCTA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 546731 58 - 10520994 GATCTTGAATATAAGACTGA----TAGGAAT---ACATCAGGGAAGGGAATTATTTGAAGC--------TCTA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1263616 66 - 29863360 GATCTTGAATATAAGACTGA----TAGAAAT---ATAACAGGGAAGGGAATTATTTGAAGCTTTGTTAGTTTA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76425719 66 + 120421639 AGCCATGGATGTAGTGTTGA----GAAAAAC---CCAGTAAAGAAGGGCGATATTTGGAGCCTTGTTAGTTTT i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1198362 55 - 11655695 GATCTGGAATATAAGGTTGATTGTGAAGAAT---TCATCAG---------------GAAGTTCTGTTAGTCTA i dasNov3.JH570378 C 0 C 0 e nomLeu3.chr2 53761401 239 - 163208435 I a score=2838026.000000 s hg38.chr5_GL383530v1_alt 411 194 + 101241 TTATGAATGAA-TGCTTCTGTAGTTTGTGGTTTGGAAGAC-TAAGATATTGACATTTTTATTGACTAAA------TTTTTAGC---AGT-GATAAAAGTTGCTTGACTTGAGTTTTTAAAAT--CTAGGAATTTATTGCTGGCTGAAT--AAAAAGTTAATATGATAATAGGTATTTTGTGACCCAGGCTAC-AGTATATTTACCAATCCT s panTro5.chr5 20228991 195 + 181907262 TTATGAATGAAATGCTTCTGTAGTTTGTGGTTTGGAAGAC-TAAGATATTGACATTTTTATTGACTAAA------TTTTTAGC---AGT-GGTAAAAGTTGCTTGACTTGAGTTTTTAAAAT--CTAGGAATTTATTGCTGGCTTAAT--AAAAAGTTAATATGATAATAGGTATTTTGTGACCCAGGCTAC-AGTATATTTACCAATCCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20246302 195 + 183735486 TTATGAATGAAATGCTTCTGTAGTTTGTGGTTTGGAAGAC-TAAGATATTGACATTTTTATTGACTAAA------TTTTTAGC---AGT-GGTAAAAGTTGCTTGACTTGAGTTTTTAAAAT--CTAGGAATTTATTGCTGGCTTAAT--AAAAAGTTAATATGATAATAGGTATTTTGTGACCCAGGCTAC-AGTATATTTACCAATCCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4732322 195 - 13748885 TTATGAATGAAATGCTTCTGTAGTTTGTGGTTTGGAAGAC-TAAGATATTGACATTTTTATTGACTAAA------TTTTTAGC---AGT-GGTAAAAGTTGCTTGACTTGAGTTTTTAAAAT--CTAGGAATTTATTGCTGGCTTAAT--AAAAAGTTAATATGATAATAGGTATTTTGTGACCCAGGCTAC-AGTATATTTACCAATCCT i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87799587 194 - 180051392 TTATGAATGAAATGCTTCTGTAGTTTGTGGTTTGGAAGAC-TAAGATATTGACATTTTTATTGACTAGA------TTTTTAGC---AGT-GGTAAAA-TTGCTTGATTTGAGTTTTAAAAAT--CTAGGAATTTATTGCTGGCTTAAC--AAAAAGTTAATATGATAATAGGTATTTTGTGACCCAGGCTAC-AGTATATTCAGCAATCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87904000 194 - 181584905 TTATGAATGAAATGCTTCTGTAGTTTGTGGTTTGGAAGAC-TAAGATATTGACATTTTTATTGACTAGA------TTTTTAGC---AGT-GGTAAAA-TTGCTTGATTTGAGTTTTAAAAAT--CTAGGAATTTATTGCTGGCTTAAC--AAAAAGTTAATATGATAATAGGTATTTTGTGACCCAGGCTAC-AGTATATTCAGCAATCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1126958 194 - 8785636 TTATGAATGAAATGCTTCTGTAGTTTGTGGTTTAGAAGAC-TAAGATATTGACATTTTTATTGACTAGA------TTTTTATC---AGT-GGTAAAA-TTGCTTGATTTGAGTTTTAAAAAT--CTAGGAATTTATTGCTGGCTTAAC--AAAAAGTTAATATGATAATAGGTATTTTGTGACCCAGGCTAC-AGTATATTCAGCAATCCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595128 194 + 27333823 TTATGAATGAAATGCTTCTGTAGTTTGTGGTTTGGAAGAC-TGAGATATTGACATTTTTATTGACTAGA------TTTTTAGC---AGT-AGTAAAA-TTGCTTGATTTGAGTTTTAAAAAT--CTAGGAATTTATTGCTGGCTTAAC--AAAAAGTTAGTATGATAATAGGTATTTTGTGACCCAGGCTAC-AGTATATTCAGCCATCCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1865543 194 - 91010382 TTATGAATGAAATGCTTCTGTAGTTTGTGGTTTGGAAGAT-GAAGATATTGACATTTTTATTGACTAGA------TTTTTAGC---AGT-GGTAAAA-TTGCTTGACTTGAGTTTTAAAAAT--CTAGGAATTTATTGCTGGCTTAAT--AAAAAGTTAATGTGATAATAGGTATTTTGTGACCGAGGCTAC-AGTATATTCAGCAATCCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1976627 194 + 5179401 TTATGAATGAAATGCTTCTGTAGTTTGTGGTTTGGAAGAC-TAAGATATTGACATTTTTATTGACTAGA------TTTTTAGC---AGT-AGTAAAA-TTGCTTGATTTGAGTTTTAAAAAT--CTAGGAATTTATTGCTGGCTTAAC--AAAAAGTTAATATGATAATAGGTATTTTGTGACCCAGGCTAC-AGGATATTCAGCAATCCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7682364 194 - 21726897 TTATGAATGAAATGCTTCTGTAGTTTGTGGTTTGGAAGAC-TAAGATATTGACATTTTTATTGACTAGA------TTTTTAGC---AGT-GGTAAAA-TTGCTTGACTTGAGTTTAAGAAAT--CTAGGAATTTATTGCTGGCTTACT--AAAAAGTTAATATGATAATAGGTATTTTGTGACCCACGCTAC-AGTATATTCAGCAATCCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112501377 194 + 204313951 TTATGAATAAAATGCTTCTGTAGTTTGTGATTTGGAAAAT-TAGGATATTGATAATTTTATTGACTAAA------TTTTTAGTAGAAGT-AGTAAAA-TTGCTTGACCCGAGTTTTAAAAAT--CTAGGAATTTAGTGCTGACTCAAT--AAAAAGTTAAT---ATAATAGGTATTTTGTGGCCCAGACTAC-AGTATATTTAGCAATCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44947343 198 + 71252344 TTATGAATAAAATGCTTCTGTAGTTTGTGGTTTGGAAAAC-TAAGATATTGACAATTTTATTGACTAAA------TTTTTAGTAGGAGTAAGTAAAA-TTGCTTGACCTGAGTTTTAAAAAT--CCAGGGATTTAGTGCTAACTCAAT--AAAAAGTTAATATGATAATAGGTATTTTGTGACCCAGACTAC-AATATATTTAGCAATCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 311815 197 - 1393929 TTATGAATAAAATGCTTCTGTAGCTTCTGGTTTGGAAAAA-TAAGATATTGACAATTTTATTGACTAAA------TTTTTAGTAGGAGT-AGTAAAA-TTGCTTGACCTGAGTTTTAAAAAT--CTAGGGATTTAGTGCTGACTCAAT--GAAAAGTTAATATGATAATAGGTATTTTGTGGCCCAGACTAC-AGTATATTTAGCAATCCT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1387908 197 - 15889662 TTATGAATAAAATGCTTCTGTAGTTTGTGGTTTGGAAAAC-TAAGATATTGACAATTTTATTGACTACA------TTTTTTGTAGGAGT-AGTAAAA-TTGCTTGACCTGAGTTTTAAAAAT--CTAGGGATTTAGTGCTGACTCAAT--AAAAAGTTAATATGATAATAGGTATTTTGTGGCCCAGACTAC-AGTATATTTAGCAATCCT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84804165 198 + 108143057 TTATGAATGAAATGCTTCAGTAGTTTGCGGTTTAGAAGAC-TAAGTTATTGACATTTTTATTGACTGAA------TTTTTAGCAGGCGT-AGTAAAA-TTGCTTGACTTGAGTTTTAAAAAT--CTAGGCATTTATTGCTGGTTCAAT--AAAAAGTTAATACAATAATAGCTATTTTGTGGCCCAGACTACAAGTATATTTAGCAATCAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 546789 197 - 10520994 TTATGAATGAAATGCTTCAGTAGTTTGCGGTTTAGAAGAC-TAAGTTATTGACATTTTTATTGACTGAA------TTTTTAACAGGTGT-AGTAAAA-TTGCTTGACTTGAGTTTAAAAAAT--CTAGGAATTTATTGCTGGTTCAAT--AAAAAGTTAATATTATAATAGCT-TTTTGTGGCCCAGACTACAAGTATATTTAGCAATCAT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1263682 198 - 29863360 TTATGAATGAAATGCTTTGGTAGTTTGTGGTTTCAAAGACAAAAGTTATTGAT-TTTTTATTGACTGAA------TTTTTAGCAGGAGT-AGTAAAA-TTGCTTTACTTGAGCTTTAAAAAT--CTAGGCATTTACTGCTGGTTCAAT--AAAAAGTTAATGTGATAATAACTGTTTTGTGGTCCAGACTACGGGAATATTTAGCAATCAT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76425785 192 + 120421639 TATTGAATGAAACGCTGTGGTG--TTATGGTTTGGAATAC-TAAATTATTGATATTTTTATTGACTAGA------TTTTTTTCAGCAGT-AGTAAAC-TTACCTGAATTGCATTTTTAAAAT--TCAGGAATTCATTGCCGATTCAAT--AAAAAATTAATATG---ATAGGTATTTTGTGACC-AGACAACAAGTATATTTAGCTGTCAC i mm10.chr13 C 0 C 0 s canFam3.chr3 14284995 194 + 91889043 TTATGAATGAAATGCTTCAATAGTTTATGGTTTGGGAGAC--AAGTTATTCACATTTTTATTGACTGAA------TTTTTAGCAGGTGT-AATAAAC-TTGTCTAGC--GAG-TTAAAAAAT--CTAGGAATTTATTGCTGATGCAAT--AAAAAGTTAATATAATAATAGATATTTTATGGCCCAGACTACAAGTATGTTTAGCAATTAT i canFam3.chr3 N 0 C 0 s dasNov3.JH570378 1198417 208 - 11655695 TTATGAAAGAAATGCTTCAGTAATTTGTGGTTTGGGAGAC-TAAGTTACTGAAATTATTGTCTAATGAATTTTTTTTTTTTGCAGGAGT-ATTAAAA-TATTCTGACATGAGTTTTAAAACTTCTTAGGAATTTATTGTTGATTCAATAAAAAAAGTTAACAGGATAATAGGTGTTTTGTGGCCCAGACTACAAGTATATTTAGTAATTAT i dasNov3.JH570378 C 0 C 0 e nomLeu3.chr2 53761401 239 - 163208435 I a score=286835.000000 s hg38.chr5_GL383530v1_alt 605 22 + 101241 GAAAATTGCAAA-TATA------------------------------------------CAAGAG s panTro5.chr5 20229186 22 + 181907262 GAAAATTGCAAA-TATA------------------------------------------CAAGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20246497 22 + 183735486 GAAAATTGCAAA-TATA------------------------------------------CAAGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4732517 22 - 13748885 GAAAATTGCAAA-TATA------------------------------------------CAAGAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53761640 22 - 163208435 GAAAATTGCAAA-TATA------------------------------------------CAAGAG i nomLeu3.chr2 I 239 C 0 s rheMac8.chr6 87799781 22 - 180051392 GAAAACTGCAAA-TATA------------------------------------------CAAGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87904194 22 - 181584905 GAAAACTGCAAA-TATA------------------------------------------CAAGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1127152 22 - 8785636 GAAAACTGCAAA-TATA------------------------------------------CAAGAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595322 22 + 27333823 GAAAACTGCAAA-TATA------------------------------------------CAAGAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1865737 22 - 91010382 GAAAACTGCAAA-TATA------------------------------------------CAAGAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1976821 22 + 5179401 GAAAACTGCAAA-TATA------------------------------------------CAAGAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7682558 22 - 21726897 GAAAACTGCAAA-TATA------------------------------------------CAAGAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112501571 22 + 204313951 GAAAATTGCAAA-TATA------------------------------------------CAAGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44947541 22 + 71252344 GAAAATTGCAAA-TATA------------------------------------------CAAGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 312012 22 - 1393929 GAAAATTGCAAA-TATG------------------------------------------CAAGAG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1388105 22 - 15889662 GAAAATTGCAAC-TATA------------------------------------------CAAGAG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84804363 23 + 108143057 GAAAATTGCAAACTGCA------------------------------------------CAATAG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 546986 23 - 10520994 GAAAATTGCAAACTGCA------------------------------------------CAATAG i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1263880 23 - 29863360 GAAAATTGCAAACTAAA------------------------------------------CAATAG i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76425977 64 + 120421639 AAAAGCTGCAAA-CATggggctggagaaagggctcagcagggaacagctagatgctcttccagag i mm10.chr13 C 0 I 162 s canFam3.chr3 14285189 17 + 91889043 GAAAATTGCAAACTAAA------------------------------------------------ i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1198625 17 - 11655695 GAAAACTACAAACTGAA------------------------------------------------ i dasNov3.JH570378 C 0 C 0 a score=3608735.000000 s hg38.chr5_GL383530v1_alt 627 264 + 101241 CAGTATACTGTCTGCTACTAGAATACTGGATTATGCTTTCAAAAATAGCAAACTTGCAATCTCCTTTCCT--------CCCACACTCGTTCCCACCACTAGGATTCATATGTAATGAAAT-GAAACATC---TTATC---AGAAA--------------CTTTAATAATCTTGTCTTTTTATATTAGTTTGGATTTGC---ATATTTATTGT-TTTCTTACTTACATATGTACCTATACAT-TTATTTTATTCTAAAGATGTGTTCTTTAGTTATAAA-----------------------------------------TGGTTGTAAGTCAATTTGGG s panTro5.chr5 20229208 264 + 181907262 CAGTATACTGTCTGCTACTAGAATACTGGATTATGCTTTCAAAAATAGCAAACTTGCAATCTCCTTTCCT--------CCCACACTCGTTCCCACCACTAGGATTCATATGTAATGAAAT-GAAACATC---TTATC---AGAAA--------------CTTTAATAATCTTGTCTTTTTATATTAGTTTGGATTTGC---ATATTTATTGT-TTTCTTACTTACATATGTACCTATACAT-TTATTTTATTCTAAAGATGTGTTCTTTAGTTATAAA-----------------------------------------TGGTTGTAAGTCAATTTGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20246519 264 + 183735486 CAGTATACTGTCTGCTACTAGAATACTGGATTATGCTTTCAAAAATAGCAAACTTGCAATCTCCTTTCCT--------CCCACACTCGTTCCCACCACTAGGATTCATATGTAATGAAAT-GAAACATC---TTATC---AGAAA--------------CTTTAATAATCTTGTCTTTTTATATTAGTTTGGATTTGC---ATATTTATTGT-TTTCTTACTTACATATGTACCTATACAT-TTATTTTATTCTAAAGATGTGTTCTTTAGTTATAAA-----------------------------------------TGGTTGTAAGTCAATTTGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4732539 264 - 13748885 CAGTATACTGTCCGCTACTAGAATACTGGATTATGCTTTCAAAAATAGCAAACTTGCAATCTCCTTTCCT--------CCCACACTCGTTCCCACCACTAGGATTCATATGTAATGAAAT-GAAACGTC---TTTTC---AGAAA--------------CTTTAATAATCTTGTCTTTTTATATTAGTTTGGATTTGT---GTATTTATTGT-TTTCTTACTTACATATGTACCTATACAT-TTATTTTATTCTAAAGATGTGTTCTTTAGTTATAAA-----------------------------------------TGGTTATAAGTCAATTTGGG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53761662 264 - 163208435 CAGTATACTGTCTGCTACTAGAATACTGGATTATGCTTTCAAAAATAGCAAACTTGCAATCTCCTTTCCT--------CCCACACTTGTTCCCACCACTAGGATTCATATGTAATGAAAT-GAAATGTC---TTATC---AGAAA--------------CTTTAATAATCTTGTCTTTTTATATTAGTTTGGATTTGC---ATATTTATTGT-TTTCTTACTTACATATGTACCTACACAT-TTATTTTATTCTAAAGATGTGTTCTTTAGTTATAAA-----------------------------------------TGGTTATAAGTCAATTTGGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87799803 264 - 180051392 CAGTATACTGTCTGCTACTAGAATACTGGACTATGCTTTCAAAATTAGCAAACTCGCAGTCTCCTTTCAT--------CCCACACTCGTTCCCACCACTAGGATTCATATGTAATGAAAT-GAAATGTC---TTATC---AGAAA--------------CTTTAACAATCTTGTCTTTTTATATTAGTTTGGATTTGC---ATATTTATTGC-TTTCTTTCTTATATATGTACCTATACAT-TTATTTTATTCTAATGATGTGTTCTTTATTAATAAA-----------------------------------------TGGTTATAAGTCAATTTGGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87904216 264 - 181584905 CAGTATACTGTCTGCTACTAGAATACTGGACTATGCTTTCAAAATTAGCAAACTCGCAGTCTCCTTTCAT--------CCCACACTCGTTCCCACCACTAGGATTCATATGTAATGAAAT-GAAATGTC---TTATC---AGAAA--------------CTTTAACAATCTTGTCTTTTTATATTAGTTTGGATTTGC---ATATTTATTGC-TTTCTTACTTATATATGTACCTATACAT-TTATTTTATTCTAATGATGTGTTCTTTATTAATAAA-----------------------------------------TGGTTATAAGTCAATTTGGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1127174 264 - 8785636 CAGTATACTGTCTGCTACTAGAATACTGGACTATGCTTTCAAAATTAGCAAACTCGTAGTCTCCTTTCAT--------CCCACACTCGTTCCCACCACTAGGATTCATATGTAATGAAAT-GAAATGTC---TTATC---AGAAA--------------CTTTAACAATCTTGTCTTTTTATATTAGTTTGGATTTGC---ATATTTATTGC-TTTCTTACTTATATATGTACCTATACAT-TTATTTTATTCTAATGATGTGTTCTTTATTAATAAA-----------------------------------------TGGTTATAAGTCAATTTGGG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595344 264 + 27333823 CAGTATACTGTCTGCTACTAGAATACTGGACTATGCTTTCAAAATTAGCAAACTCGCAGTCTCCTTTCAT--------CCCACACTCGTTCCCACCACTAGGATTCATATGTAATGAAAT-GAAATGTC---TTATC---AGAAA--------------CTTTAACAATCTTGTCTTTTTATATTAGTTTGGATTTGC---ATATTTATTGC-TTTCTTACTTATATATGTACCTATACAT-TTATTTTATTCTAATGATGTGTTCTTTATTAATAAA-----------------------------------------TGGTTATAAGTCAATTTAGG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1865759 265 - 91010382 CAGTGTACTGTCTGCTACTAGAATACTGGATTATGCTTTCAAAATTAGCAAACTTGCAGTCTCCTTTCCT--------TCCACACTCGTTCCCACCACTAGGATTCATATATAATGAAAT-GAAATGTC---TTATT---GGAAA--------------CTTTAACAATCTTGTCTTtttatattagtttggatttgc---atatttattgctttttttacttatatatgtacctatacat-ttattttattcaaatgatgtgttctttatttatAAA-----------------------------------------TGGTTATAAGTCAATTTGGG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1976843 264 + 5179401 CAGTATACTGTCTGCTACTAGAATACTGGACTATGCTTTCAAAATTAGCAAACTCGCAGTCTCCTTTCAT--------CCCACACTCGTTCCCACCACTAGGATTCATATGTAATGAAAT-GAAATGTC---TTATC---AGAAA--------------CTTTAACAATCTTGTCTTTTTATATTAGTTTGGATTTGC---ATATTTATTGC-TTTCTTACTTATATATGTACCTATACAT-TTATTTTATTCTAATGATGTGTTCTTTATTAATAAA-----------------------------------------TGGTTATAAGTCAATTTGGG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7682580 264 - 21726897 CAGTGTACCGTCTGCTACTAGAATACTGGATTATGCTTTCAAACTTAGCAAACGCACAGTCTCCTTTCCT--------CCCACACTCATTCTCACCGCTAGGATTCATATGTAATGAAAT-GAAACGTC---TTATC---AGAAA--------------CTTCAACAATCTTGTCTTTTTATACTAGTTTGGATTTGC---GTATTTATTGC-TTTCTTACTTATATATGTACCTATACAT-TTATTTTATTCTAATGATGTGTTCTTTATTTTTAAA-----------------------------------------TGGTTATAAGTCAATTTGGG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112501593 260 + 204313951 CAGGATACTGTCTGCTGCTAGAATCCTGGATTAGGCTTTCAAACTTAGCAAACCTGCAATCTCCTCTCCT--------CCCATACTGAATCCCAGCACTAGGATTCATATGTAATGAAAT-GAAAGGTC---TTATC---AGAAA--------------CTTGAATCATCTTGTCTTTTTATATTAGTTTGAATTTGC---ATATTTATTGT-TTTTTT----ATATATGTACTTATACAT-TTATTTTATTCTAATTATGTGTTCTGTAGTTATAAA-----------------------------------------GGGTTATAAGTCAATTTGGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44947563 262 + 71252344 TGGGATACTGTCTGCTGCTAGAATACTGGATTAGGCTTTCAAAATTAGCAAACCTGCAATTTCCTCTTCT--------CCCATACTCATTCCCACCACTAGGATTCATATGTAATGAAAT-GAAAGGTC---TTATC---AGAAA--------------CTTTAATCATCTTGTCTTTTTTTATTAGTTTGGATTTGC---GTATTTATTGT-TTTTTT--TAATATATGTACTTATACAT-TTATTTTATTCTAATTATGTTTTCTGTAGTTATAAA-----------------------------------------GGGTTATAAGTCAATTTGGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 312034 260 - 1393929 CAGGATACTGTCTGCTACTAGAATACTGGATTAGGCTTTCAAAATCAGCAAACCTGCAATCTCCTCTCCT--------CCCATGCACATTCCCACCACTAGGATTCATATGTAATGAAAT-GAAAGGTC---TTATC---AGAAA--------------CTTTAATCATCTTGTCTTTTTATATTAGTTTGGATTTGC---ATATTTATTGG-TTTTTT----ATATATGTGCTTACACAT-TTATTTTATTCTAATTATGTGTTCTGTAGTTATAAA-----------------------------------------GGGTTGTAAGTCAATTTGGG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1388127 257 - 15889662 CAGGATACTGTCTGCTACTAGAATACTGGATTAGGCTTTCAAAATTAGCAAACCTGCAATCTCCTCTCCT--------CCCATACTCATTCCCACCAGTAGGATTCATATGTAATGAAAT-AAAAGGTC---TTATC---AGAAA--------------CTTTAATCATTTTGTCTTTTTATATTAGTTTGGATTTGC---ATATTTAT----TTTTTT----ATATATGTACTTATACAT-TTATTTAATTCTAATTGTGTGTTCTGTAGTTATAAA-----------------------------------------GGGTTATAAGTCAATTTGGG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84804386 278 + 108143057 ------ACTGTCTGATATTAGGATATTGGGTTATGCTTTCAAAATTAGC-AACTTGCAATTTCCTCTTCCCTCCTCAGCCTGCACCCATCCCCACCACAAGACTTCATATGTAGTGAAATGGGAATGTCTTTTTATC---AGAACtagtctttaatagtctttaatagtcttGTCTTTTTATGTTAGTTTGTATTTGC---ATATTTATTAT-TTTCTTA-----GTATTAACTTATACCT-TTATTTTATTCTAATGGTATATCCTGTAGTTATAAA-----------------------------------------GGTTTGTATGTCAATTTGGC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 547009 261 - 10520994 ------ACTGTCTCATATTAGGATATTGGGTTATGCTTTCAAAATTAGC-AACTTGCAATTTCCTCTTCCCTCCTCAGCCCACATCCATCCCTACCACAAGACTTCATATGTAGTGAAAT-GGAATGTCTTTTTATC---AGAA---------------CTTTAATAGTCTTGTCTTTTTATGTTAGTTTGGATTTGC---ATATTTATTAT-TTTCTTA-----GTATTTAC-TATACCT-TCATTTTATTCTAATGGTATGTCCTGTAGTTATAAA-----------------------------------------GGGTTGTATGTCACTTTGGC i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1263903 265 - 29863360 ------ACTGCCTGATAGTAGGATATTGGGCTATGCTTTTAGAATTAGC-AACTTGCAATTTCCTTTTCCCTCCTCAGCCCACGTCCATCCCCCCTACAAGACATCGTATGCAGTGAAAT-GAAATGTCATTTTACC---AGAA---------------CTTTAATAGTTTTGTCTTTTTATGTTAGTTTGGATTTGCTAACTATTTATTAC-TTTCTTA-----TTATTTACTTACCCCT-TTATTTTATTCTAATGGTATGCCCTGTAGTTTATAA-----------------------------------------AGTGTGTATGTCAATTTGGT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76426203 243 + 120421639 CAGTTAACTCTCTGTCACTCCAATGGTGACTTGTGGTTTTAAGACTAGCAAGTATGAAGTGTCCTCTGTG--------TTCAT--------CTATCAC-AATTTTCATATGTACTGAAAT-GAAAGTTCTTCTTCCC---AGACG--------------AGCTAATCATCCTTTCTTCTCCTGTTAAAATGGGCGTGC---ATATGT----T-TTTCTTA---------GCACCGATGCCT-TTATTGTATCCTAATGATATG--CCATAATGTGACA-----------------------------------------GGGATTACATTTACTTTTGT i mm10.chr13 I 162 C 0 s canFam3.chr3 14285206 245 + 91889043 CAATAGACTGTTTGCTCTTAGGAGATTGGATTATGCTTTCAAA-TGAGCAAATTTACAA-------------------TTCA-----GTCCCCACCACAGTGTTTCATATGCAATGAAAT-GAAATGTCTTCTTTTC---AGAGC--------------CTTTAATAGTCCTGTCTTTGCATGTTAGTTTAGATTTAC---ACACTTATTTT-CTTAGTACTTA-----GTACTTGTACCT-TTATTTTATTCTAATAATGTGTCCTGTGATTATAAA-----------------------------------------AGGATATATGTCCATTTGGC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1198642 285 - 11655695 CAATAGACTGTCTGCTATTAGGA-AATGGATTATGCTTTTTAAATTAGCAAACCTGCAATTCCCTCTACC--------CTT---TCTACCCCCACTACAGTGTTTCATGTGCAATAAAAC-AAAATCCC---TTATCTTTAGGA---------------CTTTCAGAGTCTTA-CTTTATACGTTAGCTTGGATTTGT---ATATTCATTAT-------------------ACTTATACATGTTATTTTATTCTAATGACGAATTCTACAGTTACAAAAATTACACCTTTTTTAAAGAAACTCTTATGCATTTTTTGTTTGTTTGTTTGtttttttagg i dasNov3.JH570378 C 0 I 46 a score=62945.000000 s hg38.chr5_GL383530v1_alt 891 6 + 101241 TCTCTC s panTro5.chr5 20229472 6 + 181907262 TCTCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20246783 6 + 183735486 TCTCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4732803 6 - 13748885 TCTCTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53761926 6 - 163208435 TCTCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800067 6 - 180051392 CCTCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87904480 6 - 181584905 CCTCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1127438 6 - 8785636 CCTCTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595608 6 + 27333823 CCTCTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866024 6 - 91010382 CCTCTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977107 6 + 5179401 CCTCTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7682844 6 - 21726897 CCTCTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112501853 6 + 204313951 CCTCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44947825 6 + 71252344 CTTCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 312294 6 - 1393929 CCTCTC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1388384 4 - 15889662 CCTC-- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84804664 6 + 108143057 CCTCTC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 547270 6 - 10520994 CCTCTC i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1264168 6 - 29863360 ACTGTC i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76426446 6 + 120421639 TGCTCT i mm10.chr13 C 0 C 0 s canFam3.chr3 14285451 6 + 91889043 TTATTC i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 1198927 46 - 11655695 I a score=918441.000000 s hg38.chr5_GL383530v1_alt 897 57 + 101241 TTTAGTCACT--------------CTTTTCATACATTTTCATCGGG-AAAGAGCAAA-GACAAAGATTCACTG s panTro5.chr5 20229478 57 + 181907262 TTTAGTCACT--------------CTTTTCATACATTTTCATCGGG-AAAGAGCAAA-GACAAAGATTCACTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20246789 57 + 183735486 TTTAGTCACT--------------CTTTTCATACATTTTCATCGGG-AAAGAGCAAA-GACAAAGATTCACTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4732809 57 - 13748885 TTTGGTCACT--------------CTTTTCATACATTTTCATTGGG-AAAGAGCAAA-GACAAAGATTCACTG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53761932 57 - 163208435 TTTAGTCACT--------------CTTTTCATACATGTTCACTGGA-AAAGAGCAAA-GACAAAGATTCACCG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800073 57 - 180051392 TTTAGTAACT--------------CTTTTCATACATTTTCATTGGG-AAAGATCAAA-GACAAAGATTCACTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87904486 57 - 181584905 TTTAGTAACT--------------CTTTTCATACATTTTCATTGGG-AAAGATCAAA-GACAAAGATTCACTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1127444 57 - 8785636 TTTAGTAACT--------------CTTTTCATACATTTTCATTGGG-AAAGATCAAA-GACAAAGATTCACTG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595614 57 + 27333823 TTTAGTAACT--------------CTTTTCATACATTTTCATTGGG-AAAGATCAAA-GACAAAGATTCACTG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866030 57 - 91010382 TTTAGTAACT--------------CTTTTCATACATTTTCATTGGG-AAAGATCAAA-GACAAAGATTCACTG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977113 57 + 5179401 TTTAGTAACT--------------CTTTTCATACATTTTCATTGGG-AAAGATCAAA-GACAAAGATTCACTG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7682850 57 - 21726897 TTTAGTAACT--------------CTTTTCATACATTTTCATTGGG-AAAGATCAAA-GACAAAGATTCACTG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112501859 57 + 204313951 TTTAGTAACT--------------CTTTTCATATATTTTTATTTGG-AAAGAGCAAA-GACAAAGATTCACTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44947831 57 + 71252344 TTTAGTAACT--------------CTTTTCATACATTTTCATTGAG-AAAGAGCAAA-GGCAAAGATTCACTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 312300 57 - 1393929 TTTAGTAACT--------------CTTTTCATACATTTTCATTGGG-AAAGAGCAAA-GACAAAGATTCACTG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1388388 55 - 15889662 --TAGTAACT--------------CTTTTCATACATTTTCATTGGG-AAAGAGCAAA-GACAAAGATTCACTG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84804670 58 + 108143057 TTTAGTAACT--------------CTTGTCATACATTTTCATTGGGAAAAGGGCAAA-GAAAAATATTCACTG i micMur3.chr12 C 0 I 123 s proCoq1.NW_012147189v1 547276 57 - 10520994 TTTAGTAACT--------------CTTCTCATGCATTTTCACTGGG-AAAGTGCAAA-GGAAAATATTCACTG i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1264174 56 - 29863360 TTTAGTAACT--------------CTTCTCATGCATTTTCACTGG--AAAGTGCAAA-GACAAAGATTCACTG i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76426452 46 + 120421639 GTTGGCAACA--------------CTTTGCAAATACTTT----GGG--------AAA-AGCAGAGATTTATTC i mm10.chr13 C 0 C 0 s canFam3.chr3 14285457 57 + 91889043 TTTAGTAATT--------------CTTTTCATGAATTTTCATTGGG-AAAAAGCAAA-GACAGAGATTTACTG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1198973 72 - 11655695 ttcaaccactgaggtacacctatgccccTCATACATTTTTATTGGG-AAAGAGCAAATAGAAAAAATTCATCA i dasNov3.JH570378 I 46 C 0 a score=1861859.000000 s hg38.chr5_GL383530v1_alt 954 174 + 101241 TGGAAGGTTAAT-------ATAAGG-G--GGTACATAATATAGCTGTGTGTACTGTGTTTGCAGTACATTGTTTAATTGTGTCTTAATTA--ATTTTCTATTA-AATGTAAACTAGTGTATGTCATGTGTTATATACCTTCTTCTTGTTTTGAATGGAATTATTAAACTTCTTGTAATCA-GAGATCA------- s panTro5.chr5 20229535 170 + 181907262 TGGAAGGTTAAT-------ATAAGG-G--GGTACATAATATAGCTGTGTGTACTGTGTTTGCAGTACATTGTTTAATTGTGTC----TTA--ATTTTCTATTA-AATGTAAACTAGTGTATGTCATGTGTTATATACCTTCTTCTTGTTTTGAATGGAATTATTAAACTTCTTGTAATCA-GAGGTCA------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20246846 170 + 183735486 TGGAAGGTTAAT-------ATAAGG-G--GGTACATAATATAGCTGTGTGTACTGTGTTTGCAGTACATTGTTTAATTGTGTC----TTA--ATTTTCTATTA-AATGTAAACTAGTGTATGTCATGTGTTATATACCTTCTTCTTGTTTTGAATGGAATTATTAAACTTCTTGTAATCA-GAGGTCA------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4732866 172 - 13748885 TGGAAGGTTAAT-------ATAAGG-G--GGTACATAATATAGCTGTGTGTACTGTGTTTGCAGTACATTGTTTAATTGTGTCTTAATTA--ATTTTCTATTA-AATGTAAACTAGTGTATGTCATGTGT--TATACCTTCTTCTTGTTTTGAATGGAATTATTAAACTTCTTGTAATCA-GAGATCA------- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53761989 172 - 163208435 TGGAAGGTTAAT-------ATAAGG-G--GGTACGTAATATAGCTGTGTGTACTGTGTTTGCAGTACATTGTTTAATTGTGTCTTAATTA--ATTTTCTATTA-AATGTAAACTAGTGTATGTCATGTGT--TATACCTTCTTCTTGTTTTGAATGGAATTATTAAACTTCTTGTAATCA-GAGATCA------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800130 163 - 180051392 TAGAAGGTTAAT-------ATGAGG-G--GGTACATAATATAG---------CTGTGTTTGCAGTACATTGTTTAATTGTGTCTTAATTA--ATTTTCTATTA-AATATAAGCTAGTATATGTCATGTAT--TATACCTTCTTCTTGCTTTGAATGGAATTATTAAACTTCCTGTAATCA-GAGATCA------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87904543 163 - 181584905 TAGAAGGTTAAT-------ATGAGG-G--GGTACATAATATAG---------CTGTGTTTGCAGTACATTGTTTAATTGTGTCTTAATTA--ATTTTCTATTA-AATATAAGCTAGTATATGTCATGTAT--TATACCTTCTTCTTGTTTTGAATGGAATTATTAAACTTCCTGTAATCA-GAGATCA------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1127501 163 - 8785636 TAGAAGGTTAAT-------ATGAGG-G--GGTACATAATATAG---------CTGTGTTTGCAGTACATTGTTTAATTGTGTCTTAATTA--ATTTTCTATTA-AATATAAGCTAGTATATGTCATGTAT--TATACCTTCTTCTTGTTTTGAATGGAATTATTAAACTTCCTGTAATCA-GAGATCA------- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595671 163 + 27333823 TAGAAGGTTAAT-------ATGAGG-G--AGTACATAATATAG---------CTGTGTTTGCAGTACATTGTTTAATTGTGTCTTAATTA--ATTTTCTATTA-AATATAAGCTAGTATATGTCATGTAT--TATACCTTCTTCTTGTTTTGAATGGAATTATTAAACTTCCTGTAATCA-GAGATCA------- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866087 163 - 91010382 TGGAAGGTTAAT-------ATAAGG-G--GATACAAAATATAG---------CTGTGTTTGCAGTACATTGTTTAATTGTGTCTTAATTA--ATTTTCTATTA-AATGTAAACTAGTGTATGTCATGTGT--TATACCTTCTTCTTGTTTTGAATGGAATTATTAAACTTCTTGTAATCA-GAGATCA------- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977170 163 + 5179401 TAGAAGGTTAAT-------ATGAGG-G--GGTACATAATATAG---------CTGTGTTTGCAGTACATCGTTTAATTGTGTCTTAATTA--ATTTTCTATTA-AATGTAAGCTAGTATATGTCATGTAT--TATACCTTCTTCTTGTTTTGAATGGAATTATTAAACTTCCTGTAATCA-GAGATCA------- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7682907 159 - 21726897 TGGAAGGTTAAT-------GTAAGG-G--GGTACATAATATAG---------CTGTGTTTGCAGTACATTGTTTAATTGTGTC----TTA--ATTTTCTATTA-AATGTAAACTAGTGTATGTCATGTGT--TATACCTTCTTCTTGTTTTGAATGGAATTATTAAACTTCTTGTAATCA-GAAATCA------- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112501916 165 + 204313951 TGCAAGGATAAT-------ATAAGG-G---GTACATAATATAATAG------CTGTGTTTCCAGTGTATTGTTTAATTGCATCTTGATTA--ATTTTTGATTA-AATGTGAACCAGTGTATATCATGTGT--TATAATTTCTTCTTGTTTTGAATGGAGTTATTAAATTTATTGTGATCA-GAGATCA------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44947888 165 + 71252344 TGCAAGGATAAT-------ATAAGG-G---GTACGTAATATAATAG------CTGTGTTTCCAGTGTGTTGTTTAATTGCATCTTGATTA--ATTTTTGATTA-AATGTGAACCAGTGTATATCATGTGT--TATAACTTCTTCTTGTTTTGAATGGAGTTATTAAACTTATTGTGATCA-GAGATCA------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 312357 162 - 1393929 TGCAAGGATAAT-------ATAAGG-G---GTACATAATACAATAG------CTGTGTTTCCAGTGTGTTGTTTAATTGCATCTTGATTA--ATTTTTGATTA-AACGTGAACCAGTGTATATCATGTGT--TATAA---CTTCTTGTTTTGAATGGAGTTATTAAACTTACTGTGATCA-GAGATCA------- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1388443 165 - 15889662 TGCAAGGGTAAT-------ATAAGG-G---GTACATAATATAATAG------CTGTGTTTCCAGTGTATTGTTTAATTGCATCTTGATTA--ATTTTTGATTA-AATGTGAACCAGTGTATATCATGTGT--TATAACTTCTTCTTGTTTTGAATGGAGTTATTCAACTTATTGTGATCA-GAGATCA------- i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 547333 116 - 10520994 ------------------------------------------------------------------CATTGTTTAATTACATTTTAGTTA--ATTTTCTATTA-AATTTGAACTAATACATGTCATACAT--TATCCCTTTTTCTTGTTTTGAATGGAGTTATTAAAGTTATTGTAATCA-GAGGGAA------- i proCoq1.NW_012147189v1 C 0 I 7 s otoGar3.GL873536 1264230 114 - 29863360 ------------------------------------------------------------------CATTGCTCAATTGCATCTTGGTTA--ACTTTCTATTA-AATTTGAACAGGTACATGTCATACAG--GTACA---TTGCTTGTTTGGAATGCAATTATTAAAGTTATTGTAATCAGGAGGGAA------- i otoGar3.GL873536 C 0 I 7 s mm10.chr13 76426498 161 + 120421639 TGCAAGGATGGCCAATGCAGTAAGG-A--TATTTGTATAATGC---------TTGTGTTTGCAATGCATTGCTTGGATGAACCACCGGCATTATTTTTTATTATTATTTGGACT-----------TGTAA--TGGACCTT-TTATTCTTTTGTGTGGGATTATTAAACTTCTTGTAGTCA-GAGGTTA------- i mm10.chr13 C 0 I 17 s canFam3.chr3 14285514 164 + 91889043 TGGAAGGTTAAT-------ATGAGGTG--GGTACTTAATACATCAT------CTGTGTTTGGAGTACATTGTTTAATTGCACCTTGGTTC--ATTTTCTATTA-AATGTGAACTAGTGCGTGTCATACAC--TATCCCTTCTTCTTATTTTGAATGG---TGTTAAACTTACTGTGGTCA-GTGGGAA------- i canFam3.chr3 C 0 I 7 s dasNov3.JH570378 1199045 167 - 11655695 TGGAAAGTTAAT-------ATAAGA-GCTGGTACTTAATTTAACTT------CTATGTTTACAGTACATTATTT-TTTGTATCTTGGCTA--ATTTTCTCTTA-AATTTAAACTAGT--ACGTCATAAAT--TATTCCTTTTTCTTAGTTTGAATGGAGGTACTAAACT-----TAGTCA-GAGGAAACTTACCA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804728 123 + 108143057 I a score=1062170.000000 s hg38.chr5_GL383530v1_alt 1128 74 + 101241 AATTATACCAGGTAGATGGTTGTCCCACCCCCTGGCAGTGTTCTTACAGAGTATGTGGGTAAAAATTCTTGTAC s panTro5.chr5 20229705 72 + 181907262 AATTATACCAGGTAGATGGTTGTCCCACCCCCTGGCAGTGTTCTTACAGAGTA--TGGGTAAAAATTCTTGTAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247016 72 + 183735486 AATTATACCAGGTAGATGGTTGTCCCACCCCCTGGCAGTGTTCTTACAGAGTA--TGGGTAAAAATTCTTGTAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733038 74 - 13748885 AATTATACCAGGTAAATTGTTGTCCCACCCCCTGGCAGTGTTCTTACAGAGTATGTGGGTAAAAATTCTTGTAC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762161 73 - 163208435 AATTATACCAGGTAAATGATTGTCCCA-CCCCTGGCAGTGTTCTTACAGAGTATGTGGGTAAAAATTCTTATAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800293 74 - 180051392 AATTATACCAGGTAAACGGTTGTCCCACCCCCTTGCAGTGTTCTTACAGAGTATGTGAATAAAAATTCTTGTAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87904706 74 - 181584905 AATTATACCAGGTAAACGGTTGTCCCACCCCCTTGCAGTGTTCTTACAGAGTATGTGGATAAAAATTCTTGTAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1127664 74 - 8785636 AATTATACCAGGTAAACGGTTGTCCCACCCCCTTGCAGTGTTCTTACAGAGTATGTGGATAAAAATTCTTGTAC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595834 74 + 27333823 AATTATATCAGGTAAATGGTTGTCCCACCCCCTTGCAGTGTTCTTACAGAGTATGTGGATAAAAATTCTTGTAC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866250 74 - 91010382 AATTATACTAGGTAAACGGTTGTCCCATCCCCTTGCAGTGTTCTTACAGAGTATGTGGGTAAAAATTCTTATAC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977333 74 + 5179401 AATTATACCAGGTAAACGGTTGTCCCACCCCCTTGCAGTGTTCTTACAGAGTATGTGGATAAAAATTCTTGTAC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683066 74 - 21726897 AATTATACCAGGTAAACGGTTGTCCCACCCCCTTGCAGTGTTCTTACAGAGTATGTGGATAAAAATTCTTGTAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112502081 74 + 204313951 AATTATACCTGGTAAATTGTTGTCCCACCTCATGGCAGTGTTCTTATAAAATATGTGGATAAAAATTTTTGTAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44948053 74 + 71252344 AATTATACCTGGTATATTGTTGTCCCACCCCATGACAGTATTCTTACAAAATATGTGGATAAAAATTCTTTCAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 312519 74 - 1393929 AATTATACCTGGTAAATTGTTGTCCCACTCCATGGCAGTGTTCTTACAAAATATGTGGATAAAAATTCTTGGAC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1388608 74 - 15889662 AATTATACCTGGTAGATTGTTGTCCCATCCCATGGCAGTGTTCTTACAAAATATGTGGATAAAAATTCTTGTGC i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84804851 74 + 108143057 AATTATACCAGGTAAATGGTTATTCTATCCCCTGGCAATAATTTTATAGAGTATATGCATAAAAATTCTTGTAC i micMur3.chr12 I 123 I 1622 s proCoq1.NW_012147189v1 547456 74 - 10520994 AATTACACCAGGTAAGTGGTTATCCCATCCCCTGGCAATAATTTTATAGAGTATATGCATAAAAATTATTGTAC i proCoq1.NW_012147189v1 I 7 I 1852 s otoGar3.GL873536 1264351 74 - 29863360 AATTTTATCAGGTAAGTAGTTATTCCATCTCCTGGCAATGCTTTTATAGAGTATGTGCACAAAAATTCTTGTTT i otoGar3.GL873536 I 7 C 0 s mm10.chr13 76426676 66 + 120421639 AATTATACCAAGTAGTCA------CCCTCCTTTGGTAATACGTTTAGA-AGTTTATGGAT-AAAGTTGTTATGC i mm10.chr13 I 17 C 0 s canFam3.chr3 14285685 71 + 91889043 AATTATGCCAGGGGAGCACTTATCCCATCCTCTGGTAATGTCCTTATA---CTTGCACATAAAAATTCCTGTAA i canFam3.chr3 I 7 C 0 s dasNov3.JH570378 1199212 74 - 11655695 AATTATCTGAGGCAGGTGATTATTACATCCCATGGCAGTATTCTTGTAAGTCACATAGATAAACATTCTTGTAC i dasNov3.JH570378 C 0 C 0 a score=121289.000000 s hg38.chr5_GL383530v1_alt 1202 10 + 101241 GGT-TATGAAT s panTro5.chr5 20229777 10 + 181907262 GGT-TACGAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247088 10 + 183735486 GGT-TACGAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733112 10 - 13748885 AGT-TATGAAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762234 10 - 163208435 AGT-TATGAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800367 10 - 180051392 AGT-TATGAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87904780 10 - 181584905 AGT-TATGAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1127738 10 - 8785636 AGT-TATGAAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595908 10 + 27333823 AGT-TATGAAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866324 10 - 91010382 AGT-TATGAAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977407 10 + 5179401 AGT-TATGAAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683140 10 - 21726897 AGT-TATGAAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112502155 10 + 204313951 AGT-TATGAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44948127 10 + 71252344 AGT-TATGAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 312593 10 - 1393929 AGT-TATGAAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1388682 10 - 15889662 AGT-TATGAAT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1264425 11 - 29863360 GGTATACAGAT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76426742 11 + 120421639 AGTGTACAAGT i mm10.chr13 C 0 C 0 s canFam3.chr3 14285756 11 + 91889043 AGTCTATGAAT i canFam3.chr3 C 0 I 2 s dasNov3.JH570378 1199286 11 - 11655695 AGTATGTGAAT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 547530 1852 - 10520994 I a score=117244.000000 s hg38.chr5_GL383530v1_alt 1212 7 + 101241 -AAAAGGG s panTro5.chr5 20229787 7 + 181907262 -AAAAGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247098 7 + 183735486 -AAAAGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733122 7 - 13748885 -AAAAGGG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762244 7 - 163208435 -AAAAGGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800377 7 - 180051392 -AAAAGGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87904790 7 - 181584905 -AAAAGGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1127748 7 - 8785636 -AAAAGGG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595918 7 + 27333823 -AAAAGGG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866334 7 - 91010382 -AAAAGGG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977417 7 + 5179401 -AAAAGGG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683150 7 - 21726897 -AAAAGGG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112502165 7 + 204313951 -AAAAGGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44948137 7 + 71252344 -AAAAGGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 312603 7 - 1393929 -AAAAGGG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1388692 7 - 15889662 -AAAAGGG i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 549382 7 - 10520994 -AAAAGTG i proCoq1.NW_012147189v1 I 1852 C 0 s otoGar3.GL873536 1264436 7 - 29863360 -AAAAAGG i otoGar3.GL873536 C 0 I 1791 s mm10.chr13 76426753 7 + 120421639 -AAAGATG i mm10.chr13 C 0 I 1 s canFam3.chr3 14285769 7 + 91889043 -AAAATGG i canFam3.chr3 I 2 C 0 s dasNov3.JH570378 1199297 8 - 11655695 AAAAAAGG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I a score=3180714.000000 s hg38.chr5_GL383530v1_alt 1219 251 + 101241 ATATTTTAGAAATGAAGTTT-TGTTTCTAAAAAG-GATGGTAATTTTCATGCACATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCACCTTATGTGTTCTCACCTCCATTTTATCCTCTTGCATATTCTGCTAGTGGCCATGTAAACTGCTGTACTTATTG--TATTAGTTGCTGATTTTCATTTTCC-AACAT--ACCAAGTACTCTTTCCTTGAATGATT--TATG--TTAGACAGCATTGGCT--------------------------------------------------------CATGGCAACAGAC------AGTTTTAGAAAATCATC s panTro5.chr5 20229794 253 + 181907262 ATATTTTAGAAATGAAGTTT-TGTTTCTAAAAAG-GATGGTAATTTTCACGCACATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCATCTTATGTGTTCTCACCTCCATTTTATCCTCTTGCATATTCTGCTAGTGGCCATGTAAACTGCTGTACTTATTG--TATTAGTTGCTGATTTTCATTTTCC-AACAT--ACCAAGTACTCTTTCCTTGAATGATTTATATG--TTAGACAGCATTGGCT--------------------------------------------------------CATGGCAACAGAC------AGTTTTAGAAAATCATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247105 253 + 183735486 ATATTTTAGAAATGAAGTTT-TGTTTCTAAAAAG-GATGGTAATTTTCACGCACATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCATCTTATGTGTTCTCACCTCCATTTTATCCTCTTGCATATTCTGCTAGTGGCCATGTAAACTGCTGTACTTATTG--TATTAGTTGCTGATTTTCATTTTCC-AACAT--ACCAAGTACTCTTTCCTTGAATGATTTATATG--TTAGACAGCATTGGCT--------------------------------------------------------CATGGCAACAGAC------AGTTTTAGAAAATCATC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733129 252 - 13748885 ATATTTTAGAAATGAAGTTT-TGTTTCT-AAAAG-GATGGTAATTTTCACACACATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCACCTTATGTGTTCTCACCTCCATTTTATCCTCTTGCATATTCTGCTAGTGGCCATGTAAACTGCTGTACTTATTG--TATTAGTTGCTGATTTTCATTTTCC-AACAT--ACCAAGTACTCTTTCCTTGAATGATTTATATG--TTAGACAGCATTGGCT--------------------------------------------------------CATGGCAACAGAC------AGTTTTAGAAAATCATC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762251 253 - 163208435 ATATTTTAGAAATGAAGTTT-TGTTTCTAAAATG-GATGGTAATTTGCATGGACATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCATCTTATGTGTTCTCACCTCCATTCTATCCTCTTGCATATTCTGCTAGTGGCCATGTAAACTGCTGTACTTATTG--TATTAGTTGCTGATTTTCATTTTCC-AACAT--ACCAAGTGCTCTTTCTTTGAATGATTTATATG--TTAGACAGCATTGGCT--------------------------------------------------------CATGGTAACAGAC------AGTTTTAGAAAATCATC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800384 254 - 180051392 ATATTTTAGAAATGAAGTTT-TGTTTCTAAAAAGAAATGGTAATTTTCACGCACATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCATCTTATGGGTTCTCACCTTCATCTTATCCTCTTGCATATTCTGCTAGTGGCCATGTAAACTGCTGTAGTTATTT--TATTAGTTGCTCATTTTCATTTTCC-AACAT--ACCAACGACTCTTTCCTTGAATGATTTCTGTG--TCAGACAGCATTGGCT--------------------------------------------------------CATGGCAACAGAC------AGTTTTAGAAAATCATC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87904797 254 - 181584905 ATATTTTAGAAATGAAGTTT-TGTTTCTAAAAAGAAATGGTAATTTTCACGCACATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCATCTTATGGGTTCTCACCTCCATCTTATCCTCTTGCATATTCTGCTAGTGGCCATGTAAACTGCTGTAGTTATTT--TATTAGTTGCTCATTTTCATTTTCC-AACAT--ACCAACGACTCTTTCCTTGAATGATTTCTGTG--TCAGACAGCATTGGCT--------------------------------------------------------CATGGCAACAGAC------AGTTTTAGAAAATCATC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1127755 254 - 8785636 ATATTTTAGAAATGAAGTTT-TGTTTCTAAAAAGAAATGGTAATTTTCACGCACATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCATCTTATGGGTTCTCACCTCCATCTTATCCTCTTGCATATTCTGCTAGTGGCCATGTAAACTGCTGTAGTTATTT--TATTAGTTGCTCATTTTCATTTTCC-AACAT--ACCAACGACTCTTTCCTTGAATGATTTCTGTG--TCAGATAGCATTGGCT--------------------------------------------------------CATGGCAACAGAC------AGTTTTAGAAAATCATC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1595925 254 + 27333823 GTATTTTAGAAATGAAGTTT-TGTTTCTAAAAAGAAATGGTAATTTTCACGCACATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCATCTTATGGGTTCTCACCTCCATCTTATCCTCTTGCATATTCTGCTAGTGGCCATGTAAACTGCTGTAGTTATTT--TATTAGTTGCTCATTTTCATTTTCC-AACAT--ACCAACGACTCTGTCCTTGAATGATTTCTGTG--TCAGACAGCATTGGCT--------------------------------------------------------CATGGCAACAGTT------AGTTTTAGAAAATCATC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866341 254 - 91010382 ATATTTTAGAAATGAAATTT-TGTTTCTAAAAAGAAACGGTAATTTTCATGCACATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCATCATATGTGTTCTCACCTCCATCTTATCCTCTTGCATATTCTGCTAGTGGCCATGTAAACTGCTATAGTTATTT--TATTAGTTGCTCATTTTCATTTTCC-AACAT--ACCAATGACTCTTTCCTTGAATGATTTCTATG--TCAGACAGCATTGGCT--------------------------------------------------------CATGGCAACAGAC------AGTTTTAGAAAATCATC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977424 254 + 5179401 ATATTTTAGAAATGAAGTTT-TGTTTCTAAAAAGAAATGGTAATTTTCACGCACATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCATCTTATGGGTTCTCACCTCCATCTTATCCTCTTGCATATTCTGCTAGTGGCCATGTAAACTGCTGTAGTTATTT--TATTAGTTGCTCATTTTCATTTTCC-AACAT--ACCAACGACTCTTTCCTTGAATGATTTCTGTG--TCAGACAGCATTGACT--------------------------------------------------------CATGGCAACAGAC------AGTTTTAGAAAATCATC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683157 254 - 21726897 ATATTTTAGAAATGAAGTTT-TGTTTCTAAAAAGAAATGGTAATTTTCACGCACATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCATCTTATGTGTTCTCACCTCCATCTTATCCTCTTGCATATTCTGCTAGTGGCCATGTAAACTGCTGTAGTTATTT--TATTAGTTGCTCATTTTCATTTTCC-AACAT--ACCAACTACTCTTTCCTTGAATGATTTATATG--TCAGACAACGTTGGCT--------------------------------------------------------TATGGCAACAGAC------AGTTTTAGAAAATCATC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112502172 253 + 204313951 TTATCTTAGAAATGAAGTTT-TGTTTCTAAAAAA-GACCATAATTTTCATTCACATAAAA--CTAAGAAAAA-----------------------------------------------------------------CCATTTTATGTGTTCTCACCTTCATCTTATCCTCTTGCATATTCTGCTAGTGGCCATGTGAACTGCTGTACTTACTG--TATTAGCTGCTGATTTTCATTTTCC-AACAT--ACCAAGTACTCTTTCCTTGAATGATCTATATG--TTAGACAGCAATGGTT--------------------------------------------------------CTTGGCAACAGAT------TGTTTTAGAAAACCATC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44948144 248 + 71252344 GCATTTTAGAAATGAA------GTTTCTAAAAAA-GGGAGTAATTTTCATTTACATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCATCTTACGTGTTCTCACCTTCATCTTATCCTCTTGCATATTCTGCTAATGGCCATGTAAACTGCTGTACTTACTG--TATTAGCCACTGATTTTCATTTTCC-AACAT--ACCAAGTACTCTTTCTTTGAATGATTTATATG--TTAGACAGCATTGGTT--------------------------------------------------------CTTGGCAACAGAC------TGTTTTAGAAAATCATC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 312610 252 - 1393929 GTATTTTAGAAATGAAGTTT-TGTTTCTAAAAAA-GACAGTAATTTTCATTCACATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCATCTTATGTGTTCTCACCTTCATCTTATCCTCTTGCATATTCTGCTGGTGGCCATGTAAACTGCTGTACTTCCTG--TATTAGCTGCTGATTTTCATTTTCC-AACAT--ACCAAGTATTCTTTCCTTGAATGATTTATATG--TTAAACAGCA-TGGTT--------------------------------------------------------CTTGGCAACAGGC------TGTTTTAGAAAATCATC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1388699 253 - 15889662 ATATTTTAGAAATGAAGTTT-TGTTTCAAAAAAA-GGCAGTAATTTTCATTCGCATAAAA--CTAAGAAAAT-----------------------------------------------------------------CCATCTTATGTGTTCTCACCTTCATCTTATCCTCTTGCATATTCTGCTAGTGGCCATGTAAACTGCTGTACTTACTG--TATTAGCTGCTGATTTTCATTTTCC-AACAT--ACCAAGTACTCTTTCCTTGAATGATTTATATG--TTAGACAGCATTGGTT--------------------------------------------------------CTTGGCAACAGAC------TGTTTTAGAAAATCATC i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 549389 249 - 10520994 ATATTTTAGAAACAAAGTTT-TGTTTCTAAGAAA-AGGAATAATTTTCATGTACATGGAA--TTAAGAAAAT-----------------------------------------------------------------CTATCTTATGTGTTCTCAC-----TCTCAGCTTCTTGCATATTCTGCTAGTTACCTTGTAATCTGCTATACTTATTA--TACCAGTTGCTGGTTTTCATTTTCCAAACAC--ACCAAGTATTTTTTCCTTCAATGATTTATATG--TTAGACAGCATTGGTA--------------------------------------------------------CATGGCTACAAAC------TGTTTTTAAAAACCATC i proCoq1.NW_012147189v1 C 0 I 34 s otoGar3.GL873536 1266234 240 - 29863360 ATATTTTAGAAATAAAGTTT-TATTTCCAAGAAA-AGGAGT-ATTTTCATGTGCATGGAA--TTATGAAAAC-----------------------------------------------------------------CCATTTCATGTGCTCTCACGCCCTTCTTAGCTTCTTGCGTCTTCTGCTGGTTTCCTTCCAATCTGCTGTACCAATTA--TACTA-TCACTGATTTTCATTGTTCAAACAT--TCCAAGTGTTACTTCCTTGAATGATT--TATG--TTAGACAGCATTGGCA---------------------------------------------------------------GCCAAC------TATTTTTACAAGTC--- i otoGar3.GL873536 I 1791 C 0 s mm10.chr13 76426761 245 + 120421639 ATATTTTAGAAAGAAGGCTCGCATGTCCAA-----GTCAGTTATTGGAATG-ATATTCAA--TTAAGAGATT-----------------------------------------------------------------GTGTATTATGCGTATTCTCCCTTGCCTTGGCT--TTGGA---TCTGCAGTCTCCTTTGTCATCTTCTCTACATACTGTATATGAGCTGCAGGTTTTCATCTTAC-AACTTGGGCCAGGAATGCTTTCCCTGAAAGATTTGTGCA--TTAGTCAGCATTGGTC--------------------------------------------------------CCAGGTCACAAAC------TATTTGTCAAAACA--- i mm10.chr13 I 1 C 0 s canFam3.chr3 14285776 323 + 91889043 GTATTTTAGAAATAAGCCTT-TATTTCTAAAAAA-GACAGTGatttttatatagataaaa--ttttaaaaattttataGGTGAAATTTTATAGATGAAATTTTAAATTTATAGAATTTACAGATGAAATTTAAAAAATCATCTCATGTGTTCTCACC----CCTTCATCTCTTGTATATTCTTCTAGTTGCCTTATAACCTGCCATATCTATTG--TATTAGCTGGTGACTTTCATTTTCCAAACAT--ACCAAATATTCTTTCCTTAAATGACTTGAATGATTTATACCTTATTGGCA--------------------------------------------------------CTTGATAAAAAACTATTGGTATTTTTTGCAACAGTC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1199305 306 - 11655695 ATATTTCAGAAATAGAATTC-TATTT-TATAAAA-GGTAGCTATTTTTGTATAACTGGAATTTTTGAAAAAA-----------------------------------------------------------------GCAACTTACATGTTCT--CTTACATCTTGGTCTCTTTTATATTCTGCCAGCTACCTTGGAATCTGCCACCTTTATTA--TACTAGCTGCCAATTGTTATTTTCCAAACAT--ATCAAGTATTCTTTTATTGATTGATTAATATG--TTAGTTAACATCGGCTATATGACATTTTCCCTTAAACAGTGTCTCTTAAGGGTATGGAAGTAGCCTTAAAATTAAGACAGCCAAC------TATTTTTAAATGTC--- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I a score=471040.000000 s hg38.chr5_GL383530v1_alt 1470 36 + 101241 ATCTGGAATGTATATAAAATGATCTTGTTTGTCAGT s panTro5.chr5 20230047 36 + 181907262 ATCTGGAATGTATATAAAATGATCTTGTTTGTCAGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247358 36 + 183735486 ATCTGGAATGTATATAAAATGATCTTGTTTGTCAGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733381 36 - 13748885 ATCTGGAATGTATGTAAAATGATCTTGTTTGTCAGT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762504 36 - 163208435 ATCTGGAATGTATATAAAATGACCTTGTTTGTCAGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800638 36 - 180051392 ATCTGGAATGTATATAAAATGACCTTGTTTGTCAGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905051 36 - 181584905 ATCTGGAATGTATATAAAATGACCTTGTTTGTCAGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128009 36 - 8785636 ATCTGGAATGTATATAAAATGACCTTGTTTGTCAGT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596179 36 + 27333823 ATCTGGAATGTATATAAAATGACCTTGTTTGTCAGT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866595 36 - 91010382 ATCTGGAATGTATATAAAATGACCTTGTCAGTCAGT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977678 36 + 5179401 ATCTGGAATGTATATAAAATGACCTTGTTTGTCAGT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683411 36 - 21726897 ATCTGGAATGTATATAAAATGACCTTGTTTGTCAGT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112502425 36 + 204313951 ATCTGGAATGTATATAAAATGACCTTGTTTGTCGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44948392 36 + 71252344 ATCTGGAATGTATATAAAATGACCTTGTTTGTCGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 312862 36 - 1393929 ATCTGGAATGTATATAAAATGACCTTGTCTTTCAAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1388952 36 - 15889662 ATCTGGAATGTATACAAAATGACCTTGTTTGTTGAT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1266474 36 - 29863360 ATCTGGAATGTACACAAAATGACTGTATTTGTCAGT i otoGar3.GL873536 C 0 I 1 s mm10.chr13 76427006 29 + 120421639 AGCTTGAATGTAAGTAAAGTGACCCTTTT------- i mm10.chr13 C 0 C 0 s canFam3.chr3 14286099 35 + 91889043 ATCTAGAAGATACATAAAATGACC-TATTTTTCTGT i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1199611 25 - 11655695 TTCCGGAATGTACATAAAATGACTT----------- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549638 34 - 10520994 I a score=2152325.000000 s hg38.chr5_GL383530v1_alt 1506 152 + 101241 CTACCTAGGT-TGTTAATGTCAAATTAGATGGGCAAATTGCCAAATTATTGTTAGAATTGAGCTATATTTGCTACAGTG--CTTAATCCTTGGGAATTAAATCAGTTCCATTGACAGTATGGGGCCAAATATATATGA-TTTTAGCTTGCTCTGCC- s panTro5.chr5 20230083 152 + 181907262 CTACCTAGGT-TGTTAATGTCAAATTAGATGGGCAAATTGCCAAATTATTGTTAGAATTGAGCTATATTTGCTACAGTG--CTTAATCCTTGGGAATTAAATCAGTTCCATTGACAGTATGGGGCCCAATATATATGA-TTTTAGCTTGCTCTGCC- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247394 152 + 183735486 CTACCTAGGT-TGTTAATGTCAAATTAGATGGGCAAATTGCCAAATTATTGTTAGAATTGAGCTATATTTGCTACAGTG--CTTAATCCTTGGGAATTAAATCAGTTCCATTGACAGTATGGGGCCCAATATATATGA-TTTTAGCTTGCTCTGCC- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733417 152 - 13748885 CTACCTAGGT-TGTTAATGTCAAATTAGATGGGCAAATTGCCAAATTATTTTTAGAATTGAGCTATATTTGCTACAGTG--CTTAATCCTTGGGAATTAAATCAGTTCCATTGACAGTATGGGGCCCAGTATATATGA-TTTTAGCGTGCTCTGCC- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762540 152 - 163208435 CTACCTAGGT-TGTTAATGTCAAATTAGACGGGCAGATTGCCAAATTATTGTTAGAATTGAGCCATGTTTGCTACAGTG--CTTAATCCTTGGGAATTAAATCAGTTCCATTGACAGTATGGGGCCCAATATATATGA-TTTTAGCTTGCTCTGCC- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800674 152 - 180051392 CTGCCTAGGT-TGTTAATGCCACATTAGATGGGCAGATTGCCAAATTATTGTTAGAATTGAGCTATATTTGCTACAGCG--CTTAATTCTTGGGAATTAAATCAGTTCCATTGACAGTATGCAGCCCAATATATATGA-TTTTAGCTTGCTCTGCC- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905087 152 - 181584905 CTGCCTAGGT-TGTTAATGCCACATTAGATGGGCAGATTGCCAAATTATTGTTAGAATTGAGCTATATTTGCTACAGCG--CTTAATTCTTGGGAATTAAATCAGTTCCATTGACAGTATGCAGCCCAATATATATGA-TTTTAGCTTGCTCTGCC- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128045 152 - 8785636 CTGCCTAGGT-TGTTAATGCCACATTAGATGGGCAGATTGCCAAATTATTGTTAGAATTGAGCTATATTTGCTACAGCG--CTTAATTCTTGGGAATTAAATCAGTTCCATTGACAGTATGCAGCCCAATATATATGA-TTTTAGCTTGCTCTGCC- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596215 152 + 27333823 CTGCCTAGGT-TGTTAATGCCACATTAGATGGGCAGATTGCCAAATTATTGTTAGAATTGAGCTATCTTTGCTACAGCG--CTTAATTCTTGGGAATTAAATCAGTTCCATTGACAGTATGCAGCCCAATATATATGA-TTTTAGCTTGCTCTGCC- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866631 152 - 91010382 CTGCCTAGGT-TGTTAATGCCACATTAGATGGGCAGATTGCCAAATTATTGTTAGAAGTGAGCTATATTTGCTATAGTG--CTTAATCCTTGGGAATTAAATCAGTTCCACTGACAGTATGTGGCCCAATATATATGA-TTTTAGCTTGCTCTGCC- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977714 152 + 5179401 CTGCCTAGGT-TGTTAATGCCACATTAGATGGGCAGGTTGCCAAATTATTGTTAGAATTGAGCTATCTTTGCTACAGCG--CTTAATTCTTGGGAATTAAATCAGTTCCATTGACAGTATGCAGCCCAATATATATGA-TTTTAGCTTGCTCTGCC- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683447 152 - 21726897 CTGCCTGGGT-TGTTAATGCCACATTAGATGGGCAGATTGCCAAATTATTGTTAGAATTGAGCTATATTTGCTACAGTG--CTTAATCTTTGGGAATTAAATCAGTTCCATTGACAGTATGCGGCCCAATATATATGA-TTTTAACTTGCTCTGCC- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112502461 151 + 204313951 CTACCTAGGT-TGATAATGCCATATTAGATGGGC-AATTACCAAATTATTGTTAGAATTGAGTTATATTTGCTACAGTG--CTTAATCCTTGGTAATTAAATCAGTTCCATTGACAGTATGGGGTCCAATATATATGC-TTTTAGCTTGCTGTGCC- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44948428 153 + 71252344 CTATCTATCTATGATAATGCCATATTAGATGGGCAAATTACCAAATTATTGTTAGAATTGAGCTATATTTGCTACAGTG--CTTAATCCTTGGAAATTAAATCAGTTCCATTGACAGTATGGGGTCCAATATATATGA-TTTTAGCTTGCTCTGCC- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 312898 151 - 1393929 CTACGTAGGT-TGATAATGCCATATTAGATGGGCAAATTACCAAATTATTGTTAGAATTAAGCTATATTTGCTACAGTG--ATTAATCCTTGGGAATTAAATCAGTTCCATTAACCGTATGGGGTCCAATATATATGA--TTTAACTTGCCCTGCC- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1388988 152 - 15889662 CTACCTAGGT-TGATAATGCCATATTAGATGGGCAAATTACCAAATTATTGTTAGAATTGAGCTATATTTGCTACAGTG--CTTAATCCTTGGGAATTAAATCAGTTCCATTGACAGTATGGGGTCCAATATATATGA-TTTTAGCTTGCTCTGCC- i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 549672 152 - 10520994 CTGCCTAGGT-TGTTAATGCATCATTAGATGGGAAGATTGCCAAATTATTGATAGAATTGTGCTACATTTGCTATAGTG--CTTAATCCTTGGGAATTATATCAATCTCATTGACAGTATGGGGTCCCATATTTATGA-TTTTAGCTTGCTCTGCC- i proCoq1.NW_012147189v1 I 34 I 250 s otoGar3.GL873536 1266511 145 - 29863360 CTGCCTGGGT-TGTT----CATCATCAGATGGGGAGATGAGCAAATCATC-ATAGAACTGAGCTTCATTTGCTATCATG---TGAATCCTTGGTAA-TACATCAATCCCAGTGACAGTATGGAGTCCTATATTTATGA-TTTTAGCTTGCTCTGCC- i otoGar3.GL873536 I 1 C 0 s mm10.chr13 76427035 143 + 120421639 CTGCATAGGT------ATGC--TGTTTAGTAGGTAGGTTGCCAAGTTATCATCAAAATCAAACTATATTTTCCATAGTA--CTGACTCCTCAG-AATTAAATTAGCCCGGTTGACA-TGTGGGATGCCACATTTATGA-TTTTATCTAGGTCCTCC- i mm10.chr13 C 0 C 0 s canFam3.chr3 14286135 142 + 91889043 CTGCCAAGGT-TGTTAATGCATTATTAAATGGGCAGATTGCCAAGTTATTGATAGACTTGAACTGCATTTGCTGCAGTGTTTTTAATCTTTGAGAATTAA------TCTACTGACAGTATGGAGTCCAATATT----A-TTTTAG-TTGTTCCTC-- i canFam3.chr3 I 1 C 0 s dasNov3.JH570378 1199636 154 - 11655695 CTACTTAGGT-TGCCAATGCATCATTAGATGAACAGATTGCCAGATTATTGGTAAAATTAAGCTGTATTTACTACAATG--CTTAATTTTGGGGAATTGAATCAATCCTATTGCCAGTATGGGGTCTGGCATTTGTAATTTTTTGCTTGCTTCTCTT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I a score=561541.000000 s hg38.chr5_GL383530v1_alt 1658 53 + 101241 CTATCTAGATAC-TTTTTTTGTCAAAGCAAAGACAGAAAA-AA--TG--AGAATTAAGA s panTro5.chr5 20230235 54 + 181907262 CTATCTAGATACTTTTTTTTGTCAAAGCAAAGACAGAAAA-AA--TG--AGAATTAAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247546 53 + 183735486 CTATCTAGATAC-TTTTTTTGTCAAAGCAAAGACAGAAAA-AA--TG--AGAATTAAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733569 53 - 13748885 CTATCTAGATAC-TTTTTTTGTCAAAGCAAAGACAGAAAA-AA--TG--AGAATTAAGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762692 53 - 163208435 CCATCTAGATAC-TTTTTTTGTCAAAGCAAAGACAGAAAA-AA--TG--AGAATTAAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800826 54 - 180051392 CCATCTAGTTACTTTTTTCTGCCAAAACAAAGGCAGAAAA-AA--TG--AGAATTAAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905239 54 - 181584905 CCATCTAGTTACTTTTTTCTGCCAAAACAAAGGCAGAAAA-AA--TG--AGAATTAAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128197 54 - 8785636 CCATCTAGTTACTTTTTTCTGCCAAAACAAAGGCAGAAAA-AA--TG--AGAATTAAGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596367 54 + 27333823 CCATCTAGTTACTTTTTTCTGCCAAAGCAAAGGCAGAAAA-AA--TG--AGAATTAAGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866783 54 - 91010382 CCATCTAGTTACTTTTTTCTGCCAAAGCAAAGGCAGAAAA-AA--TG--AGAATTAAGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977866 54 + 5179401 CCATCTAGTTACTTTTTTCTGCCAAAGCAAAGGCAGAAAA-AA--TG--AGAATTAAGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683599 54 - 21726897 CCATCTAGTTACTTTTTTCTGCCAAAGCAAAGGCAGAAAA-AT--TG--AGAATTAAGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112502612 50 + 204313951 CCATCTAGTTAT----TTTTGTCAAAGCAAAGGCAGAAAA-AA--TG--AGAATTAAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44948581 50 + 71252344 CCATCTAGTTAT----TTTTGTCAAAGCAAAGGAAGAAAA-AA--TG--AGAATTAAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 313049 50 - 1393929 CCATCTAATTAT----TTTTGTCAAAGCAAAGGCAGAAAA-AA--TG--AGAATTAAGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1389140 50 - 15889662 TCATCTAGTTAT----TTTTGTCAAAGCAAAGGCAGAAAA-AA--TG--AGAATTAAGA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1266656 52 - 29863360 TCATCTATTTAT---TATttaatacagttattctagaaac-aa--tggtagtaatagg- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76427178 51 + 120421639 -CATCTGTTTAT---TATCTGTCAAAATAAAAGTAGAAAACCA--TG--AGGATTAGGA i mm10.chr13 C 0 I 373 s canFam3.chr3 14286277 48 + 91889043 ----ATGTCTAT---TATCTGTGAAACTAAAGGCAGAAAA-AAG-TG--AGGATTAGGA i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1199790 53 - 11655695 CCATTTATTTAT---TATTTATCAGAATGGACTCAGAAAA-AAATTG--TGAATTAGGA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I a score=3560.000000 s hg38.chr5_GL383530v1_alt 1711 1 + 101241 -A s panTro5.chr5 20230289 1 + 181907262 -A i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247599 1 + 183735486 -A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733622 1 - 13748885 -A i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762745 1 - 163208435 -A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800880 1 - 180051392 -A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905293 1 - 181584905 -A i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128251 1 - 8785636 -A i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596421 1 + 27333823 -A i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866837 1 - 91010382 -A i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977920 1 + 5179401 -A i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683653 1 - 21726897 -A i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112502662 1 + 204313951 -A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44948631 1 + 71252344 -A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 313099 1 - 1393929 -A i cebCap1.NW_016107830v1 C 0 I 638 s aotNan1.NW_018506370v1 1389190 1 - 15889662 -A i aotNan1.NW_018506370v1 C 0 I 822 s dasNov3.JH570378 1199843 1 - 11655695 C- i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14286325 1 + 91889043 I e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1266708 0 - 29863360 C a score=30570.000000 s hg38.chr5_GL383530v1_alt 1712 5 + 101241 TATGA-- s panTro5.chr5 20230290 5 + 181907262 TATGA-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247600 5 + 183735486 TATGA-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733623 5 - 13748885 TATGA-- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762746 5 - 163208435 TATGA-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800881 5 - 180051392 TGTGA-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905294 5 - 181584905 TGTGA-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128252 5 - 8785636 TGTGA-- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596422 5 + 27333823 TGTGA-- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866838 5 - 91010382 TGTGA-- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977921 5 + 5179401 TGTGA-- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683654 5 - 21726897 TGTGA-- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112502663 5 + 204313951 GGTGA-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44948632 5 + 71252344 GGTGA-- i saiBol1.JH378106 C 0 I 587 s otoGar3.GL873536 1266708 5 - 29863360 tacta-- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14286326 5 + 91889043 TGTGA-- i canFam3.chr3 I 1 C 0 s dasNov3.JH570378 1199844 5 - 11655695 --TGCAT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e mm10.chr13 76427229 373 + 120421639 I e aotNan1.NW_018506370v1 1389191 822 - 15889662 I e cebCap1.NW_016107830v1 313100 638 - 1393929 I a score=28961.000000 s hg38.chr5_GL383530v1_alt 1717 5 + 101241 CTCTA s panTro5.chr5 20230295 5 + 181907262 CTCTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247605 5 + 183735486 CTCTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733628 5 - 13748885 CTCTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762751 5 - 163208435 CTCTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800886 5 - 180051392 CTCTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905299 5 - 181584905 CTCTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128257 5 - 8785636 CTCTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596427 5 + 27333823 CTCTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866843 5 - 91010382 CTCTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977926 5 + 5179401 CTCTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683659 5 - 21726897 CTCTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112502668 5 + 204313951 CAcca i calJac3.chr2 C 0 I 274 s otoGar3.GL873536 1266713 2 - 29863360 --tt- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14286331 5 + 91889043 TTATA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1199849 5 - 11655695 TTGTA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e mm10.chr13 76427229 373 + 120421639 I e aotNan1.NW_018506370v1 1389191 822 - 15889662 I e cebCap1.NW_016107830v1 313100 638 - 1393929 I e saiBol1.JH378106 44948637 587 + 71252344 I a score=89841.000000 s hg38.chr5_GL383530v1_alt 1722 19 + 101241 CACATTCTTAATAG--GAAAA s panTro5.chr5 20230300 19 + 181907262 CACATTCTTAATAG--GAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247610 19 + 183735486 CACATTCTTAATAG--GAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733633 19 - 13748885 CACATTCTTAATAG--GAAAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762756 19 - 163208435 CACATTCTTAACAG--GAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800891 19 - 180051392 CACATTCTTAAAAG--GAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905304 19 - 181584905 CACATTCTTAAAAG--GAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128262 19 - 8785636 CACATTCTTAAAAG--GAAAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596432 19 + 27333823 CACATTCTTAAAAG--GAAAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866848 19 - 91010382 CACATTCTTAATAG--GAAAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977931 19 + 5179401 CACATTCTTAAAAG--GAAAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683664 19 - 21726897 CACATTCTTAATAG--GAAAA i colAng1.NW_012115488v1 C 0 C 0 s otoGar3.GL873536 1266715 18 - 29863360 ---atccttaacagttgaaaa i otoGar3.GL873536 C 0 I 345 s canFam3.chr3 14286336 5 + 91889043 TATGT---------------- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1199854 5 - 11655695 CATGT---------------- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e mm10.chr13 76427229 373 + 120421639 I e aotNan1.NW_018506370v1 1389191 822 - 15889662 I e cebCap1.NW_016107830v1 313100 638 - 1393929 I e saiBol1.JH378106 44948637 587 + 71252344 I e calJac3.chr2 112502673 274 + 204313951 I a score=75325.000000 s hg38.chr5_GL383530v1_alt 1741 25 + 101241 TTAGGGAAAATAGGAATGAGTGCCT s panTro5.chr5 20230319 25 + 181907262 TTAGGGAAAATAGGAATGAGTGCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247629 25 + 183735486 TTAGGGAAAATAGGAATGAGTGCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733652 25 - 13748885 TTAGGGAAAATAGGAATGAGTGCCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762775 25 - 163208435 TTAGGGAAAATAGGAATGAGTGCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800910 16 - 180051392 ATAGGGAAAATAGGAA--------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905323 16 - 181584905 ATAGGGAAAATAGGAA--------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128281 16 - 8785636 ATAGGGAAAATAGGAA--------- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596451 16 + 27333823 ATAGGGAAAATAGGAA--------- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866867 16 - 91010382 ATAGGGAAAATAGGAA--------- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977950 16 + 5179401 ATAGGGAAAATAGGAA--------- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683683 16 - 21726897 ATAAGGAAAATAGGAA--------- i colAng1.NW_012115488v1 C 0 C 0 e canFam3.chr3 14286341 0 + 91889043 C e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e dasNov3.JH570378 1199859 0 - 11655695 C e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1266733 345 - 29863360 I e aotNan1.NW_018506370v1 1389191 822 - 15889662 I e cebCap1.NW_016107830v1 313100 638 - 1393929 I e saiBol1.JH378106 44948637 587 + 71252344 I e calJac3.chr2 112502673 274 + 204313951 I a score=14195.000000 s hg38.chr5_GL383530v1_alt 1766 19 + 101241 AAGAAATAAAAAAATAGGG s panTro5.chr5 20230344 18 + 181907262 AAGAAAC-AAAGAATAGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247654 18 + 183735486 AAGAAAT-AAAAAATAGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733677 18 - 13748885 AAGAAAT-AAAAAATAGGG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762800 18 - 163208435 AAGAAAT-AAAAAATAGGG i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 112502947 19 + 204313951 aagaaaaaaaagaaTGTGA i calJac3.chr2 I 274 I 14 s saiBol1.JH378106 44949224 19 + 71252344 aaaaaaaaaaagaaTGTGA i saiBol1.JH378106 I 587 I 14 s canFam3.chr3 14286341 3 + 91889043 ----------------GGG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1199859 3 - 11655695 ----------------GGG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1266733 345 - 29863360 I e aotNan1.NW_018506370v1 1389191 822 - 15889662 I e cebCap1.NW_016107830v1 313100 638 - 1393929 I e colAng1.NW_012115488v1 7683699 0 - 21726897 C e manLeu1.NW_012103732v1 1977966 0 + 5179401 C e chlSab2.chr4 1866883 0 - 91010382 C e cerAty1.NW_012002401v1 1596467 0 + 27333823 C e macNem1.NW_012011400v1 1128297 0 - 8785636 C e macFas5.chr6 87905339 0 - 181584905 C e rheMac8.chr6 87800926 0 - 180051392 C a score=133845.000000 s hg38.chr5_GL383530v1_alt 1785 21 + 101241 AAAAATAGGAATGGAGCGCCT s panTro5.chr5 20230362 21 + 181907262 AAAAATAGGAATGGAGTGCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247672 21 + 183735486 AAAAATAGGAATGGAGTGCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733695 21 - 13748885 AAAAATAGGAATGGAGTGCCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762818 21 - 163208435 AAAAATAGGAGTGGAGTACCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800926 10 - 180051392 -----------TGGAGTGCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905339 10 - 181584905 -----------TGGAGTGCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128297 10 - 8785636 -----------TGGAGTGCCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596467 10 + 27333823 -----------TGGAGTGCCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866883 10 - 91010382 -----------TGGACTGCCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977966 10 + 5179401 -----------TGGAGTGCCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683699 10 - 21726897 -----------TGGAGTGCCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112502980 21 + 204313951 AAAAATAGGAATGGAGTGCCT i calJac3.chr2 I 14 I 161 s saiBol1.JH378106 44949257 21 + 71252344 AAAAATAGGAATGGAGTGCCT i saiBol1.JH378106 I 14 I 161 s cebCap1.NW_016107830v1 313738 21 - 1393929 AAAAATAGGAATGGAGTGCCT i cebCap1.NW_016107830v1 I 638 C 0 s canFam3.chr3 14286344 21 + 91889043 AAAAATAGGAACGGAGTTCCT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1199862 21 - 11655695 AAAAATAAGAATGGAGTTCCC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1266733 345 - 29863360 I e aotNan1.NW_018506370v1 1389191 822 - 15889662 I a score=51321.000000 s hg38.chr5_GL383530v1_alt 1806 5 + 101241 AAGAA s panTro5.chr5 20230383 5 + 181907262 AAGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247693 5 + 183735486 AAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733716 5 - 13748885 AAGAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762839 5 - 163208435 AAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800936 5 - 180051392 AAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905349 5 - 181584905 AAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128307 5 - 8785636 AAGAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596477 5 + 27333823 AAGAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866893 5 - 91010382 AAGAC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977976 5 + 5179401 AAGAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683709 5 - 21726897 AAGAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112503162 5 + 204313951 aaGAA i calJac3.chr2 I 161 C 0 s saiBol1.JH378106 44949439 5 + 71252344 aagaa i saiBol1.JH378106 I 161 C 0 s cebCap1.NW_016107830v1 313759 5 - 1393929 AAGAA i cebCap1.NW_016107830v1 C 0 I 162 s canFam3.chr3 14286365 5 + 91889043 ACAAA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1199883 5 - 11655695 AAGAT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1266733 345 - 29863360 I e aotNan1.NW_018506370v1 1389191 822 - 15889662 I a score=7161.000000 s hg38.chr5_GL383530v1_alt 1811 2 + 101241 AT s panTro5.chr5 20230388 2 + 181907262 AT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247698 2 + 183735486 AT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733721 2 - 13748885 AT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762844 2 - 163208435 AT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800941 2 - 180051392 AT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905354 2 - 181584905 AT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128312 2 - 8785636 AT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596482 2 + 27333823 AT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866898 2 - 91010382 AT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977981 2 + 5179401 AT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683714 2 - 21726897 AT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112503167 1 + 204313951 A- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44949444 1 + 71252344 a- i saiBol1.JH378106 C 0 C 0 s canFam3.chr3 14286370 2 + 91889043 AT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1199888 2 - 11655695 AT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1266733 345 - 29863360 I e aotNan1.NW_018506370v1 1389191 822 - 15889662 I e cebCap1.NW_016107830v1 313764 162 - 1393929 I a score=843830.000000 s hg38.chr5_GL383530v1_alt 1813 72 + 101241 AGAAATGTTAAagtgtgaaagtagatcctagacccagactgtgtaggttcagatctcagctctgctacttat s panTro5.chr5 20230390 72 + 181907262 AGAAATGTTAAagtgtgaaagtagatcctagacccagactgtgtaggttcagatctcagctctgctacttat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247700 72 + 183735486 AGAAATGTTAAagtgtgaaagtagatcctagacccagactgtgtaggttcagatctcagctctgctacttat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733723 71 - 13748885 AGAAATGTTAAAGTGTGAAAGTAGAt-ctagacccagactgtgtaggttcagatctcagctctgctacttat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762846 72 - 163208435 AGCAatattaaagtgtgaaagtagatcctagacccagactgtgtaggttcagatctcagctctgctacttat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87800943 72 - 180051392 AGAAATGTTAAAGTATGAAAGTAgatcctagacccagactgtgtaggttcagatctcagctctgctacttat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905356 72 - 181584905 AGAAATGTTAAAGTATGAAAGTAgatcctagacccagactgtgtaggttcagatctcagctctgctacttat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128314 72 - 8785636 AGAAATGTTAAAGTATGAAAGTAgatcctagacccagactgtgtaggttcagatctcagctctgctacttat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596484 72 + 27333823 AGAAATGTTAAAGTATGAAAGTAgatcctagacccagactgcgtaggttcagatctcagctctgctacttat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866900 72 - 91010382 AGAAATGTTAAAGTAtaaaagtagatcctagacccagactgtgtaggttcagatctcagctctgctacttat i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1977983 72 + 5179401 AGAAATGTTAAAGTATGAAAGTAgatcctagacccagactgcgtaggttcagatctcagctctgccacttat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683716 72 - 21726897 AGAAATGTTAAAGTATGAAAGTAgatcctagacccagactgtgtaggttcagatctcagctctgctgcttat i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112503168 72 + 204313951 AGAAATGTTAAagtgtaaaaatagatcctagacccagactgttcaggttcagatctcagctctgctacttat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44949445 72 + 71252344 aGAAATGTTAAAGCATAAAAatagatcctagacccagactgtgcaggttcagatctcagctctcctacttat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 313926 72 - 1393929 aGAAATGTTAAagtgtaaaaatagaccctagacccagactgtgcaggttcagaactcagctctgctacttat i cebCap1.NW_016107830v1 I 162 C 0 s aotNan1.NW_018506370v1 1390013 72 - 15889662 aGAAATGTTGAagtgtaaaaatagatcctagacccagactgtgcaggttcagatctcagctctgctacttat i aotNan1.NW_018506370v1 I 822 C 0 s canFam3.chr3 14286372 66 + 91889043 AAAAATACAGAAGT------GCAGATCCTAGTCCCAGATTGTGTAGGTTCAGGTCCCAATTACAATATTTGT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1199890 65 - 11655695 AGAAATGTagaatc-------tagaccctagagctgtaattcataggttcaaatcctggctctgttacttat i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1266733 345 - 29863360 I a score=3284280.000000 s hg38.chr5_GL383530v1_alt 1885 300 + 101241 ttaagggcaaatacaaattaaaaattggaggcttaattcttcttcttaaaaataagggaaaagatttctaccc--cttcccttttcttagagcatttactttagaaaacttgtaattgcacattctttatctctttgaaatctatatacatctttttaaaaactaaataaggctctggtgagttctgtgacccaggaatgtctttctcaaggatcagagaacagagaaccatctttttgaaatgcaa---tcaag---gaagatagtgcccctatcttccagtttttgtgggagggtagcagcctaac s panTro5.chr5 20230462 300 + 181907262 ttaagggcaaatacaaattaaaaattggaggcttaattcttcttcttaaaaataagggaaaagatttctaccc--cttcccttttcttagagcatttactttagaaaacttgtaattgcacattctttatctctttgaaatctatatacatctttttaaaaactaaataaggctctggtgagttctgtgacccaggaatgtctttctgaaggatcagagaacagagaaccatctttttgaaatgcaa---tcaag---gaagatagtgcccctatcttccagtttttgtgggagggtagcagcctaac i panTro5.chr5 C 0 C 0 s panPan2.chr5 20247772 300 + 183735486 ttaagggtaaatacaaattaaaaattggaggcttaattcttcttcttaaaaataagggaaaagatttctaccc--cttcccttttcttagagcatttactttagaaaacttgtaattgcacattctttatctctttgaaatctatatacatctttttaaaaactaaataaggctctggtgagttctgtgacccaggaatgtctttctgaaggatcagagaacagagaaccatctttttgaaatgcaa---tcaag---gaagatagtgcccctatcttccagtttttgtgggagggtagcagcctaac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4733794 300 - 13748885 ttaagggcaaatacaaattaaaaattggaggcttgattcttcttcttaaaaataagggaaaagatttctaccc--cttcccttttcttagagcatttactttagaaaacttgtaattgcacattctttatctctttgaaatctgtatacatctttttaaaaactaaataaggctctggtgagttctgtgacccaggaatgtctttctcaaggatcagagaacagagaaccatctttttgaaatgcaa---tcaag---gaagatagtgcccctatcttccagtttttgtgggagggtagcagcctaac i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53762918 300 - 163208435 gtaagggcaaatacaaattaaaaattggaggcttaattattcttcttaaaaataagggaaaagatttctaccc--cttcccttttcttagagcatttactttagaaaacttgtaattgcacattctttatctctttgaaatctatatacatctttttaaaaactaaataaggctcttctgagttctatgacccaggaatgtctttctcaaggatcagagaacagagacccatctttttgaaatgcaa---tcaag---gaagacagtgcccctatcttccagtttttgtgggagggtagcagcctagc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87801015 300 - 180051392 gtaaggccaaatgcaaattaaaaattggaggcttaattcttcgtcttaaaaataagggaaaagatttctaccc--cttcccttttcttagagcatttactttagaaaacttgtaattgcacattctttatctctttgaaatctatatacatctttttaaaaactaaataaggctcttgtgagttctatgacccaggaatatgtttctcaaggatcagagaaccaagaaccatctttttgaaatgcaa---tcaag---gaagatagtgtccctatcttccagtttttgtgggagggtagcagcctaac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905428 300 - 181584905 gtaaggccaaatgcaaattaaaaattggaggcttaattcttcgtcttaaaaataagggaaaagatttctaccc--cttcccttttcttagagcatttactttagaaaacttgtaattgcacattctttatctctttgaaatctatatacatctttttaaaaactaaataaggctcttgtgagttctatgacccaggaatatgtttctcaaggatcagagaaccaagaaccatctttttgaaatgcaa---tcaag---gaagatagtgtccctatcttccagtttttgtgggagggtagcagcctaac i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128386 300 - 8785636 gtaaggccaaatgcaaattaaaaattggaggcttaattcttcgtcttaaaaataagggaaaagatttctaccc--cttcccttttcttagagcatttactttagaaaacttgtaattgcacattctttatctctttgaaatctgtatacatctttttaaaaactaaataaggctcttgtgagttctatgacccaggaatatgtttctcaaggatcagagaaccaagaaccatctttttgaaatgcaa---tcaag---gaagatagtgtccctatcttccagtttttgtgggagggtagcagcctaac i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596556 300 + 27333823 gtaagggcaaatgcaaattaaaaattggaggcttaattcttcgtcttaaaaataagggaaaagatttctaccc--cttcccttttcttagagcatttactttagaaaatttgtaattgcacattctttatctctttgaaatctatatacatctttttaaaaactaaataaggctcttgtgagttctatgacccaggaatatctttctcaaggatcagagaaccaagaaccatctttttgaaatgcaa---tcaag---gaagatagtgtccctatcttccagtttttgtgggagggtagcagcctaac i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1866972 300 - 91010382 gtaagggcaaatgcaaattaaaaattggaggcttaattcttcttcttaaaaataagggaaaagatttctaccc--cttcccttttcttagagaatttactttagaaaacttgtaattgcacattctttatctctttgaaatctatatacatctttttaaaaactaaataaggctcttgtgagttctatgacctaggaatgtctttctcaaggatcaaagaaccaagaaccatctttttgaaatgcca---tcaag---gaagatagtgtccctatcttccagtttttgtgggagggtagcagcctaac i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1978055 300 + 5179401 gtaagggcaaatgcaaattaaaaattggaggcttaattcttcgtcttaaaaataagggaaaagatttctaccc--cttcccttttcttagagcatttactttagaaaatttgtaattgcacattctttatctctttgaaatctatatgcatctttttaaaaactaaataaggctcttgtgagttctatgacccaggaatatctttctcaaggatcagagaaccaagaaccatctttctgaaatgcaa---tcaag---gaagatagtgtccctatcttccagtttttgtgggagggtagcagcctaac i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7683788 300 - 21726897 gtaagggcaaatgcaaattaaaaattggaggcttaattcttcatcttaaaaatgagggaaaagatttctgccc--cttcccttttcttagagcatttactttagaaaacttgtaattgcacattctttatctctttgaaatctatatacatctttttaaaaactaaataaggctcttgtgagttctatgacccaggaatgtctttctcaaggatcagagaatcaagaaccatctttttgaaatgcaa---tcaag---gaagatagtgtccctatcttccagtttttgtgggagggtagcagcctaac i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112503240 300 + 204313951 gtaagagcaaatacaaactaaaaattagaagtttaa---ttcttcttaaaaataagggaaaagatttctaccc--cttcccttttcttagcacatttactttagaaaacttgtaactgcacattctttatctctctgaaatctatatacatctttttaaaaactaaataaggcccttgtgagttctctgacccaggaatgcctttctcaaggatcagagaacagagaaccatctttttgaaatgcaa---tcaaggaagaagatagtactccggtctctcagtttttgtgggagggtagcagcctaac i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44949517 297 + 71252344 gtaagagcaaatacaaactaaaaattagaggtttaa---ttcttcttaaaaataagggaaaagatttctacct--cttcccttttcttagagcatttactttagaaaacttgtaattccacattctttatctctttgaaacttacatacatctttttaaaaactaaataaggcccttgtgagtcctgtgacccaggaatgcctttctcaaggatcagagaacagagaaccatctttttgaaatgcaa---tcaag---gatgatagtactcccatctctcagtttttgtgggagggtagcagcctaac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 313998 300 - 1393929 gtaagagcaaatacaaactaaaaattagaggtttaattcttcttcttaaaaataagggaaaagatttctaccc--cttcccttttcttagagcatttactttagaaaacttgtaattgcacattctttatctctttgaaatctatatacatcttttttaaaactaaataaggcccttgtgagttctgtgacccaggaatgcctttctcaaggatcagagaacagagaaccatctttttgaaatgcaa---tcaag---gaagatagtactcccatctctcagtttttgtgggagggtagcagcctaac i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1390085 302 - 15889662 gtaagagcaaatacaaactaaaaattagaggtttaattcttcttcttaaaaataagggaaaagatttctacccctcttcccttttcttagagcatttactttagaaaacttgtaattgtacattctttatctctttgaaatctatctacatctttttaaaaactaaataaggcccttgtgagttctgtaacccaggaatgcctttctcaaggaacagagaacagagaaccatctttttgaaatgcaa---tcaag---gaagatagcactcccatctctcagtttttgtgggagggtagcagcctaat i aotNan1.NW_018506370v1 C 0 I 6 s canFam3.chr3 14286438 288 + 91889043 AAaagggcaaatgcaaatgataaattagagtcttaa---ttatcctttaaagtaagagatgagacttcaagct--cctgccttttcttagagtatttagtttagaaaacttaaaattttaagttctctgtccgtttgaaatgtgtgcaaatcttttaaaatgccaggtaaaacttctc---gcttgaagacccaggtatatctttctcaaggacctgtgaacca---------tctttgaaatgtaaatttcagg---gaggatagcaccctcatctcccagtttctgtgggagaagaggagcctaac i canFam3.chr3 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e dasNov3.JH570378 1199955 0 - 11655695 C e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1266733 345 - 29863360 I a score=173001.000000 s hg38.chr5_GL383530v1_alt 2185 21 + 101241 ttcagtgggggattcttagtt s panTro5.chr5 20230762 21 + 181907262 ttcagtgggggattcttagtt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20248072 21 + 183735486 ttcagtgggggattcttagtt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4734094 21 - 13748885 ttcagtgggggattcttagtt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53763218 21 - 163208435 ttcagtgggggattcttagtt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87801315 21 - 180051392 ttcagtgggggattcttagtt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905728 21 - 181584905 ttcagtgggggattcttagtt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128686 21 - 8785636 ttcagtgggggattcttagtt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596856 21 + 27333823 ttcagtgggggattcttagtt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1867272 21 - 91010382 ttcagtgggggattcttagtt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1978355 21 + 5179401 ttcagtgggggattcttagtt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7684088 21 - 21726897 ttcagtgggggattcttagtt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112503540 18 + 204313951 ttcagtggg---ttcttattc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44949814 18 + 71252344 ttcagtggg---ttcttattc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 314298 18 - 1393929 ttcagtggg---ttcttattc i cebCap1.NW_016107830v1 C 0 C 0 s canFam3.chr3 14286726 18 + 91889043 tttggtagg---tgtctagtc i canFam3.chr3 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e dasNov3.JH570378 1199955 0 - 11655695 C e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1266733 345 - 29863360 I e aotNan1.NW_018506370v1 1390387 6 - 15889662 I a score=1556692.000000 s hg38.chr5_GL383530v1_alt 2206 160 + 101241 cctaaatt----accttctgtcatagagataggagaagttaa-tttttcctttgggtaaagccaattagtaacacacatggtcaccccaataccaggctaatttaggatgaactgtgcatgacaaatggtgct--gtcaagtcccct-----------------------------------------------------------tccttgaggactag-----------tcattg s panTro5.chr5 20230783 160 + 181907262 cctaaatt----accttctgtcatagagataggagaagttaa-tttttcctttgggtaaagccaattagtaacacagatggtcaccccaataccaggctaatttaggatgaactgtgcatgacaaatggtgct--gtcaagtcccct-----------------------------------------------------------tccttgaggagtag-----------tcattg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20248093 160 + 183735486 cctaaatt----accttctgtcatagagataggagaagttaa-tttttcctttgggtaaagccaattagtaacacagatggtcaccccaataccaggctaatttaggatgaactgtgcatgacaaatggtgct--gtcaagtcccct-----------------------------------------------------------tccttgaggagtag-----------tcattg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4734115 160 - 13748885 cctaaatt----accttctgtcatagagataggagaagttaa-tttttcctttgggtaaagccaattagtaacacagatggtcaccccaataccaggctaatttaggatgaactgtgcatgacaaatggtgct--gtcacgtcccct-----------------------------------------------------------tccttgaggactag-----------tcattg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53763239 160 - 163208435 cctaaatt----accttctgtcatagagataggagaaattaa-tttttcccttgggtaaagccagtttgtaacacagatggtcaccccaataccaggctaatttaggatgaactgtgcatgacaaatggtgct--gtcaagtcccct-----------------------------------------------------------tccttgaggactag-----------tcattg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87801336 160 - 180051392 cctaaatt----accttctgtcatagagataggagacgttaa-tttttcctttgggtaaagccaattagtaacacagatggtcaccccaataccaggctaatttaggatgaactgtgcatgaaaaatggtgct--gtcaagtcccct-----------------------------------------------------------tccttgaggactag-----------tcattg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905749 160 - 181584905 cctaaatt----accttctgtcatagagataggagacgttaa-tttttcctttgggtaaagccaattagtaacacagatggtcaccccaataccaggctaatttaggatgaactgtgcatgaaaaatggtgct--gtcaagtcccct-----------------------------------------------------------tccttgaggactag-----------tcattg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128707 160 - 8785636 cctaaatt----accttctgtcatagagataggagacgttaa-tttttcctttgggtaaagccaattagtaacacagatggtcaccccaataccaggctaatttaggatgaactgtgcatgaaaaatggtgct--gtcaagtcccct-----------------------------------------------------------tccttgaggactag-----------tcattg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1596877 160 + 27333823 cctaaatt----accttctgtcatagagataggagaagttaa-tttttcctttgggtaaagccaattagtaacacagatggtcaccccaatactaggctaatttaggatgaattgtgcatgaaaaatggtgct--gtcaagtcccct-----------------------------------------------------------tccttgaggactag-----------tcattg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1867293 160 - 91010382 cctaaatt----accttctgtcatagagataggagaagttaa-tttttcctttgggtaaagccaattagtaacacagatggtcaccccaataccaggctaatttaggatgaactgtgcatgaaaaatggtgct--gtcaagtcccct-----------------------------------------------------------tccttgaggactag-----------ccattg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1978376 160 + 5179401 cctaaatt----accttctgtcatagagataggagaagttaa-tttttcctttgggtaaagccaattagtaacacagatggtcaccccaatactaggctaatttaggatgaactgtgcatgaaaaatggtgct--gtcaagtcccct-----------------------------------------------------------tccttgaggactag-----------tcattg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7684109 160 - 21726897 cctaaatt----accttctgtcatagagataggagaagttaa-tttttcctttgggtaaagccaattagtaacacagatgatcaccccaataccacgctaatttaggatgaactgtgcatgaaaaacggtgct--gtcaagtcccct-----------------------------------------------------------tccttgaggactag-----------tcattg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112503558 137 + 204313951 ------------cccttctgtctgagagatatgagaagttaattttttcctttgggtgaagccaattag---------------ccccaatact-gactaatttaggaagaactgtgcatgacaaatggtgct--gtcaagtcccct-----------------------------------------------------------tccttgaggactag-----------tcactg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44949832 152 + 71252344 ------------cccttctgtcttagatatatga-cagttaattttttcctttgggtgaagccaattagtaacacagatggtcaccccaataccagactaatttaggaagaactatgcatgacaaatggtgct--gtcaagtccgct-----------------------------------------------------------tccttggggactag-----------tcacca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 314316 153 - 1393929 ------------cccttctgtcttaggcatatgagaagttaattttttcctttgggtgaagccaattagcaacacagatggtcaccccaataacatactaatttaggaagaactgtgcatgacaagtggtgct--gtcaagtcccct-----------------------------------------------------------tccttgaggactag-----------tcactg i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1390393 150 - 15889662 cctaacttattccccttctgtcttagagatatgagaagttatttttttcctttgggtgaagccaattag---------------ccccaataccagactaatttaggaagaactgtgcgtgacaaatggtgct--gtcaagtcccct-----------------------------------------------------------tccttgaggactag-----------tcactg i aotNan1.NW_018506370v1 I 6 C 0 s canFam3.chr3 14286744 225 + 91889043 ----atct----atcttctgtcataaagatgtgagaagtata-ttcttcctttggagaaagccaattag---cacagctgatacttgaattactaggtgagtttaggatgaatgtcaagtgacaaatggtggtgcgtcaaattctctaatcttggaatgcctgggtggctcagcggttgagcacttgccttccgcccagggcatgatcctggagttgcaggattgagtccctcattg i canFam3.chr3 C 0 I 126 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e dasNov3.JH570378 1199955 0 - 11655695 C e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1266733 345 - 29863360 I a score=2463159.000000 s hg38.chr5_GL383530v1_alt 2366 232 + 101241 tttatcttgagaacatgtatgt-atgggttgtatctgcttggctatataaatataaaaagggtacgatttctttctgtctttgtaatctcttagcagattgcctgtgatgt--------------------atgatattctgctttgatgcttattcaataataa-----aattgtat------tctttctcttctacctttgtggagaag-ttttctgggttgggaaaagattttgtttttaattatatgcactcaacacttac s panTro5.chr5 20230943 232 + 181907262 tttatcttgagaacatgtatgt-atgggttgtatctgcttggctatataaatataaaaagggtacgatttctttctgtctttgtaatctcttagcagattgcctgtgatgt--------------------atgatattctgctttgatgcttattcaataataa-----aattgtat------tctttctcttctacctttgtggagaag-ttttctggtttgggaaaagattttgtttttaattatatgcactcaacacttac i panTro5.chr5 C 0 C 0 s panPan2.chr5 20248253 232 + 183735486 tttatcttgagaacatgtatgt-atgggttgtatctgcttggctatataaatataaaaagggtacgatttctttctgtctttgtaatctcttagcagattgcctgtgatgt--------------------atgatattctgctttgatgcttattcaataataa-----aattgtat------tctttctcttctacctttgtggagaag-ttttctggtttgggaaaagattttgtttttaattatatgcactcaacacttac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4734275 245 - 13748885 tttatcttgagaacatgtatgt-atgggttgtatctgcttggctatataaatataaaaagggtacgatttctttctgtctttgtaatctcttagcagattgcctgtgatgtatgatattctgctttgatgcatgatattctgctttgatgcttattcaat-ataa-----aattgtat------------tcttctacctttgtggagaag-ttttctgggttgggaaaagattttgtttttaattatatgcactcaacacttac i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53763399 232 - 163208435 tttatcttgagaacatgtatgt-atgggttgtatctacttggctatataaatataaaaagggtacgatttctttctgtctttgtaatctcttagcagattgcctgtgatgt--------------------atgatattctgctttgatgcttattcaataataa-----aattgtat------tctttctcttctacctttgtggagaag-ttttctgggttgggaagagattttgtttttaattatatgcactcaacacttac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87801496 232 - 180051392 tttatcttaagaacatgtatgt-atgggttgtatctgcttggctatataaatataaaaagggtacgatttctttccgtctttgtaatctcttagctgattgcttgtgatgt--------------------atgatattcagctttgatgcttattcaataataa-----aattgtat------tctttctcttctaccgttgtggagaag-ttttctgggttgggaagagattttgtttttaattatatgcactcaacacttac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87905909 232 - 181584905 tttatcttaagaacatgtatgt-atgggttgtatctgcttggctatataaatataaaaagggtacgatttctttccgtctttgtaatctcttagctgattgcttgtgatgt--------------------atgatattcagctttgatgcttattcaataataa-----aattgtat------tctttctcttctaccattgtggagaag-ttttctgggttgggaagagattttgtttttaattatatgcactcaacacttac i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1128867 232 - 8785636 tttatcttaagaacatgtatgt-atgggttgtatctgcttggctatataaatataaaaagggtacgatttctttccgtctttgtaatctcttagctgattgcttgtgatgt--------------------atgatattcagctttgatgcttattcaataataa-----aattgtat------tctttctcttctaccgttgtggagaag-ttttctgggttgggaagagattttgtttttaattatatgcactcaacacttac i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1597037 232 + 27333823 tttatcttaagaacatgtatgt-atgggttgtatctgcttggctatgtagatataaaaagggtacgatttcttcccgtctttgtaatctcttagctgattgcttgtgatgt--------------------atgatattcagctttgatgcttattcaataataa-----aattgtat------tctttctcttctaccgttgtggagaag-ttttctgggttgggaagagattttgtttttaattataGGCACTCAAcacttac i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1867453 232 - 91010382 tttatcttaagaacatgtatgt-atgggttgtatctgcttggctatataaatataaaaagggtacgatttctttctgtctttgtaatctcttagctgattgcttgtgatgt--------------------atgatattctgctttgatgcttattcaataataa-----aattgtat------tctttctcttctacctttgtggagagg-ttttctgggttgggaagagattttgtttttaattatatgcattcaacacttac i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1978536 232 + 5179401 tttatcttaagaacatgtatgt-atgggttgtatctgcttggctatatagatataaaaagggtatgatttctttccgtctttgtaatctcttagctgattgctggtgatgt--------------------atgatattcagctttgatgcttatccaataataa-----aattgtat------tctttctcttctaccgttgtggagaag-ttttctgggttgggaagagattttgtttttaattatatgcactcaacacttac i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7684269 232 - 21726897 tttatcttaagaacatgtatgt-atgggttgtatctgcttggctatataaatataaaaagggtacgatttctttctgtctttgtaatctcttagctgattgcttgtgacgt--------------------atgacattcagctttgatgcttattcaataataa-----aattgtat------tctttctcttctacctttgtggagaag-ttttctgggttgggaagagatgttgtttttaattatatgcactcaacacttac i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112503695 243 + 204313951 tttatcttgagaacatgtatgt-atgggttgcatctgcttggctatataaatat-aaaagggtacaacttctttctgtctttgtactctcttagcagtttgtctgtgatat--------gttctgtgacgtatgatattatgctttgatgtttattcaagaataa-----aattgtat------tctttctcttctacgtttgtggagaag-ttttctaggttgggaagagattttgtttttaattatatgcacataacacttac i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44949984 243 + 71252344 tttatcttgagaacatgtatgt-atgggttgtatctgcttggctatataaatat-gaaaaggtacggtttctttctgtctttgtaatctcttagcagtttgcccgtgatgt--------gttctgtgatgtatgatattctgctttgatgcttattcaagaataa-----aagtgtat------tctttctcttctacctttgtggagaag-ttttctaggttgggaagagattttgtttttaattatatgaacccaacacttac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 314469 243 - 1393929 tttatcttgagaagatgcatgt-atgggttgtatctgcttggctatataaatat-aaaagggtacgatttctttctgtctttgtaatctcttagcagtttgcctgtgatgt--------gttctgtgatgtatgatattctgctttaatgcttattcaagaataa-----aattgtat------tctttctcttctaccattgtggagaag-ttttctaggttgggaagagattttatttttacttatatgcacccagcacttac i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1390543 243 - 15889662 tttaccttgagaacatgtatgt-atggtttctatctgcttggctatataaatat-aaaagggtacgatttctttctgtctttgtaatctcttagcagtttgtctgtgatgt--------gttctgtgatgtatgatattctgctttgatgtttattcaagaataa-----aattgtat------tctttgtcttctacctttgtggagaag-ttttctaggttgggaagagattttgtttttaattatatgcacccaacacttac i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14287095 240 + 91889043 tctagcctgaggaccagttcgtcatgggttgtatctgctttgctagat-------acaaaggtgggatttcttcctgtctttgcaatctcttagggaaattattgtggcac------------------acataacattctggtttgatgcttcttcagtaataatttagaataatattttttctctttcccttcatcctttgtggagaggtttttctatgttggcaggggattttgttttgaattgcatttccccagcacttac i canFam3.chr3 I 126 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e dasNov3.JH570378 1199955 0 - 11655695 C e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1266733 345 - 29863360 I a score=2216950.000000 s hg38.chr5_GL383530v1_alt 2598 198 + 101241 tagatatgtgatttggggtaagtttctgaatctctttgcacctcag-------------tttccttatctattaattgtggataa---tagtatctattattactgttgtttatagaattattgtgagg------attggatgactaaatatacataaactgcttagaacagagccaggtactataatagtaagcaccata----t--------attacttattattACTAT-------------------------------- s panTro5.chr5 20231175 198 + 181907262 tagatatgtgatttggggtaagtttctgaatctctttgcacctcag-------------tttccttatctattaattgtggataa---tagtatctattattactgttgtttatagaattattgtgagg------attggatgactaaatatacataaactgcttagaacagagccaggtactataatagtaagcaccata----t--------attacttattattACTAT-------------------------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20248485 198 + 183735486 tagatatgtgatttggggtaagtttctgaatctctttgcacctcag-------------tttccttatctattaattgtggataa---tagtatctattattactgttgtttatagaattattgtgagg------attggatgactaaatatacataaactgcttagaacagagccaggtactataatagtaagcaccata----t--------attacttattattACTAT-------------------------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4734520 198 - 13748885 tagatatgtgatttggggtaagtttttgaatctctttgcacctcag-------------tttccttatctattaattgtggataa---tagtatctattattactgttgtttatagaattattgtgagg------attggatgactaaatatacataaactgcttagaacagagccaggtactataatagtaagcaccata----t--------attacttattgttACTAT-------------------------------- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53763631 198 - 163208435 tagatatgtgatttggggtaggtttctgaatctctttgcgcctcag-------------tttccttatctattaattgtggataa---tagtatctattattactgttgtttatagaattattgtgagg------attggatgactaaatatatgtaaactgcttagaacagagccaggtactataatagtaagcaccata----t--------attacttattattACTAT-------------------------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87801728 197 - 180051392 tagatatgtgatttggggtaagtttctgaatctctttgcgtctcag-------------tttccttatctattaattgtggataa---tagtatctattattactgttgtttatagaattattgtgaag------attggatgaccaaatatatgtaaactgcttagaacagagccaagtactataatagtaagcacCATA----T--------ATTAC-TATTATTACTAT-------------------------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87906141 197 - 181584905 tagatatgtgatttggggtaagtttctgaatctctttgcgtctcag-------------tttccttatctattaattgtggataa---tagtatctattattactgttgtttatagaattattgtgaag------attggatgaccaaatatatgtaaactgcttagaacagagccaagtactataatagtaagcacCATA----T--------ATTAC-TATTATTACTAT-------------------------------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1129099 197 - 8785636 tagatatgtgatttggggtaagtttctgaatctctttgcgtctcag-------------tttccttatctattaattgtggataa---tactatctattattactgttgtttatagaattattgtgaag------attggatgaccaaatatatgtaaactgcttagaacagagccaagtactataatagtaagcacCATA----T--------ATTAC-TATTATTACTAT-------------------------------- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1597269 197 + 27333823 tagatatgtgatttggggtaagtttctgaatctctttgtgtctcag-------------tttccttatctattaattgtggataa---tagtatctgttattactgttgtttatagaattattgtgaag------attggatgaccaaatatatgtaaactgcttagaacagagccaagtactataatagtaagcactata----t--------attac-tattattACTAT-------------------------------- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1867685 197 - 91010382 tagatatgtgatttggggtaagtttctgaatctctttgcgtctcag-------------tttccttatctattaattgtggataa---tagtatctattactgctgttgtttatagaattattgtgaag------attggatgaccaaatatatgtaaactgcttagaacagagccaagtactataatagtaagcacCATA----T--------ATTAC-TATTATTACTAT-------------------------------- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1978768 197 + 5179401 tagatatgtgatttgaggtaagtttctgaatctctttgcatctcag-------------tttccttatctattaattgtggataa---tagtatctgttattactgttgtttatagaattattgtgaag------attggatgaccaaatatatgtaaactgcttagaacagagccaagtactataatagtaagcacCATA----T--------ATTAC-TATTATTACTAA-------------------------------- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7684501 197 - 21726897 tagataggtgatttggggtaagtttctgaatctctttgcatctcag-------------tttccttatctattaattgtggataa---tagtatctattattactgttgtttatagaattattgtgagg------attggatgaccaaatatatgtaaagtgcttagaacagagccaagtactgtaatagtaagcacCATA----T--------ATTAC-TATTATTACCAT-------------------------------- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112503938 193 + 204313951 tagaTACGTAATGAGgggtaagtttctgaatctctttgcatctcag-------------tttccttatttattaattgtggataa---tagtatctattattactgttgcttatagaattattgtgagg------at----tgaataaatatatgtaa-ctgcttagaacaaagccaggtactgtaatagtaagcaccata----t--------aatacctgttattactAT-------------------------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44950227 198 + 71252344 tagataggtaatgtggggtaagtttctgaatctctttgcacctcag-------------tttccttatcttttaattgtgcataa---tagtatctgttattactgttgcttatagaattattgtgagg------cttgaatgaataaatatatgtaagctgcttagaacaaagccaggtactgtaatagtaagcaccata----t--------attacctattattACTAT-------------------------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 314712 198 - 1393929 tagatatgtaatatggggtaagtttctgaatctctttgcacctcag-------------tttccttatctattaattgtggataa---tagtatatattattactgttgcttatagaattattgtgagg------attgaatgaataaatatatgtaaactgcttagaacaaagccaggtactgtaatagtaagcaccata----t--------attacctattattACTAT-------------------------------- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1390786 198 - 15889662 tagatatgtaatgtggggtaagtttctgaatctctttgcacctcag-------------tttccttatctattaattgtggataa---tagtatctattattactgttgcttatagaatccttgtgagg------attgtatgaataaatatatgtaaactgcttagaacaaagccaggtactgtaatagtaagcaccata----t--------attacctattattAGTCT-------------------------------- i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14287335 218 + 91889043 tagatatgtgatttgaagcaagtttctgaatctccatgtatcttatctatttcctatactttccttatctgttaattgtagataatagtagtatttgttactactgtttttattaggcatgttgtaaaattaaatataaaatgactaaatatatgtaaagtagttagaacagagccag------tagtagtaggtactgtatgagt--------attaattattgttATTAC-------------------------------- i canFam3.chr3 C 0 I 38 s dasNov3.JH570378 1199955 215 - 11655695 tagctctgtgatttgagacaaacttccaaatctcttggc--cttgg-------------tttcctaatctgttaattgtgcaaaagggtagtacctgttactactgctgttactaggattactgtgaag------atgaaatggcta------------------agaacagagccaggcac-----tagtaggtaccata----tgggtgctaactat-tattATTACTGTATGTAGAAATTAAAAATACTAATCTTTATTAT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 549824 250 - 10520994 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1266733 345 - 29863360 I a score=1229237.000000 s hg38.chr5_GL383530v1_alt 2796 109 + 101241 -AA-------------------------------------GAG-AAATTTTGCTTGTTTTAAATTC-------------TGGTTCCTTCTCAACTACAGTGTATTCCCAGGGATATTTCAAGAGCAAACATAAATAATATTAATATAGGGAATCCCCTAGC s panTro5.chr5 20231373 109 + 181907262 -AA-------------------------------------GAG-AAATTTTGCTTGTTTTAAATTC-------------TGGTTCCTTCTCAACTACAGTGTATTCCCAGGGATATTTCAAGAGCAAACATAAATAATATTAATATAGGGAATCCCCTAGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20248683 109 + 183735486 -AA-------------------------------------GAG-AAATTTTGCTTGTTTTAAATTC-------------TGGTTCCTTCTCAACTACGGTGTATTCCCAGGGATATTTCAAGAGCAAACATAAATAATATTAATATAGGGAATCCCCTAGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4734718 108 - 13748885 -AA-------------------------------------GAG-AAATTTTGCTTGTTTTAAATTC-------------TGGTTCCTT-TCAACTACAGTGTATTCCCAGGGATATTTCAAGAGCAAACATAAATAATATTACTATAGGGAATCCCCTAGC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53763829 110 - 163208435 -AA-------------------------------------GAGAAAATTTTGCTTGTTTTAAATTC-------------TGGTTCCTTCTCGACTACAGTGTATTCCTAGGGATATTTCAAGAGCAAACATAAATAATATTAATATAGGGAATCCACTAGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87801925 109 - 180051392 -AA-------------------------------------GAG-AAATTTTGCTTGCTTTAAATTC-------------TGGTTCCTTCTCAACTACAGTGTATTCCCAGGGATATTTCAAGAGCAAACATAAATAATATTAATAGAGGGAATCCACCAGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87906338 109 - 181584905 -AA-------------------------------------GAG-AAATTTTGCTTGCTTTAAATTC-------------TGGTTCCTTCTCAACTACAGTGTATTCCCAGGGATATTTCAAGAGCAAACATAAATAATATTAATAGAGGGAATCCACCAGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1129296 109 - 8785636 -AA-------------------------------------GAG-AAATTTTGCTTGCTTTAAATTC-------------TGGTTCCTTCTCAACTACAGTGTATTCCCAGGGATATTTCAAGAGCAAACATAAATAATATTAATAGAGGGAATCCACCAGC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1597466 109 + 27333823 -AA-------------------------------------GAG-AAATTTTGCTTGCTTTAAATTC-------------TGGTTCCTTCTCAACTACAGTGTATTCCCAGGGATATTTCAAGAGCAAACATAAATAATATTAATATAGGGAATCCACCAGC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1867882 109 - 91010382 -AA-------------------------------------GAG-AAATTTTGCTTGCTTTAAATTC-------------TCGTTCCTTCTCAACTACAGTGTATTCCCAGGGATATTTTAAGAGCAAACATAAATAATATTAATATAGGGAATCCACCAGC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1978965 109 + 5179401 -AA-------------------------------------AAT-AAATTTTGCTTGCTTTAAATTC-------------TGGTTCCTTCTCAACTACAGTATATTCCCAGGGATATTTCAAGAGCAAACATAAATAATATTAATATAGGGAATCCACCAGC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7684698 109 - 21726897 -AA-------------------------------------GAG-AAATTTTGCTTGTTTTAAATTC-------------TGGTTCCTTCTCAACTACAGTGTATTCCAAGGGATATTTCAAGAGCAAACATAAATAATATTAATATAGGGAATCCACCAGC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112504131 146 + 204313951 -AAGTAGAACTCTAAAATGTTTACTACTGTTGTTATGAAAGAT-AAATTTTACGTGTTTTAAATTC-------------TGGTTCCTTCTCAACTACAGTGTATTCCCAGGGGCATTTCAAGAGCAAACATAATGAATGTTAATAAAGGGAATCCACCAGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44950425 146 + 71252344 -AAGTAGAACTCTAAAATGTTTACTACTGTTGTTATAAAGGAT-AAATTTTATGTGTTTCAAATTC-------------TGGTTCCTTCTCAACTACAGTGTATTCCCAGGAGTATTTCAAGAGCAAACATAAGGAATTTTGATAAAGGGAATCCACCAGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 314910 146 - 1393929 -AAGTAGAGCTCTAAGATGTTTACTACTGTTGTTATAAAGGAT-AAATTTTACATGTTTTAAATTC-------------TGGTTCCTTCTCAACTACAGTGTATTCCCAGGGGTATTTCAAGAGCAAACATAAAGAATATTAATAAAGGGAATCCACCAGC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1390984 159 - 15889662 -AAGTAGAATTCTAAAATGTTTACTACTGTTGTTATAAAGGAT-AAATTTTACATGTTTTAAATTCTATAAATTTAGAATGGTTCCTTCTCAACTACAGTGTATTCCCAGGGGTATTTCAAGAGCAAATATAAAGAATATTAATAAAGGGAATCCACCAGC i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 550074 109 - 10520994 -AA-------------------------------------GAG-AAATTTTAGTTGTTTTAAATTC-------------TGATTCTCTCTCAATTATAGTGTACTACCAGACATATTTCAAGAGCAAATGTAAATGCCATTAAAATAGGGAATCCACCAGC i proCoq1.NW_012147189v1 I 250 C 0 s canFam3.chr3 14287591 100 + 91889043 -AA-------------------------------------AAG-AAGTTTTGGCTTTACTAAATTG-------------TGGTTCCTATTCAA-TACAGTGTATTTCCAGAAGAATTTC-------AATGAAAAGACCATTAAACTAAGAAATTCAC-AGT i canFam3.chr3 I 38 C 0 s dasNov3.JH570378 1200170 92 - 11655695 AAA-------------------------------------AGG-AAATCGTGGTTGTTTTAAATTC-------------TGGTTCTTTCTTAAATATAGCATACTCCCAGAGGTATTTCAAGAGCACAGGAAAAGGCCATTTT------------------ i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1266733 345 - 29863360 I a score=2662468.000000 s hg38.chr5_GL383530v1_alt 2905 220 + 101241 AAGATAAGAAATCTCAACTTAA----------ACTCCACCATCCACATG-TATTTATGGAGT----TACTTTCCCTAAATTTGAGAAACGTGTTTAA-AAAAATTACTCTTCTAGTGAGTAAt-tctttcttaatttctttca-------------ttctttcATAATGactcatgaaatccaaatctgtaccatg--ctatg-agtacctgcatgatctggcctctgcctccttcttcaacctgaacctctt s panTro5.chr5 20231482 220 + 181907262 AAGATAAGAAATCTCAACTTAA----------ACTCCACCATCCACATG-TATTTATGGAGT----TACTTTCCCTAAATTTGAGAAACGTGTTTTA-AAAAATTACTCTTCTAGTGAGTAAt-tctttcttaatttctttca-------------gtctttcataatgactcatgaaatccaaatctgtaccatg--ctatg-agtacctgcatgatctggcctctgcctccttcttcaacctgaacctctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20248792 220 + 183735486 AAGATAAGAAATCTCAACTTAA----------ACTCCACCATCCACATG-TATTTATGGAGT----TACTTTCCCTAAATTTGAGAAACGTGTTTAA-AAAAATTACTCTTCTAGTGAGTAAt-tctttcttaatttctttca-------------ttctttcATAATGactcatgaaatccaaatctgtaccatg--ctatg-agtacctgcatgatctggcctctgcctccttcttcaacctgaacctctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4734826 224 - 13748885 AAGATAAGAAATCTCAACTTAA----------ACTCCACCATCCACATG-TATTTATGGAGTTAAATACTTTCCCTAAATTTGAGAAACGTGTTTTA-AAAAATTACTCTTCTAGTGAGTAAt-tctttcttaatttctttca-------------ttctttcATAATGactcatgaaatccaaatctgtaccatg--ctatg-agtacctgcatgatctggcctctgcctccttcttcaacctgaacctctt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53763939 219 - 163208435 AAGATAAGAAATCTCAACTTAA----------ATTCCACCATCCACACG-TATTTATGGAGTTAAATACTTTCCCTAAATTTGAGAAACGTGTTT-A-AAAAATTACTCTTCTAGTG----AT-Cctttcttaatttctttca-------------ttctttcATAATGactcatgaaatccaaatctgtaccatg--ctatg-agtacctgcatgatctggcctctgcctacttcttcaaactgaacctctt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87802034 224 - 180051392 AAGATAAGAAATCTCAACTTAA----------ACTCCACCATCCACATG-TATTTATGGAGTTAAATACTTTCCCTAAATTTAAGAAACGTGTTTTT-AAAAAttactcttctagtgaataat-tctttcttaatttctttta-------------ttctttcataataactcatgagatctaaatccgtaccatg--ctagg-agtacctgcaggatctggcctctgcctacttcttcagcctgaacctctt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87906447 224 - 181584905 AAGATAAGAAATCTCAACTTAA----------ACTCCACCATCCACATG-TATTTATGGAGTTAAATACTTTCCCTAAATTTGAGAAACGTGTTTTT-AAAAAttactcttctagtgaataat-tctttcttaatttctttta-------------ttctttcataataactcatgagatccaaatccgtaccatg--ctagg-agtacctgcatgatctggcctctgcctacttcttcagcctgaacctctt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1129405 224 - 8785636 AAGATAAGAAATCTCAACTTAA----------ATTCCACCATCCACATG-TATTTATGGAGTTAAATACTTTCCCTAAATTTGAGAAACGTGTTTTT-AAAAATTACTCTTCTAGTGAATAAT-TATTTCTTAATTTCTTTTA-------------TTCTTTCATAATAactcatgagatccaaatccataccatg--ctagg-agtacctgcatgatctggcctctgcctacttcttcagcctgaacctctt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1597575 224 + 27333823 AAGATAAGAAATCTCAACTTAA----------ACTCCACCATCCACATG-TATTTATGGAGTTAAATACTTTCCCTAAATTTGAGAAACGTGTTTTT-AAAAATTACTCTTCTAGTGAATAAt-tctttcttaatttctttta-------------ttctttcATAATAactcatgagatccaaatccgtaccatg--ctggg-agtacctgcatgatctggcctctgcctacttcttcagcctgaatctctt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1867991 224 - 91010382 AAGATAAGAAATCTCAACTTAA----------ACTCCACCATCCACATG-TATTTATGGAGTTAAATACTTTCCCTAAATTTGAGAAACGTGTTTTA-AAAAAttactcttctagtgaataat-tctttcttaatttctttta-------------ttctttcataataactcatgaggtccaaatgcgtaccatg--ctagg-agtacctgcatgatctggcctctgcctacttcttcaacctgaacctctt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1979074 224 + 5179401 AAGATAAGAAATCTCAACTTAA----------ATTCCACCATCCACATG-TATTTATGGAGTTAAATACTTTCCCTAAATTTGAGAAACGTGTTTTT-AAAAATTACTCTTCTAGTGAATAAt-tctttcttaatttctttta-------------ttctttcATAATAactcatgagatccaaatccgtaccatg--ctagg-agtacctgcatgatttggcctctgcctacttcttcagcctgaatctctt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7684807 224 - 21726897 AAGATAAGAAATCTCAACTTAA----------ACTCCACCATCCACATG-TATTTATGGAGTTAAATACTTTCCCTAAATTTGAGAAATGTGTTTTA-AAAAATTGCTCTTCTAGTGAGTAAt-tctttcttaatttctttca-------------ttctttcATAATAACTCACGAGATccaaatccgtaccatg--ctgtg-agtacctgcatgatctggcctctgcctacttcttcaacctgaacctctt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112504277 220 + 204313951 AAGAAAAGAAATCTCATCTTAA----------ATTCCACCATCCACATG-TATTTATGGAGTTAAATACTTTCCCTAAATTTGAGAAATGTGTTTTT-AAAAATTACTCTTCTACTGAGTCA-----TTCTTAATTTCTTTCA-------------TTTTTTCATCCTGACTCCCaaaatccaaatctgtactatg--ctatg-agtacctacatgatctggcctctgcctacttcttcaacctgagcttctt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44950571 221 + 71252344 AAGATAAGAAATCTCATCTTAA----------ATTCCACCATCCACATG-TATTTATGGAGTTAAATACTTTCCCTGAATTTGAGAAATATGTTTTTAAAAAATTACTCTTCTACTGAGTAA-----TTCTTAATTTCTCTCA-------------TTttttcatcatgactcctgaaatccaaatctgtactatg--ctatg-agtacctatatgatctggcctctgcctgcttcttcaacctgagcctttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 315056 216 - 1393929 AAGATAAGAAATCTCATCTTAA----------ATTCCACCATCCACATG-TATTTATGGAGTTAAATACTTTCCCTAAATTTGAGAAGTGTGTTTTA-AAAAATTACCATTCTACTGAGTAA-----TTCCTAATTTCTTTCA-------------TTttttcatcatgactcctgaaatccaaatctgtactatg--ctatg-agtac----atgatatggcctcggcctacttcttcaacctgagcctctt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1391143 221 - 15889662 AAGATAAGAAATCTCATCTTAA----------ATTCCACTATCCACATG-TATTTATGGAGTTAAATACTTTCCCTAAATTTGAGAAATGTGTTTTA-AAAAATTACTCTTCTACTGAGTAA-----TTCTTAATTTCTTTCAT------------TTttttcatcatgactcctgaaatccaaatctgtactatg--ctatg-agtacctacatgatctggcctctgcctacgtcttcaacctgagcctctt i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 550183 236 - 10520994 AAGATACAAAATCTCTGCTCAA----------ATGTAACCATCCACATGAAAATTATGGAGTTAAATGTTTTCCCTATATTTGAGAAATGTGGG--A-AAAAA-TACTCTTCTAGTGAGTAATGTCTTTCTTAATTTCTTTCAAAATTTCTGTCA-TTCTTTTATAATGTCTTAtgaaatccaaatctgtaccata--gtatatgaggcctataggatctggcctttgcctacttcttcaacctggacttcct i proCoq1.NW_012147189v1 C 0 I 24 s otoGar3.GL873536 1267078 248 - 29863360 AAGATTCAGAATCTTAGCTCAAATCTTAGCTCATGAAACCATCTACATGAAATTTATGTAATTAAATGTTTTCCCTATATATGAGAAATGTGGG--G-GGAAATTACCCTTCTAGTGAGTAATGTCTATCTTAATTTCTTTCAAAAATTCTCTCATTTTTTTTATAATGTCTCAtgaaatccaaatctgtaccgta--gcatataagacctgcagcatctggcctctgcaaccttcttcaacctgaacttcct i otoGar3.GL873536 I 345 C 0 s canFam3.chr3 14287691 177 + 91889043 AAGACTTAAAGTCTCATCCCAA----------ATTTCACCACCCACATGGAAATTGTGGAGTTAAATACTGTTCGTGAATTTGAAAAATCTGT---A-AAATATTACTCTTCTAGTG-------------------------------------------------ATAAGTCATGGACTcaaaatctttaccaca--------aaggcttgc-----ttgacctttgtccacttcttcaacctgagcctcct i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1200262 191 - 11655695 AAAATACATGATCTTGACCTAA----------ACTCCACCATCCCCATAAAAATGATGGAGTTAAATACTCTCCCTAAATTTGAGAAATGTGG---A-AAACATTACTCTTCCATTAATAAAA-------------------------------------------ATAGCTGCTGAAATGTaacttcttacagtgatctatg-ag-gcctgcatgacctggtccctgc---cttcttcatttcgaccctcct i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e mm10.chr13 76427229 373 + 120421639 I a score=112562.000000 s hg38.chr5_GL383530v1_alt 3125 10 + 101241 gactattctc s panTro5.chr5 20231702 10 + 181907262 gactattctc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20249012 10 + 183735486 gactattctc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4735050 10 - 13748885 gactattctc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53764158 9 - 163208435 -accattctc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87802258 9 - 180051392 -accattctc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87906671 9 - 181584905 -accattctc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1129629 9 - 8785636 -accattctc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1597799 9 + 27333823 -accattctc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1868215 9 - 91010382 -accattctc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1979298 9 + 5179401 -accattctc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7685031 9 - 21726897 -accattctc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112504497 9 + 204313951 -accattctc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44950792 9 + 71252344 -accattctc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 315272 9 - 1393929 -accattctc i cebCap1.NW_016107830v1 C 0 I 18 s aotNan1.NW_018506370v1 1391364 9 - 15889662 -accattctc i aotNan1.NW_018506370v1 C 0 I 18 s otoGar3.GL873536 1267326 9 - 29863360 -gccattctc i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14287868 9 + 91889043 -accattctt i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1200453 6 - 11655695 -atcagt--- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 550419 24 - 10520994 I e mm10.chr13 76427229 373 + 120421639 I a score=135668.000000 s hg38.chr5_GL383530v1_alt 3135 23 + 101241 gtccctcccaccttctatgagaa s panTro5.chr5 20231712 23 + 181907262 gtccctcccaccttctatgagaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20249022 23 + 183735486 gtccctcccaccttctatgagaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4735060 23 - 13748885 gtccctcccaccttctatgagaa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53764167 23 - 163208435 ctccctcccaccttctatgagaa i nomLeu3.chr2 C 0 I 1 s rheMac8.chr6 87802267 23 - 180051392 ctctctcccactttctgtgagaa i rheMac8.chr6 C 0 I 1 s macFas5.chr6 87906680 23 - 181584905 ctctctcccactttctgtgagaa i macFas5.chr6 C 0 I 1 s macNem1.NW_012011400v1 1129638 23 - 8785636 ctctctcccactttctgtgagaa i macNem1.NW_012011400v1 C 0 I 1 s cerAty1.NW_012002401v1 1597808 23 + 27333823 ctctctcccactttctgtgagaa i cerAty1.NW_012002401v1 C 0 I 1 s chlSab2.chr4 1868224 23 - 91010382 ctgtctcccatcttttgtgagaa i chlSab2.chr4 C 0 I 1 s manLeu1.NW_012103732v1 1979307 23 + 5179401 ctctctcccactttctgtgagaa i manLeu1.NW_012103732v1 C 0 I 1 s colAng1.NW_012115488v1 7685040 23 - 21726897 ctctctcccaccttctgtgagaa i colAng1.NW_012115488v1 C 0 I 1 s calJac3.chr2 112504506 17 + 204313951 ------ctccctgaatatgagaa i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 44950801 17 + 71252344 ------ctcactgaatatgagaa i saiBol1.JH378106 C 0 I 1 s otoGar3.GL873536 1267335 17 - 29863360 ------ctccttgcccactagag i otoGar3.GL873536 C 0 I 1 s canFam3.chr3 14287877 17 + 91889043 ------tcccttggtaactagaa i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1200459 19 - 11655695 ----ctccccttgtttaccagaa i dasNov3.JH570378 C 0 I 1 e micMur3.chr12 84804925 1622 + 108143057 I e proCoq1.NW_012147189v1 550419 24 - 10520994 I e mm10.chr13 76427229 373 + 120421639 I e aotNan1.NW_018506370v1 1391373 18 - 15889662 I e cebCap1.NW_016107830v1 315281 18 - 1393929 I a score=2394198.000000 s hg38.chr5_GL383530v1_alt 3158 191 + 101241 gtaggcatactgacat--------------tctttaggttc-----------ctctaatggtcaagcttgttctcacttcagggtctttgcgcttgctttcccttctgcttgcaaagtgcttatttcagatatttg-attgctggcccctttctattg-ccaggtgggagat-aaagtaacccc-ttctcatagaagc--ttctcctaaacctcaccagccg s panTro5.chr5 20231735 192 + 181907262 gtaggcatactgacat--------------tctttaggttc-----------ctctaatggtcaagcttgttctcacttcagggtctttgcgcttgctttccgttctgcttgcaaagtgcttatttcagatatttg-attgctggcccctttctattg-ccagatgggagat-aaagtaacccctttctcatagaagc--ttctcctaaacctcaccagccg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20249045 191 + 183735486 gtaggcatactgacat--------------tctttaggttc-----------ctctaatggtcaagcttgttctcacttcagggtctttgcgcttgctttcccttctgcttgcaaagtgcttatttcagatatttg-attgctggcccctttctattg-ccagatgggagat-aaagtaacccc-ttctcatagaagc--ttctcctaaacctcaccagccg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4735083 191 - 13748885 gtaggcgtactgacat--------------tctttaggttc-----------ctctaatggtcaagcttgttctcacttcggggtctttgcgcttgctttcccttctgcttgcaaagtgcttatttcagatatttg-attgttggcccctttctattg-ccagatgggagat-aaagtaacccc-ttctcatagaagc--ttctcctaaacctcaccagccg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53764191 191 - 163208435 gtaggcatactgacat--------------tctttaggttc-----------ctctaatggtcaagcttgttctaacctcggggtctttgcacttgcttttgattctgcctgcaaagtgcttatttcagatatttg-attgttggcccctttctgttg-ccaggtgggagat-aaagtaacccc-ttctcatagaagc--ttctcctaaACCTCACCAGCCA i nomLeu3.chr2 I 1 I 6137 s rheMac8.chr6 87802291 191 - 180051392 gtgggcatactgacat--------------tctttaggttc-----------ctctaatggtcaagctt-ttctcacctcagggtctttgcacttgctttcccttctgcttgcaaagtgcttctttcagatatttgcattgctggcccctttctgttg-ccaggtgggagat-aaagtaaaccc-ttctcatagaagc--ttctcctaaacctcaccagcca i rheMac8.chr6 I 1 C 0 s macFas5.chr6 87906704 192 - 181584905 gtgggcatactgacat--------------tctttaggttc-----------ctctaatggtcaagcttgttctcacctcagggtctttgcacttgctttcccttctgcttgcaaagtgcttctttcagatatttgcattgctggcccctttctgttg-ccaggtgggagat-aaagtaaaccc-ttctcatagaagc--ttctcctaaacctcaccagcca i macFas5.chr6 I 1 C 0 s macNem1.NW_012011400v1 1129662 192 - 8785636 gtgggcatactgacat--------------tctttaggttc-----------ctctaatggtcaagcttgttctcacctcagggtctttgcacttgctttcccttctgcttgcaaagtgcttctttcagatatttgcattgctgacccctttctgttg-ccaggtgggagat-aaagtaaaccc-ttctcatagaagc--ttctcctaaacctcaccagcta i macNem1.NW_012011400v1 I 1 C 0 s cerAty1.NW_012002401v1 1597832 192 + 27333823 gtgggcatactgacat--------------tctttaggttc-----------ctctaatggtcaagcttgttctcacctcgaggtctttgcacttgctttcccttctgcttgcaaagtgcttctttcagatatttgcattgctggcccctttctgttg-ccaggtgggagat-aaagtaaaccc-ttctcatagaagc--ttctcctaaacctcaccagcca i cerAty1.NW_012002401v1 I 1 C 0 s chlSab2.chr4 1868248 193 - 91010382 gtgggcatactgacat--------------tctttatgttc-----------ctctaatggtcaaacttgttctcacctcggggtctttgcacttgctttcccttctgcttgtaaagtgcttctttcagatatttgcattgctggcccctttctgttg-ccaggtgggagataaaagtaaaccc-ttctcatagaagc--ttctcctgaacctcaccagcca i chlSab2.chr4 I 1 C 0 s manLeu1.NW_012103732v1 1979331 192 + 5179401 gtgggcatactgacat--------------tctttaggttc-----------ctctaatggtcaagcttgttctcacctcggggtctttgcacttgctttcccttctgcttgcaaagtgcttctttcagatatttgcattgctggcccctttctgttg-ccaggtgggagat-aaagtaaaccc-ttctcatagaagc--ttctcctaaacctcaccagcca i manLeu1.NW_012103732v1 I 1 C 0 s colAng1.NW_012115488v1 7685064 192 - 21726897 gtgggcatactgacat--------------tctttaggttc-----------ctctaatggtcaagcttgttctcatctcggggtctttgcacttgctttcccttctgcttgcaaagtgcttctttcagatatttgcattgctggcccctttctgttg-ccaggtgggagat-aaagtaaaccc-ttctcatagaagc--ttcttctaaacctcaccagcca i colAng1.NW_012115488v1 I 1 C 0 s calJac3.chr2 112504524 191 + 204313951 gtggtcatactgagat--------------tctttaggttc-----------ctttaatggtcaaacttgttctcatctcagggtctttgcactggctttcccttctg-ttgcaaaatgcttctttcagatatttgcactgctggttcctttctgtca-ccaggtgggagat-aaagtaacccc-ttctcatagaaac--ttctcctaaaccttaccagcca i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 44950819 191 + 71252344 gtggtcatactgacat--------------gctttaggttc-----------ctttaatggtcaaacttcttctcatctcagggtctttgcacttgctttcccttctg-ttgtaaaatgctgctttcagctatttgcactgctggctgctttctgtca-ccaggtgggagat-aaagtaacccc-ttctcatagaaac--ttctcctaaaccttaccagcca i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107830v1 315299 188 - 1393929 gtggtcatactgacat--------------tctttaggttc-----------ctttaatggtcaaacgtgttctcatctcagggtctttgcacttgctttcccttctg-ttgcaaaatgcttctttcagctgtttacactgctggctcctttctgtca-ccaggtgggagat-aaagtaacccc-ttctcgtagaaac--tt---ctaaactttaccagcca i cebCap1.NW_016107830v1 I 18 C 0 s aotNan1.NW_018506370v1 1391391 191 - 15889662 gtggtcatactgacgt--------------tctttaggttc-----------ctttaatggtcaaacttgttctcatctcggggtctttgcacttgctttcccttctg-ttgcaaaatgcttctttcagctatttgcactgctggctcctttctgtca-ccaggtgggagat-aaagtaaaccc-ttctcatagaaac--ttctcctaaaccttaccagcca i aotNan1.NW_018506370v1 I 18 C 0 s proCoq1.NW_012147189v1 550443 192 - 10520994 gtagttatactgaaat--------------tctttaggttc-----------ctttaatagccaagcttgctctcacttcagggactttgcacttgcttttccctctgcttggaatgtcctcccttcagatttttgcattgttagctcctttccatcattcaggtggcagat-aaagtaacccc-t-ctcttagaagc--ttctcttaaagttcaccagtca i proCoq1.NW_012147189v1 I 24 C 0 s otoGar3.GL873536 1267353 194 - 29863360 gtgcttatgctgatat--------------gctttccttct-----------ccctgacagccaagcttgttctcgtcccagggccttggcacttgctttcccctctgcttggaaagtact-cctgcagatttttgctttatggattccttctcataattcagctggcaggt-gaagaaactcc-tcctcatagaagcttttctcttacacttcaccagtga i otoGar3.GL873536 I 1 C 0 s canFam3.chr3 14287895 132 + 91889043 gtaatcatactgacat--------------tctttagtttc-----------ctctaacagccaaatctgttctcacctcagggtctttgcacttgctctttcctgtttttggaaagctcttctttcacatttttgcattgctggctccttctcatt----------------------------------------------------------------- i canFam3.chr3 I 1 C 0 s dasNov3.JH570378 1200479 216 - 11655695 gtggtcaaactggcatcattatcatcatcatcatcatagtcatcatcatggtctctaacagtcaaaattgttctcaccttagggtcattgcacttgttgtcctttctgcttggaaagctcttctttcag--ttttgcaagcctggctccttctcttcattcaggtcacagat-aaaatagtccc-tccttagagaggc--ttctcataaacctcaccagttg i dasNov3.JH570378 I 1 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e mm10.chr13 76427229 373 + 120421639 I a score=1971685.000000 s hg38.chr5_GL383530v1_alt 3349 151 + 101241 cccatgc-tctttcttgc--ttctgc--tgttttatagcacttgtctctgtccgaaattctcgtctgtgtttgctaaatctgtgttta------ccaa-aagt-----------aagtttcatgagagcatgggctttctttgctaaatctctgcttcctagttcagtgcctgg s panTro5.chr5 20231927 152 + 181907262 cccatgcttttttcttgc--ctctgc--tgttttatagcacttgtctctgtccgaagttctcgtctgtgtttgctaaatctgtgttta------ccaa-aagt-----------aagtttcatgagagcatgggctttctttgctaaatctctgcttcctagttcagtgcctgg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20249236 151 + 183735486 cccatgc-tctttcttgc--ctctgc--tgttttatagcacttgtctctgtccgaagttctcgtctgtgtttgctaaatctgtgttta------ccaa-aagt-----------aagtttcatgagagcatgggctttctttgctaaatctctgcttcctagttcagtgcctgg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4735274 151 - 13748885 cccatgc-tctttcttgc--ctctgc--tgttttatagcacttgtctctgtccgaagttcttgtctgtgtttgctaaatctgtgttta------ccaa-aagt-----------aagtttcatgagagcatgggctttctttgctaaatctctgcttcctagttcagtgcctgg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53770519 151 - 163208435 CCCATGT-TCTTTCTTGC--CTCTCC--TGTtttatagcacttgtcactgtctgaagttctcgtctgtgtttgctaaatctgtgttta------ccaa-aagt-----------aagtttcatgagagcatgggctttctttgctaaatctctgcttcctagttcagtgcctgg i nomLeu3.chr2 I 6137 C 0 s rheMac8.chr6 87802482 151 - 180051392 cccatgc-tctttcttgc--ctcggc--tgttttatagcacttgtcactgtctgaagtccttgtctgtgtttgctaaatctgtgttta------ccaa-aagt-----------aagtttcatgaaagcctgggctttcttagctaaatctctgcttcctagttcagtgcctgg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87906896 151 - 181584905 cccatgc-tctttcttgc--ctcggc--tgttttatagcacttgtcactgtctgaagtccttgtctgtgtttgctaaatctgtgttta------ccaa-aagt-----------aagtttcatgagagcctgggctttctttgctaaatctctgcttcctagttcagtgcctgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1129854 151 - 8785636 cccatgc-tctttcttgc--ctctgc--tgttttatagcacttgtcactgtctgaagtccttgtctgtgtttgctaaatctgtgttta------ccaa-aagt-----------aagtttcatgagagcctgggctttctttgctaaatctctgcttcctagttcggtgcctgg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1598024 151 + 27333823 cccatgc-tctttcttgc--ctctgc--tgttttatagcacttgtcactgtctgaagtccttgtctgtgtttgctaaatctgtgttta------ccaa-aagt-----------aagtttcatgagagcctgggctttctttgctaaatctctgcttcctagttcggtgcctgg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1868441 150 - 91010382 cccatgg-tctttcttgc--ctctgc--tgttttatagcacttgtcactgtctgaagtccttgtctgtgtttgctaaatctgtgttta------ccaa-aagt-----------aagtttcatgagag-ctgggctttctttgctaaatctctgcttcctagttcggtgcctgg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1979523 151 + 5179401 cccatgc-tctttcttgc--ctctgc--tgttttatagcacttgtcactgtctgaagtccttgtctgtgtttgctaaatctgtgttta------ccaa-aagt-----------aagtttcatgagagcctgggctttctttgctaaatctctgcttcctagttcggtgcctgg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7685256 162 - 21726897 cccatgc-tctttcttgc--ctctgc--tgttttatagcacttgtcactgtctgaagtccttgtctgtgtttgctaaatctatgttta------ccaa-atctgtgtttaccaaaagtttcatgagagcctgggctttctttgctaaatctctgcttcctagttcggtgcctgg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112504715 151 + 204313951 cccatgc-tctttctcac--ctctgc--tgttttatagcacttgtcactatccaaggttctcatctgtgtttgctgaatccgtgttta------ctga-aagt-----------aagtttcatgagagcatgggccttctttgctaaatctctgcttcctagttcagcgtctgg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44951010 157 + 71252344 cccatgc-tctttctcgc--ctctgc--tgttttatagcacttgtcactatctgaggctctcatctgtgtttgctgaatctgtgtttgctgaatctga-aagt-----------aagtttcacgagagcatgggccttcttagctaaatctctgcttcctagttcagcgcctgg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 315487 151 - 1393929 cccatgc-tccttctcgc--ctctgc--tgttttatagcacttgtcactatctgaggttctcatctgtgtttgctgaatctgtgttta------ctga-aagt-----------aaatttcatgagagcgtgggccttctttgctaaatctctgcttcctagttcagcgcctgg i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1391582 151 - 15889662 cccatgc-tctttctcgc--ctctgc--tgttttatagcacttgtcactatctgaggttctcatctgtgtttgctgaatctgtgttta------ctga-aagt-----------aagtttcatgagagcgtgggccttctttgctaaatctctgcttcctagttcagcgcctgg i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 550635 153 - 10520994 cctgtac-tctctcgctt--tcctgctatgttttatagcacttgtcactatctgaaattcttgtctgtgtttgcaatatctgtgttta------ccaa-aagt-----------taacttcatgagaatatggaccttctttactaaacctctgcttcctagtttagtgtctgg i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1267547 152 - 29863360 gctgtgc-tgtcttgctt--tcctgctgtattttataacacttgttactatctgcaattcttgactgtatttgtaatatctgtgttta------ccaa-acat-----------taacttcatgagaggatgggccttctttaccaaatcccttcttcatag-ttaatgtctgg i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14288027 140 + 91889043 ---attt-tctcacttga--ccctgttttgttttatagcaatcgtcactatctgaaattctttcctgtatttgctaaatctgtgatta------tgaatatgt-----------aagcttcctgagaacaggagccttatttgctgaa-----------tagtacaatgccttg i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1200695 140 - 11655695 ctcatgt-tctcccacgttaccctgctatgtttcatagcacttgtcactatacaacattcttttctgagttta--------------a------taaa-gtgt-----------aagcttcatgagagtagagatgtttaatg-tgaacctctgcttcttagtacggtacctga i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84804925 1622 + 108143057 I e mm10.chr13 76427229 373 + 120421639 I a score=346227.000000 s hg38.chr5_GL383530v1_alt 3500 22 + 101241 agcataataacatctcaataag s panTro5.chr5 20232079 22 + 181907262 agcataataacatctcaataag i panTro5.chr5 C 0 C 0 s panPan2.chr5 20249387 22 + 183735486 agcataataacatctcaataag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4735425 22 - 13748885 agcatagtaacatctcaataag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53770670 22 - 163208435 agcataataacatctcaataag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87802633 22 - 180051392 agcataataacatctcaataag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87907047 22 - 181584905 agcataataacatctcaataag i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1130005 22 - 8785636 agcataataacatctcaataag i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1598175 22 + 27333823 agcataataacatctcaataag i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1868591 22 - 91010382 agcataataacatctcaataag i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1979674 22 + 5179401 agcataataacatctcaataag i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7685418 22 - 21726897 agcataataatatgtcaataag i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112504866 22 + 204313951 agcataacaacatctcagtaag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44951167 22 + 71252344 agcataataacatctcagtaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 315638 22 - 1393929 agcataataacatctcagtaag i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1391733 22 - 15889662 cgcataataacatctcagtaag i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84806547 22 + 108143057 AGCATAGTAACATCTCAGTAAA i micMur3.chr12 I 1622 I 1 s proCoq1.NW_012147189v1 550788 22 - 10520994 agtatagtaacatctcagtaag i proCoq1.NW_012147189v1 C 0 M 1165 s otoGar3.GL873536 1267699 22 - 29863360 agcatattagcatctcggtgag i otoGar3.GL873536 C 0 I 1 s canFam3.chr3 14288167 22 + 91889043 aacatagtaatgtctcagtaag i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1200835 20 - 11655695 aacatagt--tttctcaacaag i dasNov3.JH570378 C 0 I 5 e mm10.chr13 76427229 373 + 120421639 I a score=2862189.000000 s hg38.chr5_GL383530v1_alt 3522 233 + 101241 ga-tgcatgaattagtgagtgaataaaATAAGCTATTCTTATCAACTAGTCCTTGACTGATTTAACAGATATTTGTT-GAGTAGCTCATATA--CTACATAC-TGA-GGAGATTCAGCATTTTCCATGTAAGC--------CTACCTATTAGTAGTGTTAAGACATATTTA--TGC----ACTTT--AAAAATATAATA--------ATAAAGCTATAAGGAAAAAGTAGAAAATGAAAATATCATTAAAGAGGAAAGCA---TTT s panTro5.chr5 20232101 233 + 181907262 ga-tgcatgaattagtgagtgaataaaATTAGCTATTCTTATCAACTAGTCCTTGACTGATTTAACAGATATTTGTT-GAGTAGCTCATATA--CTACATAC-TGA-GGAGATTCAGCATTTTCCATGTAAGC--------CTACCTATTAGTAGTGTTAAGACATATTTA--TGT----GCTTT--AAAAATATAATA--------ATAAAGCTATAAGGAAAAAGTAGAAAATGTAAATATCATTAAAGAGGAAAGCA---TTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20249409 233 + 183735486 ga-tgcatgaattagtgagtgaataaaATTAGCTATTCTTATCAACTAGTCCTTGACTGATTTAACAGATATTTGTT-GAGTAGCTCATATA--CTACATAC-TGA-GGAGATTCAGCATTTTCCATGTAAGC--------CTACCTATTAGTAGTGTTAAGACATATTTA--TGT----GCTTT--AAAAATATAATA--------ATAAAGCTATAAGGAAAAAGTAGAAAATGTAAATATCATTAAAGAGGAAAGCA---TTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4735447 233 - 13748885 ga-tgcatgaattagtgagtgaataaaATAAGCTATTCTTATCAACTAGTCCTTGACTGATTTAACAGATATTTGTT-GAGTAGCTCATATA--CTACATAC-TGA-GGAGATTCAGCATTTTCCATGTAAGC--------CTACCTATTAGTAGTGTTAAGACATATTTA--TGC----GCTTT--AAAAATATAATA--------ATAAAGCTATAAGGAAAAAGTAGAAAATGAAAATATCATTAAAGAGGAAAGCA---TTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53770692 233 - 163208435 gattgcatgaattagtg-GTGAATAAAATACGCTATTCTTATCAACTAGTCCTTGACTGATTTAACAGATATTTGTT-GAGCAGCTCATACA--CTACATAC-TGA-GGAGATTCAGCATTTTCCATATAACC--------CTACCTATTAGTAGTGTTAAGACATATGTA--TGA----GCTTT--AAAAATATAATA--------ATAAAGCTATAAGGAAAAAGTAGAAAATGAAAATATTATTTAAAAGGAAAGCA---TTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87802655 233 - 180051392 gattgcatgaattagtgagtGAATAAAATAAGCTATTCTTATCAACTAGTCGTTGACTGATTTAACAGATATTTGTT-GAGTAGCTCATACA--CTACATAC-TGA-GGAGATTCAGCATTTTCCATATAAGC--------CTACCTAT---TAGTGTTAAGACATATATA--TGA----GCTTT--AAAAATATAGTA--------ATAAAGCTATAAGGAAAAAGTAGAAAATGAAAATATCATTAAAGAGGAAagca-ttttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87907069 234 - 181584905 gattgcatgaattagtgagtGAATAAAATAAGCTATTCTTATCAACTAGTCGTTGACTGATTTAACAGATATTTGTT-GAGTAGCTCATACA--CTACATAC-TGA-GGAGATTCAGCATTTTCCATATAAGC--------CTACCTAT---TAGTGTTAAGACATATATA--TGA----GCTTT--AAAAATATAGTA--------ATAAAGCTATAAGGAAAAAGTAGAAAATGAAAATATCATTAAAGAGGAAagcatttttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1130027 233 - 8785636 gattgcatgaattagtgagtGAATAAAATAAGCTATTCTTATCAACTAGTCGTTGACTGATTTAACAGATATTTGTT-GAGTAGCTCATACA--CTACATAC-TGA-GGAGATTCAGCATTTTCCATATAAGC--------CTACCTAT---TAGTGTTAAGACATATATA--TGA----GCTTT--AAAAATATAGTA--------ATAAAGCTATAAGGAAAAAGTAGAAAATGAAAATATCATTAAAGAGGAAagca-ttttt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1598197 233 + 27333823 gattgcatgaattagtgagtGAATAAAATAAGCTATTCTTATCAACTAGTCCTTGACTGATTTAACAGATATTTGTT-GAGTAGCTCATACA--CTACATAC-TGA-GGAGATTCAGCATTTTCCATATAAGC--------CTACCTAT---TAGTGTTAAGACATATATA--TGA----GCTTT--AAAAATACAGTA--------ATAAAGCTATAAGGAAAAAGTAGAAAATGAAAATATCATTAAAGAGGAAagca-ttttt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1868613 232 - 91010382 gattgcatgaattagtgagtGAATAAAATAAGCTATTCTTATCAACTAGTCCTTGACTGATTTAACAGATATTTGTT-GAGTAGCTCATACA--CTACATAC-TGA-GGAGATTCAGCATTTTCCATCTAAGC--------CTACCTAT---TAGTGTTAAGACATATGTA--TGA----GCTTT--AAAAATATAGTA--------ATAAAGCTATAAGGAAAAAGTAGAAAATGAAAATATCATTAAAGAGGAAagca--tttt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1979696 233 + 5179401 gactgcatgaattagtgagtGAATAAAATAAGCTATTCTTATCAACTAGTCCTTGACTGATTTAACAGATATTTGTT-GAGTAGCTCATACA--CTACATAC-TGA-GGAGATTCAGCATTTTCCATATAAGC--------CTACCTAT---TAGTGTTAAGACATATATA--TGA----ACTTT--AAAAATATAGTA--------ATAAAGCTATAAGGAAAAAGTAGAATATGAAAATATCATTAAAGAGGAAagca-ttttt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7685440 231 - 21726897 gattgcatgaattagtgagtGAATAAAATAAGCTATTCTTATCAACTAGTCCTTGACTGATTTAGCAGGTATTTGTT-GAGTAGCTCATACA--CTACATAG-TGA-GGAGATTCAGCATTTTCCATATAAGC--------CTACCTAT---TAGTGTTAAGACATATATA--TGA----GCTTT--AAAAATATAGTA--------ATAAAACTATAAGGAAAAAGTAGAAAATGAAAATATCATTAAAGAGGAAAGCA---TTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112504888 233 + 204313951 gattgcatgaattagtgagtGAAAAAAATAAGCTATTCCTCTCAACTAGTCTTTGACTAATTTAAAAGATATTTGTC--AGTAGCTCATACA--CTACATAC-TGA-GAAGATTCATCATTGTCCATATAAGC--------CTACCTATTAGTAGTATTAAGACATACATG--TGA----GCTTT--AAAAATATAATC--------ATAAAGCTATAAGTAAAAAGTAGAAAATGCAAATATTGTTAAAAAGGGAAGCA---TTT i calJac3.chr2 C 0 I 865 s saiBol1.JH378106 44951189 230 + 71252344 gattgcatgaattagtgagtGAAAAAAATAAGCTATTCTTCTCAACTAGTCTTTGACTAATTTAAAAGATACTTGTC--AGTAGCTCATACA--CTACACAC-TGA-GAAGATTCATCATTGTCCACAGAAGC--------CTACCTATTAGTAGTGTTAAGACATATATG--TGA----GCTTT--AAAAAT---ATC--------AGAAAGCTATAAGTAAAAAGTAGAAAATGCAAATATTGTTAAAAAGGGAAGCA---TTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 315660 232 - 1393929 gattgcatgaattagtgTGTG-AAAAAATAAGCTATTCTTCTCGACTAGTCTTTGACAAATTTAAAAGATATTTGTT--GGTAGCTCATATA--CTACATAC-TGA-GAAGATTCATCATTGTCCATATAAGC--------CTACCTATTAGTAGTGTTAAGACATATATG--TGA----GCTTT--AAAAATATAATC--------ATAAAGCTATAAGTAAAAAGTAGAAAATGCAAATGTTGTTAAAAAGGGAAGCA---TTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1391755 230 - 15889662 gattgcatgaattagtgagtGAAAAAAATAAGCTATTCTTCTCAACTGGTCTTTGACTAACTTAAAAGATATTTGTC--AGTAGCTCATACA--CTACATAC-TGA-GAAGATTCATCATTGTCCATATAAGC--------CTACCTATTAGTAGTGCTAAAACATATATG--TGA----GCTTG--AAAAATATAATC--------ATAAAGCTATAAGTAAAAAGTAGAAAATGCAAATA---TTAAAAAGGGAAGCA---TTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84806570 242 + 108143057 -GGTGCATGAATTAGTGAATGAATAAAATAAACTGTCCTTATCAACTAGTTCTTTACTAATTTAACAGATATTTGTT-GAGTAGCTCATGCACTATACATAC-TGA-GAGGATTGAGCATTGTCCATACAAGC--------TTCACTATTAGTGGTGTTAAGACATGTATA--TAAAACAGCTTT--AAAGATATCATA---GAACTATAGAAATATGA--AAAAAGTAGAGAATGAAAATATCATAAAAAATAAAAGCA---TTT i micMur3.chr12 I 1 C 0 s otoGar3.GL873536 1267722 224 - 29863360 -gtggcatgaattaataaatGAATAAAATCGACTATCCATATCAACTAGTCCTTCTCGGATTTAATAGATATCTGTT-GAGTAGCTCATATA--GCACATAC-TGA-GAGGATTCAGCATTGTCCTGATGGGC--------CTCACTATCAGTATGGTTAAGACATGTATA--TAAAAGGACTTT--ACAAATATTATA---GAACTACAGAAATATAAAGAAAAAGTAG------------------AAAAGAAAAGCA---TTT i otoGar3.GL873536 I 1 C 0 s canFam3.chr3 14288189 236 + 91889043 tattgaatgaattagtggatGAATAAAATAAACTATCCTTATCAACTGATCCTTCACTGATTTAACAGATATTTGTT-GAGAACCTCATCCT--CTACATAC-TGAGGGAGATTCAACATTGTCCATGCAATT----TTCACTATTTATTGGTGACGTTAAGATGTATATCATAGA----ACTTT--AAAAATAAAACCATTGAACTATACACCTATAAGGAAAAAGTGGGATATG------------AAAAGGAAAG-A---TCT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1200860 240 - 11655695 -gctgaatgaatTAGTGGATGGATAAAATACACATTCCTTTTCAATTAGTCCTTTACTGATTTAAAAGATATTTTTTTAAGTACCTGAAACA--CTAGGTACGGGA-GGTGATTCAGTATTGCCCATGCAAACCTCTCTCACTATCTATTAGTGACGTTAAGACATGTATA--TAAAAGAGCTTTCAACAACTATAATC--------ACAGAGGTATAAGGAAAAAGTGGGAAATAAAAGTAT-----ATAGAGAATGT------- i dasNov3.JH570378 I 5 C 0 e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e mm10.chr13 76427229 373 + 120421639 I a score=2063315.000000 s hg38.chr5_GL383530v1_alt 3755 174 + 101241 Ttgtgctaagtattg-ttctaggcatttcacataagttattctgtttaaattgtactcaagaacgcttccatttttatatcattgtattcatttttatagaggagaaaaagaaatccaaaagttaaataactggcttacagttgcccagctaggatgtggatggaccaaaattca s panTro5.chr5 20232334 174 + 181907262 Ttgtgctaagtattg-ttctaggcatttcacataagttattctgtttaaattgtactcaagaacgcttccatttttatatcattgtattcatttttatagaggaggaaaagaaatccaaaagttaaataactggcttacagttgcccagctaggatgtggatggaccaaaattca i panTro5.chr5 C 0 C 0 s panPan2.chr5 20249642 174 + 183735486 Ttgtgctaagtattg-ttctagtcatttcacataagttattctgtttaaattgtactcaagaacgcttccatttttatatcattgtattcatttttatagaggaggaaaagaaatccaaaagttaaataactggcttacagttgcccagctaggatgtggatggaccaaaattca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4735680 174 - 13748885 Ttgtgctaagtattg-ttctaggcatttcacataagttattctgtttaaattgtactctagaacgcttccatttttatatcattgtattcatttttatagaggaggaaaagaaatccaaaagttaaataactggcttacagttgcccggctaggatgtggatggaccaaaattca i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53770925 173 - 163208435 Ttgtgctaagtattg-ttctaggcatttcacataagttattctgtttaaattatactgaagaacgcttccatttatatatcattagattcatttttatagaggagt-aaagaaatctaaaagttaaataactggcttacagttgcccagctaggatgtggatggaccaaaattca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87802888 174 - 180051392 ttgtgctaagtattg-ttctaggcatttcacataaattattttgtttaaattgtactcaagaacgctttcatttatataccattatattcatttttatagaggaggaaaagaaacccaaaagttaaataactggcttacagttgcccagctaggatatggatggaccaaaattca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87907303 174 - 181584905 ttgtgctaagtattg-ttctaggcatttcacataaattattttgtttaaattgtactcaagaacgctttcatttatataccattatattcatttttatagaggaggaaaagaaacccaaaagttaaataactggcttacagttgcccagctaggatatggatggaccaaaattca i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1130260 174 - 8785636 ttgtgctaagtattg-ttctaggcatttcacataaattattttgtttaaattgtactcaagaatgctttcatttatataccattatattcatttttatagaggaggaaaagaaacccaaaagttaaataactggcttacagttgcccagctaggatatggatggaccaaaattca i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1598430 174 + 27333823 ttgtgctaagtattg-ttctaggcatttcacataaattattttgtttaaattgtactcaagaacgctttcatttatataccattatattcatttttatagaggaggaaaagaaacccaaaagttaaataactggcttacagttgcccagctaggatatggatggaccaaaattca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1868845 174 - 91010382 ttgtgctaagtattg-ttctaggcatttcacataaattattttgtttaaattgtactcaagaacgcttccatttatataccattatattcatttttatagaggaggaaaagaaacccaaaagttaaataactggcttacagttgcccagctaggatatggatggaccaaaattca i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1979929 174 + 5179401 ttgtgctaagtatcg-ttctaggcatttcacgtaaattattttgtttaaattgtactcaagaacactttcatttatataccattatattcatttttatagaggaggaaaagaaacccaaaagttaaataactggcttacagttgcccagctaggatatggatggaccaaaattca i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7685671 174 - 21726897 Ttgtgctaagtattg-ttctaggcatttcacataaattattttgtttaaattgtactcaagaatgcttccatttatatatcattatatttatttttatagaggaggaaaagaaacccaaaagttaaataactggcttacagttgcctagttaggatgtggatggaccaaaattca i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 44951419 174 + 71252344 Ttgtgccaagcatta-ttctaggcatttcacataagttattctgtttaaattgtgctcaagaacccttccatttatatatcattatgtccatttttatagaggaggaaaataaacccaaaagttaaataactggcatacagttgcccagctaggatgtgtatgtaccaaaattca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 315892 174 - 1393929 Ttgggctaagcatta-ttctaggcatttcacataagttattctgtttaaattgtgctcaagaacccttccatttatatatcattatgttcatttttatagaggaggaaaagaaacccaaaagttaaataactggcatacagttgcccagctaggatgtggatggatgaaaattca i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1391985 174 - 15889662 Ttgtgctaagcatta-ttctaggcatttcacataagttattctgtttaaattgtgctcaagaacccttccatttatatatcattatgctcatttttatagaggaggaatagaaacccaaaagttagataactggcatacagttgcccagctaggatgtggatggaccaaaattca i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84806812 168 + 108143057 -TTtgctaagcattt-tgctaggcatttcacataagttattccatttaaattatactcaacaacccttccatttacatatcattatat----ttttatgaagaaggaaaagaaactcagaagttaaataattgccatacagttgcccagctaggatgtaggtgggccaaaattc- i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1267946 173 - 29863360 -TTTACTGAGCATTTAAgctaggcatttcacatacattatttcatttaaattactctcaagaatgcttccttttatatattatcatattcacttttatgaaggaggaaaagaaattcagaagtgacataattggt-tacagttgctcaactaggatgtgggtgggccaaaattca i otoGar3.GL873536 C 0 I 3622 s canFam3.chr3 14288425 114 + 91889043 GTTTGATAAGCAT-A-TGCTAG------CACA---------------AAATT--------------TCACATTTATGTGTTGTTA----CATTTTTATAGAAGAAGAAAAGGCCTTAAGAAGTTAAGTAATTGT--------------------GAATAGATGGGTCAAAATTCA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1201100 166 - 11655695 AAAtgctaagcatta-tgctaggcatttcacacacgttattccatttggctcttacttaagaactcttcca-ttatgtattattatattcatttttatagaggaggaaaagaaggtcagaagtttaataattggtgtacagttgcccagttagca-------ggaccaaaattca i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e mm10.chr13 76427229 373 + 120421639 I e calJac3.chr2 112505121 865 + 204313951 I a score=372712.000000 s hg38.chr5_GL383530v1_alt 3929 33 + 101241 aacttatatcagcctgactctaaatcttatttt s panTro5.chr5 20232508 33 + 181907262 aacttatatcagcctgactctgaatcttatttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20249816 33 + 183735486 aacttatatcagcctgactctaaatcttatttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4735854 33 - 13748885 aacttatatcagcctgactctaaatcttatttt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53771098 33 - 163208435 aacttatatcagcctgactctaaatcttatttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87803062 33 - 180051392 aacttatatcaacctgactctaaatcttatttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87907477 33 - 181584905 aacttatatcaacctgactctaaatcttatttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1130434 33 - 8785636 aacttatatcaacctgactctaaatcttatttt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1598604 33 + 27333823 aacttatatcaacctgactctaaatcttatttt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1869019 33 - 91010382 aacttatattagcctgactctaaatcttatttt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1980103 33 + 5179401 aacttatatcaacctgactctaaatcttatttt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7685845 33 - 21726897 aacttacatcagcctgactctaaatcttatttt i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 44951593 33 + 71252344 aacttctatcatcctgattctaaatcttatttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 316066 33 - 1393929 aacttccatcagcctgactctaaatcttatttt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1392159 33 - 15889662 aacttctatcagcctgactctaaatcttatttt i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84806980 32 + 108143057 -acttatatcagtgtgacttcaaattttatttt i micMur3.chr12 C 0 C 0 s canFam3.chr3 14288539 33 + 91889043 AACTTGTATTGGTCAGACTCAAAATATTATTTT i canFam3.chr3 C 0 I 187 s dasNov3.JH570378 1201266 18 - 11655695 ---------------aattccaaatcttatttt i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e calJac3.chr2 112505121 865 + 204313951 I a score=1811400.000000 s hg38.chr5_GL383530v1_alt 3962 164 + 101241 ctttgcattatactaAACATAAAAA---------------------------------CCGTCTCCTCTCCTCtgtcaaaaactgtgaagggtctgaaatg----ttattatacttgcaagc-taaccagttagccaccacagtttcatgtatactgacacacaacacgaagttcctggattagaaacaaaggactttatga s panTro5.chr5 20232541 164 + 181907262 ctttgcattatactaAACATAAAAA---------------------------------CCGTCTCCTCTCCTCtgtcaaaaactgtgaagggtctgaaatg----ttattatacttgctagc-taaccagttagccaccacagtttcatggatactgacacacaacacgaagtccctggattagaaacaaaggactttatga i panTro5.chr5 C 0 C 0 s panPan2.chr5 20249849 164 + 183735486 ctttgcattatactaAACATAAAAA---------------------------------CCGTCTCCTCTCCTCtgtcaaaaactgtgaagggtctgaaatg----ttattatacttgcaagc-taaccagttagccaccacagtttcatggatactgacacacaacacgaagtccctggattagaaacaaaggactttatga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4735887 164 - 13748885 ctttgcgttatactaAACATAAAAA---------------------------------CCGTCTCCTCTCCTCtgtcaaaaactgtgaagggtctgaaatg----ttattatacttgcaagc-taaccagttagccaccacagtttcatggatactgacacacaacacgaagtccctggattagaaacaaaggactttatga i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53771131 164 - 163208435 cgttgcattatactaAACATAAAAA---------------------------------CCCTCTCCTCTCCTCtgtcaaaaactgtgaagggtctgaaatg----ttattatacttgcaagc-taaccagttagccgccgcagtttcatggatactgacacacaacacgaagtccctggattagagacaaaggactttataa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87803095 154 - 180051392 ctttgcattatactaAAAATAAAAA---------------------------------C-----CCTCTCCTCtgtcaaaaactgtgaagggtctgaaatg----ttattatccttgcaagc-taaccagttagccgccacagtttcatggatactgacatg-----caaggtccctggattagagacaaaggactttatga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87907510 159 - 181584905 ctttgcattatactaAAAATAAAAA---------------------------------CCCTCTCCTCTCCTCtgtcaaaaactgtgaagggtctgaaatg----ttattatccttgcaagc-taaccagttagccgccacagtttcatggatactgacatg-----caaggtccctggattagagacaaaggactttatga i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1130467 159 - 8785636 ctttgcattatactaAAAATAAAAA---------------------------------CCCTCTCCTCTCCTCtgtcaaaaactgtgaagggtctgaaatg----ttattatccttgcaagc-taaccagttagccgccacagtttcatggatactgacatg-----caaggtccctggattagagacaaaggactttatga i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1598637 159 + 27333823 ctttgcattatactaAAAATAAAAA---------------------------------CCCTCTCCTCTCCTCtgtcaaaaactgtgaagggtctgaaatg----ttattatccttgcaagc-taaccagttagccgccacagtttcatggatactgacatg-----caaggtccctggattagagacaaaggactttatga i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1869052 164 - 91010382 ctttgcattatactaAAAATAAAAA---------------------------------CCCTCTCCTCTCCTCtgtcaaaaactgtgaagagtctgaaatg----ttattatccttgcaagc-taaccagttagccaccacagtttcatggatactgacatgtaacacaaggtccctggattagagacaaaggactttatga i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1980136 159 + 5179401 ctttgcattatactaAAAATAAAAA---------------------------------CCCTCTCCTCTCCTCtgtcaaaaactgtgaagggtctgaaatg----ttattatccttgcaagc-taaccagttagccgccacagtttcatggatactgacatg-----caaggtccctggattagagacaaaggaccttatga i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7685878 164 - 21726897 ctttgcattatactaAAAATAAAAA---------------------------------CCCTCTCCTCTCCTCtgtcaaaaactgtgaagggtctggaatg----ttattatccttgcaagc-caaccagttagccgccacagtttcatggatactgacatgcaacacaaggtccctggattagagacaaaggactttatga i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 44951626 159 + 71252344 ctttatattatgctaAAAATAAAAA---------------------------------C-----CCTCTCCTCtgtcaaaaactgtgaagggtctgaaatg----ttactatacttgcaagc-taaccagttagccaccacagtttcatggataatgacacgcaacacgaggtccctggattagagacaaaggactgtatga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 316099 164 - 1393929 ctttatattatgctaAAAATAAAAA---------------------------------CCCTCTCCTCTCCTCtgtcaaaaactgtgaagggtctgaaatg----ttactatacttgcaagt-taaccagttagccaccacagtttcatggatactgacacgcaacatgaggtccctggattagagacaaaggactttatga i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1392192 169 - 15889662 ctttatattatgctaAAAATAAAAT---------------------------------CCCTCTCCTCTCCTCtgtcaaagactgtgaagggtctgaaatgttatttattatacttgcaagcttaaccagttagccaccacagtttcatagatactgacatgcaacatgtggtccctgggttagagacaaaggactttatga i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84807012 164 + 108143057 ctttccatcacacTCAAAATGAAAA---------------------------------CCTTTTCCTCTCCTCtgtcaaaaactgttaacagtctgagatt----ttactgtacttgcaagc-taacaggttagttgccatagtttcttggatgctgacagacaacacaagatgcctggatcagagacaaaggacttgatga i micMur3.chr12 C 0 I 508 s canFam3.chr3 14288759 159 + 91889043 CTTTCCATTTCACTAAAAATGAAAA---------------------------------C-----CCTCTCCTACgtcaaaaactttgaagtgtctgagatt----ttattgttcttgcaagt-tagcaagttagttgccatagtttcatggatactgacagaagacattagaaccctggggcagagccaaaggagttaatga i canFam3.chr3 I 187 C 0 s dasNov3.JH570378 1201284 197 - 11655695 ctttccattacaATAAAAATGAAAATGAACTTAGTTTCCCTGCCACCCTTCCTAAACCCTCTTCTCTCTCCTCtgtcagtaactgtgatggatctcagatt----ttactgaatttaaaagc-taacaagttaactgccacagtgtcaaggatgctggcagaaaacataagatccctgggtcagagacaaaagacttaatga i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e calJac3.chr2 112505121 865 + 204313951 I a score=252804.000000 s hg38.chr5_GL383530v1_alt 4126 27 + 101241 ttcctgacataacaataatatgagctt s panTro5.chr5 20232705 27 + 181907262 ttcctgacataacaataatatgagctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20250013 27 + 183735486 ttcctgacataacaataatatgagctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4736051 27 - 13748885 ttcctgacataacaataatatgagctt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53771295 27 - 163208435 ttcctgacatagcaatagcatgagctt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87803249 27 - 180051392 gtcatgacatagcaataacatgagctt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87907669 27 - 181584905 gtcatgacatagcaataacatgagctt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1130626 27 - 8785636 gtcatgacatagcaataacatgagctt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1598796 27 + 27333823 gtcatgacatagcaataacatgagctt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1869216 27 - 91010382 gtcatgacatagcaataacatgagctt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1980295 27 + 5179401 gtcatgacatagcaataacatgagctt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7686042 27 - 21726897 gtcatgacatagcaataatatgagctt i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 44951785 27 + 71252344 ttcatgacatagtaacaacatgagctt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 316263 27 - 1393929 ttcatgacatagtaacaacataagctt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1392361 27 - 15889662 ttcatgacatagtaacaacatgaggtt i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14288918 23 + 91889043 cttatgacatag----aagATGAACTT i canFam3.chr3 C 0 I 504 s dasNov3.JH570378 1201481 27 - 11655695 tttatgacatatcaacaacatgaacat i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e calJac3.chr2 112505121 865 + 204313951 I a score=1485452.000000 s hg38.chr5_GL383530v1_alt 4153 160 + 101241 cacattcatgttcattccctcagcccccaagtcccatggggcgatgcagagtggctcaggtagttgctgtacat---------ctgaatcacacagaaaacttgagcttagggaactcaacattt--cgtaacaggctacaaataaatgtgccctttgctTATCTTCATTA s panTro5.chr5 20232732 160 + 181907262 cacattcatattcattccctcagcccccaagtcccatggggcgatgcagagtggctcaggtagttgctgtacat---------ctgaatcacacagaaaacttgagcttagggaactcaacattt--cgtaataggctacaaataaatgtgccctttgctTATCTTCATTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20250040 160 + 183735486 cacattcatattcattccctcagccctcaagtcccatggggcgatgcagagtggctcaggtagttgctgtacat---------ctgaatcacacagaaaacttgagcttagggaactcaacattt--cgtaataggctacaaataaatgtgccctttgctTATCTTCATTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4736078 157 - 13748885 cacattcatgttcattccctcagccc-caagtcccatggggggatgcagagtggctcaggtagtta-tgtacat---------ctgaatcacacagaaaacttgagcttagggaactcaacattt---gtaataggctacaaataaatgtgccctttgcTTATCTTCATTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53771322 159 - 163208435 cacattcatgttcattccctcagcccccaggccccatggggtgatgcagagtggctcaggtagttgctgtgcac---------ctgaatcacacagaaaacttgagcttagggaactcaacattt--cataataggctacaaaaaaatgtgccctttgctTATC-TCATTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87803276 160 - 180051392 cgcgttcatgcttattccctcagccaccaggtcccatggggagatgcagagtggctcaggcagttgctgtacac---------ctgaattacacagaaaacttgagcttagggaactcaacattt--cataataggctacaaataaatgtgccctttgctTATCTTCATTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87907696 160 - 181584905 cgcattcatgctcattccctcagccaccaggtcccatggggagatgcagagtggctcaggcagttgctgtatac---------ctgaattacacagaaaacttgagcttagggaactcaacattt--cataataggctacaaataaatgtgccctttgctTATCTTCATTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1130653 160 - 8785636 cgcattcatgctcattccctcagccaccaggtcccatggggagatgcagagtggctcaggcagttgctgtacac---------ctgaattacacagaaaacttgagcttagggaactcaacattt--cataataggctacaaataaatgtgccctttgctTATCTTCATTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1598823 160 + 27333823 cgcattcatgttcattccctcagcccccaggtcccatggggagatgcagggtggctcaggcagttgctgtatac---------ctgaattacacagaaaacttgagcttagggaactcaacattt--cataataggctacaaataaatgtgccctttgctTATCTTCATTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1869243 160 - 91010382 cgcattcatgttcattccctcagcccccaggtcccatggggagatgcagagtggctcaggcagttgctgtacac---------ctgagctacacagaaaacttgagcttagggaactcaacattt--caaaataggctacaaataaatgtgccctttgctTATCTTCATTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1980322 160 + 5179401 cgcattcatgttcattccctcagcccccaggtcccatggggagatgcagagtggctcaggcagttgctgtatac---------ctgaattacacagaaaacttgagcttagggaactcaacattt--cataataggctacaaataaatgtgccctttgctTATCTTCATTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7686069 160 - 21726897 cgcattcatgttcattccctcaacccccaagtcccatggggagatgcagagtggctcaggcagttgctgtacac---------ctgaattacacagaaaacttgagcttagggaactcaacattt--cataataggctacaaataaatgtgccctttgctTATCTTCATTA i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 44951812 158 + 71252344 cacattcatgttagttccctcagaccctaagtcccatggggcagtgcagagtggctcaggtagctgctgtttgc---------ctgagtcacacagaaaacttgagcttag--aactcaacattt--cataataggctacaaataaatgggccctttgcttatcttcatta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 316290 160 - 1393929 cacattcacattagttccctcagaccccaagtcccatggggcagtgcagagtggctcaggtagctgctgttcac---------ctgagtcacacagaaaacttgagcttaggaaactcaacattt--cataataggctacaaataaatgtgccctttgcttatcttcatta i cebCap1.NW_016107830v1 C 0 I 9 s aotNan1.NW_018506370v1 1392388 160 - 15889662 cgcattcatgttagttccctcagaccccaagtcccatggggcagtgcagagtggctcaggtggttgctgttcgc---------ctgagtcacacagaaaacttgagcttagggaactcaacattt--cataataggctgcaaataaatgtgccctttgcttatcttcatta i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1201508 165 - 11655695 catattcatatcattctcct--gtccccaagtcccatgggatgatgcagaatagttcaagcagatgctgcacactgagtggatttaagtcataatgaggaa-tgagcttaggaaactcaa-atttagaatgacagactgcca--aaacgtgccttttgtttatctttatta i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14288941 504 + 91889043 I e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e calJac3.chr2 112505121 865 + 204313951 I a score=7085.000000 s hg38.chr5_GL383530v1_alt 4313 1 + 101241 T s panTro5.chr5 20232892 1 + 181907262 C i panTro5.chr5 C 0 C 0 s panPan2.chr5 20250200 1 + 183735486 C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4736235 1 - 13748885 C i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53771481 1 - 163208435 C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87803436 1 - 180051392 C i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87907856 1 - 181584905 C i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1130813 1 - 8785636 C i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1598983 1 + 27333823 C i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1869403 1 - 91010382 C i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1980482 1 + 5179401 C i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7686229 1 - 21726897 C i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 44951970 1 + 71252344 c i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1392548 1 - 15889662 c i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1201673 1 - 11655695 t i dasNov3.JH570378 C 0 I 6342 e canFam3.chr3 14288941 504 + 91889043 I e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e cebCap1.NW_016107830v1 316450 9 - 1393929 I e calJac3.chr2 112505121 865 + 204313951 I a score=1219.000000 s hg38.chr5_GL383530v1_alt 4314 1 + 101241 T s panTro5.chr5 20232893 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 20250201 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4736236 1 - 13748885 A i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53771482 1 - 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87803437 1 - 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87907857 1 - 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1130814 1 - 8785636 A i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1598984 1 + 27333823 A i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1869404 1 - 91010382 A i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1980483 1 + 5179401 A i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7686230 1 - 21726897 A i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 44951971 1 + 71252344 t i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1392549 1 - 15889662 t i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14288941 504 + 91889043 I e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e cebCap1.NW_016107830v1 316450 9 - 1393929 I e calJac3.chr2 112505121 865 + 204313951 I a score=1950175.000000 s hg38.chr5_GL383530v1_alt 4315 352 + 101241 TTTATTTTATTAtttttttattatacttttaagttctagggtacatgtgcacaacgtgcaggtttgttacttaggtaaacatgtgccatgttggtttgctgtacccatcaactcgtcatttacattaggtatttctcttaatgctatccctctcccaggcccccactctcccacaggccctggtgtgtgatgttccccgccctgtgtccatgtgttcttgttgttcaactcccacgtatgagtgagagcatgcggtgcttgcttttctgtccttgtgatagtttgcttagattgatggtttctagcttcatccatgtccctgcaaaggatatgaactcatccttttttatgg s panTro5.chr5 20232894 352 + 181907262 TTTATTTTATTAtttttttattatacttttaagttctagggtacatgtgcacaacgtgcaggtttgttacttaggtaaacatgtgccatgttggtttgctgtacccatcaactcgtcatttacattagatatttctcttaatgctatccctctcccaggcccccactctcccacaggccctggtgtgtgatgttccccgccctgtgtccatgtgttcttgttgttcaactcccacgtgtgagtgagagcatgcggtgcttgtttttctgtccttgtgatagtttgcttagattgatggtttctagcttcatccatgtccctgcagaggatatgaactcatccttttttatgg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20250202 352 + 183735486 TTTATTTTATTAtttttttattatacttttaagttctagggtacatgtgcacaacgtgcaagtttgttacttaggtaaacatgtgccatgttggtttgctgtacccatcaactcgtcatttacattagatatttctcttaatgctatccctctcccaggcccccactctcccacaggccctggtgtgtgatgttccccgccctgtgtccatgtgttcttgttgttcaactcccacgtgtgagtgagagcatgcggtgcttgtttttctgtccttgtgatagtttgcttagattgatggtttctggcttcatccatgtccctgcagaggatatgaactcatccttttttatgg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4736237 346 - 13748885 TTTAttt-----tttttttattatatttttaagttctagggtacatgtgcacaacgtgcaggtttgttacttaggtaaacatgtgccatgttggtttgctgtacccatcaactcgtcatttacattaggtatttctcttaatgctatccctctcccaggcctccgctctcccacaggccctggtgtgtgatgtt-cccgccctgtgtccatgtgttcttgttgttcaactcccacgtatgagtgagagcatgcggtgcttgtttttctgtccttgtgatagtttgcttagattgatggtttctagcttcatccatgtccctgcagaggatatgaactcatccttttttatgg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53771483 349 - 163208435 TTTAttt---ttttttattattatacttttaagttctagggtacatgtgcacaacatacaggtttgttacataggtaaacatgtgccatgttggtttgctgcacccattaacttgtcatttacattaggtatttctcttaatgctatccctctcccaggcccctgctctctgacaggccctggtgtgtgatgttccccgccctgtgtccatgtattcttgttgttcaactcccacgtatgagtgagaacatgcagtgtttgtttttctgtccttgtgatagtttgcttagattgatggttcacagcttcatccatgtccctataaaggacatgaactcatcattttttatgg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87803438 348 - 180051392 TTTATTCTAT--Cttttttgttatatttttaagttctagggtacatgtgcacaatgtgcaggtttgtcacataggtaaac--gtgtcatgttggtttgctacaccaatcaactcatcatttacattaggtatttctcttaatgctatccctcccccaggtccccactccctgacaggccctggtgtgtgatgttccccgccctgtgtccatgtgttcttgttgttcaactcccacatgtgagtgagaacatgtggtgtttgtttttctgtccttgtgatagtttgcttagattgatggtttccagcttcatccatgtccctgcaaaagacatgaactcatccttttttatgg i rheMac8.chr6 C 0 I 6 s macFas5.chr6 87907858 348 - 181584905 TTTATTCTAT--Cttttttgttatatttttaagttctagggtacatgtgcacaatgtgcaggtttgtcacataggtaaac--gtgtcatgttggtttgctacaccaatcaactcatcatttacattaggtatttctcttaatgctatccctcccccaggtccccactccctgacaggccctggtgtgtgatgttccccgccctgtgtccatgtgttcttgttgttcaactcccacatgtgagtgagaacatgtggtgtttgtttttctgtccttgtgatagtttgcttagattgatggtttccagcttcatccatgtccctgcaaaagacatgaactcatccttttttatgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1130815 348 - 8785636 TTTATTCTAT--Cttttttgttatatttttaagttctagggtacatgtgcacaatgtgcaggtttgtcacataggtaaac--gtgtcatgttggtttgctacaccaatcaactcatcatttacattaggtatttctcttaatgctatccctcccccaggtccccactccctgacaggccctggtgtgtgatgttccccgccctgtgtccatgtgttcttgttgttcaactcccacttgtgagtgagaacatgtggtgtttgtttttctgtccttgtgatagtttgcttagattgatggtttccagcttcatccatgtccctgcaaaagacatgaactcatccttttttatgg i macNem1.NW_012011400v1 C 0 I 6 s cerAty1.NW_012002401v1 1598985 348 + 27333823 TTTATTCTAT--Cttttttgttatatttttaagttctagggtacatgtgcacaatgtgcaggtttgtcacataggtaaac--gtgtcatgttggtttgctacaccaatcaactcatcatttacattaggtatttctcttaatgctatccctcccccaggtccccactccctgacaggccctggtgtgtgatgttccccgccctgtgtccatgtgttcttgttgttcaactcccacatgtgagtgagaacatgtggtgtttgtttttctgtccttgtgatagtttgcttagattgatggtttccagcttcatccatgtccctgcaaaagacatgaactcatccttttttatgg i cerAty1.NW_012002401v1 C 0 I 6 s chlSab2.chr4 1869405 348 - 91010382 TTTATTCTAT--Cttttttgttatatttttaagttctagggtacatgtgcacaatgtgcaggtttgtcacataggtaaac--gtgtcatgttggtttgctacaccaatcaactcatcatttacattaggtatttctcttaatgctgtccctcccccaggtcaccactccctgacaggccctggtgtgtgatgttccccgccctgtgtccatgtgttcttgttgttcaactcccacatgtgagtgagagcatgtggtgtttgtttttctgtccttgtgatagtttgcttagattgatggtttccagcttcaccgatgtccctgcaaaagacatgaattcatccttttttatgg i chlSab2.chr4 C 0 I 6 s manLeu1.NW_012103732v1 1980484 348 + 5179401 TTTATTCTAT--Cttttttgttatatttttaagttctagggtacatgtgcacaatgtgcaggtttgtcacgtaggtaaat--gtgtcatgttggtttgctacaccaatcaactcatcatttacattaggtatttctcttaatgctatccctcccccaggtccccactccctgacaggccctgatgtgtgatgttccccgccctgtgtccatgtgttcttgttgttcaactcccacatgtgagtgagaacatgtggtgtttgttttcctgtccttgtgatagtttgcttagattgatggtttccagcttcatccatgtccctgcaaaagacatgaactcatccttttttatgg i manLeu1.NW_012103732v1 C 0 I 6 s colAng1.NW_012115488v1 7686231 348 - 21726897 TTTATTCTAT--Cttttttgttatacttttaagttctagggtacatgtacacaatgtgcaggtttgtcacataggtaaac--gtgtcatgttggtttgctgcaccaatcaactcatcatttacattaggtatttctcttaatgctatccttcccccaggtccccactccccgacaggccctggtgtgtgacgttccctgccctgtgtccatgtgttcttgttgttcaactcccacatgtgagtgagagcatgtggtgtttgtttttctgtacttgtgatagtttgcttagattgatggtttccagcttcatccatgccccggcaaaagacatgaactcatccttttttatgg i colAng1.NW_012115488v1 C 0 I 6 e canFam3.chr3 14288941 504 + 91889043 I e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e aotNan1.NW_018506370v1 1392550 0 - 15889662 C e cebCap1.NW_016107830v1 316450 9 - 1393929 I e saiBol1.JH378106 44951972 0 + 71252344 C e calJac3.chr2 112505121 865 + 204313951 I a score=1795.000000 s hg38.chr5_GL383530v1_alt 4667 2 + 101241 ct s panTro5.chr5 20233246 2 + 181907262 ct i panTro5.chr5 C 0 C 0 s panPan2.chr5 20250554 2 + 183735486 ct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4736583 2 - 13748885 ct i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53771832 2 - 163208435 ct i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87908206 2 - 181584905 at i macFas5.chr6 C 0 C 0 e canFam3.chr3 14288941 504 + 91889043 I e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e aotNan1.NW_018506370v1 1392550 0 - 15889662 C e cebCap1.NW_016107830v1 316450 9 - 1393929 I e saiBol1.JH378106 44951972 0 + 71252344 C e calJac3.chr2 112505121 865 + 204313951 I e colAng1.NW_012115488v1 7686579 6 - 21726897 I e manLeu1.NW_012103732v1 1980832 6 + 5179401 I e chlSab2.chr4 1869753 6 - 91010382 I e cerAty1.NW_012002401v1 1599333 6 + 27333823 I e macNem1.NW_012011400v1 1131163 6 - 8785636 I e rheMac8.chr6 87803786 6 - 180051392 I a score=3632395.000000 s hg38.chr5_GL383530v1_alt 4669 4080 + 101241 gcatagtatcccatgatgtatatgtgccacattttcttaatccagtctatcactgatggacatatgggatcattccgagtctttgctattgtgaatagtgtcacagtaaacatacgtgtgcaagagtctttatagtagcatgagttataatcctttgggtatatacccagtaatgtgatcgctgggtcaaatggtatttccagttctagatccttgaggaattgccacactgtcttccacaatggttgaactaatttacactcccaccgacagtgaaaagcgttcctatttctccacatcctctccatcatctgttgcttcctgaatttttaatgatcgccattctaactggcgtgagatggtatctcattttggttttgatttgcatttctctgatgaccagtgatgatgagcattttttcatatgttttttggccacataaatgtcttcttttgagaagtatctgttcatatctttcacccactttctgatggggttttttttaattgtaaatttgtttaagttctttgtagattctgaatattagccctttgtcagatgggtagattgcaaagattttctcccattctgtaggttgcctgttcactctgatgatagtttcttttgctgttcagaagctctttagtttaattagatcccatttgtctattttggcttttgttgccattgcttttggtattttagtcatgaagtctttactcatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggtgttaggtcttacatttaagtctttaatccatcttgagttaatttttgtatacggtgtaaggaaggggtccagtttcagctttctacctatggttagccagttttcccagcaccatttattaaacagggaatccttcctccattgcttgtttttgtcagatttgtcaaagcttagatggttgtagatgttatttctgaggcctctgttctgttccattggtctatatatctgttttggtaccataccatcctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcgtgatgcctccagctttgttctttttgcttaggattgtcttggttatgtgggctcttttttggttccatctgaattttaaagtagttttttccaattctgtgaagaaagtcagaggtagcttgttggggatagcattgaatctataaattaccttgggcattctggccatttttacgatattgattcttcctatccatgagcatggaatgttcctccatttgcttgtgtcctcttttatttcattgagcagtggtttgtagttctccttaaagagatccttcacatcctgtgtaacttggattcctaggtattttattctctttgtagtaattgtgaataggagttcactcatgatttggctctc----tgtctattattggtgtataggaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacgatggggttttctaaatatatgattatgtcatctgcaaacagagacaatttgacttcctcttttcctagtcgaataccctttatttctttctcttgcctgattgccctggccagaacttccaatactatgttgaataggagtggtgagaaagggcatccttgtcttgtgccagttttcaaagggaatgcttccagcttttgcccattcagtataatattggctgtagttttgtcataaatagctcttattattttgagatatgttccatcaaaacctagtttattgagagttttta---------gctgttgaattttgttgaacgagacagaaggttaacaaggatatccaggacttgaactcagctctgcaccaagcatacctaatagatatctacagaactctataccccaaatcaacagatcatacattcttctcagtaccacatcacacttattctaaaattgaccacataattggaagtaaaacactcctcagcaaatgtaaaagaatagaaatcacaacaaactgtctctcacaccacagtgcaatcaaattagaactcaggattaagagactcactcaaaatcgcacaactacatggaaactgaacaacctgctcctgaatgactactgggtaaataacaaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaatgtaccagaatctctgggacccatttaaagcagcatgtagaggagaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaatcgacaccctaacatcacaattaaaagaactagagaagcaaaag-aaacaaattcaaaagctagcagaagcaaggaataactaagatcagagcagaactgaaggagacagagacacaaaaaaacccttcgaaaaatcaatgaatccaggagctggttttttgaaaagataaacaaaataggtagaccactagcaagactaataaagaagaaaagagagaagaatcaaatagatgcaataaaaaatgatacaggggacatcaccaccgatcccacagaaatacaatctaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaaggaataaattccgggacacataacaccctcccaagactgaaccaggaagaagttgaatctcttaatagaccaataacaga-tctgaaattgaggcaataattaatagcttaccaaccaaaaaaagtctaggaccaaatggattcacagctgaattctaccagaggtacaaagaggagctggtaccatttcttctgaaactatttcaatcaatagaaaaagagggaatcctccctaactcattttatgaggctgtcatcaccctgataccaaagcctggtagagacacaacaaaaaaagagaatcttaggccaatatccctgatgaacattgatgcaaaaatcctcaataaaatactggcaaattgaatccagcagcacttcaaaaagcttatccaccatgatctgtctaatattgacagtggggtgttaaagtctgccattattattgtgtgggagtctaagtctctttgtaggtctctaaggacttgctttatgaatctgggtgctcctgtattgggtgcatatatatttaggatagttagctcttcttgttgaattgatctctttaccattatgtagtggccttctttgtctcttttgatctttgttcatttaaagtcagttttatcagagattaggattgcaacccctgcttttta--t--tttttttttgctttccatttgcttggtatatcttcctccatccctttattttgagcctatgtgtgcctttgcatgtgagatgggtctcctgactctttatcctatttaccagtttatgtcttttaattggggcatttcgtccatttacatttaaggttaacattgttatgtttgaatttgatcctgtcattatgatgttagctggttattttgcctgttaattgatggagtttcttcatagcgtcaatggtctttacaatttggcatgtttttgcagtggctggtactagttattcctttccatatttagtgtttccttcaggagctcttgtaatgcaggcctggtgttgacaaaatctctcagcattt-cttgtctgtaaaggattttatttctccttcacttaggaagcttagtttggctggttatgagattctgggttgaaaattcttttctttaagaatgttgcatattggctccca--ctcttctggcttgtagggtttctgccgagagatccgctgttagtctgatgggcttccctttgtgggtaacccgacttttctctctggctgcgcttaaca-ttttttccttcatttcaaccttggtgaatttgacaattatgtgtcttggggttgctcttctccaggagtatctttgtggtgttttctgtatttcctgaatttgaatgttggcctgccttgctaggttagggaagttctcctggatagtatcctgaagagcgttttcta s panTro5.chr5 20233248 4086 + 181907262 gcatagtattccatgatgtgtatgtgccacattttcttaatccagtctatcattgatggacatatgggatcattccgagtctttgctattgtgaatagtgccacaataaacatacgcgtgcatgagtctttatagtagcatgagttataatcctttgggtatatacccagcaatgtgatcgctgggtcaaatggtatttccagttctagatccttgaggaattgccacacagtcttccacaatggttgaactaatttacactcccaccgacagtgaaaagcgttcctatttctccacatcttctccagcatctgttgcttcctgaatttttaatgatcaccattctaactggcgtgagatggtatctcattttggttttgatttgcatttctctgatgaccagtgatgatgagcattttttcatatgttttttggccacataaatgtcttcttttgagaagtatctgttcatatctttcacccactttctgatggggtttttttttattgtaaatttgtttaacttctttgtagattctgaatattagccctttgtcagatgggtagattgcaaagattttctcccattctgtaggttgcctgttcactctgatgatagtttcttttgctgttcagaagctctttagtttaattagatcccatttgtctattttggcttttgttgccattgcttttggtattttagtcatgaagtctttgctcatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggtgttaggtcttacatttaagtctttaatccatcttgagttaatttttgtatacggtgtaaggaaggggtccagtttcagctttctacttatggttagccagttttcccagcaccatttattaaatagggaatcctttctccattgcttgtttttgtcagatttgtcaaagcttagatggttgtagatgttatttctgaggtctctgttctgttccattggtctatatatctgttttgataccataccatcctgttttggttaccgtagccttgtagtatagtttgaagtcaggtagcgtgatgcctccagctttgttctttttgcttaggattgtcttggttatgtgggctcttttttggttccatctgaattttaaagtagttttttccaattctgtgaagaaagtcagaggtagcttgttggggatagcattgaatctataaattaccttgggcattctggccatttttacgatattaattcttcctatccatgagcatggaatgttcctccatttgcttgtgtcctcttttatttcattgagcagtggtttgtagttctccttaaagagatccttcacatcctgtgtaacttggattcctaggtattttattctctttgtagtaattgtgaatgggagttcactcatgatttggctctctgtttgtctattattggtgtataggaatgcttgtgatttttgcacattgcttttgtatcctgagactttgctgaagttgcttatcagcttaaggatattttgggctgagacgatggggttttctaaatatacgatcatgtcatctgcaaacagagacaatttgacttcctcttttcctaattgaataccctttatttctttctcttgcctgattgccctggccagaacttccaatactatgttgaataggagtggtgagaaagggcatccttgtcttgtgccagttttcaaagggaatgcttccagcttttgcccattcagtataatattggctgtgggtttgtcataaatagctcttattattttgagatatgttccatcaaaacctagtttattgagagttttta---------gctgttgaattttgttgaacgagacagaaggttaacaaggatatccaggacttgaactcagctctgcaccaagcagaactaatagatatctacagaactctataccccaaatcaacagaacatacattcttctcagtaccacatcacacttattctaaaattgaccacataattggaagtaaaacactcctcagcaaatgtaaaagaacagaaatcacaacaaactgtctctcacaccacagtgcaatcaaattagaactcaggattaagagactcactcaaaatcgcacaactacatggaaactgaacaacctgctcctgaatgactactgggtaaataacaaaatgaaggcagaaatgaagatgttctttgaaaccaatgagaacaaagacacaatgtaccagaatccctgggacccatttaaagcagcatgtagaggggaatttatagcaccaaatgcccacaagagaaagcaggaaagatctaaaatcgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacaaattcaaaagctagcagaagcaaggaataactaagatcagagcagaactgaaggagacagagacacaaaaaaacccttcgaaaaatcaatgaatccaggagctggttttttgaaaagataaacaaaa----tagaccactagcaagactaataaagaagaaaagagagaagaatcaaatagatgcaataaaaaatgataaaggggatatcgccactgatcccacagaaatacaatctaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaaggaataaattcctggacacacaacaccctcccaagactgaaccaggaagaagttgaatctctgaatagaccaataacaggttctgaaattgaagcaataattaatagcttaccaaccaaaaaaagtctaggaccaaatggattcacagctgaattctaccagaggtacaaagaggagctggtaccattccttctgaaactatttcaatcaatagaaaaagagggaatcctccctaactcattttatgaggctggcatcatcctgataccaaagcctggtagagacacaacaaaaaaagagaattttaggccaatatccctgatgaacattgatgcaaaaatcctcaataaaatactggcaaattgaacccagcagcacttcaaaaagcttatccaccatgatctgtctaatattgacagtgggatgttaaagtctgccattattattgtgtgggagtctaagtctttttgtaggtctctaaggacttgctttatgaatctgggtgctcctgtattgggtgcatatatatttaggatagttagctcttcttgttgaattgatccctttaccattatgtagtggccttctttgtctctttcgatctttgctcatttaaagtcagttttatcagagattaggattgcaacccctgctttttattt--tttttttttgctttccatttgcttggtatatcttcctccatccctttattttgagcctatgtgcacctttgcatgtgagatgggtctcctgactctttatcctatttaccagtttatgtcttttaattggggcatttcatccatttacatttaaggttaacattgttatgtttgaatttgatcctgtcattatgatgttagctggttattttgcccgttaattgatggagtttcttcatagcgtcaatggtctttacaatttggcatgtttttgcagtggctggtactagttattcctttccatatttagtgtttccttcaagagcttttgtaatgcaggcctggtgttgacaaaatctctcagcattt-cttgtctgtaaaggattttatttctccttcacttatgaagcttagtttggctggttatgagattctgggttgaaaattcttttctttaagaatgttgcatattggctcccactctcttctggcttgtagggtttctgctgagagatccgctgttagtctgatgggcttccctttgtgggtaacccgacttttctctctggctgcgcttaaca-ttttttccttcatttcaaccttggtgaatttgacaattatgtgtcttggggttgctcttctccaggagtatctttgtggtgttttctgtatttcctgaatttgaatgttggcctgccttgctaggttagggaagttctcttggataatatcctgaagagtgtttccta i panTro5.chr5 C 0 I 202 s panPan2.chr5 20250556 4091 + 183735486 gcatactattccatgatgtgtatgtgccacattttcttaatccagtctatcattgatggacatatgggatcattccgagtctttgctattgtgaatagtgccacagtaaacatacgcgtgcatgagtctttgtagtagcatgagttataatcctttgggtatatacccagcaatgtgatcgctgggtcaaatggtatttccagttctagatccttgaggaattgccacactgtcttccacaatggttgaactaatttacactcccaccgacagtgaaaagcattcctatttctccacatcttctccagcatctgttgcttcctgaatttttaatgatcaccattctaactggcgtgagatggtatctcattttggttttgatttgcatttctctgatgaccagtgatgatgagcattttttcatatgttttttggccacataaatgtcttcttttgagaagtatctgttcatatctttcacccactttctgatggggttttttttaattgtagatttgtttaacttctttgtagattctgaatattagccctttgtcagatgggtagattgcaaagattttctcccattctgtaggttgcctgttcactctgatgatagtttcttttgctgttcagaagctctttagtttaattagatcccatttgtctattttggcttttgttgccattgcttttggtattttagtcatgaagtgtttgctcatgcctatgtcctgaatggtattgtctaggttttcttctagggtttttatggtgttaggtcttacatttaagtctttaatccatcttgagttaatttttgtatacggtgtaaggaaggggtccagtttcagctttctacttatggttagccagttttcccagcaccatttattaaatagggaatcctttctccattgcttgtttttgtcagatttgtcaaagcttagatggttgtagatgttatttctgaggtctctgttctgttccattggtctatatatctgttttgataccataccatcctgttttggttaccgtagccttgaggtatagtttgaagtcaggtagcgtgatgcctccagctttgttctttttgcttaggattgtcttggttatgtgggctcttttttggttccatctgaattttaaagtagttttttccaattctgtgaagaaagtcagaggtagcttgttggggatagcattgaatctataaattaccttgggcattctggccatttttacgatattaattcttcctatccatgagcatggaatgttcctccatttgcttgtgtcctcttttatttcattgagcagtggtttgtagttctccttaaagagatccttcacatcctgtgtaacttggattcctaggtattttattctctttgtagtaattgtgaatgggagttcactcatgatttggctctctgtttgtctattattggtgtataggaatgcttgtgatttttgcacattgcttttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacgatggggttttctaaatatacgatcatgtcatctgcaaacagagacaatttgacttcctcttttcctaattgaataccctttatttctttctcttgcctgattgccctggccagaacttccaatactatgttgaataggagtggtgagaaagggcatccttgtcttgtgccagttttcaaagggaatgcttccagcttttgcccattcagtataatattggctgtgggtttgtcataaatagctcttattattttgagatatgttccatcaaaacctagtttattgagagttttta---------gctgttgaattttgttgaacgagacagaaggttaacaaggatatccaggacttgaactcagctctgcaccaagcagacctaatagatatctacagaactctataccccaaatcaacagaacatacattcttctcagtaccacatcacacttattctaaaattgaccacataattggaagtaaaacactcctcagcaaatgtaaaagaacagaaatcacaacaaactgtctctcacaccacagtgcaatcaaattagaactcagaattaagagactcactcaaaatcgcacaactacatggaaactgaacaacctgctcctgaatgactactgggtaaataacaaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaatgtaccagaatccctgggacccatttaaagcagcatgtagaggggaatttatagcaccaaatgcccacaagagaaagcaggaaagatctaaaatcgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacaaattcaaaagctagcagaagcaaggaataactaagatcagagcagaactgaaggagacagagacacaaaaaaacccttcgaaaaatcaatgaatccaggagctggttttttgaaaagataaacaaaatagatagaccactagcaagactaataaagaagaaaagagagaagaatcaaatagatgcaataaaaaatgataaaggggatatcaccactgatcccacagaaatacaatctaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaaggaataaattcctggacacataacaccctcccaagactgaaccaggaagaagttgaatctctgaatagaccaataacaggttctgaaattgaagcaataattaatagcttaccaacc-aaaaaagtctaggaccaaatggattcacagctgaattctaccagaggtacaaagaggagctggtaccattccttctgaaactatttcaatcaatagaaaaagagggaatcctccctaactcattttatgaggctggcatcatcctgataccaaagcctggtagagacacaacaaaaaaagagaattttaggccaatatccctgatgaacattgatgcaaaaatcctcaataaaatactggcaaattgaatccagcagcacttcaaaaagcttatccaccatgatctgtctaatattgacagtgggatgttaaagtctgccattattattgtgtgggagtctaagtctttttgtaggtctctaaggacttgctttatgaatctgggtgctcctgtattgggtgcatatatatttaggatagttagctcttcttgttgaattgatccctttaccattatgtagtggccttctttgtctctttcgatctttgctcatttaaagtcagttttatcagagattaggattgcaacccctgctttttattttatttttttttgctttccatttgcttggtatatcttcctccatccctttattttgagcctatgtgcacctttgcatgtgagatgggtctcctgactctttatcctatttaccagtttatgtcttttaattggggcatttcatccatttacatttaaggttaacattgttatgtttgaatttgatcctgtcattatgatgttagctggttattttgcccgttaattgatggagtttcttcatagcgtcaatggtctttacaatttggcatgtttttgcagtggctggtactagttattcctttccatatttagtgtttccttcaggagctcttgtaatgcaggcctggtgttgacaaaatctctcagcattt-cttgtctgtaaaggattttatttctccttcacttatgaagcttagtttggctggttatgagatgctgggttgaaaattcttttctttaagaatgttgcatattggctcccactctcttctggcttgtagggtttctgctgagagatccgctgttagtctgatgggcttccctttgtgggtaacccgacttttctctctggctgcgcttaaca-ttttttccttcatttcaaccttggtgaatttgacaattatgtgtcttggggttgctcttctccaggagtatctttgtggtgttttctgtgtttcctgaatttgaatgttggcctgccttgctaggttagggaagttctcttggataatatcctgaagagtgtttccta i panPan2.chr5 C 0 I 202 s gorGor5.CYUI01014999v1 4736585 4083 - 13748885 gcatagtattccatgatgtatatgtgccacattttgttaatccagtctatcattgatggacatatgggatcattccgagtctttgctattgtgaatagtgccacaataaacatacgtgtgcatgagtctttatagtagcatgagttataatcctttgggtatatacccagtaatgtgatcactggatcaaatggtatttccagttctagatccttgaggaattgccacactgtcttccacaatggttgaactaatttacactcccactgacagtgaaaagtgttcctatttctccacatcctctccagcatctgttgcttcctgaatttttaatgattgccattctaactggcgtgagatggtatctcattttggttttgatttgcatttctctgatgaccagtgaggatgagcattttttcgtatgttttttggccacataaatgtcttcttttgagaagtatctgttcatatctttcacccactttctgatggggttttttttaattgtaaatttgtttaagttctttgtagattctgaatattagccctttgtcagatgggtagattgcaaagatttt-tcccattctgtaggttgcctgttcactctggtggtagtttcttatgctgttcggaagctctttagtttaattagatcccatttgtctattttggcttttgttgccattgcttttggtattttagtcatgaagtctttgctcatgcctatgtcctgaatggtaatgcctaggttttcttctagggtttttatggtgttaggtcttacatttaagtctttaatccatcttgagttaatttttgtatacggtgtaaggaaggggtccagtttcagctttctacctatggttagccagttttcccagcaccatttattaaatacggaatcctttctccattgcttgtttttgtcagatttgtcaaagcttagatggttgtagatgttatttctgaggcctctgttctgttccattggtctatatatctgttttggtaccataccatcgtgttttggttaccgtagccttgtagtataatttgaagtcaggtagcatgatgcctccagctttgttctttttgcttaggattgtcttggttatgtgggctcttttttggttccatctgaattttaaagtagttttttccaattctgtgaagaaagtcagagatagcttgttggggatagcactgaatctataaattaccttgggcattctggccatttttacgatattgattcttcctatccatgagcatggaatgttcctccatttgcttgtgtcctcttttatttcactgagcagtggtttgtagttctccttaaagagatccttcacatcctgtgtaacttggattcctaggtattttattctctttgtagtaattgtgaatgggagttcactcatgatttggctctctgtttgtctattattggtgtataggaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacgatggggttttctagatatacgatcatgtcatctgcaaacagggacaa-ttgacttcctcttttcctaactgaataccctttatttctttctcttgcctgattgccctggccagaacttccaatactatgttgaataggagtggtgagaaagggcatccttgtcttgtgctagttttcaaagggaatgcttccagcttttgcccattcagtataatattggctgtgggtttgtcataaatagctcttattattttgagatatgttccatcaaaacctagtttattgagagttttta---------gctgttgaattttgttgaacgagacagaaggttaacaaggatatccaggacttgaactcagctctgcaccaagctgacctaatagatatctgcagaactttataccccaaatcaacagaacatacattcttctcagtaccacatcacacttattctaaaattgaccacataattggaagtaaaacactcctcagcaaatgtaaaagaacagaaatcacaacaaactgtctctcacaccacagtgcaatcaaattagaactcaggattaagagactcactcaaaatcgcacaactacatggaaactgaacaacctgctcctgaatgactactgggtaaataacaaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaatgtaccagaatctctgggacccatttaaagcagcatgtagaggggaatttatagca-taaatgcccacaagagaaagcaggaaagatctaaaatcgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacaaattcaaaagctagcagaagcaaggaataactaagatcagagcagaactgaagcagacagagacacaaaaaaa-ccttcgaaaaatcaatgaatccaggagctggttttttgaaaagataaacaaaatagatagaccactagcaagactaataaagaagaaaagagagaagaatcaaatagatgcaataaaaaatgataaaggggatatcaccac-gatcccacagaaatacaatctaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaaggaataaattcctggacacgtaacaccctcccaagactgaacaaggaagaagttgaatctctgaatagaccaataacatcttctgaaattgaagcaataattaacagcttactaaccaaaaaaagtctaggaccaaatggatgcacagctgaattctaccagaggtacaaagaggagctggtaccattccttctgaaactatttcaatcaatagaaaaagagggaatcctccctaactcattttatgaggctggcatcatcctgataccaaagcctggtagagacacaac-aaaaaagagaattttaggccaatatccctgatgaacatttatgcaaaaatcctcaataaaatactggcaaattgaatccagcagcacttcaaaaagcttatccaccatgatctgtctaatattgacagtggggtgttaaagtctgccattattattgtgtgggagtctaagtctctttgtaggtctctaaggacttgctttatgaatctgggtgttcctgtattgggtgcatatatatttaggatagttagctcttcttgttgaattgatccctttaccattatgtagtggccttctttgtctcttttgatctttgttcatttaaagtcagttttatcagagattaggattgcaacccctgctttttattt--tttttttttgctttccttttgcttggtatatcttcctccatccctttattttgagcctatgtgcgcctttgcatgtgagatgggtctcctgactctttatcctatttaccagtttatgtcttttaattggggcatttcatccatttacatttaaggttaacattgttatgtttgaatttgatcc-gtcattatgatgttagctggttattttgcccattaattgatggagtttcttcatagcgtcaatggtctttacaatttggcatgtttttgcagtggctggtactagttattcctttccatatttagtgtttccttcaggagctcttgtaatgcaggcctggtgttgacaaaatctctcagcattt-cttgtctgtaaaggattttatttctccttcacttatgaagcttagtttggctggttatgagattctgggttgaaaattcttttctttaagaatgttgcatattggctcccactctcttctggcttatagggtttcttccgagagatccgctgttagtctgatgggcttccctttgtgggtaacccgacttttctctctggctgcgcttaaca-ttttttccttcatttcaaccttggtgaatttgacaattatgtgtcttggggttgctcttctccaggagtatctttgtggtgttttctgtatttcctgaatttgaatgttggcctgccttgctaggttagggaagttctcctggataatatcctgaagagtgttttcta i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53771834 4096 - 163208435 gcatagtattccatgatgtatatgtgccacagttgcttaatccagtctatcattgatggacatatgggatcattccaagtctttgctattgtgaatagtgccacaataaacatacgtgtgcatgtgtctttattgtagcatgagttataatcctttgggtatatacccagtaatgtgattgctgggtcaaatggtatttctaactctagatccttgaggaatcgccacactgtcttccacaattgttgaactaatttacactcccaccaacagtgaaaagcattcctatttctccatatcctctccagcatctgttgtttcccaactttttaatgattgccattctgactggcatgagatggtatctcattgtggttttgatttgcatttctctgatgaccagtgatgatgagcattttttcatatgtttgttggccacataaatgtcttcttttgagaagtatctgttcatatccttcacccactttctgttggggtttttttaaattgtaaatttgtttaagttctttgtagattctgaatattagccctttgtcagatgagtaaattgcaaagattttctcccattctgtaggttgcctgttcactctgattatcatttcttttgctgttcagaagctctttagtttaattagatcccatttgtctattttggcttttgttgccattgcttttggtattttagtcatgaagtctttgctcatgcctatgtcctgaatggtattgcctaggttttcttttagggtttttatggtgttaggtcttacatttaagtctttaatccatcatgagttaatttttgtataaggtgtaaggaaggggtcaagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatcctttctccattgcttgtttttgtcagatgtgccaaagcttagatggtagtagatgttatttctgaggcctctgttctgttccattggtctgtatatctgttttggtaccataccatcctgttttggttaccgtagccttgtaatatagtttggaatcaggtagcgtgatgcctccagctatgttctttgtgcttaggattgtcttggttatgtgggctcttttttggttccatctgaactttaaagtag-tttttccaattctgtgaagaaagtcagaggtagcttgatggggatagcattgaatctataaattaccttgggcattatggccatttttacgatattgattcttcttatccatgagcatggaatgttcctccatttgtttgtgtcctcttgtatttcattgagcagtggtttgtagttctccttaaagagatccttcacatcctgtgtaacttggattcctaggtattttattctctttgtagtagttgtgaatgggagttcactcatgatttggctatt----tgtctattattggtgtataggaatgcttgtgatttttgcacattgattttgtatactgagactttgctgaagttgcttatcagcttaaggagattttgggctgagatgatggggttttctaaatatatgatcatgtcatctgcaaacagaaacaattcgacttcctcttttcctaattgaataccctttatttctttctcttgcctgattgccctagccagaacttccaatactatgttgaataggagtggtgagagagggcatccttgtcttgtgctggttttcaaagggaatgcttccagcttttgcccattcagtataatattggctgtgggtttgtcataaatagctcttattattttgagatatgttccatcaaaacctagtttattgagagtttttagcctgaagggctgctgaattttgttgaacgagacagaaggttaacaaggatatccaggaattgaactcaactctacaccaagcagacctaatagatatctacagaactctacaccccgaatcaacagaatatacattcttctcagtaccacttcacacttattctaaaattgaccacataattggaagtaaaacactcctcagcaaatgtaaaagaacagaaatcacaacaaactgtctctcacaccacagtgcaatcaaactagaactcaggattgagaaactcactgaaaatcgcacaactacatggaaactgaacaacctgctcctgaatgacaactcggtaaataatgaaatgaaggcagaagtaaagatattctttgaaacaaatgagaacaaagatacaatgtaccagaatctctgggacccatttaaaacagcatgtagagggaaatttatagcactaaatgcccacaagagaaagcagaaaagatctaaaatcgacactctaacatcataattaaaagaactagagaagcaagagcaaacaaattcaaaagctagcagaaggaagaaataactaagatcagagcagaactgaaggaaatagagacacaaaaaac-ccttcaaaaaatcaatgaatccaggagctggttttttgaaaagttaaacaaaatagatagaccactagcaagactaataaagaagaaaagagagaagaatcaaatagatgctataaaaaatcataaaggggatatcaccaccaatcccacagaaatacaatctaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaatggataaattcctggacacat-acaccctcccaagactgaaccaggaaggagttaaatccctgaatagaccaataataggttctgaaatttgggcaataattaatagcctaccaaccaaaaaaagtccaggaccaaatggattcacagctgaattctatcagaggtataaagaggagctggtaccattccttctgaaactattccagtcaatagaaaaagagggaatcctccctaactcattttatgaggctagcatcatcctgataacaaagcctggtagagacacaacaaaaaaagagaattttaggccaatatccctgatgaacattgacgcaaaaatcctcaataaaatactggcaaattgaatccagcagcacatcaaaaagcttatccaccacaatctgtataatattgacagtggggtgttaaagtctgccattattattgtgtgggagtctaagtctctttgtaggtctctaaggacttgctttatgaatctgggtgctcctgtattgggtgcatatatatttaggatagttagctcttcttgttgaattgatccctttaccattatgtcgtggccttctttgtctcttttgatctttgttcatttaaagtcggttttatcagagattaggattgcaactcctgctttttattttatttttttttgctttccatttgcttggtgtatcttcctccatccctttattttgagcctatgtgtgccttcacatgtgagatgggtctcctgactctttatactgtttgccagtttatgtcttttaattggggcatttagtccatttacacttaaggttaatattgttatgtttgaatttgatcttgtcattatgatgttagctggttattttgcccattaattgatggagtttcttcatagtgtcagtggtctttacaatttggcatgtttttgcagtggcttgtagcagttattcctttccatatttactgcttccttcaggggctcttgtaatgcaggcctggtggtgacaaaatctttcagcgtttgcttgtctgtaaaggattttatttctccttcacttatgaagcctagtttggctggttatgagattctgggttgaaaattcttttctttaagaatgtggcatattggctgccactctcttctggcttgtagggtttctgccgagagatctgctgttagtctgatgggcttccctttgtgggtaacccgacttttctctctggctgcccttaacatttttttccttcatttcaactatggtgaatttgacaattatgtgtcttggggttgctcttctagaggagtatctttgtggtgttctctgtatttcctgaatttgaatgttggcctgcctttctaggttaggaaagttctcctggataatatcctgaagagtgttttcta i nomLeu3.chr2 C 0 C 0 e canFam3.chr3 14288941 504 + 91889043 I e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e aotNan1.NW_018506370v1 1392550 0 - 15889662 C e cebCap1.NW_016107830v1 316450 9 - 1393929 I e saiBol1.JH378106 44951972 0 + 71252344 C e calJac3.chr2 112505121 865 + 204313951 I e colAng1.NW_012115488v1 7686579 6 - 21726897 I e manLeu1.NW_012103732v1 1980832 6 + 5179401 I e chlSab2.chr4 1869753 6 - 91010382 I e cerAty1.NW_012002401v1 1599333 6 + 27333823 I e macNem1.NW_012011400v1 1131163 6 - 8785636 I e macFas5.chr6 87908208 0 - 181584905 C e rheMac8.chr6 87803786 6 - 180051392 I a score=4501.000000 s hg38.chr5_GL383530v1_alt 8749 19 + 101241 gcttggttccattctccct s gorGor5.CYUI01014999v1 4740668 19 - 13748885 acttggttccattctcccc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53775930 19 - 163208435 acttggttgcattctcccc i nomLeu3.chr2 C 0 C 0 e canFam3.chr3 14288941 504 + 91889043 I e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e aotNan1.NW_018506370v1 1392550 0 - 15889662 C e cebCap1.NW_016107830v1 316450 9 - 1393929 I e saiBol1.JH378106 44951972 0 + 71252344 C e calJac3.chr2 112505121 865 + 204313951 I e colAng1.NW_012115488v1 7686579 6 - 21726897 I e manLeu1.NW_012103732v1 1980832 6 + 5179401 I e chlSab2.chr4 1869753 6 - 91010382 I e cerAty1.NW_012002401v1 1599333 6 + 27333823 I e macNem1.NW_012011400v1 1131163 6 - 8785636 I e macFas5.chr6 87908208 0 - 181584905 C e rheMac8.chr6 87803786 6 - 180051392 I e panPan2.chr5 20254647 202 + 183735486 I e panTro5.chr5 20237334 202 + 181907262 I a score=402705.000000 s hg38.chr5_GL383530v1_alt 8768 453 + 101241 gtcactttccggtacaccaatcaaatgtagatttggtcttttcacatagtctcatatttcttggaggctttgttcatttcttttcactcttttttttttt--ctaatcttgtcttcatgctttatttcattaatttgatcttcagtcactgatatcctttcttccacttgatcaaattggctattgaaacttgtgcatgcatcacaaagttctcgtgctgtggttttcagctccatcaggtcatttaaggtcttctctacactgtttattctagttagccatttgtctaactt-ttttcaaggtttttagtttccttgcgatgggttagaacatgcgcctttagctcggagaagtttcttagtatggaccttctgaagcctacttctgtcaacttgtcaaagtcattctccatccagctttgttcccttgctggcgaggagctgtgatcctttgga s panTro5.chr5 20237536 455 + 181907262 gtcactttccggtacaccaatcaaatgtagatttggtcttttcacatagtctcatatttcttggaggctttgttcatttcttttcactctttttttttttttctaatcttgtcttcatgctttatttcattaatttgatcttcagtcactgatatcctttcttccacttgatgaaatcggctattgaaacttgtgcatgcatcacaaagttctcgtgctgtggttttcagctccatcaggtcatttaaggtcttctctgcactgtttattctagttagccatttgtctaactt-ttttcaaggtttttagtttccttgcgatgggttagaacatgctcctttagctcggagaagtttcttatgatggaccttctgaagcctacttctgtcaacttgtcaaagtcattctccatccagctttgttcccttgctggcgaggagctgtgatcctttgga i panTro5.chr5 I 202 C 0 s panPan2.chr5 20254849 454 + 183735486 gtcactttccggtacaccaatcaaatgtagatttggtcttttcacatagtctcatatttcttggaggctttgttcatttcttttcactcttttttttttt-tctaatcttgtcttcatgctttatttcattaatttgatcttcagtcactgatatcctttcttccacttgatgaaatcggctattgaaacttgtgcatgcatcacaaagttctcgtgctgtggttttcagctccatcaggtcatttaaggtcttctctgcactgtttattctagttagccatttgtctaactt-ttttcaaggtttttagtttccttgcgatgggttagaacatgctcctttagctcggagaagtttcttatgatggaccttctgaagcctacttctgtcaacttgtcaaagtcattctccatccagctttgttcccttgctggcgaggagctgtgatcctttgga i panPan2.chr5 I 202 C 0 s gorGor5.CYUI01014999v1 4740687 453 - 13748885 gtcactttccggtacaccaatcaaatgtagatttggtcttttcacatagtctcatatttcttggaggctttgttcatttcttttcactcttttttttttt-tctaatcttgtcttcgtgctttatttcattaatttgatcttcagtcactgatatcctttcttccacttgataaaatc-gctattgaaacttgtgcatgcatcacaaagttctcgtgctgtggttttcagctccatcaggtcatttaaggtcttctctacactgtttattctagttagccatttgtctaactt-ttttcaaggtttttagtttccttgcgatgggttagaacatgctcctttagctcggagaagtttcttattatggaccttctgaagcctacttctgtccacttgtcaaagtcattctccatccagctttgttcccttgctggcgaggagctgtgatcctttgga i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53775949 455 - 163208435 atcactttctggtataccaatcaaatgtagatttggtcttttcacatagtcccatatttcttggaggctttgttcatttcttttcactcttttttttttt-tctaatcttgtcttcaagctttatttcattaatttgatcttcaatcactgatatcctttcttccacttgatcaaatcagctattgaagcttgtgcatgcatcatgaagttctcgtgctgtggttttcagctccatcaggtcatttaaggtcttctctacactgtttattctagttagcctatcgtctaacttcttttcaaggtttttagcttccttgcgatgggttagaacatgcttctttagctcggagaagtttgttattaccgaccttctgaagcctacttctgtcaacttgtcaaagtcattctccatccagctttgttctcttgctggcgaggagctgcgatcctttgga i nomLeu3.chr2 C 0 C 0 e canFam3.chr3 14288941 504 + 91889043 I e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e aotNan1.NW_018506370v1 1392550 0 - 15889662 C e cebCap1.NW_016107830v1 316450 9 - 1393929 I e saiBol1.JH378106 44951972 0 + 71252344 C e calJac3.chr2 112505121 865 + 204313951 I e colAng1.NW_012115488v1 7686579 6 - 21726897 I e manLeu1.NW_012103732v1 1980832 6 + 5179401 I e chlSab2.chr4 1869753 6 - 91010382 I e cerAty1.NW_012002401v1 1599333 6 + 27333823 I e macNem1.NW_012011400v1 1131163 6 - 8785636 I e macFas5.chr6 87908208 0 - 181584905 C e rheMac8.chr6 87803786 6 - 180051392 I a score=3065.000000 s hg38.chr5_GL383530v1_alt 9221 4 + 101241 -ggag s panTro5.chr5 20237991 4 + 181907262 -ggag i panTro5.chr5 C 0 C 0 s panPan2.chr5 20255303 4 + 183735486 -ggag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4741140 4 - 13748885 -ggag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53776404 4 - 163208435 -ggag i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87908208 4 - 181584905 gGGA- i macFas5.chr6 C 0 C 0 e canFam3.chr3 14288941 504 + 91889043 I e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e aotNan1.NW_018506370v1 1392550 0 - 15889662 C e cebCap1.NW_016107830v1 316450 9 - 1393929 I e saiBol1.JH378106 44951972 0 + 71252344 C e calJac3.chr2 112505121 865 + 204313951 I e colAng1.NW_012115488v1 7686579 6 - 21726897 I e manLeu1.NW_012103732v1 1980832 6 + 5179401 I e chlSab2.chr4 1869753 6 - 91010382 I e cerAty1.NW_012002401v1 1599333 6 + 27333823 I e macNem1.NW_012011400v1 1131163 6 - 8785636 I e rheMac8.chr6 87803786 6 - 180051392 I a score=5959525.000000 s hg38.chr5_GL383530v1_alt 9225 1138 + 101241 aagaggtgctctg------------ttttttggaatgttcagcttttctggtctggtttctctccatctttgtggttttatctacctttggtctttgatgttgatgttggtgacctacagatggggttttggtgtggatgtcctttttgttgatg--------ctattcctttctgtttgttagttttccttctaac----agacccctcagctgtaggtctattggagtttgctggaggtccactccagaccctgtttgcctgggtatcacaggtggaggctgcagaacagctaatattgctgcctgatccttcctctggaagcttcatcccagaggggcacctgcctgtttgaggtgtctgtcagcccctactgggaggggtttcccagtcaggcga-----------------cacttgaggaggcagtctgaccgttcttggagctcaaacgccatgctgagagaacctctgctctcttcagagctgtcagatggggacgtttacatctgcagaagctgtctgctgccttttgttctgctatgccctgcccccagaggtggaatctatagagccagtaggccttgctgagctgcggtgtgctccacccagttcatgcttcccagcagcttggtttacactgtgagctacttaagcctcagcaatggcagatgtccctcctcccgtcaagctgcagtgtcacagattgatcgcagactgttgcgctagcagtgagcaaagctctgtgggcataggacctgccaagccaggcataggagggtatctcctggtctgccggttgctaagaccatgggaaaagagcagtatttggtcagtagtgtaccatttctccaggtacagtctgtcacggcttcccttggctaggaaagggaaatccccccaccccttgtgcttcccgggtgaggtgatgccccgccctgctttggctcatcctccgtgggctgcacccactgtccaaccagtcccaatgagatgaaccaggtacctcagttggaaatgcagaaatcacctgtcatctgcgtcgatcttgctgggagctatagaccgATATACAGATGTACATTtatacttcagtttgttcatgcattcacctgttaatggacctttgagctgtttctacttttGTATTCCTATTCAGCCATCTTGGAAGCAACCT s panTro5.chr5 20237995 1130 + 181907262 aagaggtgctctg------------ttttttggaattttcagcttttctggtctggtttctctccatctttgtggttttatctacctttggtctttgatgttgatgttggtgacctacagatggggttttggtgtggatgtccttttggttgatg--------ctatttctttctgtttgttagttttccttctaag----agaccactcagctgtaggtctgttggagtttgctggaggtccactccagaccctgtttgcctgggtatcacaggtggaggctgcagaacagctaatatttctgcctgatccttcctctggaagcttcatcccagaggggcacctgcctgtttgaggcatctgtcagcccctactgggaggggtttcccagtcaggcta-----------------cacttgaggaggcagtctgaccgttcttggagctcgaacgccatgctgagagaacctctgctctcttcagagctgtcagatggggacgtttacatctgcagaagctgtctgctgccttttgttctgctatgccctgcccccagaggtggaatctatagagccagtaggccttgctgagctgcggtgtgctccacccagttcatgcttcccagcagcttggtttacactgtgagctacttaagcctcagcaatggcagatgtccctctccccgtcaagctgcagtgtcacagattgatctcagactgttgtgctagcagtgagcaaagctctgtgggcataggacctgccgagccaggcataggagggtatcacctggtctgccggttgctaagaccatgggaaaagagcagtatttggtcagtagtgtaccgtttctccaggtacagtctttcatggcttcccttggctaggaaagggaaatcccccgaccccttgtgcttcccgggtgaggtgatgccccaccctgctttggctcatcctccgtgggctgcacccactgtccaaccagtcccaatgagatgaaccaggtacctcagttggaaatgcagaaatcacctgtcatctgcgtcgatcttgctgggagctatagaccgAtgtacag--------ttatacttcaatttgttcatgcattcacctgttaatggacctttgagctgtttctacttttGTATTCCTATTCAGCCATCGTGGAAGCAACCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20255307 1130 + 183735486 aagagatgctctg------------tttcttggaattttcagcttttctggtctggtttctctccatctttgtggttttatctacctttggtctttgatgttgatgttggtgacctacagatggggttttggtgtggatgtcctttttgttgatg--------ctgttcctttctgtttgttagttttccttctaac----agaccactcagctgtaggtctgttggagtttgctggaggtccactccagaccctgtttgcctgggtatcacaggtggaggctgcagaacagctaatatttctgcctgatccttcctctggaagcttcatcccagaggggcacctgcctgtttgaggcatctgtcagcccctactgggaggggtttcccagtcaggcta-----------------cacttgaggaggcagtctgaccgttcttggagctcgaacgccatgctgagagaacctctgctctcttcagagctgtcagatggggacgtttacatctgcagaagctgtctgctgccttttgttctgctatgccctgcccccagaggtggaatctatagagccagtaggccttgctgagctgcggtgtgctccacccagttcatgcttcccagcagcttggtttacactgtgagctacttaagcctcagcaatggcagatgtccctctccccgtcaagctgcaatgtcacagattgatctcagactgttgtgctagcagtgagcaaagctctgtgggcataggacctgccgagccaggcataggagggtatctcctggtctgccggttgctaagaccatgggaaaagagcagtatttggtcagtagtgtaccgtttctccaggtacagtctgtcatggcttcccttggctaggaaagggaaatcccccgaccccttgtgcttcccgggtgaggtgatgccccaccctgctttggctcatcctccgtgggctgcacccactgtccaaccagtcccagtgagatgtaccaggtacctcagttggaaatgcagaaatcacctgtcatctgcgtcgatcttgctgggagctatagaccgAtgtacag--------ttatacttcagtttgttcatgcattcacctgttaatggacctttgagctgtttctacttttGTATTCCTATTCAGCCATCGTGGAAGCAACCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4741144 1134 - 13748885 aagaggtgctctg------------ttttttggaattttcagcttttctgatctggtttctctccatctttgtggttttatctacctttggtctttgatgttgatgttgatgacctacagatggggttttggtgtggatgtcctttttgttgatg--------ctattcctttctgtttgttagttttccttctaac----agactcctcagctgtaggtctgttggagtttgctggaggtccactccagaccctgtttgcctgggtatcacaggtggaggctgcagaacagctaatattgctgcctgatccttcctctggaagcttcatcccagaggggcacctgcctgtttgaggcgtctgtcagcccctactgggaggggtttcccagtcaggcta-----------------cacttgaggaggcagtctgaccgttcttggagctcaaacgccatgctgagagaacctctgctctcttcagagctgtcagatggggacgtttacatctgcagaagctgtctgctgccttttgttctgctacgccctgcccccagaggtggaatctatagaaccagtaggccttgctgagctgcggtgtgctccacccagttcatgcttcccagcagcttggtttacactgtgagctacttaagccttagcaatggcagatgtccctccccccgtcaagctgcagtgtcacagattgatctcagactgttgcactagcagtgagcaaagctctgtgggcataggacctgccgagccaggcataggagggtatctcctggtctgccggttgctaagaccatgggaaaagagcag----ctgtcagtaatgtactgtttctccaggtacagtctgtctcggcttcccttggctaggaaagggaaatcccccgaccccttgtgcttcctgggtgaggtgatgccccgccctgctttggctcatcctccgtgggctgcacccactgtccaaccagtcccaatgagatgaaccaggtacctcagttggaaatgcagaaatcacctgtcatctgcgtcgatcttgctgggagctatagaccgATATACAGATGTACAGTtatacttcaattttttcatgcattcacctgttaatggacctttgagctgtttctacttttGTATTCCTATTCAGCCATCTTGGAAGCAACCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53776408 1167 - 163208435 aagaggtactctgtttttttttttttttttttgaattttcagcttttctggtctggtttctccccatctttgtggttttatctacctttggtctttgatgttgatgttggtgacctacagatggggttttcgtgtggatgtcctttttgttgatg--------ctactcctttctgtttgttagttttccttctaac----agacccctcagctgtaggtctgttggagtttgctggaggtccactccagaccccgtttgcctgggtatcacaggcggaggctgcagaacagctaatattgctgcctgatccttcccctggaagcttcatcccagaggggcacctgcctgtttgaggtgtctgtcggcccctactgggaggtgtttcccagttaggccgcatgggggttagggacccacttgaggaggcagtctgaccattctcggagctcgaacgccgtgctgagagaacctctgctctcttcagagctgtcagacagggacgtttacgtctgcagaagctatctgctgccttttattctgctatgccctgcccccagaggtggaatctatagagtcagtagtccttgctgagctgcggtgtgctccacccagttcatgcctcccagcagcttggtttacactgtgagctactcaagcctcagcaatggcggatgtccctccccctgtcaagctgcagtgtcacaggttgatctcagattgttgcgctagcagtgagcaaggctccgtgggcatgggacctgctgagccaggcacaggagggtatctcttggtctgtcggttgctaagaccatgggaaaagagcagtatttggtccggagtatactgtttctccaggtacagtctgtcacggctgcccttggctaggaaagggaaatcccccaaccccttgtgcttcgcaggtgaggtgatgccccgccctgctttggctcaccctccatgggctgcacccaccgtccaaccagtcccagtgagatgaaccaggtacctcagttggaaatgcagaaatcacctgtcgtctgtgtcgatcttgctgggagctatagaccAATATACAGAtgtacagttatacttcaatttgttcatacattcacctgttaatggatctttgagctgtttttacttttGTATTCCTATTCGGCCATCTTGGAAGCAGCCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87803792 1111 - 180051392 aagagttgctctg------------ttttttggaattttcagcttttctgctctggtt--tccccatctttgtggtttcatctacctttggtct------ttgatgttggtgacctacagatggggttttggtgtggatgtcctttttgttgatgttgatgaaatagtcctttctgtttgttagttttccttctaacagttagaccccttagctgtaggtctgttggaatttgctagaggtccactccagaccctgtttgcctgggtatcactagcagaggctgcagaacagcaaatattgctgcctgatccttcctctggaagcttcatcccagagaagtacccacctgtttaaggtgtctgttggcccctactgggaggtgtttcccagtcaggctacacaggggtcagggatccacttgaggaggcagtctgaccgtactcagagctcaaatgctatgctgagagaaccactactttcttcagagctgtcagacagggacgt--------------------------------ttctgctatgccctgcccccagaggtggaatctatagaggcagcaggccttgctgagctatggtgtgctccacccagttcatgcttcctggcagcttggtttacagtgtgagctactcaagcctcagcaatggcggatgcccctccccctgtcaagctgcagcattgcaggttgatctcagactgttgcactagcagtaaacaacgctccatcagtgtgggacatgctgaatcaggtgcaggagagtatctcctggtctgctggttgctaagaccatggggaaagcgcagtatttggtcaggagtgtaccatttctccaggtactgtctgtcatggcttcctttggctgggaaagtgaaatcccccaacgccttgcgcttcttgggtgaggtgatgccccgccctgcttcagctcaccct----------------ccgtccaaccattcccagtgagatgaaccaggtacctcagttggaaatgcagaaatcacccatcttctgtgttgatcttgctgggagctgcagaccgAGGTACAGAtgtacagatatacttcagtttgttcatgcattcacctgttaatgaacctttgggctgtttctacttttGTATTCCTATTCAGCCACCTTGGAAGCAACCC i rheMac8.chr6 I 6 C 0 s macFas5.chr6 87908212 1111 - 181584905 aagagttgctctg------------ttttttggaattttcagcttttctgctctggtt--tccccatctttgtggtttcatctacctttggtct------ttgatgttggtgacctacagatggggttttggtgtggatgtcctttttgttgatgttgatgaaatagtcctttctgtttgttagttttccttctaacagttagaccccttagctgtaggtctgttggaatttgctagaggtccactccagaccctgtttgcctgggtatcactagcagaggctgcagaacagcaaatattgctgcctgatccttcctctggaagcttcatcccagagaagtacccacctgtttaaggtgtctgttggcccctactgggaggtgtttcccagtcaggctacacaggggtcagggacccacttgaggaggcagtctgaccgtactcagagctcaaatgctatgctgagagaaccactgctttcttcagagctgtcagacagggacgt--------------------------------ttctgctatgccctgcccccagaggtggaatctatagaggcagcaggccttgctgagctatggtgtgctccacccagttcatgcttcctggcagcttggtttacagtgtgagctactcaagcctcagcaatggcggatgcccctccccctgtcaagctgcagcattgcaggttgatctcagactgttgcactagcagtaaacaacgctccatcagtgtgggacatgctgaatcaggtgcaggagagtatctcctggtctgctggttgctaagaccatggggaaagcgcagtatttggtcaggagtgtaccatttctccaggtactgtctgtcatggcttcctttggctgggaaagtgaaatcccccaacgccttgcgcttcttgggtgaggtgatgccccgccctgcttcagctcaccct----------------ccgtccaaccattcccagtgagatgaaccaggtacctcagttggaaatgcagaaatcacccatcttctgtgttgatcttgctgggagctgcagaccgAGGTACAGAtgtacagatatacttcagtttgttcatgcattcacctgttaatgaacctttgggcagtttctacttttGTATTCCTATTCAGCCACCTTGGAAGCAACCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1131169 1111 - 8785636 aagagttgctctg------------ttttttggaattttcagcttttctgctctggtt--tccccatctttgtggtttcatctacctttggtct------ttgatgttggtgacctacagatggggttttggtgtggatgtcctttttgttgatgttgatgaaatagtcctttctgtttgttagttttccttctaacagttagaccccttagctgtaggtctgttagaatttgctagaggtccactccagaccctgtttgcctgggtatcactagcagaggctgcagaacagcaaatattgctgcctgatccttcctctggaagcttcatcccagagaagtacccacctgtttaaggtgtctgttggcccctactgggaggtgtttcccagtcaggctacacaggggtcagggacccacttgaggaggcagtctgaccgtactcagagctcaaatgctatgctgagagaaccactgctttcttcagagctgtcagacagggacgt--------------------------------ttctgctatgccctgcccccagaggtggaatctatagaggcagcaggccttgctgagctatggtgtgctccacccagttcatgcttcctggcagcttggtttacagtgtgagctactcaagcctcagcaatggtggatgcccctccccctgtcaagctgcagcattgcaggttgatctcagactgttgcactagcagtaaacaacgctccatcagtgtgggacatgctgaatcaggtgcaggagagtatctcctggtctgctggtagataagaccatggagaaagcgcagtatttggtcaggagtgtaccatttctccaggtactgtctgtcatggcttcctttggctgggaaagtgaaatcccccaacgccttgcgcttcttgggtgaggtgatgccccgccctgcttcagctcaccct----------------ccgtccaaccattcccagtgagatgaaccaggtacctcagttggaaatgcagaaatcacccatcttctgtgttgatcttgctgggagctgcagaccgAGGTACAGAtgtacagatatacttcagtttgttcatgcattcacctgttaatgaacctttgggctgtttctacttttgtattcctattCAGCCACCTTGGAAGCAACCC i macNem1.NW_012011400v1 I 6 C 0 s cerAty1.NW_012002401v1 1599339 1111 + 27333823 aagagttgctctg------------ttttttggaattttcagcttttctgctctggtt--tccccatctttgtggtttcatctacctttggtct------ttgatgttgctgacctacagatggggttttggtgtggatgtcctttttgttgatgttgatgaaatagtcctctctgtttgttagttttccttctaacagttagaccccttagctgtaggtctgttggaatttgctagaggtccactccagaccctgtttgcctgggtatcactagcagaggctgcagaacagcaaatattgctgcctgatccttcctctggaagcttcatcccagagaagtacccacctgtttaaggtgtctgttggcccctactgggaggtgtttcccagtcaggctacacaggggtcagggacccacttgaggaggcagtctgaccatactcagagctcaaatgctgtgctgggagaaccactgctttcttcagagctgtcagacagggacgt--------------------------------ttctgctatgccctgcacccagaggtggaatctatagaggcagcaggccttgctgagctatggtgtgctctacccagttcatgcttcctggcagcttggtttacagtgtgagctactcaagcctcagcaatggcggatgcccctccccctgtcaagctgcagcattgcaggttgatctcagactgttgcactagcagtaagcaaggctccatcagcgtgggacatgctgaatcaggtgcaggagagtatctcctggtctgctggttgctaagaccatggggaaagcgcagtatttggtcaggagtgtaccatttctccaggtactgtctgtcatggcttcctttggctgggaaagtgaaatcccccaatgccttgcgcttcttgggtgaggtgatgccccaccctgcttcagctcaccct----------------ccgtccaaccagtcccagtgagatgaaccaggtacctcagttggaaatgcagaaatcacccatcttctgtgttgatcttgctgggagctgcagaccAAGGTACAGAtgtacagatatacttcagtttgttcatgcattcacctgtaaatgaacctttgggctgtttctacttttgtattcctattCAGCCACCTTGGAAGCGACCC i cerAty1.NW_012002401v1 I 6 C 0 s chlSab2.chr4 1869759 1111 - 91010382 aagagttgctctg------------ttttttggaattttcagcttttctgctctggtt--tccccatctttgtggtttcatctacttttggtct------ttgatgttggtgacctacagatggggttttggtgtggatgtcctttttattgatgttgatgaaatagtcctttctgtttgttagttttccttctaacagttagacccctcagttgtaggtctgttggaatttgctagaggtccactccagaccctgtttgcctgggtatcactagcagaggctgcagaacagcaaatattgctgcctgatccttcctctggaagcttcatcccagagaagtacccacctgtttaaggtgtctgttggcccctactgggaggtgtttcccagtcaggctacacaggggtcagggacccacttgaggaggcagtctgacccttctcagagctcaaatgctgtgctgagagaaccactgctctcttcagagctgtcagacagggatgt--------------------------------ttctgctatggcctggccccagaggtggaatctatagaggcagcaggccttgctgaactatggtgtgctccacctagttcatgcttcctggcagcttggtttacagtgtgagctactcaagcctcagcaatggcggatgcccctccccctgtcaagctgcagcatcgcaggttgatctcagactgttgcactagcagtaagcaaggctccatcagcgtgggacatgctgaatcaggtgcaggagagtatctcctggtctgctggttgctaagaccatggggaaagcacagtatttggtcaggagtgtaccatttctccaggtactgtctgtcatggcttcctttggctgggaaagtgaaatcccccaaccccttgtgcttcttgggtgaggcgatgccccgccctgcttcagctcaccct----------------ctgtccaaccagtcccagtgagatgaaccaggtatctcagttggaaatgcagaaatcacccatcttctgtgttgatcttgctgggagctgcagaccgAGGTACAAAtgtacagatatacttcagtttgttcatgcattcaccagttaatgaacctttgggctgtttctacttttGTATTCCTATTCAGCCATCTTGGAAGCGCCCC i chlSab2.chr4 I 6 C 0 s manLeu1.NW_012103732v1 1980838 1108 + 5179401 aagagttgctctg------------ttttttggaattttcagcttttctgctctggtt--tccccatctttgtggtttcatctacctttggtct------ttgatgttggtgacctacagatggagttttggtgtggatgtcctttttgttgatgttgatgaaatagtcctttctgtttgttagttttccttctaacagttagaccccttagctgtaggtctgttggaatttgctagaggtccactccagaccctgtttgcctgggtatcactagcagaggctgcagaacagcaaatattgctgcctgatccttcctctggaagcttcatcccagagaagtacccacctgtttaaggtgtctgttggcccttactgggaggtgtttcccagtcaggctacacaggggtcagggacccactt---gaggcagtctgaccatactcagagctcaaatgctgtgctgcgagaaccactgctttcttcagagctgtcagacagggatgt--------------------------------ttctgctatgccctgcccccagaggtggaatctatagaggcagcaggccttgctgagctatggtgtgctccacccagttcatgcttcctggcagcttggtttacagtgtgagctactcaagcctcagcaatggcggatgcccctccccctgtcaagctgcagcattgcaggttgatctcagactgttgcactagcagtaagcaaggcttcatcagcgtgggacatgctgaatcaggtgcaggagagtatctcctggtctgctggttgctaagaccatggggaaagcgcagtatttggtcaggagtgtaacatttctccaggtactgtctgtcatggcttcctttggctgggaaagtgaaatcccccaacgtcttgcacttcttgggtgaggtgatgccccaccctgcttcagctcaccct----------------ccgtccaaccagtcccagtgagatgaaccaggtacctcagttggaaatgcagaaatcacccatcttctgtgttgatcttgctgggagctgcagaccgAGGTACAGAtgtacagatatacttcagtttgttcatgcattcacctgtaaatgaacctttggactgtttctactttCGTATTCCTATTCAGCCACCTTGGAAGCGACCC i manLeu1.NW_012103732v1 I 6 C 0 s colAng1.NW_012115488v1 7686585 1125 - 21726897 aagagttgctctg------------ttttttggaattttcagcttttctgctctggtc--tccccgtctttgtggtgtcatctacctttggtct------ttgatgttggtgacctacagatggggttttggtgtggatgtcctttttgttgatgttgatg--ctattcctttctgtttgttagttttccttctaacagttagacccctcagctgtaggtctgttggaatttgctggaggtccactccagaccctgtttgcctgggtatcaccagcagaggctgcagaacagcaaatattgctgcctgatccttcctctggaagcgtcatcccagaggagtacccacctgtttgaggtgtctatcagcccctactgggaggtgtttcccagtcaggctacacaggggtcagggacccacttgaggaggcagtctgaccgttctcagagctcaaatgctgtgctgagagaaccactgctctcttcagagctgtcagacagggacgt--------------------------------ttctgctatgccctgcccccagaggtggaatctatagaggcagcaggccttgctgagctatggtgtgctccacccagttcatgcttcctggcagcttggtttacagtgtgagctactcaagcctcagcaatggcggatgcccctccccccgtcaagctgcagcatcacaggttgatctcagactgttgcactagcagtaagcaaggctccgacggcgtcggacatgctgaatcaggcgcaggagggtatctcctggtctgctggttgctaagaccatggggaaagtgcagtatttggtcagcagtgtaccatttctccaggtactgtctgtcatggcttcctttggctgggaaagggaaatcccccaaccccttgcgcttctcgggtgaagtgatgccccgccctgcttcagctcaccctccatgggctgcactcaccatccaaccagtcccagtgaggtgaaccaggtatctcagttggaaatgcagaaatcacccatcttctgtgttgatcttgctgggagctgcagaccgAGGTACAGAtgtacagatacacttcagtttgttcatgcattcacctgttaatgaacctttgggctgtttctacttttGTATTCCTATTCAGCCACTTTGGAAGTGACCC i colAng1.NW_012115488v1 I 6 C 0 e canFam3.chr3 14288941 504 + 91889043 I e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e aotNan1.NW_018506370v1 1392550 0 - 15889662 C e cebCap1.NW_016107830v1 316450 9 - 1393929 I e saiBol1.JH378106 44951972 0 + 71252344 C e calJac3.chr2 112505121 865 + 204313951 I a score=37817.000000 s hg38.chr5_GL383530v1_alt 10363 6 + 101241 ATTACA s panTro5.chr5 20239125 6 + 181907262 ATTACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20256437 6 + 183735486 ATTACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4742278 6 - 13748885 ATTACA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53777575 6 - 163208435 ATTACG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87804903 6 - 180051392 ATTACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87909323 6 - 181584905 ATTACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1132280 6 - 8785636 ATTACA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1600450 6 + 27333823 ATTACA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1870870 6 - 91010382 ATTACA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1981946 6 + 5179401 ATTACA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7687710 6 - 21726897 ATTATA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112505986 6 + 204313951 attact i calJac3.chr2 I 865 C 0 e canFam3.chr3 14288941 504 + 91889043 I e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e aotNan1.NW_018506370v1 1392550 0 - 15889662 C e cebCap1.NW_016107830v1 316450 9 - 1393929 I e saiBol1.JH378106 44951972 0 + 71252344 C a score=106995.000000 s hg38.chr5_GL383530v1_alt 10369 11 + 101241 TTTAATAAagg s panTro5.chr5 20239131 11 + 181907262 TTTAATAAagg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20256443 11 + 183735486 TTTAATAAagg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4742284 11 - 13748885 TTTAATAAagg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53777581 11 - 163208435 TTTAATAAagg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87804909 11 - 180051392 TTTAATAAagg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87909329 11 - 181584905 TTTAATAAagg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1132286 11 - 8785636 TTTAATAAagg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1600456 11 + 27333823 TTTAATAAagg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1870876 11 - 91010382 TTTAATAAagg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1981952 11 + 5179401 TTTAATAAagg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7687716 11 - 21726897 TTTAATAAagg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112505992 11 + 204313951 tttaataaagg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44951972 11 + 71252344 tttaataaagg i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1392550 11 - 15889662 tttaataaagg i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14288941 504 + 91889043 I e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I e cebCap1.NW_016107830v1 316450 9 - 1393929 I a score=7603362.000000 s hg38.chr5_GL383530v1_alt 10380 779 + 101241 gaggcattatcc-ttaggagact-gtacgttaaaaatatcttctctctactctgtagggagatactctctctgtcttttaaggttgcactgtataaacatcctagagatgattttctagaacaccggca---------tccagttagtgtcaata-tgt-gaaaggcgaggcaccagtggagaatcgtcttcgaataCTCTCT----gtgtttcctcttacagtaaatggtatcaccattgtcttggttgcccaagacagaaagctggccatcttgtttagttctcattctttattcattcatctctttatttaacttagtcttaactttccctgcttgccacttccaatccatcaccaaattcttcccatcttaccttttt--aatatctcttggactcgttcacctttttattcagaagcaaccttggttttcagtccctgtcatctc--gagtggattactaaaatggtgtctctctctccagttttgtcttatctaacgtgttctccaactagagccagaattttcttttctcctgctttcttaaaatgtcactgattcctcattgctctcaggacaaagtctaacatccctgtaatgacatattagaccctttgtggtctggc----tcctacctatcttatttctcaacac-tacttcctcagactctatgctccattcatgctgTGGTTCCCCAGGTTCCGTGATGACTCTTTTCAGAGTGCTGAACGTC------------------CCTCTTTTTCCTCACATGTCTACCTCTTTCTCCTCTTTAAGTCTCAGCCCAAATATCACTTCTTCTAA s panTro5.chr5 20239142 801 + 181907262 gaggcattatcc-ttaggagact-gtacattaaaaatatcttctctctactctgtagggagatactctctctgtcttttaaggttgcactgtataaacatcctagagatgattttctagaacaccggca---------tccagttagtgtcaata-tgt-gaaaggcgaggcaccagtggagaattgtcttctaataCTCTCTATCTgtgtttcctcttacagtaaatggtatcaccattgtcttggttgcccaagacagaaagctggtcatcttgtttagttctcattctttattcattcatctctttatttaacttagtcttaactttccctgcttgccacttccaatccatcaccaaattcttcccatcttaccttttt--aatatctcttggactcattcacctttttattcagcagcaaccttggttttcagtccctgtcatctc--gagtggattactaaaatggtgtctctctctccagttttgtgttatctaacgtgttctccaactagagtcagaattttcttttctcctgctttcttaaaatgtcactgattcctcattgctctcaggacaaagtctaacgtccctgtaatgacatattagaccctttgtggtctggc----tcctacctatcttatttctcaacac-tacttcctcagactctatgctccattcatgctgtggttccccaggttccgtgatgactcttttcagagtgctgaacatctccctctgggatgcacttcctctttttcctcacatgtctacctctttctcctctttaagtctcagcctaaatatcacttcttctaA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20256454 801 + 183735486 gaggcattatcc-ttaggagact-gtacattaaaaatatcttctctctactctgtagggagatactctctctgtcttttaaggttgcactgtataaacatcctagagatgattttctagaacaccggca---------tccagttagtgtcaata-tgc-gaaaggcgaggcaccagtggagaattgtcttctaataCTCTCTATCTgtgtttcctcttacagtaaatggtatcaccattgtcttggttgcccaagacagaaagctggtcatcttgtttagttctcattctttattcattcatctctttatttaacttagtcttaactttccctgcttgccacttccaatccatcaccaaattcttcccatcttaccttttt--aatatctcttggactcattcacctttttattcagcagcaaccttggttttcagtccctgtcatctc--gagtggattactaaaatggtgtctctctctccagttctgtgttatctaacgtgttctccaactagagtcagaattttcttttctcctgctttcttaaaatgtcactgattcctcattgctctcaggacaaagtctaacgtccctgtaatgacatattagaccctttgtggtctggc----tcctacctatcttatttctcaacac-tacttcctcagactctatgctccattcatgctgtggttccccaggttccgtgatgactcttttcagagtgctgaacgtctccctctgggatgcacttcctctttttcctcacatgtctacctctttctcctctttaagtctcagcctaaatatcacttcttctaA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4742295 801 - 13748885 gaggcattattc-ttaggagact-gtacgttaaaaatatcttctctctactctgtagggagatactctctctgtcttttaagcttgcactgtgtaaacatcctagagatgattttctagaacaccggca---------tccagttagtgtcaata-tgc-gaaaggcgaggcaccagtggagaattgtcttctaataCTCTCTATCTgtgtttcctcttacagtaaatggtatcaccattgtcttggttgcccaagacagaaagctggtcatcttgtttagttctcattctttattcattcatctctttatttaacttagtcttaactttccctgcttgccacttccaatccatcaccaaattcttcccatcttaccttttt--agtatctcttggactcattcacctttttattcagcagcaaccttggttttcagtccctgtcatctc--gagtggattactaaaatggtgtctctctctccagttttgtcttatctaacatattctccaactagagccagaattttcttttctcctgctttcttaaaatgtcactgattccttattgctctcaggacaaagtctaacatccctgtaatgacatattagaccctttgtggtctggc----tcctacctatcttatttctcaacac-tacttcctcagactctatgctccattcatgccgtggttccccaggttccatgatgactcttttcagagtgctgaacgtctccctctgggatgcacttcctctttttcctcacatgtctacctctttctcctctttaagtctcagcctaaatatcacttcttctaA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53777592 800 - 163208435 gaggtattatcc-ttaggagact-atacattaaaaatatcttctctctactctgtagggagatactctctctgtcttttaa---tgcactgtataaacatcctagaagtgattttctagaacacaggca---------tccagttagtgccaata-tgc-agaaggtgaggcaccagtggagaattgtcttctaataCTCTTTATCTGTGTTTCCTCTTATAGTAAATGGTATCACCATTGCCTTGGTTGCCCAAGACAGAAAGCTGGTCATCTTGTTTAGTTCTCATTCTTTATTCATTCATCTCTTTATTTAACTTAGTCTTAActttccctgcttaccacttccaatccatcaccaaattcttcccatcttaccttttt--aatatctcttggactcattcacctttttattcagtggcaaccttggttttcagtccctgtcatctcttgagtggattactaaaatggtgtctctctatccagttttgtcttatctaatgtgttctccaactacagccagaattttcttttctcttgctttcttaaaatgtcactgattcctcattgctctcaggacaaagtctaacgtccctataatgacatattagaccctttgtggtctggc----tcctacctgtcttatttatcaacac-ttcttcctcagactctgtgctccattcatgctgtggttcaccaggttctgtgatgactcttttcagagtgctgaacgtctccctctgggatgcacttcctctttttcctcacatgtctacctctttctcccctttaagtctcagccaaaatatcacctcttctaA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87804920 809 - 180051392 gaggcattatct-ttaggagact-gtacattaaaaataccttctctctactctgtagggatatactct---tgtcttttaaggttgcactgtataaacatcctagaaatgatgttctagaacacaggcatcacaggcatccaattagtgccaata-tgcagaaagccgaagcaccagtggagaattgtcttctaataCTCTCTGTCTGTGTTTCTGCTTACAGTAAATGGTATTGCCATTGTCTT-GTTGCCCAAGACAGAAAGCTGGTTATTTTGTTTAGTTCTCATTCTTTGTTCATTCATCTCTTTATTTAACTTAGTCTTAACTTTGCCTCCTTAccacttccaattcatcaccaaattcttcccatcttaccttttt--aatatctctcggattcgttcacctttttatccagcagcaaccttggttttaagtccctgtcatctcttgagtggattactaaaatggtgtctgtctctccagttttgtcttatctaacatgttctccaactagagccagaattttcttttcttctgctttcttaaaatgtcactgattcctcattgctctcaggacaaagtctaaagtccctatcatgacatattagagtctttatggtctggc----tcctacctacctcatttctcaacac-ttcttcctcagactctatgctccattcctactgtggtttcccaggttccatgatgactcttttcagagtgctgaatgtctccctctgggatgcacttcctccttttcctcacatgtctaactctttctcccctttaagtcttagcctaaatatcacctcttctaA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87909340 809 - 181584905 gaggcattatct-ttaggagact-gtacattaaaaataccttctctctactctgtagggatatactct---tgtcttttaaggttgcactgtataaacatcctagaaatgatgttctagaacacaggcatcacaggcatccaattagtgccaata-tgcagaaagccgaagcaccagtggagaattgtcttctaataCTCTCTGTCTGTGTTTCTGCTTACAGTAAATGGTATCCCCATTGTCTT-GTTGCCCAAGACAGAAAGCTGGTTATTTTGTTTAGTTCTCATTCTTTGTTCATTCATCTCTTTATTTAACTTAGTCTTAACTTTGCCTCCTTAccacttccaatccatcaccaaattctttccatcttaccttttt--aatatctctcggattcgttcacctttttatccagcagcaaccttggttttaagtccctgtcatctcttgagtggattactaaaatggtgtctgtctctccagttttgtcttatctaacatgttctccaactagagccagaattttcttttcttctgctttcttaaaatgtcactgattcctcattgctctcaggacaaagtctaaagtccctatcatgacatattagagtctttatggtctggc----tcctacctacctcatttctcaacac-ttcttcctcagactctatgctccattcctactgtggtttcccaggttccatgatgactcttttcagagtgctgaatgtctccctctgggatgcacttcctccttttcctcacatgtctaactctttctcccctttaagtcttagcctaaatatcacctcttctaA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1132297 809 - 8785636 gaggcattatct-ttaggagact-gtacattaaaaataccttctctctactctgtagggatatactct---tgtcttttaaggttgcactgtataaacatcctagaaatgatgttctagaacacaggcatcacaggcatccaattagtgccaata-tgcagaaagccgaagcaccagtggagaattgtcttctaataCTCTCTGTCTGTGTTTCTGCTTACAGTAAATGGTATCGCCATTGTCTT-GTTGCCCAAGACAGAAAGCTGGTTATTTTGTTTAGTTCTCATTCTTTGTTCATTCATCTCTTTATTTAACTTAGTCTTAACTTTGCCTCCTTAccacttccaatccatcaccaaattcttcccatcttaccttttt--aatatctctcggattcgttcacctttttatccagcagcaaccttggttttaagtccctgtcatctcttgagtggattactaaaatggtgtctgtctctccagttttgtcttatctaacatgttctccaactagagccagaattttcttttcttctgctttcttaaaatgtcactgattcctcattgctctcaggacaaagtctcaagtccttatcatgacatattagagtctttatggtctgga----tcctacctacctcatttctcaacac-ttcttccttagactctatgctccattcctactgtggtttcccaggttccatgatgactcttttcagagtgctgaatgtctccctctgggatgcacttcctccttttcctcacatgtctaactctttctcccctttaagtcttagcctaaatatcacctcttctaA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1600467 806 + 27333823 gaggcattatct-ttaggagact-gtacattaaaaataccttctctctactctgtagggatatactct---tgtctttcaaggttgcactgtataaacatcctagaa---atgttctagaacacaggcatcacaggcatccaattagtgccagta-tacagaaagccaaggcaccagtggagaattgtcttctaataCTCTCTGTCTGTGTTTCTGCTTACAGTAAATGGTATCACCATTGTCTT-GTTGCCCAAGACAGAAAGCTGGTTATTTTGTTTAGTTCTCATTCTTTGTTCATTCATCTCTTTATTTAACTTAGTCTTAACTTTGCCTCCTTAccacttccaatccatcaccaaattcttcccatcttaccttttt--aatatctctcggactcgttcacctttttatccagcagcaaccttggttttaagtccctgtcgtctcttgagtggattactaaaatggtgtctgtctctccagttttgtcttatctaacatgttctccaactagagccagaattttcttttcttctgctttcttaaaatgtcactgattcctcattgctctcaggacaaagtctaaagtccctatcatgacatattagagtctttatggtctggc----tcctacctacctcatttctcaacac-ttcttcctcagactctatgctccattcctactgtggtttcccaggttccatgatgactcttttcagagtgttgaacgtctccctctgggatgcatttcctcattttcctcacatgtctacctctttctcccctttaagtcttagcctaaatatcacctcttctaA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1870887 811 - 91010382 gaggcattatct-ttaggagact-gtacattaaaaataccttctctctactctgtagggatatactct---tgtcttttaaggttgcactgtataaacatcctagaaatgatgttctagaacacaggcatcacaggcatccaattagtgccaatg-tgcagaaagccgaggcaccagtggagaattgtcttctaataCTCTCTGTCTGTGTTTCTGCTTACAGTAAATGGTATCACCATTGTCTT-GTTGCCCAAGACAGAAAGCTGGTTATTTTGTTTAGTTCTCATTCTTTGTTCATTCATCTCTTTATTTAACTTAGTCTTAActttacctcctttccacttccaatccatcaccaaatccttcccatcttacctttataaaatatctcttggactcgttcacctttttatccagcagcaaccttggttttaagtccctgtcatctcttgagtggattactaaaatggtgtctgtctgtccagttttgtcttatctaacatgttctccaactagagccaggattttcttttcttctgctttcttaaaatgtcactgattccccattgctctcaggacaaagtttaaagtccctatcatgacatattagactctttgtggtctggc----tcctacctacctcatttctcaacac-ttcttcctcagactctatgctccattcctactgtggtttcccaggttccgtgatgactcttttcagagtgctgaacatctccctctgggatgcacttcctccttttcctcacatgtctacctctttctcccctttaagtcttagcctaaatatcacctcttctaA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1981963 809 + 5179401 gaggcattatct-ttaggagact-gtacattaaaaataccttctctctactctgtagggatatactct---tgtctttgaaggttgcactgtataaacatcctagaaatgatgttctagaacacaggcatcacaggcatccaattagtgccaata-tacagaaaaccaaggcaccagtggagaattgtcttctaataCTCTCTGTCTGTGTTTCTGCTTACAGTAAATGGTATCACCATTGTCTT-GTTGCCCAAGACAGAAAGCTGGTTATTTTGTTTAGTTCTCATTCTTTGTTCATTCATCTCTTTATTTAACTTAGTCTTAACTTTGCCTCCTTAccacttccaatccatcaccaaattcttcccatcttaccttttt--aatatctctcggactcgttcacctttttatccagcagcaaccttggttttaagtccctgtcatctcttgagtggattactaaaatagtgtctgtctctccagttttgtcttatctaacatgttctccaactagagccagaattttcttttcttctgctttcttaaaatttcactgattcctcattgctctcaggacaaagtctaaagtccctatcatgacatattagagtctttatggtctggc----tcctacctacctcatttctcaacac-ttcttcctcagactctatgctccattcctactgtggtttcccaggttccatgatgactcttttcagagtgttgaatgtctccctctgggatgcacttcctccttttcctcacatgtctacctctttctctcctttaagtcttagcctaaatatcacatcttctaA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7687727 809 - 21726897 gaggcattatct-ttaggagact-gtacattaaaaatatcttctctctactctgtagagatatactct---tatcttttaaggttgcactgtataaacatcctagaaatgatgttctagaacacaggcatcacaggcgtccaattactgccaata-tgcagaaagccgaggcaccagtggagaattgtcttctaataCTCTCTGTCTGTGTTTCTGCTTACAGTAAATGATATCACCATTGTCTT-GTTGCCCAAGACAGAAAGCTAGTTATTTTGTTTAGTTCTCATTCTTTGTTCATTCATCTCTTTATTTAACTTAGTCTTAACTTTGCCTCCTTAccacttccaatccatcaccaaattcttcccatcttaccttttg--agtatctcttggactcgttcacctttttatccagcagcaaccttggttttaagtccctgtcatctcttgagtggattactaaaatggtgtctgtctctccagttttgtcttatctaacatgttctccaactacagccagaattttcttttcttctgctttcttaaaatgtcactgattcctcattgctctcaggacaaagtctaaagtccctatcatgacatattagagtctttgtgttctgac----tcctacctacctcatttctcaacac-ttcttcctcagattctatgctccattcctactgtggtttcccaggttccatgatgactcttttcagagtgctgaacgtctccctctgggatgcacttcctccttttcttcatatgtctacctctttctcccctttaagtcttagcctaaatatcacctcttctaA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112506003 796 + 204313951 gaggcattatcctttaggagact-gtacatgaaaaatatcttctctctggtctgttggaggatactgt--ctctcttttaaaattgcactgtataaacatcctagaaaggatattctagagcataggcg---------tccagttagtgccaata-tgcagaaaggtgaggcaccagtggagaattgtcttctaacaCTC--TATCTATGTTACCTCTTACAGTAAATGGTATCATCTTTGTCTTGTTGGCCTACGACAGAAAGCCGGTCATCTTGTTTAGTTCTCATTCTTTATTCATTCATCTCCTTATTTAACCTAGccttaac-ttccctccttaccacttccaatccatcaccaaattctgcccatcttgcctttgc--aatatttcttggactcattcacctctttatccagcagcaaccttggttttaagtccctgtcatctc--gagtgaattactaaaatgatg----tctctccagttttgtcctatctaatctgttctccaatcagagctagaatgttcatttcttctgctttcttaaaatgtcactgattcctcattgctctcaggacaaagtctaaagtctctatcatgacgtattagaccctctgtggtctggctccttcctacctacctcttttctcaacactttcttcctcagactctatgctccgttcataccgtggttccccacattctgtgatcactcttttcaga---ctgaacatttccctctgggatgcacttcctccttttcctcacatgtctacctctttcacccctttaagtctcaacctaaatatcatctcttctaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44951983 793 + 71252344 gaggcattatcc-ttaggagaccggtacatg-aaaatatcttctctctggtctgttggaggatacgct--ctctcttttaaaattgcactgtataaacatcctagaaaggatattctagaatataggca---------tccagttagtgtcaata-tgcagaaaggtgaggcaccagtggagaactgtcttctaacaCTC----TCTGTGTTACCTCTTTCGGTAAATGGTATCACCTTTGTCTTGTTGGCCTAAGGCAGAAAGCCAGTCATCTTGTTTAGTTCTCATTCTTTATTCATTCATCTCTTTATTTAACCTAGTCTTAAC-GTCCCTCCTTAccactcccaacccatcaccaaattctgcccatcgtgcc-ttgt--agtatttcttggactcattcacctcttcatccaggagcaaccttggttttaagtccctgtcatctcttgagtgaattactaaaatgatg----tctctccagttttgtcttatctaatctgttctccaactagagctagaattttcttttcttctgctttcttaaaatgacactgattcctcattgctctcaggacaaagtctaaagtctctctcatgacatattagaccctctgtggtctggc----ttctacctacctcttttctcaacactttcttcctcagactctatgctccgttcatactgtggtttcccacattctgtgatcactcttttcagagtgctgaacgtctccctgtgggatgcacttcctccttttcctcacgtgtctacctctttctcccctttaagactcaacctaaatatcacctcttctaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 316459 798 - 1393929 gaggcattatcc-ttaggagact-gtacatgaaaaatatcttctctctggtctgttggaggatactct--ctctcttttaaaattgcactgtataaacatcctagaaaggatatgctagaacataggca---------tcctgttagtgccaata-tgcagaaaggtgaggcaccagtggagaattgtctgctaacaCTCTCTATCTATGTTATCTCTTACAGTACATGGTATCACCTTTGTCTTTTTGGCCTAAGACAGCAAGCCGGTCATCTTGTTTAGTTCTCATTCTTTATTCATTCATCTCGTTATTTAACCTAGTcttaac-ttccctccttaccacttccaatccatcaccaaattctgcccatcatgcctctgt--aatatttcttggactcattcccctgtttatccaggagcaaccttggttttaagtccctgtcatctcttgagtgaattactaaaatgatg----tctctccagttttgtcctatctaatctgttctccaactagagctagaattttcttttcttctgctttcttaaaatgtcactgattcctcattgctctcaggacaaagtctaaagtctctatcatgacatattagaccctctgtggtctggc----tcctacctacctcttttctcgacactttcttcctcagactatatgctccgttcatactgtggttccccacgttctgtgatcactcttttcagagtgctgaacgtctcccaccgggatgcacttcctccttttcctcacatgtctacctctttctcccctttaagtctcaacctaaatatcacctcttctaa i cebCap1.NW_016107830v1 I 9 C 0 s aotNan1.NW_018506370v1 1392561 796 - 15889662 gaggcattatcc-ttaggagact-gtacatgaaaaatatcttctctctggtctgttggaggatactct--ctctcttttaaaattgcactgtataaacatcctagaaaggatattctagaacataggca---------tccagttagtgccaatattgcagaaaggtgaggcaccagtggaggactgtcttctaacaCTC--TATCTATCTTACCTCTTACAATAAATGGTACCACCTTTGTCTTGTTGGCCTAAGACAGAAAGCCGGTCATCTTGTTTAGTTCTCATTCTTTATTCATTCATCTCTTTATTTAACCTAGTCTTAAC-ttccctcattaccacttccagtccatcgccaaattctgcccatcttgcctttgt--aatatttcttggactcattcacctctttatccagcagcaaccttggttttaagtccctgtcatctcttgagtgaattactaaaatgatg----tctctccagttttgttctatctaatctgttctccaactagagctagaattttcttttcttctgctttcttaaaatgtcactgattcctcattgctctcaggacaaagtct-aagtctctatcatgacatattagaccctctgtggtctggc----tcctacctacttcttttctcaacactttcttcctcagactctatgctctgttcatactgtggttccccacattctgtgatcactcttttcagagtgctgaacgtctccctctggggtgcacttcctccttttcctcacatgtctacctctttctccccttaaagtctcaacctaaatatcacctcttctaa i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14288941 504 + 91889043 I e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I e mm10.chr13 76427229 373 + 120421639 I e otoGar3.GL873536 1268119 3622 - 29863360 I a score=1828087.000000 s hg38.chr5_GL383530v1_alt 11159 165 + 101241 CTGGACTCACCTCATTTG-TTCTCCTTCTTTCTAAAACCACAGATGTATGCCATCTATTGTTCTGGGTCTGAAAAC-------TT--ATATTTTTCCAATTTTATATTTCCCTCTTTTTTTCT-------ATTTTAAATCAGTCTCATCTTTTCTTATCATTGGGAATTTTCTGTGAATTCT s panTro5.chr5 20239943 167 + 181907262 CTGGACTCACCTCATTTG-TTCTCCTTCTTTCTAAAACCACAGATGTATGCCATCTATTGTTCTGGGTCTGAAAAC-------TTTTATATTTTTCCAATTTTATATTTCCCTCTTTTTTTCT-------ATTTTAAATCAGTCTCATCTTTTCTTATCATTGGGAATTTTCTGTGAATTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20257255 167 + 183735486 CTGGACTCACCTCATTTG-TTCTCCTTCTTTCTAAAACCACAGATGTATGCCATCTATTGTTCTGGGTCTGAAAAC-------TTTTATATTTTTCCAATTTTATATTTCCTTCTTTTTTTCT-------ATTTTAAATCAGTCTCATCTTTTCTTATCATTGGGAATTTTCTGTGAATTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4743096 166 - 13748885 CTGGACTCACCTCATTTG-TTCTCCTTCTTTCTAAAACCACAGATGTATGCC-TCTATTGTTCTGGGTCTGAAAAC-------TTTTATATTTTTCCAATTTTATATTTCCCTCTTTTTTTCT-------ATTTTAAATCAGTCTCATCTTTTCTTATCATTGGGAATTTTCTGTGAATTCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53778392 167 - 163208435 CTGGACTCACCTCATTTG-TTTTCCTTCTTTCTAAAACCACAGATGTATACCATCTATTGTTCTGGGTCTGAAAAC-------TTTTATATTTTTCCAATTTTATATTTCTCTCTTTTTTAGT-------ATTTTAAATCAGTCCCATCTTTTCTTATCGTTGGGAATTTTCTGTAAATTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87805729 167 - 180051392 CTGGGCTCACCTAATTTG-TTTTCCTTCTTTCTGAAACTACAGATGTATGCCATCTATTGTTCTGGGTCTGAAAAC-------TTTTATATTTTTCCTATTTTATATTTCTCTCTTTTTTTCT-------ATTTTAAATCAGTCTCATCTTTTCTTATCATTGGGACTTTTCTGTGAATTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87910149 167 - 181584905 CTGGGCTCACCTCATTTG-TTTTCCTTCTTTCTGAAACTACAGATGTATGCCATCTATTGTTCTGGGTCTGAAAAC-------TTTTATATTTTTCCTATTTTATATTTCTCTCTTTTTTTCT-------ATTTTAAATCAGTCTCATCTTTTCTTATCATTGGGACTTTTCTGTGAATTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1133106 167 - 8785636 CTGGGCTCACCTCATTTG-TTTTCCTTCTTTCTGAAACTACAGATGTATGCCATCTATTGTTCTGGGTCTGAAAAC-------TTTTATATTTTTCCTATTTTATATTTCTCTCTTTTTTTCT-------ATTTTAAATCAGTCTCATCTTTTCTTATCATTGGGACTTTTCTGTGAATTCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1601273 167 + 27333823 CTGGGCTCACCTCATTTG-TTTTCCTTCTGTCTGAAACTACAGATGTATGCCATCTATTGTTCTGGGTCTGAAAAC-------TTTTATATTTTTCCTATTTTATATTTCTCTCTTTTTTTCT-------ATTTTAAATCAGTCTCATCTTTTCTTATCATTGGGACTTTTCTGTGAATTCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1871698 167 - 91010382 CTGGGCTCACCTCATTTG-TTTTCCTTCTTTCTGAAACTACAGATGTATGCCATCTATTGTTCTGGGTCTGAAAAC-------TTTTATATTTTTCCTATTCTATATTTCTCTCTTTTTTTCT-------ATTTTAAATCAGTCTCATCTTTTCTTATCATTGGGACTTTTCTGTGAATTCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1982772 167 + 5179401 CTGGGCTCACCTCATTTG-TTTTCCTTCTGTCTGAAACTACAGATGTATGCCATCTATTGTTCTGGGTCTGAAAAC-------TTTTATATTTTTCCTATTTTATATTTCTCTCTTTTTTTCT-------ATTTTAAATCAGTCTCATCTTTTCTTATCATTGGGACTTTTCTGTGAATTCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7688536 167 - 21726897 CTGGACTCACCTCATTTG-TTTTCCTTCTTTCTGAAACTACAGATGTATGCCATCTATTGTTCTGGGTCTGAAAAC-------TTTTATATTTTTCCTATTTTGTATTTCTCTCTTTTTTTCT-------ATTTTAAATCAGTCTCATCTTTTCTTATCATTGCGACTTTTCTGTGAATTCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112506799 155 + 204313951 caggacttacctCATATG-TTTTTCTTCTTTCTAAAACCACAGATGCATGACATCTATTGTTCTGGGTCTGAAAAC-------TTTTATATTTTTCTAATTTTATATTTCTC--TTTTTTTCT-------ATTTTAAATCAGTCTC----------ATCATTGGGGATTTTCTGCAAAATCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44952776 156 + 71252344 caggactcacctcacATG-TTTTTCTTCTTTCTAAAACCACGGATGTATGATGTCTATTGTTCTGAGTCTGAAAAC-------ttttatatttttctaattttatatttatct-tttttttct-------attttaaatCAGTCTC----------ATCATTGGGGATTTTCTGCAAATTCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 317257 156 - 1393929 caggactcacctCATATGTTTTTTCTTCTTTCTAAAGCCACAGATGTATGACATCTATTGTTCTGGGTCTGAAAAC-------TTTTATATTTTTCTAATTTTATATTTCTC--TTTTTTTCT-------ATTTTAAATCAGCCTC----------ATCATTGGGAATTTTCTGCAAATTCC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1393357 153 - 15889662 caggactcacctCATATG-TTTTTCTTCTTTCTAAAACCACAGATGTATGACATCTATTGTTCTGGGTCTAAAAAC-------TTTTATATTTTTCTAATTTTATATTTC----TTTTTTTCT-------ATTTTAAATCAGTCTC----------ATCGTTGGGGATTTTCTGCAAATTCC i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1271741 171 - 29863360 CTGGACTCATCTTCCATA-TTTCCCTGTTTTCTAAAACCTCAGATGTCTGTCATTTATTGTGTTGGGTCTGAAAACAGTGGGTTTTTATGTTTTTCTTATTTTATAGCTAT---TCTTTCTTT-------ATTTTAAACCTGTCCCATCTTTTCTTATCACTGGGGATTTTCTGTGAATTTC i otoGar3.GL873536 I 3622 C 0 s mm10.chr13 76427602 169 + 120421639 CTGAATTCACTTTATATA-TATTCCTTCTTCCTGAA-TCAGAGATGTAGGTTGTCTACTGTCCTGAG-CTAAAAGC-------AGTATCAGCTTAC--ATCTCATATTTATAGTTATTTTCCCTTGCTTAGTATTCAGTTCACCTCATCCTTTCTCATCA-GAGATTTTTTTTATGAATGTG i mm10.chr13 I 373 C 0 s canFam3.chr3 14289445 170 + 91889043 CTGGACTAAGTTAA---G-TTTCTCTTCTTTCCAGAAGCATATTTGTATGCTACTTTTTCTTTTCGGTTCAAAAATAATGCCGTCTTATATTTTCCC-ATTTTATAGCTGTCCCTCCATTTCT-------GCTTTAAACCAGTCCCATCTTTTCTTATCATAAGAGATTTTCCAAGAGTTTC i canFam3.chr3 I 504 C 0 e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I a score=954964.000000 s hg38.chr5_GL383530v1_alt 11324 102 + 101241 ACTTATCCGTTACTTTCGTAGTTTGTCCTGATCACAT----CATC-AGAGACAGATGTCTAACAAAGCCAAATTT--CCCTTGTAT----CACAGTCTTAAGAG--GAAGTCAGG s panTro5.chr5 20240110 102 + 181907262 ACTTATCCATTACTTTCGTAGTTTGTCCTGATCACAT----CATC-AGAGATAGATGTCTAACAAAGCCAAATTT--CCCTTGTAT----CACAGTCTTAAGAG--GAAGTCAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20257422 102 + 183735486 ACTTATCCATTACTTTCGTAGTTTGTCCTGATCACAT----CATC-AGAGATAGATGTCTAACAAAGCCAAATTT--CCCTTGTAT----CACAGTCTTAAGAG--GAAGTCAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4743262 102 - 13748885 ACTTATCCGTTACTTGCGTAGTTTGTCCTGATCACAT----CATC-AGAGATAGATGTCTAACAAAGCCAAATTT--CCCTTGTAT----CACAGTCTTAAGAG--GAAGTCAGG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53778559 102 - 163208435 ACTTATCCTTTACTTTCATAGTTTGTCATGATCACAT----CATC-AGAGATGGATGTCTAACAAAGCCAAATTT--CCCTTGTAT----CACAGTCTTAAGAG--GAAGTCAGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87805896 106 - 180051392 GCTTATCCATTACTTTCATAGTTTGTCATGATCACATCATCCATC-AGAGATGAATGTCTAACAAAGCCAAATTT--CCCTTGTAT----CACAGTCTTAAAAG--GAAGTCATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87910316 106 - 181584905 GCTTATCCATTACTTTCATAGTTTGTCATGATCACATCATCCATC-AGAGATGAATGTCTAACAAAGCCAAATTT--CCCTTGTAT----CACAGTCTTAAAAG--GAAGTCATG i macFas5.chr6 C 0 C 0 s cerAty1.NW_012002401v1 1601440 106 + 27333823 GCTTATCCATTACTTTCATAGTTTGTCATGATCACATCATCCATC-AGAGATGAATGTCTAACAAAGCCAAATTT--CCCTTGTAT----CACAGTCTTAAAAG--GAAGTCATG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1871865 106 - 91010382 GCTTATCCATTACTTTCATAGTTTGTCATGATCACATCATCCATC-AGAGATGAATGTCTAACAAAGGCAAATTT--CCCTTGTAT----CACAGTCTTAAAAG--GAAGTCATG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1982939 106 + 5179401 GCTTATCCATTACTTTCATAGTTTGTCATGATCACATCATCCATC-AGAGATGAATGTCTAACAAAGCCAAATTT--CCCTTGTAT----CACAGTCTTAAAAG--GAAGTCATG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7688703 106 - 21726897 GCTTATCCATTACTTTCATAGTTTGTCATGATCACATCATCCATC-AGAGATGAATGTCTAACAAAGCCAAATTT--CCCTTGTAT----CACAGTCTTAAAAG--GAAGTCATG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112506954 93 + 204313951 ACTTATCCATTACTTTCATAGTTTGTTATGATCACAT----CATC-AAAGATGAATGCCTAACAAAGCCAAATTT--CCCTTGTAT----CACAGCCTTGAGAA----------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44952932 93 + 71252344 ACTTATCCATTACTTCCATAGTTTGTTATGATCACAT----CATC-AAAGATGAATGTCTAACAAAGCCAAATTT--CCCTTGTAT----CACAGTCTTGAGAA----------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 317413 93 - 1393929 ACTTATCCATTACTTTCATAGTTTGTTATGATCACAT----CATC-AAAGATGAATGTCTAACAAAGCCAAATTT--CCCTTGTAT----CACAGTCTTGAGAA----------- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1393510 93 - 15889662 ACTTATCCATTACTTTCATAGTTTGTTATGATCACAT----CATC-AAAGATGAATGTCTAACAAAGCCAAATTT--CCCTTGTAT----CACAGTCTTGAGAA----------- i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1271912 109 - 29863360 ATTTACCCATTACTTTCGCAATCTGTCATGACCACAT----AATCAAGAGATGAATGCCTTAAAAAGCCATATGT--CGCTTGTGTACTCAACCATCATAAGAAGGGAGGTTAAG i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76427771 91 + 120421639 ATATATTCATTACTTAGGCTGTGTTT---------------CATT-AGGGACAGATGTCTAGCAAAGCCAGATTTCCCCCTACTCT----TACAGCA--AAAAG--AAAATCAAG i mm10.chr13 C 0 C 0 s canFam3.chr3 14289615 91 + 91889043 ATTTATCTATTGCTTTCACAGTCCCTCATTACTACAT----CATCAAGAGGAACATGTTTAATAAAATGAAATTT--CCCTTGTTA----------------GG--GGAATCAGG i canFam3.chr3 C 0 C 0 e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I e macNem1.NW_012011400v1 1133273 0 - 8785636 C a score=960139.000000 s hg38.chr5_GL383530v1_alt 11426 88 + 101241 GTCCTCATGT--CATGTCTCTGTG--TCCCTCCTAGTGCTGGGATTCATCTTGCTTATGG--------ATTCACATGTCCTAAATAGTGGAAGTTCTAAT s panTro5.chr5 20240212 88 + 181907262 GTCCTCATGT--CATGTCTCTGTG--TCCCTCCTAGTGCTGGGATTCATCTTGCTTATTG--------ATTCACATGTCCTAAATAGTGGAAGTTCTAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20257524 88 + 183735486 GTCCTCATGT--CATGTCTCTGCG--TCCCTCCTAGTGCTGGGATTCATCTTGCTTATTG--------ATTCACATGTCCTAAATAGTGGAAGTTCTAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4743364 88 - 13748885 GTCCTCATGT--CATGTCTCTGTG--TCCCTCCTAGTGCTGGGATTCATCTTGCTTATTG--------ATTCACATGTCCTAAATAGTGGAAGTTCTAAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53778661 88 - 163208435 GTCCTCATGT--CATGTCTCTGTG--TCCTTCCTAGTGCTGGGATTCATCTTGCTTATTG--------ATTCACGTGTCCTAAATAGTGGAAGTTCTAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806002 88 - 180051392 GTCCTCATGT--CATGTCTCTGTG--TCCCTCCTAGTGCTGGAATTCATCTTGCTTATAG--------ATTCACGTGTCCTAAATAGTGGAAGTTCTAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87910422 88 - 181584905 GTCCTCATGT--CATGTCTCTGTG--TCCCTCCTAGTGCTGGAATTCATCTTGCTTATGG--------ATTCACGTGTCCTAAATAGTGGAAGTTCTAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1133273 88 - 8785636 GTCCTCATGT--CATGTCTCTGTG--TCCCTCCTAGTGCTGGAATTCATCTTGCTTATGG--------ATTCACGTGTCCTAAATAGTGGAAGTTCTAAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1601546 88 + 27333823 GTCCTCATGT--CATGTCTCTGTG--TCCCTCCTAGTGCTGGAATTCATCTTGCTTGTGG--------ATTCACGTGTCCTAAATAGTGGAAGTTCTAAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1871971 88 - 91010382 GTCCTCATGT--CATGTCTCTGTG--TCCCTCCTAGTGCTGGGATTCATCTTGCTTATGG--------ATTCACGTGTCCTAAATAGTGGAATTACTAAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983045 88 + 5179401 GTCCTCATGT--CATGTCTCTGTG--TCCCTCCTAGTGCTGGAATTCATCTTGCTTGTGG--------ATTCACGTGTCCTAAATAGTGGAAGTTCTAAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7688809 88 - 21726897 GTCCTTATGT--CATGTCTCTGTG--TCCCTCCTAGTGCTGGGATCCATCTTGCTTATGG--------ATTCACGTGTCCTAAATAGTGGAAGTTCTAAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507047 86 + 204313951 --TCTTATGT--CATATATCTGTG--TCCCTCCTAGAGCTGGGATTCATCTTGCTTATTG--------ATTCACATTTCCTAAAGAGTAGAAGTTCTAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953025 86 + 71252344 --TCTTATGT--CACATATCTGTG--TCCCTCCTAGAGCTGGGATTCATCTTGCTTATTG--------ATTCACATTTCCTAAAGAGTAGAAGTTCTAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 317506 86 - 1393929 --CCTTATGT--CATATATCTGTG--TCCCTCCTAGAGCTGGGATTCATCTTGCTTATTG--------ATTCACATTTCCTAAATAATAGAAGCTCTAAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1393603 78 - 15889662 --TCTTATGT--CATATATCTGTG--TCCCTCCTAGAGCTGGGATTCATCTTGCTTATTG--------ATTCACATTTCCTAAAGAGT--------TAAT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1272021 90 - 29863360 GTCTTCATGTCGCATATCTATGCA--TCCCTCCTTCTGCTGAGGTTCCCCTTGATTATTG--------ATTCAATTTTATGGGATAGTGGAAGTTCTAAT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76427862 57 + 120421639 GTCCCCATAC--TTTGTAT---------------------------TATATTTTTTGCTC--------ATTCACATATACTTAATAGAAA------TAAT i mm10.chr13 C 0 C 0 s canFam3.chr3 14289706 98 + 91889043 GTCCTCATTT--CACATATGTGTATCTCCTTCTGAGAGCTGGGATTCATCTTATTTATTGATTGATTTATTTATACATACTCAATAGCCATAGTTGtact i canFam3.chr3 C 0 I 1294 e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I a score=494029.000000 s hg38.chr5_GL383530v1_alt 11514 40 + 101241 TTTCACAGGACCTTTAGTGACT-T-TTTATGGGGGTGGCATT s panTro5.chr5 20240300 40 + 181907262 TTTCACAGGACATTTAGTGACT-T-TTTATGGGGGTGGCATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20257612 40 + 183735486 TTTCACAGGACCTTTAGTGACT-T-TTTATGGGGGTGGCATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4743452 40 - 13748885 TTTCACAGGACCTTTAGTGACT-T-TTTATGGGGGTGGCATT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53778749 40 - 163208435 TTTCACAGGACCTTTAGTGACT-T-TTTGTGGGGGTGGCATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806090 40 - 180051392 TTTCACAGGACCTTTAGTGACT-T-TTTGTGGGGGTGGCATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87910510 40 - 181584905 TTTCACAGGACCTTTAGTGACT-T-TTTGTGGGGGTGGCATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1133361 40 - 8785636 TTTCACAGGACCTTTAGTGACT-T-TTTGTGGGGGTGGCATT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1601634 40 + 27333823 TTTCACAGGACCTTTAGTGACT-T-TTTGTGGGGGTGGCATT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872059 40 - 91010382 TTTCACAGGACCTTTAGTGACT-T-TTTGTGGGGGTGGCATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983133 40 + 5179401 TTTCACAGGACCTTTAGTGACT-T-TTTGTGGGGGTGGCATT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7688897 40 - 21726897 TTTCACAGGACCTTTAGTGACT-T-TTTGTGGGGGTGGCATT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507133 40 + 204313951 TTTGACAGAACCCTTAGTGACT-T-TTTGTGGGGGTGGCATC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953111 40 + 71252344 TTTGACAGAACCCTTAGTGACT-T-TTTGTGGGGGTGACATC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 317592 40 - 1393929 TTTGACAGAACCCTTATTGACT-T-TTTGTGGGGGTGGCATC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1393681 40 - 15889662 TTTGACAGAACCCTTAGTGACT-T-TTTGTGGGGGTGGCATC i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1272111 41 - 29863360 TTTGACAGGAACTTTAAAGGGTCC-TTTGTGGGTGTGGTATT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76427919 40 + 120421639 TTTTACAGGGAATCAAAGACCT-C-CTTATGGAGATGGCTTT i mm10.chr13 C 0 I 1281 s canFam3.chr3 14291098 41 + 91889043 TTTGACAGGAGCTTCAATGACT-TCTTTATGGGAATGGCTTT i canFam3.chr3 I 1294 C 0 e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I a score=50133.000000 s hg38.chr5_GL383530v1_alt 11554 4 + 101241 TTAT s panTro5.chr5 20240340 4 + 181907262 TTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20257652 4 + 183735486 TTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4743492 4 - 13748885 TTAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53778789 4 - 163208435 TTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806130 4 - 180051392 TTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87910550 4 - 181584905 TTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1133401 4 - 8785636 TTAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1601674 4 + 27333823 TTAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872099 4 - 91010382 TTAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983173 4 + 5179401 TTAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7688937 4 - 21726897 TTAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507173 4 + 204313951 TTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953151 4 + 71252344 TTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 317632 4 - 1393929 TTAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1393721 4 - 15889662 TTAT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1272152 4 - 29863360 TTAT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14291139 4 + 91889043 TTGG i canFam3.chr3 C 0 I 7 e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I e mm10.chr13 76427959 1281 + 120421639 I a score=917689.000000 s hg38.chr5_GL383530v1_alt 11558 78 + 101241 GAGCAGATAGtttttaaaaaca-----------------------ggtttattgcagcataattatcagac----aa----tttcacatgtt--aaaagtacacagcttaa s panTro5.chr5 20240344 78 + 181907262 GAGCAGATAGtttttaaaaaca-----------------------ggtttattgcagcataattgtcagac----aa----tttcacatgtt--aaaagtacacagcttga i panTro5.chr5 C 0 C 0 s panPan2.chr5 20257656 78 + 183735486 GAGCAGATAGtttttaaaaaca-----------------------ggtttattgcagcataattgtcagac----aa----tttcacatgtt--aaaagtacacagcttga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4743496 78 - 13748885 GAGCAGATAGtttttaaaaaca-----------------------ggtttattgcagcataattatcagac----aa----tttcacatgtt--aaaagtacacagcttgt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53778793 78 - 163208435 GAGCAGATAGtttttaaaaaca-----------------------agtttattgcagcataattatcacac----aa----tttcacatgtt--aaaagtacacagcttga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806134 78 - 180051392 GAGCAGATAGtttttaaaaaca-----------------------ggtttattgcagcataattatcacac----aa----tttcacatatt--aaaactacacagcttga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87910554 78 - 181584905 GAGCAGATAGtttttaaaaaca-----------------------ggtttattgcagcataattatcacac----aa----tttcacatatt--aaaactacacagcttga i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1133405 78 - 8785636 GAGCAGATAGtttttaaaaaca-----------------------ggtttattgcagcataattatcacac----aa----tttcacatatt--aaaactacacagcttga i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1601678 78 + 27333823 GAGCAGATAGtttttaaaaaca-----------------------ggtttattgcagcgtaattatcacac----aa----tttcacatatt--aaaactacacagcttga i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872103 78 - 91010382 GAGCAGATAGtttttaaaaaca-----------------------ggtttattgcagcataattatcacac----aa----tttcacatatt--aaaactacacagcttga i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983177 78 + 5179401 GAGCAGATCGtttttaaaaaca-----------------------ggtttattgcagcgtaattatcacac----aa----tttcacatatt--aaaactacacagcttga i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7688941 78 - 21726897 GAGCAGATAGtttttaaaaaca-----------------------ggtttattgcagcataattatcacac----aa----tttcgcatatt--aaaactacacagcttga i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507177 78 + 204313951 GAGCAGATCAtttttaaagata-----------------------ggtttattgcagcataattatcacac----aa----cttcacatgtt--aaaagtatacagcttga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953155 78 + 71252344 GAGCAGATCAtttttaaaaata-----------------------ggtttattgcagcataattaccacac----aa----cttcacatgtt--aaaagtatacagcttga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 317636 78 - 1393929 GAGCAGATCAtttttaaaaata-----------------------ggtttattgcagcataattatcacac----aa----cttcatatgtt--aaaagtatacagcttga i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1393725 78 - 15889662 GAGCAGCTCAtttttaaaaata-----------------------ggtttattgcagcataattatcacac----aa----cttcacatgat--aaaagtatacagcttga i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1272156 81 - 29863360 AAGCAGAAAGTTTTATTGAACA-----------------------AAATTGATGCAGCATAATTATCACACAATGAA----TTTTATATGTT---AAAGTGTACAGTTTGG i otoGar3.GL873536 C 0 I 289 s mm10.chr13 43992554 82 - 120421639 GAGTAGATAG-TTTGAAAAAGA-----------------------AAACTAGTGCAACattattgtcacac----gataactttcatttcttttaaaactgtgcagctgg- i mm10.chr13 n 1281 C 0 s canFam3.chr3 14291150 105 + 91889043 TAACAGATAGTTTTttgcagcataattgcaacataattgcagcataatttattgcagcataattgtcatataataaa----tttcacatgtt--aaaagaatacagcttga i canFam3.chr3 I 7 C 0 e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I a score=1183783.000000 s hg38.chr5_GL383530v1_alt 11636 111 + 101241 tgaattgtgac--gtgtacatccatgtaaa--------atc--------atcaccac-atcaagataacaaacattttgatggctctagaaaat---ttccttgtgctcccctttaatctctctctgccttca s panTro5.chr5 20240422 111 + 181907262 tgaattgtgac--gtgtacatccatgtaaa--------atc--------atcaccac-gtcaagataacaaacatttcgatggctctagaaaat---ttccttgtgctcccctttaatctctccctgccttca i panTro5.chr5 C 0 C 0 s panPan2.chr5 20257734 111 + 183735486 tgaattgtgac--gtgtacatccatgtaaa--------atc--------atcaccac-gtcaagataacaaacatttcgatggctctagaaaat---ttccttgtgctcccctttaatctctccctgccttca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4743574 111 - 13748885 tgaattgtgac--gtgtacatccatgtaaa--------atc--------atcaccac-atcaagataacaaacatttcgatggctctagaaaat---ttccttgtgttcccctttaatctctccctgccttca i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53778871 113 - 163208435 tgaattgtgacatgtgtacatccatgtaaa--------atc--------atcaccac-atcaagataataaacatttcaatggctctggaaaat---ttccttgtgctcccctttaatctctccctgccttca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806212 113 - 180051392 tgaattgtaaaatgtgtacatccatgtgaa--------atc--------atcactac-atcaagataacaaacatttcaatggctctagaaaat---ttccttgtgcttccctttaatccttccctcccttca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87910632 113 - 181584905 tgaattgtgaaatgtgtacatccatgtgaa--------atc--------atcactac-atcaagataacaaacatttcaatggctctagaaaat---ttccttgtgcttccctttaatccttccctcccttca i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1133483 113 - 8785636 tgaattgtgaaatgtgtacatccatgtgaa--------atc--------atcactac-atcaagataacaaacatttcaatggctctagaaaat---ttccttgtgcttccctttaatccttccctcccttca i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1601756 113 + 27333823 tgaattgtgaaatgtgtacatccatgtgaa--------atc--------atcactac-atcaagataacaaacatttcaatggctctagaaaat---ttccttgtgcttccctttaatccttccctcccttca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872181 113 - 91010382 tgaattgtgaaatgtgtacatccatgtgaa--------atc--------accactac-atcaagataacaaacatttcaatggctctagaaaat---ttccttgtgcttccctttaatccttccctcccttca i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983255 113 + 5179401 tgaattgtgaaatgtgtacatccatgtgaa--------atc--------atcactac-atcaagataacaaacatttcaatggctctagaaaat---ttccttgtgcttccctttaatccttccctcccttca i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689019 93 - 21726897 tgaattgtgaaatgtgtacatccatgtgaa--------atc--------atc---ac-atcaagataacaaacatttcaatggctctagaaaat---ttccttgtgct-----------------tcccttca i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507255 112 + 204313951 tgaattttgaaatatgtacatccatgtaaa--------atc--------attatcac-atcaagataacaaacatttcagtggctccagaaagt---tttcttgtgct-ctctttattccctccctcccttca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953233 112 + 71252344 tgaattgtgaaatacgtacctccatgtaaa--------atc--------attatcac-atcaagataacaaacatttcagtggctccagaaagt---ttccttgtgct-ctctttaatccctcccttccttca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 317714 112 - 1393929 tgaattgtgaaatatgtacatccatgtaaa--------atc--------attatcac-atcaagataacaaacatttcagtggctccagaaagt---ttccttgtgct-ctcttcaatccctcccttccttca i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1393803 112 - 15889662 tgaattgtgaaatatgtacatccatgtaaa--------atc--------attatcac-atcaagataacaaacatttcagtggctccagaaagt---ttccttgtgct-ctttttaatccctcccttccttca i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1272526 116 - 29863360 TAAGTTTTGGAAGGTGTACATCTCTGTAAAAGATAGATATCTGTAAAAGATAATCAT-GGcaatataagagacatttcaatgactccagaaag----ttccttgtgctcttttttagttcc------------ i otoGar3.GL873536 I 289 C 0 s mm10.chr13 43992636 109 - 120421639 tgggcttcaaa--cagtacatccctgcaaa--------gcc--------atccatcc-accaaaacaa-aaattcttcagtggctccagcaatt---tcctttgt-cgccattttgttctctcaccagcccca i mm10.chr13 C 0 C 0 s canFam3.chr3 14291255 116 + 91889043 tgagttttgaaatatgtata-cattgtaaa--------atc--------ttcattgtaatcaagataaaaaacatttctatggaccctgaacatgaatcccttatgccactttttaatctttcctttcctcca i canFam3.chr3 C 0 C 0 e micMur3.chr12 84807176 508 + 108143057 I e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I a score=1557789.000000 s hg38.chr5_GL383530v1_alt 11747 125 + 101241 tccctttccctaggctaccactgatctgacttatgtcacc-tagatttaattttcaattcctagaattttatataagtgagatgaaaaagtatacgtcctttttatt-a---------------------------------------------------------------------ggaagtttggatttttat s panTro5.chr5 20240533 125 + 181907262 tccctttccctaggctaccactgatctgacttatgtcacc-tagatttaatttccaattcctagaattttatataagtgagatgaaaaagtatacgtcctctttatt-a---------------------------------------------------------------------ggaagtttggatttttat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20257845 125 + 183735486 tccctttccctaggctaccactgatctgacttatgtcacc-tagatttaattttcaattcctagaattttatataagtgagatgaaaaagtatacgtcctttttatt-a---------------------------------------------------------------------ggaagtttggatttttat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4743685 125 - 13748885 tccctttccctaggctaccactgatctgacttatgtcacc-tagatttaattttcaattcctagaattttatataagtgagatgaaaaagtatacgtcctttttatt-a---------------------------------------------------------------------ggaagtttggatttttat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53778984 125 - 163208435 tccctttccctaggctaccgctgatctgacttaggtcacc-tagatttaattttcaattcctagaattttatataagtaagatgaaaaagtatacatcctttttatt-g---------------------------------------------------------------------agaagtctggatttttat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806325 125 - 180051392 tccctttccctgtgctaccactgatctgacttatgtcacc-tagatttagttttcaatttctagaattttatataagtgagatgaaaaagtatacatcctttttatt-a---------------------------------------------------------------------ggaagtctggatttttat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87910745 125 - 181584905 tccctttccctgtgctaccactgatctgacttatgtcacc-tagatttagttttcaatttctagaattttatataagtgagatgaaaaagtatacatcctttttatt-a---------------------------------------------------------------------ggaagtctggatttttat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1133596 125 - 8785636 tccctttccctgtgctaccactgatctgacttatgtcacc-tagatttagttttcaatttctagaattttatataagtgagatgaaaaagtatacatcctttttatt-a---------------------------------------------------------------------ggaagtctggatttttat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1601869 125 + 27333823 tccctttccctgtgctaccacttatctgacttatgtcacc-tagatttagttttcaatttctagaattttatataagtgagatgaaaaagtatacatcctttttatt-a---------------------------------------------------------------------ggaagtctggatttttat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872294 125 - 91010382 tccctttccctgtgctaccactgatctgacttatgtcacc-tagatttagttttcaatttctagaattttatataagtgagatgaaaaagtatacatcctttttatt-a---------------------------------------------------------------------ggaagtctggatttttat i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983368 125 + 5179401 tccctttccctgtgctaccactgatctgacttatgtcacc-tagatttagttttcaatttctagaattttatataagtgagatgaaaaagtatacatcctttttatt-a---------------------------------------------------------------------ggaagtctggatttttat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689112 125 - 21726897 tccctttccctgtgctaccactgatctgacttatgtcacc-tagatttagttttcaatttctagaattttatgtaagtgagatgaaaaagtatacatcttttttatt-a---------------------------------------------------------------------ggaagtctggatttttat i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507367 125 + 204313951 tccccttccttaggctaccactgatctgacttatgtcacc-tagatttaattttcattttctagaatttcaaataagtgagatgataaagtatacataatttttatt-a---------------------------------------------------------------------ggaagtctggattttttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953345 125 + 71252344 tccccttccttaggctaccactgatctgacttatgtcacc-tagatttaattttcattttctagaatttcatataagtgagatgctaaagtttacatcatttttatt-a---------------------------------------------------------------------gaaagcctggattttttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 317826 125 - 1393929 tccccttccttaggctaccactgatctgacttatgtcacc-tagatttaatttgcattttctagaatttcatataagtgagatgataaagtatacatcatttttatt-a---------------------------------------------------------------------gaaagtctggattttttt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1393915 124 - 15889662 tccccttccttaggctaccactgatctgactta-gtcacc-tagatttaattttcattttctagaatttcatataagtgagatgataaagtatacatcatttttatt-a---------------------------------------------------------------------ggaagtctggattttttt i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84807684 121 + 108143057 tcccctttcctaagctgccattgatttgatttatgtcatc-tagatttaattttcatattctagaattttatataagtgagataatgaaata----ttctttttatt-a---------------------------------------------------------------------gagcatctggattttgtc i micMur3.chr12 I 508 C 0 s otoGar3.GL873536 1272642 120 - 29863360 --cccctttctaagctgccactgatttgaatcatgtcatc-tagatttaattttcattttctataattttatatgaatgagatcatgaagta----ttatttttattaa---------------------------------------------------------------------gggggtctggattgtttt i otoGar3.GL873536 C 0 I 1 s mm10.chr13 43992745 184 - 120421639 gctccttccctga------actgatctg--ttttgttaccactgatttaatttctttttgcaag--ttttatatatg-aagatcatataTATAACATACATTTTATt-acatataacacattacattacatatattatagagtatgtttatacataatatatatactatatatataATGGGAGTATCTATATTTTT i mm10.chr13 C 0 I 1 s canFam3.chr3 14291371 120 + 91889043 tccccttgcctaggctaccgctgatctgattaatgtaattatagctttaacttgcattttctagaattttatgtaagggagatcctatactatgca------ttttg-a---------------------------------------------------------------------agaggcctggattttttt i canFam3.chr3 C 0 C 0 e proCoq1.NW_012147189v1 550810 1165 - 10520994 M e dasNov3.JH570378 1201674 6342 - 11655695 I a score=943885.000000 s hg38.chr5_GL383530v1_alt 11872 73 + 101241 cactcagtgtaataattttaagatttattcatggcat--------ttaatagttcattc-ttttttcttgctgagtagtatt s panTro5.chr5 20240658 73 + 181907262 cactcagtgtaataattttaagatttattcacggcat--------ttaatagttcattc-ttttttcttgctgagtagtatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20257970 73 + 183735486 cactcagtgtaataattttaagatttattcacggcat--------ttaatagttcattc-ttttttcttgctgagtagtatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4743810 73 - 13748885 cactcagtgtaataattttaagatttattcatggcat--------ttaatagttcattc-ttttttcttgctgagtagtatt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53779109 73 - 163208435 cactcagtgtaataattttaagatttattcatggcat--------ttaacagtttattc-ttttttcttgctgagtagtatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806450 73 - 180051392 cactcagtgtaataattttaagatttattcatggcat--------ttaatagttcatta-ttttttcttgctgagtagtatt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87910870 73 - 181584905 cactcagtgtaataattttaagatttattcatggcat--------ttaatagttcatta-ttttttcttgctgagtagtatt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1133721 73 - 8785636 cactcagtgtaataattttaagatttattcatggcat--------ttaatagttcatta-ttttttcttgctgagtagtatt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1601994 73 + 27333823 cactcagtgtaataattttaagatttattcatggcat--------ttaatagttcatta-ttttttcttgctgagtagtatt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872419 73 - 91010382 cactcagtgtaataattttaagatttattcatggcat--------ttaatagtttgtta-ttttttcttgctgagtagtatt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983493 73 + 5179401 cactcagtgtaataattttaagatttattcatggcat--------ttaatcgttcatta-ttttttcttgctgagtagtatt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689237 74 - 21726897 cactcagcataataattttaagatttattcatggcat--------ttaatagttcattatttttttcttgctgagtagtatt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507492 70 + 204313951 tactcaatgtaataatttttagatttattcatggcat--------ttaataggtcattc-ctttttcttgttg---agtatt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953470 70 + 71252344 aactcaatgtaataatttttagatttattaatggcat--------ttcagaggtcattc-ctttttcttgttg---agtatt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 317951 70 - 1393929 cactcaatataataatttttagatttattcatggcat--------ttaataggtcattc-ctttttcttgctg---agtatt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1394039 70 - 15889662 cactcaatgtaataatttttagatttattcatggcat--------ttaataggtcattc-ctttttcttattg---agtatt i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84807805 69 + 108143057 cactcagtataatgattttgagatttattcttggta---------ttaatagtttattc-ctttttattgctg---agtgtt i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 552006 72 - 10520994 cactcagtataatgattttgagatttattcatggta---------ctaatagttcattc-ctttttattgctgagtagtgtt i proCoq1.NW_012147189v1 M 1165 C 0 s otoGar3.GL873536 1272763 72 - 29863360 cacccagcataatgattttgagacttattcatggta---------ttaatagatccttc-ctttttattgctgagtagcatt i otoGar3.GL873536 I 1 C 0 s mm10.chr13 43992930 60 - 120421639 CAGTGACTGAAATGATTTAGAGATTCATTAAAGA---------------------ATTA-ATTTGTATTCCTGAGCAGTTTT i mm10.chr13 I 1 C 0 s canFam3.chr3 14291491 69 + 91889043 gactcagt---ataattctgagatctattaatattgtttcaggtattagtagttaattc-tttgttattattg--------- i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 1201674 6342 - 11655695 I a score=2146767.000000 s hg38.chr5_GL383530v1_alt 11945 139 + 101241 ccaacgtacagatatacttcaatttgtttatgcattcacctgttaatggacctttgggctgtttctacttttatgttattacaaataaggcCAGAAATATAAAATTTATTATTACT-TCCAATAGAATATTCTCTTATTG s panTro5.chr5 20240731 139 + 181907262 ccaacgtacagatatacttcaatttgtttatgcattcacctgttaatggacctttgggctgtttctacttttatgttattacaattaaggcCAGAAATATTAAATTTATTATTACT-TCCAATAGAATATTCTCTTATTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20258043 139 + 183735486 ccaatgtacagatatacttcaatttgtttatgcattcacctgttaatggacctttgggctgtttctacttttatgttattacaattaaggcCAGAAATATTAAATTTATTGTTACT-TCCAATAGAATATTCTCTTATTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4743883 139 - 13748885 ccaacgtacagatatacttcaatttgtttatgcattcacctgttaatggacctttgggctgtttctacttttatgttattacaaataaggcCAGAAATATAAAATTTATTATTACT-TCCAATAGAATATTCTCTTATTG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53779182 139 - 163208435 ccaacgtacagatatacttcaatttgtttatacattcacctgttaatggacctttgggctgtttctacttttatgttattacaaataaggcCAGAAATATAAAATTTATTATTACT-TCCAATAGAATATTCTCTTTTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806523 139 - 180051392 ccagtgtacagatatacttcaatttgtttatgcattcacctgttaattgacctttgggctatttctacttttatgttgttacaaataaggcCAGAAATATGAAATTTATTATTACT-TCCAGTAGAACATTCTCTTGTTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87910943 139 - 181584905 ccagtgtacagatatacttcaatttgtttatgcattcacctgttaattgacctttgggctatttctacttttatgttgttacaaataaggcCAGAAATATGAAATTTATTATTACT-TCCAGTAGAACATTCTCTTGTTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1133794 139 - 8785636 ccagtgtacagatatacttcaatttgtttatgcattcacctgttaattgacctttgggctatttctacttttatgttgttacaaataaggcCAGAAATATGAAATTTATTATTACT-TCCAGTAGAACATTCTCTTGTTG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1602067 139 + 27333823 ccagtgtacagatatacttcaatttgtttatacattcacctgttaattgacctttggactatttctacttttatgttgttacaaataaggcCAGAAATATGAAATTTATTATTACT-TCCAGTAGAACATTCTCTTGTTG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872492 139 - 91010382 ccagtgtacagatatacttgaatttgtttatgcattcacctgttaattgacctttgggctatttctacttttatgttgttacaaataaggcCAGAAATATGAAATTTATTATTACT-TCCCGTAGAACATTCTCTTGTTG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983566 139 + 5179401 ccagtgtacagatatacttcaatttgtttatgcattcacctgttaattgacctttggactatttctacttttatgttgttacaaataaggcCAGAAATGTGAAATTTATTATTACT-TCCAGTAGAACATTCTCTTGTTG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689311 139 - 21726897 ccagtgtaaagatatacttcaatttgtttatgcattcacctgttaattgacctttgggctgtttctacttttacattattacaaataaggcCAGAAATATAAAATTTATTATTACT-TCCAATAGAACATTCTCTTGTTG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507562 139 + 204313951 ccaatagacagatatacttcaatttgttcatgcattcacctgttaatggacctttgggctgtttctacttttgtgctattacaaaCCAGGCCAAAAGTACAAAATCTATTATTACT-TCCAATAGAATATTCTCTTATTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953540 139 + 71252344 ccaatataaagatatacttcaatttgttcatgcattcacctgttaatggacctttgggctgtttctacttttgtgctattgcgaacaatgcCAGAAATACAAAATCTATTATTACT-TCCAATAGAATATTCTCTTGTTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 318021 139 - 1393929 ccaatatacagatatacttcaatttgttcatgcattcacctgttaatggacctttgggctgtttctacttttgtgctattacaaacaaggcCAGAAATACAAAATCTATTATTACT-TCCAGTAGAATGTTCTCTTATTG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1394109 139 - 15889662 ccaatatacagatatacttcaatttgttcatgcgttcacctattaatggacctttgggctgtttctacttttgtgctattacaaacaaggcCAGAAATACAAAATATATTATTACT-TCCGATAGAATATTCTCTTATTG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84807874 139 + 108143057 ccattgtatggatatacttcaatttgttcatccatttatctgttaatgaacatttgggtggtttctacttttatgctatcacaaataaggcCAGAAATATAAAATTTATTGCTGCT-TCCATTAAAATATTCCCTTATGA i micMur3.chr12 C 0 I 41 s proCoq1.NW_012147189v1 552078 139 - 10520994 ccattgtatggatatacttcaatttgttcatccacttacctgttaatgaacatttgggttgtttccacttttatgctatcacaaataaggcCAGAAATATAAAATTTATTACTGCT-TCCATTAAAACATTCCCTTATGA i proCoq1.NW_012147189v1 C 0 I 41 s otoGar3.GL873536 1272835 139 - 29863360 ctattgcatagaaatacttcaatttgttcttccacttacctcttagggaacatttgggttgtttcaccttttgtgctattacaaataaggcCAGAAATGTAAAATTCATTACTGCT-TCCGTTAAAATATTCTCTTTTTG i otoGar3.GL873536 C 0 I 1 s mm10.chr13 43992990 131 - 120421639 CT--------GTTATACTTCAATTCACTCATAGATTTATCTCATAGTGGGTG-CTGGGTATTTTTAACTTTTATGTTATTATGAACAGGACCAGGATTATAAAGCTTATTCCTTCTAGttattttattattttattattC i mm10.chr13 C 0 I 6 s canFam3.chr3 14291560 134 + 91889043 --attgtatggatctactttactttgt---catgtccatctgtcagtgaacatttgggttatttccactttgaggttattacaaataaggctAGAAATGTAAAATGTATTATTGCT-TCCAGTAGAAGAGTATATAATTG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1208016 134 - 11655695 ccattttatggatat-----aatttgtttgcccattcatctgttgatggacatttgggtagttaccggttttgcactattacaaataaggctAGGGACTTAACATTTATTACTTCT-TCCACTGGAATATTCTCTTACTA i dasNov3.JH570378 I 6342 C 0 a score=470425.000000 s hg38.chr5_GL383530v1_alt 12084 42 + 101241 CATCTCACAATTTTGTATTTGAG-GGCTCTTGTTCAAAAAGTG s panTro5.chr5 20240870 42 + 181907262 CATCTCACAATTTTGTATTTGAG-GGCTCTTGTTCAAAAAGTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20258182 42 + 183735486 CATCTCACAATTTTGTATTTGAG-GGCTCTTGTTCAAAAAGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4744022 42 - 13748885 CATCTCACAATTTTGTATTTGAG-GGCTCTTGTTCAAAAAGTG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53779321 42 - 163208435 CATCTCACAATTTTGTATTTGAG-GGCTCTTGTTCAAAAAGTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806662 42 - 180051392 CATCTCACAATTTTGTAATTGAG-GGCTCTTATTCAAAAAGTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87911082 42 - 181584905 CATCTCACAATTTTGTAATTGAG-GGCTCTTATTCAAAAAGTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1133933 42 - 8785636 CATCTCACAATTTTGTAATTGAG-GGCTCTTATTCAAAAAGTG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1602206 42 + 27333823 CATCTCACAATTTTGTAATTGAG-GGCTCTTATTCAAAAAGTG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872631 42 - 91010382 CATCTCACAATTTTGTAATTGAG-GGCTCTTATTCAAAAAGTG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983705 42 + 5179401 CATCTCACAATTTTGTAATTGAG-GGCTCTTATTCAAAAAGTG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689450 42 - 21726897 CATCTCACAATTTTGTAATTGAG-GGCTCTTATTCAAAAAGTG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507701 42 + 204313951 CATCTCTCAATTTCATAATTGAG-GGCTTTTATTCAAACAGTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953679 42 + 71252344 CATCTCACAATTTCATAACTGAG-GGCTTTTATTCAAACAGTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 318160 42 - 1393929 CATCTCACAATTTTGTAATTGAG-GGCTTTTATTCAAACAGTG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1394248 42 - 15889662 CATCTTGCAATTTCATAATTGAG-GGCTTTTATTCAAACAGTG i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1272975 37 - 29863360 CATCTTACAATTTAGTAATTTAG-GGAT-TTGTTCAGAA---- i otoGar3.GL873536 I 1 C 0 s mm10.chr13 43993127 43 - 120421639 CTTCTCATAATTTCGTAATTTAGAGACTCTTGCTAAAACAGCA i mm10.chr13 I 6 C 0 s canFam3.chr3 14291694 38 + 91889043 CTTCTCCCTATATAATA----GG-GACTCTTATTTAAAAAAAA i canFam3.chr3 C 0 I 3 s dasNov3.JH570378 1208150 19 - 11655695 CCTCCCATAATTTAGTATT------------------------ i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84808013 41 + 108143057 I e proCoq1.NW_012147189v1 552217 41 - 10520994 I a score=53403.000000 s hg38.chr5_GL383530v1_alt 12126 7 + 101241 ACCTTTA s panTro5.chr5 20240912 7 + 181907262 ACCTTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20258224 7 + 183735486 ACCTTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4744064 7 - 13748885 ACCTTTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53779363 7 - 163208435 ACCTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806704 7 - 180051392 GCCTTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87911124 7 - 181584905 GCCTTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1133975 7 - 8785636 GCCTTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1602248 7 + 27333823 GCCTTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872673 7 - 91010382 GCCTTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983747 7 + 5179401 GCCTTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689492 7 - 21726897 GCCTTTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507743 6 + 204313951 ACCTTT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953721 6 + 71252344 ACCTTT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 318202 6 - 1393929 ACCTTT- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1394290 6 - 15889662 ATCTTT- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84808054 7 + 108143057 AGCTTTC i micMur3.chr12 I 41 C 0 s proCoq1.NW_012147189v1 552258 7 - 10520994 AGCTTTC i proCoq1.NW_012147189v1 I 41 C 0 s mm10.chr13 43993170 6 - 120421639 -GCTTTT i mm10.chr13 C 0 C 0 s canFam3.chr3 14291735 7 + 91889043 GCtttta i canFam3.chr3 I 3 I 1041 e dasNov3.JH570378 1208169 0 - 11655695 C e otoGar3.GL873536 1273012 0 - 29863360 C a score=11871.000000 s hg38.chr5_GL383530v1_alt 12133 1 + 101241 A s panTro5.chr5 20240919 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 20258231 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4744071 1 - 13748885 A i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53779370 1 - 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806711 1 - 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87911131 1 - 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1133982 1 - 8785636 A i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1602255 1 + 27333823 A i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872680 1 - 91010382 A i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983754 1 + 5179401 A i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689499 1 - 21726897 A i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507749 1 + 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953727 1 + 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 318208 1 - 1393929 A i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1394296 1 - 15889662 A i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84808061 1 + 108143057 A i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 552265 1 - 10520994 A i proCoq1.NW_012147189v1 C 0 C 0 s mm10.chr13 43993176 1 - 120421639 C i mm10.chr13 C 0 C 0 e canFam3.chr3 14291742 1041 + 91889043 I e dasNov3.JH570378 1208169 0 - 11655695 C e otoGar3.GL873536 1273012 0 - 29863360 C a score=524476.000000 s hg38.chr5_GL383530v1_alt 12134 36 + 101241 AAAGATGCCAACCATTAGAAAATTTTCAGAATCTCA s panTro5.chr5 20240920 36 + 181907262 AAAGATGCCAACCATTAGAAAATTTTCAGAATCTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20258232 36 + 183735486 AAAGATGCCAACCATTAGAAAATTTTCAGAATCTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4744072 36 - 13748885 AAAGATGCCAACCATTAGAAAATTTTCAGAATCTCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53779371 36 - 163208435 AAAGATGCAAACCATTAGAAAATTTTCAGAATCTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806712 36 - 180051392 AAAGATGCCAACGATTAGAAAACTTTCAGAATCTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87911132 36 - 181584905 AAAGATGTCAACGATTAGAAAACTTTCAGAATCTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1133983 36 - 8785636 AAAGATGCCAACGATTAGAAAACTTTCAGAATCTCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1602256 36 + 27333823 AAAGATGCCAACGATTAGAAAACTTTCAGAATCTCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872681 36 - 91010382 AAAGATGCCAATGATTAGAAAACTTTCAGAATCTCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983755 36 + 5179401 AAAGATGCCAACGATCAGAAAACTTTCAGAATCTCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689500 36 - 21726897 AAAGATGCCAAAGATTAGAAAACTTTCAGAATCTCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507750 36 + 204313951 AAAGATGCTAACCATTAGAAAATGTTCAGAATCTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953728 36 + 71252344 AAAGATGCTAACTGTTAGAAAATGTTCAGAATCTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 318209 36 - 1393929 AAAGATGCTAACCATTAGAAAATGTTCAGAATCTCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1394297 36 - 15889662 AAAGATGCTAACCATTAGAAAATGTTCAGAATCTCA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84808062 36 + 108143057 AAAGATGTCAACCATTAGCACATTTTCAGAATCCCA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 552266 36 - 10520994 AAAGATGTCAACCATTAGCACATTTTCAGAATCCTA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1273012 5 - 29863360 -------------------------------TCCCA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 43993177 36 - 120421639 AAAGATGCTAACCACTAGAAAACTCTCAGAAACCTA i mm10.chr13 C 0 n 0 s canFam3.chr3 14292783 36 + 91889043 AAAGATGCCAATCATTAGAAAATTTTCAGAATCCCA i canFam3.chr3 I 1041 C 0 s dasNov3.JH570378 1208169 20 - 11655695 ----------------AGAATGTTTCCAGAATCTCA i dasNov3.JH570378 C 0 I 4 a score=769349.000000 s hg38.chr5_GL383530v1_alt 12170 51 + 101241 A----ATTTCCAAATGACTGAGTTTGGATAATAGTTTTCC---------------ACTTTGTATTTTTAT s panTro5.chr5 20240956 55 + 181907262 ATTAAATTTCCAAATGACTGAGTTTGGATAATAGTTTTCC---------------GCTTTGTATTTTTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20258268 55 + 183735486 ATTAAATTTCCAAATGACTGAGTTTGGATAATAGTTTTCC---------------GCTTTGTATTTTTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4744108 55 - 13748885 ATTAAATTTCCAAATGACTGAGTTTGGATAATAGTTTTCC---------------GCTTTGTATTTTTAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53779407 55 - 163208435 ATTAAATTTCCAAATGACTGAGTTTGGATAATAGTTTTCT---------------GCTTTGTGTTTTTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806748 55 - 180051392 ATTAAATTTCCAAATGACTGAGTTTGGATAATAGTTTTCC---------------TCTTTGTATTTTTAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87911168 55 - 181584905 ATTAAATTTCCAAATGACTGAGTTTGGATAATAGTTTTCC---------------TCTTTGTATTTTTAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1134019 55 - 8785636 ATTAAATTTCCAAATGACTGAGTTTGGATAATAGTTTTCC---------------TCTTTGTATTTTTAC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1602292 55 + 27333823 ATTAAATTTCCAAATGACTGAGTTTGGATAATAGTTTTCC---------------TCTTTGTATTTTTAC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872717 55 - 91010382 ATTAAATTTCCAAATGACTGAGTTTGGATAATAGTTTTCC---------------TCTTTGTATTTTTAC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983791 55 + 5179401 ATTAAATTTCCAAATGACTGAGTTTGGATAATAGTTTTCC---------------TCTTTGTATTTTTAC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689536 55 - 21726897 ATTAAATTTCCAAATGACTGAGTTTGGATAATAGTTTTCC---------------TCTTTGTATTTTTAC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507786 55 + 204313951 ATTAAATTTCCAAATGACTGAGTTTGGATAGTATTTTTCC---------------CCTTTGTGTTTTTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953764 54 + 71252344 ATTAAATTTCCAAATGACTGAGTTTGAATAATATTTTT-C---------------TCTTTGTGTTTTTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 318245 55 - 1393929 ATTAAATTTCTAAATGACTGAGTTTGGATAATATTTTTCC---------------TCTTTGTGTTTTTAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1394333 55 - 15889662 ATTAAATTTCCGAATGACTGAGTTTAGATAACATTTTTCC---------------CCTTTGTGTTTTTAT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84808098 54 + 108143057 ATTAAATCTCCAAATGACTAATTTTGCATAGTACTTTTCC---------------TCTCTCT-TTTTCCT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 552302 69 - 10520994 ATTAAATCTCCAAATGACTGAGTTTGCATAGTACTTTTCctctctctttttcctttctctct-ttttcct i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1273017 54 - 29863360 GTTAAATCTCCAAATGACTGATTTTGCATACTACTTTTCC---------------TTTCTGT-TTTTTCT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14292819 55 + 91889043 ATTAGATCTCCAAATGACTGAGTTTGTATAGCACTTTTCC---------------TCTTTGCttttcttt i canFam3.chr3 C 0 I 24 s dasNov3.JH570378 1208193 47 - 11655695 ----AATTATCAGATGACTGAGTTTGTATAGTATTTTTCC---------------TTTCTTTTCCT---- i dasNov3.JH570378 I 4 C 0 e mm10.chr13 43993213 0 - 120421639 I a score=540568.000000 s hg38.chr5_GL383530v1_alt 12221 34 + 101241 TTCTCTCTTTTTAGTAATCCCTCGCCAGAAATAA----- s panTro5.chr5 20241011 34 + 181907262 TTCCCTCTTTTTAGTAATCCCTCGCCAGAAATAA----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20258323 34 + 183735486 TTCCCTCTTTTTAGTAATCCCTCGCCAGAAATAA----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4744163 34 - 13748885 TTCCCTCTTTTTAGTAATCCCTCACCAGAAATAA----- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53779462 34 - 163208435 TTCCCTCTTTTTAGTAATGCCTCACCAGAAATAA----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806803 34 - 180051392 TTCCCTCTTTTTAGTAATGCCTCGCCAGAAATAA----- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87911223 34 - 181584905 TTCCCTCTTTTTAGTAATGTCTCGCCAGAAATAA----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1134074 34 - 8785636 TTCCCTCTTTTTAGTAATGCCTCGCCAGAAATAA----- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1602347 34 + 27333823 TTCCGCCTTTTTAGTAATGCCTCGCCAGAAATAA----- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872772 34 - 91010382 TTCCCTCTTTTTAGTAATGCCTCACCAGAAATAA----- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983846 34 + 5179401 TTCCCCCTTTTTAGTAATGCCTCGCCAGAAATAA----- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689591 34 - 21726897 TTCCCTCTTTTTAGTAATGCCTCGCCAGAAATAA----- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507841 34 + 204313951 TTCCCTCTTTTTAGTAATGCCTCACAAGAAATAA----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953818 34 + 71252344 TTCCCTCCTTTTAATAATGCCTCACAAGAAATAA----- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 318300 34 - 1393929 TTCCCTCTTTTTAGTAATGCCTCACAAGAAATAA----- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1394388 34 - 15889662 TTCCCTCTTTTTAGTAATGCCTCACAAGAAATAA----- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84808152 34 + 108143057 TTCTCTCTTTACAGTAATGCTTCACCAGAAATAA----- i micMur3.chr12 C 0 I 25 s proCoq1.NW_012147189v1 552371 34 - 10520994 ttctctctTTACAGTAATGCTTCACCAGAAATAA----- i proCoq1.NW_012147189v1 C 0 I 1 s otoGar3.GL873536 1273071 34 - 29863360 TTCTCTCTTTTCAGTAATGCCTGAACAGAAATAA----- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76429240 34 + 120421639 TTCTTTCTTTTAAGCGATGCCTCCTGTAATATAT----- i mm10.chr13 I 1281 C 0 s canFam3.chr3 14292898 34 + 91889043 tttttttttttcATTAATGCCTCACCGGAAATAA----- i canFam3.chr3 I 24 C 0 s dasNov3.JH570378 1208240 39 - 11655695 TTCTCTTTTCACATTAAAGCCTCATGAGAAATGAAAGAA i dasNov3.JH570378 C 0 C 0 a score=80963.000000 s hg38.chr5_GL383530v1_alt 12255 10 + 101241 GTAGGAAACA s panTro5.chr5 20241045 10 + 181907262 GTAGGAAACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20258357 10 + 183735486 GTAGGAAACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4744197 10 - 13748885 GTAGGAAACA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53779496 10 - 163208435 GTAGGAAACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806837 10 - 180051392 GTaggaaacg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87911257 10 - 181584905 GTaggaaacg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1134108 10 - 8785636 GTaggaaacg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1602381 10 + 27333823 GTaggaaacg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872806 10 - 91010382 GTaggaaacg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983880 10 + 5179401 GTAGGAAACG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689625 10 - 21726897 GTAGGAAATA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507875 5 + 204313951 ATAAG----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953852 3 + 71252344 GTG------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 318334 10 - 1393929 GTAGGGAAAA i cebCap1.NW_016107830v1 C 0 I 40 s aotNan1.NW_018506370v1 1394422 10 - 15889662 GTCGGGAAAA i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 552406 10 - 10520994 GTGGGGGAAA i proCoq1.NW_012147189v1 I 1 I 9 s otoGar3.GL873536 1273105 7 - 29863360 GTGGGGG--- i otoGar3.GL873536 C 0 I 7 s mm10.chr13 76429274 10 + 120421639 ATGGGAAATG i mm10.chr13 C 0 I 1 s canFam3.chr3 14292932 10 + 91889043 GTGGGAAACA i canFam3.chr3 C 0 I 3 s dasNov3.JH570378 1208279 10 - 11655695 GTGAGAAATG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84808186 25 + 108143057 I a score=-1108.000000 s hg38.chr5_GL383530v1_alt 12265 1 + 101241 -C s panTro5.chr5 20241055 1 + 181907262 -C i panTro5.chr5 C 0 C 0 s panPan2.chr5 20258367 1 + 183735486 -C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4744207 1 - 13748885 -C i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53779506 1 - 163208435 -C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806847 1 - 180051392 -c i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87911267 1 - 181584905 -c i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1134118 1 - 8785636 -c i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1602391 1 + 27333823 -c i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872816 1 - 91010382 -t i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983890 1 + 5179401 -C i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689635 1 - 21726897 -C i colAng1.NW_012115488v1 C 0 C 0 s aotNan1.NW_018506370v1 1394432 1 - 15889662 -A i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 552425 1 - 10520994 -C i proCoq1.NW_012147189v1 I 9 I 8 s otoGar3.GL873536 1273119 1 - 29863360 -C i otoGar3.GL873536 I 7 C 0 s dasNov3.JH570378 1208289 1 - 11655695 A- i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14292942 3 + 91889043 I e micMur3.chr12 84808186 25 + 108143057 I e mm10.chr13 76429284 1 + 120421639 I e cebCap1.NW_016107830v1 318344 40 - 1393929 I e saiBol1.JH378106 44953855 0 + 71252344 C e calJac3.chr2 112507880 0 + 204313951 C a score=250338.000000 s hg38.chr5_GL383530v1_alt 12266 21 + 101241 AAAAGGGAAAAAAGGTAAAGA s panTro5.chr5 20241056 21 + 181907262 AAAAGGGAAAAAAGGTAAAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20258368 21 + 183735486 AAAAGGGAAAAAAGGTAAAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4744208 21 - 13748885 AAAAGGGAAAAAAGGTAAAGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53779507 21 - 163208435 AAAAGGGAAAAAAGGTAAAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806848 21 - 180051392 aaaagggaaaaaagataaaga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87911268 21 - 181584905 aaaagggaaaaaagataaaga i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1134119 21 - 8785636 aaaagggaaaaaagataaaga i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1602392 21 + 27333823 aaaagggaaaaaagataaaga i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872817 21 - 91010382 aaaagggaaaaaagataaaga i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983891 21 + 5179401 AAAAGGGAAAAAAGATAAAGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689636 21 - 21726897 AAAGGGGAAAAAAGGTAAAGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507880 19 + 204313951 --TAGGGAAAAAACGTAAAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953855 18 + 71252344 ---GGGAAAAAAATGTAAAGA i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1394433 21 - 15889662 ATGTAAAGAAAAATGTAAAAA i aotNan1.NW_018506370v1 C 0 I 18 s micMur3.chr12 84808211 21 + 108143057 AAACAGGGGGAAATGTAAAGA i micMur3.chr12 I 25 C 0 s proCoq1.NW_012147189v1 552434 21 - 10520994 AAGGGGGGGAAAAACTAAAGA i proCoq1.NW_012147189v1 I 8 C 0 s otoGar3.GL873536 1273120 21 - 29863360 AAAAAATAATAAAAGTAAAGA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76429285 21 + 120421639 GAATGAAATAAAAGGTGAAGA i mm10.chr13 I 1 I 1 s canFam3.chr3 14292945 21 + 91889043 AGAGAGAGAGAGAGAGAAAGA i canFam3.chr3 I 3 C 0 s dasNov3.JH570378 1208290 21 - 11655695 AAATCAGGGAAAAGGTGAAGA i dasNov3.JH570378 C 0 C 0 e cebCap1.NW_016107830v1 318344 40 - 1393929 I a score=79962.000000 s hg38.chr5_GL383530v1_alt 12287 8 + 101241 AAAATGTA s panTro5.chr5 20241077 8 + 181907262 AAAACGTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20258389 8 + 183735486 AAAACGTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4744229 8 - 13748885 AAAACGTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53779528 8 - 163208435 AAAACATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806869 8 - 180051392 aaaacgta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87911289 8 - 181584905 aaaacgta i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1134140 8 - 8785636 aaaacgta i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1602413 8 + 27333823 aaaacgta i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872838 8 - 91010382 aaaacgta i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983912 8 + 5179401 AAAAGGTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689657 8 - 21726897 AAAATGTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507899 8 + 204313951 AAAATGTA i calJac3.chr2 C 0 I 22 s saiBol1.JH378106 44953873 8 + 71252344 AAAATGTA i saiBol1.JH378106 C 0 I 22 s micMur3.chr12 84808232 8 + 108143057 AGAATGTC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 552455 8 - 10520994 AGAATGTC i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1273141 8 - 29863360 ATAAAGTC i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76429307 8 + 120421639 GAAGAATA i mm10.chr13 I 1 C 0 s canFam3.chr3 14292966 8 + 91889043 GTGATATA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1208311 8 - 11655695 ATAATGTA i dasNov3.JH570378 C 0 C 0 e aotNan1.NW_018506370v1 1394454 18 - 15889662 I e cebCap1.NW_016107830v1 318344 40 - 1393929 I a score=6989.000000 s hg38.chr5_GL383530v1_alt 12295 2 + 101241 AC s panTro5.chr5 20241085 2 + 181907262 AC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20258397 2 + 183735486 AC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4744237 2 - 13748885 AC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53779536 2 - 163208435 AC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806877 2 - 180051392 ac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87911297 2 - 181584905 ac i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1134148 2 - 8785636 ac i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1602421 2 + 27333823 ac i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872846 2 - 91010382 ac i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983920 2 + 5179401 AC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689665 2 - 21726897 AC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507929 1 + 204313951 A- i calJac3.chr2 I 22 C 0 s saiBol1.JH378106 44953903 1 + 71252344 A- i saiBol1.JH378106 I 22 C 0 s cebCap1.NW_016107830v1 318384 1 - 1393929 A- i cebCap1.NW_016107830v1 I 40 C 0 s micMur3.chr12 84808240 2 + 108143057 AC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 552463 2 - 10520994 AC i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1273149 2 - 29863360 AC i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76429315 2 + 120421639 AT i mm10.chr13 C 0 C 0 s canFam3.chr3 14292974 2 + 91889043 AT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1208319 2 - 11655695 AC i dasNov3.JH570378 C 0 C 0 e aotNan1.NW_018506370v1 1394454 18 - 15889662 I a score=10762617.000000 s hg38.chr5_GL383530v1_alt 12297 641 + 101241 AAACTAGATAAATCAATCTA---GTTTTTGTTGGTTAGAAGAT-----AAATCTATTCATTTCTTAGTTAAAAATAGCTACAAGGTTGTTAGTTTTAAATGAATAAGGAGGACCACTTCATTTGAATGAAATGATGAT---AAGCATTTCTCTGAGGACT---TTTTTTCTCACTAAGCC--TTTGCATAGGC-GTTTTGATTCATAAAGGTGTTGACGTTCATTAAACTTTATACTC-ATTTTATATTTTTATTTTCTTTGCCTATTTTCACTCAGTGAGAGACTGTGGTTCAGTGTTTCCTTTTTTGGAAAGCATGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCGGAATTGTGCTTT-AAATCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTACAGCTACTAAAATTTGAAGGATTTCAATTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGAGCACTATGTTCTGAGGGAGAACTTTGAGCAAATAGAAATATGGTATAAATGTTATGAAATTGCTAACAGCCTAATGTAAGAATAATGTGGTCTTTGAGATGCTTTC- s panTro5.chr5 20241087 640 + 181907262 AAACTAGATAAATCAATCTA---GTTTTTGTTGGTTAGAAGAT-----AAATCTATTCATTTCTTAGTTAAAAATAGCTACAAGGTTGTTAGTTTTAAATGAATAAGGAGGACCACTTCATTTGAATGAAATGATGAT---AAGCATTTCTCTGAGGACT---TTTTTTCTCACTAAGCC--TTTGCATAAGC-ATTTTGATTCATGAAGGTGT-GACGTTCATTAAACTTTATACTC-ATTTTATATTTTTATTTTCTTTGCCTATTTTCACTCAGTGAGAGACTGTGGTTCACTGTTTCCTTTTTTGGAAAGCATGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCAGAATTGTGCTTT-AAATCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTACAGCTACTAAAATTTGAAGGATTTCAATTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGAGCGCTATGTTCTGAGGGAGAACTTTGAGCAAATAGAAATATTGTATAAATGTTATGAAATTGCTAACAGCCTAATGTAAGAATAATGTGGTCTTTGAGATGCTTTC- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20258399 640 + 183735486 AAACTAGATAAATCAATCTA---GTTTTTGTTGGTTAGAAGAT-----AAATCTATTCATTTCTTAGTTAAAAATAGCTACAAGGTTGTTAGTTTTAAATGAATAAGGAGGACCACTTCATTTGAATGAAATGATGAT---AAGCATTTCTCTGAGGACT---TTTTTTCTCACTAAGCC--TTTGCATAGGC-ATTTTGATTCATAAAGGTGT-GACGTTCATTAAACTTTATACTC-ATTTTATATTTTTATTTTCTTTGCCTATTTTCACTCAGTGAGAGACTGTGGTTCACTGTTTCCTTTTTTGGAAAGCATGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCAGAATTGTGCTTT-AAATCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTACAGCTACTAAAATTTGAAGGATTTCAATTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGAGCGCTATGTTCTGAGGGAGAACTTTGAGCAAATAGAAATATTGTATAAATGTTATGAAATTGCTAACAGCCTAATGTAAGAATAATGTGGTCTTTGAGATGCTTTC- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4744239 641 - 13748885 AAACTAGATAAATCCATCTA---GTTTTTGTTGGTTAGAAGAT-----AAATCTATTCACTTCTTAGTTAAAAATAGCTACAAGGTTGTTAGTTTTAAATGAATAAGGAAGACCACTTCATTTGAATGAAATGATGAT---AAGCATTTCTCTGAGGACT---TTTTTTCTCACTAAGCC--TTTGCATAGGC-GTTCTGATTCATAAAGGTGTTGACGTTCATTAAACTTTATACTC-ATTTTATATTTTTATTTTCTTTGCCTATTTTCACTCAGTGAGAGACTGTGGTTCAGTGTTTCCTTTTTTGGAAAGCATGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCAGAATTGTGCTTT-AAATCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTACAGCTACTAAAATTTGAAGGATTTCAATTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGAGCGCTATGTTCTGAGGGAGAACTTTGAGCAAATAGAAATATTGTATAAATGTTATGAAATTGCTAACAGCCTAATGTAAGAATAATGTGGTCTTTGAGATGCTTTC- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53779538 641 - 163208435 AAACTAGATAAATCAATCTA---GTTTTTGTTGGTTAGAGGAT-----AAATCTATTCATTTCTTAGTTAAAAATAGCTACAAGGTTGTTAGTTTTAAATGAATAAGGAGGACCACTTCATTTGAATGAAATGATGAT---AAGCATTTCTCTGAGGACT---TTTTTTCTCACTAAGCC--TTTGCATAGGC-GTTTTGATTCATAAAGGTGTTGACGTTCATTAAACTTTATACTC-ATTTTATATTTTTATTTTCGTTGCCTATTTTCACTCAGTGAGAGACTGTCGTCCAGTGTTTCCTTTTTTGGAAAGCATGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCAGAATTGTGCTTT-AAATCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTACAGCTACTAAAATTTGAAGGATTTCAATTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGAGCGCTATGTTCTAAGGGAGAACTTTGAGCAAATAGAAATATTGTATAAATGTTATGAAATTGCTAACAGCCTAATGTAAGAATAATGTGGTCTTTGAGATGCTTTC- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87806879 637 - 180051392 aaACTAGATAA----ATCTA---GTTTTTGTCGGTTAGAAGAT-----GAATCTATTCATTTCTTAGTTAAAAATAGCTACAACGTTGTTAGTTTTAAATGAACAAGGAGGACCGCTCCATTCAAATGAAATGATGAT---AAGCATTTCTCTGAGGACT---TTTTTTCTCACTAAGCC--TTTGCATAGGC-GTTTTGATTCATAAAGGGGTTGACGTTCATTAAACtttatactc-attttatatttttattttctttgtctattttCACTCAGTGAGAGACTGTGGTTCAGTGTTTCCTTTTTTGGATAGCATGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCAGAGTTGTGCTTT-AAGTCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTACAGCTACTAAAATTTGAAGGATTTCAATTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGAGCACTATGTTCTGAGGGAGAACTTTGAGCAAATAGAGATGTTGTATAAATGTTATGAAATTGCTAACAGCCTAATGGAAGAATAATGTGGTCTTTGAGATACTTTC- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87911299 637 - 181584905 aaACTAGATAA----ATCTA---GTTTTTGTCGGTTAGAAGAT-----GAATCTATTCATTTCTTAGTTAAAAATAGCTACAACGTTGTTAGTTTTAAATGAACAAGGAGGACCGCTCCATTCAAATGAAATGATGAT---AAGCATTTCTCTGAGGACT---TTTTTTCTCACTAAGCC--TTTGCATAGGC-GTTTTGATTCATAAAGGGGTTGACGTTCATTAAACtttatactc-attttatatttttattttctttgtctattttCACTCAGTGAGAGACTGTGGTTCAGTGTTTCCTTTTTTGGATAGCATGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCAGAGTTGTGCTTT-AAGTCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTACAGCTACTAAAATTTGAAGGATTTCAATTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGAGCACTATGTTCTGAGGGAGAACTTTGAGCAAATAGAGATGTTGTATAAATGTTATGAAATTGCTAACAGCCTAATGGAAGAATAATGTGGTCTTTGAGATACTTTC- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1134150 637 - 8785636 aaACTAGATAA----ATCTA---GTTTTTGTCGGTTAGAAGAT-----GAATCTATTCATTTCTTAGTTAAAAATAGCTACAACGTTGTTAGTTTTAAATGAACAAGGAGGACCGCTCCATTCAAATGAAATGATGAT---AAGCATTTCTCTGAGGACT---TTTTTTCTCACTAAGCC--TTTGCATAGGC-GTTTTGATTCATAAAGGGGTTGACGTTCATTAAACtttatactc-attttatatttttattttctttgtctattttCACTCAGTGAGAGACTGTGGTTCAGTGTTTCCTTTTTTGGATAGCATGTAACTTTCTAGCTTTTTAGACTATTTTGCTTTGCAGAGTTGTGCTTT-AAGTCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTACAGCTACTAAAATTTGAAGGATTTCAATTTTCTTAGGAATTTAG--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGAGCACTATGTTCTGAGGGAGAACTTTGAGCAAATAGAGATGTTGTATAAATGTTATGAAATTGCTAACAGCCTAATGGAAGAATAATGTGGTCTTTGAGATACTTTC- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1602423 637 + 27333823 aaACTAGATAA----ATCTA---GTTTTTGTCGGTTAGAAGAT-----GAATCTATTCATTTCTTAGTTAAAAATAGCTACAACGTTGTTAGTTTTAAATGAATAAGGAGGACCGCTTCATTCAAATGAAATGATGAT---AAGCATTTCTCTGAGGACT---TTTTTTCTCACTAAGCC--TTTGCATAGGC-GTTTTGATTCATAAAGGGGTTGACGTTCATTAAACtttatactc-attttatatttttattttctttgtctattttCACTCAGTGAGAGACTGTGGTTCAGTGTTTCCTTTTTTGGATAGCATGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCAGAGTTGTGCTTT-AAGTCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTACAGCTACTAAAATTTGAAGGATTTCAATTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGAGCACTATGTTCTGAAGGAGAACTTTGAGCAAATAGAGATGTTGTACAAATGTTATGAAATTGCTAACAGCCTCATGGAAGAATAATGTGGTCTTTGAGATACTTTC- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1872848 634 - 91010382 aaACTAGATAA----ATCTA---CTTTTTGTCGGTTAGAAGAT-----GAATCTATTCATTTCTTAGTTAAAAATAGCTACAACGTTGTTAGTTTTAAATGAATAAGGAGGACCGCTTCATTCAAATGAAATGATGAT---AAGCATTTCTCTGAGGACT---TTTTTTCTCACTAAGCC--TTTGCATAGGC-GTTTTGATTCATAAAGGGGTTGACGTTCATTAAACtttatactc-attttatatttttattttctttgtctattttCACTCAGTGAGAGACTGTGGTTCAGTGTTTCCTTTTTTGGATAGCATGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCAGAGTTGTGCTTT-AAGTCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTACAGCTACTAAAATTTGAAGGATTTCACTTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGAGCACTATGTTCTGAGGGAGAACTTTGAGCAAATAGAGA---TGTATAAATGTTATGAAATTGCTAACAGCCTAATGGAAGAATAATGTGGTCTTTGAGATACTTTG- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1983922 637 + 5179401 AAACTAGATAA----ATCTA---GTTTTTGTCGGTTAGAAGAT-----GAATCTATTCATTTCTTAGTTAAAAATAGCTACAACGTTGTTAGTTTTAAATGAATAAGGAGGACCGCTTCATTCAAATGAAATGATGAT---AAGCATTTCTCTGAGGACT---TTTTTTCTCACTAAGCC--TTTGCATAGGC-GTTTTGATTCATAAAGGGGTTGACGTTCATTAAACtttatactc-attttatatttttattttctttgtctattttCACTCAGTGAGAGACTGTGGTTCAGTGTTTCCTTTTTTGGATAGCATGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCAGAGTTGTGCTTT-AAGTCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTACAGCTACTAAAATTTGAAGGATTTCAATTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGAGCACTATGTTCTGAGGGAGAACTTTGAGCAAATAGAGATGTTGTACAAATGTTATGAAATTGCTAACAGCCTCATGGAAGAATAATGTGGTCTTTGAGATACTTGC- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7689667 637 - 21726897 AAACTAGATAA----ATCTA---GTTTTTGTTGGTTAGAAGAT-----AAATCTATTCATTTCTTAGTTAAAAATAGCTATGACCTTGTTAGTTTTAAATGAATAAGGAGGACTGCTTCATTCGAATGAAATGATGAT---AAGCATTTCTCTGAGGACT---TTTTTTCTCACTAAGCC--TTTGCATAGGC-GTTTTGATTCATAAAGGTGTTGACGTTCATTAAACtttatactc-attttatatttttattttctttgtctattttCACTCAGTGAGAGACTGTGGTTCAGTGTTTCCTTTTTTGGATAGCACGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCAGAGTTGTGCTTT-AAATCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTACAGCTACTAAAATTTGAAGGATTTCAATTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGAGCACTATGTTCTGAGGGAGAACTTTGAGCAAATAGAAATGTTGTATAAATGTTATGAAATTGCTAACAGCCTAATGGAAGAATAATGTGGTCTTTGAGACGCTTTC- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112507930 639 + 204313951 AAACTAGATAA----AT-TT---GTTTTTGTTGGTTAGAAGAT-----AAATATATTCATTTCTTAGTTAAAAATAGCTACAACGTTGTTAGTTTTAAATGAATAAGGAGGACCACTTCATTTGAATGAAATGATGAT---AAGCATTTCTCTGAGGAC--TGTTTTTTCTCACTAAGCCTTTTTGCATAGGC-GTTTTGATTCATAAAGGTGTTGATGTTCATTAAACTTCATACTC-ACTTTATATTTGTATTTTCTTTGCCTATTTTCGCTCAGTGAGAGACTGTGGTTCAGTATTTCCTTTTTTGGAAAGTATGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCAGAGTTGTGCTTT-AAATCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTGTAGCTAATAAAATCTGAAGGATTTCAATTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGGGCGCTATGCTCTGAAGGAGAACTTTGAGCAAATAGAAATGTTGTATAAATGTTATGAAATTGCTAACAGCCTAATGCAAGAATAATGTGGTCTTTGAGATGTTTTC- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44953904 640 + 71252344 AAACTAGATAA----ATCTT---GTTTTTGTTGGTTAGAAGAT-----AAATCTATTCATTTCTTAGTTAAAAATAGCTACAAGGTTGTTAGTTTTAAATGAATAAGGAGGACCACGTCATTTGAATGAAATGATAAT---AAGCATTTCTCTGAGGACTTTGTTTTTTCTCACTAAGCC--TTTGCATAGGC-GTTTTGATTCATAAAGGTGTTGATGTTCATTAAACTTCATACTC-ACTTTATATTTCTATTTTCTTTGCCTATTTTCACTCAGTGAGAGACTGAGGTTCAGTGTTTCCTTTTTCGGAAAGCATGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCAGAGTTGTGCTTT-AAATCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAATTTTGTAGCTAATAAAATCTGAAGGATTTCAATTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGGGTGCTATGCTCTGAAGGAGAACTTTGAGCAAATAGAAATGTTGTATAAATGTTACGAAATTGATAACAGCCTAATGCAAGAATAATGTGGTCTTTGAGATGCTTTC- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 318385 636 - 1393929 AAACTAGATAA----ATCTT---GTTTTTGTTGGTTA-AAGAT-----AAATCTATTCATTTCTTAGTTAAAAATAGCTACAAGGTTGTTAGTTTTAAATGAATAAGGAGGACCACTTCATTTGAATGAAATG---AT---AAGCACTTCTCTGAGGACTTTGTTTTTTCTCACTAAAGC--TTTGCATAGGC-GTTTTGATTCATAAAGGTGTTGATGTTCATTAAACTTCATACTC-ACTTTATATTTTTATTTTCTTTGCCTATTTTCACTCAGTGAGAGACTGTGGTTCAATGTTTCCTTTTTTGGAAAGCATGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCAGAGTTGTGCTTT-AAATCTCCCCCAGAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTGTAGCTAATAAAATCTGAAGGATTTCAATTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGGGCGCTATGCTCTGAAGGAGAACTTTGAGCAAATAGAAATGTTGTATAAATGTTATGAAATTGCTAACAGCCCAATGCAAGAATAATGTGGTCTTTGAGATGCTTTC- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1394472 637 - 15889662 AAACTAGATAA----ATCTT---GTTTTTGTTGGTTAGAAGAT-----AAATCTATTCATTTCTTAGTTAAAAATAGCTACAAGGTTGTTAGTTTTAAATGAATAAGGAGGACCACTTCATTTGAATGAAATGATGAT---AAGCATTTCTCTGAGGACTTTGTTTTTTCTCACTAAGCC--TTTGCATAGGC-GTTTTGATTCATAAAGGTGTTGATGTTCATTAAACTTCATACTC-ACTTTATATTTGTATTTTCTTTGCCTATTTTCACTCAGTGAGAGACTGTGGTTCAGTGTTTCCTTTTTTGGAACGCATGTAACTTTCTAGCTTTTCAGACTATTTTGCTTTGCAGAGTTGTGCTTT-AAATCTCCCCCATAAGGGGAAGTGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTGTAGCTAATAAAATCTGAAGGATTTCAATTTTCTTAGGAATTTAA--T--TGGGGAAAATTACTTCAGAAGTTTGCAGGGGCGCTATGCTCTGAAGGAGAACTTTGAGCAAATCGAAA---TGTATAAATGTTATGAAATTGCTAACAGCCTAATGCAAGAATAATGTGGTCTTTGAGATGCTTTC- i aotNan1.NW_018506370v1 I 18 C 0 s micMur3.chr12 84808242 633 + 108143057 AAATTAGAAAA----ATCTA---TTTTTTG----TTCGAAGAT-----AAATCTATTCATTTCTTAGACTAAAATAGCTGTCAGGTTGTGGGTTTTAAATGAATAAG---GGCTGCTTCATTTAAGGGAAATGATTATTAGAAGCATTTCTCTGGGGACTT--TCTTTCCTAACTAAGCC--TTTGCATGGGC-GTTTTGATTCATAAAGGTGTTGGTGTTCATTAAACCTTATACTC-AGTTTATATTTTTATTTTTCCTGCCTATTTTCCCTCAGTGAGAGACTATGGTTCAGTGTTTCCTTTTTTGGTAAGCATGTAACTTTCTAGCTTTTCAGATTATTTTGCTTTGCGGAGTTGTGCTTT-AAAGCTCCCCCAGAAGAGGAAGTGACTCATTTCTATACAGTGGCAT----GTAGGTGTTTGATGAATGCTGCTGCCAGGTAGAAATAGACTGGGATGC-CAGTGTAAATGGAGTTTTACAGATACTAAAATGTGAAAGATTTCAATTTTCTTAGAAGTTTAAACT--GGGGGAAAATTACTTCAGAAGTTGGTAAGGGTTCTGTGTTCCAAGGGAGAACTTTGGGCAAATAAAAA---TGTGTAAATGTTAGGAAATTGCTGACAGCCTAATGCAAGAATGATGTGTTCTTTGAGATGCTTTC- i micMur3.chr12 C 0 I 165 s proCoq1.NW_012147189v1 552465 632 - 10520994 AAATTAGAAAA----ATCTA---TTTTTTG----TTCGAAGAT-----AAATCTATTCATTTCTTAGTCTAAAATAGCTATTAGGTTGTGGGTTTTAAATGAATAAG---GGCTGCTTCATTTAAGTGAAATGATTAT---AAGCATTTCTCTGGGGACTT--TCTTTCCTTACTAAGCC--TTTGCATAGGC-GTTTTGATTCATAAAGGTGTTGGTGTTCATTAAACCTTATACTC-TGTTTATATTTTTATTTTTCCTGCCTATTTTCACTCAGTGAGAGACTATCATTCAGTGTTTCCTTTTTTGGTAAGTATGTAACTTTCTAGCTCTTCAGATTATTTTGCTTTGCGGAGTTGTGCTTT-AAATCTCCCCCAGAAGAGGAAGTGACTCATTTCTATACAGTGGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGGAATGC-CAGTGTAAATGGAGTTTTACAGCTACTAAAAGGTGAAAGATTTCAATTTTCTTAGGAGTTTAAAGTGGGGGGGAAAATTGCTTCAGAAGTTGGTAAGGGTTTTGTGTTCTGAGGGAGAACTTTGGGCAAATAAAAA---TGTGTAAATGTTATGAAACTGCTGACAGCCTAATGCAAGAATGATGTGTTCTTTGAGATGCTTTC- i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1273151 637 - 29863360 AAATTAGAAAA----ATCTCATTTTTTTTG--GTTTAGATGATATTAAAAATCTATTCATTTCTAAGTCAAAAATAGCTACAGGGTTGTAGGTTTTAAATGAATAAG---GGCTGCCTCCTTTGAGTGAAATGATAAT---AAGCATTTCTCTGAGGACTT--TCTTTCCTCACTAAGCC--TTTG--TAGGT-GTTTTGATTCAAAAAGGTGCTGATGTTCATTAAATTTTATACTC-AGTTTATATTTTTATTTTCTCTGCCTATTTTCACTCAATGAGAGACTACAGTTCAGCATTTCCTTTTTTGGTAAGTATGAAGCTCTCTAGCTTTTCAGATTATTTTGCTTTGTAGAGGTACGCCTT-AGCTCTCTCGCAGAAGGGGAAGTGACTCATTTCTATACAGTGGCGT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CA-TGTAAATGGAGTTTTACAGCTACTCAAATTTGAAGGATTTCAATTTTCTTAGGGATTTAAACT--GGGAGAAAATTACTTCTTAAGTTGGTAAGGGCTCTGTGTTCCAAGGGAGAACTTTGAGCAAATAAAAA---TCTACAAATGTTATGAAATAGCTGACAGACTAATGCAGGAATGATGTGTTCTTTGAGCTGCTTTT- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76429317 621 + 120421639 AAATTAGGAAA----ACTTA---GCTCTTG-GGGTTTGAAGAT-----GAATCTCTTCATTGCTTAGGTAAGATTTGCGTGAAGTTTGTGCATGCTAAATGTGCCAG---TGCAGCTCTGTTTGACTGAAATG--------GGATAGTTCTCTGGAGATTT--CTTCCTCCCTTGCAGCC--CTGCTATAGGC-GTTTCGATTCAGGGCAGCGTCTCTGCTCTTCACA-TTTATACTCAAGTCTGTCCTTTTATTTTCTCTGCCTATTTTTATTCAATGAGAGACAGTGGTTGA--GTTTCCTTTTTTGGTAAGTAAGTAACTTGCTAGCTTTCCCGACTGTTTGTCTTTGTAGAGTCGCACTGT-AAGTTTTCCCCAGAAAGGGATATGACTCATTTCTCTATGGTAGCATGTAGGTAGGTGTGTGATGACTACTGCTGCCAGGTAGAACGAAGCTGTAATTTGCTGTCCAAGTGGAACTGCACAGCTACTAAAA-CAGAAGGATTTCAGTTTTCCTCAGAACTTAAAGT--GAAGGAGAATAG---TAGCTGCTGCTAAAGACTTTGTGTTATAAGGGAG--CTCTGAGCAAATTAAAA---TGTACATAC-TAATGAACTTGCTTCTTGTCTAATGTGAGAATGGTGTGTTTTTTGAGTGGCT---- i mm10.chr13 C 0 C 0 s canFam3.chr3 14292976 623 + 91889043 AATTTAGAAAA----ATCTA---GTTC-TGTTGGTTA-AAGAT-----GAACCTATTCATTTCTTAGTCAAAAATAGCCCCAGGGCTGT--GTTTTAAATGAATAAG---GGTCACATCATTTGAATGACATGATTTA---AAGCATTCTTCTGAGGACTG--CCTTTGCTCACTAAGCC-TTTTACATAGGC-ATTTTGATTCATAAAGGTGTTGATGTTCATTAAACCTTATAGTT-GATTTATATTTTTATTGTCTCTACCTATTTTCACTCCCTGAGAGACTGTGGTTCAGTGTTCCCTTTTTTGGCAAATATGTAACTTTCTAGCTCTTCAGCCTATTTTGCTTCACGTAGTTGTGCTTT-AAATCTCCTCCAGAAGAGGAAATGACTCATTTCTATACAGTAGCAT----GTAGGTGTTTGATGAATGTTGCTGCCAGGTAGAAATAGACTGTAATGC-CAGTGTAAATGGAGTTTTACAGCTACTAAAATCTGAAGGATTTAAATTTTCTTAGGAATTTAAATT--GAGGGAAAGTAACTTTAGATGTTGGTAAGGGCTTGATGTT-----------CTTTGGGCAAACTAAAAAGTGGTATGAATGTTAAGAAATTGCCTGTGGCCTAATGAAAGAATGTCATGTTCTTTAAGATGTCTTG- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1208321 605 - 11655695 AAATGAGACAA----ATCTA---GTTTTTGTTTGCCAAAAGAT-----GAATCTACCCATGTCTTAGATGAAAATTGCCACAGGGTTGTGAGTTTTAAATGAATAAG---GATTACTTCATATGAATTAAATATTTAT-------ATTTCTCTGAGAACT---TTTTAATGCAGTAGCCT--TTTCCACGGGTAATTTTGATTCATAAAGGGGTTGATATTCATTAAACCTCATACAC-AATTTATATTTTTCTTTTCTCTGCCTATTTTCAGTCAGTGAGAGACTAT-----AGTGTTTCCTTTTTTGGTAAGCATGTAATTTTTTAGCTTTTCAGAATATTTTGCTTTGAGGAATTGTGCTTTAAAATTTCCTCCAGGAAAGGAAGTGACTCATTTATACAGGGTAGCAT----GTAGGTGTTTGATGAATATTGCTGCCAGGTAGAAATAGAATGTAATGC-CAGTGTAAGTGGAGTGTTATAGTTACTAAAATATGAAGGATTTCAATTTTTCTAGCAATTTAA--A--TA-GGAATATAACTTCAGAAGTTGGCAAGGGCTCTAT-TTCTGAGGGAAAACTTTGGGCAAACGAAAAAGTGGTTGCATTAT---------------------ATGTGAGAATGATGTGTTCTTTGAGGTGCCTTTT i dasNov3.JH570378 C 0 C 0 a score=1863719.000000 s hg38.chr5_GL383530v1_alt 12938 123 + 101241 CCCCACTAA--AATATTGGC-----------TAAGCTTTAGCAGGATGAGGCTCTAGGTGT------AG------------------------------TTTAAAACTTCTGGCTCTTGTGAATT--CAGAGGAATCTCCAAGTCTATGTGTTTTTCAAGCTGCTATGGTTTAA s panTro5.chr5 20241727 152 + 181907262 CCCCACTAA--AATATTGGC-----------TAAGCTTGAGCAAGATGAGGCTCTAGGTGT------AGCCTGATATGTAAGATC-ACCTAGACCAATTTTTAAAACTTCTGGCTCTTGTGAATT--CAGAGGAATCTCCAAGTCTATGTGTTTTTCAAACTGCCATGGTTTAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259039 152 + 183735486 CCCCACTAA--AATATTGGC-----------TAAGCTTGAGCAGGATGAGGCTCTAGGTGT------AGCCTGATATGTAAGATC-ACCTAGACCAATTTTTAAAACTTCTGGCTCTTGTGAATT--CAGAGGAATCTCCAAGTCTATGTGTTTTTCAAACTGCTATGGTTTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4744880 152 - 13748885 CCCCACTAA--AATACTGGC-----------TAAGCTTGAGCAGGATGAGGCTCTAGGTGT------AGCCTGATTTGTAAGATC-ACCTAGACCAATTTTTAAAACTTCTGGCTCTTGTGAATT--CAGAGGAATCTCCAAGTCTATGTGTTTTTCAAACTGCTATGGTTTAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53780179 152 - 163208435 CCCCACTAA--AATATTGGC-----------TAAGCTTGAGCAGGATGAGGCTCTAGGTGT------AGCCTGATATGTAAGATC-ACCTAGACCAAGTTTTAAAACTTCTGGCTCTTGTGAATT--CAGAGGAATGTCCAAGTCTATGTGTTTTTCAAACTGCCGTGGTTTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87807516 151 - 180051392 CCCCACTGA--AATGTT-GC-----------TAAGCTGGAGCAGGATGAGGCTCCAGGTGT------AGCCTGATATGTAAGATC-ACCTAGACCAATTTTTAAAACTTCTGGCCATTGTAAATT--CAGAGGAACCTCCAAGTCTATGTGTTTTTCAGACTGCCGTGGTTTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87911936 151 - 181584905 CCCCACTGA--AATGTT-GC-----------TAAGCTGGAGCAGGATGAGGCTCCAGGTGT------AGCCTGATATGTAAGATC-ACCTAGACCAATTTTTAAAACTTCTGGCCCTTGTAAATT--CAGAGGAACCTCCAAGTCTATGTGTTTTTCAGACTGCCATGGTTTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1134787 151 - 8785636 CCCCACTGA--AATGTT-GC-----------TAAGCTGGAGCAGGATGAGGCTCCAGGTGT------AGCCTGATATGTAAGATC-ACCTAGACCAATTTTTAAAACTTCTGGCCATTGTAAATT--CAGAGGAACCTCCAAGTCTATGTGTTTTTCAGACTGCCGTGGTTTAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1603060 152 + 27333823 CCCCACTGA--AATGTTGGC-----------TAAGCTGGAGCAGGATGAGGCTCCAGGTGT------AGCCTGATATGTAAGATC-ACCTAGACCAATTTTTAAAACTTCTGGCCATTGTAAATT--CAGAGGAACCTCCAAGTCTATGTGTTTTTCAGACTGCCGTGGTTTAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1873482 152 - 91010382 CCCCACTGA--AATTTTGGC-----------TAAGCTGGAGCAGGATGAGGCTCCAGGTGT------AGCCTGATATGTAAGATC-ACCTAGACCAATTTTTAAAACTTCTGGCCATTGTAAATT--CAGAGGAACCTCCAAGTCTATGTGTTTTTCAGACTGCTGTGGTTTAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1984559 152 + 5179401 CCCCACTGA--AATGTTGGC-----------TAAGCTGGAGCAGGATGAGGCTCCAGGTGT------AGCCTGATATGTAAGATC-ACCTAGACCAATTTTTAAAACTTCTGGCCATTGTAAATT--CAGAGGAACCTCCAAGTCTATGTGTTTTTCAGACTGCCGTGGTTTAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7690304 152 - 21726897 CCCCACTGA--AATATTGGC-----------TAAGCTGGAGCAGGATGAGGCTCCAGGTGT------AGCCTGATATGTAAGATC-ACCTAGACCAATTTTTAAAACTTCTGGCCACTGTGAATT--CAGAGGAACCTCCAAGTCTATGTGTTTTTCAGACTGCCGAAGTTTAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112508569 161 + 204313951 CTCCACTAA--AATACTGGCTTAAGACTGTATAGGCTTTAGC--GGTGAGGCTCGAGGTGT------GGCCTGATATGTAAGATC-ACCTAGACCAATTTTTAAAACTTCTGGCTGTTGCGAATT--CAGAGGGATCTCCGTGTCTATATGTTTTTCAAACTGCTGTGGTTTAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44954544 163 + 71252344 CTCCACTAA--AATACTGGCTTGAGACTGTATAAGCTTTAGCAGAGTGAGGCTCCAGGTGT------GGCCTGATATGTAAGATC-ACCTAGACCAATTTTTAAAACTTCTGACTGTTGTGAATT--CAGAGGGATCTCCAAGTCTATATGTTTTTCCAACTGCTGTGGTTTAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319021 161 - 1393929 CTCCACTAA--AATATTGGCTTGAGACTGTCTAAGCTTTAGCAGAGTGAGGCTCCAGGTGT------GGCCTGATATGTAAGATC-ACCTAGACCAATGTTTAAAACTTCTGGC--TTGGAGATT--CAGAGGGATCTCCAAGTCTATATGTTTTTCGAACTGCTGTGGTTTAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1395109 163 - 15889662 TTCCACTAA--AATATTGGCTTGAGACTGTATAAGCTTTAGCAGAATGAGGCTCCAGGTGT------GGCCTGATATGTAAGATC-ACCTAGACCAATTTTTAAAACTTCTGGCTGTTGCGAATT--CAGAGGGATCTCCAAGTCTATATGTTTTTCGAACTGCTGTGGTTTAA i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 553097 166 - 10520994 ---TCCTGA--AATATTGGCTTGGGACTGCATAAGCTTGATCAGGATGATACCCTGGGTGTAGTGTAGGACTGATATGTGAGATC-GCCTCGACCAATTTTCAGGACTTTTGGCTGTTGGGAATT--CACAGAAATCTCCAAGTCTATGTGTTCTTCAAACTCCTGTGGTATAA i proCoq1.NW_012147189v1 C 0 I 7 s otoGar3.GL873536 1273788 156 - 29863360 ---TCCTAATGAAGTTTGTCTTGGGGCTG--------TGAC--GCCTGATACCCCGGGCACAGTGT-GGCCTGATGTGCGGTCTC-ACTGCGACTAGTGGTCAGGAC-TTGGGCCGTTACGGATT--CACGGGGATCTCCAAGTCTGTGCGTTCTGTGGACTGCTGTGGTATAA i otoGar3.GL873536 C 0 I 7 s mm10.chr13 76429938 150 + 120421639 -----CTGA--CATATTGGCTTGGGATTA--TGGGGTGGCAC----TGGGGCATAGAGCA-------GGCCTGATAGGAAAGATC-ACATAGACTTGCGTGTAAAACTTCTGACC-TCATGATTT--CATAGAACTCTCCCATCCTCAGTATTCTTCAGTCTGCTGTAGTATCA i mm10.chr13 C 0 I 7 s canFam3.chr3 14293599 169 + 91889043 -CCCCCTAA--AACATTGTCTGGGGACTGTGCAGGTTTGAGCAGGATGATATCCCAGGTGTATTATGGGCCTGACATGTCAGATCAACCCAGATCACTTTGTAAGATTTCTGACTGTTGAGAATT--CACAGAAATTTCCAAGTCTTTGTGTTCTTCAGACTGCTGTGGTATAA i canFam3.chr3 C 0 I 6 s dasNov3.JH570378 1208926 168 - 11655695 CTCCTCTAA--AGTACTGACTTGGGACTTG-CAAGCTTTGGCAGGATAATACCCCAGATGTAGTGGAGGCATGATGTGTGAGATC-AGCTAGACTGATTTTTGAGGCTTCTGAC--TTACAAATTCACACAAAAATCTCCAAGTCTATGTGTTCTTCAGACTGCTGTGGTTGAA i dasNov3.JH570378 C 0 I 7 e micMur3.chr12 84808875 165 + 108143057 I a score=4219699.000000 s hg38.chr5_GL383530v1_alt 13061 270 + 101241 AGGAAATGAGTTGTA-------CAG-----------TTATCTTCCTATGCAGACTTCTTAATGTTCTAAAAATAATGGCATTATCCTCATTTTAGAGACCAT--------------------------------------------------------------------------AAGTTGAGTTACAAATATGACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGATGTGAGAAAGATCTTGACTTGTGTGGAAAGACTGATGTCAATGTTTTGGATGCACATTTCCCACATGGATAGGGTTTA-CTGAATATGAAGGATAATAATA--GAGAAGATAT-TTGGCTAATTAAAAGTTTCTTTTC s panTro5.chr5 20241879 270 + 181907262 AGGAAATGAGTTGTA-------CAG-----------TTATCTTCCTATGCAGACTTCTTAATGTTCTAAAAATAATGGCATTATCCTGATTTTAGAGACCAT--------------------------------------------------------------------------AAGTTGAGTTACAAATATGACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGATGTGAGAATGATCTTGACTTGTGTGGAAAGACTGATGTCAATGTTTTGGATGCACATTTCCCACATGGATAGGGTTTA-CTGAATATGAAGGATAATAATA--GAGAAGATAT-TTGGCTAATTAAAAGTTTCTTTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259191 270 + 183735486 AGGAAATGAGTTGTA-------CAG-----------TTATCTTCCTATGCAGACTTCTTAATGTTCTAAAAATAATGGCATTATCCTCATTTTAGAGACCAT--------------------------------------------------------------------------AAGTTGAGTTACAAATATGACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGATGTGAGAATGATCTTGACTTGTGTGGAAAGACTGATGTCAATGTTTTGGATGCACATTTCCCACATGGATAGGGTTTA-CTGAATATGAAGGATAATAATA--GAGAAGATAT-TTGGCTAATTAAAAGTTTCTTTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745032 270 - 13748885 AGGAAATGAGTTGTA-------CAG-----------TTATCTTCCTATGCAGACTTCTTAATGTTCTAAAAATAATGGCATTATCCTCATTTTAGAGACCAT--------------------------------------------------------------------------AAGTTGAGTTACAAATATGACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGATGTGAGAATGATCTTGACTTGTGTGCAAAGACTGATGTCAATGTTTTGGATGCACATTTCCCACATGGATAGGGTTTA-CTGAATATGAAGGATAATAATA--GAGAAGATAT-TTGGCTAATTAAAAGTTTCTTTTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53780331 270 - 163208435 AGGAAGTGAGTTGTA-------CAG-----------TTATCTTCCTATGCAGACTTCTTAATGTTCTAAAAATAATGGCATTATCTTCATTTTAGAGACCAT--------------------------------------------------------------------------AAGGTGAGTTACAAATATCACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGACGTGAGAATGAGCTTGACTTGTGTGGAAAGACTGATGTCAATGTTTCGGATGCACATTTCCCACATGGATAGGGTGTA-CAGAATATGAAGGATAATAATA--GAGAAGATAT-TTGGCTAATTAAAAGTTTCTTTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87807667 269 - 180051392 AGGAAATGAGTTGTA-------CAG-----------TTATCTTCCTATGCAGACAACTTAATGTTCTAAAAATAATGGCATTATCCTCATTTTAGAAACCAT--------------------------------------------------------------------------AAGTTGAGTTATAAATATCACATTGTCCTGCAAAGCAGCTGCCACAC-TGAGACATGAGAATGATCTTGACTTGTGTGGAAAGACTGATGTCAATGTTTTGGGT-CACATTTCCCACCTGGATAGGGTTTA-CTGAATATGAAGGATAATAATA--GAGAAGATAT-TTGGCTAATTAAAAGTTTCTTTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912087 269 - 181584905 AGGAAATGAGTTGTA-------CAG-----------TTATCTTCCTATGCAGACAACTTAATGTTCTAAAAATAATGGCATTATCCTCATTTTAGAAACCAT--------------------------------------------------------------------------AAGTTGAGTTATAAATATCACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGACATGAGAATGATCTTGACTTGTGTGGAAAGACTGATGTCAATGTTTTGGGT-CACATTTCCCACCTGGATAGGGTTTA-CTGAATATGAAGGATAATAATA--GAGAAGATAT-TTGGCTAATTAAAAGTTTCTTTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1134938 269 - 8785636 AGGAAATGAGTTGTA-------CAG-----------TTATCTTCCTATGCAGACAACTTAATGTTCTAAAAATAATGGCATTATCCTCATTTTAGAAACCAT--------------------------------------------------------------------------AAGTTGAGTTATAAATATCACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGACATGAGAATGATCTTGACTTGTGTGGAAAGACTGATGTCAATGTTTTGGGT-CACATTTCCCACCTGGATAGGGTTTA-CTGAATATGAAGGATAATAATA--GAGAAGATAT-TTGGCTAATTAAAAGTTTCTTTTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1603212 269 + 27333823 AGGAAATGAGTTGTA-------CAG-----------TTATCTTCCTATGCAGACAACTTAATGTTCTAAAAATAATGGCATTATCCTCATTTTAGAAACCAT--------------------------------------------------------------------------AAGTTGAGTTATAAATATCACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGACATGAGAATGATCTTGACTTGTGTGGAAAGACTGATGTCAATGTTTTGGGT-CACATTTCCCACCCGGATAGGGTTTA-CTGAATATGAAGGATAATAATA--GAGAAGATAT-TTGGCTAATTAAAAGTTTCTTTTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1873634 269 - 91010382 AGGAAATGAGTTGTA-------CAG-----------TTATCTTCCTATGCAGACAACTTAATGTTCTAAAAATAATGGCATTATCCTCATTTTAGAAACCAT--------------------------------------------------------------------------AAGTTGAGTTATAAATATCACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGACATGAGAATGATCTTGACTTGTGTGGAAAGACTGATGTCAATGTTTTGGGT-CACATTTCCCACCTGGATAGGGTATA-CTGAATATGAAGGATAATAATA--GAGAAGATAT-TTGGCTAATTAAAAGTTTCTTTTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1984711 269 + 5179401 AGGAAATGAGTTGTA-------CAG-----------TTATCTTCCTATGCAGACAACTTAATGTTCTAAAAATAATGGCATTATCCTCATTTTAGAAACCAT--------------------------------------------------------------------------AAGTTGAGTTATAAATATCACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGACATGAGAATGATCTTGACTTGTGTGGAAAGACTGATGTCAATGTTTTGGGT-CACATTTCCCACCTGGATAGGGTTTA-CTGAATATGAAGGATAATAATA--GAGAAGATAT-TTGACTAATTAAAAGTTTCTTTTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7690456 267 - 21726897 AGGAAATGAGTTGT---------AG-----------TTATCTTCCTATGCAGACAACTTAATGTTCTAAAAATAATGGCATTATCCTCATTTTAGAAACCAT--------------------------------------------------------------------------AAGTTGAGTTATAAATATCACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGACATGAGAATGATCTTGACTTGTGCGGAAAGACTGATGTCAATGTTTTGGGT-CACATTTCCTACCTGGATAGGGTTTA-CTGAATATGAAGGATAATAATA--GAGAAGATAT-TTGGCTAATTAAAAGTTTCTTTTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112508730 277 + 204313951 AGGAAGTGAGTTGTATAGTTATTAG-----------TTATCTTTCTCTGCAGACTTTTTAATGTTCTAAAAATAACATCATTATCCTCATTTCAGAGACCAT--------------------------------------------------------------------------AAGTTGAGTTACAAATATCACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGACATGAGAATGATTTTGACTTGCCTGGAAAGACTGATGTCAGGGTTTTGGGGGCACATTTCCCACATGGATAGGGTTTA-TTGAATGTGAGTGATAATAATA--GAGAAGATAT-TTGGCTAATTAAAAGTTTCTTTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44954707 270 + 71252344 AGGAAGTGAGTTGTA-------TAG-----------TTATCTTCCTCTGCAGACTTTTTAATGTTCTAAAAATAACATCATTATCCTCATTTCAGAGACCAT--------------------------------------------------------------------------AAGTTGAGTTACAAATATCACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGACATGAGAATGATCTTGACTTGTGTGGAAAGACTGATGTCAGTGTTTTGGGGGCACATTTCCCACATGGATAGGGTTTA-TTGAATATGAAGGATAATAATA--GAGAAGACAT-TTGGCTAATTAAAAGTTTCTTTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319182 270 - 1393929 AGGAAGTGAGTTGTA-------TAG-----------TTATCTTCCTCTGCAGACTTTTTAATGTTCTAAAAATAACATCATTATCCTCATTTCAGAGACCAT--------------------------------------------------------------------------AAGTTGAGTTACAAATATCACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGACATGAGAATGATCTTGACTTGCATGGAAAGACTGATGTCAGTGTTCTGGGGACACATTTCCCACATGGATAGGGTTTA-TTGAATATGAAGGATAATAATA--GAGAAGATAT-TTGGCAAATTAAAAGTTTCTTTTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1395272 268 - 15889662 AGGAAGTGAGTTGTA-------TAG-----------TTATCTTCCTCTGCAGACTTTTTAATGTTCTAAAAATAACATCATTATCCTCATTTCAGAGACCAT--------------------------------------------------------------------------AAGTTGAGTTACAAATATCACATTGTCCTGCAAAGCAGCTGCCATAC-TGAGACATGAGAATGATCTTGACTTGAGTGGAAAGACTGATGTCAGTGTTTTGGGGGCACATTTCCCACATGGATAGGGTTTA-TTGAATATGAAGGATAATAATA--GAGAAGATAT-TTGGCTAATT--AAGTTTCTTTTC i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84809040 275 + 108143057 AGGAAGTGAATTGTA-------TAG-----------TTATCTTCCTCTGCAGACTTCTCAATGTCCTAAAAATAATGGCATTATCCTCATTTTggccacgat-----------------------------------------------------------------------gagaggttgagttgcaaataccacattgtcctgcaaagcagctgccacacgtgaaacacgagaatgatcttgacttgtgtggaaagactgatgtcagtatttttagg-cacatttcccacacaaatagGGCTTA-TTACATATTAAGGACAATAACATGTAGAAGATAA-ATGGCTCATTAAAAACTTCTTTTC i micMur3.chr12 I 165 C 0 s proCoq1.NW_012147189v1 553270 275 - 10520994 AGGAAGTGAATTGTA-------CAG-----------TTATCTTCCTCTGCAGACTTCTTAATGTTCTAAAAATAATGGCACTATCCTCATTTTGGCCACGAT-----------------------------------------------------------------------GAGAAGTTGAGTTGCAAATACCACATTGTCCTGCAAAGTAGCTGCCATACATGAAACACGAGAATGATCTCGATTTGTGTGGAGAGACTGATGTCAGTATTTTTGTG-CATATTTCCCATATGGATAGGGCTTA-TTATATGTTAAGGACAATAATATGTAGAAGATAA-ATGCCTAATTAAAAACTTCTTTTC i proCoq1.NW_012147189v1 I 7 C 0 s otoGar3.GL873536 1273951 277 - 29863360 AGGAAGTGAATTGTA-------TAGTTATCTTACACTTATCTTCCTCTGCACACTTCATAATGTTCTAAAAATAATGGCCTTACCCTCATTTTGGCCACCAC-----------------------------------------------------------------------CGGAAGCTAAGTTGCAAATACTGCACCGTCCTGCAAAGCAGCTGCCCTACTAGAAATGCGAGGATGGCCTTGA-----GGGGAGAGGTTGGCGACTGCA-----GAG-GGCGTTTCCCACAGGGA-GGGGCTTATTTACATACGAGAGACAATCAAATGTAGAAGACAATATAGCTAATTAAAAATTTCTTTTC i otoGar3.GL873536 I 7 I 538 s mm10.chr13 76430095 342 + 120421639 AGGAAATGAGTTGCA-------CAG-----------TTATCAGCCTCTGCAGACTTCTTAATTCTCTAAAAATAGTAGTATTATCCTCAGTT-GgagatgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagGCTGAGTTGC-AATGCCACATTTTCTTGCAGGGCAGCCATCATGC-CACAGCATAGGGACCTTTCTTCTTGCTGTGGCAAGGCTAATGCCAACACTATAGGT--ACAATTTTCATATGTATAATGATTT-TTAAATTTGAAGGTTAGCAATAAGTAGAAGATAG-TTAGCTAATTAAAATTTCCTTTTA i mm10.chr13 I 7 C 0 s canFam3.chr3 14293774 271 + 91889043 AGGAAGTAGGTTGTA-------TAG-----------TTATCTTCCTTTGCAGACTTCTTAATGTCCTAAAAATAATGGCATTGTCCTCATTTTACAGACCAT-----------------------------------------------------------------------AAGAAATTGAGTTGCAAATACTACATTGTCCTGCGAAACAGCTACCAGAC-TGAAACATGAGAAAGGTCTTTACCCACGTGGAAAGGCTGTTGTGAGTGCTTTTTAGGCACAATTCCCACATGGGTAGGGTTTA-TGAAATATTAAGAGCAATTATATGTAGTAGATAT-CTGGCTAATTATATGTTTTC---- i canFam3.chr3 I 6 C 0 s dasNov3.JH570378 1209101 269 - 11655695 AGGAAGTGAGTTGTA-------CAG-----------TTATCTTCTTCTGCAGACTTCTTAATGTTCTAAAAATAATGGCATTGTCCTCATTT-GGAGACCAT--------------------------------------------------------------------------AAGTCAAACTGCAAATACCACTTTGTCCTGGAAAGCAGCTGACATAC-AATGAAATGAGAGTGATCTTTACTTGTATAGAAAGGCTGATGTTACTGTTTTTGGC-CACAATTTCTACATGGATAGGGCCCA-TCAAATATGAAGGGCAATAATATGTAGTAGATAT-CTGGTTAATTA-ATGTTTCTTTCC i dasNov3.JH570378 I 7 C 0 a score=351120.000000 s hg38.chr5_GL383530v1_alt 13331 27 + 101241 CTAATAAAGCTA--GATTTCAATAGTTAT s panTro5.chr5 20242149 27 + 181907262 CTAATAAAGCTA--GATTTCAATAGTTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259461 27 + 183735486 CTAATAAAGCTA--GATTTCAATAGTTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745302 27 - 13748885 CTAATAAAGCTA--GATTTCAATAGCTAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53780601 27 - 163208435 CTAATAAAGCTA--GATTTCAATAGTTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87807936 27 - 180051392 CTGATAAAGATA--GATTTCAATAGTTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912356 27 - 181584905 CTGATAAAGATA--GATTTCAATAGTTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135207 27 - 8785636 CTGATAAAGATA--GATTTCAATAGTTAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1603481 27 + 27333823 CTAATAAAGATA--GATTTCAATAGTTAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1873903 27 - 91010382 CTAATAAAGTTA--GATTTCAATAGTTAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1984980 27 + 5179401 CTAATAAAGATA--GATTTCAATAGTTAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7690723 27 - 21726897 CTAATAAAGCTG--GATTTCAATAGTTAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509007 29 + 204313951 CTAATAAAGCTATCAATATCAATAGTTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44954977 27 + 71252344 CTAATAAAGCTA--GATTTCAATAGTTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319452 27 - 1393929 CTAATAAAGCTA--GATTTCAATAGTTAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1395540 27 - 15889662 CTAATAAAGCTA--GATTTCAATAGTTAT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84809315 27 + 108143057 CTAATAAAGCCA--AATTCCATTAGTTAT i micMur3.chr12 C 0 I 283 s proCoq1.NW_012147189v1 553545 27 - 10520994 CTAATAAACCCA--GATTCCACCAGTTAT i proCoq1.NW_012147189v1 C 0 C 0 s mm10.chr13 76430437 27 + 120421639 CTGATAGAGCCA--GATCTCATGGTTCAT i mm10.chr13 C 0 C 0 s canFam3.chr3 14294045 9 + 91889043 ------------------TTAAT--TTAT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1209370 27 - 11655695 CCAGGACAGCCA--GATTCCACTAGTTAT i dasNov3.JH570378 C 0 C 0 e otoGar3.GL873536 1274228 538 - 29863360 I a score=667411.000000 s hg38.chr5_GL383530v1_alt 13358 64 + 101241 AACTgtacctagagcaata-----------------------------------------------cctta--------ttatatag-tatgtgctcaataaggtt------tcataaaaataaat s panTro5.chr5 20242176 63 + 181907262 AAcagtacctagagcaata-----------------------------------------------cctta--------ttatatag-tatgtgcttaataaggtt------tcataaaa-taaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259488 63 + 183735486 AAcagtacctagagcaata-----------------------------------------------cctta--------ttatatag-tatgtgcttaataaggtt------tcataaaa-taaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745329 64 - 13748885 AAcagtacctagagcaata-----------------------------------------------cctta--------ttatatag-tatgtgcttaataaggtt------tcataaaaataaat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53780628 64 - 163208435 AAcagtacctagagcaata-----------------------------------------------cctta--------ttatatag-tatgtgcttaataaggtt------tcataaaaataaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87807963 64 - 180051392 ATCAGTACATAGAGCAGCA-----------------------------------------------CCTTA--------TTATATAG-TATGTACTTAATAAGTTT------GCATAAAAATAAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912383 64 - 181584905 ATCAGTACATAGAGCAGCA-----------------------------------------------CCTTA--------TTATATAG-TATGTACTTAATAAGTTT------GCATAAAAATAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135234 64 - 8785636 ATCAGTACATAGAGCAGCA-----------------------------------------------CCTTA--------TTATATAG-TATGTACTTAATAAGTTT------GCATAAAAATAAAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1603508 64 + 27333823 ATCAGTACATAGAGCAGCA-----------------------------------------------CCTTA--------TTATATAG-TATGTACTTAATAAGTTT------TCATAAAAATAAAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1873930 64 - 91010382 ATCAGTACATAGAGCAGCA-----------------------------------------------CCTTA--------TTATATAG-TGTGTACTTAATAAGTTT------TCATAAAAATAAAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985007 64 + 5179401 ATCAGTACATAGAGCAGCA-----------------------------------------------CCTTA--------TTATATAG-TATGTACTTAATAAGTTT------TCATAAAAATAAAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7690750 64 - 21726897 ATCAGTACCTAGAGCAGTA-----------------------------------------------CCTTA--------TTATATAG-TATGTACTTGATAAGGTT------TCATAAAAATAAAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509036 61 + 204313951 C---GTACCTAGAGTAGCA-----------------------------------------------CCTTA--------TTATACAG-TATGTGCTTCATAAAGTT------TCATAAAAATAAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955004 62 + 71252344 CATAGTACCTAGAGTAGCC-----------------------------------------------TCTTA--------TTATATAG-TATGTACTTCAT--AGTT------TCATAAAAATAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319479 64 - 1393929 CAGAGTACCTACAGTAGCC-----------------------------------------------TCTTA--------TTATACAG-TATGTACTGCATAAAGTT------TCATAAAAATAAAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1395567 64 - 15889662 CATAGTACCTAGAGTAGCA-----------------------------------------------CCTTA--------TTATACAG-TGTGTACTTCATAAAGTT------TCATAAAAATAAAT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 553572 63 - 10520994 GGcagtgcctagagcagca-----------------------------------------------cctta---------tatacag-tatgtacttaataaagtt------tcataaaaatggat i proCoq1.NW_012147189v1 C 0 C 0 s mm10.chr13 76430464 64 + 120421639 GGTAGTTCATGGAACAGCG-----------------------------------------------GCTAA---------TAT-TAA-TGCATACTTAATGAAGTT----AACCAGAAGAGTAAAT i mm10.chr13 C 0 I 175 s canFam3.chr3 14294054 63 + 91889043 GACAGTGCCTAGGACAGCA-----------------------------------------------CATTA---------TGTATAA-TATGTAGTTAATAAAGTT------TCATGAAAATGGGT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1209397 126 - 11655695 AGCAGTGCCTAGAGCAGGAGTATTTAAAGTAGATATAAATATATGAATTAAAACATGAAGGGTTTTCCTTAAAGTGTGATTGTAAAGCTATTTATATTTTAAACTTTTCAATTCATAGAAATGAAT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84809342 283 + 108143057 I e otoGar3.GL873536 1274228 538 - 29863360 I a score=45737.000000 s hg38.chr5_GL383530v1_alt 13422 11 + 101241 ------------------------------------------------------------gaatTT-----------------------------------AAAAC------------------------- s panTro5.chr5 20242239 11 + 181907262 ------------------------------------------------------------gaatTT-----------------------------------AAAAC------------------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259551 11 + 183735486 ------------------------------------------------------------gaatTT-----------------------------------AAAAC------------------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745393 11 - 13748885 ------------------------------------------------------------gaatTT-----------------------------------AAAAC------------------------- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53780692 11 - 163208435 ------------------------------------------------------------gaatTT-----------------------------------AAAAG------------------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808027 11 - 180051392 ------------------------------------------------------------GAATTT-----------------------------------AAAAC------------------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912447 11 - 181584905 ------------------------------------------------------------GAATTT-----------------------------------AAAAC------------------------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135298 11 - 8785636 ------------------------------------------------------------GAATTT-----------------------------------AAAAC------------------------- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1603572 11 + 27333823 ------------------------------------------------------------GAATTT-----------------------------------AAAAC------------------------- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1873994 9 - 91010382 ------------------------------------------------------------GAATTT-------------------------------------AAC------------------------- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985071 11 + 5179401 ------------------------------------------------------------GAATTT-----------------------------------AAAAC------------------------- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7690814 11 - 21726897 ------------------------------------------------------------GAATTT-----------------------------------AAAAC------------------------- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509097 12 + 204313951 ------------------------------------------------------------GAATTT----------------------------------ACAAAC------------------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955066 12 + 71252344 ------------------------------------------------------------GAATTT----------------------------------TAAAAC------------------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319543 12 - 1393929 ------------------------------------------------------------GAATTT----------------------------------AAAAAC------------------------- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1395631 12 - 15889662 ------------------------------------------------------------GAATTT----------------------------------AAAAAC------------------------- i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 553635 11 - 10520994 ------------------------------------------------------------gaatTT-----------------------------------AAAAC------------------------- i proCoq1.NW_012147189v1 C 0 I 216 s canFam3.chr3 14294117 11 + 91889043 ------------------------------------------------------------AAATTA-----------------------------------AAAAC------------------------- i canFam3.chr3 C 0 I 150 s dasNov3.JH570378 1209523 131 - 11655695 GTAATCATTTTGATTTTTCAAAACTTTTATACTTTTATTATTTTATTGTTGACAATTTTTAAATTTGCCATATTCTATTATAGCACCTTTTTGGAGTTTTAAAAACTGATTAGGAATCTGCACTGAAGAAC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84809342 283 + 108143057 I e mm10.chr13 76430528 175 + 120421639 I e otoGar3.GL873536 1274228 538 - 29863360 I a score=82278.000000 s hg38.chr5_GL383530v1_alt 13433 12 + 101241 AAAGTACCCC-CC- s panTro5.chr5 20242250 13 + 181907262 AAAGTGCCCCGCC- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259562 13 + 183735486 AAAGTACCCCGCC- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745404 12 - 13748885 AAAGTACCCC-CC- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53780703 12 - 163208435 AAAATACCCC-CC- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808038 11 - 180051392 AAAGTACCC--CC- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912458 11 - 181584905 AAAGTACCC--CC- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135309 11 - 8785636 AAAGTACCC--CC- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1603583 11 + 27333823 AAAGTACCC--CC- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874003 11 - 91010382 AAAGTACCC--CC- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985082 11 + 5179401 AAAGTACCC--CC- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7690825 11 - 21726897 AAAGTACCC--CC- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509109 12 + 204313951 AAAGTACCCC-CC- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955078 12 + 71252344 AAAGTACCCC-CC- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319555 12 - 1393929 AAACGACCCC-CC- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1395643 12 - 15889662 AAAGTACCCC-CC- i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14294278 11 + 91889043 ATAGCATCT--CC- i canFam3.chr3 I 150 I 59 s dasNov3.JH570378 1209654 12 - 11655695 AAAGTGCCA--AAA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84809342 283 + 108143057 I e proCoq1.NW_012147189v1 553646 216 - 10520994 I e mm10.chr13 76430528 175 + 120421639 I e otoGar3.GL873536 1274228 538 - 29863360 I a score=6862.000000 s hg38.chr5_GL383530v1_alt 13445 1 + 101241 A s panTro5.chr5 20242263 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259575 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745416 1 - 13748885 A i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53780715 1 - 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808049 1 - 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912469 1 - 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135320 1 - 8785636 A i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1603594 1 + 27333823 A i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874014 1 - 91010382 A i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985093 1 + 5179401 A i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7690836 1 - 21726897 A i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509121 1 + 204313951 C i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 44955090 1 + 71252344 C i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107830v1 319567 1 - 1393929 C i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1395655 1 - 15889662 A i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84809625 1 + 108143057 a i micMur3.chr12 I 283 C 0 s proCoq1.NW_012147189v1 553862 1 - 10520994 A i proCoq1.NW_012147189v1 I 216 C 0 s canFam3.chr3 14294348 1 + 91889043 A i canFam3.chr3 I 59 C 0 s dasNov3.JH570378 1209666 1 - 11655695 A i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76430528 175 + 120421639 I e otoGar3.GL873536 1274228 538 - 29863360 I a score=841472.000000 s hg38.chr5_GL383530v1_alt 13446 62 + 101241 ------AAA-----TTAGAATCTCTGGTTGGTTTAGAA-TAAAAGATGGTAAATAAT-TTTATAGTAT-AAAATA--T s panTro5.chr5 20242264 62 + 181907262 ------AAA-----TTAGAATCTCTGGTTGGTTTAGAA-TAAAAGATGGTAAATAAT-TTTATAGTGT-AAAATA--T i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259576 62 + 183735486 ------AAA-----TTAGAATCTCTGGTTGGTTTAGAA-TAAAAGATGGTAAATAAT-TTTATAGTGT-AAAATA--T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745417 62 - 13748885 ------AAA-----TTAGAATCTCTGGTTGGTTTAGAA-TAAAAGATGGTAAATAAT-TTTATAGTAT-AAAATA--T i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53780716 64 - 163208435 ------AAA-----TTAGAATCTCTGGTTGGTTTAGAA-TAAAAGATGGTAAATAAT-TTTATAGCAT-AAAATAGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808050 62 - 180051392 ------AAA-----TTAGAATATCTGGTTGGTTTAGAA-TAAAGGATGATAAATAAT-TTTATAGTAT-AAAATA--T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912470 62 - 181584905 ------AAA-----TTAGAATATCTGGTTGGTTTAGAA-TAAAGGATGATAAATAAT-TTTATAGTAT-AAAATA--T i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135321 62 - 8785636 ------AAA-----TTAGAATATCTGGTTGGTTTAGAA-TAAAGGATGATAAATAAT-TTTATAGTAT-AAAATA--T i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1603595 62 + 27333823 ------AAA-----TTAGAATATCTGGTTGGTTTAGAA-TAAAGGATGATAAATAAT-TTTATAGTAC-AAAATA--T i cerAty1.NW_012002401v1 C 0 I 317 s chlSab2.chr4 1874015 62 - 91010382 ------AAA-----TTAGAATATCTGGTTGGTTTAGAA-TAAAGGATGATAAATAAT-TTTATAGTAT-AAAATA--T i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985094 62 + 5179401 ------AAA-----TTAGAATATCTGGTTGGTTTAGAA-TAAAGGATGATAAATAAT-TTTATAGTAT-AAAATA--T i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7690837 62 - 21726897 ------AAA-----TTAGAATATCTGGTTGGTTTAGAA-TAAAAGATGATAAATAAT-TTTATAGTAT-AAAATA--T i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509123 58 + 204313951 ------AAA-----TTAGAATATCTGGTTGGTTTATAA-TAAAGTATG----ATAAT-TTTATACTAT-AAAATA--T i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 44955092 58 + 71252344 ------AAA-----TTAGAATATCTAGTTGGTTTATAA-TAAAATATG----ATAAT-TTTATAGTAT-AAAGTA--T i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107830v1 319568 58 - 1393929 ------AAA-----TTAGAATATCTGTTTGGTTtataa-taaaatatg----ataat-tttatagtat-aaaata--T i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1395656 58 - 15889662 ------AAA-----TTAGAATATCTGGTTCGTatataa-taaaatatg----ataat-tttatagtat-aaaata--T i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84809626 63 + 108143057 ------aaa-----ttggaatatcttgttggcttaGAa-taaaatataaaaaataatatttatagtat-aaaata--t i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 553863 63 - 10520994 ------AAA-----TTGGAATGTCTTGTTGGCTTAGAA-TAAAATATGAAAAATAATATTTATAGTAT-AAAATA--T i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1274766 64 - 29863360 ------AAA-----TTGGAATGTCTTG-CGGTTTACAATTAAAGTATGAAAAATAATATTCATAGTATAAAAATA--T i otoGar3.GL873536 I 538 C 0 s canFam3.chr3 14294349 63 + 91889043 ------AAA-----ATGGAATATCTGGTTGATTTGGAA-TCAAGTAAAATAAATAATACTTAGAAGAT-AAAATA--T i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1209667 71 - 11655695 GAAAAAAAACCACCCTGGAATATCTAGTTGGTTTAGAG-TAAAGCA---GAAATAATATTTGTAGTAT-AAAATA--T i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76430528 175 + 120421639 I a score=331423.000000 s hg38.chr5_GL383530v1_alt 13508 35 + 101241 CCTA----CTAGGA---------TATTTTCTAATATGTAGTCTC------TCTC-- s panTro5.chr5 20242326 35 + 181907262 CCTA----CTAGGA---------TATTTTCTAATATGTAGTCTC------TCTC-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259638 35 + 183735486 CCTA----CTAGGA---------TATTTTCTAATATGTAGTCTC------TCTC-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745479 34 - 13748885 CCT-----CTAGGA---------TATTTTCTAATATGTAGTCTC------TCTC-- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53780780 35 - 163208435 TCTAATATGTAGGA---------TATTTTCTAATATGTAG----------TCTC-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808112 35 - 180051392 CCTA----CTAGGA---------TACTTTCTAATATGTAGTCTC------TCTC-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912532 35 - 181584905 CCTA----CTAGGA---------TATTTTCTAATATGTAGTCTC------TCTC-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135383 35 - 8785636 CCTA----CTAGGA---------TATTTTCTAATATGTAGTCTC------TCTC-- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1603974 35 + 27333823 CCTA----CTAGGA---------TATTTTCTAATATGTAGTCTC------TCTC-- i cerAty1.NW_012002401v1 I 317 C 0 s chlSab2.chr4 1874077 35 - 91010382 CCTA----CTAGAA---------TATTTTCTAATATGTAGTCTC------TCTC-- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985156 35 + 5179401 CCTA----CTAGGA---------TATTTTCTAATGTGTAGTCTC------TCTC-- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7690899 35 - 21726897 CCTA----CTAGGA---------TATTTTCTAATATGTAGTCTC------TCTC-- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509181 31 + 204313951 CTCA----CTAGGA---------TATTTTTAAGTATGGAGTCTC------------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955150 30 + 71252344 CTCA----CTAGGA---------TATTTTTAAGTAT-GACTCTC------------ i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319626 32 - 1393929 CTCA----CTAGGA---------TATTTTTAAGTAT-GAGTCTCTT---------- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1395714 35 - 15889662 CTCA----CTAGGA---------TATTTTTAAGTATGGAGTCTC--TCTC------ i aotNan1.NW_018506370v1 C 0 I 33 s micMur3.chr12 84809689 35 + 108143057 aCTA----CTAGGA---------TATTTTGTAATATGTGGTTTC------TCTC-- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 553926 35 - 10520994 ACTA----GTAGGA---------TATTTTCTAATATGTGATCTC------TCTC-- i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1274830 44 - 29863360 ACTA----CTAGGAATCGGCCTCACTCTTCTAGTATGCAGTTTC------TCTC-- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14294412 28 + 91889043 CCTA----GTAGGA---------TATTTTCTAGCAT-TAATC-------------- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1209738 37 - 11655695 CCTT----CTGGGT---------TGTATTCTAATATGTGTTCTT------GCTCTC i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76430528 175 + 120421639 I a score=222754.000000 s hg38.chr5_GL383530v1_alt 13543 16 + 101241 AATTAAAATGAAGAAA s panTro5.chr5 20242361 16 + 181907262 AATTAAAATGAAGAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259673 16 + 183735486 AATTAAAATGAAGAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745513 16 - 13748885 AATTAAAATGAAGAAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53780815 16 - 163208435 AATTAAAATGAAGAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808147 16 - 180051392 AATTAAAATGAAGAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912567 16 - 181584905 AATTAAAATGAAGAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135418 16 - 8785636 AATTAAAATGAAGAAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604009 16 + 27333823 AATTAAAATGAAGAAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874112 16 - 91010382 AATTAAAATTAAGAAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985191 16 + 5179401 AATTACAATGAAGAAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7690934 16 - 21726897 AATTAAAATGaagaaa i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509212 14 + 204313951 --TCAAAGTGAAgaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955180 14 + 71252344 --TCAAAGTGaagaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319658 14 - 1393929 --TCAAAGTGAagaaa i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84809724 16 + 108143057 AATTAAAATGAAGAAA i micMur3.chr12 C 0 I 25 s proCoq1.NW_012147189v1 553961 16 - 10520994 AATTAAAATGAAGAAA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1274874 16 - 29863360 AATTATAATGAAGGAA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14294440 16 + 91889043 AATCTGAAGGAAGAAA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1209775 16 - 11655695 AATTAAAATGAAAACA i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76430528 175 + 120421639 I e aotNan1.NW_018506370v1 1395749 33 - 15889662 I a score=41754.000000 s hg38.chr5_GL383530v1_alt 13559 4 + 101241 AGAG s panTro5.chr5 20242377 4 + 181907262 AGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259689 4 + 183735486 AGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745529 4 - 13748885 AGAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53780831 4 - 163208435 AGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808163 4 - 180051392 GGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912583 4 - 181584905 GGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135434 4 - 8785636 GGAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604025 4 + 27333823 GGAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874128 4 - 91010382 GGAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985207 4 + 5179401 GGAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7690950 4 - 21726897 ggag i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509226 4 + 204313951 ggag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955194 4 + 71252344 ggag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319672 4 - 1393929 ggag i cebCap1.NW_016107830v1 C 0 C 0 s proCoq1.NW_012147189v1 553977 4 - 10520994 GGGg i proCoq1.NW_012147189v1 C 0 I 111 s otoGar3.GL873536 1274890 4 - 29863360 GGAA i otoGar3.GL873536 C 0 I 1 s dasNov3.JH570378 1209791 4 - 11655695 AAAA i dasNov3.JH570378 C 0 I 31 e canFam3.chr3 14294456 0 + 91889043 C e micMur3.chr12 84809740 25 + 108143057 I e mm10.chr13 76430528 175 + 120421639 I e aotNan1.NW_018506370v1 1395749 33 - 15889662 I a score=15834.000000 s hg38.chr5_GL383530v1_alt 13563 3 + 101241 GTG s panTro5.chr5 20242381 3 + 181907262 GTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259693 3 + 183735486 GTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745533 3 - 13748885 GTG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53780835 3 - 163208435 GTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808167 3 - 180051392 GTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912587 3 - 181584905 GTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135438 3 - 8785636 GTG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604029 3 + 27333823 GTG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874132 3 - 91010382 GTG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985211 3 + 5179401 GTG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7690954 3 - 21726897 gta i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509230 3 + 204313951 cag i calJac3.chr2 C 0 I 14 s saiBol1.JH378106 44955198 3 + 71252344 cag i saiBol1.JH378106 C 0 I 14 s cebCap1.NW_016107830v1 319676 3 - 1393929 cag i cebCap1.NW_016107830v1 C 0 I 14 s otoGar3.GL873536 1274895 3 - 29863360 GTG i otoGar3.GL873536 I 1 I 3 e canFam3.chr3 14294456 0 + 91889043 C e micMur3.chr12 84809740 25 + 108143057 I e proCoq1.NW_012147189v1 553981 111 - 10520994 I e dasNov3.JH570378 1209795 31 - 11655695 I e mm10.chr13 76430528 175 + 120421639 I e aotNan1.NW_018506370v1 1395749 33 - 15889662 I a score=107048.000000 s hg38.chr5_GL383530v1_alt 13566 30 + 101241 GGTGgagagagagaggg--------------agagagagagaga------ s panTro5.chr5 20242384 30 + 181907262 GGTGgagagagagaggg--------------agagagagagaga------ i panTro5.chr5 C 0 I 2 s panPan2.chr5 20259696 30 + 183735486 GGTGgagagagagaggg--------------agagagagagaga------ i panPan2.chr5 C 0 I 2 s gorGor5.CYUI01014999v1 4745536 25 - 13748885 GGTGgagagagagag-------------------gagagagaga------ i gorGor5.CYUI01014999v1 C 0 I 2 s nomLeu3.chr2 53780838 20 - 163208435 GGTGgagaga------------------------gagagagaga------ i nomLeu3.chr2 C 0 I 2 s rheMac8.chr6 87808170 40 - 180051392 GGTGgagagagagagag--agagagac--agagacagagacaga------ i rheMac8.chr6 C 0 I 2 s macFas5.chr6 87912590 26 - 181584905 GGTGgagagagagagag------------------agagacaga------ i macFas5.chr6 C 0 I 2 s macNem1.NW_012011400v1 1135441 38 - 8785636 GGTGGagagagagagag----agagac--agagacagagacaga------ i macNem1.NW_012011400v1 C 0 I 2 s cerAty1.NW_012002401v1 1604032 44 + 27333823 GGTGgagagagagagagagagagagacagagagacagagacaga------ i cerAty1.NW_012002401v1 C 0 I 2 s chlSab2.chr4 1874135 40 - 91010382 GGTGgagagagagagag----agagacagggagacagagacaga------ i chlSab2.chr4 C 0 I 2 s manLeu1.NW_012103732v1 1985214 40 + 5179401 GGTGgagagagagagag----agagacagagagacagagacaga------ i manLeu1.NW_012103732v1 C 0 I 2 s colAng1.NW_012115488v1 7690957 42 - 21726897 ggtagagagagagaaag--agagagacagagagacagagacaga------ i colAng1.NW_012115488v1 C 0 I 2 s calJac3.chr2 112509247 30 + 204313951 ggtggagaagaaaaggg--------------ggagagagagaga------ i calJac3.chr2 I 14 I 2 s saiBol1.JH378106 44955215 30 + 71252344 ggtggagaagaaaagga--------------ggagagagagaga------ i saiBol1.JH378106 I 14 I 2 s cebCap1.NW_016107830v1 319693 28 - 1393929 ggtggagaagaaaaggg--------------g--gagagagaga------ i cebCap1.NW_016107830v1 I 14 I 2 s aotNan1.NW_018506370v1 1395782 28 - 15889662 ggtggagaagaaaaggg--------------g--gagagagaga------ i aotNan1.NW_018506370v1 I 33 I 2 s otoGar3.GL873536 1274901 12 - 29863360 GTTTGTGTTAGT-------------------------------------- i otoGar3.GL873536 I 3 C 0 s canFam3.chr3 14294456 17 + 91889043 ---------------------------------ACGGAGTGTGTGTTAAT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84809740 25 + 108143057 I e proCoq1.NW_012147189v1 553981 111 - 10520994 I e dasNov3.JH570378 1209795 31 - 11655695 I e mm10.chr13 76430528 175 + 120421639 I a score=56463.000000 s hg38.chr5_GL383530v1_alt 13596 5 + 101241 agaCA s panTro5.chr5 20242416 5 + 181907262 agaca i panTro5.chr5 I 2 C 0 s panPan2.chr5 20259728 5 + 183735486 agaca i panPan2.chr5 I 2 C 0 s gorGor5.CYUI01014999v1 4745563 2 - 13748885 ag--- i gorGor5.CYUI01014999v1 I 2 C 0 s nomLeu3.chr2 53780860 5 - 163208435 agaCA i nomLeu3.chr2 I 2 C 0 s rheMac8.chr6 87808212 5 - 180051392 AGACA i rheMac8.chr6 I 2 C 0 s macFas5.chr6 87912618 5 - 181584905 agaca i macFas5.chr6 I 2 C 0 s macNem1.NW_012011400v1 1135481 5 - 8785636 AGACA i macNem1.NW_012011400v1 I 2 C 0 s cerAty1.NW_012002401v1 1604078 5 + 27333823 agaCA i cerAty1.NW_012002401v1 I 2 C 0 s chlSab2.chr4 1874177 5 - 91010382 agaca i chlSab2.chr4 I 2 C 0 s manLeu1.NW_012103732v1 1985256 5 + 5179401 agaca i manLeu1.NW_012103732v1 I 2 C 0 s colAng1.NW_012115488v1 7691001 5 - 21726897 agaca i colAng1.NW_012115488v1 I 2 C 0 s calJac3.chr2 112509279 5 + 204313951 ggaca i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 44955247 5 + 71252344 ggaca i saiBol1.JH378106 I 2 C 0 s cebCap1.NW_016107830v1 319723 5 - 1393929 gGACA i cebCap1.NW_016107830v1 I 2 C 0 s aotNan1.NW_018506370v1 1395812 5 - 15889662 gGACA i aotNan1.NW_018506370v1 I 2 C 0 s micMur3.chr12 84809765 5 + 108143057 AGACA i micMur3.chr12 I 25 C 0 s otoGar3.GL873536 1274913 5 - 29863360 GGGCA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14294473 5 + 91889043 AGACA i canFam3.chr3 C 0 C 0 e proCoq1.NW_012147189v1 553981 111 - 10520994 I e dasNov3.JH570378 1209795 31 - 11655695 I e mm10.chr13 76430528 175 + 120421639 I a score=809316.000000 s hg38.chr5_GL383530v1_alt 13601 58 + 101241 ACAAAAAAGGAAATACGAGGATTTAACTAGTCAGAATTTAAGCTGTAAGTATGAAAAG s panTro5.chr5 20242421 58 + 181907262 acaaagaaggaaaTACGAGGATTTAACTAGTCGGAATTTAAGCTGTAAGTATGAAAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259733 58 + 183735486 acaaagaaggaaaTACGAGGATTTAACTAGTCGGAATTTAAGCTGTAAGTATGAAAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745565 58 - 13748885 acaaagaAGGAAATACGAGGATTTAACTAGTCAGAATTTAAGCTGTAAGTATGAAAAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53780865 58 - 163208435 ACAAAGAAGGAAATATGAGGATTTAACTAGTCAGAATTTAAGCTGTAAGTATGAAAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808217 58 - 180051392 ACGAAGAAGGAAATATGAGGATTTAACTAGTCAGAATTTAAGCTATAAGTATGAAAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912623 58 - 181584905 acaaagaaggaaaTATGAGGATTTAACTAGTCAGAATTTAAGCTATAAGTATGAAAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135486 58 - 8785636 ACAAAGAAGGAAATATGAGGATTTAACTAGTCAGAATTTAAGCTATAAGTATGAAAAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604083 58 + 27333823 ACCAAGAAGGAAATATGAGGATTTAACTAGTTAGAATTTAAGCTATAAGTACGAAAAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874182 58 - 91010382 acaaagaAGGAAATATGAGGATTTAACTAGTCAGAATTTAAGCTATAAGTACGAAAAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985261 58 + 5179401 acaaagaaggaaaTATGAGGATTTAACTAGTTAGAATTTAAGCTATAAGTACAAAAAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691006 58 - 21726897 acaaagaaggaaaTATGAGGATTTAACTAGTCAGAATTTAAGCTATAAGTACGAAAAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509284 58 + 204313951 acaaagaaggaaaTATGAGGATTTAGCTTGTCAGAATTTAAGCTATAAGCATGAGAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955252 58 + 71252344 acaaagaaggaaaTATGGGGATTTAACTTGTCAGAATTTAAGCTATATGCAGGAGAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319728 58 - 1393929 ACAAAGAAGGAAATATGAGGATTTAACTTGTCAGAATTTAAGCTATAAGCATGAGAAG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1395817 58 - 15889662 GCAAAGAAGGAAATGTGAGGACTTAACTTGTCAGAATTTAAGCTATAAGCATGAGAAG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84809770 58 + 108143057 ACAAAGAAGGAAATATGAAGATTTAAATGGTTAGAATGTAAGCGATAAATAAGAAAAG i micMur3.chr12 C 0 I 1 s otoGar3.GL873536 1274918 57 - 29863360 ATAAAGAAGGAAATAT-AGAATTTAATTGGTCAGAATATAAGGTATAAATATGAAAAG i otoGar3.GL873536 C 0 I 1 s canFam3.chr3 14294478 52 + 91889043 ACAAAGAA--AAATAT----ACTTAACTGGTCAGAAAATAAGCTATAAGCATGAAAAG i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1209826 58 - 11655695 ATAAAAAAGGCAATATTAGAATTTAACTGGTTATAAAGTAAGCCATAAGTATGTAAAG i dasNov3.JH570378 I 31 I 1 e proCoq1.NW_012147189v1 553981 111 - 10520994 I e mm10.chr13 76430528 175 + 120421639 I a score=1510398.000000 s hg38.chr5_GL383530v1_alt 13659 105 + 101241 AATG-------TGGATAATAAAAGG----AAGATAAGAGATTCTAA-----------AGGTAGAGGAATGTTTAGATTAAAC-CTAAAATGGCACACTGCTAAGACTTCAGTGTACATGACCAAGTTT s panTro5.chr5 20242479 105 + 181907262 AATG-------TGGATAATAAAAGG----AAGATAAGAGATTCTAA-----------AGGTAGAGGAATGTTTAGATTAAAC-CTAAAATGGCACACTGCTAAGACTTCAGTGTACATGACCAAGTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259791 105 + 183735486 AATG-------TGGATAATAAAAGG----AAGATAAGAGATTCTAA-----------AGGTAGAGGAATGTTTAGATTAAAC-CTAAAATGGCACACTGCTAAGACTTCAGTGTACATGACCAAGTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745623 105 - 13748885 AATG-------TGGATAATAAAAGG----AAGATAAGAGATTCTAA-----------AGGTAGAGGAATGTTTAGATTAAAC-CTAAAATGGCACACTGCTAAGACTTCAGTGTACATGACCAAGTTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53780923 105 - 163208435 AATG-------TGGATAATAAAAGG----AAGATAAGAGATTCTAA-----------AGGTAGAGGAATGTTTAGATTAAAC-CTAAAATGGCACACTGCTAAGGCTTCGGTGTACATGACCAAGTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808275 105 - 180051392 AATG-------TGGATGATAAAAAG----AAGATGAGGGATTCTAA-----------AGGTAGAGGAATGTTTAGATTAAGC-CTAAAATGGCACACTGCTAAGACTTCAGTGTACGTGACCAAGTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912681 105 - 181584905 AATG-------TGGATGATAAAAAG----AAGATGAGGGATTCTAA-----------AGGTAGAGGAATGTTTAGATTAAGC-CTAAAATGGCACACTGCTAAGACTTCAGTGTACGTGACCAAGTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135544 105 - 8785636 AATG-------TGGATGATAAAAAG----AAGATGAGGGATTCTAA-----------AGGTAGAGGAATGTTTAGATTAAGC-CTAAAATGGCACACTGCTAAGATTTCAGTGTACGTGACCAAGTTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604141 105 + 27333823 AATG-------TGGATGATAAAAAG----AAGATGAGGGATTCTAA-----------AGGTAGAGGAATGTTTAGATTAAGC-CTAAAATGGCACACTGCTAAGACTTCAGTGTACATGACCAAGTTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874240 105 - 91010382 AATG-------TGGATGATAAAAAG----AAGATGAGGGATTCTAA-----------AGGTAGAGGAATGTTTAGATTAAGC-CTAAAATGGCACACTGCTAAGACTTCAGTGTACATGACCATGTTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985319 105 + 5179401 AATG-------TGGATGATAAAAAG----AAGATGAGGGATTCTAA-----------AGGTAGAGGAATGTTTAGATTAAGC-CTAAAATGGCACACTGCTAAGACTTCAGTGTACATGACCAAGTTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691064 105 - 21726897 AATG-------TGGATGATAAAAAG----AAGATGAGGGATTCTAA-----------AGGTAGAGGAATGTTTAGATTAAGC-CTAAAATGGCACACTGCTAAGACTTCAGTGTACATGACCAAGTTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509342 105 + 204313951 AATA-------TGGATAATAAAAGG----AAGATGAGAGATTCTAA-----------AGGTAGAGGAATGTTTAGATTAAAT-CTAACATGGCACAATGCTAAGACTTCAGTGTACGTCATGAAGTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955310 105 + 71252344 ACTA-------TGGATAATAAAAGG----AAGATGAGAGATTCTAA-----------AGGTAGAGGAATATTTAGATTAAAC-CTAACATGGCACACTGCTAAGACTTCAGTATACGTGATGAAGTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319786 104 - 1393929 AATA-------TGGATAATAAAAGG----AAGATGAGAGATTCTAA-----------GGGTAGAGGAATATTTAGATTAAAC-CTAACATGGCACACTGCTAAGACTT-AGTGTACGTGTTGAAGTTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1395875 104 - 15889662 AATA-------TGGATAATAAAAGG----AAGATGAGAGATTCTAA-----------AGGTAT-GGAATGTTTAGATTAAAC-CTAACATGGCACACGGCTAAGACTTCAGTATACGTGATGAAGTTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84809829 105 + 108143057 AATG-------TGGATGATAAAAGG----AAGATATGAGATTCTAA-----------AGCTGGGGGGTTGTTTTGATTAAAC-CCAAAATGGTATGCTGTTAAGACTTCCATGTGCTTGACCAAGTTT i micMur3.chr12 I 1 I 19 s proCoq1.NW_012147189v1 554092 104 - 10520994 AATG-------TGAATGATGAAAGG----AAGGTATGAGATTCTAA-----------AGCTGGAGGGTTGTTTTGATTAAAC-CCAAAATGATGTGCTGCTAAGACTTCAGTGTACTTGACCAAGTT- i proCoq1.NW_012147189v1 I 111 C 0 s otoGar3.GL873536 1274976 89 - 29863360 AAAG-------TGGACGATAAAAGG----AAGGTGTGAGACTCTGA-----------AGGTGGAGGATTGTTTTGATTAAAC-ACAAAATGGCATACTGTGA----------------GGCCAAGTTT i otoGar3.GL873536 I 1 C 0 s canFam3.chr3 14294531 126 + 91889043 AATGTTTTCTTTTGATGATCAGAGATTCTAAAGGTAGAGAATCTAATCTAAATGTAGAGGTCGAGAATTGTTTTGATTAAATGTTAAGATGGTACATTGGCAGGACTTCAGTGCGCATGACCAAGT-- i canFam3.chr3 I 1 C 0 s dasNov3.JH570378 1209885 104 - 11655695 AATG-------TAGATGATAAAAGG----ATGATG-GAGAGTCTAA-----------AGGTAGAGGATTGTTTTGATTAAAC-ATAAAGTGGTGTGCTGCTTAGACTTCAGTATGCATGACTGAGTTT i dasNov3.JH570378 I 1 I 3 e mm10.chr13 76430528 175 + 120421639 I a score=110534.000000 s hg38.chr5_GL383530v1_alt 13764 10 + 101241 TAAACCTGCC----- s panTro5.chr5 20242584 10 + 181907262 TAAACCTGCC----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259896 10 + 183735486 TAAACCTGCC----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745728 10 - 13748885 TAAACCTGCC----- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781028 10 - 163208435 TAAATCTGCC----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808380 10 - 180051392 TAAATCTGCC----- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912786 10 - 181584905 TAAATCTGCC----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135649 10 - 8785636 TAAATCTGCC----- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604246 10 + 27333823 TAAATCTGCC----- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874345 10 - 91010382 TAAATCTGCC----- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985424 10 + 5179401 TAAATCTGCC----- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691169 10 - 21726897 TAAATCTGCC----- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509447 10 + 204313951 TAAATCCACC----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955415 10 + 71252344 TAAATCCACC----- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319890 10 - 1393929 TAAATCCACC----- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1395979 10 - 15889662 TAAATCCACC----- i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 554196 10 - 10520994 TGAATCTGCC----- i proCoq1.NW_012147189v1 C 0 I 10 s otoGar3.GL873536 1275065 9 - 29863360 -GAATCTGCC----- i otoGar3.GL873536 C 0 I 2 s dasNov3.JH570378 1209992 11 - 11655695 ----TATGCCTATGT i dasNov3.JH570378 I 3 C 0 e canFam3.chr3 14294657 0 + 91889043 C e micMur3.chr12 84809934 19 + 108143057 I e mm10.chr13 76430528 175 + 120421639 I a score=21146.000000 s hg38.chr5_GL383530v1_alt 13774 4 + 101241 --AGCC s panTro5.chr5 20242594 4 + 181907262 --GGCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259906 4 + 183735486 --GGCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745738 4 - 13748885 --GGCC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781038 4 - 163208435 --GGCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808390 4 - 180051392 --TGCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912796 4 - 181584905 --TGCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135659 4 - 8785636 --TGCC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604256 4 + 27333823 --TGCC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874355 4 - 91010382 --TGCC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985434 4 + 5179401 --TGCC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691179 4 - 21726897 --TGCC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509457 4 + 204313951 --TGCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955425 4 + 71252344 --TGCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319900 4 - 1393929 --TGTC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1395989 4 - 15889662 --TGCC i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1275076 4 - 29863360 --GGAA i otoGar3.GL873536 I 2 C 0 s dasNov3.JH570378 1210003 4 - 11655695 ATTA-- i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14294657 0 + 91889043 C e micMur3.chr12 84809934 19 + 108143057 I e proCoq1.NW_012147189v1 554206 10 - 10520994 I e mm10.chr13 76430528 175 + 120421639 I a score=778216.000000 s hg38.chr5_GL383530v1_alt 13778 52 + 101241 TATACACACCTA-----ACAAAGATCT--CACAAAAATAAGCCTGCACTGATTTGATAG s panTro5.chr5 20242598 52 + 181907262 TATACACACCTA-----ACAAAGATCT--CACAAAAATAAGCCTGCACTGATTTGATAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259910 52 + 183735486 TATATACACCTA-----ACAAAGATCT--CACAAAAATAAGCCTGCACTGATTTGATAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745742 52 - 13748885 TATACACACCTA-----ACAAAGATCT--CACAAAAACAAGCCTGCACTGATTTGATAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781042 52 - 163208435 TATACACACCTA-----ACAAAGATCT--CGCAAAAATAAGCCTGCACTGATTTGATAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808394 52 - 180051392 TATACACACCTA-----ACAAAGATCT--CACAAAAATAAGCCTGCACTGATTTGATAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912800 52 - 181584905 TATACACACCTA-----ACAAAGATCT--CACAAAAATAAGCCTGCACTGATTTGATAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135663 52 - 8785636 TATACACACCTA-----ACAAAGATCT--CACAAAAATAAGCCTGCACTGATTTGATAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604260 52 + 27333823 TATACACACCTA-----ACAAAGATCT--CACAAAAATAAGCCTGCACTGATTTGATAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874359 52 - 91010382 TATACATACCTA-----ACAAAGATCT--CACAAAAATAAGCCTGCACTGATTTGATAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985438 52 + 5179401 TATACACACCTA-----ACAAAGATCT--CACAAAAATAAGCCTGCACTGATTTGATAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691183 52 - 21726897 TATACACACCTA-----ACAAAGATCT--CACAAAAATAAGCCTGCACTGATTTGATAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509461 54 + 204313951 TATACACACCTA-----ACAAAGAACTCACACAAAAAAAGGCTGGCACTGATTTGATAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955429 43 + 71252344 TAT--------------ACAAAGAACT--CACAAAAATAAGCCTACACTGATTTGGTAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319904 52 - 1393929 TATACACACCTA-----ACAAAGAACT--CACAAAAATAAGCCTGCACTGATTTGATAG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1395993 48 - 15889662 TATACACACCTA-----AC----AACT--CACAAAAATAAGCCTGCACTGATTTAATAG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84809953 52 + 108143057 TATAGGCAGGTA-----ACAAAGATCT--CACAAAAATTAGCCTGCACTGATTTAATAG i micMur3.chr12 I 19 I 3851 s proCoq1.NW_012147189v1 554216 52 - 10520994 TATAGGCAGGTA-----ACAAAGATCT--CACAAAAATAAGCCTGCACTGATttaatag i proCoq1.NW_012147189v1 I 10 C 0 s otoGar3.GL873536 1275080 49 - 29863360 --------TGTACCACCGCAAAGATCT--CACAAAAACAAGCCTGCACTTACTTGGTAG i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14294657 52 + 91889043 TATATGCAGCTA-----ACAAAGATCT--TAGAAAAATAAGCCTGCGTGGATTTGATAG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1210007 52 - 11655695 TATATATAGCTA-----ACAAAACTCA--TACAAGATTTAGCTTGCCCTGACTTGATAG i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76430528 175 + 120421639 I a score=194715.000000 s hg38.chr5_GL383530v1_alt 13830 22 + 101241 ------ATATGTTTGCTGAATATTTTT--a s panTro5.chr5 20242650 22 + 181907262 ------ATCTGTTTGCTGAATATTTTT--A i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259962 22 + 183735486 ------ATCTGTTTGCTGAATATTTTT--A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745794 22 - 13748885 ------ATCTGTTTGCTGAATATTTTT--A i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781094 22 - 163208435 ------ATCTGTTTGCTGAATATTTTT--a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808446 22 - 180051392 ------ATCTGTTTGCCGAATATTTTT--C i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912852 22 - 181584905 ------ATCTGTTTGCCGAATATTTTT--c i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135715 22 - 8785636 ------ATCTGTTTGCCGAATATTTTT--C i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604312 22 + 27333823 ------ATCTGTTTGCCGAATATTTTT--C i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874411 22 - 91010382 ------ATCTGTTTGCCGAATATTTTT--c i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985490 22 + 5179401 ------ATCTGTTTGCCGAATATTTTT--C i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691235 22 - 21726897 ------ATCTGTTTGCTGAATATTTTT--C i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509515 22 + 204313951 ------ATCAATTTGCTGAATATTTTT--a i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955472 24 + 71252344 ------ATCAATTTGCTGAGTATTTTTTAa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319956 22 - 1393929 ------ATCAATTTGCTGAATATTTTA--A i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1396041 15 - 15889662 ------AT-------CTGAATATTTTT--A i aotNan1.NW_018506370v1 C 0 I 315 s proCoq1.NW_012147189v1 554268 22 - 10520994 ------atcagtctactgaatattttt--t i proCoq1.NW_012147189v1 C 0 I 1 s otoGar3.GL873536 1275129 22 - 29863360 ------GTAAGTCTACTGAATTTTTTT--T i otoGar3.GL873536 C 0 I 1 s canFam3.chr3 14294709 21 + 91889043 ------GTCAGTTTATCAAATattcaa--- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1210059 19 - 11655695 GTGGCAGTCCATTCAGCAA----------- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e mm10.chr13 76430528 175 + 120421639 I a score=760797.000000 s hg38.chr5_GL383530v1_alt 13852 57 + 101241 aaagtctgttgaatattcactatttgtcaaacactatcctagacaaataaggtaaag s panTro5.chr5 20242672 57 + 181907262 AAAGTCTGTTGAATATTCACTATTTGTCAAACACTATCCTAGACAAATAAGGTAAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20259984 57 + 183735486 AAAGTCTGTTGAATATTCACTATTTGTCAAACACTATCCTAGACAAATAAGGTAAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745816 57 - 13748885 AAAGTCTGTTGAATATTCACTATTTGTCAAACACTATCCTAGACAAATAAGGTAAAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781116 57 - 163208435 aaagtctgttgaatattcactatttgtcaaaaactatcctagacaaataaggtaaag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808468 56 - 180051392 AAAGTCTGTTGAATATTCACTAGTTGTCAAACACTATCCTAGACAAATAA-GTAAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912874 56 - 181584905 aaagtctgttgaatattcactatttgtcaaacactatcctagacaaataa-gtaaag i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135737 56 - 8785636 AAAGTCTGTTGAATATTCACTATTTGTCAAACACTATCCTAGACAAATAA-GTAAAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604334 56 + 27333823 AAAGTCTGTTGAATATTCACTATTTGTCAAACACTATCCTAGACAAATAA-GTAAAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874433 56 - 91010382 aaagtctgttgaacattcactatttgtcaaacactatcatagacaaataa-gtaaag i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985512 56 + 5179401 AAAGTCTGTTGAATATTCACTATTTGTCAAACACTATCCTAGACAAATAA-GTAAAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691257 56 - 21726897 AAAGTCTGTTGAATATTCACTATTTGTCAAACACTATCCTAGACAAATAA-GTAAAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509537 57 + 204313951 aaagtctgttgaatattcactatttgtcaaacagtatcctagtcaaataaggtaaag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955496 57 + 71252344 aaagtctgttgaatattcactatttgtcaaacagtatcctagtcaaataaggtaaag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 319978 57 - 1393929 AAAGTCTGTTAAATATTCATTATTTGTCAAACAGTATCCTAGTCAAATAAGGTAAAG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1396371 57 - 15889662 AAAGTCTGTTGAATATTCACAATTTGTCAAACAGTATCCTAGTCAAATAAGGTAATG i aotNan1.NW_018506370v1 I 315 C 0 s proCoq1.NW_012147189v1 554291 57 - 10520994 aaagtttattaaatattcactatttgttaaacactatcctagaaaattaatatagag i proCoq1.NW_012147189v1 I 1 C 0 s otoGar3.GL873536 1275152 57 - 29863360 TAAGTTTGCTGACTATTCACTATTTGTCAGACATTACCCTAGAAAATTATTATAGAG i otoGar3.GL873536 I 1 C 0 s canFam3.chr3 14294730 53 + 91889043 aaagtgttttgaatattcattgtttgtcag----tttcctaggtgactgaggtagag i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1210078 57 - 11655695 AAAGTTTATTGAATATTTGCTATTCCTCAAACACAATCCTGAGTGAATAAAGTGAAT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e mm10.chr13 76430528 175 + 120421639 I a score=1316205.000000 s hg38.chr5_GL383530v1_alt 13909 119 + 101241 catctaccctcaaaaggtccatagtgcagtgaggggaacaga--agcagaccagaaattacTGTCAAGGGCTTAGGGATGGATTGAAGTTCAGCCTTGGCCTCACTGCTCCACCCAAACCT s panTro5.chr5 20242729 119 + 181907262 CATCTACCCTCAAAAGGTCCGTAGTGCAGTGAGGGGGACAGA--AGCAGACCAGAAATTACTGTCAAGGGCTtagggatggattgaagttcagcctttgcctcactgctccacccaaacct i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260041 119 + 183735486 CATCTACCCTCAAAAGGTCCGTAGTGCAGTGAGGGGGACAGA--AGCAGACCAGAAATTACTGTCAAGGGCTtagggatggattgaagttcagcctttgcctcactgctccacccaaacct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745873 119 - 13748885 CATCTACCCTCAAAAGGTCCGTAGTGCAGTGAGGGGGACAGA--AGCAGACCAAAAATTACTGTCAAGGGCTtagggatggattgaagttcagccttggcctcactgctccacccaaacct i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781173 119 - 163208435 catctaccctcaaaaggcccgtagtgcagtgagggggacaga--agcagaccagaaattacTGCCGAGGGCTTAGGGATGGATTGGAGTTCAGCCTTGGCCTCATTGCTCCACCCAAACCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808524 106 - 180051392 CATCTACCCTCAAAAGGTCCATAGTGCAGTGAACGGGACAGA--AGCAGACCAGAAATTATTGTAGAGAGCTT-------------AGTTCAGCCTTTTCCTCACTGTTCTGCCCAAACCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87912930 106 - 181584905 catctaccctcaaaaggtccatagtgcagtgaacgggacaga--agcagaccagaaattaTTGTAGAGAGCTT-------------AGTTCAGCCTTTTCCTCACTGTTCTGCCCAAACCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135793 106 - 8785636 CATCTACCCTCAAAAGGTCCATAGTGCAGTGAACGGGACAGA--AGCAGACCAGAAATTATTGTAGAGAGCTT-------------AGTTCAGCCTTTTCCTCACTGTTCTGCCCAAACCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604390 106 + 27333823 CATCTACCCTCAAAAGGTCTATAGTGCAGTGAACGGGACAGA--AGCAGTCCAGAAATTATTGTAGAGAGCTT-------------agttcagccttggcctcactgttctgcccaaacct i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874489 106 - 91010382 catctaccctcaaaaggcccatagtgcagtgaatgggacaga--agcagaccagaaattaTTGTAGAGAGCTT-------------AGTTCAGCCTTGGCCTCACTGTTCTGCCCAAACCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985568 106 + 5179401 CATCTACCTTCAAAAGGTCCATAGTGCAGTGAACGGGACAGA--AGCAGACCAAAAATTATTGTAGAGAGCTT-------------agttcagccttggcctcactgttctgcccaaacct i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691313 106 - 21726897 CATCTACCCTCAAAAGGTCTATGGTGCAGTGAGCGGGACAGA--AGCAGACCAGAAATTACTGTAGAGAGCTT-------------agttcagccttggcctcactgttctgcccaaacct i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509594 119 + 204313951 catctaccctcaaaaggtccatagtgcagtgagggggacaga--agcagaacagaaattacTGTCGAGAGCGTAGGGATGGATTGAAGTTCAGCCTTGACCTCACTGTTCTGTCCAAACCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955553 119 + 71252344 catctaccctcaaaaggtccatagtacagtgagggggacaga--agcagaccagaaattacTGCCGAGAACATAGGGATGGATTGAAGTTCAGCCTTGACCTCACTGTTCTGTCCAAACCG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 320035 119 - 1393929 CATCTACCCTCAAAAGGTCCATAGTGCAGTGAGGGGGACAGA--AGCAGACCAGAAATTACTGTCGAGAGCGtagagatggattgaagttcacccttgacctcactgttctgtccaaaccg i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1396428 119 - 15889662 CATCTACCCTCAAAAGGTCCATAGTGTAGTGAGGGGGACAGA--AGCAGATCAGAAATTACTGTCGAGAGCGtagagatggattgaagttcagccttgacctcactgctctgtccaaaccg i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 554348 121 - 10520994 catctgccctcaaaaggttcatagtgtggagggggagacagagaagtagaccaaaaattacaatCTAGGGCTtagggatacatcaaagttctgccttagtctcactattcagcccaaacct i proCoq1.NW_012147189v1 C 0 I 21 s otoGar3.GL873536 1275209 120 - 29863360 ATTCTACCCTCAAAAGGTCCATAGTATGGAGGGGGAGGCAGAGGAGTAGACCAGAAATTACAGTGCAGGGCTTAGGGGTGACTTGAAGTTCAGCATAGGCCTCACTCTTTAG-CCAAACCT i otoGar3.GL873536 C 0 I 1 s canFam3.chr3 14294783 121 + 91889043 catctgccttcagagggttcatgttgtgctgggagagatagagaagcagaccaaaaattacaatCTGGAGTTTAGGAATGCATCAACATTCAGCCTTGGCCTCACTATTCAGTCTGAACCT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e dasNov3.JH570378 1210135 0 - 11655695 C e mm10.chr13 76430528 175 + 120421639 I a score=234585.000000 s hg38.chr5_GL383530v1_alt 14028 21 + 101241 -TGAGAAGTTCTCAGCCTTTGA s panTro5.chr5 20242848 21 + 181907262 -tgagaagttctcagcctttga i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260160 21 + 183735486 -tgagaagttctcagcctttga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4745992 21 - 13748885 -tgagaagttctcagcctttga i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781292 21 - 163208435 -TGAGAAATTCTCAGCCTTTGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808630 21 - 180051392 -TAAGAAGTTctcagcctttga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913036 21 - 181584905 -TAAGAAGTTCTCAGCCTTTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135899 21 - 8785636 -TAAGAAGTTctcagcctttga i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604496 21 + 27333823 -taagaagttctcagcctttga i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874595 21 - 91010382 -TAAGAAGTTCTCAGCCTTTGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985674 21 + 5179401 -taagaagttctcagcctttga i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691419 21 - 21726897 -taagaagttctcagcctttga i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509713 21 + 204313951 -TGAGAAGTTCTCAGCCTTTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955672 21 + 71252344 -TGAGAAGTTCTCAGCCTTTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 320154 21 - 1393929 -tgagaagttctcagcctttga i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1396547 21 - 15889662 -tgagaagttctcagcctttga i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1275330 20 - 29863360 -CTATCAGGTCTGAGTCTATA- i otoGar3.GL873536 I 1 C 0 s canFam3.chr3 14294904 22 + 91889043 GCTGTCAGGTCTGAGCCTTTGG i canFam3.chr3 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e proCoq1.NW_012147189v1 554469 21 - 10520994 I e dasNov3.JH570378 1210135 0 - 11655695 C e mm10.chr13 76430528 175 + 120421639 I a score=781675.000000 s hg38.chr5_GL383530v1_alt 14049 63 + 101241 -AAGCTCAAGAGCAAATGCCCACCTTCACTTTGTTTCTGCCATCCCTGAACTTGCGTGTGAACA s panTro5.chr5 20242869 63 + 181907262 -aagctcaagagcaaatgcccaccttcactttgtttctgccatccctgaacttgcgtgtgaaca i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260181 63 + 183735486 -aagctcaagagcaaatgcccaccttcactttgtttctgccatccctgaacttgcgtgtgaaca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746013 62 - 13748885 -aagctcaagagcaaatgcccaccttcactttgtttctgccat-cctgaacttgcgtgtgaaca i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781313 63 - 163208435 -AAGCTCGAGAGCAAATGCCCACCTTCACTTTGTTTCTGCCATCCCTGAACTTGTGTGTGAACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808651 63 - 180051392 -aagctcaagagcaaatgcccatcttagctttgtttctgccatccctgaacttgtatgtgaaca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913057 63 - 181584905 -AAGCTCAAGAGCAAATGCCCATCTTAGCTTTGTTTCTGCCATCCCTGAACTTGTATGTGAACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135920 63 - 8785636 -aagctcaagagcaaatgcccatcttagctttgtttctgccatccctgaacttgtatgtgaaca i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604517 63 + 27333823 -aagctcaagagcaaatgcccatcttaactttgtttctgccatccctgaacttgtatgtgaaca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874616 62 - 91010382 -AAGCTCAAGAGCAAATGCCCATCTTAACTTTGTTTCTGCCATCCCTGAACTTG-ATGTGAACA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985695 63 + 5179401 -aagctcaagagcaaatgcccatcttaactttgtttctgccatccctgaacttgtatgtgaaca i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691440 63 - 21726897 -aagcccaagagcaaatgcccatcttaactttgtttctgccatccctgaacttgtatgtaaaca i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509734 63 + 204313951 -AAGCTGAAGAGCAAATGCCCATCTCAACTTGGTTTCTGCCATCCCTGAACTTGCATGTGAACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955693 63 + 71252344 -AAGCTCAAGAGCAAATGCCTACCTCAACTTGGTTTCTGCCATCCCTGAACTTGCATGTGAACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 320175 63 - 1393929 -aagctcaagagcaaatgcccacctcaacttgctttctgccatccctgagcttgtgtgtaaaca i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1396568 63 - 15889662 -aagctcaagagcaaatgcccacctcaacttggtttctgccatccctgaacttgcgtgtgaaca i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 554490 63 - 10520994 -gagctcaaaaggaaatgtccactttaatattatctctgtcttccctgaactcatatgtgaaca i proCoq1.NW_012147189v1 I 21 C 0 s otoGar3.GL873536 1275350 60 - 29863360 -GCTCTCAAGAGCAAAAGTCCCTCTCAATATTGTTTCTGCCATCCCAGAACTC---TGTGAACA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14294926 62 + 91889043 ACAGCTCAAGAGGAAATACCTACCCTTAAA--GTGTCTGTCATCCCTGAACTTGTGCATGAATC i canFam3.chr3 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e dasNov3.JH570378 1210135 0 - 11655695 C e mm10.chr13 76430528 175 + 120421639 I a score=1423808.000000 s hg38.chr5_GL383530v1_alt 14112 110 + 101241 CCAGGTTAGCATCATATCTAATC--TATACTACT------------ACATCTCTTATGTGTGCAAGGCATGATTCTCAAACTTAAGGTCAGTATCTGAATATCAGCTTTTAAATGCAGGTAAGC s panTro5.chr5 20242932 110 + 181907262 ccaggttagcatcatatctaatc--tatactact------------acatctcttatgtgtgcaaggcatgattctcaaacttaaggtcagtatctgaatatcagcttttaaatgcaggtaagc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260244 110 + 183735486 ccaggttagcatcatatctaatc--tatactact------------acatctcttatgtgtgcaaggcatgattctcaaacttaaggtcagtatctgaatatcagcttttaaatgcaggtaagc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746075 109 - 13748885 ccaggttagcatcatatctaatc---acactact------------acatctcttatgtgtgcaaggcatgattctcaaacttaaggtcagtatctgaatatcagcttttaaatgcaggtaagc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781376 110 - 163208435 CCAGGTTAGCATCATATTTAATC--TATACAACT------------ACATCTCTTATGTGTGCAAGGCATGATACTCAAACTTAAGGTCAGTATCTGAATATCAACTTCTATATGCAGGTAAGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808714 104 - 180051392 ccaggttagcaccatacttaatc--tatacaact------------atatctcttatgtgtgcaaggcatgatactc------aaagttagtatctgaatgttaaattttaaatgcaggtaagc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913120 104 - 181584905 CCAGGTTAGCACCATACTTAATC--TATACAACT------------ATATCTCTTATGTGTGCAAGGCATGATACTC------AAAGTTAGTATCTGAATGTTAAATTTTAAATGCAGGTAAGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1135983 110 - 8785636 ccaggttagcaccatacttaatc--tatacaact------------atatctcttatgtgtgcaaggcatgatactcaaacttaaagttagtatctgaatgttaaattttaaatgcaggtaagc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604580 110 + 27333823 ccaggttagcaccatacttaatc--tatacaact------------atatctcttatgtgtgcaaggcatgatactcaaacttaaagttagtatctgcatgttaaattttaaatgcaggtaagc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874678 110 - 91010382 CCAGGTTAGCACCATACTTAATC--TATACAACT------------ATATCTCTTATGTGTGCAAGGCATGATACTCAAACTTAAAGTTAGTATCTGAATGTTAAATTTTAAATGCACGTAAGC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985758 110 + 5179401 ccaggttagcaccatacttaatc--tatacaact------------atatctcttatgtgtgcaaggcatgatactcaaacttaaagttagtatctgcatgttaaattttaaatgcaggtaagc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691503 110 - 21726897 ccagcttagcaccatacctaatc--tatacaact------------atatctcttacatgtgcaaggcaggatactcaaacttaaagttagtatctgaatgtcaaattttaaatgcaggtaagc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509797 110 + 204313951 CCAGGTTAGCATCATATCTAATC--TATACAACT------------ACATCTCTTATGTGTACAAGGCATAATACTCAAACTTAAGGTTACTATCTGAATGTCTACTTTTAAATGCAGGTAAAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955756 108 + 71252344 CCAGGTTAGCATCATATCTAATC--TATACAACT------------ACATCTC--ATGTGTGCAAGGCATGATACTCAAACTTAAAGTTACTATCTGAATGTCAACTTTTAAATGCAGGTAAAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 320238 108 - 1393929 ccaggttagcataatatctaatc--tatacaact------------acatctc--acgtgtgcaaggcatgacactcaaacttaaggttactatctgaatgtcaacttttaaatgcaggtaaac i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1396631 110 - 15889662 ccaggttagcatcatatctaatc--tatacaact------------acatctcttatgtgtgcaaggcatgatactcaaacttaaggttactatctgaatgtcaacttttaaatgcaggtaaac i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 554553 110 - 10520994 ccaggttagcatcatatctaatc--tatacaact------------acatctcttacatatgcaaggtatgacattcaaacttgggattaatgtttgaatgttaacttttaaatgtaggtaaac i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1275410 109 - 29863360 CAAGGTTGGCCTCATATCTCATC--TGTTCAGCT------------ACATCTCTTATAGAT-CAAGGTATGACATCCAAACTTGAGATTAATATTTGAATATTAACTTGTAAATGTAGATAAGC i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14294988 109 + 91889043 CCAGGTTAGCATCATATCTAATC--TACACAAAA------------GTATCTCTTAAGTTTGCCAGGTATAACA-TCACTCTTAAGGTTAAAGTCTGAATGTTAACTCTTAAATACGGATAAGT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1210135 124 - 11655695 CCAGATTGACATCatatctaattgatatataattgatatctaattgatatGTTGTATATCAGTTAGGCATGACATTCAAACTTAAGGTTACTATCTGAAGGTTAACTTTGAATTATAGGTAAGC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e mm10.chr13 76430528 175 + 120421639 I a score=284972.000000 s hg38.chr5_GL383530v1_alt 14222 21 + 101241 ATTGTAGATATAAC---CTAAAAT s panTro5.chr5 20243042 21 + 181907262 attgtagatataac---ctaaaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260354 21 + 183735486 attgtagatataac---ctaaaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746184 21 - 13748885 attgtagatataac---ctaaaat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781486 21 - 163208435 ATTGTAGATATAAT---CTAAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808818 21 - 180051392 attgtagatatatc---ctaaaat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913224 21 - 181584905 ATTGTAGATATATC---CTAAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136093 21 - 8785636 attgtagatatatc---ctaaaat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604690 21 + 27333823 attgtagatatatc---ctaaaat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874788 21 - 91010382 ATTGTAGATATATC---CTAAAAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985868 21 + 5179401 attgtagatatatc---ctaaaat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691613 21 - 21726897 attgtagatatatc---ctaaaat i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112509907 21 + 204313951 ATTGTAGATATAAC---CTAAAAT i calJac3.chr2 C 0 I 199 s saiBol1.JH378106 44955864 21 + 71252344 ATTGTAGATATAAC---CTAAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 320346 21 - 1393929 attgtagatataac---ctaaaat i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1396741 21 - 15889662 attgtagatataac---ctaaaat i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 554663 21 - 10520994 attgtatatataac---ctaaaat i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1275519 21 - 29863360 TTTGTAGATATAAC---CTAACAT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76430703 24 + 120421639 ATTGTGAATCTTACTTTTTGAGAT i mm10.chr13 I 175 C 0 s canFam3.chr3 14295097 20 + 91889043 GTTGTACATATAAT---TTAAAT- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1210259 19 - 11655695 ATTGCAAATGTAAC---AGGAG-- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I a score=570686.000000 s hg38.chr5_GL383530v1_alt 14243 42 + 101241 GAAAATAGCCTTATGTTATTTTTATGTCAAATGTTGAATTCC s panTro5.chr5 20243063 42 + 181907262 gaaaataggcttatgttatttttatgtcaaaTGTTGAAttcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260375 42 + 183735486 gaaaataggcttatgttatttttatgtcaaatgttgaattcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746205 42 - 13748885 gaaaatagccttatgttatttttatgtcaaaTGTTGAAttcc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781507 42 - 163208435 GAAAATAGCCTTATGTTATTTTTAGGTCAAATGTTGAATTCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808839 42 - 180051392 gaaaatagccttatattctttttatgttaaaTGTTGAAttcc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913245 42 - 181584905 GAAAATAGCCTTATATTCTTTTTATGTTAAATGTTGAATTCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136114 42 - 8785636 gaaaatagccttatattctttttatgttaaaTGTTGAAttcc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604711 42 + 27333823 gaaaatagccttatattctttttatgttaaaTGTTCAAttcc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874809 42 - 91010382 GAAAATAGCCTTATATTCTTTTTATGTTAAATGTTGAATTCC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985889 42 + 5179401 gaaaatagccttatattctttttatgttaaaTGTTGAAttcc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691634 42 - 21726897 gaaaataggcttatattctttttatgttaaaTGTTGAAttcc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112510127 42 + 204313951 aaaaaTAGCCTTATGTGCTTTTTATGGTGAATGCTGAATTCT i calJac3.chr2 I 199 C 0 s saiBol1.JH378106 44955885 42 + 71252344 GAAAATAGTCTTATGTGCTTTTTATGTTGAATGCTGAATTCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 320367 42 - 1393929 gaaaatagccttatgtgctttttatgttgaaTGCTGAAttcc i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1396762 42 - 15889662 gaaaatagccttatgtgctttttatgttgaaTGCTGAATTCC i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 554684 42 - 10520994 caaaatctccttatattctctttatattgaaTATTGAATTCC i proCoq1.NW_012147189v1 C 0 I 2858 s otoGar3.GL873536 1275540 35 - 29863360 CAAAATCTCCTTATATTCCTTTT-------ATATTGAATTCC i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76430727 39 + 120421639 GAAATTATTCTTCTGT---TTTCATCTTGGATGTTAAATGCC i mm10.chr13 C 0 C 0 s canFam3.chr3 14295117 42 + 91889043 GCTAATATCCTCACATGCTTTTTATGTTGAATGTTAAATTTC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1210278 42 - 11655695 GAAAATACCCTTCTGTCTTTTTAATGTTGAATGTTCAATTCC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I a score=1150876.000000 s hg38.chr5_GL383530v1_alt 14285 108 + 101241 AAAAAAT------TAAATAGA-----AA------TA----GGC----------AAATTG-TACAAACATTAAGAGATACTGATTTCGCTAGTTAACTATATGAAGAACATTATATGTTTTCAATACA------TATACAGTTATAA- s panTro5.chr5 20243105 108 + 181907262 aaaaaat------taaataga-----aa------ta----ggc----------aaattg-tacaaacattaagagatactgatttcgctagttaactatatgaagaacattatatgttttcaataca------tatacgtttataa- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260417 108 + 183735486 aaaaaat------taaataga-----aa------ta----ggc----------aaattg-tacaaacattaagagatactgatttcgctagttaactatatgaagaacattatatgttttcaataca------tatacgtttataa- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746247 108 - 13748885 aaaaaat------taaataga-----aa------ta----ggc----------aaattg-tacaaacattaagagatactgatttcgctagttaactatatgaagaacattatatgttttcaataca------tatacagttataa- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781549 108 - 163208435 AAAAAAT------TATATAGA-----AA------TA----GGC----------GAATTG-TACAAACATTAAGAGATACTGCTTTCGCTAGATAACTATATGAAGAACATTATATGTTTTCAataca------tatacagttataa- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808881 108 - 180051392 aaaaaat------taaataga-----aa------ta----ggc----------aaattg-tacaaacactaagagatgctgctttcactagataactttatgaagaacattatatgttttcaataaa------tatacagttataa- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913287 108 - 181584905 AAAAAAT------TAAATAGA-----AA------TA----GGC----------AAATTG-TACAAACACTAAGAGATGCTGCTTTCACTAGATAACTTTATGAAGAACATTATATGTTTTCAataaa------tatacagttataa- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136156 108 - 8785636 aaaaaat------taaataga-----aa------ta----ggc----------aaattg-tacaaacactaagagatgctgctttcactagataactttatgaagaacattatatgttttcaataaa------tatacagttataa- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604753 108 + 27333823 aaaagat------taaataga-----aa------ta----ggc----------aaattg-tacaaacactaagagatgctgctttcactagataactttatgaggaacattatatgttttcaataaa------tatacagttataa- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874851 108 - 91010382 AAAAAAT------TAAATAGA-----AA------TA----GGC----------AAATTG-TACAAACACTAAGAGATGCTGCTTTCACTAGATAACTTTATGAAGAACATTGTATGTTTTCAataaa------tatacagttataa- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1985931 108 + 5179401 aaaaaat------taaataga-----aa------ta----ggc----------aaattg-tacaaacactaagagatgctgctttcactagataactttatgaggaacattatatgttttcaataaa------tatacagttataa- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691676 106 - 21726897 aaaaaat------taagtaga-----aa------ta----ggc----------aaattg-tacaaacactaagagatactgctttcactagataactttatgaagaacattatatgttttcaataaa------tat--agttataa- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112510169 102 + 204313951 AACAAAT------TAAATAGA-----AA------TA----GAC----------AACTTG-TACAAACACTAAGAGATACTGCTTTCACTAGATAAC---TTGAAGAACATTATGTTTTCTATAAATA------TACA--Cttat-a- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44955927 100 + 71252344 AA-AAAT------TAAATAGA-----AA------TA----GAC----------AACTTG-TACAAGCACTAAGAGATACTGCTTTCACTGGATAACTTTTTGAAGCACattatatattttctatata------cac------at-a- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 320409 105 - 1393929 aaaaaat------taaataga-----ag------ta----gac----------aacttg-tacaaatactaagagatactgctttcactagataactttatgaagagcattatatgttttCTATAAA------TATA--CACAT-A- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1396804 107 - 15889662 AAAAAAT------TAAATAGA-----AA------TA----GAC----------AACTTG-TACAAACACTAAGAGATACTGCTTTCACTAGATAACTTTATGAAGAACATtatatgttttctataaa------tatacgcttat-a- i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1275575 119 - 29863360 AAAAAAT------TAAATAAA-----CA------GA----GGATTAGATGAAGAAATAGTTATATCTATTAAGGGCTACTGTTTTTTCTCTATAACTTTTTGAAGCACATCGTATGtttttaataaa------caaatatttataa- i otoGar3.GL873536 C 0 I 116 s mm10.chr13 76430766 121 + 120421639 AAAAAATGTAAGGGAAAAAGA-----AA------TAGATGGAC----------AGGTTG-GATACATA-TGAGGGATAACATTGTGAGCTGGCAACTTTATGAAGCACAT-ATATGCTTTGGATAAACATGATTATACAGTTAAA-- i mm10.chr13 C 0 C 0 s canFam3.chr3 14295159 112 + 91889043 CAGTAAA------TAAATAGA-----AAAATAGTTG----GAC----------AAATAG-CACAAATACT--GATATGCTGTGTTATCTAGATGACTTTATGAAGaatattatatattttcaataaa------caaatatctataa- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1210320 112 - 11655695 AATTAAA------TAAATAGAGGGATAA------AA----TGA----------AAATTG-TACAAGTATTAAG--ATACTAAATTAGCCAGTTAACTTTAGGGAGAACTTCATATATTTTCAATAAG------CAAATGattataaa i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e proCoq1.NW_012147189v1 554726 2858 - 10520994 I a score=601367.000000 s hg38.chr5_GL383530v1_alt 14393 70 + 101241 AAATTATGAAATTTGTATGTAAATAA------ATATATATTATAAAAGTTTAAATGCCAATGCA----------------------------------A---AGAATAAT----------------------------------------------------AAT s panTro5.chr5 20243213 70 + 181907262 aaattatgaaatttgtatataaataa------atatatattataaaagtttaaatgccaatgca----------------------------------a---agaataat----------------------------------------------------aat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260525 70 + 183735486 aaattatgaaatttgtatataaataa------atatatattataaaagtttaaatgccaataca----------------------------------a---agaataat----------------------------------------------------aat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746355 70 - 13748885 aaattatgaaatttgtatataaataa------atatatattataaaagtttaaatgccaatgca----------------------------------a---agaataat----------------------------------------------------aat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781657 70 - 163208435 aaattataaaatttgtatataaataa------atatatattataAAAGTTTAAATGCCAATACA----------------------------------A---AGAATAAT----------------------------------------------------AAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87808989 68 - 180051392 aaattatacaatttgtatataaat--------atatacattataaaagtttaaatgccaataca----------------------------------a---agaatagt----------------------------------------------------aat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913395 68 - 181584905 aaattatacaatttgtatataaat--------atatacattataAAAGTTTAAATGCCAATACA----------------------------------A---AGAATGGT----------------------------------------------------AAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136264 68 - 8785636 aaattATACAATTTGTATATAAAT--------ATATACAttataaaagtttaaatgccaataca----------------------------------a---agaatagt----------------------------------------------------aat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604861 68 + 27333823 aaattATACAATTTGTATATAAAT--------ATATACGttataaaagtttaaatgccaataca----------------------------------a---agaatagt----------------------------------------------------aat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1874959 68 - 91010382 aaattatacaatttgtatataaat--------atatatgttataAAAGTTTAAATGCCAATACA----------------------------------A---AGAATAGT----------------------------------------------------AAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986039 68 + 5179401 aaattATACAATTTGTATATAAAT--------ATATACGttataaaagtttaaatgccaataca----------------------------------a---agaatagt----------------------------------------------------aat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691782 66 - 21726897 aaattATACAATTTGTATATAAAT--------ATAT--Gttataaaagtttaaatgccaataca----------------------------------a---agaataat----------------------------------------------------aat i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112510271 124 + 204313951 aaattatagaatttttatataaataa----aaatatacattataaaagtttaaatgctaataca----------------------------------a---acaataattttctttgtattagcatttaaacttttataatgtatatatttatttatataaaat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44956027 158 + 71252344 aaattatagaatttttatataaataa----atatatacattataaaagtttaaatGCTAATACAAAGAATAATTTTCTTTGTATATTCACTATTCATCA---AGAATAATTTTCTTTGTATTAGCATTTAAACTTTTATAATGTATATATTTGTTTACATAAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 320514 68 - 1393929 AAATTATAGAATTTTTATATAAAT--------ATATACATTATAAAAGTTTAAATGCTAATACA----------------------------------A---AGAATAAT----------------------------------------------------AAT i cebCap1.NW_016107830v1 C 0 I 59 s aotNan1.NW_018506370v1 1396911 122 - 15889662 aaattatagaatttttatataaat--------atataca-tataAAAGTTTAAATGCTAATACAAAG-------------------------------A---AGAAGAATTTTCTTTGTATTAGCATTTAAACTTTTATAATGTATATATTAATTTACATAAAAT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1275810 71 - 29863360 AAATTATTAAATTTATGTAGAACTAA----CTGTATACATTATAACATTTTAAGTATTAATACA----------------------------------C---AGAAGAAT----------------------------------------------------AG- i otoGar3.GL873536 I 116 C 0 s mm10.chr13 76430887 41 + 120421639 AAGTTACACA------GGAAAAAT--------GTGTAGAGTATAAAGG--------------------------------------------------A---AGATTA--------------------------------------------------------- i mm10.chr13 C 0 C 0 s canFam3.chr3 14295271 64 + 91889043 ----aatatagtttctatataaat--------atGTACATTGCAGAAATTTAAATAAGAATATATGA-------------------------------A---AGAAGAAT------------------------------------------------------- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1210432 79 - 11655695 aaattatacaatttatgtaaagataaatatatgtatacattataaaaatttaaataacaaaata----------------------------------aGGCAGAAAAAC----------------------------------------------------AAT i dasNov3.JH570378 C 0 I 14 e micMur3.chr12 84810005 3851 + 108143057 I e proCoq1.NW_012147189v1 554726 2858 - 10520994 I a score=41202.000000 s hg38.chr5_GL383530v1_alt 14463 4 + 101241 ACAG s panTro5.chr5 20243283 4 + 181907262 acag i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260595 4 + 183735486 acag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746425 4 - 13748885 acag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781727 4 - 163208435 ACAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809057 4 - 180051392 acag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913463 4 - 181584905 ACAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136332 4 - 8785636 acag i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604929 4 + 27333823 acag i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875027 4 - 91010382 ACAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986107 4 + 5179401 acag i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691848 4 - 21726897 acag i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112510395 4 + 204313951 ataa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44956185 4 + 71252344 ATAA i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1397033 4 - 15889662 ATAA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1275881 2 - 29863360 --AG i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76430928 2 + 120421639 --AG i mm10.chr13 C 0 C 0 s canFam3.chr3 14295335 4 + 91889043 GCAG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1210525 4 - 11655695 ACAA i dasNov3.JH570378 I 14 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e proCoq1.NW_012147189v1 554726 2858 - 10520994 I e cebCap1.NW_016107830v1 320582 59 - 1393929 I a score=1363532.000000 s hg38.chr5_GL383530v1_alt 14467 124 + 101241 ATGAGATCATAGTATATTTCCAACCTTTGTAGAATCGTTAAC-CCATA----------------------------------------------------------------------------------------------TAGAA----------AACTTTATGACTCAAAATTTCATGAGGAGGAAAAATTGGATAAAAATGTGTAATAACATATGTAAGAAA---TCT------------------ s panTro5.chr5 20243287 124 + 181907262 gtgagatcatagtatatttccaacctttgtagaatcgttAAC-CCATA----------------------------------------------------------------------------------------------TAGAA----------aactttatgactcaaaatttcatgaggaggaaaaattggataaaaatgtgtaataacatctgtaagaaa---tct------------------ i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260599 124 + 183735486 gtgagatcatagtatatttccaacctttgtagaatcgttAAC-CCATA----------------------------------------------------------------------------------------------TAGAA----------aactttatgactcaaaatttcatgaggaggaaaaattggataaaaatgtgtaataacatctgtaagaaa---tct------------------ i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746429 124 - 13748885 atgagatcatagtatatttccaacctttgtagaatcgttAAC-CCATA----------------------------------------------------------------------------------------------TAGAA----------aactttatgactcaaaatttcatgaggaggaaaaattggataaaaatgtgtaataacatctgtaagaaa---tct------------------ i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781731 124 - 163208435 ATGAGATCATAGTATATTTCCAACCTTTGTAGAATTGTTAAC-CCATA----------------------------------------------------------------------------------------------TAGAA----------AACTTTATGACTCAAAATTTCATGAGGAGGAAAAATTGGATAAAAATGTGTACTAACATCTATAAGAAA---TCT------------------ i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809061 124 - 180051392 atgagatcgtagtatatttcaaacctttgtagaattgttAAC-CTATA----------------------------------------------------------------------------------------------TAGAA----------aactttatgactcaaaatttcatgaggaggaaaacttgcataaaaatgtgtaataccatctataagaaa---tct------------------ i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913467 124 - 181584905 ATGAGATCGTAGTATATTTCAAACCTTTGTAGAATTGTTAAC-CTATA----------------------------------------------------------------------------------------------TAGAA----------AACTTTATGACTCAAAATTTCATGAGGAGGAAAACTTGCATAAAAATGTGTAATACCATCTATAAGAAA---TCT------------------ i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136336 124 - 8785636 atgagatcgtagtatatttcaaacctttgtagaattgttAAC-CTATA----------------------------------------------------------------------------------------------TAGAA----------aactttatgactcaaaatttcatgaggaggaaaacttgcataaaaatgtgtaataccatctataagaaa---tct------------------ i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1604933 124 + 27333823 atgagatcgtagtatatttcaaacttttgtagaattgttAAC-CTATA----------------------------------------------------------------------------------------------TAGAA----------aactttatgactcaaaatttcatgaggaggaaaacttgcataaaaatgtgtaataccatctataagaaa---tct------------------ i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875031 124 - 91010382 ATGAGATCTTAGTATATTTCAAACCTTTGTAGAATTGTTAAC-CTATA----------------------------------------------------------------------------------------------TAGAA----------AACTTTATGACTCAAAATTTCATGAGGAGGAAAACTTGCATAAAAATGTGTAATACCATCTATAAGAAA---TCT------------------ i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986111 124 + 5179401 atgagatcgtagtatatttcaaacctttgtagaattgttAAC-CTATA----------------------------------------------------------------------------------------------CAgta----------aactttatgactcaaaatttcatgaggaggaaaacttccataaaaatgtgtaataccatctataagaaa---tct------------------ i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691852 124 - 21726897 atgagatcatagtatatttcaaacctttgtagaattgttAAC-CTATA----------------------------------------------------------------------------------------------TAGAA----------aactttatgactcaaaatttcatgaggaggaaaaattgcataaaaatgtgtaataccatctataaaaaa---tct------------------ i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112510399 124 + 204313951 atGAGATCATAGTATATTTCTAACCTCTGTAGAATTGTTAAC-TCATA----------------------------------------------------------------------------------------------TAGAA----------AACTTTATGACTCAAAATTTCAT---GAGGAAAGATTGCATAAAGATATGTAATGACATTTGTAAGAAATCTTCT------------------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44956189 121 + 71252344 ATGAGATCATAGTATATTTCTAACCTCTGTAGAACTGTTAAC-CCATA----------------------------------------------------------------------------------------------TAGAA----------AACTTTATGACTCAAAATTTCAT---GAGGAAAAATTGCATAAAGATATGTAATGACATTTGTAAGAAA---TCT------------------ i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 320641 121 - 1393929 ATGAGATCATAGTATATCTCTAACCTCTGTAGAATTGTTAAC-CCATA----------------------------------------------------------------------------------------------TAGAA----------AACTTTATGACTCAAAATTTCAT---GAGGAAAAATTGCATAACGATATGTAATGACATTTGTAAGAAA---TCT------------------ i cebCap1.NW_016107830v1 I 59 I 4 s aotNan1.NW_018506370v1 1397037 121 - 15889662 ATGAGATCATAGTATATTTCTAACCTCTGTAGAATTGTTAAC-CCTTT----------------------------------------------------------------------------------------------TAGAA----------AACTTTATGACTCAAAATTTCAT---GAGGAAAAATTGCATAAAGATACGTAATGACATTTGTAAGAAA---TCT------------------ i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1275883 114 - 29863360 TTGAGATCA---------GTTAATCTTTGTAGAATTTTT-AC-CTTTG----------------------------------------------------------------------------------------------TAGAA----------AAATCTATGACTGAACATTTTATGAGAAGGAAAACTTGCCCAGTAATGAGTAATGACATCCGTTGGAAA---TCT------------------ i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76430930 99 + 120421639 CTGAAATGATAAACTATAG------TCTGCAGAGTTCTTTACGACAGA----------------------------------------------------------------------------------------------CAGCA----------GACTC-------------TCCAT---GAGGAAACACTACACAACAATCC----CAGGATCTGTGAGCAG---TGC------------------ i mm10.chr13 C 0 I 2 s canFam3.chr3 14295339 123 + 91889043 GTTAAATCACATTATATTTCTAATCTTCAGAGAACCA-TAAT-ATTTG----------------------------------------------------------------------------------------------TAGAA----------AACTTTAGGACTCAAAACTTCACAAGGAGGAAAAGTTCTACAAGAATGTGTAACAACATCTATGAGAAA---TCT------------------ i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1210529 240 - 11655695 ATGAGGTCA---TATATTTCTAATCTTTGTAGAATTGCTTGT-GTATACTAGCATTTATAACATGGAAAATTACTTTTATTTTTTTAATTCTCTTTAAGTTATGGGTTTTCCAAGAGAAAATCCAGTTTGGGAATTTTGCATTAGAAGCAGAATATCAACTTCAGGACTCCACATTTCATGAGGAAGAATAATTCCATAATAATGT---ATATCATCAATTGGACA---TCATCAAGTGGACATAATTGA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e proCoq1.NW_012147189v1 554726 2858 - 10520994 I a score=194913.000000 s hg38.chr5_GL383530v1_alt 14591 25 + 101241 TC---AATTTGACATAAT-AAA-AAAATTA s panTro5.chr5 20243411 28 + 181907262 tcttcaatttgacataat-aaa-aaaatta i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260723 28 + 183735486 tcttcaatttgacataat-aaa-aaaatta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746553 25 - 13748885 tc---aatttgacataat-aaa-aaaatta i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781855 28 - 163208435 TCTTCAATTTGACATAAT-AAA-AATATTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809185 28 - 180051392 tcttcaatttgacataat-aaa-aacatat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913591 28 - 181584905 TCTTCAATTTGACATAAT-AAA-AACATAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136460 28 - 8785636 tcttcaatttgacataat-aaa-aacatat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605057 28 + 27333823 tcttcaatttgacataat-aaa-aacatat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875155 28 - 91010382 TCTTCAATTTGACATAAT-AAA-AACATGT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986235 28 + 5179401 tcttcaatttgacataat-aaa-aacatat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7691976 28 - 21726897 tctccactttgacataat-aaa-aacatat i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112510523 22 + 204313951 ---TCAATTTGACATA---AAA-AACGTG- i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 44956310 24 + 71252344 ---TCAATTTGACATAAT-AAA-AACATG- i saiBol1.JH378106 C 0 I 1 s aotNan1.NW_018506370v1 1397158 25 - 15889662 ---TCAATTTGACATAATAAAA-AACATG- i aotNan1.NW_018506370v1 C 0 I 1 s otoGar3.GL873536 1275997 26 - 29863360 ---TCCATCAGACATGCTGAGA-AGTATAC i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76431031 24 + 120421639 ---TCATTTGGGAATAAT-AAA-GCATCA- i mm10.chr13 I 2 I 2 s canFam3.chr3 14295462 26 + 91889043 ---TTAATCAGACATAAT-AAATAACATAC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1210769 26 - 11655695 ---TCAATTGGACATAAT-AAATAACACAC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e proCoq1.NW_012147189v1 554726 2858 - 10520994 I e cebCap1.NW_016107830v1 320762 4 - 1393929 I a score=266473.000000 s hg38.chr5_GL383530v1_alt 14616 18 + 101241 AAAATGTGAAGAAGAAAA- s panTro5.chr5 20243439 18 + 181907262 aaaatgtgaagaagaaaa- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260751 18 + 183735486 aaaatgtgaagaagaaaa- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746578 18 - 13748885 aaaatgtgaagaagaaaa- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781883 18 - 163208435 AAAATCTGAAGAAGAAAA- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809213 18 - 180051392 aaaatgtgaagaagaaaa- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913619 18 - 181584905 AAAATGTGAAGAAGAAAA- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136488 18 - 8785636 aaaatgtgaagaagaaaa- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605085 18 + 27333823 aaaatgtgaagaagaaaa- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875183 18 - 91010382 AAAATGTGAAGAAGAAAA- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986263 18 + 5179401 aaaatgtgaagaagaaaa- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692004 18 - 21726897 aaaatgtgaagaagaaaa- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112510546 18 + 204313951 AAAATGTGAAGAAGAAAA- i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 44956335 18 + 71252344 AAAATGTGAAGAAGAAAA- i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107830v1 320766 18 - 1393929 AAAATGTGAAGAAGAAAA- i cebCap1.NW_016107830v1 I 4 C 0 s aotNan1.NW_018506370v1 1397184 18 - 15889662 AAAATGTGAAGAAGAAAA- i aotNan1.NW_018506370v1 I 1 C 0 s otoGar3.GL873536 1276023 18 - 29863360 AAAGTATAAAGAAGAAAG- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76431057 18 + 120421639 TAGGTGTGAAGAAGAAAA- i mm10.chr13 I 2 I 2178 s canFam3.chr3 14295488 18 + 91889043 GAAGTGTGAAATAAAAAG- i canFam3.chr3 C 0 I 1896 s dasNov3.JH570378 1210795 19 - 11655695 AAAGTGTGAAGAAAGAAAG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e proCoq1.NW_012147189v1 554726 2858 - 10520994 I a score=142867.000000 s hg38.chr5_GL383530v1_alt 14634 11 + 101241 TGTTAGAAAAA s panTro5.chr5 20243457 11 + 181907262 tgttagaaaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260769 11 + 183735486 tgttagaaaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746596 11 - 13748885 tgttagaaaaa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781901 11 - 163208435 TGTTAGAAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809231 11 - 180051392 tgttagaaaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913637 11 - 181584905 TGTTAGAAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136506 11 - 8785636 tgttagaaaaa i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605103 11 + 27333823 tgttagaaaaa i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875201 11 - 91010382 TGTTAGAAAAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986281 11 + 5179401 tgttagaaaaa i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692022 11 - 21726897 tgtcagaaaaa i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112510564 11 + 204313951 TGTTACAAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44956353 11 + 71252344 TGTTTCAAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 320784 11 - 1393929 TGTTACAAAAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1397202 11 - 15889662 TGTTACAAAAA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1276041 11 - 29863360 TGTAAGAAAAA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14297402 11 + 91889043 tgttggataag i canFam3.chr3 I 1896 C 0 s dasNov3.JH570378 1210814 11 - 11655695 TGTTAGAAAAA i dasNov3.JH570378 C 0 I 3860 e micMur3.chr12 84810005 3851 + 108143057 I e proCoq1.NW_012147189v1 554726 2858 - 10520994 I e mm10.chr13 76431075 2178 + 120421639 I a score=25585.000000 s hg38.chr5_GL383530v1_alt 14645 2 + 101241 GT s panTro5.chr5 20243468 2 + 181907262 gt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260780 2 + 183735486 GT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746607 2 - 13748885 gt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781912 2 - 163208435 GT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809242 2 - 180051392 gt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913648 2 - 181584905 GT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136517 2 - 8785636 gt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605114 2 + 27333823 GT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875212 2 - 91010382 GT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986292 2 + 5179401 gt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692033 2 - 21726897 gt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112510575 2 + 204313951 GT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44956364 2 + 71252344 GT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 320795 2 - 1393929 GT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1397213 2 - 15889662 GT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1276052 2 - 29863360 GT i otoGar3.GL873536 C 0 I 3720 s canFam3.chr3 14297413 2 + 91889043 tT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e proCoq1.NW_012147189v1 554726 2858 - 10520994 I e dasNov3.JH570378 1210825 3860 - 11655695 I e mm10.chr13 76431075 2178 + 120421639 I a score=13600.000000 s hg38.chr5_GL383530v1_alt 14647 1 + 101241 G s panTro5.chr5 20243470 1 + 181907262 g i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260782 1 + 183735486 G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746609 1 - 13748885 g i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781914 1 - 163208435 G i nomLeu3.chr2 C 0 I 1 s rheMac8.chr6 87809244 1 - 180051392 g i rheMac8.chr6 C 0 I 1 s macFas5.chr6 87913650 1 - 181584905 G i macFas5.chr6 C 0 I 1 s macNem1.NW_012011400v1 1136519 1 - 8785636 g i macNem1.NW_012011400v1 C 0 I 1 s cerAty1.NW_012002401v1 1605116 1 + 27333823 G i cerAty1.NW_012002401v1 C 0 I 1 s chlSab2.chr4 1875214 1 - 91010382 G i chlSab2.chr4 C 0 I 1 s manLeu1.NW_012103732v1 1986294 1 + 5179401 g i manLeu1.NW_012103732v1 C 0 I 1 s colAng1.NW_012115488v1 7692035 1 - 21726897 g i colAng1.NW_012115488v1 C 0 I 1 s calJac3.chr2 112510577 1 + 204313951 G i calJac3.chr2 C 0 I 2055 s saiBol1.JH378106 44956366 1 + 71252344 G i saiBol1.JH378106 C 0 I 2067 s cebCap1.NW_016107830v1 320797 1 - 1393929 G i cebCap1.NW_016107830v1 C 0 I 2046 s aotNan1.NW_018506370v1 1397215 1 - 15889662 G i aotNan1.NW_018506370v1 C 0 I 2071 s canFam3.chr3 14297415 1 + 91889043 G i canFam3.chr3 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e proCoq1.NW_012147189v1 554726 2858 - 10520994 I e dasNov3.JH570378 1210825 3860 - 11655695 I e mm10.chr13 76431075 2178 + 120421639 I e otoGar3.GL873536 1276054 3720 - 29863360 I a score=40497.000000 s hg38.chr5_GL383530v1_alt 14648 4 + 101241 TGAG s panTro5.chr5 20243471 4 + 181907262 tgag i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260783 4 + 183735486 TGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746610 4 - 13748885 tgag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781916 4 - 163208435 TGAG i nomLeu3.chr2 I 1 C 0 s rheMac8.chr6 87809246 4 - 180051392 TAAG i rheMac8.chr6 I 1 C 0 s macFas5.chr6 87913652 4 - 181584905 TAAG i macFas5.chr6 I 1 C 0 s macNem1.NW_012011400v1 1136521 4 - 8785636 TAAG i macNem1.NW_012011400v1 I 1 C 0 s cerAty1.NW_012002401v1 1605118 4 + 27333823 TAAG i cerAty1.NW_012002401v1 I 1 C 0 s chlSab2.chr4 1875216 4 - 91010382 TAAG i chlSab2.chr4 I 1 C 0 s manLeu1.NW_012103732v1 1986296 4 + 5179401 TAAG i manLeu1.NW_012103732v1 I 1 C 0 s colAng1.NW_012115488v1 7692037 4 - 21726897 TAAG i colAng1.NW_012115488v1 I 1 C 0 s saiBol1.JH378106 44958434 4 + 71252344 TGAG i saiBol1.JH378106 I 2067 C 0 s cebCap1.NW_016107830v1 322844 4 - 1393929 TGAG i cebCap1.NW_016107830v1 I 2046 C 0 s aotNan1.NW_018506370v1 1399287 4 - 15889662 TGAG i aotNan1.NW_018506370v1 I 2071 C 0 s canFam3.chr3 14297416 4 + 91889043 tgaa i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1214685 4 - 11655695 TGAG i dasNov3.JH570378 I 3860 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e proCoq1.NW_012147189v1 554726 2858 - 10520994 I e mm10.chr13 76431075 2178 + 120421639 I e otoGar3.GL873536 1276054 3720 - 29863360 I e calJac3.chr2 112510578 2055 + 204313951 I a score=16942.000000 s hg38.chr5_GL383530v1_alt 14652 2 + 101241 GA s panTro5.chr5 20243475 2 + 181907262 gA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260787 2 + 183735486 GA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746614 2 - 13748885 gt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781920 2 - 163208435 GA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809250 2 - 180051392 GA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913656 2 - 181584905 GA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136525 2 - 8785636 GA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605122 2 + 27333823 GA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875220 2 - 91010382 GA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986300 2 + 5179401 GA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692041 2 - 21726897 GA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112512633 2 + 204313951 GA i calJac3.chr2 I 2055 C 0 s saiBol1.JH378106 44958438 2 + 71252344 GA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 322848 2 - 1393929 GA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1399291 2 - 15889662 GA i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14297421 1 + 91889043 g- i canFam3.chr3 I 1 I 2 s dasNov3.JH570378 1214689 2 - 11655695 GA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e proCoq1.NW_012147189v1 554726 2858 - 10520994 I e mm10.chr13 76431075 2178 + 120421639 I e otoGar3.GL873536 1276054 3720 - 29863360 I a score=379967.000000 s hg38.chr5_GL383530v1_alt 14654 38 + 101241 GAGAGATACAGTGGTAT-AATAAAATG--AAGAGCCTCATA s panTro5.chr5 20243477 38 + 181907262 GAGAGATACAGTGGTAT-AATAAAATG--AAGAGCCTCATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260789 38 + 183735486 GAGAGATACAGTGGTAT-AATAAAATG--AAGAGCCTCATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746616 38 - 13748885 GAGAGATACAGTGGTAT-AATAAAATG--AAGAGCCTCATA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781922 38 - 163208435 GAGAGATACAGTGGTAT-AATCAAATG--AAGAGCCTCATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809252 38 - 180051392 GAGATCTACAGTGGTGT-AATAAAATG--AAGAGCCTCATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913658 38 - 181584905 GAGATCTACAGTGGTGT-AATAAAATG--AAGAGCCTCATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136527 38 - 8785636 GAGATCTACAGTGGTGT-AATAAAATG--AAGAGCCTCATA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605124 38 + 27333823 GAGATCTACAGTGGTGT-AATAAAATG--AAGAGCCTCATA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875222 38 - 91010382 GAGATCTACAGTGGTGT-AATAAAATG--AAGAGCCTCATA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986302 38 + 5179401 GAGATCTACAGTGGTGT-AATAAAATG--AAGAGCCTCATA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692043 38 - 21726897 GAGAGATACAGTGGTGT-AATAAAATG--AAGAGCCTCGTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112512635 38 + 204313951 GAGAGATATAGTGGTAA-AATAAAATG--AAGAGCCTCATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44958440 38 + 71252344 GAGGGATATAGTGGTAA-AATAAAATG--AAGAGCCTCATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 322850 38 - 1393929 GAGAGATATAGTGGTAA-AATAAAGTG--AAGAGCCTCATA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1399293 38 - 15889662 GAGAGACATAGTGATAA-AATAAAATG--AAGAGCCTCATA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1279774 40 - 29863360 GAGAGAGCAGGGGGTGT-AACAGAGAGTCAGGAGCTGCAGA i otoGar3.GL873536 I 3720 C 0 s canFam3.chr3 14297424 35 + 91889043 taaatgcatgattgaatgaatgaaATA--ATGAGATG---- i canFam3.chr3 I 2 C 0 s dasNov3.JH570378 1214691 40 - 11655695 AGGATAGAAGATGATGT-AATCAAACGTCAGGAGTTGTATA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e proCoq1.NW_012147189v1 554726 2858 - 10520994 I e mm10.chr13 76431075 2178 + 120421639 I a score=157940.000000 s hg38.chr5_GL383530v1_alt 14692 11 + 101241 GGAAGAGAGAT s panTro5.chr5 20243515 11 + 181907262 GGAAGAGAGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260827 11 + 183735486 GGAAGAGAGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746654 11 - 13748885 GGAAGAGAGAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781960 11 - 163208435 GGAAGAGAGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809290 11 - 180051392 GGAAGAGAGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913696 11 - 181584905 GGAAGAGAGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136565 11 - 8785636 GGAAGAGAGAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605162 11 + 27333823 GGAAGAGAGAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875260 11 - 91010382 GGAAGAGAGAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986340 11 + 5179401 GGAAGAGAGAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692081 11 - 21726897 GGAAGAGAGAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112512673 11 + 204313951 GGAGGAGAGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44958478 11 + 71252344 GGAGGAGAGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 322888 11 - 1393929 GGAGGAGATAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1399331 11 - 15889662 GGAGGAGAGAT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 557584 11 - 10520994 GGAGGAGAGGT i proCoq1.NW_012147189v1 I 2858 C 0 s otoGar3.GL873536 1279814 11 - 29863360 GCCGGAGAGCT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14297459 10 + 91889043 -GAAGGAAGAC i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1214731 11 - 11655695 GGAGGAGAGGT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84810005 3851 + 108143057 I e mm10.chr13 76431075 2178 + 120421639 I a score=2285318.000000 s hg38.chr5_GL383530v1_alt 14703 159 + 101241 CATCTGTCCTAA-------TCAACTATCAAAAGCAAGTGAC------CCTCACCTCTTTCCACCCTCTCAGTCCTTTAGAAATTAGAAAAGCAAAGAAGAGAGTAGTAAACATGTACCCAGGAGTTTCTGTAACTTAATACTGGAAAATACCTATATCAAGAGAAAATAATT s panTro5.chr5 20243526 159 + 181907262 CATCTGTCCTAA-------CCAACCATCAAAAGCAAGTGAC------CCTCACCTCTTTCCACCCTCTCAGTCCTTTAGAAATTAGAAAAGCAAAGAAGAGAATAGTAAACATGTACCCAGGAGTTTCTGTAACTTAATACTGGAAAATACCTATATCAAGAGAAAATAATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260838 159 + 183735486 CATCTGTCCTAA-------CCAACCATCAAAAGCAAGTGAC------CCTCACCTCTTTCCACCCTCTCAGTCCTTTAGAAATTAGAAAAGCAAAGAAGAGAATAGTAAACATGTACCCAGGAGTTTCTGTAACTTAATACTGGAAAATACCTATATCAAGAGAAAATAATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746665 159 - 13748885 CATCTGTCCTAA-------TCAACCATCAAAAGCAGGTGAC------CCTCACCTCTTTCCACCCTCTCAGTCCTTTAGAAATTAGAAAAGCAAAGAAGAGAGTAGTAAATGTGTACCCAGGAGTTTCTGTAACTTAATACTGGAAAATACCTATATCAAGAGAAAATAATT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53781971 159 - 163208435 GATCTGTCCTAA-------CCAACCATCAAAAGCAAGTGAC------CCTCACCTCTTTCCACCCTCTCAGTCCTTTAGAAATTAGAAGAGCAAAGAAGAGAGTAGTAAACATGTACCCAGGAGTTTCTGTAACTTAATACCGGAAAATACCTATATCAAGAGAAAGTAATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809301 159 - 180051392 CATCTGTCCTAA-------CCCACCATTGAAAGCAAGTGAC------CTTCACCTCTTTCCACCCTCTCAAACCTTTAGAAATTAGAAAAGCAAAGAAGAGAATAGTAAACATGTACCCAGGAGTTTCTGTAACTTAATACAGGAAAATACCTATATCAAGAGAAAATAATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913707 159 - 181584905 CATCTGTCCTAA-------CCCACCATTGAAAGCAAGTGAC------CTTCACCTCTTTCCACCCTCTCAAACCTTTAGAAATTAGAAAAGCAAAGAAGAGAATAGTAAACATGTACCCAGGAGTTTCTGTAACTTAATACAGGAAAATACCTATATCAAGAGAAAATAATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136576 159 - 8785636 CATCTGTCCTAA-------CCCACCATTGAAAGCAAGTGAC------CTTCACCTCTTTCCACCCTCTCAAACCTTTAGAAATTAGAAAAGCAAAGAAGAGAATAGTAAACATGTACCCAGGAGTTTCTGTAACTTAATACAGGAAAATACCTATATCAAGAGAAAATAATT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605173 159 + 27333823 CATCTGTCCTAA-------CCCACCATTGAAAGCAAGTGAC------CTTCACCTCTTTCCACCCTCTCAAACCTTTAGAAATTAGAAAAGCAAAGAAGAGAATAGTAAACATGTACCCAGGAGTTTCTGTAACTTAATACAGGAAAATACCTATATCAAGAGAAAATAATT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875271 157 - 91010382 CATCTGTCCTAA-------CCCACCAGTGAAAGCAAGTGAC------CTTCACCTCTTTCCACCCTCTCAAACCTTTAGAAATTAGAAAAGCAAAGAAGAGAATAGTAAAC--GTACCCAGGAGTTTCTGTAACTTAATACAGGAAAATACCTATATCAAGAGAAAATAATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986351 159 + 5179401 CATCTGTCCTAA-------CCCACCATTGAAAGCAAGTGAC------CTTCACCTCTTTCCACCCTCTCAAAGCTTTAGAAATTAGAAAAGCAAAGAAGAGAATAGTAAACATGTACCCAGGAGTTTCTGTAACTTAATACAGGAAAATACCTATATCAAGAGAAAATAATT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692092 159 - 21726897 CACCTGTCCTAA-------CCCACCATTGAAAGCAAGTGAC------CTTCACCTCTTTCCACCTTCTCAAACCTTTAGAAATTAGAAAAGCAAAGAAGAGAATAGTAAACATGTACCCAGGAGTTTCTGTAACTTAATACAGGAAAATACCTATATCAAGAGAAAATAATT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112512684 149 + 204313951 CATCTGTCCTAA-------TCAGCCATTGAAAGCAAGTGAC------CTTCACCTCTTTCCACCCTCTCAGTCCTTTATAAATT----------AGAAGAGACTTGTAAACATGTACCCAGGAGTTTCTGTAACTTAATACAGTAAAATATCTAAATCAAGAGAAAATAATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44958489 159 + 71252344 CATCTGTCCTAA-------CCAACCATCAAAAGCAAGTGAC------CTTCACCTCTTTCCACCCTCTCAGTCCTTTAGAAATTAGAAAAGCAAAGAAGAGACTTGTAAACATGTACCCAGGAGTTTCTGTAACTTAATACAGGAAAATATCTAAATCAAGAGAAAATAACT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 322899 159 - 1393929 CATCTGTCCTAA-------CCAACCATCGAAAGCAAGTGAC------CTGCACCTCTGTCCACCCTCTCAGTCCTTTAGAAATTAGAAAAGCAAAGAAGAGACTTGTAAACATGTACCCAGGAGTTTCTGTAACTTAATACAGGAAAATATCTAAATCAAGAGAAAATAACT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1399342 159 - 15889662 CATCTGTCCTAA-------CCAACCATCAAAAGCAAGTGAC------CTGCACCTCTTTCCACCCTCTCACTCCTTTAGAAATTAGAAAAGCAAAGAAGAGACTTGTAAACATGTACCCAGGAGTTTCTGTAACTTAATACAGGAAAATATCTAAATCAAGAGAAAATAACT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84813856 150 + 108143057 CATCTGTCTTGA-------CCAGCCATCAAAAGCCAGTGCT------CCTCGCCTCTCTCCATCCCCTCAGTCCTTTAGAAATTAGAAAAGCAGAGAAGAGAGTTGTAAACATGTGTCCAAGAGTCTGTGGGCC-----ACAGGAAAATGCTTATGTCAAGAGAAAA----T i micMur3.chr12 I 3851 C 0 s proCoq1.NW_012147189v1 557595 150 - 10520994 CATCTGTCTTGA-------TCAGCCATCAAAAGCCAGTGCT------CCTCGCCTCTCTCCATCCACTCAGTCCTTTAGAAATTAGAAAAGCAGACAAGAGAGTTGTAAACATGTGCCCAAGAGTCTGTGGACC-----ATGAGAAAATGCCTATATCAAGAGAAAA----T i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1279825 147 - 29863360 CAAATGTCTTGACATCCATCCAGTCATCAAAAGCAAGTGCC------CTTCACCTCTCTTTATCCTCTTGGTCCTTTACAAATTAGAAAAGCAGAGAGGAGAGTTATAAACATGTGCCC-AGTGTCTGTGTAACTCAAGACGGGAAATTGCCT------------------T i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14297470 157 + 91889043 CAAATCCTCTAA-------CTGGCCATCAAAAGCACGTGCC------CTTTGCCTCTCTCTATCCCCTTAGTCCTTTAGAAACTAGAAAAGCAGAGCAGAGAGTTGTAAACATGTACACAACAG--TCTGTAACTCAGTGCAGGAGAATGCCTATCACAAGAGGAAAAAATC i canFam3.chr3 I 1 C 0 s dasNov3.JH570378 1214742 164 - 11655695 CACCTATCTTGG-------CCAGCCATGAGGAGCAAGTGCCCCCCCTCCCCACTTCTCTCCATCCCTTCAGT-CTTTGGAAATTAGAAAAGTAAAGCAGAGAATTATAAACATGCAGCCAAGAGACAGTGTAACTCAATGGAGGGGAATGCCTACTGCAATAGAAAATGATT i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76431075 2178 + 120421639 I a score=275973.000000 s hg38.chr5_GL383530v1_alt 14862 22 + 101241 AGCAAAGTCATTGAACA--TCTTT s panTro5.chr5 20243685 22 + 181907262 AGCAAAGTCATTGAACA--TCTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20260997 22 + 183735486 AGCAAAGTCATTGAACA--TCTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746824 22 - 13748885 AGCAAAGTCATTGAACA--TCTTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53782130 22 - 163208435 AGCAAAGTCATTGAACA--TCTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809460 22 - 180051392 AGCAAAGTCATTGAACA--TCTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913866 22 - 181584905 AGCAAAGTCATTGAACA--TCTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136735 22 - 8785636 AGCAAAGTCATTGAACA--TCTTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605332 22 + 27333823 AGCAAAGTCATTGAACA--TCTTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875428 22 - 91010382 AGCAAAGTCATTGAACA--TCTTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986510 22 + 5179401 AGCAAAGTCATTGAACA--TCTTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692251 22 - 21726897 AGCAAACTCATTGAACA--TCTTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112512833 23 + 204313951 AGCAAAGTGATTCAACA-TATTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44958648 23 + 71252344 AGCAAAGTGATTCAATA-TTTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 323058 24 - 1393929 AGCAAAATGATTCAACATTTTTTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1399501 23 - 15889662 AGCAAAGTGATTCAACA-TTTTTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84814006 21 + 108143057 AGCAAATTCATTGAATA--TC-TT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 557745 22 - 10520994 AGCAAATTCATTGAACA--TCTTT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1279972 22 - 29863360 ACCAAATTCACTGAACA--ACTTT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76433253 22 + 120421639 AGAAGAGCCCTAGGGAA--TTTAA i mm10.chr13 I 2178 C 0 s canFam3.chr3 14297627 22 + 91889043 AGCAAATTCATTGAATA--TCTTT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1214906 22 - 11655695 ACCGAATTTTTAAAAaa--gattt i dasNov3.JH570378 C 0 I 408 a score=220351.000000 s hg38.chr5_GL383530v1_alt 14884 13 + 101241 AACCCAAGCCAGG s panTro5.chr5 20243707 13 + 181907262 AACCCAAGCCAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20261019 13 + 183735486 AACCCAAGCCAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746846 13 - 13748885 AACCCAAGCCAGG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53782152 13 - 163208435 AACCCAAGCCAGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809482 13 - 180051392 AACCCAAGTCAGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913888 13 - 181584905 AACCCAAGTCAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136757 13 - 8785636 AACCCAAGTCAGG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605354 13 + 27333823 AACCCAAGTCAGG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875450 13 - 91010382 AACCCAAGTCAGG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986532 13 + 5179401 AACCCAAGTCAGG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692273 13 - 21726897 AACCCAAGTCAGG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112512856 13 + 204313951 AATCCAAGCCAGG i calJac3.chr2 C 0 I 3 s saiBol1.JH378106 44958671 13 + 71252344 AATCCAAGCCAGG i saiBol1.JH378106 C 0 I 3 s cebCap1.NW_016107830v1 323082 13 - 1393929 AATCCAAGCCAGG i cebCap1.NW_016107830v1 C 0 I 23 s aotNan1.NW_018506370v1 1399524 13 - 15889662 AACCCAAGCCAGG i aotNan1.NW_018506370v1 C 0 I 22 s micMur3.chr12 84814027 13 + 108143057 GGCCCAAGCCAGA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 557767 13 - 10520994 AACCCAAGTCAGA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1279994 13 - 29863360 AACCCAAGCCAGA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76433275 12 + 120421639 AACCCAAACGAC- i mm10.chr13 C 0 C 0 s canFam3.chr3 14297649 13 + 91889043 AACTTAAGCCAGA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1215336 13 - 11655695 AACCCAAGCTAGA i dasNov3.JH570378 I 408 C 0 a score=127887.000000 s hg38.chr5_GL383530v1_alt 14897 16 + 101241 TAGCCTCTGAA-----TTAAG s panTro5.chr5 20243720 16 + 181907262 TAGCCTCTGAA-----TTAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20261032 16 + 183735486 TAGCCTCTGAA-----TTAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746859 16 - 13748885 TAGCCTCTGAA-----TTAAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53782165 16 - 163208435 TAGCCTCTGAA-----TTAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809495 16 - 180051392 TAGTCTCTGAA-----TTAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913901 16 - 181584905 TAGTCTCTGAA-----TTAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136770 16 - 8785636 TAGTCTCTGAA-----TTAAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605367 16 + 27333823 TAGTCTCTGAA-----TTAAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875463 16 - 91010382 TAGTCTCTGAA-----TTAAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986545 16 + 5179401 TAGTCTCTGAA-----TTAAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692286 16 - 21726897 TAGTCTCTGAA-----TTAAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112512872 20 + 204313951 CAATTACAGAACATTGTTCA- i calJac3.chr2 I 3 C 0 s saiBol1.JH378106 44958687 20 + 71252344 CAATTACAGAACATTGTTCA- i saiBol1.JH378106 I 3 C 0 s micMur3.chr12 84814040 16 + 108143057 TAGTCTCTCAA-----TTAAG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 557780 16 - 10520994 TAGTCTCTCAA-----TTAAG i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1280007 16 - 29863360 TAGTCTCTCAA-----TTAAG i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76433287 14 + 120421639 TACTCTTTGTG-----CAA-- i mm10.chr13 C 0 C 0 s canFam3.chr3 14297662 16 + 91889043 CATTCTGTGAG-----TTGAA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1215349 19 - 11655695 TAGTCTCTGAA--TTATTAAG i dasNov3.JH570378 C 0 C 0 e aotNan1.NW_018506370v1 1399537 22 - 15889662 I e cebCap1.NW_016107830v1 323095 23 - 1393929 I a score=2850019.000000 s hg38.chr5_GL383530v1_alt 14913 183 + 101241 ACATTTAGTC-TTCAATTACAGACCTCTAGGAATGACTCC--TGTTTCTGTTT--TGTTTGATTTTCACAAGTCTTATAATTCATCC--CCAGAACTAGACTCATCAGATATGTCTGGTGGCAACATCTTTAATTAAACTCTTTATTAAAATCTACAGCTGTCAAAATAAATAAACCTTAAAGCACAGAA s panTro5.chr5 20243736 183 + 181907262 ACATTTAGTC-TTCAATTACAGACCTCTAGGAATGACTCC--TGTTTCTGTTT--TGTTTGATTTTCACAAGTCTTATAATTCATCC--CCAGAACTAGACTCATCAGATATGTCTGGTGGCAACATCTTTAATTAAACTCTTTATTAAAATCTACAGCTGTCAAAATAAATAAACCTTAAAGCACAGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20261048 183 + 183735486 ACATTTAGTC-TTCAATTACGGACCTCTAGGAATGACTCC--TGTTTCTGTTT--TGTTTGATTTTCACAAGTCTTATAATTCATCC--CCAGAACTAGACTCATCAGATATGTCTGGTGGCAACATCTTTAATTAAACTCTTTATTAAAATCTACAGCTGTCAAAATAAATAAACCTTAAAGCACAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4746875 183 - 13748885 ACATTTAGTC-TTCAATTACAGACCTCTAGGAATGACTCC--TGTTTCTGTTT--TGTTTGATTTTCACAAGTCTTATAATTCATCC--CCAGAACTAGACTCATCAGATATGTCTGGTGGCAACATCTTTAATTAAACTCTTTATTAAAATCTACAGCTGTCAAAATAAATAAACCTTAAAGCACAGAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53782181 183 - 163208435 ACATTCAGTC-TTCAATTACAGACCTCTAGGAATGACTCC--TGTTTCTGTTT--TGTTTGATTTTCACAAGTCCTATAATTCATCC--CCAGAACTAGACTCATCAGATATGTCTGGTGGCAACATCTTTAATTAAACTCTTTATTAAAATCTACAGCTGTCAAAATAAATAAGCCTTAAAGCACAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809511 179 - 180051392 ACATGCAGTC-TTCAATTACAGACCTCTAGGAATGACTCC--TGTTTGTGTTT--TGTTTGATTTTCACAAGTCTTATAATTCATCC--CTAGAACTAGACTCATCAGATATGTCTGGTGGCAACATCTTTAATTAAATTCTTTATTAGAATCTACAGCTGTCAAAATAAA----CCTTAAAGTACAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87913917 179 - 181584905 ACATGCAGTC-TTCAATTACAGACCTCTAGGAATGACTCC--TGTTTGTGTTT--TGTTTGATTTTCACAAGTCTTATAATTCATCC--CTAGAACTAGACTCATCAGATATGTCTGGTGGCAACATCTTTAATTAAATTCTTTATTAGAATCTACAGCTGTCAAAATAAA----CCTTAAAGTACAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136786 179 - 8785636 ACATGCAGTC-TTCAATTACAGACCTCTAGGAATGACTCC--TGTTTGTGTTT--TGTTTGATTTTCAAAAGTCTTATAATTCATCC--CTAGAACTAGACTCATCAGATATGTCTGGTGGCAACATCTTTAATTAAATTCTTTATTAGAATCTACAGCTGTCAAAATAAA----CCTTAAAGTACAGAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605383 177 + 27333823 ACATGCAGTC-TTCAACTACAGACCTCTAGGAATGACTCC--TGTTTGTGTTT--TGTTTGATTTTCACAAGTCTTATAATTCATCC--CTAGAACTAGACTCATCAG--ATGTCTGGTGGCAACATCTTTAATTAAATTCTTTATTAAAATCTACAGCTGTCAAAATAAA----CCTTAAAGTACAGAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875479 179 - 91010382 ACATGCAGTC-TTCAATTACAGACCTCTAGGAATGACTCC--TGTTTGTGTTT--TGTTTGATTTTCACAAGTCTTATAATTCATCC--CTAGAACTAGACTCATCAGATATGTCTGGTGGCAACATCTTTAATTAAATTCTTTATTAAAATCTACAGCTGTCAAAATAAA----CCTTAAAGTACAGAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986561 179 + 5179401 ACATGCAGTC-TTCAACTACAGACCTCTAGGAATGACTCC--TGTTTGTGTTT--TGTTTGATTTTCACAAGTCTTATAATTCATCC--CTAGAACTAGACTCATCAGATATGTCTGGTGGCAACATCTTTAATTAAATTCTTTATTAAAATCTACAGCTGTCAAAATAAA----CCTTAAAGTACAGAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692302 179 - 21726897 ACATGCAGTC-TTCAATTACAGACCTCTGGGAATGACTCC--TGTTTGTGTTT--TGTTTGATTTTCACAAGTCTTATAATTCATCC--CTAGAACTAGACTCATCAGATATGTCTGGTGGCAACATCTTTAAGTAAATTCTTTATTAAAATCTACAGCTGTCAAAATAAA----CCTTAAAGTACAGAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112512892 183 + 204313951 ACGTTCAGTC-TTCAATTACAAACCTCTAGGAATGACTAC--TATTTGTGTTT--TGTTTGATTTTCACAAGTCTTATAACTCATCC--CCAGAGCTAGAGTCATCAGATATGTCTGGTGGCAACATCTTTAATTAAACTCTTTATTAAAATCTACAGCTGTCAAAATAAATTAACCTTAAAGCACAGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44958707 182 + 71252344 ATATTTGGTC-TTCAATTACAGACCTCCAGGAATGAGTAC--TATTTGTGTTT--TGTTTGATTCTCACAAGTCTTATAAC-CATCC--CCAGAACTGGAGTCATCAGATATGTCTGGTGGCAACATCTTTAATTAAACTCTTTATTAAAATCTACAGCTGTCAAAATAAATTAACCTTAAAGCACAGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 323118 183 - 1393929 ACATTCGGTC-TTCAATTACAGGCCTCTAGGAATGACTAC--TATTTGTGTTT--TGTTTGATTTTCACAAGTCTTATAACTCATCC--CCAGAACTAGAGTCATCAGATATGTCTGGTGGCAACATCTTTAATTAAACTCTTTATTAAAATCTACAGCTGTCAAAATAAATTAACCTTAAAGCACAGAT i cebCap1.NW_016107830v1 I 23 I 122 s aotNan1.NW_018506370v1 1399559 183 - 15889662 ACATTCGGTC-TTCAATTACAGACCTCTAGGAATGACTAC--TATTGGTGTTT--TGTTTGATTTTCACAAGTCTTTTAACTCATCC--CCAGAACTAGAGTCATTAGATATGTCTGGTGGCAACATCTTTAATTAAACTCTTTATTAAAATCTACAGCTGTCAAAATAAATTAACCTTAAAGCACAGAT i aotNan1.NW_018506370v1 I 22 C 0 s micMur3.chr12 84814056 185 + 108143057 ACATTCAGTC-TTCGATTACAGACCTCCTGGAATGACTACTGTGTTTGCATTTTATGTTTGAATTTCACAAGTC--ATAATTTTTCC--CCAGAACTAGACTCATCAGATATGTCTTGTGGTAACACCTTTAATTAAACTCTTTATTAAGACCTACAGCTGTGAAAATAAAGAAACCTTAAAGCACAGGA i micMur3.chr12 C 0 I 1 s proCoq1.NW_012147189v1 557796 179 - 10520994 ACATTCAGTC-TTCTATTACAGCCCTCTAGGAATGACTAC--TGTTTGCATTTTATGTTTGAATTTCACAAGTC--ATAATTTGTCC--CCAGAACTAGATTCGTCGGATATGTCTTGTGGTAACACCTTTAATTAAAC----TATTAAGATCTACAGCTGTGAAAATAAAGACACCTTAAAGCACAAGA i proCoq1.NW_012147189v1 C 0 I 1 s otoGar3.GL873536 1280023 183 - 29863360 ACTTTCAGTC-TTTGATTACAAACCTCTAAGAATGGCTAC--GATTTGCATTTTATGTTTGATTTTCACAAGTC--GTAACTTGTCC--CTAGAACTGGACTCACCGGACATGGCTTAAGGTAACACCTTTAATTAAACTCTTTATTAAGCTCTACAGCTGTGAAAATAAATAAACCTTAAAGCCCAGGA i otoGar3.GL873536 C 0 I 1 s mm10.chr13 76433301 182 + 120421639 TCATTTGGTC-TTC-ATTGCAGATGTCTGGAAAGGCCTAT--TGTTTATTTAT----ATTGTTTTCCACAATTCTGATAATGTACACAGTCAGAACTGTAGCCACTAACCATGTCTTAGGGCACCACATTTAACTAAACTCCGTATTAAAATCTATAAATATGAAAATAAACAGACCATAGAGAACAGTG i mm10.chr13 C 0 I 1 s canFam3.chr3 14297678 177 + 91889043 ----ACAG----TTGATTACAGACCTCTAGGAGTGACTTC--TGTTTGCATTTTATGTTTGATTTTCACTAGTATTGTAATTCAAAC--CTGGGACAAGACTTGCCAGATATATCTTATAACA-CACCTTTAATTAAACTCTTTATTAAAACCTACAATGGTGAAAATAAATAAACCTCACAGCACAGTA i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1215368 180 - 11655695 ACATTCCGTCTTTTGACTAC-GACTTCTAGGAATGACTAG--TGTTTGCATTT-ATATTGGATTTTCACAAGTCTTGTAATTCACAC--CCAGAACTAGACCCATCAAATATGTTCTGTGACAACACCTTTAATTAAATTCCTTATTA-AACCTACGGCTGTGAAAATAAATAAATCTCAAAGTACA--- i dasNov3.JH570378 C 0 C 0 a score=296525.000000 s hg38.chr5_GL383530v1_alt 15096 20 + 101241 ATAAATTTGAGAGGGCTTTT s panTro5.chr5 20243919 20 + 181907262 ATAAATTTGAGAGGGCTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20261231 20 + 183735486 ATAAATTTGAGAGGGCTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4747058 20 - 13748885 ATAAATTTGAGAGGGCTTTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53782364 20 - 163208435 ATAAATTTGAGAGGGCTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809690 20 - 180051392 ATAAACTTGAGAGGACTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87914096 20 - 181584905 ATAAACTTGAGAGGACTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136965 20 - 8785636 ATAAACTTGAGAGGACTTTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605560 20 + 27333823 ATAAACTTGAGAGGACTTTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875658 20 - 91010382 ATAAACTTGAGAGGATTTTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986740 20 + 5179401 ATAAACTTGAGAGGACTTTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692481 20 - 21726897 ATAAACTGGAGAGGACTTTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112513075 20 + 204313951 ATAAATCTGAGAGGACTTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44958889 20 + 71252344 ACAAATCTGAGAAGACTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 323423 20 - 1393929 ATAAATCTGAGAGGACTTTT i cebCap1.NW_016107830v1 I 122 C 0 s aotNan1.NW_018506370v1 1399742 20 - 15889662 ATAAATCTGAGAGGACTTTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84814242 19 + 108143057 ATAAATTGGA-AAGACTTTT i micMur3.chr12 I 1 C 0 s proCoq1.NW_012147189v1 557976 20 - 10520994 ATAAATTTGAGAACACTTTT i proCoq1.NW_012147189v1 I 1 C 0 s otoGar3.GL873536 1280207 19 - 29863360 ATAAATTTGAGAAGACTTT- i otoGar3.GL873536 I 1 C 0 s mm10.chr13 76433484 20 + 120421639 GTAGATTTGAGAAGGCTTTC i mm10.chr13 I 1 C 0 s canFam3.chr3 14297856 20 + 91889043 ATAAGTTTGACAGGCCTTCT i canFam3.chr3 I 1 C 0 s dasNov3.JH570378 1215548 13 - 11655695 CTAAAT-------GACTTTT i dasNov3.JH570378 C 0 C 0 a score=20685.000000 s hg38.chr5_GL383530v1_alt 15116 3 + 101241 -CCA s panTro5.chr5 20243939 3 + 181907262 -CCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20261251 3 + 183735486 -CCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4747078 3 - 13748885 -CCG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53782384 3 - 163208435 -CCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809710 3 - 180051392 -CCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87914116 3 - 181584905 -CCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136985 3 - 8785636 -CCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605580 3 + 27333823 -CCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875678 3 - 91010382 -CCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986760 3 + 5179401 -CCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692501 3 - 21726897 -CCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112513095 3 + 204313951 -CCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44958909 3 + 71252344 -CCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 323443 3 - 1393929 -CCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1399762 3 - 15889662 -CCA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84814261 3 + 108143057 -CTG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 557996 3 - 10520994 -CTG i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1280226 2 - 29863360 --TG i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76433504 3 + 120421639 -CTA i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1215561 3 - 11655695 ATC- i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14297876 0 + 91889043 C a score=1431853.000000 s hg38.chr5_GL383530v1_alt 15119 102 + 101241 TTA-AGGC-------ATTACCTGGAAGAGATTTTTCCAGAAAATTGAGTGCTCGGACAATGATCACTGTCATAATTTGGGCTAATTGTGGTCATAGAAAGTTTAGGAACT s panTro5.chr5 20243942 102 + 181907262 TTA-AGGC-------ATTACCTGGAAGAGATTTTTCCAGAAAATTGAGTGCTTGGACAATGATCACTGTCATAATTTGGGCTAATTGTGGTCACAGAAAGTTTAGGAACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20261254 102 + 183735486 TTA-AGGC-------ATTACCTGGAAGAGATTTTTCCAGAAAATTGAGTGCTTGGACAATGATCACTGTCATAATTTGGGCTAATTGTGGTCACAGAAAGTTTAGGAACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4747081 102 - 13748885 TTA-AGGC-------ATTACCTGGAAGAGATTTTTCCAGAAAATTGAGTGCTTGGACAATGATCACTGTCATAATTTGGGCTAATTGTGGTCACAGAAAGTTTAGGAACT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53782387 102 - 163208435 TTA-AGGA-------ATTACCTGGAAGAGATTTTTCCAGAAGACGGAGTGCTCGGACAATGGTCACTGTCATAATTTGGGCTAATTGTGGTCACAGAAAGTTTAGGAACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809713 102 - 180051392 TTA-AGGC-------ATTACCTGGAAGAAATTTTTCCAGAAAACAGAGTGCTTGGACAATGGTCACTATCATAATTTGGGCTAACTGTGGTCATAGAAAGTTTAGGAACT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87914119 102 - 181584905 TTA-AGGC-------ATTACCTGGAAGAAATTTTTCCAGAAAACAGAGTGCTTGGACAATGGTCACTATCATAATTTGGGCTAACTGTGGTCATAGAAAGTTTAGGAACT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1136988 102 - 8785636 TTA-AGGC-------ATTACCTGGAAGAAATTTTTCCAGAAAACAGAGTGCTTGGACAATGGTCACTATCATAATTTGGGCTAACTGTGGTCATAGAAAGTTTAGGAACT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605583 102 + 27333823 TTA-AGGC-------ATTACCTGGAAGAAATTTTTCCAGAAAACAGAGTGCTTGGACAATGGTCACTATCATAATTTGGGCTAACTGTGGTCATAGAAAGTTTAGGAACT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875681 102 - 91010382 TTA-AGGC-------ATTACCTGGAAGAAATTTTTCCAGAAAACAGAGTGCTTGGACAATGGTCACTATCATAATTTGGGCTAACCGTGGTCATAGAAAGTTTAGGAACT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986763 102 + 5179401 TTA-AGGC-------ATTACCTGGAAGAAATTTTTCCAGAAAACAGAGTGCTTGGACAATGGTCACTATCATAATTTGGGCTAACTGTGGTCATAGAAAGTTTAGGAACT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692504 102 - 21726897 TTA-AGGC-------ATTACCTGGAAGAGATTTTTCCAGAAAACAGAGTGCTTGGACAATGGTCACTATCATAATTTGGGCTAACTGTGGTCATAGAAAGTTTAGGAACT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112513098 102 + 204313951 TTA-AGGC-------ATTACCTGGAAGAGATTTTTCCAGAAAATGGAGTGCTTGGACAATGGTCATTATTATAATTTGGGCTAAATGTGGTCACAGAAAGTTTAGAAACT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44958912 102 + 71252344 TTA-AGGC-------ATTACCTGGAAGAGATTTTTCCAGAAAATGGAGTGCTCGGACAATGCTCACTATCATAATTTGGGCTAAATGTGGTCACAGAAAGTTTAGAAACT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 323446 102 - 1393929 TTA-AGGC-------ATTACCTGGAAGAGATTTTTCCAGAAAATGGAGTGCTTGGACAATGCTCACTATCATAATTTGGGCTAAATGTGGTCACAGAAAGTTTAGAAACT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1399765 102 - 15889662 TTA-AGGC-------ATTACCTGGAAGAGATTTTTCCAGAAAAGGGAGTGCTTGGACAATGGTCACTATCATAATTTGGGCTAAATGTGGTCACAGAAAGTTTAGAAACT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84814264 103 + 108143057 TCATAGGC-------ATTACTTGGAAGATACTTACCCAGAAAATGGAATATTTGGACAATGGTCACCATAATAATTTGGGCTATTTGTGGTCACAGAAAGTCCAGGaact i micMur3.chr12 C 0 I 2697 s proCoq1.NW_012147189v1 557999 103 - 10520994 TCATAGGC-------ATTACTTGGAAGATACTTTTCCAGAAAATGGAATATTTGGACAATGATCACCATAATAATTTGGGATATTTGTGGTCATAGAAAGTCCAGGAACT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1280228 109 - 29863360 TCATAGTCTTCCAAAAGTACCTGGAAGATACTTTTCCAGAAAATGAAATGTTTGGGCAATAGTCACCATCATAATTTGGGCTATTTGTGGTCACA-AAAGTCCAGGAAGT i otoGar3.GL873536 C 0 C 0 s dasNov3.JH570378 1215564 93 - 11655695 -------------CTATTAGCTGGAAGAGA-TTTTCTAAAAAATGGAATGCTTAGATAATGGTCACTGT-ATA--TTAAACTGATTGTACTTACAGAAAGTGCAGGATTT i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14297876 0 + 91889043 C e mm10.chr13 76433507 0 + 120421639 C a score=11871.000000 s hg38.chr5_GL383530v1_alt 15221 1 + 101241 T s panTro5.chr5 20244044 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 20261356 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4747183 1 - 13748885 T i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53782489 1 - 163208435 T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809815 1 - 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87914221 1 - 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1137090 1 - 8785636 T i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605685 1 + 27333823 T i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875783 1 - 91010382 T i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986865 1 + 5179401 T i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692606 1 - 21726897 T i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112513200 1 + 204313951 T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44959014 1 + 71252344 T i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 323548 1 - 1393929 T i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1399867 1 - 15889662 T i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 558102 1 - 10520994 G i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1280337 1 - 29863360 T i otoGar3.GL873536 C 0 C 0 s dasNov3.JH570378 1215657 1 - 11655695 T i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14297876 0 + 91889043 C e micMur3.chr12 84814367 2697 + 108143057 I e mm10.chr13 76433507 0 + 120421639 C a score=591473.000000 s hg38.chr5_GL383530v1_alt 15222 42 + 101241 GAAAACCCCCAAAGCCTAAACTGATTTAAGACTGCCTATTCT s panTro5.chr5 20244045 42 + 181907262 GAAAACCCCCAAAGCCTAAACTGTTTTAAGATTGCATATTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20261357 42 + 183735486 GAAAACCCCCAAAGCCTAAACTGTTTTAAGATTGCCTATTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4747184 42 - 13748885 GAAAACCCCCAAAGCCTAAACTGATTTAAGATTGCCTATTCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53782490 42 - 163208435 GAAAACCCCCAAAGCCTAAACTGATTTAAGATTGTCTATTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809816 42 - 180051392 GAAAACCCCCAAAGCCTAAACTGATTTAAGATTGTCTATTCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87914222 42 - 181584905 GAAAACCCCCAAAGCCTAAACTGATTTAAGATTGTCTATTCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1137091 42 - 8785636 GAAAACCCCCAAAGCCTAAACTGATTTAAGATTGTCTATTCC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605686 42 + 27333823 GAAAATCCCCAAAGCCTAAACTGATTTAAGATTGTCTATTCC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875784 42 - 91010382 GAAAACCCCCAAAGCCTAAACTGATTTAAGATTGTCTATTCC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986866 42 + 5179401 GAAAACCCCCAAAGCCTAAACTGATTTAAGATTGTGTATTCC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692607 42 - 21726897 GAAAACCCCCAAAGCCTAAACTGATTTAAGATTGTCTATTCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112513201 42 + 204313951 GAAACCCCCCAAAGCCTAAACTGATTTAAGATTGTCTATTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44959015 42 + 71252344 GAAACCCCCCAAAGCCTAAACTGACTTAAGATTGTCTATTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 323549 42 - 1393929 GAAACCCCCCAAAGCCTAAACTGATTTAAGATTGTCTATTCT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1399868 42 - 15889662 GAAACCCCCCAAAGCCTAAACTGATTTAAGAATGTCTATTCT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 558103 42 - 10520994 GAAAACCCCAAAAGCCTAAATTGATTTAATTTTGTCTATTCT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1280338 42 - 29863360 GAATACCCCCAAAGCCTACATTGATTTAATTTTGTCTATTCT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14297876 42 + 91889043 GAAATCCTAAAAACCCTAAATTGATCTAATTTTGCCTATCTT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1215658 42 - 11655695 GAAAGCCCCACATCCCGAAATTGACTGAATTTTGTCTGTTCT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84814367 2697 + 108143057 I e mm10.chr13 76433507 0 + 120421639 C a score=3531237.000000 s hg38.chr5_GL383530v1_alt 15264 276 + 101241 GTTTCTGCGCGTCTTCAGGAGATTTCTCCAGGGTGCTTAGATGTGCATCATAACATTTTCAGAATTTTGCCACTGGAGGGCTCAATGGCCTTTTTAA--TGTTTCTTCTACGAGACCAAATGTTACGTTTGTGTAACAGTGAGA-TGT--GAGACCAAGTTTTTT--CTCCCCTTTTTGAGAAAATCTGTTTTG-----------------------------------------GGTGGTACAGTTAGATGCATG---------------ATAGCCAAAAAGCTTT-TGTAAATTCCCTGAAAGATGGAAA--T--T--TGTCATAGCTACATGTATACTGAAAT s panTro5.chr5 20244087 276 + 181907262 GTTTCTGCGCGTCTTCAGGAGATTTCTCCAGGGTGCTTGGATGTGCATCATAACATTTTCAGAATTTTGCCACTGGAGGGCTCAATGGCCTTCTTAA--TGTTTCTTTTACGAGACCAAATGTTACGTTTGTGTAACAGTGAGA-TTT--GAGACCAAGTTTTTT--CTCCCTTTTTTGAGAAAATCTGTTTTG-----------------------------------------GGGGGTACAGTTAGATGCATG---------------ATAGCCAAAAAGCTTT-TGTAAATTCCCTGAAAGATGCAAA--T--T--TGTCATAGCTACATGTATACTGAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20261399 276 + 183735486 GTTTCTGCGCGTCTTCAGGAGATTTCTCCAGGGTACTTGGATGTGCATCATAACATTTTCAGAATTTTGCCACTGGAGGGCTCAATGGCCTTCTTAA--TGTTTCTTTTACGAGACCAAATGTTACGTTTGTGTAACAGTGAGA-TTT--GAGACCAAGTTTTTT--CTCCCTTTTTTGAGAAAATCTGTTTTG-----------------------------------------GGGGGTACAGTTAGATGCATG---------------ATAGCCAAAAAGCTTT-TGTAAATTCCCTGAAAGATGCAAA--T--T--TGTCATAGCTACATGTATACTGAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4747226 276 - 13748885 GTTTCTGCGCGTCTTCAGGAGATTTCTCCAGGGTGCTTGGATGTGCATCATAACATTTTCAGAATTTTGCCACTGGAGGGCTCAATGGCCTTCTTAA--TGTTTCTTTTACGAGACCAAATGTTACGTTTGTGTAACAGTGAGA-TTT--GAGACCAAGTTTTTT--CTCCCTTTTTTGAGAAAATCTGTTTTG-----------------------------------------GGGGGTACAGTTAGATGCATG---------------ATAGCCAAAAAGCTTT-TGTAAATTCCCTGAAAGATGGAAA--T--T--TGTCATAGCTACATGTATACTGAAAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53782532 276 - 163208435 GTTTCTGCATGTCTTGAGGAGATTTCTCCAGGGTGCTTGGATGTACATCATAACATTTTCATAAATTTGCCACTGGAGGGCTCAATGGCCTTTTTAA--TGTTTCTTTTACGAGCCCAAATGTTATCTTTCTGTAACAGTGAGA-TTT--GAGACCAAGTTTTTT--CTCCCTTTTTTGAGAAAATCTGTTTTG-----------------------------------------GGGGGTACAGTTAGATGCATG---------------ATTGCCAAAAAGCTTT-TATAAATTCCCTGAAAGATGGAAA--T--T--TGTCATAGCTACATGTATACTGAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87809858 256 - 180051392 GTTTCTATGCATCTTCAGGAGATTTCTCCAGGGTGCTTGGATGTGCATCATAACATTTTCATAATTTTGCCACTGGAGGGCTCAATGGCCTTTTTAA--TGTTTTTTTTATGAGAC-------------------ACAGTGAGA-TTT--GAGACCAAGTTTTTT--CTCCCGTTTTTGAGAAAATCTGTTTTG-----------------------------------------GGGGGTACAGTTAGATGCCTG---------------ATAGCC-AAAAGCTTT-TGTAAATGCCCTGAAAGATGGAAA--T--T--TGTCATAGCTACATGTATATTGAAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87914264 256 - 181584905 GTTTCTATGCATCTTCAGGAGATTTCTCCAGGGTGCTTGGATGTGCATCATAACATTTTCATAATTTTGCCACTGGAGGGCTCAATGGCCTTTTTAA--TGTTTTTTTTATGAGAC-------------------ACAGTGAGA-TTT--GAGACCAAGTTTTTT--CTCCCGTTTTTGAGAAAATCTGTTTTG-----------------------------------------GGGGGTACAGTTAGATGCCTG---------------ATAGCC-AAAAGCTTT-TGTAAATGCCCTGAAAGATGGAAA--T--T--TGTCATAGCTACATGTATATTGAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1137133 256 - 8785636 GTTTCTATGCATCTTCAGGAGATTTCTCCAGGGTGCTTGGATGTGCATCATAACATTTTCATAATTTTGCCACTGGAGGGCTCAATGGCCTTTTTAA--TGTTTTTTTTATGAGAC-------------------ACAGTGAGA-TTT--GAGACCAAGTTTTTT--CTCCCGTTTTTGAGAAAATCTGTTTTG-----------------------------------------GGGGGTACAGTTAGATGCCTG---------------ATAGCC-AAAAGCTTT-TGTAAATGCCCTGAAAGATGGAAA--T--T--TGTCATAGCTACATGTATATTGAAAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605728 256 + 27333823 GTTTCTATGCATCTTCAGGAGATTTCTCCAGGGTGCTTGGATGTGCAACATAACATTTTCATAATTTTGCCACTGGAGGGCTCAATGGCCTTTTTAA--TGTTTTTTTTATGAGAC-------------------ACAGTGAGA-TTT--GAGACCAAGTTTTTT--CTCCCTTTTTTGAGAAAATCTGTTTTG-----------------------------------------GGGGGTACAGTTAGATGCCTG---------------ATAGCC-AAAAGCTTT-TGTAAATGCCCTGAAAGATGGAAA--T--T--TGTCATAGCTACATGTATATTGAAAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1875826 255 - 91010382 GTTTCTATGCATCTTCAGGAGATTTCTCCAGGGTGCTTGGATGTGCATCATAACATTTTCATAATTTTGCCACTGGAGGGCTCAATGGCCTTTTTAA---TTTTTTTTTATGAGAC-------------------ACAGTGAGA-TTT--GAGACCAAGTTTTTT--CTCCCTTTTTTGAGAAAATCTGTTTTT-----------------------------------------GGGGGTACAGTTAGATGCATG---------------ATAGCC-AAAAGCTTT-TGTAAATGCCCTGAAAGATGGAAA--T--T--TGTCATAGCTACATGTATTCTGAAAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1986908 258 + 5179401 GTTTCTATGCATCTTCAGGAGATTTCTCCAGGGTGCTTGGATGTGCAACATAACATTTTCATAATTTTGCCACTGGAGGGCTCAATGGCCTTTTTAATGTTTTTTTTTTATGAGAC-------------------ACAGTGAGA-TTT--GAGACCAAGTTTTTT--CTCCGTTTTTTGAGAAAATCTGTTTTG-----------------------------------------GGGGGTACAGTTAGATGCCTG---------------ATAGCC-AAAAGCTTT-TGTAAATGCCCTGAAAGATGGAAA--T--T--TGTCATAGCTACATGTATACTGAAAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692649 253 - 21726897 GTTTCTGTGCATCTTCAGGAGATTTCTCCAGGGTGCTTGGATGTGCATCATAACATTTTCATAATTTTGCCACTGGAGGGCTCAATGGCCTTTTTAA--TG-TTTTTTTATGAG---------------------ACAGTAAGA-TTT--GAGACCAAGTTTTTT--CTCCCTTTTTTGAGAAAATCTGTTTTG-----------------------------------------GGGGGTACAGTTAGATGCATG---------------ATAGCC-AAAAGCTTT-TGTAAATGCCCTGAAAGATGGAAA--T--T--TGTCATAGCTACATGTATACTGAAAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112513243 269 + 204313951 GTTTCTGCCTGTCTTCAAGAGATTTCTCCAGGGTGCTTGGATGAGCATCATAACATTTTCATCATTTTGCCACTGGAGGGCTCAATGGCCTTTTTAA--TGTTTCTTTTAGAAGACCAAATATTACATTTGTATAGCAGTGAGA-TTT--GAGACCAAGTTTTCT--CTC--TTTTTTGAGAAAATCTGTTTTT-----------------------------------------GGGA-----ATTAGGTGCATG---------------ATAGCCAAAAAGCTTT-TGTAAATGCCCTGAAAGATGGAAA--C--T--TGTCATGGCTGCGTGTCTACTGAAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44959057 274 + 71252344 GTTTCCGCCCATCTTCAAGAGATTTCTCCAGGGTGCTTGGATGAGCATCATAACATTTTCATCATTTTGCCACTGGAGGGCTCAATGGCCTTTTTAA--TGTTTCTTTTGGGAGACCACATATTACATTTGTATAACAGTCAGA-TTT--GAGACCAAGTTTTCG--CTC--TTTTTTGAGAAAATCTGTTTTT-----------------------------------------GGGAGTACGGTTAGGTGCATG---------------ATAGCCAAAAAGCTTT-TGTAAATGCCCTGAAAGATAGAAA--C--T--TGTCATAGCTGCATGTCTACTGAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 323591 274 - 1393929 GTTTCTGCCCGTCTTCAAGAGGTTTCTCCAGGGTGCTTGGATGAGCATCATAACATTTTCATCATTTTGCCACTGGAGGGCTCAATGGTCTTTTTGA--TGTTTCTTTTAGGAGGCCAAATATTACATTTGTGTAACAGTAAGA-TTT--GAGACCAAGTTTTCT--CTC--TTTTTTGAGAAACTCTGTTTTT-----------------------------------------GGGAGTACAGTTAGGTGCATG---------------ATAGCCAAAAAGCTTT-TGTAAATGCCCTGAAAGATGGAAA--C--T--TGTCATAGCTACATGTCTACTGAAAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1399910 274 - 15889662 GTTTCTGCCTGTCTTCAAGAGATTTCTCCAGGGTGCTTGGATGAGCATCATAACATTTTCATCATTTTGCCACTGGAGGGCTCAATGGCCTTTTTAA--TGTTTCTTTTAGGAGACCAAATATTACATTTGTGTAACAGTGAGA-TTT--GTGACCAAGTTTTCT--CTC--TTTTTTGAGAAAATCTGTTTTT-----------------------------------------GGGAGTACAGTTAGGTGCATG---------------ATGGCCAAAAAGCTTT-TGTAAATGCCCTGAAAGATGGAAA--T--T--TGTCATAGCTGCATGTCTACTGAAAT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 558145 290 - 10520994 GTTTCCACCTGTCTTCAAGAGAGTTCTCCAGGGTGTATGGATGTGCATCATAATATTTACACAATCTTGCCACTGGAGGGCTCAATGGCCTTTTTGA--TGTTTCTTTTAGGAGACCAGATCTTAGGTTTGCATAAC----AGACTTT--GAGACAAAGTTTTTT--TTCCTTCTTTTGAGAAAAACTGTTTTG-----------------------------------------AAGAGTACAGTTAGGTTTCCAAGTAGATGGGTGACTACAGCCAAAAAGCTTT-TGTAAATACCCTTAAAGATGGAAA--CTCT--TGTCACTGCTACATGTAAACTGAAAT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1280380 294 - 29863360 GTTCCCACTTATCTTCA--AGTGTCCTCCAGGGTGCATGGATGTGCATTTTAACATTTTCATAATTTTGCCACTAGAGGGCTCAATGGCCTTTTAAA--TGTTTCTTTTAGGGTACCAAATCTTATGTCTGTATAACAGTAAGATTTT--GAGACAAATTTTTTTTCTCCTTTTCTTTAAGAAAACCTGTTTTG-----------------------------------------AGTGGTATAGTAAGGTGTCTGAATGAATGGGTCACTACAGCCAAAAAGCTTT-TGTAAATAACCTCAAAGATGGAAA--TTCT--TGTCATGGCTGCAAATAAATTGAAAT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76433507 279 + 120421639 GTTTCCAT--GGCTTTAG-----CTCTCTAGGGTGTCTGGCTAT---TCATAACATTTTCATAATTTTACCACTGGAGGGCTCAGTGCGTTTTCAAA--TGTCTTTTCTG-GGGATCATATTTTATATTTATACAATAGTGGGACTTT--GAGACCAAGATATCT--CTCC-TCGTTTGAGAAA-CCTGTTTC-------------------------------------------AGTATATGGCTTGGTGCCCACGAGTATGGTTGCC-ATAGGCATAATGCTTTCCATAAATGCCCTCAAAGATGTAAA--C--TTCTGTTACTGCTACATGCAAAATGAAGT i mm10.chr13 C 0 I 1603 s canFam3.chr3 14297918 320 + 91889043 ----------------TGTAGAGTTCTTTAGGGTGCTTGCATGTGCCTTGTATCATTTTCATAATTTTACCACTGGAGGGCTCAATGGCCTTTTTAA--TGTCTCTTTTAAGAGACCAAATTTTACATTTGTGCAACAGTAAGA-CTTAAGAGATAAAAAATTTT--CTCCCTCTTTTGAAAAAATCTGTTTGGTGTTtttttgttttgtttttgtttttgtttttgtttGGCGAGGGTCTACATTTCAGTATCTAAGTGTATGTGTCATTTCAGGCAAAATGTTTT-CATAACTGCCCTCAAAGATGGAAA--G--TCCTGCCATTGCTGTATGTATACTAAAAT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1215700 289 - 11655695 CTTTCTGCCTGTCTTCAAGAGAGTTCTCCAGGGTGCTTGGATGCACATTATAACATTGTCATAATTTTACCACTGGGTGGCTCAATGGGGCTTTCAA--TGTTTCTTTCAGCAAATCAAATCTTGTGTTTGTATGACAGTGAGACTTT--GAGATAAGGCTTTTT--CTCTCTCTTTTGAGAAAAC---TTTGG-----------------------------------------GGCGGTTCATTTAGATACCAG--TGGATGTCTCACTACAGCCATAAAACTTT-GGTAAACACCCTCAGAGGTGGAAAATC--T--TATCATTGCCGCATGTCAACTGAAAT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84814367 2697 + 108143057 I a score=3156090.000000 s hg38.chr5_GL383530v1_alt 15540 251 + 101241 CAAAAAGGATGCCATTCATC-TCT-C-CCCAGAGAATACAAGGGAATTGAGATTATACCGAGCAAGGCTTGTGCTGAGTTAGATGTGC-TGCATATACGCGGTGTGCTTG--TGTATGTATGCTGGTGGCAGTGTGGA-AGGTGGTGGAATAGTGAGGGCTTAGGGGTCTG-------TAGTCATCCAGGAATTGTATGATTAATGTAGTTGGTATGAGAATGAGAATAATTTTAAGGACTAATTGGAAGAATATGAGGCTTGGT s panTro5.chr5 20244363 251 + 181907262 CAAAAAGGATGCCATTCATC-TCT-C-CCCAGAGAATACAAGGGAATTGAGATTATACCGAGCAAGgcttgtgctgagttagatgtgc-tgcatatatgcggtgtgcttg--tgtatgtatgctggtggcagtgtgGA-AGGCGGTGGAATAGTGAGGGCTTAGCGGTCTG-------TAGTCATCCAGGAATTGTATGATTAATGTAGTTGGTATGAGAATGGGAATAATTTTAAGGACTAATTGGAAGAATATGAGGCTTGGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20261675 251 + 183735486 CAAAAAGGATGCCATTCATC-TCT-C-CCCAGAGAATACAAGGGAATTGAGATTATACCGAGCAAGGCTTGTGCTGAGTTAGATGTGC-TGCATATACGCGGTGTGCTTG--TGTATGTATGCTGGTGGCAGTGTGGA-AGGCGGTGGAATAGTGAGGGCTTAGCGGTCTG-------TAGTCATCCAGGAATTGTATGATTAATGTAGTTGGTATGAGAATGGGAATAATTTTAAGGACTAATTGGAAGAATATGAGGCTTGGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4747502 251 - 13748885 CAAAAAGGATGCCATTCATC-TCT-C-CCCAGAGAATACAAGGGAATTGAGATTATACCGAGCAAGGCTTGTGCTGAGTTAGATGTGC-TGCATATACGCGGTGTGCTTG--TGTATGTATGCTGGTGGCAGTGTGGA-AGGCAGTGGAATAGTGAGGGCTTAGGGGTCTG-------CAGTCATCCAGGAATTGTATGATTAATGTAGTTGGTATGAGAATGGGAATAATTTTAAGGACTCATTGGAAGAATATGAGGCTTGGT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53782808 251 - 163208435 CAAAAAGGATGCCATTCATT-TCT-C-CCCAGAGAACAAAAGGGAATTGAGATTATACCGAGCAAAGCTTGTGCTGAGTTAGATGTGC-TGCATATATGCGGTGTGCTTG--TGTGTGTATTCTGGTGGCAGTATGGA-AGGCAGTGGAATAGTGAGGGCTTAGGGGTCTG-------TAGTCATCCAGGAATTGTATGATTAATGTAGTTGATATGAGGATGGGAATAATTTTAAGGACTAATTGGAAGAATATGAGGCTTGGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87810114 251 - 180051392 CAAAAAGGATGCCATTCGTC-TCT-C-CCCAGAGAATACAAGGGACTTGAGATTATACCGAGCAAGGCTTGTGCTGAGTTAGATCTGC-TGCATATACGCCGTGTGCTTG--TGTGTGTATTCTGGTGGCAGTATGGA-AAGCAGTGGAATAGTGAAGGCTTAGGGATCTG-------TAGTCATTCAGGAATTGTATGATTAGTGTAGTTGGTATGGGAATGGGGATAATTTTAAGGACTAATTGGAAGAATATGAGGCTTGGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87914520 251 - 181584905 CAAAAAGGATGCCATTCGTC-TCT-C-CCCAGAGAATACAAGGGACTTGAGATTATACCGAGCAAGGCTTGTGCTGAGTTAGATCTGC-TGCATATACGCCGTGTGCTTG--TGTGTGTATTCTGGTGGCAGTATGGA-AAGCAGTGGAATAGTGAAGGCTTAGGGATCTG-------TAGTCATTCAGGAATTGTATGATTAGTGTAGTTGGTATGGGAATGGGGATAATTTTAAGGACTAATTGGAAGAATATGAGGCTTGGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1137389 251 - 8785636 CAAAAAGGATGCCATTCGTC-TCT-C-CCCAGAGAATACAAGGGACTTGAGAATATACCGAGCAAGGCTTGTGCTGAGTTAGATCTGC-TGCATATACGCCGTGTGCTTG--TGTGTGTATTCTGGTGGCAGTATGGA-AAGCAGTGGAATAGTGAAGGCTTAGGGATCTG-------TAGTCATTCAGGAATTGTATGATTAATGTAGTTGGTATGGGAATGGGGATAATTTTAAGGACTAATTGGAAGAATATGAGGCTTGGT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1605984 251 + 27333823 CAAAAAGGATGCCATTCATC-TCT-C-CCCAGAGAATACAAGGGACTTGAGATTATACCGAGCAAGGCTTGTGCTGAGTTAGATCTGC-TGCATATACGCCGTGTGCTTG--TGTGTGTATTCTGGTGGCAGTATGGA-AAGCAGTGGAATAGTGAGGGCTTAGGGATCTG-------TAGTCATTCAGGAATTGTATGATTAATGTAGTTGGTATGGGAATGGGGATAATTTTAAGGACTAATTGGAAGAATATGAGGCTTGGT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1876081 251 - 91010382 CAAAAAGGATGCCATTCATC-TCT-C-CCCGGAGAATACAAGGGACTTGAGATTATACCGAGCAAGGCTTGTGCTGAGTTAGATCTGC-TGCATATACGCCATGTGCTTG--TGTGTGTATTCTGGTGGCAGTATGGA-AAGCAGTGGAATAGTGAGGGCTTAGGGATCTG-------TAGTCATTCAGGAATTGTATGATTAATGTAGTTGGTATGGGAATGGGGATAATTGTAAGGACTAATTGGAAGAATATGAGGCTTGGT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1987166 251 + 5179401 CAAAAAGGATGCCATTCATC-TCT-C-CCCAGAGAATACAAGGGACTTGAGATTATACCGAGCAAGGCTTGTGCTGAGTTAGATCTGC-TGCATATACGCCGTGTGCTTG--TGTGTGTATTCTGGTGGCAGTATGGA-AAGCAGTGGAATAGTGAGGGCTTAGGGGTCTG-------TAGTCATTCAGGAATTGTATGATTAATGTAGTTGGTATGGTAATGGGGATAATTTTAAGGACTAATTGGAAGAATATGAGGCTTGGT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7692902 251 - 21726897 CAAAAAGGATGCCATTCATC-TCT-C-CCCAGAGAATACAAGGGACTTGAGATTATACCGAGCAAGGCTTGTGCTGAGTTAGATCTGC-TGCATATACGCCATGTGCTTG--TGTGTGTATTTTGGTGGCAGTATGGA-AGGCAGTGGAATAGTGAGGGCTTAGGGGTCTG-------TAGTCATTCAGGAATTATATGATTAATGTAGTTGGTATGGGAGTGGGAATAATTTTAAGGACTAATTGGAAGAATATGAGGCTTGGT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112513512 247 + 204313951 AAAAAAGGGTGTCATTCATC-TCT-C-CCCAGAGAATACAAGGCAATTGAGATTATATGGAGCAAGGCTTGTGCTGAGTTAGACGTGC-TGTGTATATGCAGTGTCCTTA--TATGTGTATTCTAGTGGCAGTATGGA-AAGCAATGTAAT----AGGGCTTAGGGGTCTG-------TAGTCATCCAGGAATTGTATGATGAATGTAGTTGGGATGGGAATGGGAATGATTTTAGGAACGAATTGAAAGAACATGGGGCTTGGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44959331 251 + 71252344 CAAAAGGGGCGTCATTCATT-TCT-C-CCCAGAGAATACAAGGGAATTGAGATTATATGGAGCAAGGCTTGTGCTGAGTTAGACGTGC-TGTGTGTATGCAGTGTCCTTA--TATGTGTATTCTGGTGGCAGTATGGA-AAGCAATGTAATAGAGAGGGCTTAGGGGTCTG-------TAGTCATCCAGGAATTGTATGACGAATGTAGTTGGGATGGGAATGGGAATGATTTTAGGGACTAATTGAAAGAACATGGGGCTTGGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 323865 251 - 1393929 CAAAAGGGACATCATTCATC-TCT-C-CCCAGAGAATACAAGGGAATTGAGATTACATGGAGCAAGGCTTGTGCTGAGTTAGACGTGC-TGTGTGTATGCAGTGTCCTTA--TATGTGTATTCTGGTGGCAGTATGGA-AAGCAATGTAATAGAGAGGGCTTAGGAGTCTG-------TAGTCATCCAGGAATTGTATGATGAATGTAGTTGGGATGGGAGTGGGAATGATTTTAGGGACTAATTGAAAGAACATGGGGCTTGGT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1400184 251 - 15889662 CAAAAAGGATGTCATTCATC-TCT-C-CCCAGAGAATACAAGGGAATTGAGATTATATGGAGCAAGGCTTGTGCTGAGTTAGACGTGC-TGTGTATATACAGTGTCCTTA--TATGTGTATTCTGGTGGCAGTATGGA-AAGCAATGTAATAGAGAGGGCTTAGGGGTCTG-------TAGTCATCCAGGAATTGTATGATGAATGTAGTTGGGATGGGAATGGGAATGATTTTAGGGACTAATTGAAAGAACACGGGGCTTGGT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 558435 236 - 10520994 CAAATAGGATG-CGCTCATCTCTC-T-CCCAGGGAATACAAGGGAATTGAGACTATACTGAGGAAGGCTTGTGTTCAGTTAGACGTGCATGTGCTCGTGTGGTGTGCTCG--TGTGTGTATTTTCGTAACAGTATGGA-AAGCAGTGGAATAGTGAGGGCTTAG-----------------------AGGAATTGTATGATTAATGTAGTTGGGATGGGAATGGGAATATTTTAAAGGAAAAATTGAAAGAATATGGGGGTGGGT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1280674 235 - 29863360 CAAGTAGGATG-CACTCATC-CCC-T-TCCAGGGAATACAAGGGAACTGAAACTATGCTGAGCAAAGTTTTTTCTCAGGTAGAGGTGCGTGTGCACCTGCAGTGTGCTTGCCCTTGTGTATTACTGTGGCAGTGTGGG-AA-CAGCAGCACAGTGGGGGCTTAG-----------------------AGGAATTATATGATTAATGTGGTTGGCATGGGAATGGGAATATGTTTAAGG-AAAACTGAAAGAATATGGGGTGGAGT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14298238 253 + 91889043 CAAATAGGCTG-CACTAACC-TCTAT-CCCAAAGAATACAAGGGAATCGGGATTGTATCAAGCAAGACTTTCAGTG-------TATGCGTGTGCCCTGGTGGTACACTTG--TGTGTATCTGCTGGTGGTGGGGTGGAGAAGGGGTGAAGGAGGGATGGAGGAGGAGTCTGAGAGCTCTGCGCGTCCAAGAATTACATGACTAATGTAGTTGGGGCAGGAATGGGAATATTTTTAAGGACTAATTGAAAGGATATAGGAGTGGGT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1215989 239 - 11655695 CAAATTGGATG-CACGGATT-TCT-CTCCCAGAGAATACAAAGGAATAGCCTTTATATTGAACAAGACTTTTGCTCAGATGTGTATA--TGCATATATGT-ATGTGCATG--CACGTGTAGTCTGGTGGCAGTGTGCAGAAACAGTGGAGTAGGGAGG---------TCTG-------CAATAGTCCAAGAATTCTATGATTAAAGTATTTGG-GTGGAAATGGGAATAA-TTAAAGGACTAATTGAAGAGATGTGGGGGTAGAA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84814367 2697 + 108143057 I e mm10.chr13 76433786 1603 + 120421639 I a score=1319505.000000 s hg38.chr5_GL383530v1_alt 15791 103 + 101241 ATCAGGCGACTAGTGATCATGCA-TTGTTCCAGGATT-CCTGCTGCATGTTC----GGTTATAAAGGTTGTGACGGCAGTTCTGCTTTTCCTGAA--TGAGCTATGTGTGC s panTro5.chr5 20244614 103 + 181907262 ATCAGGCGACTAGTGATCATGCA-TTGTTCCAGGATT-CCTGCTGCATGTTC----GGTTATAAAGGTTGTGACAGCAGTTCTGCTTTTCCTGAA--TGAGCTATGTGTGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20261926 103 + 183735486 ATCAGGCGACTAGTGATCATGCA-TTGTTCCAGGATT-CCTGCTGCATGTTC----GGTTATAAAGGTTGTGACAGCAGTTCTGCTTTTCCTGAA--TGAGCTATGTGTGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4747753 107 - 13748885 ATCAGGCGACTAGTGATCATGCA-TTGTTCCAGGATT-CCTGCTGCATGTTCAGTTAGTTATAAAGGTTGTGACAGCAGTTCTGCTTTTCCTGAA--TGAGCTATGTGTGC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53783059 103 - 163208435 ATCAGGCGACTAGTGATCATGCA-TTGTTCCAGGATT-CCTGCTGCATGTTC----TGTTATAAAGGTTGTGACAGCAGTTCTGCTTTTCCTGAA--TGAGCTATGCGTGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87810365 104 - 180051392 ATCAGGCGACTAGTGATCATGCAGTTGTTCCAGGATT-TCTGCTGCATGTTC----TGTTATAAAGGTTGTGACAGCAGTTCTGCTTTTCCTGAA--TGTTCTATGTGTGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87914771 104 - 181584905 ATCAGGCGACTAGTGATCATGCAGTTGTTCCAGGATT-TCTGCTGCATGTTC----TGTTATAAAGGTTGTGACAGCAGTTCTGCTTTTCCTGAA--TGTTCTATGTGTGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1137640 104 - 8785636 ATCAGGCGACTAGTGATCATGCAGTTGTTCCAGGATT-TCTGCTGCATGTTC----TGTTATAAAGGTTGTGACAGCAGTTCTGCTTTTCCTGAA--TGTTCTATGTGTGC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1606235 104 + 27333823 ATCAGGCGACTAGTGATCATGCAGTTGTTCCAGGATT-CCTGCTGCATGTTC----TGTTATAAAGGTTGTGACAGCAGTTCTGCTTTTCCTGAA--TGTTCTATGTGTGC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1876332 104 - 91010382 ATCAGGCGACTAGGGATCATGCAGTTGTTCCAGGATT-CCTGCTGCGTGTTC----TGTTATAAAGGTTGTGACAGCAGTTCTGCTTTTCCTGAA--TGTTCTATGTGTGC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1987417 104 + 5179401 ATCAGGCGACTAGTGATCATGCAGTTGTTCCAGGATT-CCTGCTGCATGTTC----TGTTATAAAGGTTGTGACAGCAGTTCTGCTTTTCCTGAA--TGTTCTATGTGTGC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7693153 104 - 21726897 ATCAGGTGACTAGTGATCATGCAGTTGTTCCAGGATT-CCTGCTGTATGTTC----TGTTATAAAGGTTGTGACAGCAGTTCTGCTTTTCCTGAA--TGTTCTATGTGTGC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112513759 105 + 204313951 GTCAGGTGACTAGTGATCACGGA-TCATTCCAGGATT-CCTGCTGCATATTC----TGTTATAAAGGTTGTGACAGCAGTTCTGCTTTTCCTGCAGTTTTGCTATGTGTGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44959582 105 + 71252344 GTCAGGTGACTAGTGATCACAGA-TCATTCCAGGATT-CCTACTGTATGTTC----TGTTATAAAAGTTGTGACAGCAGTTCTGCTTTTCCTGCAGTTTTGCTGTGTATGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 324116 105 - 1393929 GTCGGGTTACTAGTGATCACAGA-TCATTCCAAGATT-CCTGCTGCATGTTC----TGTTATAAAGGTTGTGACAGCAGTTCTGCTTGTCCTGCAGTTTTGCTATGTATGT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1400435 105 - 15889662 GTCAGGTGACTAGTGATCACAGA-TCGTTCCAGGATT-CCTGCTGCATGTTC----TGTTATAAAGGCTGTGACAGCAGTTCTGCTTTTCCTGCAGTTTTGCTATGTGTGT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 558671 99 - 10520994 GTTAGGGGACTAGTGGCCATGGA-TGGTTCCAGGATT-TCTGCTGCATGTTC----TGTTGTAAAGATTAGGATAGCGGATCT--TTTTTCTGGA--TGTGTTATATGC-- i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1280909 94 - 29863360 ATCAGGGGGCTAGGGATCATGGA-AGGTTCCAGAATT-CCTACTGTGTGTTC----TGTTGTAAAGGTTGCGGTAGCAGTTC---TTTCCCTGGA--TGTGTTAC------ i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76435389 101 + 120421639 ATCAGGAGACTAGTGTCCATGGA-TAGCTCCAGGATT-TCTGCCACATGCTC----TGTTCT--AGTTTATGGTAGTACTTTTTTTCTTCCTGAA--TATGTAATATGTGT i mm10.chr13 I 1603 C 0 s canFam3.chr3 14298491 94 + 91889043 ---GGGAAAGTAGTGCTCATGGA-TAGTTCCAGGGCT---TGTTGGTATTTT----TGTTGTAAAGACTGTGACTGCAGTTC----TTTCCTGCA--TGTGTTACATGCAT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1216228 100 - 11655695 GGCTGGGGAGTAGTGGTCATGAG-CAGTTTCAGGATTCCCTGTTTCATGTTC----TTTTGTAAAGATTATGATCACAATTC----GTTTCTGGA--TGTGTTACATGTGC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84814367 2697 + 108143057 I a score=501704.000000 s hg38.chr5_GL383530v1_alt 15894 30 + 101241 CTGTGGTCCAACCTCTCTGAGGCTGGTCCT s panTro5.chr5 20244717 30 + 181907262 CTGTGGTCCAACCTCTCTGAGGCTGGTCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20262029 30 + 183735486 CTGTGGTCCAACCTCTCTGAGGCTGGTCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4747860 30 - 13748885 CTGTGGTCCAACCTCTCTGAGGCTGGTCCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53783162 30 - 163208435 CTGTGGTCCAACCTCTCTGAGGCTGGTCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87810469 30 - 180051392 CTGTGGTCCAACCTCTCTGAGGCTGCTCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87914875 30 - 181584905 CTGTGGTCCAACCTCTCTGAGGCTGCTCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1137744 30 - 8785636 CTGTGGTCCAACCTCTCTGAGGCTGCTCCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1606339 30 + 27333823 CTGTGGTCCAACCTCTCTGAGGCTGGTCCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1876436 30 - 91010382 CTGTGGTCCAACCCCTCTGAGGCTGGTCCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1987521 30 + 5179401 CTGTGGTCCAACCTCTCTGAGGCTGGTCCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7693257 30 - 21726897 CTGTGGTCCAAACTCTCTAAGCCTGGTCCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112513864 30 + 204313951 CTGTGGTCCAGCCTCTCTGAGGCTGGTCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44959687 30 + 71252344 CTGTGGTCCAACCTCTCTGTGGCTGGTCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 324221 30 - 1393929 CTGTGGTCCAACCTCTCTGAGGCTGGCCCT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1400540 30 - 15889662 TTGTGGTCCAGCCTCTCTGAGGCTGGTCCT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84817064 30 + 108143057 CTGTGGTCCAACCTCTCTGAGGCTGGTCCT i micMur3.chr12 I 2697 I 248 s proCoq1.NW_012147189v1 558770 30 - 10520994 CCATGGTCCAACCTCTCTGAGGCTGGTGAT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1281003 30 - 29863360 ATGTGGTCCAACCTCTCTGAAGCTGGTGAT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76435490 29 + 120421639 -TTTGAGCCAAAATCTTAAAGGATAGCACT i mm10.chr13 C 0 C 0 s canFam3.chr3 14298585 30 + 91889043 ATGTGATCCTGCTTCTCTGAGGCTGATGCG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1216328 30 - 11655695 CTGTCTCCTAACCTCTCTCAAGCTGATCCT i dasNov3.JH570378 C 0 C 0 a score=3787798.000000 s hg38.chr5_GL383530v1_alt 15924 291 + 101241 GGATCCTGGACTGAGCAAGTGAACTCTGATATGAGTGACACATTGATTTGGCATCTGCGTA-A---TTTTTTGTGATGTTT--AGGA-----------GTAAC-------AATGAGGTGTTATG-----AAAA-AAGTT-----GGAAACAGTGTTAGCCCCCATGCAAAAGTATAAAATCAACATAAAGCAGAGAGATAGAAATATCAGAATGCCTCTCCCAGAATGTAGCAAAAACGCAAT--TCTATTACATTTGGTATATGAT----Taagagttaactataaactaactgaaagattcacg----tatttaatgattaataataatatacc s panTro5.chr5 20244747 291 + 181907262 GGAGCCTGGACTGAGCAAGTGAACTCTGATATGAGTGACACATTGATTTGGCATCTGCATA-A---TTTTTTGTGATGTTT--AGGA-----------GTAAC-------AATGAGGTGTTATG-----AAAA-AAGTT-----GGAAACAGTGTTAGCCCCCATGCAAAAGTATAAAATCAACGTAAAGCAGAGAGATAGAAATATCAGAATGCCTCTCCCAGAATGTAGCAGAAACCCAAT--TCTATTACATTTGGTATATGAT----Taagagttaactataaactaactgaaagattcacg----tatttaatgattaataataatatacc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20262059 291 + 183735486 GGAGCCTGGACTGAGCAAGTGAACTCTGATATGAGTGACACATTGATTTGGCATCTGCATA-A---TTTTTTGTGATGTTT--AGGA-----------GTAAC-------AATGAGGTGTTATG-----AAAA-AAGTT-----GGAAACAGTGTTAGCCCCCATGCAAAAGTATAAAATCAACGTAAAGCAGAGAGATAGAAATATCAGAATGCCTCTCCCAGAATGTAGCAGAAACCCAAT--TCTATTACATTTGGTATATGAT----Taagagttaactataaactaactgaaagattcacg----tatttaatgattaataataatatacc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4747890 291 - 13748885 GGAGCCTGGACTGAGCAAGTGAACTCTGATATGAGTGACACATTGATTTGGCATCTGCGTA-A---TTTTTTGTGATGTTT--AGGA-----------GTAAC-------AATGAGGTGTTATG-----AAAA-AAGTT-----GGAAACAGTGTTAGCCCCCATGCAAAAGTGTAAAATCAACATAAAGCAGAGAGATAGAAATATCAGAATGCCTCTCCCAGAATGTAGCAGAAACCCAAT--TCTATTACATTTGGTTTATGAT----TAAGAGTTAACTATAAACTAACTGAAAGATTCACG----TATTTAATGATTAATAATAATATACC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53783192 291 - 163208435 GGAGCCTGGACTGAGCAAGTGAACTCTGATATGAGTGACACATTGATTTGGCATCTGCATA-A---TTTTTTGTGATGTTT--GGGA-----------GTAAC-------AATGAGGTGTTATG-----AAAA-AAGTT-----GGAAACAGTGTTAACCCCCATGCAAACGTATAAAATCAACATAAAGCAGAAGGATAAAAATTCCAGAATGCCTCTCCCAGAATGTAGCGGAAACCCAAT--TCTATTACATTTGGTTTGTGAT----Taagagttaactataaactaactgaaagattcaca----tatttaatgattaataataatatgcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87810499 291 - 180051392 AGAGCCTGGACTGAGCAAGTGAACTCTGATATGAGTGACACATTGATTTGGCATCTGCATA-A---TTTTTTGTGATGTTT--AGGA-----------GTAAC-------AATGAGGTGTTATG-----AAAA-AAGTT-----GGAAACAGTGTTAGCCCCCATGCAAAAGTAAAAAATCAACATAAAGCAGAGAGATAGACGTATCGGAATGCCTCTCCCAGAATGTAGCAGAAACCCAAT--TCTATTACATTTGGTTTATGAT----Taagagttaactataaactaactgaaagattcaca----tatttaatgattaataataatatgcc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87914905 291 - 181584905 AGAGCCTGGACTGAGCAAGTGAACTCTGATATGAGTGACACATTGATTTGGCATCTGCATA-A---TTTTTTGTGATGTTT--AGGA-----------GTAAC-------AATGAGGTGTTATG-----AAAA-AAGTT-----GGAAACAGTGTTAGCACCCATGCAAAAGTAAAAAATCAACATAAAGCAGAGAGATAGACGTATCGGAATGCCTCTCCCAGAATGTAGCAGAAACCCAAT--TCTATTACATTTGGTTTATGAT----Taagagttaactataaactaactgaaagattcaca----tatttaatgattaataataatatgcc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1137774 291 - 8785636 AGAGCCTGGACTGAGCAAGTGAACTCTGATATGAGTGACACATTGATTTGGCATCTGCATA-A---TTTTTTATGATGTTT--AGGA-----------GTAAC-------AATGAGGTGTTATG-----AAAA-AAGTT-----GGAAACAGTGTTAGCCCCCATGCAAAAGTAAAAAATCAACATAAAGCAGAGAGATAGACGTATCAGAATGCCTCTCCCAGAATGTAGCAGAAACCCAAT--TCTATTACATTTGGTTTATGAT----Taagagttaactataaactaactgaaagattcaca----tattcaatgattaataataatatgcc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1606369 291 + 27333823 AGAGCCTGGACTGAGCAAGTGAACTCTGATATGAGTGACACATTGATTTGGCATCTGCATA-A---TTTTTTGTGATGTTT--AGGA-----------GTAAC-------AATGAGGTGTTATG-----AAAA-AAGTT-----GGAAACAGTGTTAGCCCCCATGCAAAAGTAAAAAATCAACATAAAGCAGAGAGATAGACGTATCGGAATGCCTCTCCCAGAATGTAGCAGAAACCCAAT--TCTATTACATTTGGTTTATGAT----Taagagttaactataaactaactgaaagattcaca----tatttaatgattaataataatatgcc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1876466 291 - 91010382 AGAGCCTGGACTGAGCAAGTGAACTCTGATATGAGTAATACATTGATTTGGCACCTGCATA-A---TTTTTTGTGATGTTT--AGGA-----------GTAAC-------AATGAGGTGTTATG-----AAAA-AAGTT-----GGAAACAGTGTTAGCCCCCATGCAAAAGTAAAAAATCAACATAAAGCAGAGAGATAGACGTATCGGAATGCCTCTCCCAGAATGTAGCAGAAACCCAAT--TCTATTACATTTGGTTTATGAT----Taagagttaactgtaaactaactgaaagattcaca----tatttaatgattaataataatatgcc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1987551 291 + 5179401 AGAGCCTGGACTGAGCAAGTGAACTCTGATATGAGTGACACATTGATTTGGCATCTGCATA-A---TTTTTTGTGATGTTT--AGGA-----------GTAAC-------AATGAGGTGTTATA-----AAAA-ATGTT-----GGAAACAGTGTTAGCCCCCATGCAAAAGTAAAAAATCAACATAAAGCAGAGAGATAGACGTATCGGAATGCCTCTCCCAGAATGTAGCAGAAACCCAAT--TCTATTACATTTGGTTTATGAT----Taagagttaactataaactaactgaaagattcaca----tatttaatgattaataataatatgcc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7693287 291 - 21726897 AGAGCCTGGACTGAGCAAGTGAACTCTGATATGAGTGACACATTGATTTGGCATCTGCATA-A---TTTTTTGTGATGTTT--AGGA-----------GTAAC-------AATGAGGTGTTATG-----AAAA-ATGTT-----GGAAACAGTGTTAGCCCCCAAGCAAAAGTAAAAAGTCAACATAAAGCAGAGAGGTAGATGTATCAGAATGCCTCTCCCAGAATGTAGCAGAAACCCAAT--TCTATGACATTTGGTTTATGAT----Taagagttaactataaactaactgaaagattcaca----tatttagtgattaataataatatgcc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112513894 294 + 204313951 GGAGCCTGGATTGAGCAAGGGAACTCTGATATGAGTGACACATCGATTTGGCATCTAGATA-A----TTTTTATGATGGTT--AGGA-----------GTAAC-------AATGAGGTGTTATG-----AAAA-AAGTT-----GGAAACAGTGTTAGCCCCCATGCAAAAATATAACATCAACATGAAGCAGAGAGATAGAAATATCAGAATGCCGCTCCCAGAATGCAACAGAAACTCAAT--TCTATTACACTTGGTTTATGATTTAGTAAGACTCATCTATAAATTAACTGAAGGATTCACA----TATTTAATGATTAATAATACTATGCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44959717 294 + 71252344 GGAGCCTGGATTGAGCAAGGGAACTCTGATATGAGTGACACATCGATTTGGCATCTCCATA-A----TTTTTATGATGGTT--AGGA-----------GTAAC-------AGTGAGGTGTTATG-----AAAA-AAGTT-----GGAAACAGTGTTAGCCCCCATGCAAAAATATAACATCAACATAAAGCAGAGAGATAGGAATATCAGAATGCCTCTCCCAGAATGTAACAGAAACTCAAT--TCTATTACAGTTGGTTTATGATTTAGTAAGACTCATCTATAAATTAACTGAAGGATTCACA----TATTTAATGATTAATAATAATACGCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 324251 291 - 1393929 GGAGCCTGGATTGAGCAAGGGAACTC---TATGAGTAACACATCGATTTGGCATCTGCATC-A---TTTTTTATGATGGCA--AGGA-----------GTAAC-------AATGAGGTGTTATG-----AAAA-AAGTT-----GGAAACAGTGTTAGACCCCATGC-AAAATATAACATCAACATAAAGCAGAGAGAGAGAAATATCAGAATGCCTCTCCCAGAATGTAACAGAAACTCAAT--TCTATTACATTTGGTTTATGATTTAGTAAGACTCATCTATAAATTAACTGAAGGATTCACA----TATTTAATGATTAATAATAATATGCC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1400570 295 - 15889662 GGAGCCTGGATTGAGCAAGGGAACTCTGATATGAGTGACACATCGATTTGGCATCTGCATA-A---TTTTTTATGATGGTT--AGGA-----------GTAAC-------AATGAGGTGTTATG-----AAAA-AAGTT-----GGAAACAGTGTTAGCCCCCATGCAAAAATATAACATCAACATAAAGCAGAGAGATAGAAATCTCAGAATGCCTCTCCCAAAATGTAACAGAAACTCAAT--TCTATTACATTTGGTTTATGATTTAGTAAGACTCATCTATAAATTAACTGAAGGATTCACA----TATTTAATGATTAATAATAATATGCC i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 558800 300 - 10520994 AGAGCATGGATTGAGCAAAGGAACTTTGCTGTGAGTGACATATTGACCCGGCATCGGCATA-C---TTTTTTGTAATGTTT--AGGTGGCAtt-gggggtaac-------aatgaggtgttatg-----caaa-aagtt-----ggaaacagtgttagcccccaagtgaaagtataaaatcgacataaaacaga--gatggaaagaacagaatggttctccccgaatgtagctgaaacccaat--tctgctacatttggcttatgatttagtaagacttaactataaactagttgaaggataaaca----tatttaatgatgaa---taatatgcc i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1281033 283 - 29863360 GGAGCACCAATTGAGCAAAAGAAATCTGAGGAGAGTGATACATCAATCT-GCATCTGCTTA-A---AGTTTTGTGATGTTT--AGGAGGCACT-GCGGGTAAC-----------AGGTGTTATG-----CAAA-ACACT-----GGGAACTGTGT--------------AAGTTTAAAATCAACATAAAACAAA--GATGGAAATAACAGAATGACTCTCCCTGAACGTAGCAGAAACACAAT--CCTGCTACATTTGGTTTATGATTTAGTAAGACTCAACCA-----TAGTTGAAGGATAAACATGtttatttaattatttatttttataaacc i otoGar3.GL873536 C 0 I 2875 s mm10.chr13 76435519 301 + 120421639 GAAACCT-------ATAAGTGACAACC--TATAACTGACAGGTTTATCT--CATTTACATG-A----CTTCCATGATGACT--AGGAAGCATTCAGGGATAAT-------ATCAAAATTTTATGTTTCTGAAG-AAGCCAATGAGAAAACACTGTTGGCTGTGACTTGAAAGTATACAACCAACAAAAAGCAGGGGTATGGGACTGTAAAAATGCCTCT--CAGAATGTAGCAGCCAATCAGTTATCTGCTTCGTTTGCTTTATGGTTTAATACAATGTAAGTGTAAACTAACAGAAGAGTCAACA----CCTTTAATAATAAA---TAACATACT i mm10.chr13 C 0 C 0 s canFam3.chr3 14298615 268 + 91889043 GGAGCACGGATTGAGCAAAAGAATTCTGATGTAAGTGCTACATCAGTTTGGCATCTGCACA-ATTTTTTTTTGCAGTATTT--TGGAGGCACTTGGA-GTGAC-------AATGAGGCATTATG-----CAAATAACTT-----AGAGACAGTGTTGgccctcaagtgaaaatataaaatgaacacaaagcacagagatggaaatatcaaaatggctctcccag---------------------gc--------ttgg------------taagacttaactacgaactaattgaaaaattaacataa-tatttaaaga-----aataatgtgcc i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1216358 262 - 11655695 GGAGCAGAGATTGAGCCAAGGAATTCTGACGTGAGTGCCATGTCGATTTGGCAACTCCAGATA---TTTTGTGGGATGGTTTCAGAG-----------GCATCTGGGGTAAATAAGTTCCTCTG-----CAGA-AACTT-----GGATGCAATGTTGGC-CCCAAATGAAAGTGTAAAATCAGTATAAAGCTGAGGAGCAGAAACATCAGAATTATTctcccaaa--------------------tttag---------------------caagacttgactgtaatgtgatggaaggattaacg----tatttaaagataaa---taatatgct i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84817094 248 + 108143057 I a score=2849192.000000 s hg38.chr5_GL383530v1_alt 16215 244 + 101241 aatccaaagacagatggctgctc-agactgaaacctccttgcaggtagcggagagtcagagaaaga-aactgtggagaggctggcctaagaactgcccaaggagaccggcatggg------aacgtcaattcttgtgactttctca-cat----ggcgatggatgtttgtttcttctaaaattttgaatcactaacaaatttcccttgttccgatttcatgctgcttctgctaca-tttggtttatgagttggccttt s panTro5.chr5 20245038 244 + 181907262 aatccaaagagagatggctgctc-agactgaaacctccttgcaggtagcggagagtcagagaaaga-aactgtggagaggctggcctaagaactgcccaaggagaccggcatggg------aacgtcagttcttgtgactttctca-cat----ggcgatggatgtttgttgcttctaaaattttgaatcactaacaaatttcccttgttctgatttcatgctgcttctgctaca-tttggtttatgagttggccttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20262350 237 + 183735486 aatccaaagagagatggctgctc-agactgaaacctccttgcaggtagcggagagtcagagaaaga-aactgtggagaggctggcctaagaactgcccaaggagaccggcatggg------aacgtcaattcttgtgactttctca-cat----ggcgatggatgtttgttgcttctaaaattttgaatcactaacaaatttcccttgttctgatttcatgc-------gctaca-tttggtttatgagttggccttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4748181 244 - 13748885 AATCCAAAGAGAGATGGCTGCTC-AGACTGAAACCTCCTTGCAGGTAGCGGAGAGTCAGAGAAAGA-AACTGTGGAGAGGCTGGCCTAAGAACTGCCCAAGGAGACCGGCATGGG------AACATCAGTTCTTGTGACTTTCTCA-CAT----GGCGATGGATgtttgttgcttctaaaattttgaatcactaacaaatttcccttgttctgatttcatgctgcttctgctaca-tttggtttatgagttggccttt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53783483 244 - 163208435 aatccaaagagagatggctgctc-agactgaaacctccttgcaggcaggggagagtcagagaaaga-aactgtggagaggctggcctaagaactgcccaaggagaccagcatgga------aacttcagttcttgtgactttctca-cat----ggcgatggatgtttgttgcctctaaaattttgaatcactaacaaatttcccttgttctgatttcatgctgcttctgctaca-tttggtttatgagttggccttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87810790 250 - 180051392 aatcc-gagacagatggttgctc-agactgaaacctccttacaggtaggggagagtcagagaaagataactgtggagacgctggcctaagcactgcccaaggagactggcatggaaatggaaatgtcgattcttgtgactttctca-cat----ggagatggatgtttgttgcctctaaaattttgaatcactaacacatttcccttgttctgatttcatgctgcttctgctaca-tttggtttatgatttggcctta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87915196 250 - 181584905 aatcc-gagacagatggttgctc-agactgaaacctccttacaggtaggggagagtcagagaaagataactgtggagacgctggcctaagaactgcccaaggagactggcatggaaatggaaatgtcgattcttgtgactttctca-cat----ggagatggatgtttgttgcctctaaaattttgaatcactaacacatttcccttgttctgatttcatgctgcttctgctaca-tttggtttatgatttggcctta i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1138065 250 - 8785636 aatcc-gagagagatggttgctc-agactgaaacctccttacaggtaggggagagtcagagaaagataactgtggagacgctggcctaagaactgcccaaggagactggcatgggaatggaaatgtcgattcttgtgactttctca-cat----ggagatggatgtttgttgcctctaaaattttgaatcactaacacatttcccttgttctgatttcatgctgcttctgctaca-tttggtttatgatttggcctta i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1606660 250 + 27333823 aatct-gagagagatggttgctc-agactgaaacctccttacaggtaggggagagtcagagaaagataactgtggagacgctggcctaagaactgcccaaggagactggcatggaaatggaaatgtcgattcttgtgactttctca-cat----ggagatggatgtttgttgcctctaaaattttgaatcactaacacatttcccttgttctgatttcatgctgcttctgctaca-tttggtttatgatttggcctta i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1876757 249 - 91010382 aatcc-gagagagatggttgctc-agactgaaacctccttacaggtaggggagagtcagagaaagataactgtggagacgctggcctaagaactgcccaaggagactggcatggaaatgg-aatgtcgattcttgtgactttctca-cat----ggagatggatgtttgttgcctctaaaattttgaatcactaacacatttcccttgttctgatttcatgctgcttctgctaca-tttggtttatgatttggcctta i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1987842 250 + 5179401 aatct-gagagagatggttgctc-agactgaaacctccttacaggtaagggagagtcagagaaagataactgtggagacgctggcctaagaactgcccaaggagactggcatggaaatggaaatgtcgattcttgtgactttctca-cat----ggagatggatgtttgttgcctctaaaattttgaatcactaacacatttcccttgttctgacttcatgctgcttctgctaca-tttggtttatgatttggcctta i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7693578 244 - 21726897 aatcc-gagagagatggttgctc-agactgaaacctccttacaggtaggggagagtcagagaaagataactgtggagacactggcctaagaactgcccaaggagactggcatgga------aatgtcgattcttgtgactttctca-cat----ggagatggatgtttgttgcctctaaaattttggatcactaacacatttcccttattctgatttcatgctgcttctgctaca-tttggtttatgatttggcctta i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112514188 230 + 204313951 AATCTGAAGAGAGATGGTTGCTC-AGACTGAAACCGCCTTGCAGGT-------------AGAAAGA-AACTGTGGAGAAGCT-GCCTAACAACTCCCTAAGAAGACTAGCATGGA------AATGTCAATTCTTGTGACTTTCTCA-AAT----GGTGATGGATgtttgttgcctctgaaattttgaatcatgaacaaatttcccttgttctgatttcatgctgctactgctaca-tttggtttatgatttggccttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44960011 230 + 71252344 AATCCGAAGAGAGATGGTTGTTC-AGACTGAAACCTCCTTGCAGGT-------------AGAAAGA-AACTGTGGAGAAGCT-GCCTAAGAACTCCCCAAGGAGACTAGCATGGA------AATGTCAATTCCTGTGACTTTCTCA-CAT----GGCAATGGATGTTTATTGCCTCTGCAATtttgaatcacaaacaaattccccttgttctgatttcatgctgcttctgctaca-tttggtttaggatttggccttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 324542 230 - 1393929 AATCTGAAGAGAGATGGTTGCTC-AGACTGAAACCTCCTTGCAGGT-------------AGAAAGA-AACTGTGGAGAAGCT-GCCTAAGAACTCCCCAAGGGGACTAGCATGGA------AACCTCAATTCTTGTGACTTTCTCA-CAT----GGCAATGGATGTTTATTGCCTCTGAAATtttgaatcacaaacaaatttcccttgttctgatttcatgctgcttctgctaca-tttggtttaggatttggccgtt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1400865 230 - 15889662 AATCTGAAGAGAGATGGTTGCTC-AGACTGAAACCTCCTTGCAGGT-------------AGAAAGA-AACTGTGGAGAAGCT-GCCTAAGAACTCCCCAAGAAGACTAGCATGGA------AACGTCAATTCTTGTGACTTTCTCA-CAT----GGCAATGGATGTTTATtgcctctgaaattttgaatcacgaacaaatttcccttgttctgatttcatgctgcttctgctaca-tttggtttaggatttggccttt i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 559100 245 - 10520994 agtcagaaaggagatgattgctc-aggctgaaacctacttggaggtaggggagagtctgagaaagt-gactttggaggggcctggctaagaactgctgaagaagactggcataga------aacttcagttcttttgacttcctca-catggtgggtgatggatgcctattgcctctaaaatctggaatcactaaggaatttcccttgttacagtttcatgc---ttattctaca-attggtttatgatttggcctgt i proCoq1.NW_012147189v1 C 0 C 0 s mm10.chr13 76435820 207 + 120421639 AATCA-GCGACA------TGCTCAAGACCAGCGCCTACGTGCTGTTAGGATGGAGCCTGAGAAAGA-AGCTCTGGAGGGTCT--------------------------GTATGGGA-----AACCACAGTTCCTGTGACTT-ATCA-AAC------TGATGAAT-TCTGTTGCCTCCG--ATTTTCAGTCGTGAGGAGATTCCCCTTGCTTTTTATCTCTGCTTCTTCCGTTCTG-TTTGGTTTGTAATGTATGCTTT i mm10.chr13 C 0 C 0 s canFam3.chr3 14298883 242 + 91889043 agttggaagggagatgacttctc-agactgccacctacatgggattagagaagagtctgaaggagg-aac--tggaggagcctggctaagaactgctcatgaaggctggcatggc------agcttcagtcctcttgacacccccaccat----ggtgatcgatgcttg-tatccctgtgattctgaattgccaatgaattttccttgttttgatttcatgcttatttgactaca-tttggtctatgatttggcctTT i canFam3.chr3 C 0 I 201 s dasNov3.JH570378 1216620 230 - 11655695 aatcagagggaataagattgctc-agactgaaacctccatgggagtagggaggagtctaaga-----aaccttgaaggagcctcgctaagaattgctcaagaaggct-gtatgga------gactccagttcttgtaacttccccc-cat----ggtga-ggatgcttgttgcctctgaaattctgagttatcatcaaattcctcttgttctggtttcatacttattcagctacgttttggttt---------ctttt i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84817094 248 + 108143057 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=70275.000000 s hg38.chr5_GL383530v1_alt 16459 10 + 101241 cataga------------------------------tttg- s panTro5.chr5 20245282 10 + 181907262 cataga------------------------------tttg- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20262587 10 + 183735486 cataga------------------------------tttg- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4748425 10 - 13748885 cataga------------------------------tttg- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53783727 10 - 163208435 cataga------------------------------tttg- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87811040 40 - 180051392 catagatttgctactgcagagatttgccttacattctttg- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87915446 40 - 181584905 catagatttgctactgcagagatttgccttacattctttg- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1138315 40 - 8785636 catagatttgctactgcagagatttgccttacattctttg- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1606910 40 + 27333823 catagatttgctactgcagagatttgccttacattctttg- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1877006 40 - 91010382 catagatttgctactgcagagatttgccttacattctttg- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1988092 40 + 5179401 catagatttgctactgcagagatttgccttacattctttg- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7693822 40 - 21726897 catagatttgctactgcagacatttgccttacattctttg- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112514418 10 + 204313951 cataga------------------------------tttg- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44960241 10 + 71252344 cataga------------------------------tttg- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 324772 10 - 1393929 cataga------------------------------tttg- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1401095 10 - 15889662 cataga------------------------------tttg- i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 559345 10 - 10520994 tatgga------------------------------tttg- i proCoq1.NW_012147189v1 C 0 C 0 s mm10.chr13 76436027 10 + 120421639 CTTGCA------------------------------CTGT- i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1216850 11 - 11655695 cataga------------------------------tgttc i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14299125 201 + 91889043 I e micMur3.chr12 84817094 248 + 108143057 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=2195494.000000 s hg38.chr5_GL383530v1_alt 16469 172 + 101241 ctactgcagagaatgtactggtcatatcaatgtgaatattcagatccatatgtcagttatGGTTTGCAGATTGGCCCAGCATCT---C---GTGTggcatgctgaaggaatcaggctctgtcttagcagagtcaaaaacaaggctctggatcatggtgaattacccaaggtaaatgct s panTro5.chr5 20245292 172 + 181907262 ctactgcagagaatgtactggtcatatcaatgtgaatattcagatccatatgtcagttatGGTTTGCAGATTGGCCCAGCATCT---C---GTGTGGCATGCTGAAGGAATCAGGCTCTGTCTTAGCAGAGTCAAAAACAAGGCTGTGGATCATGGTGAATTACCCAAGGTAAATGCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20262597 172 + 183735486 ctactgcagagaatgtactggtcatatcaatgtgaatattcagatccatatgtcagttatGGTTTGCAGATTGGCCCAGCATCT---C---GTGTGGCATGCTGAAGGAATCAGGCTCTGTCTTAGCAGAGTCAAAAACAAGGCTGTGGATCATGGTGAATTACCCAAGGTAAATGCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4748435 172 - 13748885 ctgctgcagagaatgtactggtcatatcagtgtgaatattcagatccatatgtcagttatGGTTTGCAGATTGGCCCAGCATCT---C---GTGTGGCATGCTGAAGGAATCAGGCTCTGTCTTAGCAGAGTCAAAAACAAGGCTCTGGATCGTGGTGAATTACCCAAGGTAAATGCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53783737 172 - 163208435 ctactgcagagaatgtactggtcatatcagtgtgaatattcagatccatatgtcagttatGGTTTGCAGATTGGCCCAGCATCT---C---GTGTGGCATGCTGAAGGAATCAGGCTCTGTCTTAGCAGAGTCAAAAACAAGGCTATGGATCATGGTGAATTACCCAAGGTAAATGCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87811080 172 - 180051392 ctactgcagagaatgtactggtcatatcaatgtgaatattcagatccatatgtcagttatggttttcaGACTGGCCCAGCATCT---C---GTGTGGCATGCTGAAGGAATCAGGCTCTGTCTTAGCAGAGTCAAAAACAAGCCTCTGGATCATGGTGAATTACCCCAGGTGAATGCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87915486 172 - 181584905 ctactgcagagaatgtactggtcatatcaatgtgaatattcagatccatatgtcagttatggttttcaGACTGGCCCAGCATCT---C---GTGTGGCATGCTGAAGGAATCAGGCTCTGTCTTAGCAGAGTCAAAAACAAGCCTCTGGATCATGGTGAATTACCCCAGGTGAATGCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1138355 172 - 8785636 ctactgcagagaatgtactggtcatatcaatgtgaatattcagatccatatgtcagttatggttttcaGACTGGCCCAGCATCT---C---GTGTGGCATGCTGAAGGAATCAGGCTCTGTCTTAGCAGAGTCAAAAACAAGCCTCTGGATCATGGTGAATTACCCCAGGTGAATGCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1606950 172 + 27333823 ctactgcagagaatgtactggtcatatcaatgtgaatattcagatccatatgtcagttatggttttcaGACTGGCCCAGCATCT---C---ATGTGGCATGCTGAAGGAATCAGGCTCTGTCTTAGCAGAGTCAAAAACAAGCCTCTGGATCATGGTGAATTACCCCAGGTGAATGCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1877046 172 - 91010382 ctactgcagagaatgtactggtcatatcaatgtgaatattcagatccatatgtcagttatggttttcaGACTGGCCCAGCATCT---C---GTGTGGCATGCTGAAGGAATCAGGCTCTGTCTTAGCAGAGTCAAAAACAAGCCTCTGGATCATGGTGAATTACCCCAGGTGAATGCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1988132 172 + 5179401 ctactgcagagaatgtactggtcatatcaatgtgaatattcagatccatatgtcagttatggttttcaGACTGGTCCAGCATCT---C---GTGTGGCATGCTGAAGGAATCAGGCTCTGTCTTAGCAGAGTCAGAAACAAGCCTCTGGATCATGGTGAATTACCCCAGGTGAATGCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7693862 172 - 21726897 ctactgcagagaatgtactggtcatatcaatgtgaatattcagatccatatgtcagttatggttttcaGACTGGCCCAGCATCT---C---GTGTGGCATGCTGAAGGAATCAGGCTCTGTCTTAGCAGAGTCAAAAACAAGCCTCTGGGTCATGGTGAATCACCCCAGGTGAATGCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112514428 171 + 204313951 ctactgcagagaatgtactggtcatatcagtatgaatattcagatctataagtcagttacggttttcaGATTGGCTCAGCATCT---C---ATATGGCATGCTGAAAGAATCAGACTCTGTCTTAGCAGAATCAAGAACAAGGCTCTGGACCATGGT-AATTACCAGAGATAAATGCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44960251 171 + 71252344 ctactgcagagaatgtactggtcatatcaatgtgaatattcagatctataagtcagttatggttttcaGATTGGCTCAGCATCT---C---ATATGGCATGCTGAAGGAATCAGACTCTGTCTTAGCAGAATCAAGAACAAGGCTCTGGACCATGGT-AATTACCCGAGATAAATGCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 324782 171 - 1393929 ctactgcagagaatgtactggtcatatcaatatgaatattcagatctgtaagtcagttatggttttcCGATTGGCTCAGCATCT---C---ATATGGCATGCTGAAGGAATCAGACTCTGTCTTAGCAGAATCAAGAACAAGGCTCGGGACCATGGT-AATTACCCAAGATAAATGCT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1401105 170 - 15889662 ctactgcagagaatgtactggtcatatcggtgtgaatattcagatctataagtcagttatggttttcaGATTGGCTCAGCATCT---C---GTATGGCATGCTGAAGGAATCAGACTCTGTCTTAGCAGAATCAAGAACGAGGCTCTGGACCATGGT-AATTATCTGAGAT-AATGCT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 559355 175 - 10520994 ctgttgcagaggatgtactggacataccagtgtgagtattcagatccgcatgtcagttatGGGTTTCGGATCGGCTCCGCACCTACAT---GTGTggtgtgctgcgggaatcaggccatgccccagcagagtcaagaacaaggctctggaccgtggtgaattccccaaggtaaatgct i proCoq1.NW_012147189v1 C 0 I 240 s mm10.chr13 76436037 170 + 120421639 CTACCGCAGAAAGTACACTCACAATACCAATGTGAGCATTTGGATCTACATATCAACCATGGTTTTCAGATTAGTGCAGCATCA---CCAAGTAAGGTTTAGTTAAGT--TAAGGCTCTGAC-TAGC--ACCTGAGAACAAGGTTCTGGGAGAATGTGAATTTCTAAAGTCAACTTCT i mm10.chr13 C 0 I 2 s canFam3.chr3 14299326 156 + 91889043 CTGTTGCAGAGAATGTACTGG------------------TCAGATCCCTGTGTCAGGTATGCTTTCCC-ATCAGTTCAGCAGCCACAT---GTGTggtgtgtggagacaatcaggttctgggccagcagaggtgagaacaaggctctgggccatgggaggttcaccaaggtTTACAGC i canFam3.chr3 I 201 I 1 s dasNov3.JH570378 1216861 162 - 11655695 cttttacagaacatgtactagttttataaatgtgagtattcagatcc----------CATGG--TACATCTGCACTCAGCATCTGCGA---GTGTggtgtgctgaaat-acgaggttctgacctggcagagtggagaataaggctctggaccatagtgaattcatcagggcaaatgcc i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84817094 248 + 108143057 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=2023898.000000 s hg38.chr5_GL383530v1_alt 16641 192 + 101241 -atttcttaggctacttgc------------agcttgccaat---------------tgcc------------------------ca-------------ttccAATCTCTACAAGTCCCACTAGATGTTTCACAGAAT---------AAAGC-------------------AAAAAAAGAGGCTGGGATCACGA-AAATG--AATTTTCGAAGAGAAATATCAAGAATTATAATTA-TACATTTTCTCATCATGTTTTATTAATGAATCAAA---GGAGTTAGTG-------AGCATT s panTro5.chr5 20245464 192 + 181907262 -ATTTCTTAGGCTACTTGC------------AGCTTGCCAAT---------------TGCC------------------------CA-------------TTCCAATCTCTACAAGTCCCACTAGATGTTTCACAGAAT---------AAAGC-------------------AAAAAAAGAGGCTGGGATCACAA-AAATG--AATTTTCAAAGGGAAATACCAAGAATTATAATTA-TACATTTTCTCATCATGTTTTATTAATGAATCAAA---GGAGTTAGTG-------AGCATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20262769 192 + 183735486 -ATTTCTTAGGCTACTTGC------------AGCTTGCCAAT---------------TGCC------------------------CA-------------TTCCAATCTCTACAAGTCCCACTAGATGTTTCACAGAAT---------AAAGC-------------------AAAAAAAGAGGCTGGGATCACAA-AAATG--AATTTTCAAAGGGAAATACCAAGAATTATAATTA-TACATTTTCTCATCATGTTTTACTAATGAATCAAA---GGAGTTAGTG-------AGCATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4748607 192 - 13748885 -ATTTCTTAGGCTACTTGC------------AGCTTGCCAAT---------------TGCC------------------------CA-------------TTCCAATCTCTACAAGTCCCACTAGATGTTTCACAGAAT---------AAAGC-------------------AAAAGAAGAGGCTGGGATCACGA-AAATG--AATTTTCAAAGGGAAATACCAAGAATTATAATTA-TACATTTTCTCATCATGTTTCATTAATGAATCAAA---GGAGTTAGTG-------AGCATT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53783909 188 - 163208435 -ATTTCTTAGGCTACTTGC------------AGCTTGCCAAT---------------TGCC------------------------CA-------------TTCCAGTCTCTACAAGTCCAACTAGATGTTTCACAGAAT---------AAAGC-------------------AAAAAAAGAGGCTGGGATCACAA-AAATG--AATTTTCAAAGGGAAATACCAAGTATTATAATTA-TACATTTTCTCATAATATTTTATTAATGAATCAAA---GGAGTT-----------AGCGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87811252 207 - 180051392 -ATTTCTTAGGCTACTTGC------------AGCTTGCCAAT---------------TGCC------------------------CA-------------TTCCAATCTCTACAAGTCCCACTAGATGTTTCGCAGaat---------aaagc---aaaaaaaaaaaaaaaaaaaaaaaGAGGCTGGGATCAAGA-AAATG--AATTTCCAAAGGGAAATACCAAGTATTATAATTA-TACA-TTTCTCATCATATTTTATTAATGAATCAAA---GGAGTTAGTG-------AGCATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87915658 207 - 181584905 -ATTTCTTAGGCTACTTGA------------AGCTTGCCAAT---------------TGCC------------------------CA-------------TTCCAATCTCTACAAGTCCCACTAGATGTTTCACAGaat---------aaagc---aaaaaaaaaaaaaaaaaaaaaaaGAGGCTGGGATCAAGA-AAATG--AATTTCCAAAGGGAAATACCAAGTATTATAATTA-TACA-TTTCTCATCATATTTTATTAATGAATCAAA---GGAGTTAGTG-------AGCATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1138527 217 - 8785636 -ATTTCTTAGGCTACTTGC------------AGCTTGCCAAT---------------TGCC------------------------CA-------------TTCCAATCTCTACAAGTCCCACTAGATGTTTCGCAGAATaaaaaaaaaaaaaa---aaaaaaaaaaaaaaaaaaaaaaaGAGGCTGGGATCAAGA-AAATG--AATTTCCAAAGGGAAATACCAAGTATTATAATTA-TACATTTTCTCATCATATTTTATTAATGAATCAAA---GGAGTTAGTG-------AGCATT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1607122 205 + 27333823 -ATTTCTTAGGCTACTTGC------------AGCTTGCCAAT---------------TGCC------------------------CA-------------TTCCAATCTCTACAAGTCCCACTAGATGTTTCGCAGaat---------aaag------aaaaaaaaaaaaaaaaaaaaaGAGGCTGGGATCAAGA-AAATG--AATTTTCAAAGGGAAATACCAAGTATTATAATTA-TACATTTTCTCATCATATTTTATTAATGAATCAAA---GGAGTTAGTG-------AGCATT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1877218 210 - 91010382 -ATTTCTTAGGCTACTTGC------------AGCTTGCCAAT---------------TGCC------------------------CA-------------TTCCAATCTCTACAGGTCCCAATAGATGTTTCGCAGAAT---------AAAGC-aaaaaaaaaaaaaaaaaaaaaaaaaGAGACTGGGATCAATA-AAATG--AATTTTCAAAGGGAAATACCACGTATTATAATTA-TACATTTTCTCATCATATTTTATTAATGAATCAAA---GGAGTTAGTG-------AGCATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1988304 203 + 5179401 -ATTTCTTAGGCTACTTGC------------AGCTTGCCAGT---------------TGCC------------------------CA-------------TTCCAATCTCGACAAGTCCTACTAGATGTTTCGCAGaat---------aaagc--------aaaaaaaaaaaaaaaaaaGAGGCTGGGATCAAGA-AAATG--AATTTTCAAAGGGAAATACCAAGTATTATAATTA-TACATTTTCTCATCATATTTTATTAATGAATCAAA---GGAGTTAGTG-------AGCATT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7694034 211 - 21726897 -GTTTCTTAGGCTACTTGC------------AGCTTGCCAAT---------------TGCC------------------------CA-------------TTCCAATCTCTACAAGTCCCACTAGATGTTTCGCAGAAT---------AAAGCaaaaaaaaaaaaaaaaaaaaaaaaaaGAGGCTGGGATCACGA-AAATG--AATTTTCAAAGGGAAATACCAACTATTATAATTA-TACATTTTCTCATCATATTTTATTAATGAATCAAA---GGAGTTAGTG-------AGCATT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112514599 192 + 204313951 -GCTTCTTAGGCTACTTGC------------AGCTTGCCAAT---------------TGCC------------------------CA-------------TTCCAATCTCTACAAGTCCCACTAGATGTTTTGCAGAAT---------AAAGC-------------------AAGAAGAGAGGCTGGGATCAGGG-AAACT--AATTTTCAAAGGGAAATACCTAGTTTTATAATTA-TACATTATCTCATCATGTTTTATTAATGAATCAAA---GGAGTTACTG-------AGCGTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44960422 192 + 71252344 -GCTGCTTAGGCTACTTGC------------AGCTTGCCAAT---------------TACC------------------------CA-------------TTCCAGTCTCTGCAAGTCCCATGAGATGTTTTGCAGAAT---------AAAGC-------------------AAAAAGAGAGGCTGGGATCAGGG-AAACA--AATTTTCAAAGGGAAATAACTAGTATTATAATTA-TACATTTTCTCATCATATTTTATTAATGAATCAAA---GGAGTTACTG-------AGCGTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 324953 189 - 1393929 -GCTGCTCAGGCTACTTGC------------AGCTTGCCAAT---------------TACC------------------------CA-------------TTCCAGTCTCTACAAGTCCCACTAGATGTTTTGCAGAA----------AAAGC-------------------ACAAAGAGAGGCTGGGATC-GGG-AAACT--AATTTTCAAAGGGAAATACCTAGTATTATAATTA-TACATTTTC-CATCATATTTTATTAATGAATCAAA---GGAGTTACTG-------AGCGTG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1401275 192 - 15889662 -GCTTCTTAGGCTACTTGC------------AGCTTGCCAAT---------------TGCC------------------------CA-------------TTCCAATCTCTAGAAGTCCCACTAGATGTTTTGCAGAAT---------AAAGC-------------------AAAAAGAGAGGCTGGGATCAGGG-AAACT--AATTTTCAAATGGAAATACCTAGTATTATAATTA-TACATTTTCTCATCATATTTTATTAATGAATCAAG---GGAGTTACTG-------AGCGTG i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76436209 218 + 120421639 -ATTTGTAGGCTTGTTTGCTGTCTTTCAGTGAGCCTGTCAAGGGAA---------GATGTC------------------------CACTGTAAACCTTCTTCCCAACTTCTGCATGACCCAACAG----TCCCTAAAGT---------AAAAC---------------------AGGAGAAGCCTGGGACCAGCA-AACTA-TACTTTTCAAAAGGTGATATTGAATATTATAATTA-GTAATCTTTTCATAATACTTTAGTAATGAATCAAA---GGAGCTAATG-------GACATT i mm10.chr13 I 2 I 18 s canFam3.chr3 14299483 210 + 91889043 -CTTTCTTAGGC----TGC------------AGCTCTCCCATGGGCTGTCACGGTGATGCC--------TCTCACAGTCCACTTTCC-------------TTCCAGTTTCTACA--TCTCACTAAATATTTCACAGAGT---------AAATC-------------------AGAAGGAAAGGCCGAGACCAGAAGAAACT--AGTTTTAAAAAGGAAATACTAAGCATTGTAATTA-TAAAAATTC-------------TTAAAGAG--GGA---GCATTTACTATGAGCTTAACATT i canFam3.chr3 I 1 I 3 s dasNov3.JH570378 1217023 219 - 11655695 actttcttaggcattctgcc-----------agcggggctgt---------------tgctgtgatgactctcacagcccaccctct-------------ttccCATATCTGCGAATCTCATCAAGCATTTTACAGAGA---------AAATC-------------------AGAAAGAGATACTTGGACTATTA-AAACTGTACTTTTTAAGAGGAAATACCAAGCATTGTAATTATTAAAATTTCTCAT-----TCTATTCATGAGTCAAATATGGAGTCACTG-------ATCATT i dasNov3.JH570378 C 0 I 21 e micMur3.chr12 84817094 248 + 108143057 I e proCoq1.NW_012147189v1 559530 240 - 10520994 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=1079721.000000 s hg38.chr5_GL383530v1_alt 16833 84 + 101241 TATTTT--CCTCTCTTGTGTTCCACTGCAA-TTTGCCAGGGAAATAACATGGACTCTTTCTCTCCCTTTCAACTCTGGTTTT-------------------------CTTGC s panTro5.chr5 20245656 84 + 181907262 TATTTT--CCTCTCTTGTGTTCCACTGCAA-TTTGCCAGGAAAATAACATGGACTCTTTCTCTCCCTTTCAACTCTGGTTTT-------------------------CTTGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20262961 84 + 183735486 TATTTT--CCTCTCTTGTGTTCCACTGCAA-TTTGCCAGGAAAATAACATGGACTCTTTCTCTCCCTTTCAACTCTGGTTTT-------------------------CTTGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4748799 84 - 13748885 TATTTT--CCTCTCTTGTGTTCCACTGCAA-TTTGCCAGGAAAATAACATGGACTCTTTCTCTCCCTTTCAACTCTGGTTTT-------------------------CTTGC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53784097 84 - 163208435 TATTTT--CCTCTCTGGTGTTCCACTGCAA-TTTGCCAGGAAAATAAAGTGGACGCTTTGTCTCCTTTTCAACTCTGGTTTG-------------------------CTTGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87811459 84 - 180051392 TATTTT--CCTCTCTTGTGTTCCACTGCAA-TTTACCAGGAAAATAAAACGGACTCTTTCTCTCCCTTTCAACTCTGGTTTT-------------------------CTTGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87915865 84 - 181584905 TATTTT--CCTCTCTTGTGTTCCACTGCAA-TTTACCAGGAAAATAAAACGGACTCTTTCTCTCCCTTTCAACTCTGGTTTT-------------------------CTTGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1138744 84 - 8785636 TATTTT--CCTCTCTTGTGTTCCACTGCAA-TTTACCAGGAAAATAAAACGGACTCTTTCTCTCCCTTTCAACTCTGGTTTT-------------------------CTTGC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1607327 84 + 27333823 TATTTT--CCTCTCTTGTGTTCCACTGCAA-TTTACCAGGAAAATAAAATGGACTCTTTCTCTCCCTTTCAACTCTGGTTTT-------------------------CTTGC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1877428 84 - 91010382 TATTTT--CCTCTCTTGTGTTCCACTGCAG-TTTGCCAGGAAAATAAAACGGACTCTTTCTCTCCCTTTCAACTCTGGTTTT-------------------------CTTGC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1988507 84 + 5179401 TATTTT--CCTCTCTTGTGTTCCACTGCAA-TTTACCAGGAAAATAAAACGGACTCTTTCTCTCCCTTTCAACTCTGGTTTT-------------------------CTTGC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7694245 84 - 21726897 TATTTT--CCTCTCTTGTGTTCCACTGCAA-TTTGCCAGGAAAATAAAACGGACTCTTTCTCTCCCTTTCAACTCTGGTTTT-------------------------CTTGC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112514791 84 + 204313951 TATTTT--TCTCTCTTGTGTTCCACTGCAA-TTTGCTGGGAAAATAAAGTGGACTCTTTCTCTTACTTTCAAACCTGGTTTT-------------------------CTTGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44960614 84 + 71252344 TATTTT--TCTCTCTTGTGTTCCACTGCAA-TTTGCTGGGAAAATAAAGTGAACTCGTTCTCTCCCTTTCAAACCTGGTTTT-------------------------CTTGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 325142 84 - 1393929 TATTTT--TCTCTCTTGTGTTCCACTGCAA-TTTGCCCAGAAAATAGAGTGGACTCTTTCTCTCCCTTTCAAACCTGGTTTT-------------------------CTTGC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1401467 84 - 15889662 TATTTT--TCTCTCTTGTGTTCCACTGCAA-TTTGCCTGGAAAATAAAGTGGACTCTTTCTCTCCCTTTCAAACCTGGTTTT-------------------------CTTGC i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 559770 84 - 10520994 TATTTT--CCTCTCTTGTGCTCCACTGCGA-TTTACCAAGGAAATAAAGTGGAATATTTTTATCCCTTTGAAGCCTGGTTTT-------------------------CTTGC i proCoq1.NW_012147189v1 I 240 C 0 s mm10.chr13 76436445 83 + 120421639 TACTTTTGTCCCTATGGAATTCTACTTCAA-TTTGCCAA-CAAATAAAACAAAACACTTCTC-CCTCTTCAGACATGGTTTT--------------------------TTGC i mm10.chr13 I 18 C 0 s canFam3.chr3 14299696 108 + 91889043 TGTTTT--TCAACCTTGTATTCCACTGAGGTTTTGCCAAGAAAATAAAGTGGAATA--TCTCCTCCTTGGAAGCCTGCttttttttttttttttttttttcttttCCCTCCC i canFam3.chr3 I 3 C 0 s dasNov3.JH570378 1217263 83 - 11655695 TATTTT--CCTCCTCCTTTTTTCCCTGCAA-TTTGCCAG-AAAATAATGTGTAATATTTCCCTCCCTTTGAAGCTTGGTTTT-------------------------CAtgc i dasNov3.JH570378 I 21 I 4191 e micMur3.chr12 84817094 248 + 108143057 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=459866.000000 s hg38.chr5_GL383530v1_alt 16917 36 + 101241 TGTGAAAGAGCAGCCATAACTTCTAGCAAAGGTTCC- s panTro5.chr5 20245740 36 + 181907262 TGTGAAAGAGCAGCCATAACTTCTAGCAAAGGTTCC- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20263045 36 + 183735486 TGTGAAAGAGCAGCCATAACTTCTAGCAAAGGTTCC- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4748883 36 - 13748885 TGTGAAAGAGCAGCCATAACTTTTAGCAAAGGTTCC- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53784181 36 - 163208435 TGTGAAAGAGCAGCCGTAACTTCTAGCAAAGGTTCC- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87811543 36 - 180051392 TGTGAAAGAGCAGCCATAACTTCTAGCAAAGGCTCC- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87915949 36 - 181584905 TGTGAAAGAGCAGCCATAACTTCTAGCAAAGGCTCC- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1138828 36 - 8785636 TGTGAAAGAGCAGCCATAACTTCTAGCAAAGGCTCC- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1607411 36 + 27333823 TGTGAAACAGCAGCCATAACTTCTAGCAAAGGCTCC- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1877512 36 - 91010382 TGTGAAAGAGCAGCCATAACTTCTAGCAAAGGCTCC- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1988591 36 + 5179401 TGTGAAAGAGCAGCCATAACTTCTAGCAAAGGCTCC- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7694329 36 - 21726897 TGTGAAAGAGCAGCCATAACTTCTAGCAAAGGCTCC- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112514875 36 + 204313951 TGTTAAACAGCAGCCGTAACTTCCAGCAAAGGCTCC- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44960698 36 + 71252344 TGTGAAACAGCAGCTGTAACTTCTAGCAAAGGCTCC- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 325226 36 - 1393929 TGTGAAACAGCAGCCGTAACTTCTAGCACAGGCTCC- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1401551 36 - 15889662 CGTTAAACAGCAGCCATAACTTCTAGCAAAGGCTCC- i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 559854 36 - 10520994 TGTGAAACAGCAGCCACAACTTCTAGCAAAGGCTCC- i proCoq1.NW_012147189v1 C 0 I 213 s mm10.chr13 76436528 35 + 120421639 TGTTGGAAAACA-CCACAAACTTCAGCAAATGCTTT- i mm10.chr13 C 0 C 0 s canFam3.chr3 14299804 37 + 91889043 TGTGAAACAGCAGCCACAACTTGTAGTAGAAGCTGAA i canFam3.chr3 C 0 C 0 e micMur3.chr12 84817094 248 + 108143057 I e dasNov3.JH570378 1217346 4191 - 11655695 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=2482863.000000 s hg38.chr5_GL383530v1_alt 16953 259 + 101241 TGAGGGAGGCAGCAAGTAGCCACCCAGGAGCTTTAGGATGGGGCTTCCTATCTCAGTCGTGCCTAGAGGAACTGAAGCAGTT-CTTAATGTACTGGTTTGAGGTCCGTCTTACCAGAGTTCCAACCCACCGCATGTCCCTAGTGGTCTATTACTTACTccgttatttttaatggcaaaaaccgttacttttaatggttacttttgcaccaacctaaTATTTCACAGCCACTCTCCTGGATGTTTCTGGGGAGCTTCAGTC s panTro5.chr5 20245776 249 + 181907262 TGAGGGAGGCAGCAAGTAGCCACCCAGGAGCTTTAGGATGGGGCTTCCTATCTCAGTCGTGCCTAGAGGAACTGAAGCAGTT-CTTAATGTACTGGTTTGAGGTCCGTCTTACCAGAGTTCCAACCCACCGCATGTCCCTAGTGGTCTATTACTTACTGcgttacttttaatggcaaaaacc----------acagttacttttgcaccaacctaaTATTTCACAGCCACTCTCCTGGATGTTTCTGGGGAACTTCAGTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20263081 249 + 183735486 TGAGGGAGGCAGCAAGTAGCCACCCAGGAGCTTTAGGATGGGGCTTCCTATCTCAGTCGTGCCTAGAGGAACTGAAGCAGTT-CTTAATGTACTGGTTTGAGGTCCGTCTTACCAGAGTTCCAACCCACCGCATGTCCCTAGTGGTCTATTACTTACTccgttacttttaatggcaaaaacc----------acagttacttttgcaccaacctaaTATTTCACAGCCACTCTCCTGGATGTTTCTGGGGAACTTCAGTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4748919 249 - 13748885 TGAGGGAGGCAGCAAGTAGCCACCCAGGAGCTTTAGGATGGGGCTTCCTATCTCAGTCGTGCCTAGAGGAACTGAAGCAGTT-CTTAATGTACTGGTTTGAGGTCCGTCTTACCAGAGTTCCAACCCACCGCATGTCCCTAGTGGTCTATTACTTACTccgttacttttaatggcaaaaacc----------gcagttacttttgcaccaacctaaTATTTCACAGCCACTCTCCTGGATGTTTCTGGGGAACTTCAGTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53784217 225 - 163208435 TGAGGGAGGCAGCAAGTAGCCACCCAGGAGCTTTATGATGGGGCTTCCTATCTCAGTCATGCCTAGAGGAACCGAAGCAGTT-CTTAATGCACTCT-----GGTCCATCTTATCAGAGTTCCAACCCACCCCATGTCCCTAGTGGTCTATTACTTACTccatcacttttaatggcaaaaacc----------acagttacttttgcaccaac-------------------ctCCTGGATGTTTCTGGGGAACTTCAGTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87811579 249 - 180051392 TGAGGGAAGCAGTGAGTAGCCACCTAGGAACTTTACGATGGGGCTTCCTATCTCAGTTGTGCCTAGAGGAACTGAAGCAGTT-CTTAATGCACTGGTTTGAGGTCCGTCTTACCAGAGTTCCAACCCACCCCATGTCCCTAGTGGTCTATTACTTACTccattacttttaatggcaaaaact----------acagttacttttgcaccaacctGATATTTCACAGCCACTCTCCTGGATGTTTCTGGGGAACTTCAGTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87915985 249 - 181584905 TGAGGGAGGCAGTGAGTAGCCACCTAGGAACTTTACGATGGGGCTTCCTATCTCAGTTGTGCCTAGAGGAACTGAAGCAGTT-CTTAATGCACTGGTTTGAGGTCCGTCTTACCAGAGTTCCAACCCACCCCATGTCCCTAGTGGTCTATTACTTACTccattacttttaatggcaaaaacc----------acagttacttttgcaccaacctGATATTTCACAGCCACTCTCCTGGATGTTTCTGGGGAACTTCAGTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1138864 249 - 8785636 TGAGGGAGGCAGTGAGTAGCCACCTAGGAACTTTACGATGGGGCTTCCTATCTCAGTTGTGCCTAGAGGAACTGAAGCAGTT-CTTAATGCACTGGTTTGAGGTCCGTCTTACCAGAGTTCCAACCCACCCCATGTCCCTAGTGGTCTATTACTTACTccattacttttaatggcaaaaacc----------acagttacttttgcaccaacctGATATTTCACAGCCACTCTCCTGGATGTTTCTGGGGAACTTCAGTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1607447 249 + 27333823 TGAGGGAGGCAGTGAGTAGCCACCTAGGAACTTTACGATGGGGCTTCCTATCTCAGTTGTGCCTAGAAGAACTGAAGCAGTT-CTTAATGCACTGGTTTGAGGGCCGTCTTACCAGAGTTCCAACCCACCCCATGTCCCTAGTGGTCTATTACTTACTccattacttttaatggcaaaaacc----------gcagttacttttgcaccaacctGATATTTCACAGCCACTCTCCCGGATGTTTCTGGGGAACTTCAGTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1877548 248 - 91010382 TGAGGGAGGCAGCGAGTAGCCACCTAGGAACTTTACGATGCGGCTTCCTATCTCAGTTGTGCCTAGAGGAACTGAAGCAGTT-CTTAATGTACTGGTTTGAGGTCTGTCTTACCAGAGTTCCAACCCACCCCATGTCCCTAGTGGTCTGTTACTTACTccattacttttaatggc-aaaacc----------gcagttacttttgcaccaacctGATATTTCACAGCCACTCTCCCGGATGTTTCTGGGGAACTTCAGTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1988627 248 + 5179401 TGAGGGAGGCAGTGAGTAGCCACCTAGGAACTTTACGATGGGGCTTCCTATCTCAGTTGTGCCTAGAGGAACTGAAGCAGTT-CTTAATGCACTGGTTTGAGGTCCATCTTACCAGAGTTCCAACCCACCCCATGTCCCTAGTGGTCTATTACTTACTccattacttttaatggcaaaaacc----------gcagttacttttgcaccaa-cTGATATTTCACAGCCACTCTCCCGGATGTTTCTGGGGAACTTCAGTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7694365 249 - 21726897 TGAGGGAGGCAGCGAGTAGCCACCTAGGAACTTTACGATGGGGCTTCCTATCTCAGTTGTGCCTAGAGGAACTGAAGCAGTT-CTTAATGCACTGGTTTGAGGTCTGTCTTACCAGAGTTCCAACCCACCCCATGTCCCTAGTGGTCTATTACTTACTccattacttttaatggcaaaaacc----------acagttacttttgcaccaacctGATATTTCACAGCCACTCTGCTGGATGTTTCTGGGGAACTTCAGTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112514911 249 + 204313951 TAAGGGAGCCAGCGAGTAGCCACCCAGAAGCTTTACAATGGGACTTCCTGTCTCAGTCATGCTTGGAGGAACTGAAGCAGTT-CTTTATGTACAGGATTGAGGTCCATCCTACCACAATTCCAACCCACACCATGTCGCTAATGTTCTATTACTTACTccgttacttttaatggcaaaaacc----------acagttacttttgcaccaacctaaTATTTTGCAGCCGGTCTCACATATGTTTCTGGGAAACGTCAGTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44960734 249 + 71252344 TGAGGGAGCCAGTAAGTAGCCACCCAGGAGCTTTACAATGGGGCTTCCTGTCTCAGTCATGCCTGGAGGAACTGAAGCAGTT-CTTTATGTACAGGATTGAGGTCCATCCTACCATAGTTCCAACTCACCTCATGTCCCTAATGGTCTATTACTTACTccattacttttaatggcaaaaacc----------acagttacttttgcaccaacctaaTATTTTACAGCTAGTCTCTCGTATGTTTCTGGAAAACGTCAGTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 325262 245 - 1393929 TGAGGCAGCCAGCAAGTAGCCACCCAGAAGCTTTACAATGGGGCTTCCTGTATCAGTAATGCCTGGAGGAACTGAAGCAGTT-CATTATGTACAGGATTGAGGTCCATCCTACCACAGTTCCAACTCACCCCATGTCCCTAATGGTGTA----TTACTccattatttttaatggcaaaaacc----------acagttacttttgtaccaacctaaTATTTTACAGCCAGTCTTGCATACGTTTCTGGGAAACGTCAGTC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1401587 249 - 15889662 TGAGGGAGCCAGCAAGTAGCCACCCAGAAGCTTTACAATGGGGCTTCCTGTCTCAGTCATGCCTGGAGGAACTGAAGCAGTT-CTTTAGGTACAGGATTGAGGTCCGTCCTACCACAGTTCCAACTCACTCCATGTCTCTAATGGTCTATTACTTACTccattacttttaatggcaaaaacc----------acagttacttttgcaccaacctaaTATTTTGCAGCCAGTCTCACATATGTTTCTGGGAAACGTCAGTC i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76436563 193 + 120421639 CCAAGGAAGCAGAGACCAGCCAGAAGGGAGCCCAGCAGTGGGGCTTCCTACCTTAGTCATGCCCAGAGGAGCAGGAACAATT-CCTTATG-GCCACACCAAGGT-TATCTGAGCATAGTTATTATCTTCTGGGTAAGCTCCAGGGTAGTTGAATCCATCCCATATCCCTAATGGC------C----------------------------------TATTATGCAGCTACTC----------------------TCAG-- i mm10.chr13 C 0 C 0 s canFam3.chr3 14299841 208 + 91889043 TTATGTAGGCAGAGAACAGCCAACAAGGGACTTAGCTATCAGGCCTCCTACCTTGGTCATGCCTAGAGGAGCTGAAACAGTTCCTTTACTCACAGATTTTGGGTCCATCCTACCAGAGGTCTTCTCTTCTGGGTG------GTGCTCCA--ACTCACT---GTATCCCTAATGGC------C----------------------------------TATTATGAAGCCACCTCAGGAGGTGTTTCTGGG-AACTTCAGTG i canFam3.chr3 C 0 C 0 e micMur3.chr12 84817094 248 + 108143057 I e proCoq1.NW_012147189v1 559890 213 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=1991542.000000 s hg38.chr5_GL383530v1_alt 17212 171 + 101241 TAGGCTCAGACATGGTGCCTGCTGGTTCTGGGAAAAGGTTAAGGGGCTGAGTAGTAGCACACACTACATCCTCCAGACTGTCTATGCCATGGCTATGTTTGGAAACCCTGCAAATGGCCTGGCAGAGTCTCACCTTGCCAATCCAGAGAGGATGTGGGGGATTTCTGGCTT s panTro5.chr5 20246025 171 + 181907262 TAGGCTCAGACATGGTGCCTGCTGGTTCTGGGAAAAGGTTAAGGGGCTGAGTAGTAGCAGACACTACATCCTCCAGACTGTCTATGCCGTGGCTATGTTTGGAAACCCTGCAAATGGCCTGGCAGAGTCTCACCTTGCCAATCCAGAGAGGATGTGGGGGATTTCTGGCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20263330 171 + 183735486 TAGGCTCAGACATGGTGCCTGCTGGTTCTGGGAAAAGGTTAAGGGGCTGAGTAGTAGCAGACACTACATCCTCCAGACTGTCTATGCCGTGGCTATGTTTGGAAACCCTGCAAATGGCCTGGCAGAGTCTCACCTTGCCAATCCAGAGAGGATGTGGGGGATTTCTGGCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4749168 171 - 13748885 TAGGCTCAGACATGGTGCCTGCTGGTTCTGGGAAAAGGTTAAGGGGCTGAGTAGTAGCAGACACTACATCCTCCAGACTGTCTGTGCCATGGCTATGTTTGGAAACCCTGCAAATGGCCTGGCAGAGTCTCACCTTGCCAATCCAGAGAGGATGTGGGGGATTTCTGGCTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53784442 171 - 163208435 TAGGCTCAGATGTGGTGCCTGCTAGTTCTGGGAAAAGGTTAAGGGGCTGAGTGGTGGCAGACACTACTTTCTCCAGACTGTCTATGCCATGGCTATCTTTGGAAACCCTGTAAATGGCCTGGCAGAGTCTCACCTTGCCAATCCATAGAGGATTTGGGGGATTTCTGGGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87811828 171 - 180051392 TAGGCTCAGATGTGGTGCCTGCTGGTTCTGGGAAAAGGTTAAGGGGCTGAGTGGTGGCAGACACTACTTCCTCCAGACTGTCTATGCCATGGCTATCTTTGGAAATCCTATAAATGGCCTGGCAGAGTCTCACCTTGCCCATCCTTAGAAGATTTTTGGGATTTCTGGCTT i rheMac8.chr6 C 0 I 335 s macFas5.chr6 87916234 171 - 181584905 TAGGCTCAGATGTGGTGCCTGCTGGTTCTGGGAAAAGGTTAAGGGGCTGAGTGGTGGCAGACACTACTTCCTCCAGACTGTCTATGCCATGGCTATCTTTGGAAATCCTATAAATGGCCTGGCAGAGTCTCACCTTGCCCATCCTTAGAAGATTTTTGGGATTTCTGGCTT i macFas5.chr6 C 0 I 337 s macNem1.NW_012011400v1 1139113 171 - 8785636 TAGGCTCAGATGTGGTGCCTGCTGGTTCTGGGAAAAGGTTAAGGGGCTGAGTGGCGGCAGACACTACTTCCTCCAGACTGTCTATGCCATGGCTATCTTTGGAAATCCTATAAATGGCCTGGCAGAGTCTCACCTTGCCCATCCTTAGAAGATTTTTGGGATTTCTGGCTT i macNem1.NW_012011400v1 C 0 I 328 s cerAty1.NW_012002401v1 1607696 171 + 27333823 TAGGCTCAGACGTGGTGCCTGCTGGTTCTGGGAAAAGGTTAAGGGGCTGAGTGGTGGCAGACACTACTTCCTCCAGACTGTCTATGCCATGGCTATCTTTGGAAATCCTATAAATGGCCTGGCAGAGTCTCACCTTGCCCATCCTTAGAAGATTTTTGGGATTTCTGGCTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1877796 171 - 91010382 TAGGCTCAGACGTGGTGCCTGCTGGTTCTGGGAAAAGGTTAAGGGGCTGAGTGGTGGCAGACACTACTTCCTCCAGACTGTCTATGCCATGGCTATCTTTGGAAATCCTATAAATGGCCTGGCAGAGTCTCACTTTGCCCATCCTTAGAAGATTTTTGGGATTTCTGGCTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1988875 171 + 5179401 TAGGCTCAGACGTGGTGCCTGCTGGTTCTGGGAAAAGGTTAAGGGGCTGAGTGGTGGTAGACACTACTTCCTCCAGACTGTCTATGCCATGGCTATCTTTGGAAATCCTATAAATGGCCTGGCAGAGTCTCACCTTGCCCATCCTTAGAAGATTTTTGGGATTTCTGGCTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7694614 171 - 21726897 TAGGCTCAGACATGGTGCCTGCTGGTTCTGGGAAAAGGTTAAGGGGCTGAGTGGTGGCAGACACTACTTCCTCCAGACTGTCTATGCAATGGCTATCTTTGGAAACCCTATAAATGGCCTGGCAGAGTCTCACCTTGCCAATCCTTAGAAGATTTTGGGAATTTCTGACTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112515160 171 + 204313951 TTGGCTCAGACATGGTGCCTGCTGGTTCTGGTAAAAGGTTAAGGGGCTGAGTGGTGGCAGACACTACTTCCTCCAGACTGTCTGTGCCATGGCTATCTTTGGAAACCCTATAAATGGCTAGGCCATTTATAGGGTTGCCAATCCTTAGAAGATTTTGGGGATTTTTGGCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44960983 171 + 71252344 TTGGCTCAGACATGGTGCCTGCTGGTTCTGGTAAAAGGTTAAGGGGCTGAGTGGTGGCAGACACTACTTCCTCCAGACTGTCTATTTCATGGCTATCTTTGGAAACCCTATAAATGGCCTGGCCATTTATAGGATTGCCAATCCTTAGAAGATTTGGGGGATTTTTGGCTT i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107830v1 325507 171 - 1393929 TTGGCTCAGACATGGTGCCTGCTGGTTCTGGTAAAAGGTTAAGGGGCTGAGTGGTGGCAGACACTACTTCCTCCAGACTGTCTATGTCATGGTTATCTTTGGAAACCCTATAAATGGCCTGGCCATTTATAGGGTTGCCAATCCTTAGAAGATTTGGGGGATTTTTGGCTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1401836 171 - 15889662 TTGGCTCAGACATGGTGCCTGCTGGTTCTGGTAAAAGGTTAAGGGGCTGAGTGGTGGCAGACACTACTTCCTCCAGACTGTCTATGCCATGGCTATCTTTGGAAACCCTATAAATGGCCTGGCCATTTATAGGGTTGCCAATCCTTAGAAGATTTTTGGGATTTTTGGCTT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 560103 170 - 10520994 TAGGCTCAGCCATGGTGCCTGCTGGTTCTGGTAAAATGTTAAGAGGCTGAGAGGTGACAGACACCACTTACTCCAG-CTGTCCATGCTGTGGATATCTCTGGAATCCCCATGATTGGCCTGGCAGAGTGCCACCTTGCCAGTCCTTAGAGGATCTTTGGGATTTCTGGCTC i proCoq1.NW_012147189v1 I 213 C 0 s mm10.chr13 76436756 129 + 120421639 ------CAGATAT------------------------GTTCAGGGATTGAGAAATGGCATGAAGT-CTTCCTCCAGACTGTCTGTGCCATGAGTATGTCTAGACTTCCTATTTTTGGTCTGATATAATGGTGCTTTGTCAG-----------TTTGGGGGGATCATAGCTC i mm10.chr13 C 0 I 1 s canFam3.chr3 14300049 149 + 91889043 TGGGCTCAGCAGTGGTGCCCACTGGTTCTGGGGAGAGTTTAAGGGGCAGAGAGGTGGCAGCCAGCATTTCCTCTAGACTGCCTGTGT-ATGGGTACCTT-----------------GCTTGACAGAGTGCCACCTTGCCAATCCTTCGAGGATCTTTGGGATTTCTG---- i canFam3.chr3 C 0 C 0 e micMur3.chr12 84817094 248 + 108143057 I e dasNov3.JH570378 1217346 4191 - 11655695 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=484104.000000 s hg38.chr5_GL383530v1_alt 17383 40 + 101241 AAGAATAGGCTGAAAAGAGGGA----CTGGAGGTTACTGCCACA s panTro5.chr5 20246196 40 + 181907262 AAGAATAGGCTGAAAAGAGGGA----CTGGAGGTTACTGCCACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20263501 40 + 183735486 AAGAATAGGCTGAAAAGAGGGA----CTGGAGGTTACTGCCACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4749339 40 - 13748885 AAGAATAGGCTGAAAAGAGGGA----CTGGAGGTTACTGCCACA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53784613 40 - 163208435 AAGAATAGGCTAAAAAGAGGGA----CTGGAGGTTACTGTCACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87812334 40 - 180051392 aagaaTAGGCTGAAAAGTGGGA----CTGGAGGTTACCGCCACA i rheMac8.chr6 I 335 C 0 s macFas5.chr6 87916742 40 - 181584905 AAGAATAGGCTGAAAAGTGGGA----CTGGAGGTTACCGCCACA i macFas5.chr6 I 337 C 0 s macNem1.NW_012011400v1 1139612 40 - 8785636 aaGAATAGGCTGAAAAGTGGGA----CTGGAGGTTACCGCCACA i macNem1.NW_012011400v1 I 328 C 0 s cerAty1.NW_012002401v1 1607867 40 + 27333823 AAGAATAGGCTGAAAAGTGGGA----CTGGAGGTTACCGCCACA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1877967 40 - 91010382 AAGAATAGGCTGAAAAGCGGGA----CTGGAGGTTACCACCACA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1989046 40 + 5179401 AAGAATAGGCTGAAAAGTGGGA----CTGGAGGTTACCGCCACA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7694785 40 - 21726897 AGGAATAGGCTGAAAAGTGGGA----CTGGAGGTTACTGCCACA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112515331 38 + 204313951 AAAAATAGGCTGAAAAGAGGGA----CTGGAGGTTATG--CACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44961155 40 + 71252344 AAAAATAGGTTGAAAAGAGGGA----CTGGAGGTTACTGCCACA i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107830v1 325678 40 - 1393929 AAAAATAGGCTGCAAAGAGGGA----CTGGAGGCTACTGCCACA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1402007 40 - 15889662 AAAAATAGGCTGAAAAGAGGGA----CTGGAGGTTACTGCCACA i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 560273 40 - 10520994 AAGAACAGGCTGAAAATAGAGA----CTGAAGGTAACTGCTACA i proCoq1.NW_012147189v1 C 0 C 0 s mm10.chr13 76436886 44 + 120421639 AGGAACGGGCTGCAATGAGTGAGGTGCCCAAGATGATTGCCACA i mm10.chr13 I 1 I 3204 s canFam3.chr3 14300198 38 + 91889043 --GAACATGCCAAGAAGAGGGA----CTATGGATAATTACTATA i canFam3.chr3 C 0 C 0 e micMur3.chr12 84817094 248 + 108143057 I e dasNov3.JH570378 1217346 4191 - 11655695 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=3722041.000000 s hg38.chr5_GL383530v1_alt 17423 312 + 101241 TAGCCAAGCATTCCTGGGAACTTTCTGGGAATGTGAACTGATATGAAAATGGCTTAGACTACAAGAATTATAGGGaaatatcagaata-cccacctaaaaatggcttaaataagaaggccattttaaagcttacttcatgaggaattttgaaataggcagttccagggtcagtttggctgctcaacagagtcttcaaggacggaggcactcttcataattctcttctgccatcatcaggat-tcagtgaaatctccctctatggtcacaggatgactccagcagttcTGATTATCCTGGGTTCCTGGATGTGTT s panTro5.chr5 20246236 309 + 181907262 TAGCCAAGCATTCCTGGGAACTTTCTGGGAATGTTAACTGATATGAAAATGGCTTAGACTACAAGAATTATAGGGaaatatcagaata-cccacctaaaaatggcttaaataag---gccattttaaagcttacttcatgaggaattttgaaataggcagttccagggtcagtttggctgctcaacagagtcttcaaggacggaggcactcttcataattctcttctgccatcatcaggat-tcagtgaaatctccttctatggtcacaggatgactccagcagttcTGATTATCCTGGGTTCCTGGATGTGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20263541 309 + 183735486 TAGCCAAGCATTCCTGGGAACTTTCTGGGAATGTTAACTGATATGAAAATGGCTTAGACTACAAGAATTATAGGGaaatatcagaata-cccacctaaaaatggcttaaataag---gccattttaaagcttacttcatgaggaattttgaaataggcagttccagggtcagtttggctgctcaacagagtcttcaaggacggaggcactcttcataattctcttctgccatcatcaggat-tcagtgaaatctccctctatggtcacaggatgactccagcagttcTGATTATCCTGGGTTCCTGGATGTGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4749379 312 - 13748885 TAGCCAAGCATTCCTGGGAACTTTCTGGGAATGTTAACTGATATGAAACTGGCTTAGACTACAAGAATTATAGGGaaatatcagaata-cccacctaaaaatggcttaaataagaaggccattttaaagcttacttcatgaggaattttgaaataggcagttccagggtcagtttggctgctcaacagagtcttcaaggacggaggcactcttcataattctcttctgccatcatcaggat-tcagtgaaatctccctctatggtcacaggatgactccagcagttcTGATTATCCTGGGTTCCTGGATGTGTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53784653 296 - 163208435 TACCCAAGCATTCCTGGGAACTTTCTGGGAATGTTAACTGATATGAAAATGGCTTAGATTACAAGAATTATAGGGaaatatcagaata-cccacct-aaaatggcttaaataagaaggccattttaaagcttacttcatgaggaattttgaaataggcagttccagggtcagtttggctgctcaacagagtcttcaaggacagaggcactcttcataattctcttctgccatcatcaggat----------------tctatggtcacaggatgactCCAGCAGTTCTGATTATCCTGGGTTCCTGGATGTCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87812374 311 - 180051392 TACCCGAGCATTCGTGG-AACTTTCTGGGAATGTTAACTGATATGAAAATGGCTTAGACTACAAGAATTATAGGGaaatatcagaata-cccacctaagaatggcttacataagaaggcaattttaaagcttgcttcatgaggaattttgaaataggcagttccagggtcagtttggctgctcgacagagtcttcaaggatccaggcactcttcataagtctcttctgccatcatcaggat-tcagtgaagtttccctgtatggtcacaggatgactccagcagttcTGATTATCCTGGGTTCCTGGATGTGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87916782 311 - 181584905 TACCCGAGCATTCCTGG-AACTTTCTGGGAATGTTAACTGATATGAAAATGGCTTAGACTACAAGAATTATAGGGaaatatcagaata-cccacctaagaatggcttacataagaaggcaattttaaagcttacttcatgaggaattttgaaataggcagttccagggtcagtttggctgctcgacagagtcttcaaggatccaggcactcttcataagtctcttctgccatcatcaggat-tcagtgaagtttccctgtatggtcacaggatgactccagcagttcTGATTATCCTGGGTTCCTGGATGTGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1139652 311 - 8785636 TACCCGAGCATTCCTGG-AACTTTCTGGGAATGTTAACTGATATGAAAATGGCTTAGACTACAAGAATTATAGGGaaatatcagaata-cccacctaagaatggcttacataagaaggcaattttaaagcttacttcatgaggaattttgaaataggcagttccagggtcagtttggctgctcgacagagtcttcaaggatccaggcactcttcataagtctcttctgccatcatcaggat-tcagtgaagtttccctgtatggtcacaggatgactccagcagttcTGATTATCCTGGGTTCCTGGATATGTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1607907 311 + 27333823 TACCCGAGCATTCCTGG-AACTTTCTGGGAATGTTAACTGATATGAAAATGGCTTAGACTACAAGAATTATAGGGaaatatcagaata-cccacctaagaatggcttacataagaaggccattttaaagcttacttcatgaggaattttgaaataggcagttccagggtcagtttggctgctcgacagagtcttcaaggatccaggcactcttcataagtctcttctgccatcatcaggat-tcagtgaagtttccctgtatggtcacaggatgactccagcagttcTGATTTTCCTGGGTTCCTGGATGTGTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1878007 311 - 91010382 TACCCGAGCATTCCTGG-AACTTTCTGGGAATGTTAACTGATATGAAAATGGCTTAGACTACAAGAATTATAGGGaaatatcagaata-cccacctaagaatggcttacataagaaggccattttaaagcttacttcatgaggaattttgaaataggcagttccagggtcagtttggctgcttgacagagtcttcaaggatccaggcactcttcataagtctcttctgccatcatcaggat-tcagtgaagtctccctgtatggtcacaggatgactccagcagttcTGATTATCCTGGGTTCCTGAATGTGTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1989086 311 + 5179401 TACCCGAGCATTCCTGG-AACTTTCTGGGAATGTTAACTGATATGAAAATGGCTTAGACTACAAGAATTATAGGGaaatatcagaatg-cccacctaagaatggcttacataagaaggccattttaaagcttacttcatgaggaattttgaaataggcagttccagggtcagtttggctgctcgacagtgtcttcaaggatccaggcactcttcataagtctcttctgccatcatcaggat-tcagtgaagtttccctgtatggtcacaggatgactccagcagttcTGATTATCCTGGGTTCCTGGATGTGTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7694825 311 - 21726897 TACCCGAGCATTCCTGGAAACTTTCTGGGAATGTTAACTGATATGAAAATGGCTTAGACTACAAGAATTATAGGGaaatatcagaata-cccacctaagaatggcttacataag-aggccattttaaagcttacttcatgaggaattttgaaataggcagttccagggtcagtttggctgctcgacagagtcttcaaggatccaggcactcttcataagtctcttctgccatcatcaggat-tcagtgaagtctccctgtatggtcacaggatgactccagcagttcTGATTATCCTGGGTTCCTGGATGTGTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112515369 312 + 204313951 TACTTGAGCATTCCTGGAAACTTTCTGGGAATGTTAATGGATATGAAAGTGGCTTCAACTATAAGAATTATAGGGGaatagcagaata-cctaactaaaaatggcttaaataagaaggccattttcaagcttacttcaggaggaattttgaaataggcagttccagggtcactttggctgctcaacagagtcttcaaggacccaggcactcttcataattctcttctgccatcatcagcat-tcagtgatgtctccctctatagtcacaggatgactccagcagttcTGATTGTCCTGGGTTCCTGGATGTGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44961195 313 + 71252344 TACCTGAGCATTCCTGGAAACTTTCTGGGAATGTTAACGGATATGAAAGTGGCTTCAACTATAAGAATTATAGGGGAATAGGagaataccctaactaaaaatggcttaaataagaaggccattttcaagcttacttcatgaggaattttgaaacaggcagttccagggtcagtttggctgctcaacagagtcttcaaggacccaggcactcttcataattctcttctgccatcatcaggat-tcagtgacgtctccccctatggtcacaggatgactccagcagttcTGATTATCCTGGGTTCCTGGATGTGTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 325718 312 - 1393929 TACCTGAGCATTCCTGGAAACTTTCTGGGAATGTTAATGGATATGAAAGTGGCTTCAACTATAAGAATTATAGGGGaatagcagaata-cctaactaaaaatggcttaaataagaaggccattttcaagcttacttcatgaggaattttgaaataggcagttccagggtcagtttggctgctcaacagagtcttcaaggacccagccactcttcataattttcttctgccatcatcaggat-tcagtgacgtctccctctatggtcacaggatgactccagcagttcTGATTATCCTGGGTTCCAGGATGTGTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1402047 310 - 15889662 TACCTGAGCATTCCTGGAAACTTTCTGGGAATGTTAATGGATATGAAAGTGGCTTCAACTATAAGAATTATAGGGGaatagcagaata-cgtaactaaaaatggcttaaataagaaggccattttcaagcttacttcatgaggaattttgaagtaggcagttccagggtcagtttggctgctcaac--agtcttcaaggacccaggcactcttcataattctcttctgctatcatcaagat-tcagtgacgtctccctctatggccacaggatgactccggcagttctgattatcctgggttcctggatgtgtt i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 560313 312 - 10520994 CACCCAAGCATTCCTAGGAACTTTCTGGGAATGTTAACTGATATGAAAGTGGCTTAGACTACAAGAATTATGAGGaaatatcagaata-cccaactaaaaatggcttaaataaggaggctactttaaagctcacctaatgaggaattttgaaataggcagttccagggtggctttggctactcaacagagtcttcaaggacccaggcactcttcatatttctcttctgctatcatcaggatgtcagtgaattctcccgctgtggtcacaggataactccagcagtt-TGGTTATTCTGTGTTCCTGGATGTGTT i proCoq1.NW_012147189v1 C 0 I 187 s canFam3.chr3 14300236 301 + 91889043 -CAATAAGCATTCCTAGGAACTTTCTGGGGATGTAAGCTGATATGAAAGTGTCTTAGATTACATGGATTGTAAAGaagcatcagaata-cccagcaaaaaatggcttcaataagaagaccatttcaaatctcacttaatagggaattttgaga-------ttccagggtcagtttggcagctcatcagagtcttcgag--tgaaggcgttcttcctattgcccttctg-gatcatcaacacgtcactgaagtctcctctcaTA-TCCTAGGATGACTCCAGTGGTTTCACTTCTCTCATGTTTCTAGATGTGAT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84817094 248 + 108143057 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76436930 3204 + 120421639 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=43008.000000 s hg38.chr5_GL383530v1_alt 17735 7 + 101241 ATGTGCA-------------------------------------------------------------------------- s panTro5.chr5 20246545 7 + 181907262 ATGTGCA-------------------------------------------------------------------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20263850 7 + 183735486 ATGTGCA-------------------------------------------------------------------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4749691 7 - 13748885 ATGTGCA-------------------------------------------------------------------------- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53784949 7 - 163208435 ATGTGCA-------------------------------------------------------------------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87812685 7 - 180051392 ATGTGCA-------------------------------------------------------------------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87917093 7 - 181584905 ATGTGCA-------------------------------------------------------------------------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1139963 7 - 8785636 ATGTGCA-------------------------------------------------------------------------- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1608218 7 + 27333823 ATGTGCA-------------------------------------------------------------------------- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1878318 7 - 91010382 ATGTGCA-------------------------------------------------------------------------- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1989397 7 + 5179401 ATGTGCA-------------------------------------------------------------------------- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7695136 7 - 21726897 ATGTGCA-------------------------------------------------------------------------- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112515681 7 + 204313951 ATGTGCA-------------------------------------------------------------------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44961508 7 + 71252344 ATGTGCA-------------------------------------------------------------------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 326030 7 - 1393929 ATGTGCA-------------------------------------------------------------------------- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1402357 7 - 15889662 aggtgca-------------------------------------------------------------------------- i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14300537 81 + 91889043 ATATGCAGATATGGTTTAACCTCTGTGAGGCTGATGCGTGGCATGTGCTGAGCAAAGGAGTCAGTTTGGCATCAGCATACA i canFam3.chr3 C 0 C 0 e micMur3.chr12 84817094 248 + 108143057 I e proCoq1.NW_012147189v1 560625 187 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76436930 3204 + 120421639 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=757896.000000 s hg38.chr5_GL383530v1_alt 17742 79 + 101241 TTTTTATAAATGTTTTTGTGATTTTTCG-GAGGGAGACAAATAGTAGACAACTCAGCCCATATCTACTATTTGTGGGATG----- s panTro5.chr5 20246552 79 + 181907262 TTTTTATAAATGTTTTTGTGATTTTTCG-GAGGGAGACAAATAGTAGACAACTCAGCCCATATCTACTATTTGTGGGATG----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20263857 79 + 183735486 TTTTTATAAATGTTTTTGTGATTTTTCG-GAGGGAGACAAATAGTAGACAACTCAGCCCATATCTACTATTTGTGGGATG----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4749698 79 - 13748885 TTTTTATAAATGTTTTTGTGATTTTTCG-GAGGGAGACAAATAGTAGACAACTCAGCCCATATCTACTATTTGTGGGATG----- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53784956 72 - 163208435 TTTTTATAAATGTTTTTGTAATTTTTCA-GAGGGAGACAAAT-------AACTCAGCCCATATCTACTATTTGTGGGATG----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87812692 79 - 180051392 TCTTTATAAATGTTTTTGTGATTTTTCG-GAGGGAGACAAATAGCAGACAACTCAGCCCATATCTACAATTTGTGGAATG----- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87917100 79 - 181584905 TCTTTATAAATGTTTTTGTGATTTTTCG-GAGGGAGACAAATAGCAGACAACTCAGCCCATATCTACAATTTGTGGAATG----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1139970 79 - 8785636 TCTTTATAAATGTTTTTGTGATTTTTCG-GAGGGAGACAAATAGCAGACAACTCAGCCCATATCTACAATTTGTGGAATG----- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1608225 79 + 27333823 TCTTTATAAATGTTTTTGTGATTTTTCG-GAGGGAGACAAATAGCAGACAACTCAGCCCATATCTACAATTTGTGGAATG----- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1878325 79 - 91010382 TCTTTATAAATGTTTTTGTGATTTTTCG-GAGGGAGATAAATAGCAGACAACTCAGCCCATATCTACAATTTGTGGAATG----- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1989404 79 + 5179401 TCTTTATAAATGTTTTTGTGATTTTTCG-GAGGGAGACAAATAGCAGACAACTCAGCCCATATCTACAATTTGTGGAATG----- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7695143 79 - 21726897 TCTTTATAAATGTTTTTGTGATTTTTCG-GAGGGAGACAAATAGCAGACAACTCAGCCCATATCTAAAATTTGTGGAATG----- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112515688 78 + 204313951 TCTTTCTAAATGTTTTTGTGATTTTTCC-GAGGGCGACAAATAGTAGACAACT-ATCCCATATCTACTATTTCTGGGATG----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44961515 80 + 71252344 TCTTTATAAATGTTTTTGTGGTTTTTTCGGAGGGTGACAAATAGTAGACAAATCATCCCATACCTACTATTTCTGGGATG----- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 326037 79 - 1393929 TCTTTATAAATGTTTTTATGGTTTTTCA-GAGGGCGACAAATAGTAGACAACTCATCCCATATCTACTATTTCTGGGATG----- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1402364 77 - 15889662 tctttataaatgtttttgtga-ttttca-gagggcgacaaatagtagacaact-atcccatatctactatttctgggatg----- i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76440134 75 + 120421639 tctGTGTGTGTGTGTGTGTGTATTTTAG-GAAGAAGATAAATGGTAG----CTTTATAAATTTCCTCTTTTACTGAGGAG----- i mm10.chr13 I 3204 I 8 s canFam3.chr3 14300618 74 + 91889043 --TTTTTGTTTGTTTCGGTGATTTTTAG-GAGGGAA--AAGTGGTG------TCTCCCTGCTTTTTTTTTTGCCAGGGAGGAAAA i canFam3.chr3 C 0 C 0 e micMur3.chr12 84817094 248 + 108143057 I e proCoq1.NW_012147189v1 560625 187 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=923860.000000 s hg38.chr5_GL383530v1_alt 17821 76 + 101241 ---TTCCCATTATCACCCAACAGGCTTCATCTTAGGTATTTTTGGTCAGAACTAAATTGCATATTGACTTTTTATACCG s panTro5.chr5 20246631 76 + 181907262 ---TTCCCATTATCACCCAACAGGCTTCATCTTAGGTATTTTTGGTCAGAACTAAATTGCATATTGACTTTTTATACAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20263936 76 + 183735486 ---TTCCCATTATCACCCAACAGGCTTCATCTTAGGTATTTTTGGTCAGAACTAAATTGCATATTGACTTTTTATACAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4749777 76 - 13748885 ---TTCCCATTATCACCCAACAGGCTTCATCTTAGGTATTTTTGGTCAGAACTAAATTGCATATTGACTTTTTATACAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53785028 76 - 163208435 ---TTCCCATTATCACCCAACAGGCTTCATCTTAGGTATTTTTGGTCAGAACTAAATTGCATATTGACTTTTTATACAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87812771 76 - 180051392 ---TTCCCATTATCACCCAACAGGCTTCATCTTAGGTATTTTTGGTCAGAACTAAATTGCATATTGACTTTTTATACAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87917179 76 - 181584905 ---TTCCCATTATCACCCAACAGGCTTCATCTTAGGTATTTTTGGTCAGAACTAAATTGCATATTGACTTTTTATACAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1140049 76 - 8785636 ---TTCCCATTATCACCCAACAGGCTTCATCTTAGGTATTTTTGGTCAGAACTAAATTGCATATTGACTTTTTATACAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1608304 76 + 27333823 ---TTCCCATTATCACCCAACAGGCTTCATCTTAGGTATTTTTGGTCAGAACTAAATTGCATATTGACTTTTTATACAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1878404 76 - 91010382 ---TTCCCATTATCACCCAACAGGCTTCATCTTAGGTATTTTTGGTCAGAACTAAATTGCATATTGACTTTTTATACAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1989483 76 + 5179401 ---TTCCCATTATCACCCAACAGGCTTCATCTTAGGTATTTTTGGTCAGAACTAAATTGCATATTGACTTTTTATACAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7695222 76 - 21726897 ---TTCCCATTATCACCCAACAGGCTTCATCTTAGGTATTTTTGGTCAGAACTAAATTGCATATTGACTTTTTATACAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112515766 76 + 204313951 ---TTTCCATGATCAccgagcaggcttcgtcttaggtatttttggtcagaactaaactgcatgctgatcttttatccaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44961595 75 + 71252344 ---TTTCCATGATCAcc-agcagactttgtcttatgtatttttggtcagaactaaactgcatgctaatcttttatccaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 326116 76 - 1393929 ---TTTTCATGATCACCCAGCAGGCTTCGTCTTAGGTATTTTTGGTTAGAACTAAACTGCATGCTAATCTTTTATCCAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1402441 76 - 15889662 ---tttccatgatcacccagcaggcttcgtcttagatatttttggtcagaactaaactgcatgctgatcttttatccaa i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 560812 76 - 10520994 ---TTCCCATGATCACCCAGCAGGCTTTACCTTAAGTCTTTTTGGTCAGAGCTGAATTGTATGCCCACCTGTTATCCAA i proCoq1.NW_012147189v1 I 187 C 0 s mm10.chr13 76440217 76 + 120421639 ---TTTTTGTGATTGTTCAACAGTTTTCAGCCTTGGAATTTTTGGTCACAATTAAATTACATGCCATCATTTTATCCAG i mm10.chr13 I 8 C 0 s canFam3.chr3 14300692 76 + 91889043 TCTTTCCTGTGAT---CCAGCAGGCTGCTTTTGTAGGCCTTTTGGTCAGAACAGGATTGCATGCCCACCTTTCACCCAG i canFam3.chr3 C 0 C 0 e micMur3.chr12 84817094 248 + 108143057 I e dasNov3.JH570378 1217346 4191 - 11655695 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=552352.000000 s hg38.chr5_GL383530v1_alt 17897 38 + 101241 TAATCAGCAAAGACTATATA-TAACCTCTATCTGGACCA s panTro5.chr5 20246707 38 + 181907262 TAATCAGCAAAGACTATATA-TAACCTCTATCTGGACCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20264012 38 + 183735486 TAATCAGCAAAGACTATATA-TAACCTCTATCTGGACCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4749853 38 - 13748885 TAATCAGCAAAGACTATATA-TAACCTCTATCTGGACCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53785104 38 - 163208435 TAATCAGCAAAGACTATATA-TAACCTCTATCTGGACCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87812847 38 - 180051392 TAATCAGCAAAGACTATATA-TAACCTCTATCTAGACCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87917255 38 - 181584905 TAATCAGCAAAGACTATATA-TAACCTCTATCTAGACCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1140125 38 - 8785636 TAATCAGCAAAGACTATATA-TAACCTCTATCTAGACCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1608380 38 + 27333823 TAATCAGCAAAGACTATATA-TAACCTCTATCTAGGCCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1878480 38 - 91010382 TAATCAGCAAAGACTATATA-TAACCTCTATCTAGACCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1989559 38 + 5179401 TAATCAGCAAAGACTATATA-TAACCTCTATCTAGACCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7695298 38 - 21726897 TAATCAGCAAAGACTATATA-TAACCTCTATCTAGACCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112515842 38 + 204313951 taatcagcaaagactatctg-taacttctatctagacca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44961670 38 + 71252344 taatcagcaaagactatctg-taacttctatctagacca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 326192 38 - 1393929 TAATCAGCAAAGACTATCTG-TAACTTCTATCTAGACCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1402517 38 - 15889662 taatcagcaaagactatctg-taacttctatctagacca i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84817342 38 + 108143057 TAATCAGCAAAGGCTATATA-TAAACTCTATCTAGACca i micMur3.chr12 I 248 I 276 s proCoq1.NW_012147189v1 560888 38 - 10520994 TGATCAGCAAAGACTATATA-TAACCTCTATCTAGACCA i proCoq1.NW_012147189v1 C 0 C 0 s mm10.chr13 76440293 37 + 120421639 TTATTAAC--AGACTACAAAGCAATCTCTGTGTAGACCA i mm10.chr13 C 0 C 0 s canFam3.chr3 14300768 38 + 91889043 TTACCAGCTCAGACCATATA-GACCTTCAATCTAGACCA i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 1217346 4191 - 11655695 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=823521.000000 s hg38.chr5_GL383530v1_alt 17935 71 + 101241 ATCACAATTGACCTCCTGGGGATAAGCATATGGCTACTAGacagtcctcacgggaagtaagggagaagaca s panTro5.chr5 20246745 71 + 181907262 ATCACAATTGACCTCCTGGGGATAAGCATATGGCTACTAGacagtcctcacaggaagtaagggagaagaca i panTro5.chr5 C 0 C 0 s panPan2.chr5 20264050 71 + 183735486 ATCACAATTGACCTCCTGGGGATAAGCATATGGCTACTAGacagtcctcacaggaagtaagggagaagaca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4749891 70 - 13748885 ATCACAATTGACCTTCTAGGGATAAGCATATGGCTACTAGACAGTCCTCACGGGAAGTAAGGGA-AAGaca i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53785142 71 - 163208435 ATCACAATTGACCTCCTGGGGATAAGCATATGGCTACTAGACAGTCCTCACGGGAAGTAAGGGAGAAGACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87812885 71 - 180051392 ATCACAATTGACCTTCTGGGGATAAGCATATAGCTTCTAGacagtcctcacaagaaataagggagaagaca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87917293 71 - 181584905 ATCACAATTGACCTTCTGGGGATAAGCATATAGCTTCTAGACAGTCCTCACAAGAAGTAAGGGAGAAGaca i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1140163 71 - 8785636 ATCACAATTGACCTTCTGGGGATAAGCATATAGCTTCTAGacagtcctcacaagaaataagggagaagaca i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1608418 71 + 27333823 ATCACAATTGACCTTCTGGGGATAAGCATATAGCTTCTAGacagtcctcacaagaaataagggagaagaca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1878518 71 - 91010382 ATCACAATTGACCTTCTGGGGATAAGCATATAGCTTCTAGacagtcctcacaagaaataagggagaagaca i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1989597 71 + 5179401 ATCACAATTGACCTTCTGGGGATAAGCATATAGCTTCTAGacagtcctcacaagaaataagggagaagaca i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7695336 71 - 21726897 ATCACAATTGACCTTCTGGGGATAAGCATATAGCTTCTAGacagtcctcacaagaaataagggagaagaca i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112515880 71 + 204313951 atcataattgatctcctgggaataggCATATGGCTATCAGacaatcctcaaaggaaataagggagaaaaca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44961708 71 + 71252344 atcataattgatctcctgggaataggCATATGGCTATCAGatagtcctcacaggaaataagggagaaaaca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 326230 71 - 1393929 GTCATAATTGAACTCCTGCGAATAGGCATATGGCTGTCAGacagtcctcacaggaaataagggagaaaaca i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1402555 71 - 15889662 atcataattgatctcctgggaataggCATATGGCTATCAGacagtcctcacaggaaataagggagaaaaca i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 560926 70 - 10520994 ATACCAATTGCCTTCCTGGG-ATAGGCATATTGCTACTCAATGGTCCTCACAGGAAATAATGAATAAAact i proCoq1.NW_012147189v1 C 0 C 0 s mm10.chr13 76440330 70 + 120421639 ACTACAGTTGACCTCTTGGGACTAGGTGCTTCACTGCCAG-CTGTCCTTGAAGGTTGTAGGTAGCAAAGCA i mm10.chr13 C 0 C 0 s canFam3.chr3 14300806 70 + 91889043 ATCACAGTTGGTCTCCTATGAATAGGCATATTGCTACTCACCAAT-CTCATAGGAAataaaggacataaca i canFam3.chr3 C 0 C 0 e micMur3.chr12 84817380 276 + 108143057 I e dasNov3.JH570378 1217346 4191 - 11655695 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=450380.000000 s hg38.chr5_GL383530v1_alt 18006 33 + 101241 -taaaggaagatggccagctat--taactatttttt s panTro5.chr5 20246816 33 + 181907262 -taaaggaagatggccagctat--taactatgtttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20264121 33 + 183735486 -taaaggaagatggccagctat--taactatgtttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4749961 33 - 13748885 -taaaggaagatggccagctat--taactatgtttt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53785213 33 - 163208435 -TAAAGGAAGATGGCCAGCTAT--TAACTATGTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87812956 33 - 180051392 -taaaggaagatggccagctat--taactatgtttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87917364 33 - 181584905 -taaaggaagatggccagctat--taactatgtttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1140234 33 - 8785636 -taaaggaagatggccagctat--taactatgtttt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1608489 33 + 27333823 -taaaggaagatggccagctat--taactatgtttt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1878589 33 - 91010382 -taaaggaagatggccagctat--taactatgtttt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1989668 33 + 5179401 -taaaggaagatggccagctat--taactatgtttt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7695407 33 - 21726897 -taaaggaagatggccagctat--taactatgtttt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112515951 33 + 204313951 -taaaggaagatggccagctgt--taactatgtttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44961779 26 + 71252344 -taaa-------ggccagctgt--taactatgtttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 326301 26 - 1393929 -taaa-------ggccagctgt--taactatgtttt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1402626 33 - 15889662 -taaaggaagatggccagctgt--taactatgtttt i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84817656 32 + 108143057 -taaaggaagatggccagctat--taa-tatatttt i micMur3.chr12 I 276 C 0 s proCoq1.NW_012147189v1 560996 32 - 10520994 -taaaggaagatggccagctat--taa-tatatttt i proCoq1.NW_012147189v1 C 0 C 0 s mm10.chr13 76440400 35 + 120421639 -TAACATAAGGTTGTTAATTATGATAATTACATTTT i mm10.chr13 C 0 C 0 s canFam3.chr3 14300876 34 + 91889043 taagaggaaggtagccagctgt--taactatctttt i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 1217346 4191 - 11655695 I e otoGar3.GL873536 1281316 2875 - 29863360 I a score=7771769.000000 s hg38.chr5_GL383530v1_alt 18039 599 + 101241 ccaggatctgaaaagaaa--a--ctgggttaaatt------------------------------------------------------acactaaagagaatttagaatggcgtttagg-aagaaagtgcagacaagaaagtggtattgtacaatggatcacattattgaacttgtgcat--atatattccc----t----atcttctaaaaacagaatgaatagattt---------tgactagga-cataattcatccttgcttggagcttggaagatgcagtaaattaccttaaagcattttcTTCATCATGTTGTTAA--GAGAATATCATCAGCAAGGAATTAGTTAAGAATTGTATTAAAA---TTGTAAAAATGGGCATGGCCTCCTCTGCTTTGAAAGATCTATAAGTTCAGAAGTCC---CAA----TCTGTTCCATTTTTGTGACC-GTGTTCTTCCAGTTGAGTTAGtcttaaactttactgtgt-tta-gaattaattgggagcttgttaaacatacagatccttgggcaccactttccataaatgttgcttcagtaggtttattagttttctgtatctccataattaattattaaacttagtgacat-aaacaatagatatgtattatttcacagtactgtagtcagaagtagctcagggaggctc---------aactagg-ttctcta s panTro5.chr5 20246849 598 + 181907262 ccaagatctgaaaagaaa-----ctgggttaaatt------------------------------------------------------acactaaagagaatttagaatggtgtttagg-aagaaagtgcagacaagaaagtggtattgtacaatggatcacattattgaacttgtgcat--gtatattccc----t----atcttctaaaaacagaatgaatagattt---------tgactagga-cataattcatccttgcttggagcttggaagatgcagtaaattaccttaaagcattttcTTCATCATGTTGTTAA--GAGAATATCATCAGCAAGGAATTAGTTAAGAATTGTATTAAAA---TTGTAAAAATGGGCATGGCCTCCTCTGCTTTGAAAGATCTATAAGTTCAGAAGTCC---CAA----TCTGTTCCATTTTTGTGACC-GTGTTCTTCCAGTTGAGTTAGtcttaaactttactgtgt-tta-gaattaattgggagcttgttaaacatacagatccttgggcaccactttccataaatgttgcttcagtaggtttattagttttctgtatctccataattaattattaaacttagtgacat-aaacaatagctatttattatttcacagtactgtagtcagaagtagctcagggaggctc---------aactagg-ttctcta i panTro5.chr5 C 0 C 0 s panPan2.chr5 20264154 598 + 183735486 ccaagatctgaaaagaaa-----ctgggttaaatt------------------------------------------------------acactaaagagaatttagaatggtgtttagg-aagaaagtgcagacaagaaagtggtattgtacaatggatcacattattgaacttgtgcat--gtatattccc----t----atcttctaaaaacagaatgaatagattt---------tgactagga-cataattcatccttgcttggagcttggaagatgcagtaaattaccttaaagcattttcTTCATCATGTTGTTAA--GAGAATATCATCAGCAAGGAATTAGTTAAGAATTGTATTAAAA---TTGTAAAAATGGGCATGGCCTCCTCTGCTTTGAAAGATCTATAAGTTCAGAAGTCC---CAA----TCTGTTCCATTTTTGTGACC-GTGTTCTTCCAGTTGAGTTAGtcttaaactttactgtgt-tta-gaattaattgggagcttgttaaacatacagatccttgggcaccactttccataaatgttgcttcagtaggtttattagttttctgtatctccataattaattattaaacttagtgacat-aaacaatagctatttattatttcacagtactgtagtcagaagtagctcagggaggttc---------aactagg-ttctcta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4749994 597 - 13748885 ccaagatctgaaaagaaa--a--ctgggttaaatt------------------------------------------------------acactaaagagaatttagaatggc-tttagg-aagaaagtgcagacaagaaagtggtattgtacaatggatcacattattgaacttgtgcat--atatattccc----t----atcttctaaaaacagaatgaatagattt---------tgactagga-cataattcatccttgcttggagcttggaagatgcagtaaattaccttaaagcattttcTTCATCATGTTGTTAA--GAGAATATCATCAGCAAGGAATTAGTTAAGAATTGTATTAAAA---TTGTAAAAATGGGCATGGCCTCCTCTGCTTTGAAAGATCTATAAGTTCAGACGTCC---CAA----TCTGTTCCATTTTTGTGACC-GTGTTCTTCCAGTTGAGTTAGtcttaaactttactgtgt-tta-gaattaattgggagcttgttaaacatacagatcctt-ggcaccactttccataaatgttgcttcagtaggtttattagttttctgtatctccataattaattattaaacttagtggcat-aaacaatagctatttattatttcacagtactgtagtcagaagtagctcagggaggctc---------aactagg-ttctcta i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53785246 600 - 163208435 CCAAGATCTGAAAAGAAA--A--CTGGGTTAAATT------------------------------------------------------ACACTAAAGAGAATTTAGAATGGCTTTTAGG-AAGAAAGTGCAGATAAGAAAGTGGTATTGTACAATGGATCACATTATTGAACTTGTGCAT--ATATATTCCG----T----ATCTTCTAAAAAC--AATAAATAGATTT---------TGACTAGGA-CATAATTCAGCCTTGTTTGGAGCTTGGAAGATGCAGTAAATTACCTTAAAGCATTTTCTTCATCATGTTGTTAA--GAGAATATCATCAGCAAGGAATTAGTTAAGAATTGTATTAAAATTGTTGTAAAAATGGGCATGGCCTCCTCTGCTTTGAAAGATGTATAAGTTCAGAAGTCC---CAG----TCTGTTCCATTTTTGTGACT-GTGTTCTTCCAGTTGAGTTAGtcttaaactttactgtgt-tta-gaattaattgggggtttgttaaacatacagattctcaggcagcactttccataaatgttgcttcagtagatgtattagttttctgtatttgcataattaattattaaacttagtggcat-aaacaatacctatttgtaatttcacagtactgtagtcagaagtagctcagggaggctc---------agctagg-ttctcta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87812989 597 - 180051392 ccaagatctgaaaagaaa--a--ctgggttaaatt------------------------------------------------------acactaa--agaatttaggatggcttttagg-aagaaagtgcaaacaagaaagtggtattgtactctggatcacattattgaacttgtacataaatatattccc----t----atcgtctaaaaacagaatgaatagattt---------tgagtagga-cttaattcagccttgcttggagcttggaagatgcagtaaattaccttaaagcattttcTTCATGATGTTGATAA--GAGAATATCATCAGCAAGGAATTAGTTAAGAATTGTATTAAAATTGTTGTAAAAATGCGCATGGCCTCTT---CTTTGAAAGATCTATAAGTTCAGAAGTCC---CAA----TCTGTTCCATTTTTGTGACC-ATGTTCTTCCAGTTGAGTTAGtcttaaactttactgtgt-tta-gagtaaattgggagcttgttaaacatacagattc--gggcaccactttccataaatgttgcttcagtaggtgtattagttttctgtatctacataattaattattaaacttagtggcat-aaacaatacctatttgttatttcacagtactgtagtcagaagtagttcagggaggctc---------aactagg-ttctcta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87917397 597 - 181584905 ccaagatctgaaaagaaa--a--ctgggttaaatt------------------------------------------------------acactaa--agaatttaggatggcttttagg-aagaaagtgcaaacaagaaagtggtattgtactctggatcacattattgaacttgtacataaatatattccc----t----atcgtctaaaaacagaatgaatagattt---------tgagtagga-cttaattcagccttgcttggagcttggaagatgcagtaaattaccttaaagcattttcTTCATGATGTTGATAA--GAGAATATCATCAGCAAGGAATTAGTTAAGAATTGTATTAAAATTGTTGTAAAAATGGGCATGGCCTCTT---CTTTGAAAGATCTATAAGTTCAGAAGTCC---CAA----TCTGTTCCATTTTTGTGACC-ATGTTCTTCCAGTTGAGTTAGtcttaaactttactgtgt-tta-gagtaaattgggagcttgttaaacatacagattc--gggcaccactttccataaatgttgcttcagtaggtgtattagttttctgtatctacataattaattattaaacttagtggcat-aaacaatacctatttgttatttcacagtactgtagtcagaagtagttcagggaggctc---------aactagg-ttctcta i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1140267 597 - 8785636 ccaagatctgaaaagaaa--a--ctgggttaaatt------------------------------------------------------acactaa--agaatttaggatggcttttagg-aagaaagtgcaaacaagaaagtggtattgtactctggatcacattattgaacttgtacataaatatattccc----t----atcgtctaaaaacagaatgaatagattt---------tgagtagga-cttaattcagccttgcttggagcttggaaaatgcagtaaattaccttaaagcattttcTTCATGATGTTGATAA--GAGAATATCATCAGCAAGGAATTAGTTAAGAATTGTATTAAAATTGTTGTAAAAATGGGCATGGCCTCTT---CTTTGAAAGATCTATAAGTTCAGAAGTCC---CAA----TCTGTTCCATTTTTGTGACC-ATGTTCTTCCAGTTGAGTTAGtcttaaactttactgtgt-tta-gagtaaattgggagcttgttaaacatagagattc--gggcaccactttccataaatgttgcttcagtaggtgtattagttttctgtatctacataattaattattaaacttagtggcat-aaacaatacctatttgttatttcacagtactgtagtcagaagtagttcagggaggctc---------aactagg-ttctcta i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1608522 599 + 27333823 ccaagatctgaaaagaaa--a--ctgggttaaatt------------------------------------------------------acactaa--agaatttaggatggcttttagg-aagaaagtgcaaacaagaaagtggtattgtactctggatcacattattgaacttgtacataaatatattccc----t----atcgtctaaaaacagaatgaatagattt---------tgagtagga-cttaattcggccttgcttggagcttggaagatgcagtaaattaccttaaagcattttcTTCATGATGTTGATAA--GAGAATATCATCAGCAAGGAATTAGTTAAGAATTGTATTAAAATTGTTGTAAAAATGGGCATGGCCTCTT---CTTTGAAAGATCTATAAGTTCAGAAGTCC---CAA----TCTGTTCCATTTTTGTGACC-ATGTTCTTCCAGTTGAGTTAGtcttaaactttactgtgt-tta-gagtaaattgggaacttgttaaacatacagattcttgggcaccactttccataaatgttgcttcagtaggtgtattagttttctgtatctacataattaattattaaacttagtggcat-aaacaatacctatttgttatttcacagtactgtagtcagaagtagttcagggaggctc---------aactagg-ttctcta i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1878622 599 - 91010382 ccaagatctgaaaagaaa--a--ctgggttaaatt------------------------------------------------------gcactaa--agaatttaggatggcttttagg-aagaaagtgcaaacaagaaagtggtattgtactctggatcacattattgaacttgtacataaatatattccc----t----atcgtctaaaaacagaatgaatagattt---------tgagtagga-cttaattcggccttgcttggagcttggaagatgcagtaaattaccttaaagcattttcTTCATCATGTTGATAA--GAGAATATCATCAGCAAGGAATTAGTTAAGAATTGTATTAAAATTGTTGTAAAAATGGGCATGGCCTCTT---CTTTGAAAGATCTGTAAGTTCAGAAGTCC---CAA----TCTGTTCCATTTTTGTGACC-ATGTTCTTCCAGTTGAGTTAGtcttaaactttactgtgt-tta-gagtaaattgggagcttgttaaacacacagattcttgggcaccactttccataaatgttgcttcagtaggtgtattagttttctgtagctacataattaattattaaacttagtggcat-aaacaatacctatttgttatttcacagtactgtagtcagaaggagttcaggggggctc---------aactagg-ttctcta i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1989701 596 + 5179401 ccaagatctgaaaagaaa--a--ctgggttaaatt------------------------------------------------------acactaa--agaatttaggatggcttttagg-aagaaagtgcaaacaagaaagtggtattgtactctggaTCACATTATTGAACTTGTACATAAATATATTCCC----T----ATCGTCTAAAAACAGAATGAATAGATTT---------TGAGTAGGA-CTGAATTCGGCCTTGCTTGGAGCTTGGAAGATGCAGTAAATTATCTTAAAGCATTTTCTTCATGATGTTGATAA--GAGAATATCATCAGCAAGGAATTAGTTAAGAATTGTATTAAAATTGTTGTAAAAATGGGCATGGCC---T---CTTTGAAAGATCTGTAAGTTCAGAAGTCC---CAA----TCTGTTCCATTTTTGTGACC-ATGTTCTTCCAGTTGAGTTAGtcttaaactttactgtgt-tta-gagtaaattgggagcttgttaaacatacagattcttgggcaccactttccataaatgttgcttcagtaggtgtattagttttctgtatctacacaattaattattaaacttagtggcat-aaacaatacctatttgttatttcacagtactatagtcagaagtagttcagggaggctc---------aactagg-ttctcta i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7695440 599 - 21726897 ccaagatctgaaaagaaa--a--ctgggttaagtt------------------------------------------------------acactaa--agaatttaggatggcttttcgg-aagaaagtgcaaacaagaaagtggtattgtacactggatcacattattgaacttgtacataaatatattccc----t----atcttctaaaaacagaatgaatagattt---------tgagtagga-cataattcggccttgcttggagcttggaagatgcagtaaattaccttaaagcattttcTTCATCGTGTTGATAA--GAGAATATCATCAGCAAGGAATTAGTTAAGAATTGTATTAAAATTGTTGTAAAAATGGGCATGGCCTCTT---CTTTGTAAGATCTTTAAGTTCAGAAGTCC---CAA----TCTGTTCCATTTTTGTGACC-ATGTTCTCCCAGTTGAGTTAGtcttaaactttactgcgt-tta-gagtaaattgggagcttgttaaacatacagattcttgggcaccactttccagaaatgttgcttcagtaggtgtattagttttctgtatctacataattaattattaaacttagtggcat-aaacaatacctatttgttatttcacagtactgtagtcagaagtagttcagggaggctc---------aactagg-ttctcta i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112515984 577 + 204313951 ccaagatctgaaaagaaa--a--ctggattaaatt------------------------------------------------------acactaaagagagtttcaaatggctttaagg-acgaacgtgcagacaagaaagtggtgttatacactggataacattattgaacttgtgcat--atatattccc----taacaatcttctaaaaacagaacgagtagattg---------tgacta-ga-tataatttagccttgctcagagcttggaagatgcagtaaattaTCTTAGAGCATTTTATTCATCATATTGATAA--GGAAATATCATCAGCAAGGAATTAGTTAACAATTGTATTAAAATTGTGGTAAAAATGGGCATGGCCTCCTCTGCTTTGACAGATGTATAAGTTCAGAAGTAC---CAG----TCTGTTCCATTTTTG----------------------GTTAGtcttaaactttactgtgt-tta-gaattaattggg---------aacatacagattcttcggtaccacttttcataaatgttgcttcagtaggtgtattagttttctgtatctacgtaattaatgattaaacttagcggcataaaacaacacctatttattatttcccaatactgtagtcagaaatagctcaggtaggctc---------aactaggtttctcta i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44961805 601 + 71252344 ccaagatctgaaaagaaa--a--ctggattaaatt------------------------------------------------------acacttaagagaatttcaaatggctttcagg-acgaacgtgcagacaagaaagtggtattatacactggataacattactgaac-tgtgcat--atatgttccg----tagcaatcttctaaaaacagaatgagtgcattg---------tgacta-ga-cttaattcagccttgcccagagcttggaagatgcagtaaattatctcaaagCATTTTATTCATCATGTTGATAA--GGAAATATCATCAGCAAGGAATTAGTTAACAATTGTATTAAAATTGTGGTAAAAATGGGCACAGCCTCCTCTGCTTTGACAGACTGATAAGTTCAGAAGTAT---CAGTCCATCTGTTCCATTTTTGTGACC-ATGTTCTTCCAGTTGAGTTAGtcttaaactttcctgtgt-tta-gaattaattggg---------aacatacagattcttgggtaccacttttcataaacattgcttcagtaggtgtattaattttctgtttctttgtaattaatgattaaacttagtggcataaaacaatgcctatttattatttcccaatactgtagtcagaaatagctcaggtaggctc---------aactaggtttctcaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 326327 597 - 1393929 ccaagatctgaaaagaaa--a--ctggattaaatt------------------------------------------------------acactaaagagaatttcaaatggcttttagt-aagaacatgcagacaagaaagtggtattatacactggataacattattgcacttgtgcat--atatattccc----taacaatcttctaaaaacagaatgaatacattg---------tgacta-ga-cataattcagccttgctcagagcttggaagatgcagtaaatTATTTTAAAGCATTTTATTCATCATGTTGATAA--GGAAATATCATCAGCAAGGAATTAGTTAACAATTGTATTAAAATTGTGGTAAAAATGGGCATGGCCTCCTCTGCTTCGACAGATTTATAAGTTCAGAAGTAC---CAG----TCTGTTCCA-TTTTGTGACC-ATGTTCTTCCAGTTGAGTTAGtcttaaactttactgtgg-tta-gaattaattggg---------aacatacagattcttgggtaccacatttcataaatgttgcttcagtaggtgtattagttttctgtacctttgtaattaatgattaaacttagtggcacaaaacaatgcctatttattatttcccaatactgtagtcagaaatagctcaggtaggctc---------aactaggtttctcta i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1402659 594 - 15889662 ccaagatctgaaaagaaa--a--ctggattaaatt------------------------------------------------------acactaaagagaatttcaaatggcttttagg-aagaacgtgcagacaagaaagtggtattatacactggataacattattgaacttgtgcat--atatattccc----taacaatcttctaaaaacagaaagaatAGATTG---------TGACTA-GA-CATAATTCAGCCTTGCTCAGAGCTTGGAAGATGCAGAAAATTATCTTAAAGCATTTTATTCATCATGTTGATAA--GGAAATATGATCAGCAAGGAATTAGTTAACAATTGTATTAAAATTGTGGTAAAAATGGGCATGGCCTCCTCTGCTTTGACAGATTTATAAGTTCAGAAGTAC---CAG----TCTGTTCCATTATTGTGACC-ATGTTCTTCCAGTTGAGTTAGtcttaaactttactgtgt-tta-gaattaattggg---------aacatacagattcttgggtaccacttttcataaatgttgcttcagtaggtgtattaattttctgtatctacg----taatgattaaacttagcggtgtaaaataatgcctatttattatgtcccaatactgtagtcagaaatagctcaggtaggctc---------aactaggtttctcta i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84817688 604 + 108143057 ccaagatctgaagagagaaaa--acagcttaaatt------------------------------------------------------atatcaaagagaatttagaatggcttttaga-aagaatgtacagacaagaaagtgatattgtacactggatcatattattgagattatggat--atgtattcactaaat----atcttctgaaat-agaatgaatggattt---------tgactagga-cataattcagccttgctcggatgctggaaggtacactaaatgatcATA-AGTATTTCTGTAATCATGTTGATAAGAGGAAATGTTATCAGCAAGGAATTAGCTAAGAACTGTATTAAAATTGTTGT--AAATTGGCATGGCCTCCCAGGCTTTGAGAGAC----AAGTTCAGAAGTA----TAA----TCTGTTCCATTTTTATGATCAATGTTCTTCTAGTGcagttagtcttaaactttactgtatataa-aaactaattgggagcttgttaaccatacaaattcttggccaccaatttccataattgctgactcagtagatgtactagttttctgtggctgcataacaaacgatcaaactcagtggcataaaacagtaccaattttctatgtcacagttctgtagtcagaagtagctcaggtaggcat---------gactagg-ttctctA i micMur3.chr12 C 0 I 1441 s proCoq1.NW_012147189v1 561028 602 - 10520994 ccaagatctgaaaagagaaaa--ccagcttaaatt------------------------------------------------------acatcaaagagaatttagaa-gacttttaga-aaaaatgtacagacaagaaagtggtattgttcactggatcacattattgagattatggat--atgtattcactaaat----atcttctgaaat-agaatgaatggattt---------tgactagaa-cataattcagccttgcttggaggctggaagatgtactaaatgaccGTA-AGTGTTTTTCTCATCATGTTGATAAAGGGAAATGTCATCAGCAAGAAATTAGCTAAGAACTGTATTGAAATTGTTGT--AAATGTGTATGGCCTCCCAGGCTTTGAGAGAC----AAGTTCGGCAGTA----CGT----TCTGTTCCATTTTTATGATC-ATATTCTTCTAGTGcagttagtcttaaactttactatatataa-aaattaattgggagcttgttaactatacaaattcttgaccaccactttccagaaatgttgactcggtagatgtattagttttctgttgctgcataacaaatgatcaaacttagcagcataaaacagtaccaattttttatgtcacagttctgtagtcagaagtagctcaggtgggctc---------aactagg-ttctcta i proCoq1.NW_012147189v1 C 0 I 21082 s otoGar3.GL873536 1284191 569 - 29863360 ccaaaatcagaaaaaaga-------agtttaaatt-----------------------------------------------------------aaagagaacttagaatggctcttagg-aaaaaagtacagacacaaagatGGTATTGTACACTGGATCATGTTATTAAGATTACACAT--GTATATTCAC----T----ATGTTCTGAAAA-AGGATGAATAGATTT---------TGACTAGAA-CATAATTCAGCTTTGCTTAGAGGCTGAAAGATGCAGTAATTGATCCTA-AGTGTTTCCTTTATCATGTTGATAAAGGGAAATGTCATCAGCAAG-CATTAGATAGGAACTGTATTGAAATTGTTGT--AAAGGGGCATTGCCTCCCAGGCCTTGAGAGAC----ACGTTCAGAAGTA----CAA----GCTGTTCCGTTTTTATAATC-GTGCTCTTCTAATTcagttagtcttaaaatttattatatgtca-acattaatggggagcttgttaaacatacagattcttgggcaccactttcTGTAAATGTTGAttc------------------ctgttgctgcataacaaatgacccaacttagtagca-aaaacaatgccaacttattatttcacagttccatagtcagaagttgttcaggtggtctt---------gactagg-ttctctg i otoGar3.GL873536 I 2875 C 0 s mm10.chr13 76440435 637 + 120421639 TCAAGATCTGAGAGGAGA--AACCCAGGTAAAATGATGAAGGTGCTTGGCTGGTAACATTATTTTCTTAGATCTGAGATGAGAAATACAACATGAAAAAGAATTTAGAATTGTTTTCAG-----AATGTTTAGACAAGATCATGGTATTGTGCA-TGGATCTTCTTATTGATATGTTTTATGCATAAATTCCC----T---AAAGATCTGAGGGTAGAATCAGTTTATATGGGAGGAAGGGAGCAGGAGGGTAATTTAGCCTTGCC--------AGAAGGTAAGATAAATGACATTC-AGCCTTTCCTTCATCATGATGATAACAGGAAAGGTCATTACCATGGAATTATCTAAGAACTTTATTCAAATGGCCACAAG--------------------CTTTG--AGACTTGTATGTTCAAAAGTACAGTCAA----TGTATTCTATTTTTGTGACC-ACACTCTTA----TGACTTAGTTTTAAACTATACTGTGT-ATA-ACGTTAAATGGAAGCTTATTAACCATGCAAAT--------AGCACCTTTCAGAGAGGTTTCTTCAGTAtgcatttcagttttctataactgagcaa-tgatacgaaagcatagtagtataagaccgtgtctttccattactttacagtcccacagtgagatgtggctcatttcagctccctggggaagtctagg-ttcactg i mm10.chr13 C 0 C 0 s canFam3.chr3 14300910 593 + 91889043 ccaagatcagaaaagagagaa--ttgacttaaaag------------------------------------------------------acattaaagagaatttagaatgccgctaaagcaagaacatgcagccaagaaagtggtgttgtgctctggaccata-tattgacagtgagcat--attta-tcac----taaaggttttctgaaaatcaaattagtggattt---------tgactagaa-cataatttggccttg----gaggctgaaagatgaattaagtgacctTA-AGAGTTT---TCATCATGTTGATAAGGAAAAATGTCCTCAACAAGGAATTAAGTCAGAGCTGTTTTCAAATCCT-----ACGTGGGTTTGGCCTCTCAGGCTTTGAGAAAC----AAATTCAGAAGTA----TAA----TCGATTTCATTTCTGTGATC-ATGTTCTTCTGGTCcagttggtctgatactttactctgc-acataaataaaatgggagctggttaaaggcataaattcttgggcaccacttctcagagatgttgattcagAGAGtgtataaattatctattgctgcacaaccagtgatcaaactcagggacatcgaatagttcctccttactgtttcgcagttctgtagtcaggagtggttctcgtgggttc---------ctgtgtg-ttttcca i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 1217346 4191 - 11655695 I a score=251792.000000 s hg38.chr5_GL383530v1_alt 18638 25 + 101241 ctccagctcttacaaggttgacatc s panTro5.chr5 20247447 25 + 181907262 ctccagctcttacaaggttgacatc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20264752 25 + 183735486 ctccagctcttacaaggttgacatc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4750591 25 - 13748885 ctccagctcttacaaggttgacatc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53785846 25 - 163208435 ctccagctcttacaaggttgacatc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87813586 25 - 180051392 ctctggctctcacaaggttgacatc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87917994 25 - 181584905 ctccggctctcacaaggttgacatc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1140864 25 - 8785636 ctccggctctcacaaggttgacatc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1609121 25 + 27333823 ctccggctctcacaaggttgacatc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1879221 25 - 91010382 ctccagctctcacaaggttgacatc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1990297 25 + 5179401 ctccgactctcacaaggttgacatc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7696039 25 - 21726897 ctccggctctcacaaggttgacatc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112516561 24 + 204313951 cttagg-tcttacaaggctgagatc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44962406 24 + 71252344 cttagg-tctgacaaggttgagatc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 326924 24 - 1393929 cttagg-tcttacaaggttgagatc i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1403253 24 - 15889662 cttagg-tcttacaaggttgagatc i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1284760 25 - 29863360 tggaggatctcacaagactgaaatc i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76441072 24 + 120421639 -tttatttctggctgggctgaagtc i mm10.chr13 C 0 I 716 s canFam3.chr3 14301503 25 + 91889043 ctttaggtatcacaaggttgaaatc i canFam3.chr3 C 0 C 0 e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I a score=79098.000000 s hg38.chr5_GL383530v1_alt 18663 7 + 101241 aaggcat s panTro5.chr5 20247472 7 + 181907262 aaggcgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20264777 7 + 183735486 aaggcat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4750616 7 - 13748885 aaggcat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53785871 7 - 163208435 aaggcat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87813611 7 - 180051392 aaggcat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87918019 7 - 181584905 aaggcat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1140889 7 - 8785636 aagacat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1609146 7 + 27333823 aaggcac i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1879246 7 - 91010382 aaggcac i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1990322 7 + 5179401 aaggcac i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7696064 7 - 21726897 aaggcac i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112516585 7 + 204313951 aaggcat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44962430 7 + 71252344 aacgcat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 326948 7 - 1393929 aaggcat i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1403277 7 - 15889662 aaggcat i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1284785 7 - 29863360 aaggtgt i otoGar3.GL873536 C 0 I 1472 s canFam3.chr3 14301528 7 + 91889043 aaggtgt i canFam3.chr3 C 0 C 0 e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I a score=154315.000000 s hg38.chr5_GL383530v1_alt 18670 15 + 101241 gagctgcactgacct s panTro5.chr5 20247479 15 + 181907262 gagctgcactgacct i panTro5.chr5 C 0 C 0 s panPan2.chr5 20264784 15 + 183735486 gagctgcactgACct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4750623 15 - 13748885 gagctgcactgacct i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53785878 15 - 163208435 gagctgtgctgACct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87813618 15 - 180051392 gagctgcactgACCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87918026 15 - 181584905 gagctgcactgACCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1140896 15 - 8785636 gagctgcactgACCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1609153 15 + 27333823 cagctgcactgACCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1879253 15 - 91010382 cagctgcactgacct i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1990329 15 + 5179401 cagctgcactgACCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7696071 15 - 21726897 cagctgcactgACCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112516592 15 + 204313951 gagttgcactggcct i calJac3.chr2 C 0 I 1008 s saiBol1.JH378106 44962437 15 + 71252344 gagttgcactggcct i saiBol1.JH378106 C 0 I 1025 s cebCap1.NW_016107830v1 326955 15 - 1393929 gagttgcactggcct i cebCap1.NW_016107830v1 C 0 I 1012 s aotNan1.NW_018506370v1 1403284 15 - 15889662 gagttgcactggcct i aotNan1.NW_018506370v1 C 0 I 1016 s canFam3.chr3 14301535 15 + 91889043 cagctgagttgggct i canFam3.chr3 C 0 C 0 e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e otoGar3.GL873536 1284792 1472 - 29863360 I a score=47590.000000 s hg38.chr5_GL383530v1_alt 18685 6 + 101241 agtagc s panTro5.chr5 20247494 6 + 181907262 agtagc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20264799 6 + 183735486 agtagc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4750638 6 - 13748885 agtagc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53785893 6 - 163208435 agtagc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87813633 6 - 180051392 AGTAGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87918041 6 - 181584905 AGTAGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1140911 6 - 8785636 AGTAGC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1609168 6 + 27333823 AGTAGC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1879268 6 - 91010382 AATAGC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1990344 6 + 5179401 AGTAGC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7696086 6 - 21726897 AGTAGC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112517615 6 + 204313951 agtggc i calJac3.chr2 I 1008 C 0 s saiBol1.JH378106 44963477 6 + 71252344 agtggt i saiBol1.JH378106 I 1025 C 0 s canFam3.chr3 14301550 6 + 91889043 cttagc i canFam3.chr3 C 0 I 4682 e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e otoGar3.GL873536 1284792 1472 - 29863360 I e aotNan1.NW_018506370v1 1403299 1016 - 15889662 I e cebCap1.NW_016107830v1 326970 1012 - 1393929 I a score=3145.000000 s hg38.chr5_GL383530v1_alt 18691 1 + 101241 a s panTro5.chr5 20247500 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 20264805 1 + 183735486 a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4750644 1 - 13748885 a i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53785899 1 - 163208435 a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87813639 1 - 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87918047 1 - 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1140917 1 - 8785636 A i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1609174 1 + 27333823 A i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1879274 1 - 91010382 A i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1990350 1 + 5179401 A i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7696092 1 - 21726897 A i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112517621 1 + 204313951 t i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44963483 1 + 71252344 t i saiBol1.JH378106 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e otoGar3.GL873536 1284792 1472 - 29863360 I e aotNan1.NW_018506370v1 1403299 1016 - 15889662 I e cebCap1.NW_016107830v1 326970 1012 - 1393929 I a score=1212345.000000 s hg38.chr5_GL383530v1_alt 18692 136 + 101241 tttttgtagaatcatcagattttccacaaagatgatt-------atgtcatctgtgaataaagacagttttactt--cttcc-ttttttggTGAATAAGCAATAGGTATTTATTAAATGAGCAGATGGAATAATTATCACAATGTG s panTro5.chr5 20247501 136 + 181907262 tttttgtagaatcatcagattttccacaaagatgatt-------atgtcatctgtgaataaagacagttttactt--cttcc-ttttttggTGAATAAGCAATAGGTATTTATTAAATGAGCAGATGGAATAATTATCACAATGTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20264806 136 + 183735486 tttttgtagaatcatcagattttccacaaagatgatt-------atgtcatctgtgaataaagacagttttactt--cttcc-ttTTTTGGTGAATAAGCAATAGGTATTTATTAAATGAGCAGATGGAATAATTATCACAATGTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4750645 143 - 13748885 tttttgtagaatcatcagattttccaacaagatgattttccaaaagatcatctgtgaataaagacagttttactt--cttcc-tttTTTGGTGAATAAGCAATAGGTATTTATTAAATGAGCAGATGGAATAATTATCACAATGTG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53785900 136 - 163208435 tttttgtagaatcatcagattttccacaaagatgatt-------atgtcatctgtgaataaagacagttttactt--cttcc-ttttttggtgaataAGCAATAGGTATTTATTAAATGAGCAGATGGAAGAATTATCACAATGTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87813640 127 - 180051392 Attttgt---------agattttccacaacaatgact-------atgtcatctgtgaatacaggcagttttactt--cttcc-ttTTTTGGTGAATAAGCAATAAGTATTTATTAAATGAGCAGATGAAAGAATTATCACAATGTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87918048 127 - 181584905 Attttgt---------agattttccacaacaatgact-------atgtcatctgtgaatacaggcagttttactt--cttcc-ttTTTTGGTGAATAAGCAATAAGTATTTATTAAATGAGCAGATGAAAGAATTATCACAATGTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1140918 127 - 8785636 Attttgt---------agattttccacaacaatgact-------atgtcatctgtgaatacaggcagttttactt--cttcc-ttTTTTGGTGAATAAGCAATAAGTATTTATTAAATGAGCAGATGAAAGAATTATCACAATGTG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1609175 127 + 27333823 Attttgt---------agattttccacaacaatgact-------atgtcatctgtgaatacagatagttttactt--cttcc-tttTTTGGTGAGTAAGCAATAAGTATTTATTAAATGAGCAGATGAAAGAATTATCACAATGTG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1879275 127 - 91010382 Attttgt---------agattttccacaacaatgact-------atgtcatctgtgaatacagacagttttactt--cttcc-ttTTTTGGTGAATAAGCAATAAGTATTTATTAAATGAGCAGATGAAAGAATTATCACAATGTG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1990351 127 + 5179401 Attttgt---------agattttccacaacaatgact-------atgtcatctgtgaatacagacagttttactt--cttcc-ttTTTTGGTGAATAAGCAATAAGTATTTATTAAATGAGCAGATGAAAGAATTATCACAATGTG i manLeu1.NW_012103732v1 C 0 M 1020 s colAng1.NW_012115488v1 7696093 127 - 21726897 Attttgt---------agattttccacaacaatgact-------atgtcatctgtgaatacagacagttttactt--cttcc-ttTTTTGGTGAATAAGCAATAAGTATTTATTAAATGAGCAGATGAAAGAATTATCACCATGTG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112517622 137 + 204313951 tttttgtagagttattggattttccacaaagatgatt-------atgtcatctgtgaataaagacagttttgctt--cttcctttTTTTGGTGAATAAACAATATGTATTTATTTAATGACAAGATGGAAGAATTATCACAATGTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44963484 137 + 71252344 tttttgtagagtcattggattttccacaaagatgatt-------atgtcatctgtgaataaagacagttttgctt--cttcctttTTTTGGTGAATAAGCGATAAGTATTTATTAAATGACAAGATGGAAGAATTATCACTATGTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 327982 137 - 1393929 tttttgtagaatcattggattttccacaaagatgatt-------atgtcttctgtgaataaagacagttttgttt--cttcctttTTTTGGTGAATAAGCAATAAGTATTTATTAAATGATAAGATGGAAGAATTATCACAATGTG i cebCap1.NW_016107830v1 I 1012 C 0 s aotNan1.NW_018506370v1 1404315 139 - 15889662 tttttgtagagtcattggattttccacaaagatgatt-------atgtcatctgtgaataaagacagttttgctttcttcctttTTTTTGGTGAATAAGCAATAAGTATTTATTAAATGACAAGATGGAAGAATTATCACAATGTG i aotNan1.NW_018506370v1 I 1016 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e otoGar3.GL873536 1284792 1472 - 29863360 I a score=1281832.000000 s hg38.chr5_GL383530v1_alt 18828 179 + 101241 ATACA---------------------GTTACATTTTCATTATTATTGCACAATACACTTTTTAAAAAAAAtttctaacttttattttaagttcaggcgtatacattcatgatgtgcaTTTTTCTGGAAGTTTAAGCCAGCATAGTAAGGAAAGAAAGA-----AAGAAAGTGTttctacttcttcctttttaatctagaggcctt s panTro5.chr5 20247637 179 + 181907262 ATACA---------------------GTTACATTTTCATTATTATTGCAAAATACACTTTTTTAAAAAAAtttctaacttttattttaagttcaggcgtatacattcatgatgtgcaTTTTTCTGGAAGTTTAAGCCAGCATAGTAAGGAAAGAAAGA-----Aaggaagagtttctacttcttcctttttaatctagaggcctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20264942 179 + 183735486 ATACA---------------------GTTACATTTTCATTATTATTGCAAAATACACTTTTTAAAAAAAAtttctaacttttattttaagttcaggcgtatacattcatgatgtgcaTTTTTCTGGAAGTTTAAGCCAGCATAGTAAGGAAAGAAAGA-----AAGAAAGTGTttctacttcttcctttttaatctagaggcctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4750788 174 - 13748885 GTACA---------------------GTTACATTTTCATTATTATTGCACAATATACTTTTTAAAAAAAATTTCTAAC-----TTTTAAGTTCAGGCGTATACATTCATGATGTGCATTTTTCTGGAAGTTTAAGCCAGCATAGTAAGGAAAGAAAGA-----AAGAAAGTGTttctacttcttcctttttaatctagaggcctt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53786036 174 - 163208435 ATACA---------------------GTTACATTTTCATTATTATTGCACAATATAC-TTTAAAAAAAAATTTCT----TTTATTTTAAGTTCAGGCATATACATTCATAATGTGCATTTTTCTGGAAGTTTAAGCCAGCATAGTAAGGAAAGAAAGA-----AGAAAAGTGTTTCTACTTCTTCCTTTTTAATCTAGAGGCCTT i nomLeu3.chr2 C 0 M 100 s rheMac8.chr6 87813767 167 - 180051392 ATACA---------------------GTTACACTTTCATTATTATTGCACAATACACTTTT---AAAAAATTTCTAAC-----TTTTAAGTTTAGGGGTACACATTCATGATGTGCATTTTTCTGGAAGTTTAAGCCAGCGTGGTAAGGAAAGAAAGA---------AAGTGTttctacttcttcctttttgaactagaggcctt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87918175 167 - 181584905 ATACA---------------------GTTACACTTTCATTATTATTGCACAATACACTTTT---AAAAAATTTCTAAC-----TTTTAAGTTTAGGGGTACACATTCATGATGTGCATTTTTCTGGAAGTTTAAGCCAGCGTGGTAAGGAAAGAAAGA---------AAGTGTttctacttcttcctttttaaactagaggcctt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1141045 167 - 8785636 ATACA---------------------GTTACACTTTCATTATTATTGCACAATACACTTTT---AAAAAATTTCTAAC-----TTTTAAGTTTAGGGGTACACATTCATGATGTGCATTTTTCTGGAAGTTTAAGCCAGCGTGGTAAGGAAAGAAAGA---------AAGTGTttctacttcttcctttttaaactagaggcctt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1609302 167 + 27333823 ATACA---------------------GTTACACTTTCATTATTATTGCACAATACACTTTA---AAAAAATTTCTAAC-----TTTTAAGTTTAGGGGTACACATTCATGATGTGCATTTTTCTGGAAGTTTAAGCCAGCGTGGTAAGGAAAGAAaga---------aagagtttctacttcttcctttttaaactagaggcctt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1879402 167 - 91010382 ATATA---------------------GTTACACTTTCATTATTATTGCACAATACACTTTT---AAAAAATTTCTAAC-----TTTTAAGTTTAGGGGTACACATTCATGATGTGCATTTTTCTGGAAGTTTAAGCCAGCGTGGTAAGGAAAGAAAGA---------AAGTGTttctacttcttcctttttaaactagaggcctt i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7696220 167 - 21726897 ATACA---------------------GTTACACTTTCATTATTATTGCACAATACACTTTT---AAAAAATTTCTAAC-----TTTTAAGTTTAGGGGTACACATTCATGATGTGTATTTTTCTGGAAGTTTAAGCCAGCGTAGTAAGAAAAGAAAGA---------AAGTGTttctacttcttcctttttaaactagaagcctt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112517759 171 + 204313951 ATACA---------------------GTTACAATTTCATTATTATTGCACAATACACT------TAAAAGTGTCTAAC-----ttttaagttcaagggtacacttgcatgatgtgcatttttctggaagtttaagccagcatagtaaggcaagaaaaaaaa--aataaaaggtttctacttcttcttttctaatctagaggcctt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44963621 172 + 71252344 ATAGA---------------------GTTACAATTTCATTATTATTGCACAATACATT------TAAAA-tttctaac-----ttttaagttcaagggtacacctgcatgatgtgcaTTTTTCTGGAAATTTAAGCCAGCATAGTAAGACAAGAAAAAACaataataaaaggtttctacttctttctttccattctagaggcctt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 328119 172 - 1393929 ATACA---------------------GTTACAATTTCATTATTATTGCACAATACACT------TAAAAATGTCTAAC-----TTTTAAGTTCAAGGGTACACCTGTATGATGTGCATTTTTCTAGAAGTTTAAGCCAGCATACTAAGGCAAGAAAAAAAAA-AATAAAAGGTttctagttcttcctttccattctagaggcctt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1404454 192 - 15889662 ATACAGTTACAATTTCATTATTATTGGTTACAATTTCATTATTATTGCACAATACACT------TAAAAATGTCTAAC-----ttttaagttcaagggtacatctgcatgatgtgcatttttctggaagtttaagccagcatagtaaagcaagaaaaaata--aataaaaggtttctatttcttcctttccaatccagaggcctt i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e otoGar3.GL873536 1284792 1472 - 29863360 I e manLeu1.NW_012103732v1 1990478 1020 + 5179401 M a score=383962.000000 s hg38.chr5_GL383530v1_alt 19007 52 + 101241 ttatttctttttctttccttactgtgctggcttaaacttccag-aaaaatatt s panTro5.chr5 20247816 52 + 181907262 ttatttctttttctttccttactgtgctggcttaaacttccag-aaaaatatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20265121 52 + 183735486 ttatttctttttctttccttactgtgctggcttaaacttccag-aaaaatatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4750962 53 - 13748885 ttatttctttttctttccttactgtgctggcttaaacttccagaaaaaatatt i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87813934 52 - 180051392 ttatttatttttctttccttattctgctggcttaaacttccag-aaaaatact i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87918342 52 - 181584905 ttatttatttttctttccttattctgctggcttaaacttccag-aaaaatact i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1141212 52 - 8785636 ttatttatttttctttccttattctgctggcttaaacttccag-aaaaatact i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1609469 52 + 27333823 ttatttatttttctttccttattctgctggcttaaacttccag-aaaaatact i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1879569 52 - 91010382 ttatttgtttttctttccttatcctgctggcttaaacttccag-aaaaatact i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7696387 52 - 21726897 ttatttatttttctttccttactcttctggcttaaacttccag-aaaaatact i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112517930 52 + 204313951 ttatttcttttgctttccttactgtgctggtttaaacttccag-aaaaatact i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44963793 52 + 71252344 ttatttcttttgctttccttactgtgctggtttaaacttccag-aaaaatact i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 328291 52 - 1393929 ttatttcttttgctttccttactgtgctggtttaaacttccag-aaaaatact i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1404646 52 - 15889662 ttatttcttctgctttccttactgtgctggtttaaacttccag-aaaaatacc i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e otoGar3.GL873536 1284792 1472 - 29863360 I e manLeu1.NW_012103732v1 1990478 1020 + 5179401 M e nomLeu3.chr2 53786210 100 - 163208435 M a score=270797.000000 s hg38.chr5_GL383530v1_alt 19059 31 + 101241 gaatagaagtgataagaatgcacgtcctttt s panTro5.chr5 20247868 31 + 181907262 gaatagaagtgataagaatgcacgtcctttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20265173 31 + 183735486 gaatagaagtgataagaatgcacgtcctttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4751015 31 - 13748885 gaatagaagtgataagaatgcacgtcctttt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53786310 31 - 163208435 gaatagaagtcataagaatgcacatcctttt i nomLeu3.chr2 M 100 C 0 s rheMac8.chr6 87813986 31 - 180051392 gaatagaagtggtaagaatgcacatcctttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87918394 31 - 181584905 gaatagaagtgataagaatgcacatcctttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1141264 31 - 8785636 gaatagaagtgataagaatgcacatcctttt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1609521 31 + 27333823 gaatagaagtgataagaatgcacatcctttt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1879621 31 - 91010382 gaatagaagtgataagaatacacatcctttt i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7696439 31 - 21726897 caatagaagtgataagaatgcgcatcctttt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112517982 31 + 204313951 gaatagaagcaataagaatgaacatcctttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44963845 31 + 71252344 gaatagaagtgataggaatgaacatcctttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 328343 31 - 1393929 gagtagaagtgatgagaatgaacatcctttt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1404698 31 - 15889662 gaatagaagtgataagaatgaacatcctttt i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e otoGar3.GL873536 1284792 1472 - 29863360 I e manLeu1.NW_012103732v1 1990478 1020 + 5179401 M a score=3150537.000000 s hg38.chr5_GL383530v1_alt 19090 380 + 101241 c-ttttgctaatcttaggaaaaa-------agcatttagtctctcttcattatgatgttagctgctggtttttataatgtcttttattaaattgagggagtttctttttattatttgtttggtgagagtttttatcaggaataaatgctga-ttttttgtcaagtgctttttctgcatctattgaaattattatgtggattttatttttgtgtttgttgatatagtgaattacattgatttttgaaattaatgttaaatgaacctggcatttctgaggaaaacactgcctgataataatattaattttatatattgtttatatattgctaa--aattttgttttaaattttgaatctatgctcatgagctatattggtctatagttttctt s panTro5.chr5 20247899 380 + 181907262 c-ttttgctaatcttaggaaaaa-------agcatttagtctctcttcattatgatgttagctgctggtttttataatgtcttttattaaattgagggagtttctttttattatttgtttggtgagagtttttatcaggaataaatgctga-ttttttgtcaagtgctttttctgcatctattgaaattattatgtggattttatttttgtgtttgttgatatagtgaattacattgatttttgaaattaatgttaaatcaaccttgcatttctgaggaaaacactgcctgataataatattaattttatatattgtttatatgttgctaa--aattttgttttaaattttgaatctatgctcatgagctatattggtctatagttttctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20265204 380 + 183735486 c-ttttgctaatcttaggaaaaa-------agcatttagtctctcttcattatgatgttagctgctggtttttataatgtcttttattaaattgagggagtttctttttattatttgtttggtgagagtttttatcaggaataaatgctga-ttttttgtcaagtgctttttctgcatctattgaaattattatgtggattttatttttgtgtttgttgatatagtgaattacattgatttttgaaattaatgttaaatcaaccttgcatttctgaggaaaacactgcctgataataatattaattttatatattgtttatatgttgctaa--aattttgttttaaattttgaatctatgctcatgagctatattggtctatagttttctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4751046 376 - 13748885 c-ttttgctaatcttaggaaaaa-------agcatttagtctctcttcattatgatgttagctgctggtttttataatgtcttttattaaattgagggagtttctttttattatttgtttggtgagagtttttatcaggaataactgctga-ttttttgtcaagtgctttttctgcatctattgaaattattatgtggattttgtttttg----tgttgatatagtgaattacattgatttttgaaattaatgttaaatcaaccttgcatttctgaggaaaacactgcctgataataatattaattttatatattgtttatatattgctaa--aattttgttttaaattttgaatctatgctcatgagctatattggtctatagttttctt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53786341 381 - 163208435 ctttttgctaatcttaggaaaaa-------agcatttagtttctcttcattatgatgttagctgctggtttttataatgtcttttattaaattgagggagtttctttttattatttctttggtgagagtttttatcaggaataaatgccga-ttttttgtcaagtgctttttctgcatctattgaaattattatgtggattttatttttgtgtttgttaatatagtgaattacattgatttttgaaattaatgttaaatcaaccttgcatttctgaggaaaacactgcctgataataatattaattttatatattgtttatatattgctaa--aattttgttttaaattttgaatctatgctcatgagctatattggtctatagttttctt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87814017 377 - 180051392 ctttttgctaatcttaggaaaaa-------agcatttagtttttcttcattatcatattagctgctggtttttgtattgccttttattaaattgaggtagtttctttttattatttctttggtgagagttttta-caggaataaatgctgatttttttgtcaagtgctttttctgcatctattgaaattattatgtggattttatttttgagttcgttaatatagtgaattacattgatttttgaaattaatgttaaatcaaccttgcatttctgagggaaacactgcctgat----atattagttttatatattgtttatatattgctaa--aattttgttttaaattttgaatatatgctcatgagagatattggtctatagttttctt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87918425 378 - 181584905 ctttttgctaatcttaggaaaaa-------agcatttagtttttcttcattatcatattagctgctggtttttgtattgccttttattaaattgagggagtttctttttattatttctttggtgagagtttttatcaggaataaatgctgatttttttgtcaagtgctttttctgcatctattgaaattattatgtggattttatttttgagttcgttaatatagtgaattacattgatttttgaaattaatgttaaatcaaccttgcatttctgagggaaacactgcctgat----atattagttttatatattgtttatatattgctaa--aattttgttttaaattttgaatctatgctcatgagagatattggtctatagttttctt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1141295 378 - 8785636 ctttttgctaatcttaggaaaaa-------agcatttagtttttcttcattatcatattagctgctggtttttgtattgccttttattaaattgagggagtttctttttattatttctttggtgagagtttttatcaggaataaatgctgatttttttgtcaagtgctttttctgcatctattgaaattattatgtggattttatttttgagttcattaatatagtgaattacattgatttttgaaattaatgttaaatcaaccttgcatttctgagggaaacactgcctgat----atattagttttatatattgtttatatattgctaa--aattttgttttaaattttgaatctatgctcatgagagatattggtctatagttttctt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1609552 378 + 27333823 ctttttgctaatcttaggaaaaa-------agcatttagtttttcttcattatgatattagctgctggtttttatattgccttttattaaattgagggagtttctttttattatttctttggtgagagtttttatcaggaataaatgctgatttttttgtcaagtgctttttctgcatctattgaaattattacgtggattttatttttgagttcgttaatatagtgaattacattgatttttgaaattaatgttaaatcaaccttgcatttctgagggaaacactgcctgat----atattagttttatatattgtttatatattgctaa--aattttgttttaaattttgaatctatgctcatgagagatattggcctatagttttctt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1879652 375 - 91010382 ctttttgctaatcttaggaaaaa-------agcatttagtttttcttcattatgatattagctgctggtttttatattgccttttattaaattgagggagtttctttttattatttctttggtgagagtttttatcaggaataaatgctaatttttttgtcaagtgccttttctgcatctattgaaattat---gtggattttgtttttgagtttgttaatatagtgaattacattgatttttgaaattaatgttaaagcaaccttgcatttctgagggaaacactgcctgat----atattagttttaaatattgtttatatattgctaa--aattttgttttaaattttgaatctatgctcatgagagatattggtctatagttttctt i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7696470 378 - 21726897 ctttttgctaatcttagggaaaa-------agcatttagtttttcttcattatgatgttagctgctggtttttatattgccctttattaaattgagggagtttctttgtattatttctttggtgagagtttttatcaggaataaatgctgacttttttgtcaagtgctttttctgcatctattgaaattattatgtggattttatttttgggtttgttaatatagtgaattacattgatttttgaaattaatgttaaatcaaccttgcgtttctgagggaaacactgcctgat----atattaattttttatattgtttatatattgctaa--aattttgttttaaattttgaatctatgctcatgagagatattggtctatagttttctt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112518013 334 + 204313951 ctttttgctaatctgaagaaaaa-------accatttagtctttcttcattgtgatgttagctgttggtttttataatgccttttattaaattgagagagtttctttttatta----tttggtgagagtttttatcaggaataaatgttga-atttttgtcaagtgg---------------------------------------tttgagtttgttagtgtagtgaattacattgatttttgaaattaatgttaaatcaaccttgcatttctgaggaaaacattggctgat----atattaattttatatattgtttatatattgctaa--aatcttgttttaaattttgaatctatgctcgtgagagatactggtctgtagttttctt i calJac3.chr2 C 0 I 3 s saiBol1.JH378106 44963876 318 + 71252344 ctttttgctaatctgaagaaaaa-------agcatttagtctttcttcattgtgatgttagctgttgggttttataatgccttttattaaattgaaggggtttct-----tta----tttggtgagagttttt-----------atgttga-atttttgccaagtgc---------------------------------------tttgagtttgttaatgtagtgaattatattgatttttgaaattaatgttaaatcaaccttgcctttctgaggaaaacagtggctgat----atattaattttatatattgtttatatattgctaa--aattttgttttaaattttgaatctatgctcgtgagagatactggtctgtagttttctt i saiBol1.JH378106 C 0 I 3 s cebCap1.NW_016107830v1 328374 334 - 1393929 cgttttgctaatctgaagaaaaa-------agcatttagtctttctttgttgtgatgttagctgttggtttttataatgccttttattaaattgagggagtttctttttgtta----tttggtgagagtttctatcaggaataaatgtaga-atttttgtcaagtgc---------------------------------------tttgagtttgttaatgtagtgaattacattgatttttgaaattaatattaaatcaaccttgcatttctgaggaaaacactaggcgat----atattaattttatatattgtttatatattgctaa--aattttgttttaaattttgaatctatgctcgtgagagatattggcctgtagttttctt i cebCap1.NW_016107830v1 C 0 I 15 s aotNan1.NW_018506370v1 1404729 334 - 15889662 ctttttgctaatttgaagaaaaa-------agcatttagtctttcttcattgtgatgttagctgttggttgttataatgccttttattaaattgagggagtttctttttatta----tttggtgagagtttttatcaggaataaatgttga-atttttgtcaagtgc---------------------------------------tttgagtttgttaatgtagtgaattacgttgatttttgaaattaatgttaaatcaaccttgcatttctgaggagaacactggctgat----atattaattttatatgttgtttatatattgctaa--aattttattttaaattttgaatctatgcttgtgagagatactggtctgtagttttctt i aotNan1.NW_018506370v1 C 0 I 3 s otoGar3.GL873536 1286264 365 - 29863360 -CTTCATCTACTCGTAAGGGAAATTTCAACagaatttagtctttcaccattatgac-tcagctgt--gtttctgtgataccctttgttaacttggaagagttgctttttaattttagtttagt-----cttttatctggaataaatgctga-atttttgtcaaatgcgttttctgtattgattgacattac---atgcattt----tctgagtctgttactataatgaattacagttattttttaa---aatgttaattcaa--ttgcatttctgaggaaaatcccacttgat----attgaatttttgtatattatttgatttttgtatgccaattttaaaaaacattttgggtgtgtgctcgtgggcgatattgattagtagctttctt i otoGar3.GL873536 I 1472 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e manLeu1.NW_012103732v1 1990478 1020 + 5179401 M a score=64286.000000 s hg38.chr5_GL383530v1_alt 19470 16 + 101241 ataatgtctttgttta s panTro5.chr5 20248279 16 + 181907262 ataatgtctttgttta i panTro5.chr5 C 0 C 0 s panPan2.chr5 20265584 16 + 183735486 ataatgtctttgttta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4751422 16 - 13748885 ataatgtctttgttta i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53786722 16 - 163208435 ataatgtctttgttta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87814394 16 - 180051392 ataatgtgtttgttta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87918803 16 - 181584905 ataatgtgtttgttta i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1141673 16 - 8785636 ataatgtgtttgttta i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1609930 16 + 27333823 ataatgtgtttgttta i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1880027 16 - 91010382 ataatatgtttgttta i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7696848 12 - 21726897 ataatg----tgttta i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112518350 11 + 204313951 attata-cctta---- i calJac3.chr2 I 3 C 0 s saiBol1.JH378106 44964197 12 + 71252344 attgtacccttg---- i saiBol1.JH378106 I 3 C 0 s aotNan1.NW_018506370v1 1405066 12 - 15889662 attatacccttg---- i aotNan1.NW_018506370v1 I 3 C 0 s otoGar3.GL873536 1286629 16 - 29863360 gtaatgtcctggttta i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e cebCap1.NW_016107830v1 328708 15 - 1393929 I e manLeu1.NW_012103732v1 1990478 1020 + 5179401 M a score=4193238.000000 s hg38.chr5_GL383530v1_alt 19486 461 + 101241 ---tcagggaaataatggcttcatagaattagttgggatgtatttcttcttcctcaaattttttggaagagtttgtgtagaaataatattttt-catc-tttaatg-ttggtagagtttactagtgaagctatttgggccttgaatttttttgtgtgggacagtttttttgcaaattcaatttatttgctagctataaggctattcagttt--atccatttatttttgaagtcagctttgggagtttgcatcttttaaggaatttgtctatatcttctaagttgtcaattttgattgagaatgtcatttttattccattattctccttttaatatttatagaat--------gtgtaataatgtcACGGATAAgttttaaatatctatgtttattcatgttatcacagaagtagacatgagg-tttcaggagtaggaatagactattattactcacagcaataactgcgttggttctc s panTro5.chr5 20248295 461 + 181907262 ---tcagggaaataatggcttcatagaattagttgggatgtatttcttcttcctcaaattttttggaagagtttgtgtagaaataatattttt-catc-tttaatg-ttggtagagtttactagtgaagctatttgggccttgaatttttttgtgtgggacagtttttttgcaaattcaatttatttgctagctataaggctattcagttt--atccatttatttttgaagtcagctttgggagtttgcatcttttaaggaatttgtctatatcttctaagttgtcaattttgattgagaatgtcatttgtattccattattctccttttaatatttatagaat--------gtgtaataatgtcACGGATAAgttttaaatatctatgtttattcatgttatcacagaagtagacatgagg-tttcaggagtaggaatagactattattactcacagcaataactgcgtcggttctc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20265600 461 + 183735486 ---tcagggaaataatggcttcatagaattagttgggatgtatttcttcttcctcaaattttttggaagagtttgtgtagaaataatattttt-catc-tttaatg-ttggtagagtttactagtgaagctatttgggccttgaatttttttgtgtgggacagtttttttgcaaattcaatttatttgctagctataaggctattcagttt--atccatttatttttgaagtcagctttgggagtttgcatcttttaaggaatttgtctatatcttctaagttgtcaattttgattgagaatgtcatttgtattccattattctccttttaatatttatagaat--------gtgtaataatgtcACGGATAAgttttaaatatctatgtttattcatgttatcacagaagtagacatgagg-tttcaggagtaggaatagactattattactcacagcaataactgcgtcggttctc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4751438 462 - 13748885 ---tcagggaaataatggcttcatagaattagttgggatgtatttcttcttcctcaaattttttggaagagtttgtgtagaaataatattttt-catcttttaatg-ttgatagagtttactagtgaagctatttgggctttgaatttttttgtgtgggacagtttttttgcaaattcaatttatttgctagctataaggctattcagttt--atccatttgtttttgaagtcagctttgggagttttcatcttttaaggaatttgtctatatcttctaagttgtcaattttgattgagaatgtcatttgtattccattattctccttttaatatttatagaat--------gtgtaataatgtcACtgataagttttaaatatctatgtttattcatgttatcacagaagtagacatgagg-tttcaggagtaggaatagactgttattactcacagcaataactgcgttggttctc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53786738 461 - 163208435 ---tcagggaactaatggcttcatagaattagttgggatgtatttcttcctcctcaaattttttggaagagtttgtgtagaaataatattttt-catc-tttaatg-ttggtagagtttactagtgaagctgtttaggccttgaatttttttgtgtgggacagtttttttgcaaattcaatttatttactagctataaggctattcagttt--atctatttattgttgaagtcagctttgggagtttgcatcttttaaggaatttgtctatatcttctaagttgtcgattttgattgagaatgtcatttgtattccattattctccttttaatatttatagaat--------gtgtaataatgtcACtgctaagttttaaatatctatgtttatttatgttatcacagaagtagacctgagg-tttcaggagtaggcatagactattattactcacagcaataactccgttggttctc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87814410 460 - 180051392 ---tcagggaaataatggcttcatagaattagttgggatgtatttcttcctcctcaaattttttggaagaggttgtgtagaaataatatattt-cacg-tttaatc-ttggtagagtttactaatgaagctatttgggccttgaatttttttgtgtgggacag-ttttttgcaaattcaatttatttactagctataaggctattcaggtt--atctatttgtttttgaagtcagttttgggagtttgcatcttttaaggaatttgtctatatcttctaagttgtcaatttcgattgagaatgtcatttgtattcccttattatccttttaatatttatagcat--------gtataataatgtcACtgataagttttaaatgtctatgtttattcatgttattacagaagtaggcatgagg-tttcaggagtaggaatagaatattattactcacagcaataactgcattggttcct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87918819 460 - 181584905 ---tcagggaaataatggcttcatagaattagttgggatgtatttcttcctcctcaaattttttggaagaggttgtgtagaaataatatattt-cacg-tttaatc-ttggtagagtttactaatgaagctatttgggccttgaatttttttgtgtgggacag-ttttttgcaaattcaatttatttactagctataaggctattcaggtt--atctatttgtttttgaagtcagtttcgggagtttgcatcttttaaggaatttgtctatatcttctaagttgtcaatttcgattgagaatgtcatttgtattcccttattatccttttaatatttatagcat--------gtataataatgtcACTGATAAGTTTTAAATGTCTATGTTTATTCATGTTATTACAGAAGTAGGcatgagg-tttcaggagtaggaatagaatattattactcacagcaataactgcattggttcct i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1141689 460 - 8785636 ---tcagggaaataatggcttcatagaattagttgggatgtatttcttcctcctcaaattttttggaagaggttgtgtagaaataatatattt-cacg-tttaatc-ttggtagagtttactaatgaagctatttgggccttgaatttttttgtgtgggacag-ttttttgcaaattcaatttatttactagctataaggctattcaggtt--atctatttgtttttgaagtcagttttgggagtttgcatcttttaaggaatttgtctatatcttctaagttgtcaatttcgattgagaatgtcatttgtattcccttattatccttttaatatttatagcat--------gtataataatgtcACTGATAAGTTTTAAATGTCTATGTTTATTCATGTTATTACAGAAGTAGGcatgagg-tttcatgagtaggaatagaatattattactcacagcaataactgcattggttcct i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1609946 460 + 27333823 ---tcagggaaataatggcttcatagaattagttgggatgtatttcttcctcctcaaattttttggaagaggttgtgtagaaataatatattt-catg-tttaatg-ttggtagagtttactaatgaaactatttgggccttgaatttttttgtgtgggacag-ttttttgcaaattcaatttatttactagctataaggctattcaggtt--atctatttgtttttgaagtcagttttgggagtttgcatcttttaaggaatttgtctatatcttctaagttgtcaatttcgattgagaatgtcatttgtattcccttattatccttttaatatttatagaat--------gtataataatgtcACTGATAAGTTTTAAATGTCTATGTTTATTCATGTTATTACAGAAGTAGCcatgagg-tttcaggagtaggaatagaatattattactcacagcaataactgcattggttcct i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1880043 459 - 91010382 ---tcagggaaataatggcttcatagaattagttgggatgtatttcttcctcctcaaattttttggaagaggttgtgtagaaataatatattt-cacg-tttaatg-ttggtagagtttactaatgaagctagttgggccttgaa-ttttttgtgtgggacag-ttttttgcaaattcaatttatttactagctataaggctattcaggtt--atctatttgtttttgtagtcagttttgggagttggcgtcttttaaggaatttgtctatatcttctaagttgtcaatttcaattgagaatgtcatttgtattcccttattatccttttaatatttatagcat--------gtataataatgtcATTGATAAGTTTTAAATGTCTATGTTTATTCATGTTATTACACAAGTAGGcatgagg-tttcaggagtaggaatagaatattattactcacagcagtaactgcattggttcct i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7696860 461 - 21726897 ---tcagggaaataatggcttcatagaattagttgggatgtatttcttcctcctcaaattttttggaagaggttgtgtagaaataatatattt-cacg-tttaatgttttgtagagtttactaatgaagctatttgggccttgagtttttttgtgtgggacag-ttttttgcaaattcaatttatttactagctgtaaggctattcaggtt--atctatttatttttgaagtcagttttgggagtttgcatcttttaaggaatttgtctatatcttctaagttgtcaatttcgattgagaatgtcatttgtattcccttattatccttttaatatttatagaat--------gtataataatgtcACtgataagttttaaatatctatgtttattcatgttattacagaagtagacatgagg-tttcaggagtaggaatagaatattattactcacagcaataactgcattggttcct i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112518361 454 + 204313951 ---tcagggaaataatgcctacacagaa-tagttggaaaatatttcttccttctcaaagtttttggaagaatgtgtgtaggaatcatgttttt-gatc-tttactg-ttgatagagtttactggtgacgctgtttgggccttgaatttttttgtgtggaagag-tttttggcaaattcaatttatttactagctataaggctattcaggtt--atttatttctctttgaagtcagttttgggagtttgcatcttttaaggaatttatctgtatcttctaagtcatcaattttgattgagaatgtcattggtattccc-tattactctattaatatttatagaat--------atgtaataatgtcAGtgataagttttaaatatctatgtttattcatgttattgcagaa-tagacatgagg-tttcaggagaagaaatagac---tattactctcagcaataactgcattgattctc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44964209 452 + 71252344 ---tcagggaaataatggctacacagaa-tagttggaaaatatttcttccttctcaaagtttttggaagagtttgtgtagaaatcatattttt-tatc-tttaatg-ttggtagagtttactggtgaagctgtttgggccttgaatttttttgtgtggaagag-tttttggcaaattcaatttatttactagctataaggctattcaggtt--atttatttctctttgaaatcagttttaggagtttgcatcttttaaggaatt----tgtatcttctaagttgtcaattttgattgagaatgtcattggtattccc-tattactctattaatatttatagaat--------atgtaataatgtcAAtgataagttttaaatatctatgtttattcatgttattgcacaagtagacatgaggttttcaggagtagaaatagac---tattactctcagcaataactgcattgattctc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 328723 455 - 1393929 ---tcagggaaataatggctacacagaa-tagttggaaaatatttcttccttctcaaaatttttggaagagtttgtgtagaaatcatattgtt-catc-tttaatg-ttggtagagtttactggtgaagctgtttgggccttgaatttttttgtgtggaagag-tttttggcaaattcaatttatttactagctataaggctattcaggtt--atttatttctctttgaagtcagttttgggagtttgcatcttttaaggaatttgtctgtatcttctaaattgtcaattttgattgcgaatgtcattggtattccc-tattactctattaatatttatagaat--------atgtaataatgtcAGTGATAAGTTTTAAATATCTATGTTTATTCATGTTATTGCAGAAGTGGACATTAGT-TTTCAGGAGTAGAAATAGAC---TATTACTCTCAGCAATAACTGCATTGATTCTC i cebCap1.NW_016107830v1 I 15 C 0 s aotNan1.NW_018506370v1 1405078 455 - 15889662 ---tcagggaaataatggctacacagaa-tagttggaaaatatttcttctttctcaaagtttttggaagagtttgtgtagaaatcatatattt-catc-tttaatg-gtggtagagtttactggtgaagctgtttgggccttgaatttttttgtgtagaagag-tttttggcaaattcaatttgtttactagctataaggctattcaggtt--atttatttctctttgaagtcagttttgggagtttgcatcttttaaggaatttgtttgtatcttctaagttgtcaattttgattgagaatgtcattggtattccc-tactactctattaatatttatagaat--------atgtaataatgccAGtgataagttttaaatatctatgtttattcatgttattgcagaaatagacatgagg-tttcaggagtaggaatagac---tattactctcagcaataactgcattgattctc i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1286645 471 - 29863360 ttagcagggaagtattgggtgcatagaatttgttgggaactatttcgtcctc--aattttttttggaagagtttgtggagaattcacattattataac-tttattatttgataaagttcacttatgaagctatctgggttttta--tctattttgtgagatgt-gttttgacacattcattttatttactagttataggactatttaggttacatgtatttatatcttgagttagctttagtagtttgcatattttaaagaatttgtctattttttctaagttgataattttgattgaaattgtcatttatattccctcattatcattttaataattgcagaattattaataatgtAATAATGTCACtgctaaattttaaatatctatgtttattcatattatcccaaaagtagacaggagg-tttctggagcagtgataaactattattagttacAGCAATAACTGCATTGATTCCC i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e manLeu1.NW_012103732v1 1990478 1020 + 5179401 M a score=4767463.000000 s hg38.chr5_GL383530v1_alt 19947 459 + 101241 gtttcctcag----tctttccctcttcttggaggatgagagccagaagtcacccaacttgtactggtatctgaactatataggtgaggaaggataaaaattcgaatctagggatttatgtaaatcttgactcttctactcct------------gaaagacagaa-att-taagcttctcaatgtaaacaaattcaccctgggaggaaagggaaagattactgggttattaccctttggaatataaagaaatatctccaggtggaagataagtctttgtgtttacaacctctgaaatatctctatggct-----------ctgtgtctcagccctctttgaaatgtaGGCACATGCC-TTTGAAGAGGTAAATCTTTCTGGATGGTCTCTCGTTATTGAATCACCCTTTAACTCCCAAGATTTGTTTGTTGACAAaagtttcaagtgtatttgctcagaaaaccctaac--tgcaaaaatataaaaatatt s panTro5.chr5 20248756 459 + 181907262 gtttcctcaa----tctttctctcttcttggaggatgagagccagaagtcacccaacttgtactggtatctgaactatataggtgaggaaggataaaaattcgaatctagggatttatgtaaatcttgactcttctactcct------------gaaagacagaa-att-taagcttctcaatgtaaacaaattcaccctgggaggaaagggaaagattactgggttattaccctttggaatataaagaaatatctccaggtggaagataagtctttgtgtttacaacctctgaaatatctctatggct-----------ctgtgtctcagccctctttgaaatgtagacacAAGCC-TTTGAAGAGGTAAATCTTTCTGGATGGTCTCTCGTTATTGAATCACCCTTTAACTCCCAAGATTTGTTTGTTGACAAaagtttcaagtgtatttgctcagaaaaccctaac--tgcaaaaatataaaaatatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20266061 459 + 183735486 gtttcctcaa----tctttctctcttcttggaggatgagagccagaagtcacccaacttgtactggtatctgaactatataggtgaggaaggataaaaattcgaatctagggatttatgtaaatcttgactcttctactcct------------gaaagacagaa-att-taagcttctcaatgtaaacaaattcaccctgggaggaaagggaaagattactgggttattaccctttggaatataaagaaatatctccaggtggaagataagtctttgtgtttacaacctctgaaatatctctatggct-----------ctgtgtctcagccctctttgaaatgtagacacAAGCC-TTTGAAGAGGTAAATCTTTCTGGATGGTCTCTCGTTATTGAATCACCCTTTAACTCCCAAGATTTGTTTGTTGACAAaagtttcaagtgtatttgctcagaaaaccctaac--tgcaaaaatataaaaatatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4751900 459 - 13748885 gtttcctcaa----tctttccctcttcttggaggatgagagccagaagtcacccaacttctactggtatctgaactatataggtgaggaaggataaaaattcgaatctagggatttatgtaaatcttgactcttctactcct------------gaaagacagaa-att-taagcttctcaatgtaaacaaattctccctgggaggaaagggaaagattactgggttattaccctttggaatataaagaaatatctccaggaggaagataagtctttgtgtttacaagctctgaaatatctctatggct-----------ctgtgtctcagccctctttgaaatgtagacacATGCC-TTTGAAGAGGTAAATCTTTCTGGATGGTCTCTCGTTATTGAATCACCCTTTAACTGCCAAGATTTGTTTGTTGACAAaagtttcaaatgtatttgctcagaaaaccctaac--tgcaaaaatataaaaatatt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53787199 457 - 163208435 gtttcctcaa----tctttccctcttcttggagggtgagagccagaagtcacccaacttgtactggtatctgaac--tataggtgaggaaggataaaaatttgaatctgggggtttatgtaaatgttgactcttctactcct------------gaaagagagaa-att-taagcttctcaatgtaaacaaattcaccctgagaggaaagggaaagattactgggttattaccctttggaatataaagaaatatctccaggaggaagataagtctttgtgtttacaacctctgaagtatctctatggct-----------ctgtgtctcagccctctttgaaatgtagacacATACC-TTTGAAGAGGTAAATCTTTCTGGATGGTCTCTCGTTATTGAAACACCCTTTAACTGCCAAGATTTGTTTGTTGACAAAAGTTTCAAATGTATTTGCTCAGAAAACCCTACC--TGCAAAAATATAAAAATATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87814870 457 - 180051392 gtttcctcaa----tcgttccctcttcttggaggatgagagccagaagtcacccaacttgtactggtatctgaac--tacaggtgaggaaagataaaaattcgaatctagggatttatgtaaatcttgactattctactcct------------gaaagagagaa-att-taagcttctcaatgtaaacaaattcaccctgagaggaaagggaaagattactgggttattaccctttggaatataaagaaatatctccaggaggaagataagtctttgtgtttacaacctgtgaaatatccctatggct-----------ctctgtctcagccctctttgaaatgtagacacATACC-TTTGAAGAGGTAAATCTTTCTGGATGGTCTCTTATTATTGAATCACCCTTTAACTGCCAAGATTTGTTTGTTGACAAAAGTTTCAAATGTATTTGCTCAGAAAAGCCTTAC--TGCAAAAATATAAAAATATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87919279 457 - 181584905 gtttcctcaa----tcgttccctcttcttggaggatgagagccagaagtcacccaacttgtactggtatctgaac--tacaggtgaggaaggataaaaattcgaatctagggatttatgtaaatcttgactattctactcct------------gaaagagagaa-att-taagcttctcaatgtaaacaaattcaccctgagaggaaagggaaagattactgggttattaccctttggaatataaagaaatatctccaggaggaagataagtctttgtgtttacaacctgtgaaatatccctatggct-----------ctctgtctcagccctctttgaaatgtagacacATACC-TTTGAAGAGGTAAATCTTTCTGGATGGTCTCTCATTATTGAATCACCCTTTAACTGCCAAGATTTGTTTGTTGACAAAAGTTTCAAATGTATTTGCTCAGAAAAGCCTTAC--TGCAAAAATATAAAAATATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1142149 457 - 8785636 gtttcctcaa----tcgttccctcttcttggaggatgagagccagaagtcacccaacttgtactggtatctgaac--tacaggtgaggaaggataaaaattcgaatctagggatttatgtaaatcttgactattctactcct------------gaaagagagaa-att-taagcttctcaatgtaaacaaattcaccctgagaggaaagggaaagattactgggttattaccctttggaatataaagaaatatctccaggaggaagataagtctttgtgtttacaacctgtaaaatatccctatggct-----------ctctgtctcagccctctttgaaatgtagacacATACC-TTTGAAGAGGTAAATCTTTCTGGATGGTCTCTCATTATTGAATCACCCTTTAACTGCCAAGATTTGTTTGTTGACAAAAGTTTCAAATGTATTTGCTCAGAAAAGCCTTAC--TGCAAAAATATAAAAATATT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1610406 457 + 27333823 gtttcctcaa----tcgttccctcttcttggaggatgagagccagaagtcacccaacttgtacaggtatctgaac--tacaggtgaggaaggataaaaattcgaatctagggatttatgtaaatcttgactattctactcct------------gaaagagagaa-att-taagcttctcaatgtaaacaaattcaccctgagaggaaagggaaagattactgggttattaccctttggaatataaagaaatatctccaggaggaagataagtctttgtatttacaacctgtgaaatatccctatggct-----------ctctgtctcagccctctttgaaatgtagacacATACC-TTTGAAGAGGTAAATCTTTCTGGATGGTCTCTCATTATTGAATCACCCTTTAACTGCCAAGATTTGTTTGTTGACAAAAGTTTCAAATGTATTTGCTCAGAAAAGCCTAAC--TGCAAAAATATAAAAATATT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1880502 456 - 91010382 gtttcctcaa----tggttccctcttcttggaggatgagagccagaagtcacccaacttgtactggtatctgaac--tacaggtgaggaaggataaaaattcgaatctagggatttatgtaaatcttgactattctactcct------------gaaagagagaa-att-taagcttctcaatgtaaacaaattcaccctgagaggaaagggaaagattactgggttattaccctttggaatataaagaaatatctccaggaggaagataagtctttgtgtttacaacctgtgaaatatccctatggct-----------ctctgtctcagccctctttgaaatgtaG-CACATACC-TTTGAAGAGGTAAATCTTTCCGGATGGTCTCTCATTATTGAATCACCCTTTAACTGCCAAGACTTGTTTGTTGACAAAAGTTTCAAATGTATTTGCTCAGAAAAGCCTAAC--TGCAAAAATATAAAAATATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1991503 457 + 5179401 GTTTCCTCAA----TCGTTCCCTCTTCTTGGAGGATGAGAGCCAGAAGTCACCCAACTTGTACTGGTATCTGAAC--TACAGGTGAGGAAGGATAAAAATTCGAATCTAGGGATTTATGTAAATCTTGACTATTCTACTCCT------------gaaagagagaa-att-taagcttctcaatgtaaacaaattcaccctgagaggaaagggaaagattactgggttattaccctttggaatataaagaaatatctccaggaggaagataagtctttgtgtttacaacctgtgaaatacccctatggct-----------ctctgtctcagccctctttgaaatgtagacacATACC-TTTGAAGAGGTAAATCTTTCTGGATGGTCTCTCATTATTGAATCACCCTTTAACTGCCAAGATTTGTTTGTTGACAAAAGTTTCAAATGTATTTGCTCAGAAAAGCCTAAC--TGCAAAAATATAAAAATATT i manLeu1.NW_012103732v1 M 1020 C 0 s colAng1.NW_012115488v1 7697321 457 - 21726897 gtttcctcaa----tcgttccctctgcttggaggatgagagccagaagtcacccaacttgtactggtatctgaac--tacaagtgaggaaggataaaaattcgaatctagggatttatgtaaatcttgactattctactcct------------gaaagagagaa-att-taagcttctcaatgtaaacaaattcaccctgagaggaaagggaaagattactgggttattaccctttggaatataaagaaatatctccaggaggaagataagtctttgtgtttacaacctgtgaaatatccctatggct-----------gtctgtctcagccctctctgaaatgtagacacATACC-TTTGAAGAGGTAAATCTTTCTGGATGGTCTCTCATTATTGAATCACCCTTTAACTGCCAAAATTTGTTTGTTGACAAAAGTTTCAAATGTATTTGCTCAGAAAACCCTAAC--TGCAAAAATAGAAAAATATT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112518815 466 + 204313951 attgcctcag----tctttcccttttccccgaagatgagagccagaagtcccccaacttgtactggcatctaaac--tataggtgagaaactataaaaattcaaatctagaaatttatgtaaatcttcac---tctactcctgaaagaggtagagaaagagagaa-atgttaagtttttcaatgtaaacaaattcaccctaggaggaaagggaaagattactgggttattatcctttggaatataaagaaatacctccaggaggaagataagtctttgtgtttacaacctctgaaatatccctgtggct-----------ctgtatctcatccctctttgaaatgtagacacATAATGTTTGAAGAGGTAAATCTTTCTGGAT-ATCTCTCAATATTGAATCACCCTTTAA-TGCCAAGATTTGTTTCTTGACAAAAGTTTCAAATGTATTTGCTCAGAAATCCCTAAC--TGtaaaaatataaaaatatt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44964661 470 + 71252344 atttcctcaatctttctttccctcttcctggtagatgagagccagaagtcccccaacttgtactggcatctaaac--tataggtgagaaacgataaaaattcaaatctataaatttctgtaaatcttgac---tctactcctgaaagagggagagaaagagagaa-atg-taagtttctcaatgtaaacaaattcaccctaggaggaaagggaacgattactgggttattaccctttggaatataaagaaatagctccaggaggaagataagtctttgtgtttacaaactctgaaatatcactatggct-----------ctgtgtctcatccctctttgaaatgtagacacATAATGTTTGAAGAGGTAAATCTTTCTGGAT-GTCTCTTAATGTTGAATCACCCTTTAACTGCCAAGATTTGTTTCTTGACAAAAGTTTCAAATGTATTTGCTCAGAAATCCCTAAC--TGtaaaaatataaaaatatt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 329178 466 - 1393929 ATTTCCTCAA----TCTTTCCCTCTTCCCGGAAGATGAGAGCCAGAAGTCCCCCAACTTGTACTGGCATCTAAAC--TGGCGGTGAGACCCTGTAAAAATTCAAATCTAGAAACTTATGTAAATCTTGAC---TCTACTCCTGAAAGAGGgagagaaagagagaa-atg-tgagtttctcaatgtaaacaaattcacccaaggaggaaagggaaagattactgggttattaccgtttgaaatataaagaaatatctccaggaggaagataagtctttatgtttataacctctgaaatatccctatggct-----------ctgtgtctcattcctctttgaaatgtagacacATAATGTTTGAAGAGGTAAATCTTTCTGGAT-GTCTCTCAATATTGAATCACCCTTTAACTGTCAAGATTTGTTTCTTGACAAAAGTTTCAAATCTATTTGCTCGGAAATCCCTAAC--TGTAAAAATATAAAAATATG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1405533 462 - 15889662 acttcctcaa----tctttccctcttcccggaagatgagagccagaagtcccccaacttgtactgacatctaaac--tgtaggtgaaaaactataaaaattcaaatctagaaatttatgtaaatcttgac---tctactcctgaaagagg----gaaagagagaa-atg-taagtttctcaatgtaaacaaatttaccctaggaggaaagggaaagattactgggttattaccctttggaatatgaagaaatatctccaggaggaagataagtctttgtgtttacaacctctgaaatatccctatggat-----------ctgtgtctcattcctctttgaaatgtaGGCACATAATGTTTGAAGAGGTAAATCTTTCTGGAT-GTCTCTCAATATTGAATCACCCTTTAACTGCCAAGATTTGTTTCTTGACAAAAGTTTCAAATGTATTTGCTCAGAAATCCCTAAC--TGTAAAAATATAAAAATATT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1287116 418 - 29863360 ----------------------TTTTCTT---------------GAAGTCACCAAACACGTGCTGGTATCTGAAC--TACAGG-GAAGAACTGCAAAAATCTGAATTTGAGAATTCATGTAAATGTtgaccctcctcctcct------------gaaagagggaagaga-gaaacttctcaatgtaaacagattctctttggaaagagaggggaagattcttggactg--actattgagagtgcaaataaatatctcctggaggaagata--tctctgagtttACAACCTCTGAAAGGTCTCTCTGGTTCTCAGCGCCTGCTGAGTCTCCTCCCTCTTTGAAACTTAAACCTGTATC-TTTGAAGAAGTACATCTTTCTTGAGGGTCTCT-----------CACCCTTTAACTTTCAAAatctg----ttgagcccagtttcaagtatatttactcagaaagccttaactgtgcaaaaaattaaaaatatt i otoGar3.GL873536 C 0 I 2363 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I a score=4016184.000000 s hg38.chr5_GL383530v1_alt 20406 440 + 101241 cTTTCCTTGgaagtcacctctcttactctgacattagaaa-tttgtgtcttctc-tc----------ttttttt-----tttt----tt---cttctctgatctgcctggtctggctcaaggtttatcagttttattgatagtctcaaaaacctagcttttggtttcattgacttt-ccccactgtttttcagttttctgtgttattaatttcccatcttctctttgctgtttccttttttctgcttacgttggatttaagttgctcttcttttttaaatttacaaatgtgatagctgaggggatttgagaaccttttgcttttctattatagacatttaatgctataaatttccctctaaacactacttgagtggcatccctcaaatttttatgttttcatttttattcagtttaaaatcctttctaatgctgattgttttattct---------ttgacttatgatttattt s panTro5.chr5 20249215 443 + 181907262 cTTTCCTTGgaagtcacctgtcttactctgacattagaaa-tttgtgtcttctc-tc----------ttttttt-----tttt----tttttcttctgtgatctgcctggtctggctcaaggtttatcagttttattgatagtctcaaaaacctagcttttggtttcattgacttt-ccccactgtttttcagttttctgtgttattaatttcccatcatctctttgctgtttccttttttctgcttactttggatttaagttgctcttcttttttaaatttacaaatgtgatagctgaggggatttgagaaccttttgcttttctattatagacgtttaatgctgtaaatttccctctaaacactacttgagtggcatccctcaaatttttatgttttcatttttattcagtttaaaatcctttctaatgctgattgttttattct---------ttgacttatgatttattt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20266520 444 + 183735486 cTTTCCTTGgaagtcacctgtcttactctgacattagaaa-tttgtgtcttctcttc----------ttttttt-----tttt----tttttcttctgtgatctgcctggtctggctcaaggtttatcagttttattgatagtctcaaaaacctagcttttggtttcattgacttt-ccccactgtttttcagttttctgtgttattaatttcccatcatctctttgctgtttccttttttctgcttactttggatttaagttgctcttcttttttaaatttacaaatgtgatagctgaggggatttgagaaccttttgcttttctattatagacatttaatgctgtaaatttccctctaaacactacttgagtggcatccctcaaatttttatgttttcatttttattcagtttaaaatcctttctaatgctgattgttttattct---------ttgacttatgatttattt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4752359 444 - 13748885 cTTTCCTTGgaagtcacctctcttactctgacattagaaattttgtgtcttctc-tc----------ttttttt-----tttt----tt-tttttttctgatctgcctggtctggctcaaggtttatcagttttattgatagtctcaaaaacctagcttttggtttcatggactttcccccactgtttttcagttttctgtgttattaatttcccatcttctctttgttgtttccttttttctgcttactttggatttaagttgctcttcttttttaaatttacaaatgtggtagctgaggggatttgagaaccttttgcttttctattatagatatttaatgctataaatttccctctaaacactacttgagtggcatccctcaaatttttatgttttcatttttattcagtttaaaatcctttccaatgctgattgttttattct---------ttgacttatgatttattt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53787656 439 - 163208435 CTTTCCTTGgaagtcacctctcttactctgacattagaaa-tttgtgtcttctc-tc----------ttttttt-----ttct----tt----ttttctgatccgtctggtctagctcaaggtttatcagttttattgatagtctcaaaaacctagcttttggtttcattgacttt-ccccactgtttttcagttctctatgttattaatttcccatcttctctttgttgtttccttttttctgcttactttggatttaagttgctcttcttttttaaatttacgaatgtggtagctgaggggatttgagaaccttttgcttttctctaacagacatttaatgctataaatttccctctaaacactacttcagtggcatccctcaagtttttatgttttcatttttattcagtttaaaatccttcctaatgctgattgttttattct---------ttgacttatgatttattt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87815327 435 - 180051392 CTTTCCTTGGAAGTCATCTCTCTTACGctgacattagaaa-tttgtgtcttctc-tc----------ttttttt-----tttt----tt-----ttcccgatccatctggtctggctcgaggtttgtcagttttattgatagtctcaaaaacctagcttttagtttcattgatttt-ccccactgtttttcagttttctattttattaattttccatctgttctttgttgtttccttttttctgcttactttggatttaagttgctcttcttttttaaattcacaa---tttaagctaagtggatttgagatccttttgcttttgtattatagacatttaatgctataaatttccctttaaacactacttgagtggcatccctcaaatttttatgttttcatttttattcagtttaaaatccttcctaatgctgattgttttattct---------ttgacttatgatttattt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87919736 438 - 181584905 CTTTCCTTGGAAGTCATCTCTCTTACGctgacattagaaa-tttgtgtcttctc-tctct-------ttttttt-----tttt----tt-----tccctgatccatctggtctggctcgaggtttgtcagttttattgatagtctcaaaaacctagcttttagtttcattgatttt-ccccactgtttttcagttttctattttattaattttccatctgttctttgttgtttccttttttctgcttactttggatttaagttgctcttcttttttaaattcacaa---tttaagctaagtggatttgagatccttttgcttttgtattatagacatttaatgctataaatttccctttaaacactacttgagtggcatccctcaaatttttatgttttcatttttattcagtttaaaatccttcctaatgctgattgttttattct---------ttgacttatgatttattt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1142606 439 - 8785636 CTTTCCTTGGAAGTCATCTCTCTTACGctgacattagaaa-tttgtgtcttctc-tctctc------tcttttt-----tttt----tt-----tccctgatccatctggtctggctcgaggtttgtcagttttattgatagtctcaaaaacctagcttttagtttcattgatttt-ccccactgtttttcagttttctattttattaattttccatctgttctttgttgtttccttttttctgcttactttggatttaagttgctcttcttttttaaattcacaa---tttaagctaagtggatttgagatccttttgcttttgtattatagacatttaatgctataaatttccctttaaacactacttgagtggcatccctcaaatttttatgttttcatttttattcagtttaaaatccttcctaatgctgattgttttattct---------ttgacttatgatttattt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1610863 438 + 27333823 CTTTCCTTGGAAGTCATCTCTCTTACGctgacattagaaa-tttgtgtcttctc-tcttt-------ttttttt-----tttc----tt-----tccctgatccatctggtctggctcgaggtttgtcagttttattgatagtctcaaaaacctagcttttagtttcattgatttt-ccccactgtttttcagttttctattttattaattttccatctgttctttgttgtttccttttttctgcttactttggatttaagttgctcttcttttttaaattcacaa---tttaagctaagtggatttgagatccttttgcttttgtattatagacatttaatgctataaatttccctttaaacactacttgagtggcatccctcaaatttttatgttttcatttttattcagtttaaaatccttcctaatgctgattgttttattct---------ttgacttatgatttattt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1880958 435 - 91010382 CTTTCCTTGGAACTCATCTCTCTTATGctgacattagaaa-tttgtgtcttctc-tc----------ttttttt-----tttt----tt-----ttcctgatctgtctggtgtggctcaaggtttgtcagttttattgatagtctcaaaaacctagcttttagtttcattgatttt-ccccactgtttctcagttttctattttattaattttccatctgttctttgttgtttccttttttctgcttactttggatttaagttgctcttcttttttaaatttacaa---tttaagctgagtggatttgagatccttttgcttttgtattatagacatttaatgctataaatttccctcttaacactacttgagtggcatccctcaaatttttatgttttcatttttattcagtttaaaatccttcctaatgctgattgttttattct---------ttgacttatgatttattt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1991960 439 + 5179401 CTTTCCTTGGAAGTCATCTCTCTTACGctgacattagaaa-tttgtgtcttctc-tc----------ttttttt-----tttttttctt-----tccctgatccatctggtctggctcgaggtttgtcagttttattgatagtctcaaaaacctagcttttagtttcattgatttt-ccccactgtttttcagttttctattttattaattttccatctgttctttgttgtttccttttttctgcttactttggatttaagttgctcttcttttttaaattcacaa---tttaagctaagtggatttgagatccttttgcttttgtattatagacatttaatgctataaatttccctttaaacactacttgagtggcatccctcaaatttttatgttttcatttttattcagtttaaaatccttcctaatgctgattgttttattct---------ttgacttatgatttattt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7697778 445 - 21726897 CTTTCCTTGgaagtcatctctcttactctgatattagaaa-tttgtgtcttctc-tctctctcttttttttttt-----tttt----tt-----tttctgatccatctggtctggctcgaggtttgtcagttttattgatagtctcaaaaacctagcttttggtttcattgatttt-ccctgctgtttttcagttttctattttattaatttcccatctgttctttgttgtttccttttttctgcttactttggatttaagttgctcttgtttttcaaatttgcaa---ttcaagctgagtggatttgagatccttttgcttttgtattatagacatttaatgctataaatttccctctaaacactacttgagtggcagctctcaaatttttatgttttcatttttattcagtttaaaatccttcctaatgctgattgttttattct---------ttgacttgtgatttattt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112519281 426 + 204313951 -tttCCTTGGAagtcatgtctcttactctgacattagaaa-tttgtgtcttctc-tc----------tc----------tttt----tt-----ttcctaatccatctgatctagctagaggtttataaattttattgttagtctcaaaaaactagccttgggtttcattgatttt-ccctactatttttcagttttctatttttttaatttcccagctgctctttgttgttttcttttttctgcttacattgtgtttaacttgcccttcttttttaaatttacaaatgtggcagctgaggggatttgagatccttttgcttttctattacagacattt-atgctatgaatttccctctaaacattacttgagtggtatcccacaaagttttatgttttcatttttatt--gtttaaaatccttcctaatgctgactgttctattct---------ttgacttatgattta--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44965131 444 + 71252344 -tttCCTTGGAAGTCAACGCTCTTAGTctgacattcgaaa-tttgtgtcttctc-tc----------tctctctttttttttt----tt-----tttctgatccgtctgatctaggtagaagtttatcaattttattgttagtctcaaaaaactagcctttggtttcattgatttt-ccctactatttttcagttttctattttattaatttcccatctgctctttattgttttcttttttctgcatacattgtgtttaacttgatcttcttttttaaatttacgaatgtggcagctgaggggatttgagatccttttgcttttctattgtagacatttaatgctatgaatttccctctaaacactacttgagtggtatcccacaaat-----tgttttcatttttatt--gtttaaaatccttcctaatgctgattgttttattcttgtttgttcttaatttctaatttagtt i saiBol1.JH378106 C 0 I 890 s cebCap1.NW_016107830v1 329644 401 - 1393929 -TTTCCTTGgaagtcacctctcttagtctgacattagaaa-tttgtgtcttctc-tc----------tctct-------cttt----tt-----tttctgatctgtctgatctagctagaggtttatcaattttattgttagtctcaaaaaactagcctttggtttcattgatttt-ctctactatttttcagttttctattttattaatttcccatctgctctttgttgttttcttttttctgtttacattgtgtttaacttgctcttcttttttaaatttacaaatgtggcagctgaggggatttgagattgttttgcttttct-----------------------------ctctaaacactacttgagtggtatcccacaaat---tatgtcttcgtttttatt--gtttaaaatccttcctaatgctgattgtttcattct---------ttgacttatgatttattt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1405995 431 - 15889662 -TTTCCTTGgaagtcacctctcttactctgacattagaaa-tttgtgtcttctc-tc----------tct---------ctat----tt-----tttctgatccatctgatctagctagaggtttatcaattttattgttagtctcaaaaaactagcctttggtttcattgatttt-ccctactatttttcagttttctattttattaatttcccatctgctctttgttgttttcttttttctgcttacattgtgtttaacttgctcttcttttttaaatttacaaatgtggcagctgaggggatttgagatccttttgcttttctattatagacatttaatgctatgaatttccctctgaacactacttgagtggtatcccacaaatttttatgttttcatttttatt--gtttaaaatccttcctaatgctgattgttttattct---------ttgacttatgatttattt i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e otoGar3.GL873536 1287534 2363 - 29863360 I a score=8281.000000 s hg38.chr5_GL383530v1_alt 20846 1 + 101241 a s panTro5.chr5 20249658 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 20266964 1 + 183735486 a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4752803 1 - 13748885 a i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53788095 1 - 163208435 a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87815762 1 - 180051392 a i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87920174 1 - 181584905 a i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1143045 1 - 8785636 a i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1611301 1 + 27333823 a i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1881393 1 - 91010382 a i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1992399 1 + 5179401 a i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7698223 1 - 21726897 a i colAng1.NW_012115488v1 C 0 C 0 s cebCap1.NW_016107830v1 330045 1 - 1393929 a i cebCap1.NW_016107830v1 C 0 I 1133 s aotNan1.NW_018506370v1 1406426 1 - 15889662 a i aotNan1.NW_018506370v1 C 0 I 975 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e otoGar3.GL873536 1287534 2363 - 29863360 I e saiBol1.JH378106 44965575 890 + 71252344 I e calJac3.chr2 112519707 0 + 204313951 C a score=97762.000000 s hg38.chr5_GL383530v1_alt 20847 16 + 101241 gaagtatgtcatttag s panTro5.chr5 20249659 16 + 181907262 gaagtatgtcatttag i panTro5.chr5 C 0 C 0 s panPan2.chr5 20266965 16 + 183735486 gaagtatgtcatttag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4752804 16 - 13748885 gaagtatgtcatttag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53788096 16 - 163208435 gaagtatgtcatttag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87815763 16 - 180051392 gaagtatgccatatag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87920175 16 - 181584905 gaagtatgccatatag i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1143046 16 - 8785636 gaagtatgccatatag i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1611302 16 + 27333823 gaagtatgccatatag i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1881394 16 - 91010382 gaagtatgccatatag i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1992400 16 + 5179401 gaagtatgccatatag i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7698224 16 - 21726897 gaagtatgccatatag i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112519707 15 + 204313951 -aagtataccattaag i calJac3.chr2 C 0 I 965 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e otoGar3.GL873536 1287534 2363 - 29863360 I e aotNan1.NW_018506370v1 1406427 975 - 15889662 I e cebCap1.NW_016107830v1 330046 1133 - 1393929 I e saiBol1.JH378106 44965575 890 + 71252344 I a score=2404319.000000 s hg38.chr5_GL383530v1_alt 20863 426 + 101241 ggccaggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggaggttgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaattagctgggcctggtggcgggcacctgtagtcccagctacttgggaggctgaggcagaagaatggcatgaacccaggaggcagagtttgcagtgagctgagatcgtgccactgcactccagcctaggtgacagagcaagactccgtctc-----gagaaaaaaaaaaaaa-----aagaagtatgccatttagtttctaaatattcaggagtttcaagagatctttttgttcttaatttctaatttagttccattgtgattagacagtatcttttgtacaatatggatccctttaaatatatt s panTro5.chr5 20249675 424 + 181907262 ggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcatgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaattagctgggcctggtggcgggcacctgtagttccagctacttgggaggctgaggcagaagaatggcatgaacccaggaggcagagtttgcagtgagctgagatcgtgccactgcactccagcctgggtgacagagcaagactccgtctc-----gagaaaaaaaaaaaaa-------gaagtatgccatttagtttctaaatattcaggagtttcaagagatctttttgttcttaatttctaatttagttccattgtgattagatagtatcttttgtacaatatggatccctttaaatatatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20266981 422 + 183735486 ggccaggtgtggtggctcactcctgtaatcccagcactttgggaggccgaggcgggcggatcatgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaattagctgggcctggtggcgggcacctgtagttccagctacttgggaggctgaggcagaagaatggcatgaacccaggaggcagag-ttgcagtgagctgagatcgtgccactgcactccggcctgggtgacagagcaagactccgtctc-----gagaaaaaaaaaaaa--------gaagtatgccatttagtttctaaatattcaggagtttcaagagatctttttgttcttaatttctaatttagttccattgtgattagatagtatcttttgtacaatatggatccctttaaatatatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4752820 424 - 13748885 ggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaattagctgggcctggtggcaggcacctgtagtcccagctacttgggaggctgaggcagaagaatggcatgaacccaggaggcagagtttgcagtgagctgagatcgtgccactgcactccagcctgggtgacagagcaagactccgtctc-----gagaaaaaaaaaaaaa-------gaagtatgccatttagtttctaaatattcaggagtttcaagagatctttttgttcttaatttctaatttagttccattgtgattagacagtatcttttgtacaatatggatccctttaaatatatt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53788112 431 - 163208435 ggccaggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccatctttactaaaaatacaaaaaaattagctgggcctggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatagcgtgaacccaggaggcggagtttgcagtgagccgagattgtgccactgcactccagcctgggtgacagagcgagactccgtttc-----gagaaaaaaaaaaaaaaaaaaaagaagtatgccatttagtctctaaatattcaggattttcaagagatctttttgttcttaatttctaatttggttctattgtgattagacagtatcttttgtacactatggatccctttaaatatatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87815779 431 - 180051392 ggccagatgtggtggctcatgcctgtaatcccagcactttggaaggccgaggcaggcggatcacgaggtcaggagatcgagaccatcctggctaatatggtgaaaccccgtctctactaaaaatacaaaaaaattagctgggcgtggtggtaggcacctgtagtcccagctactcaggaggctgaggcaggagaatggtgtgaacctgggaggcagagcttgcagtgagccgagatcgcgtcactgcactccagcctgggtgacagagcgagactccgtctc-----aaaaaaaaaaaaaaaaaaaaaaagaagtatgccatttagtttctgaatattcaggattttcaagagatctctttgttcttaatttttaatttaattctattgtgattagacagcatcttttgtacaatatggatccctttaaatatatt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87920191 431 - 181584905 ggccagatgtggtggctcatgcctgtaatcccagcactttggaaggccgaggcaggcggatcacgaggtcaggagatcgagaccatcctggctaatatggtgaaaccccgtctctactaaaaatacaaaaaaattagctgggcgtggtggtaggcacctgtagtcccagctactcaggaggctgaggcaggagaatggtgtgaacctgggaggcagagcttgcagtgagccgagatcgcgtcactgcactccagcctgggtgacagagcgagactccgtctc-----aaaaaaaaaaaaaaaaaaaaaaagaagtatgccatttagtttctgaatattcaggattttcaagagatctctttgttcttaatttttaatttaattctattgtgattagacagcatcttttgtacaatatggatccctttaaatatatt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1143062 430 - 8785636 ggccaggtgtggtggctcatgcctgtaatcccagcactttggaaggccgaggcaggcggatcacgaggtcaggagatcgagaccatcctggctaatatggtgaaaccccgtctctactaaaaatacaaaaaaattagctgggcgtggtggtaggcacctgtagtcccagctactcaggaggctgaggcaggagaatggtgtgaacctgggaggcagagcttgcagtgagccgagatcgcgtcactgcactccagcctgggtgacagagcgagactccatctc------aaaaaaaaaaaaaaaaaaaaaagaagtatgccatttagtttctgaatattcaggattttcaagagatctctttgttcttaatttttaatttaattctattgtgattagacagcatcttttgtacaatatggatccctttaaatatatt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1611318 421 + 27333823 ggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccgaaacgggcggatcacgaggtcaggagatcgggaccatcctggctaatatggtgaaaccccgtctctactaaaaatacaaaaaaattagctgggcgtggtggcgagcacctgtagtcccagctactcaggaggctgaggcaggagaatggtgtgaacctgggaggcagagcttgcagtgagccgagatcgcgtcactgcactccagcctgggtgacagagcgagactccgtctc---------------aaaaaaaaaaaaagaagtatgccatttagtttctgaatattcaggattttcaagagatctctttgttcttaatttttaatttaattctattgtgattagacagcatcttttgtacaatatggatccctttaaatatatt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1881410 429 - 91010382 ggccaggtgtggtggctcacacctgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaatatggtgaaaccctgtctctactaaaaatacaaaaaaattagctggacgtggtgccgggcacctgtagtcccagctactcaggaggctgaggcagaagaatggtgtgaacctgggaggcagagcttgcagtgagctgaaatcgcgccactgcactccagcctgggtgacagagcgagactctgtttc-------aaaaaaaaaaaaaaaaaaaaaaaggtatgccatttagtttctgaatattcaggattttcaagagatctctttgttcttaatttttaatttaattctattgtgattagacagcatcttttgtacaatatggatccctttaaatatatt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1992416 429 + 5179401 ggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccgagatgggcggatcacgaggtcaggagatcgggaccatcctggctaatatggtgaaaccccgtctctactaaaaatacaaaaaaattagctgggcgtggtggcgagcacctgtagtcccagctactcaggaggctgaggcaggagaatggtgtgaacctgggaggcagagcttgcagtgagccgagatcgcgtcactgcactccagcctgggtgacagagcgagactccgtctc-------aaaaaaaaaaaaaaaaaaaaagaagtatgccatttagtttctgaatattcaggattttcaagagatctctttgttcttaatttttaatttaattctattgtgattagacagcatcttttgtacaatatggatccctttaaatatatt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7698240 436 - 21726897 ggccaggtgtggtggctcaagcctgtaatcccagcactttgggaggccgagacgggcggatcacgaggtcaggagatcgagaccatcctggctaatatggtgaaaccctgtctctactaaaaatacaaaaaaattagctgggtgtggtggcgggcacctgtagtcccagctactcaggaggctgaggcaggagaatggtgtgaacctgggaggcagagcttgcagtgagctgagatcgcgtcactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaacaaaaaacaaaaaaaaagaagtatgccatttagtttctgaatattcaggattttcaagacatctctttgttcttaatttttaatttagttctattgtgattagacagcatcttttgtacaatatggatccctttaaatatatt i colAng1.NW_012115488v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e otoGar3.GL873536 1287534 2363 - 29863360 I e aotNan1.NW_018506370v1 1406427 975 - 15889662 I e cebCap1.NW_016107830v1 330046 1133 - 1393929 I e saiBol1.JH378106 44965575 890 + 71252344 I e calJac3.chr2 112519722 965 + 204313951 I a score=2880566.000000 s hg38.chr5_GL383530v1_alt 21289 481 + 101241 gacgtttgttttatggctcagggtattgtctgttttggtaaat-attgtgcgtgcacttgaaaagaa---gtgtt----ggatataatgttcaacaaatgtcaggtcaggttgtgttgttcaagccttctatacttttactggatttctgtcta-tttattctaccaattattggaaaagagttgttgaaatctctggctataattgtggtttctgtatttctccttacaattctatgaggttttgcttcatgtctgttgaagctctgttgttagactcataaatatttagga-ttataatgtcctttaggt-acactggccacattattattttgaaa-taactttcattttccctcatactattcactattctgcagtctactttgtctaatattaatataggcacttcagctttcttttgattagtattagcatgatacatctttttttcataattttattttaacacattatgtctttaaatttaaatt s panTro5.chr5 20250099 481 + 181907262 gacgtttgttttatggctcagggtattgtctgttttggtaaat-attgtgcgtgcacttgaaaagaa---gtgtt----ggatataatgttcaacaaatgtcaggtcaagttgtgttgttcaagccttctatacttttgctggatttctgtcta-tttattctaccaattattggaaaagagttgttgaaatctctggctataattgtggtttctgtatttctccttacaattctatgaggttttgcttcatgtatgttgaagctctgttgttagactcataaatatttagga-ttataatgtcctttaggt-acactggccacactattattttgaaa-taactttcattttccctcatactattcactattctgcagtctactttgtctaatattaatataggcacttcagctttctgttgattagtattagcatgatacatctttttttcataattttattttaacacattatgtctttaaatttaaatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20267403 481 + 183735486 gacgtttgttttatggctcagggtattgtctgttttggtaaat-attgtgcgtgcacttgaaaagaa---gtgtt----ggatataatgttcaacaaatgtcaggtcaagttgtgttgttcaagccttctatacttttgctggatttctgtcta-tttattctaccaattattggaaaagagttgttgaaatctctggctataattgtggtttctgtatttctccttacaattctatgaggttttgcttcatgtatgttgaagctctgttgttagactcataaatatttagga-ttataatgtcctttaggt-acactggccacactattattttgaaa-taactttcattttccctcatactattcactattctgcagtctactttgtctaatattaatataggcacttcagctttctgttgattagtattagcatgatacatctttttttcataattttattttaacacattatgtctttaaatttaaatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4753244 475 - 13748885 gacgtttgttttatggctcagggtattgtctgttttggtaaat-attgtgcgtgcacttgaaaagaa---gtgtt----ggatataatgttcaacaaatgtcaggtcaagttgtgttgttcaagccttctatacttttattggatt----tcta-tttattctaccaattattggaaaagagttgttgaaatctctggctataattgtggtttctgtatttctccttacaattctatgaggttttgcttcatgtatgttgaagctctgttgttagactcataaatatttagga-ttataatgtcctttaggt-acactggccacattattattttgaaa-taactttcattttccctcatactattcactattctgcagtctactttgtctaatattaatataggcacttcagctttcttttggttagtattagcatgatacatc--tttttcataattttattttaacacattatgtctttaaatttaaatt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53788543 482 - 163208435 gacgtttgttttatggctcagggtattgtctgttttggtaaataattgtgtgtgcatgtgaaaagaa---gtgtt----ggatataatgttcaacaaatgtcaggtcaagttgtgttgtttaagccttctatacttttactgtatttctgtcta-tttattccaccaattattggaaaagagttgttgaaatctctggctataattgtggtttctctatttctccttacaattctatgaggttttgcttcatgtatgttgaagctctgttattaggctcataaatatttagga-ttataatgtccttttggt-acattggccacattattattttgaaa-taactttcattttccctcatactattcactattctgcagtctactttgtctaatattaatataggcacttcagctttcttttgattagtattagcatgatacatcattttttcataattttattttgacacattatgtctttaaatttaaatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87816210 476 - 180051392 gacatttgttttatggctcagagt-ttgtcttttttggtaaat-attgtgtgtgcactt-----gaa---gtatt----ggatataatgttcaacaaatgtcaggtcaaggtgtgttgtttaagccttctatacttttactggatttctgtctatttttttctaccaattattgggaaagagttgttgaaatctctggctataattgtggtttctctatttctccttacagttctatgaggttttgcttcatgtatgttgaagctctgttattaggctcataaatgtttaaga-ttataatgtctttttggt-acattgaccacattattattttgaaa-taattttcatttcccctcatactattcactattctgcagtctactttgtataatattaatataggcacttcagctttcttttgattagtattagcatgatacatcttttttgcataattttattttaacacattatgtctttagatttaaatt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87920622 476 - 181584905 gacatttgttttatggctcagagt-ttgtcttttttggtaaat-attgtgtgtgcactt-----gaa---gtatt----ggatataatgttcaacaaatgtcaggtcaaggtgtgttgtttaagccttctatacttttactggatttctgtctatttttttctaccaattattgggaaagagttgttgaaatctctggctataattgtggtttctctatttctccttacaattctatgaggttttgcttcatgtatgttgaagctctgttattaggctcataaatgtttaaga-ttataatgtctttttggt-acattgaccacattattattttgaaa-taattttcatttcccctcatactattcactattctgcagtctactttgtataatattaatataggcacttcagctttcttttgattagtattagcatgatacatcttttttgcataattttattttaacacattatgtctttagatttaaatt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1143492 476 - 8785636 gacatttgttttatggctcagagt-ttgtcttttttggtaaat-attgtgtgtgcactt-----gaa---gtatt----ggatataatgttcaacaaatgtcaggtcaaggtgtgttgtttaagccctctatacttttactggatttctgtctatttttttctaccaattattgggaaagagttgttgaaatctctggctataattgtggtttctctatttctccttacaattctatgaggttttgcttcatgtatgttgaagctctgttattaggctcataaatgtttaaga-ttataatgtctttttggt-acattgaccacattattattttgaaa-taattttcatttcccctcatactattcactattctgcagtctactttgtataatattaatataggcacttcagctttcttttgattagtattagcatgatacatcttttttgcataattttattttaacacattatgtctttagatttaaatt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1611739 475 + 27333823 gacatttgttttatggctcagagt-ttgtcttttttggtaaat-attgtgtgtgcactt-----gaa---gtatt----ggatataatgttcaacaaatgtcaggtcaagttgtgttgtttaagccttctatacttttactggatttctgtcta-ttttttctaccaattattgggaaagagttgttgaaatctctggctgtaattgtggtttctctatttctccttacaattctatgaggttttgcttcatttatgttgaagctctgttattaggctcataaatgtttaaga-ttataatgtccttttggt-acattgaccacattattattttgaaa-taattttcatttcccctcatactattcactattctgcagtctactttgtataatattaatataggcacttcagctttcttttgattagtattagcatgatacatcttttttgcataattttattttaacacattatgtctttagatttaaatt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1881839 476 - 91010382 gacatttgttttacggctcagagtattgtcttttttggtaaat-attgtgtgtgcactt-----gaa---gtatt----ggatataatgttcaacgaatgtcagatcaagttgtgttgtttaagccttctatacttttactggatttctgtcta-tttattctaccagttattgggaaagagctgttgaaatctctggctataattgtggtttctctatttctccttacaattctatgacgttttgcttcatgtatgttgaagctctgttattaggctcataaatatttaaga-ttataatgtccttttggt-acattggccacattattattttgaaa-taactttcatttgccctcatactattcactattctgcagtctactttgtataatattaatataggcacttcagctttcttttgattagtattagcatgatacatctttttttcataattttattttaacacattatgtctttagatttaaatt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1992845 470 + 5179401 gacatttgttttatggctcagagt-ttgtcttttttggtaaat-attgtgtgtgcactt-----gaa---gtatt----ggatataatgttcaacaaatgtcaggtcaagttgtgttgtttaagccttctatacttttactggatttctgtcta-ttttttctaccaattattgggaaagagttgttgaaatctctagctataattgtggtttctctatttctccttacaattctatgaggttttgcttcat-----ttgaagctctgttattaggcttataaatgtttaaga-ttataatgtccttttggt-acattgaccacattattattttgaaa-taattttcatttcccctcatactgttcactattctgcagtctactttgtataatattaatataggcacttcagctttcttttgattagtattagcatgatacatcttttttgcataattttattttaacacattatgtctttagatttaaatt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7698676 472 - 21726897 gacatttgttttatggctcagagtattgtctgttttggtaaat-attgtgtgtgcactt-----gaa---gtatt----ggatataatgttcaacaaatgtcaggtcaagttgtgttgtttaagccttctatacttttactggatttctgtcta-tttattctaccaattattgggaaagagttgttg---tctctggctataattgcggtttctctatttctccttacaattctatgaggtttggcttcatgtatgttgaagctctgttattaggctcat-aatatttaaga-ttataatgtccttttggt-acattggccacattattattttgaaa-taactttcattttccctcatgctattcactattctgcagtctactttgtataatattaatataggcacttcagctttcttttgatcagtattagcatgatgcatctttttttcataattttattttaacacattatgtctttagatttaaatt i colAng1.NW_012115488v1 C 0 C 0 s otoGar3.GL873536 1289897 449 - 29863360 gagGctagttttatggcttaaa---ctattcatcttggtaagt-tttctgtatccatttgaaaagaatgtgtattctgcagttgttgaatgcaccaaatgtcag-ttaggttgtattggtcatgtcttcttcactttcactgaatttctttctg-tttgttt------------gggaaaagttattgaactctc------taattgtgatttgtccatttctccttaaaa---------------attcatgtactttgaagctttgcaattcgactcataaacatttaggatttattatgccctcttgatgaaatagatcactttattgttttaaaagtaaatat--ttttccctcatactcttcagtattttgaacttcactttgtctgatattaatatagtcactttagcttcctctggattagtatcatcatga--cataattttttcttaattatattttaattca-tgtgtccttaaatttaaatt i otoGar3.GL873536 I 2363 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e aotNan1.NW_018506370v1 1406427 975 - 15889662 I e cebCap1.NW_016107830v1 330046 1133 - 1393929 I e saiBol1.JH378106 44965575 890 + 71252344 I e calJac3.chr2 112519722 965 + 204313951 I a score=1415934.000000 s hg38.chr5_GL383530v1_alt 21770 271 + 101241 tcttgggaggctgaggtggctggatcacaaggtcaggagtttgagaccatcctggccaacatggtgaaaccccatctctactaaaatacaaaaaaattagctgggtgtggtggcaagcgcctatagtcccagctactctggaggctgaggcaggagaacggcatgaacctgggaggcggagcttgcagtgagccaagatggggccactgcattccagcctgggcgacagagggagactccgtct-caaaaaaaaaaaaaaaaaaa---ttaaatt s panTro5.chr5 20250580 274 + 181907262 tcttgggaggccgaggtggctggatcacaaggtcaggagtttgagaccatcctggccaacatggtgaaaccccatctctactaaaatacaaaaaaattagctgggtgtggtggcaagcgcctatagtcccagctactctggaggctgaggcaggagaacggcatgaacctgggaggtggagcttgcagtgagccgagatcaggccactgcactccagcctgggcaacagagggagactccgtct-caaaaaaaaaaaaaaaaaaaaaattaaatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20267884 271 + 183735486 tcttgggaggctgaggtggctggatcacaaggtcaggagtttgagaccatcctggccaacatggtgaaaccccatctctactaaaatacaaaaaaattagctgggtgtggtggcaagcgcctatagtcccagctactctggaggctgaggcaggagaacggcatgaacctgggaggtggagcttgcagtgagccgagatcaggccactgcactccagcctgggcaacagagggagactccgtct-caaaaaaaaaaaaaaaaaaa---ttaaatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4753719 272 - 13748885 tcttgggaggctgaggtggctggatcacaaggtcaggagtttgagaccatcctggccaacatggtgaaaccccatctctactaaaatacaaaaaaattagctgggtgtggtggcaagcgcctatagtcccagctactctggaggctgaggcaggagaacggcatgaacctgggaggcggagcttgcagtgagccgagatcgggccactgcactccagcctgggtgacagagggagactccgtct-caaaaaaaaaaaaaaaaaaa--attaaatt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53789025 269 - 163208435 tcttgggaggctgaggtggctggatcacaaagtcaggagattgagaccatcctggccaacatggtgaaaccccatctctactaaaataccaaaaaattggccgggtgtggtggcaagcgcctatagtcccagctacttgggaggctgaggcaggagaatggcatgaacccaggaggcggagcttgcagtgagccgagatcgggccactgcactccagcctgggcgacagagggagactccgtct-caaaaaaaaaaaaaaaaa-----ttaaatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87816686 268 - 180051392 tcttgggaggcagaggtggctggatcacaaggtcaggagattgagaccatcctggtcaacatggtgaaaccccatctctcctaaaatacaaaaaaattagccaggtgtggtggcaagtgcctgtagtcccagctacttgggaggcggaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagccaagatcgtgccactgcactccagcct-ggtgacagagcaagactccagct-aaaaaaaaaaccaaaaaa-----ttaaatt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87921098 268 - 181584905 tcttgggaggcagaggtggctggatcacaaggtcaggagattgagaccatcctggtcaacatggtgaaaccccatctctcctaaaatacaaaaaaattagccaggtgtggtggcaagtgcctgtagtcccagctacttgggaggcggaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagccaagatcgtgccactgcactccagcct-ggtgacagagcaagactccagct-aaaaaaaaaaccaaaaaa-----ttaaatt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1143968 269 - 8785636 tcttgggaggcagaggtggctggatcacaaggtcaggagattgagaccatcctggtcaacatggtgaaaccccatctctcctaaaatacaaaaaaattagccaggtgtggtggcaagtgcctgtagtcccagctacttgggaggcagaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagccaagatcctgccactgcactccagcct-ggtgacagagcaagactccagctaaaaaaaaaaaccaaaaaa-----ttaaatt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1612214 264 + 27333823 tcttgggaggcaaaggtggctggatcacaaggtcaggagattgagaccatcctggtcaacatggtgaaaccccatctctcctaaaatacaaaaaaattagccaggtgtggtggcaagtgcctgtagtcccagctacttgggaggcggaggcaggggaattgcttgaacccgggaggcagaggttgcagtgagccaagattgtgccactgcactccagcct-ggtgacagagcaagactccatct-aaaaaaataaataaa---------taaatt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1882315 265 - 91010382 tcttgggaggcagaggtggctggatcacaaggtcaggagattgagaccatcctggtcaacatggtgaaaccccatctctcctaaaatacaaaaaaattagtcaggtgtggtggcaggtgcctgtagtcccagctacttgggaggcggaggcaggggaatcgcttgaacccaggaggcagaggttgcagtgagccaagatcgtgcaactgcactccagcct-ggtgacagagcaagactccatct-aaaaaaaaa---aaaaat-----ttaaatt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1993315 265 + 5179401 tcttgggaggcaaaggtggctggatcacaaggtcaggagattgagaccatcctggtcaacatggtgaaaccccatctctcctaaaatacaaaaaaattagccaggtgtggtggcaagtgcctgtagtcccagctacttgggaggcggaggcaggggaattgcttgaacccaggaggcagaggttgcggtgagccaagatcgtgccactgcactccagcct-ggtgacagagcaagactccatct-aaaaaaaaa---aaaaaa-----ttaaatt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7699148 266 - 21726897 tcttgggaggcagaggtgactggatcacaaggtcaggagattgagaccatcctggtcaacatggtgaaaccccatctctactaaaatacaaaaaaattagccaggtgtggtggcaagtgcctgtagtcccagctacttgggaggcggaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagccaagattgtgccactgcactccagcct-ggtgacagaacaagactccatct-taaaaaaaaa--aaaaat-----ttaaatt i colAng1.NW_012115488v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e otoGar3.GL873536 1290346 0 - 29863360 C e aotNan1.NW_018506370v1 1406427 975 - 15889662 I e cebCap1.NW_016107830v1 330046 1133 - 1393929 I e saiBol1.JH378106 44965575 890 + 71252344 I e calJac3.chr2 112519722 965 + 204313951 I a score=111963.000000 s hg38.chr5_GL383530v1_alt 22041 17 + 101241 tcatttcttgtgggcaa s panTro5.chr5 20250854 17 + 181907262 tcatttattgtgggcaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20268155 17 + 183735486 tcatttattgtgggcaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4753991 17 - 13748885 tcatttcttgtgggcaa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53789294 17 - 163208435 tcatttcttgcgggcaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87816954 17 - 180051392 tcatttcttgtgggcaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87921366 17 - 181584905 tcatttcttgtgggcaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1144237 17 - 8785636 tcatttattgtgggcaa i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1612478 17 + 27333823 tcatttcttgtgggcaa i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1882580 17 - 91010382 tcatttcttgtgggcaa i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1993580 17 + 5179401 tcatttcttgtgggcaa i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7699414 17 - 21726897 tcatttctcgtgggcaa i colAng1.NW_012115488v1 C 0 C 0 s otoGar3.GL873536 1290346 17 - 29863360 tcattttttgtaggcag i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84818292 1441 + 108143057 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e aotNan1.NW_018506370v1 1406427 975 - 15889662 I e cebCap1.NW_016107830v1 330046 1133 - 1393929 I e saiBol1.JH378106 44965575 890 + 71252344 I e calJac3.chr2 112519722 965 + 204313951 I a score=354386.000000 s hg38.chr5_GL383530v1_alt 22058 49 + 101241 catataattgggaccttttattttacccaatctgacaatttctaccttt s panTro5.chr5 20250871 49 + 181907262 catataattgggaccttttattttacccaatctgacaatttctagcttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20268172 49 + 183735486 catataattgggaccttttattttacccaatctgacaatttctagcttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4754008 49 - 13748885 catataattgggaccttttattttacccaatctgacaatttctaccttt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53789311 49 - 163208435 catataattgggaccttttattttacccaatctgacaatttctaccttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87816971 49 - 180051392 catataattggaaccttttattttacccaatctgacaatttctgccttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87921383 49 - 181584905 catataattggaaccttttattttacccaatctgacaatttctgccttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1144254 49 - 8785636 catataattggaaccttttattttacccaatctgacaatttctgccttt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1612495 49 + 27333823 catataattggaaccttttattttacccaatctgacaatttctgccttt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1882597 49 - 91010382 catataattggaaccttttattttacccaatctgacaatttctgccttt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1993597 49 + 5179401 catataattggaaccttttattttacccaatctgacaatttctgccttt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7699431 49 - 21726897 catataattggaaccttttattttacccaatctgataatttctaccttt i colAng1.NW_012115488v1 C 0 C 0 s micMur3.chr12 84819733 44 + 108143057 catataattggggccttttat-----ctaatctgacaagctctaacttt i micMur3.chr12 I 1441 C 0 s otoGar3.GL873536 1290363 44 - 29863360 cacataattgggaccttttat-----ccaatctgaccatgtgtaccttt i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e aotNan1.NW_018506370v1 1406427 975 - 15889662 I e cebCap1.NW_016107830v1 330046 1133 - 1393929 I e saiBol1.JH378106 44965575 890 + 71252344 I e calJac3.chr2 112519722 965 + 204313951 I a score=1227735.000000 s hg38.chr5_GL383530v1_alt 22107 120 + 101241 taattgagagtatttaggccatttatatttaatattattattgatatgattc-----agttaaagtctattatcatcattatcctatttgttttattatgttagtcctgtgtcttcttcctttcc s panTro5.chr5 20250920 118 + 181907262 taattgagagtatttaggccatttatatttaatattattattgatatgattc-----agttaaagtctattatcatcattatcctatttgttttattatgttagtcctgt--cttctttctttcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20268221 118 + 183735486 taattgagagtatttaggccatttatatttaatattattattgatatgattc-----agttaaagtctattatcatcattatcctatttgttttattatgttagtcctgt--cttctttctttcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4754057 120 - 13748885 taattgagagtatttaggccatttatatttaatattattattgatatgattc-----agttaaagtctattatcatcattatcctatttgttttattatgttagtcctgtgtcttctttctttcc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53789360 120 - 163208435 taattgagagtatttaggccatttatatttaatattattattgatatgattc-----agttaaagtcatttatcatcattatcctatttgttttattatgttagtcctgtgtcttctttctttcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87817020 120 - 180051392 taattgagagtatttaggccatttatatttaatgtaattattgatatgattc-----agttaaagtctgttatcattattatcctatttgtttcattatgttagtcctgtgtcttctttctttcc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87921432 120 - 181584905 taattgagagtatttaggccatttatatttaatgtaattattgatatgattc-----agttaaagtctgttatcattattatcctatttgtttcattatgttagtcctgtgtcttctttctttcc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1144303 120 - 8785636 taattgagagtatttaggccatttatatttaatgtaattattgatatgattc-----agttaaagtctattatcattattatcctatttgtttcattatgttagtcctgtgtcttctttctttcc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1612544 120 + 27333823 taattgagagtatttaggccatttatatttaatgtaattattcatatgattc-----agttaaagtctattatcattattatcctatttgtttcattatgttagtcctgtgtcgtctttctttcc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1882646 120 - 91010382 taattgagagtatttaggccatttatatttaatgtaattattgatatgattc-----agttaaagtctattatcattattatcctatttgtttcattatgttagtcctgtgtcgtctttctttcc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1993646 120 + 5179401 taattgagagtatttaggccatttatatttaatgtaattattgatatgattc-----agttaaagtctattatcattattatcctatttgtttcattatgttagtcctgtgtcgtctttctttcc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7699480 120 - 21726897 taattgagagtatttaggccatttatatttaatgtaattattgatatgattc-----agttaaagtctattatcattattatcctatttgtttcattatgttaggcctgtgtcttctttctttcc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112520687 114 + 204313951 taattgagagtatttaggacatttatatttaatataattattgatatgattc-----agtagaagtctattatcatcattatcctatttgcttcattatgtaagtcctatgttttcttt------ i calJac3.chr2 I 965 C 0 s saiBol1.JH378106 44966465 114 + 71252344 taattgagagtatttaggacatttatacttaatataattattgatatgattc-----agtagaagtctattatcatcattatcctatttgtttcattatgtaagttctctgttttcttt------ i saiBol1.JH378106 I 890 C 0 s aotNan1.NW_018506370v1 1407402 120 - 15889662 taattgagagtatttaggacatttatatttaatataattattgatatgattc-----agtagaagtctattatcatcattatcctatttctttcattatgtaagtcctattttttctttcttttc i aotNan1.NW_018506370v1 I 975 C 0 s micMur3.chr12 84819777 120 + 108143057 taattgagagtatttagaccatttacatttaatgtaattattgatagggttc-----aattaaagcctattatcatcaccatgttatttgttttgttgtatttatcctatgtcttctttcctcct i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1290407 124 - 29863360 taattaggagtatttggggcatttacatttaatgtgattattgatatagttcagttaagttaaagtctgtcattgttatcatgctattaatttggttgtttttgtgctatgtcatc-ttctttct i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e cebCap1.NW_016107830v1 330046 1133 - 1393929 I a score=2428229.000000 s hg38.chr5_GL383530v1_alt 22227 233 + 101241 cttttcctttgtatctgtcttcttttgaattaatttagta-ttttttgatggtataattatttcatctttgtttattagctatgactg--ttttttttttttttttttt----agtgatcactttagttattct--tatctggcagtggt--------------------------tttatcctccagggatcatttggcaatgtctgagaacatttttaa-tttttgcaactggggagatgctgctggcatctagtgagtagagtctg s panTro5.chr5 20251038 228 + 181907262 cttttcctttgtatctgtcttcttttgaattaatttagta-ttttttgatggtataattatttcatctttgtttattagctatgactg--tttttttttttttt---------agtgatcactttagttattct--tatctggcagcggt--------------------------tttatcctctagggatcatttggcaatgtctgagaacatttttaa-tttttgcaactggggagatgctgctggcatctagtgagtagagtctg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20268339 225 + 183735486 cttttcctttgtatctgtcttcttttgaattaatttagta-ttttttgatggtataattatttcatctttgtttattagctatgactg--ttttttttttt------------agtgatcactttagttattct--tatctggcagcggt--------------------------tttatcctctagggatcatttggcaatgtctgagaacatttttaa-tttttgcaactggggagatgctgctggcatctagtgagtagagtctg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4754177 225 - 13748885 cttttcctttgtatctgtcttcttttgaattaatttagta-ttttttgatggtataattatttcgtctttgtttattagctctgactg--ttttttttttt------------agtgatcactttagttattct--tatctggcagtggt--------------------------tttatcctccagggatcatttggcaatgtctgagaatatttttaa-tttttgcaactggggagatgctgctggcatctagtgagtagagtctg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53789480 224 - 163208435 cttttcctttgtatctgtcttcttttg----aatttagtatttttttgatggtataattatttcatctttgtttattagctgtgactg--tttgttttttttt----------agtggtcactttagttattct--tatctggcagcagt--------------------------tttatcctccagggatcatttggcaatgtctgagaacatttttaa-tttttgcaacttgggagatgttgatggcatctagtgagtagagtcca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87817140 225 - 180051392 cttttcctttgtatctgccttcttttgaattaatttagta-ttttttgatggtataattatttcatctttgtttattagctatgactg--ttttttttttt------------agtggtcactttagttattct--tatttgggagcagt--------------------------tttatcctccagggatcatttggcaatgtctgacaacatttttaa-tttttgcaactggggagatgctgctggcatctagtgagtagagtcca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87921552 225 - 181584905 cttttcctttgtatctgccttcttttgaattaatttagta-ttttttgatggtataattatttcatctttgtttattagctatgactg--ttttttttttt------------agtggtcactttagttattct--tatttgggagcagt--------------------------tttatcctccagggatcatttggcaatgtctgaggacatttttaa-tttttgcaactggggagatgctgctggcatctagtgagtagagtcca i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1144423 225 - 8785636 cttttcctttgtatctgccttcttttgaattaatttagta-ttttttgatggtataattatttcatctttgtttattagctatgactg--ttttttttttt------------agtggtcactttagttattct--tatttgggagcagt--------------------------tttatcctccagggatcatttggcaatgtctgaggacatttttaa-tttttgcaactggggagatgctgctggcatctagtgagtagagtcca i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1612664 227 + 27333823 cttttcctttgtatctgccttcttttgaattaatttagta-ttttttgatggtgtaattatttcatctttgtttattagctatgactgttttttttttttt------------agtggtcactttagttattct--tatttgggagcagt--------------------------tttatcctccagggatcatttggcaatgtctgaggacatttttaa-tttttgcaactggggagatgctgctggcatctagtgagtagagtcca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1882766 238 - 91010382 cttttcctttgtatctgccttcttttgaattaatttagtatttttttgatggtaaaattatttcatctctgtttattagctatgactt--ttttttttttttttttttttttaagtggtcactttagttattct--tatctgggagcagt--------------------------tttatcctccagggatcatttggcaatgtctgagaacatttttaa-tttttgcaactggggagatgctgctggcatctagtgagtagagtcca i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1993766 226 + 5179401 cttttcctttgtatctgccttcttttgaattaatttagta-ttttttgatggtgtaattatttcatctttgtttattagctatgactg--tttttttttttt-----------agtggtcactttagttattct--tatttgggagcagt--------------------------tttatcctccagggatcatttggcaatgtctgaggacatttttaa-tctttgcaactggggagatgctgctggcatctagtgagtagagtcca i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7699600 227 - 21726897 cttttcctttgtatctgccttcttttgaattaatttagta-ttttttgatggtataattatttcatctttgtttattagctatgactg--tttttgttttttt----------agtgatcactttagtaattct--tacctgggagcagt--------------------------tttatcctccagtgatcacttggcaatgtctgagaacatttttaa-tttttgcaactggggagatgctgctggcatctagtgagtagagtcca i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112520801 227 + 204313951 cttttcctttgcatctaccttcttttgaattaatttagtt-tttt---atggtattattatgtcatctttgtttattagctgtgactc--tttattttgttatttt-------agtggtcactttagTTATTCA--TCTTcaggagcagt--------------------------tttatcctccagggatcatttagtgatgcctgagaacatttttaa-tttttgcaactggggagatgctgctggcatctagtgagcagagtcca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44966579 228 + 71252344 cttttcctttgcatctaccttcttttgaattaatttagtt-attt---atggcattattatgtcatctttgtttattagctatgactc--tttgttttgttatttt-------agtggtcactttagTTATTTT--TCTTcaggaggagt--------------------------tttatcctccagggatcatttggcaatgcctgagaacatttttaattttttgcaactggggagatgctgctggcatctagtgaatagagtcta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 331179 210 - 1393929 cttttcctttgcatctaccttcttttgaattaatttagtt-tttt---atggaattattatgtcatgtttgtttattagctatgactc--tttgttttgttatttt-------agtggtcactttagttattct--tcttcaggagcggt--------------------------tttatcctccagggatcatttggcgatgcctgagaacatttttaa-tttttgcaactggggagatgctgctggcat----------------- i cebCap1.NW_016107830v1 I 1133 C 0 s aotNan1.NW_018506370v1 1407522 219 - 15889662 ------cttttcatctaccttcttttgaattaatttagtt-tttt---atggtattattatgtcatctttgtttattagctatga--c--tttgttttgttatttt-------agtggtaactttagttattct--tcttcaggagcagt--------------------------tttatcctccagggatcatttggcgatgcctgagaacatttttaa-tttttgcaactggggaaatgctgctggcatctagtgagtagagtcca i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84819897 228 + 108143057 cttttcctctgtatttgctttcttttgaattgatctagta--ttttt-atgatataattttattgtcattgtttattagctatgactc--tttgttttattatttt-------agcagttattttaatgattct--tacctgggagcaat--------------------------tttttcccccagggcttattggacaatgtctgaagatatttttaa-ttgttacagctgggggaatgctgctggcttctaccaggtagagtcca i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1290531 255 - 29863360 ctttttctctgtatttcctgacttttgtgttgatctagta-tttttt-atggtatagttttgttgtc-ttgtttattaactatgactc--tcttttttgttatttt-------agCAATTATGTTCTTGATCCCAGGATTTGGGATCAAgatttttgatcttgattttgatcttgatttttcctgcagggttttttgg-caatgtctgaagacatttttaa-ttgtgacaccttggggaatgctgcaggcttctagcgggtggagtcca i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e proCoq1.NW_012147189v1 561630 21082 - 10520994 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I a score=4484470.000000 s hg38.chr5_GL383530v1_alt 22460 399 + 101241 gggatgctactaaaactcctacaatgcacctaacagctctccatgacaaagaattgtctggctcaaaatgacaaaagaactaaggttg-aaaacactgctttaggttttatactctacagc--tatcccatcaaagtctactttc---aagtactatatcccttcatgtgtaatataagaaccttacaatagtatacttccaattttcccttcttgacatttataatactgttgttatacattttatttatgtctctgttgaaaattccacaatatatttttat---ttttgctt------------------------------------------------------agacaactatctttgaaagatatataaataataag--aac-atgatctta-tc----tatttaccagtatagttatcatttctggtactcttcattcctttatgtagatctgtacttccat s panTro5.chr5 20251266 399 + 181907262 gggatgctactaaaactcctacaatgcacctaacagctctccatgacaaagaattgtctggctcaaaatgacaaaagaactaaggttg-aaaacactgctttaggttttatactctacagc--tatcccatcaaagtctactttc---aagtactatatcccttcatgtgtaatataagaaccttacaatagtatacttccaattttcccttcttgacatttataatactgttgttatacattttatttatgtctctgttgtaaattccacaatatatttttat---ttttgctt------------------------------------------------------agacaactatctttcaaagatatataaataataag--aac-atgatctta-tc----tatttaccaatatagttatcatttctggtgctcttcattcctttatgtagatccatacttccat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20268564 399 + 183735486 gggatgctactaaaactcctacaatgcacctaacagctctccatgacaaagaattgtctggctcaaaatgacaaaagaactaaggttg-aaaacactgctttaggttttatactctacagc--tatcccatcaaagtctactttc---aagtactatatcccttcatgtgtaatataagaaccttacaataatatacttccaattttcccttcttgacatttataatactgttgttatacattttatttatgtctctgttgtaaattccacaatatatttttat---ttttgctt------------------------------------------------------agacaactatctttcaaagatatataaataataag--aac-atgatctta-tc----tatttaccaatatagttatcatttctggtgctcttcattcctttatgtagatccatacttccat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4754402 399 - 13748885 gggatgctactaaaactcctacaatggacctaacagctctccatgacaaagaattgtctggctcaaaatgacaaaagaactaaggttg-aaaacactgctttaggttttatactctacagc--tatcccatcaaagtctactttc---aagtactatatcccttcatgtgtaatataagaaccttacaatagtatacttccaattttcccttcttgacatttataatactgttgttatacattttatttatgtctctgttgtaaattccacaatatatttttat---ttttgctt------------------------------------------------------agacaactatctttgaaagatatataaataataag--aac-atgatctta-tc----tatttaccaatatagtcatcatttctggtgctcttcattcctttatgtagatccatacttccat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53789704 399 - 163208435 gggatgctactaaaactcctacaatgcacctaacaactctccatgacaaagaattgtctggctcaaaatgtcaagagaactaaggttg-aaaacactgctttaggttttatactctacagc--tatcccatcaaagtctactttc---aagtactatatcccttcatgtgtaatataagcaacttacaatagtatacttccaattttcctttcttgacatttataatactgttgttatacattttatttatgtctctgttgtaaattccataatatatttttat---ttttgctt------------------------------------------------------agacaactatctttgaaagatgtataaataataag--aaa-atgatctta-tc----tatttaccaatatagttatcatttctggtactcttcattcctttgtgtagatccatacttccat i nomLeu3.chr2 C 0 I 151 s rheMac8.chr6 87817365 378 - 180051392 gggatactactaaaa---ctacaatgcacctaacagctctccatgacaaagaattatctggctcaaaatgtcaaaagaactaaggtcaaaaaacactgctttaggttttatactctacaac--tatcccgtca----------------------atatcccttcatgtgtaatataagaaccttaccatagtatacttccaattttcccttcttgacatttataatactgttgttatatactttatttatgtctctgttgtaaattccacaatatatttttat---ttttgctt------------------------------------------------------agacaactatctttggaagatatataaataataag--aaa-atgatctta-cc----tatttaccaatatagttatcattcttggtgctcttcattcctttatggagatccatacttccat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87921777 378 - 181584905 gggatactactaaaa---ctacaatgcacctaacagctctccatgacaaagaattatctggctcaaaatgtcaaaagaactaaggtcaaaaaacactgctttaggttttatactctacaac--tatcccgtca----------------------atatcccttcatgtgtaatataagaaccttaccatagtatacttccaattttcccttcttgacatttataatactgttgttatatactttatttatgtctctgttgtaaattccacaatatatttttat---ttttgctt------------------------------------------------------agacaactatctttggaagatacatgaataataag--aaa-atgatctta-cc----tatttaccaatatagttatcattcttggtgctcttcattcctttatggagatccatacttccat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1144648 378 - 8785636 gggatactactaaaa---ctacaatgcacctaacagctctccatgacaaagaattatctggctcaaaatgtcaaaagaactaaggtcaaaaaacactgctttaggttttatactctacaac--tatcccatca----------------------atatcccttcatgtgtaatataagaaccttaccatagtatacttccaattttcccttcttgacatttataatactgttgttatatactttatttatgtctctgttgtaaattccacaatatatttttat---ttttgctt------------------------------------------------------agacaactatctttggaagatatataaataataag--aaa-atgatctta-cc----tatttaccaatatagttatcattcttggtgctcttcattcctttatggagatccatacttccat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1612891 378 + 27333823 gggatactactaaaa---ctacaatgcacctaacagctctccatgacaaagaattatctggctcaaaatgtcaaaagaactaaggtcaaaaaacactgctttaggttttatactctacagc--tatcccgtca----------------------atatcccttcttgtgtaatataagaaccttaccatagtatacttccaattttcccttcttgacatttataatactgttgttatatactttatttatgtctctgttgtaaattccacaatatatttttat---ttttgctt------------------------------------------------------agacaactatctttggaagatatgtaaataataag--aaa-atgatctta-cc----tatttaccaatatagttatcattcttggtgctcttcattcctttatggagatccatacttccat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1883004 378 - 91010382 gggagactactaaaa---cgacaatgcacctaacagctctccatgacaaagaactatctggctcaaaatgtcaaaagaactaaggtcaaaaaacactgctttaggttttatactctacagc--tatcccgtca----------------------atatcccttcatgtgtaatataagaaccttaccatagtatacttccaattttcccttcttgacatttataatactgttgttatatactttatttatgtctctgttgtaaattccacaatatatttttat---ttttgctt------------------------------------------------------agacaactatctttggaagatatgtaaataataag--aaa-atgatctta-cc----tatttaccaatatagttatcattcttggtgctcttcattcctttatggagatccatacttccat i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1993992 378 + 5179401 gggatactactaaaa---gtacaatgcacctaacagctctccatgacaaagaattatctggctcaaaatgtcaaaagaactaaggtcaaaaaacactgctttaggttttatactctacagc--tatcccgtca----------------------atatcccttcatgtgtaatataagaaccttaccatagtatacttccaattttcccttcttgacatttataatactgttgttatatactttatttatgtctctgtggtaaattccacaatatatttttat---ttttgctt------------------------------------------------------agacaactatctttggaagatatgtaaataataag--aaa-atgatctta-cc----tatttaccaatatagttatcattcttggtgctcttcattcctttatggagatccatacttccat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7699827 377 - 21726897 gggatggctctaaaa---ctacaacgcacctaacagctctccatgacaaagaattatctggctcaaaatgtcaaaagaactaaggtcgaaaaacactgctttaggttttatactttacagc--tatcctgtca----------------------atatcccttcatgtgtaatataagaaccttacaatagtatatttccaattttcccttcttgacatttataatactgttgttatatactttatttatgtctctgttgtaaattccacaatatatttttat---tttt-ctt------------------------------------------------------agacaactatctttgaaagatatataaataatacg--aaa-atgatctta-cc----tatttaccaatatagttatcattcttggtgctcttcattcctttatggagatccatacttccat i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112521028 403 + 204313951 gggatgctactaaatatcctacaatgaagctaacagctccccaagacaaagaattatctggcccaaaatgtcaaaagtgctaaggttgaaaaacactgctttaggttttatactctacagc--tgtcccatcaaagtctactttc---aagtgctgtatcccttcatgtgtaatataagaactttaccatagtatacttctaattttcccctctagacatttataatactgttattatatgttttatttatatctttgttgtaaaccccattatatacatatct----tttgcttaaac--------------------------------------------------aggcaactatctttgaaagatatatagataataag--aaa-atgatctta-tc----tatttaccaatatagttatcatttctggtgttcttcattcctttatatagatccatatttccat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44966807 408 + 71252344 gggatgctactaaatattctacaatgaagctaacggctcccctagacaaagaattatctggcccaaaatgtcaaaagtgctaaggttgaaaaacactgctttaggttttatactctacagc--tatcccatcaaagtctactttc---aagtgctatatcccttcatgtgtaatataagaactttaccctagtatacttctaattttcccctctagacatttataatactgctattatacattttatttatatcttttttgtaaaccccattatatatttttat---atttgcttaaac--------------------------------------------------agacaactatctttgaaagatatatagataataag-aaaa-atgatctga-tctgtttatttatctgtttagttatcatttctggtgttcttcattcctttacatagat-catatttccat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 331389 392 - 1393929 ------ctactaaacatcctacaatgaagctaacagctccccaagacaaagaattttctggcccaaaatgtcaaaagtgctaaggttgaaaaacactgctttaggtgttatactcgacagc--tatcccatcaaagtctactttc---aagtgctatatcccttcatgtgtaatataagaactttaccatagtata---ctaattttcccctctagacatttataatactgttattgtacattttatt--tatcttttctgtaaaccccattatatatttttat---ttttgcttaaac--------------------------------------------------aggcaactatctttggaagatatatagataataag--aaa-atgatctta-tc----tgtttaccaatatagttatcatttctggtgttcttcattcctttacgtagat-cgtatttccat i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1407741 453 - 15889662 gggatgctactaaatatcctacaatgaagctaacagctcctcaagacaaagaattatctggcccaaaatgtcagaagtgctaaggttgaaaaacactgctttaggttttatactctacagc--tatctcatcaaagtctactttc---aagtgctatatcccttcatgtgtaatataagaactttaccatagtatacttctaatttttccctctagacatttataatactgttattatgcattttatttatatctttgttgtaaaccccattatatatatattt----tttgctcaaatataaaaatattttttaTATTTAAGCTTAAAGACAACtatcttttgcttaaagacaactatctttgaaagatatatagataataag--aaa-atgatctta-tc----tgtttaccaatatagttatcatttctagtgttcttcattcctttacgtagatccatatttccat i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84820125 406 + 108143057 aggatgttactaaacatcctgcagtgcccatcatagctccctatcacaaagaattatctggcctgaattgtcaaaagtgctaaggtctaaaaacaatgctttaggttttatactctatgactttaactcatcaaagtctaccttcaaatgatattgtaacctttcatgtgtaatataaaagccttacaatagtatactttcaattctgccctcctgacctttatactattgtcgctgtag-----atttatatctgtgttgtaattacca-aatatattgttattatttttgtttaaat--------------------------------------------------agacaattatctttgaaagttatttaaataataagaaaaa---aaagtta-tc----tgtttaccggtgtagttattatttctggtgctattcattcatttgtgtagattcatacctccat i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 582712 409 - 10520994 gggatgttactaaacatcctacagtgcacataatagctccctatcacaaagaattatctggcccgaactgtcaaaagtgctgagatttgaaaacAAtgctttaagttttatactctatgactttaactcatcaaagtctacctttaaatgatattgtaaccctttatgtgtaatatgaaagacttacaatagtatacttccaattctgccctcctgacctttatactattgttgttgtaaattttatttatatctatgttgtaaccccca-aatatattgttattatttttattgaaat--------------------------------------------------agacaactatctttgaaagttatttaaataataag--aaa---aaatttg-tc----tgtttaccaatgtagttattatttctggtgctgttcattcatttgtgtagatctgtacctccat i proCoq1.NW_012147189v1 I 21082 C 0 s otoGar3.GL873536 1290786 396 - 29863360 gggatgtcactgaacatcctccagggcccacaataactccctgtgatgaggaattgtctggccccaaatgtcaaaagtgctaagtttgaaaaacactgATTTAGG---TGTACTCTATGGctttatcccatcacaggctaccttt---taatattatatcccttca-gtgtaatataaaagcct--------tatgctttcaattttgccctgctgacctttatattattatc---atacttttaatttatatctgtattataaaccctataatatattgttatagacaatatttaaat--------------------------------------------------agacaactgtttttgaaatttagtgaaataataat--aaatttacatttacta----catttactgatgtagttgttatttctggggttcttcattccttcatgtaggtctgtacctccat i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I a score=2996050.000000 s hg38.chr5_GL383530v1_alt 22859 281 + 101241 ctgatattaCCACTggctctgctacagctactcagcattgtgctgtggtatagaatcact--catggcagtaaattgagtcaaatgtagggcctactttgtatatttcttattttttggatattactgtcttttgttgcctgatgtcattgtcttaaaaactatagattcacatcatagatttggtctg-tttttgtttttgtggctgttgttgtttcaagtgggaaggtaaatctgattc-----ctgttaccccagtttgttgagaagcaaaag--tctatatatgtgt s panTro5.chr5 20251665 281 + 181907262 ctgatattaCCACTggctctgctacagctactcagcattgtgctgtggcgtagaatcact--catggcagtaaattgagtcaaatgtagggcctactttgtatatttcttatttcttggatattactgtcttttgttgcctgatgtcattgtcttaaaaactatagattcacatcatagatttggtctg-tttttgtttttgtggctgttgttgtttcaagtgggaaggtaaatctgattc-----ctgttaccccagtctgttgagaagcaaaag--tctatatatgtgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20268963 281 + 183735486 ctgatattaCCACTggctctgctacagctactcagcattgtgctgtggcgtagaatcact--catggcagtaaattgagtcaaatgtagggcctactttgtatatttcttattttttggatattactgtcttttgttgcctgatgtcattgtcttaaaaactatagattcacatcatagatttggtctg-tttttgtttttgtggctgttgttgtttcaagtgggaaggtaaatctgattc-----ctgttaccccagtctgttgagaagcaaaag--tctatatatgtgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4754801 282 - 13748885 ctgatattaCCACTggctctgctacagctactcagcattgtgctgtggtgtagaatcact--catggcagtaaattgagtcaaatgtagggcctacttggtatatttcttattttttggatattactgtcttttgttgcctgatgtcattgtcttaaaaactatagattcacatcatagatttggtctgttttttgtttttgtggctgttgttgtttcaagtgggaaggtaaatctgattc-----ctgttaccccagtttgttgagaagcaaaag--tctatatatgtgt i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87817743 281 - 180051392 ctgctattaCCACTggctctgttacagctaatccacattgtgctgtggtgtagaatcact--catggcagtaaactgagtcaaatgtagggcctactttgtatatttcttattttttggatatgactgtcttttgttgcctgatgtcatttacttaaaaactatagattcacatcatagatttggtctg-tttttgtttttgtggctgttgttgtttcaaatgagaaggtaaatctgattc-----ctgttaccccagtttgttgagaagcaaaag--tctcTCTCTCTCT i rheMac8.chr6 C 0 I 1 s macFas5.chr6 87922155 281 - 181584905 ctggtattaCCACTggctctgttacagctaatccacattgtgctgtggtgtagaatcact--catggcagtaaactgagtcaaatgtagggcctactttgtatatttcttattttttggatatgactgtcttttgttgcctgatgtcattgccttaaaaactatagattcacatcatagatttggtctg-tttttgtttttgtggctattgttatttcaaatgagaaggtaaatctgattc-----ctgttaccccagtttgttgagaagcaaaag--tctcTCTCTCTCT i macFas5.chr6 C 0 I 1 s macNem1.NW_012011400v1 1145026 281 - 8785636 ctggtattaCCACTggctctgttagagctaatccacattgtgctgtggtgtagaatcact--catggcagtaaactgagtcaaatgtagggcctactttgtatatttcttattttttggatatgactgtcttttgttgcctgatgtcattgccttaaaaactatagattcacatcatagatttggtctg-tttttgtttttgtggctgttgttgtttcaaatgagaaggtaaatctgatta-----ctgttaccccagtttgttgagaagcaaaag--tctcTCTCTCTCT i macNem1.NW_012011400v1 C 0 I 2 s cerAty1.NW_012002401v1 1613269 277 + 27333823 ctggtattaCCACTggctctgctacagctaatccacattgtgctgtggtgtagaatcact--catggcagtaaactgagtcaaatgtagggcctactttgtatatttcttattttttggatatgactgtcttttgttgcctgatgtcattgccttaaaaactatagattcacatcatagatttggtctg-tttttgtttttgtggc---tgctgtttcaaatgagaaggtaaatctgattc-----ctgttaccccagtttgttgagaagcaaaag--tctcTCTCTCTC- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1883382 277 - 91010382 ctggtattaCCACTggctctgctacagctaatccacattgtactgtggtgtagaatcact--catggcagtaaactgagtcaaatgtagggcctactttgtatatttcttattttttggatattattgtcttttattgcctgatgtcattgccttaaaaactatagattcacatcatagatttggtctg-gtttt-tttttgtggc---tgttgtttcaaatgagaaggtaaatctgattc-----ctgttaccccaatttgttgagaagcaaaag--tctcTCTCTCTCT i chlSab2.chr4 C 0 I 4 s manLeu1.NW_012103732v1 1994370 280 + 5179401 ctggtattaCCACTggctctgctacagctaatccacattgtgctgtggtgtagaatcact--catggcagtaaactgagtcaaatgtagggcctactttgtatatttcttattttttggatatgactgtcttttgttgcctgatgtcattgccttaaaaactatagattcacatcatagatttggtctg-tttttgtttttgtggc---tgctgtttcaaatgagaaggtaaatctgattc-----ctgttaccccagtttgttgagaagcaaaagtctctctctctctct i manLeu1.NW_012103732v1 C 0 I 4 s colAng1.NW_012115488v1 7700204 280 - 21726897 ctagtattaCCACTggctctgctacagctaatccacattgtgctgtggtgtagaatcaca--catggcagtaaactgagtcaaatgtagggcctactttgtatatttcttattttttggatgttactgtcttttgctgcctgatgtcattgcctt-aaaactatagattcacatcatagatttggtctg-tttttgtttttgtggctgttgttgtttcaaatgagaaggtaaatccgattc-----ctgttaccccagtttgttgagaagcaaaat--tctcTCTCTCTCT i colAng1.NW_012115488v1 C 0 I 12 s calJac3.chr2 112521431 270 + 204313951 ctgatattaCCACTggctctgctgcagctactccacattgtgctgtggcgtagaatcact--catggtagtaagttgagtcaaatatagggcctgctttgtatatgttctattttttggatgttactgtcttttgttgcctgatgtcattgtcttaaaaactatagatttacatcagagatttggtctg-ttcttgtttttgtggct---gttatttcatatgaaaaggtaaatctgattc-----ctgctaccccagtttgttgagaagcaaaag--tccat-------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44967215 271 + 71252344 ctgatattaCCACTggctctgctacagctactccacattgtgctgtggcataaaatcact--cgtgacagtaagttgagtcaaatgtagggcctgctttgtatatgttttattttttggatgttactgtattttgttgcctgatgtctttgtctcaaaaactatagatttacatcagaaatttggtctg-tttttgtttttgtggctgtggttatttcagatgaaaaggtaaatctgattc-----ctgttaccctagtttgttgagaagc--aag--tcCAT-------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 331781 273 - 1393929 ctgatattaCCACTggctctgctacagctactccacattgtgctgtggcatagaatcact--catggcagtaagttgagtcaaatgtagggcctgctttgtatatgttttattttttggatgttactgtcttttgttgcctgatgtcattgtcttaaaaactatagatttatattagagatttggtctg-tttttgtttttgtggctgttgttgtttcagatgaaaaggtaaatctgattc-----ctgttaccccagtttgttgagaagcaaaag--tcCAT-------- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1408194 273 - 15889662 ctgatattaCCACTggctctgctacagccactccacattgtgctgtggcgtagaatcact--catggcagtaagttgagtcaaatgtagggcctgctttgtatatgttttattttttggttgttactgtcttttgttgcctgatgtcattgtcttaaaaactatagatttacatcagagatttggtctg-tttttgtttttgtggctgttgttatttcatttgaaaaggtaaatctgattc-----ctgttaccccagtttgttaagaagcaaaag--tccat-------- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84820531 269 + 108143057 ctggtatTGCCACCAG-GCTACTACAGATActcctctttgtgcggtggcctggaatctcctctaaggcagtaagttgtgtcaatta--gggactattttgtatattttttatctttcagggatgactgttttttgttgcctgctgtctttgtcttagaaactattgtttcatatcatatatttggtctg-tttttgtttttgtagctattgtttcttcagatgggaaggtaaatctgattc-----ttgttacctcaacttttcaagaagcagaag--tc----------- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 583121 274 - 10520994 ctggtattaCCACCAA-GCTGCTACAGATAcccctacttgtgctctggtctggaatctctcccaaggcagtaagttgggtcaatta--gagactactttctatatttcttgtcattcagggatgactgtcttttgttgcctgctgtccttgtcttaaaaactattgtttcatatcatatatttggtctg-tttttgtttttgtggctattgtttcttcaaatgggaaggtaaatctgattcctcaacttttacctcaacttctccagaagcagaag--tc----------- i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1291182 266 - 29863360 ctgatattaCCACCAG-GCTGCCACAGACATGTctccttgagctgtggcctggaatctctctcacggcagtaagttggctcagttct-aggacgactttgtatatttcttggctttcagggattactaccttttgttgcttgctgtctttgtcttaaaaactattgtttcatatcatatat----tcta-attttgtttatgtggctattgcttcttcatttgggaaggtaaatctgattc-----ctgttaccccaacttttccagaagcagaag--tc----------- i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I e nomLeu3.chr2 53790103 151 - 163208435 I a score=2203641.000000 s hg38.chr5_GL383530v1_alt 23140 178 + 101241 atatatatatatatCCTTATCCATCAGTTTTCTTATGAGTGGATTTGGCTTCAAATTGCTATTAGTTACTTAGGTGTTATACATAATATTCATGATCATTAAAATCATCTTTATTACCATAAATGTGTGAAGATATTCTaagtgtatagagctgtttatgcact-aaatggccctacat s panTro5.chr5 20251946 176 + 181907262 atatatatatat--CCTTATCCATCAGTTTTCTTATGAGTGGATTTGGCTTCAAATTGCTATTAGTTACTTAGGTGTTATACATAATATTCATGATCATTAAAATCATCTTTATTACCATAAATGTGTGAAGATGTTATaagtgtatagagctgtttatgcact-aaatggccctacat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20269244 176 + 183735486 atatatatatat--CCTTATCCATCAGTTTTCTTATGAGTGGATTTGGCTTCAAATTGCTATTAGTTACTTAGGTGTTATACATAATATTCATGATCATTAAAATCATCTTTATTACCATAAATGTGTGAAGATGTTATaagtgtatagagctgtttatgcact-aaatggccctacat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755083 178 - 13748885 gtatatatatatatCCTTATCCATCAGTTTTCTTATGAGTGGATTTGGCTTCAAATTGCTATTAGTTACTTACGTGTTATACATAATATTCATGATCATTAAAATCATCTTTATTACCATAAATGTGTGAAGATATTATaagtgtatagagctgtttatgcact-aaatgaccctacat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53790254 178 - 163208435 acacacaTATATATCCTTATCCATCAGTTTTCTTATGAGTGAATTTGGCTTCAAATTGCTATTAGTTACTTAGGTGTTATACATGATATTCATGATCATTAAAATCATCTTTATTACTATAAATGTGTGAAGATGTTATaggtgtatagagctgtttatacact-aaatggccctacgt i nomLeu3.chr2 I 151 C 0 s rheMac8.chr6 87818025 173 - 180051392 -TCTATATATATATCCTTATCCATCAGTTTTCTTATGAGTGGATTTGGCTTCAAATTGCTATCAGTTACTTAGGTGTTATACATAATATTCATGATCATTAAAATCA----TATTACTATAAATGTCTGAAGATGTTATAAGTATATAGAGCTGTTTATGCACT-AAATGGCCCTATGT i rheMac8.chr6 I 1 C 0 s macFas5.chr6 87922437 173 - 181584905 -TCTATATATATATCCTTATCCATCAGTTTTCTTATGAGTGGATTTGGCTTCAAATTGCTATCAGTTACTTAGGTGTTATACATAATATTCATGATCATTAAAATCA----TATTACTATAAATGTCTGAAGATGTTATAAGTATATAGAGCTGTTTATGCACT-AAATGGCCCTATGT i macFas5.chr6 I 1 C 0 s macNem1.NW_012011400v1 1145309 174 - 8785636 ATATATATATATATCCTTATCCATCAGTTTTCTTATGAGTGGATTTGGCTTCAAATTGCTATCAGTTACTTAGGTGTTATACATAATATTCATGATCATTAAAATCA----TATTACTATAAATGTCTGAAGATGTTGTAAGTATATAGAGCTGTTTATGCACT-AAATGGCCCTATGT i macNem1.NW_012011400v1 I 2 C 0 s cerAty1.NW_012002401v1 1613546 173 + 27333823 -TATATATATATATCCTTATCCATCAGTTTTCTTATGAGTGGATTTGGCTTCAAATTGCTATCAGTTACTTAGGTGTTATACATAATATTCATGATCATTAAAATCA----TATTACTATAAATGTCTGAAGATGTTATAAGTATATAGAGCTGTTTATGCACT-AAATGGCCCTATGT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1883663 174 - 91010382 ATATATATATATATCCTTATCCATCAGTTTTCTTATGAGTGGATTTGGCTTCAAATTGCTATTAGTTACTTAGGTGTTATACATAATATTCATGATCATTAAAATCA----TATTACTATAAATGTCTGAAGATGTTATaagtgtatagagctgtttatgcact-aaatggccctatat i chlSab2.chr4 I 4 C 0 s manLeu1.NW_012103732v1 1994654 174 + 5179401 ctATATATATATATCCTTATCCATCAGTTTTCTTATGAGTGGATTTGGCTTCAAATTGCTATCAGTTACTTAGGTGTTATACATAATATTCATGATCATTAAAATCA----TATTACTATAAATGTCTGAAGATGTTATAAGTATATAGAGCTGTTTATGCACT-AAATGGCTCTATGT i manLeu1.NW_012103732v1 I 4 C 0 s colAng1.NW_012115488v1 7700496 173 - 21726897 atatatatgtatatCCTTACCCATCAG-TTTCTTATGGGTGGATTTGGCTTCAAATTGCTATTAGTTACTTAGGTGTTCTACATTATATTCATGATCATTAAAATCA----TATTACTGTAAATGTCTGAAAATGTTATaagtgtatagagctgtttatgcact-aaatggccctatgt i colAng1.NW_012115488v1 I 12 C 0 s calJac3.chr2 112521701 172 + 204313951 atatatatATATGTCCTCATCCATCAGTTTTCTTATGAGTGGATTTGGCTTCAAATCGCTATTAGTTATTTAGGTGTTATACATAATATTCATGATCATCAAAATCTT------TACTATAAATGTGTGAAGATGTTATAAGTATACAGGGCTGTTTATATACT-AAATGGCCCTATGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44967486 176 + 71252344 ATATACATATA--TCCTCATCCATCAGTTTTCTTATGAGTGGATTGGGCTTCACATTGCTATTAGTTACTTAGGTGTTGTACATAATGTTCATGATCATCAAAATCATCTTTACTACTATAAATGTGTGAAGATGTTATAAGTGTACAGAGCTGTTTATATACT-AAATGACCCTACGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332054 175 - 1393929 ATATATATATATATCCTCATCCATCAGTTTTCTTATGAGTGGATTTGGCTTCAAGTTGTTATTAATTACTTAGGTGTTATACGTAATATTCATGATCATCAAAATCATCTT---TACTATAAATGTGTGAAGATGTTATaggtgtacagagctgtttatatact-aaatggccctacgt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1408467 174 - 15889662 atatatatA----TCCTCATCCATCAGTTTTCTTATGAGTGGATTTGGCTTCAAATTGCTATTAGTTACTTAGGTATTATACATAATATTCATGATCATCAAAATCATCTTTACTACTATAAATGTGTGGAGATGTTATaagtgtacagagctgtttatatact-aaatggccctacgt i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84820800 177 + 108143057 -GATATAAATGCATCTTTATCCATCAGTTTTCTTATAAGTGGATTTGGCTTCAAATTGCTATTAGTTACTTATGTATAATACATAATTTTTATGATAGTTAAAATCAGCTTTATTATAATAAATATGTGAAGATGTTATAAGTGTATAGAGCTATTTATTTACT-AAATGGTCCTAAAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 583395 173 - 10520994 -CATATAAATACATCTCTGTCCATCAGTTTTCTTATAAGTGGATTTGGCTTCAAATTGCTATTAGTTACTTATGTGTAATACATAATTCTTATGATAGTTAAAATCATCTTTATTAT----AATATGTGAAGATGTTATAAGTGTATAGAGGTGTTTATTTACT-AAATGGTCCTAAGT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1291448 173 - 29863360 -CATATAAGTATATCTCT----ATCAGTTTTCTTATAAATAGATTTGGCTTCAAATTGCTATTATTTACTTATGTGTAATACATAGTTTTCATGATAG-GAAAATCTTTTTCCTTATAATAAACTTGTGATGATGTTGTAAGTCTATAGGGCCATTTGTGTGCTAAAATGGCCTTAAGC i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e dasNov3.JH570378 1217346 4191 - 11655695 I e mm10.chr13 76441096 716 + 120421639 I a score=111156.000000 s hg38.chr5_GL383530v1_alt 23318 12 + 101241 tactccactttt s panTro5.chr5 20252122 12 + 181907262 tactccactttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20269420 12 + 183735486 tactccactttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755261 12 - 13748885 tactccactttt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53790432 12 - 163208435 tactccactttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87818198 11 - 180051392 TACTCTAC-TTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87922610 11 - 181584905 TACTCTAC-TTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1145483 11 - 8785636 TACTCTAC-TTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1613719 11 + 27333823 TACTCTAC-TTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1883837 11 - 91010382 tactctac-ttt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1994828 11 + 5179401 TACTCTAC-TTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7700669 11 - 21726897 tactctac-ttt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112521873 12 + 204313951 TACTCTAGTTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44967662 12 + 71252344 TACTCTAGTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332229 12 - 1393929 tactctagtttt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1408641 12 - 15889662 tactctagtttt i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84820977 12 + 108143057 TACTCCAGCTTT i micMur3.chr12 C 0 I 108 s proCoq1.NW_012147189v1 583568 12 - 10520994 TACTTCAGATTT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1291621 11 - 29863360 TACTCCAGTTT- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76441812 12 + 120421639 TATTCCAGTTTT i mm10.chr13 I 716 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e dasNov3.JH570378 1217346 4191 - 11655695 I a score=34160.000000 s hg38.chr5_GL383530v1_alt 23330 3 + 101241 tga s panTro5.chr5 20252134 3 + 181907262 tga i panTro5.chr5 C 0 C 0 s panPan2.chr5 20269432 3 + 183735486 tga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755273 3 - 13748885 tga i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53790444 3 - 163208435 tca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87818209 3 - 180051392 TGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87922621 3 - 181584905 TGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1145494 3 - 8785636 TGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1613730 3 + 27333823 TGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1883848 3 - 91010382 tga i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1994839 3 + 5179401 TGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7700680 3 - 21726897 tga i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112521885 3 + 204313951 TAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44967674 3 + 71252344 TGa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332241 3 - 1393929 tga i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1408653 3 - 15889662 tga i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 583580 2 - 10520994 -TA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1291632 3 - 29863360 TGA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76441824 3 + 120421639 TGA i mm10.chr13 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84820989 108 + 108143057 I e dasNov3.JH570378 1217346 4191 - 11655695 I a score=142198.000000 s hg38.chr5_GL383530v1_alt 23333 10 + 101241 attattTTTA s panTro5.chr5 20252137 10 + 181907262 attattTTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20269435 10 + 183735486 attattTTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755276 10 - 13748885 attattTTTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53790447 10 - 163208435 gttgttTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87818212 10 - 180051392 ATTATTTTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87922624 10 - 181584905 ATTATTTTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1145497 10 - 8785636 ATTATTTTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1613733 10 + 27333823 ATTATTTTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1883851 10 - 91010382 attattttgA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1994842 10 + 5179401 ATTATTTTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7700683 10 - 21726897 attattTTTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112521888 10 + 204313951 attattttta i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44967677 10 + 71252344 attattttta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332244 10 - 1393929 attattTTTA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1408656 10 - 15889662 attattTTTA i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 583582 10 - 10520994 ATTATTGTTA i proCoq1.NW_012147189v1 C 0 I 109 s otoGar3.GL873536 1291635 10 - 29863360 ATTATTATCA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76441827 10 + 120421639 ATTATGTTTA i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1221537 10 - 11655695 atcataTTTG i dasNov3.JH570378 I 4191 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84820989 108 + 108143057 I a score=1260500.000000 s hg38.chr5_GL383530v1_alt 23343 113 + 101241 TTTAAAAATTTTCAGTCTTTCAGTGACATTTAGGAAATGTCCCAGTG-TTCACTGTATGCAAAAAGCAA-TAAAATGATTACTGAAAACAATATTGTCCCTTGCTATTGGTAAAA s panTro5.chr5 20252147 113 + 181907262 TTTAAAAATTTTCAGTCTTTCAGTGACATTTAGGAAATGTCCCAGTG-TTCACTGTATGCGAAAAGCAA-TTATATGATTACTGAAAACAATATTGTCCCTTGCTATTGGTAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20269445 113 + 183735486 TTTAAAAATTTTCAGTCTTTCAGTGACATTTAGGAAATGTCCCAGTG-TTCACTGTATGTGAAAAGCAA-TTATATGATTACTGAAAACAATATTGTCCCTTGCTATTGGTAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755286 113 - 13748885 TTTAAAAATTTTCAGTCTTTCAGTGACATTTAGGAAATGTCCCAGTG-TTCACTGTATGCAAAAAGCAA-ATATATGATTACTGAAAACAATATTGTCCCTTGCTATTGGTAAAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53790457 113 - 163208435 TTTAAAAATTTTCAGTCTTTCAGTGACATTTAGGAAATGTTCCAGTG-TTCACTGTATGCAAAAAGCAA-TTATATGATTACTGAAAACAATATTGTCCCTTGCTATTGGTAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87818222 113 - 180051392 TTTAAAAATTTTCAATCTTTCAGTGACATTTAGGAAATGTTCCAGTG-TTCACTGTATGCAAAGAGCAA-TTATATGATTACTGAACACAATATTGTCCCTTGCTATTGGTGAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87922634 113 - 181584905 TTTAAAAATTTTCAATCTTTCAGTGACATTTAGGAAATGTTCCAGTG-TTCACTGTATGCAAAGAGCAA-TTATATGATTACTGAACACAATATTGTCCCTTGCTATTGGTGAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1145507 113 - 8785636 TTTAAAAATTTTCAATCTTTCAGTGACATTTAGGAAATGTTCCAGTG-TTCACTGTATGCAAAGAGCAA-TTATATGATTACTGAACACAATATTGTCCCTTGCTATTGGTGAAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1613743 113 + 27333823 TTTAAAAATTTTCAATCTTTCAGTGACATTTAGGAAATGTTCCAGTG-TTCACTGTATGCAAAGAGCAA-TTATATGATTACTGAACACAATATTGTCCCTTGTTATTGGTGAAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1883861 113 - 91010382 TTTAAAAATTTTCAATCTTTCAGTGACATTTAGGAAATGTTCCAGCG-TTCACTGTATGCAAAGAACAA-TTATATGATTACTGAACACAATATTGTCCCTTGCTATTGGCGAAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1994852 113 + 5179401 TTTAAAAATTTTCAATCTTTCAGTGACATTTAGGAAATGTTCCAGTG-TTCACTGTATGCAAAGAGCAA-TTATATGATTACTGAACACAATATTGTCCCTTGTTATTGGTGAAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7700693 113 - 21726897 TTTAAAAATCTTCAGTCTTTCAGTGACATTTAGGAAATGTTCCAGTG-TTCACTGTATGCAAAGAGCAA-TTATATGATTACTGAACACAATATTGTCCCTTGCTATTGCTGAAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112521898 112 + 204313951 tttaaaatttttCAGTCTTTCAGTGACATTTAGGAAATGTTCCA-TG-TTTACTGTATGCAAA-AACAATTTATATGATTACTGAAAACAATACTGTCCCTTGCTATTGGTAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44967687 114 + 71252344 tttaaaaattttCAGTCTTTTAGTGACATTTAGGAAATGTTCCAGTG-TCTACTGTATGCAAAGAGCAATTTACATGATTACTGGAAACAGTACCGTCCCTTGCTATTGGTAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332254 114 - 1393929 TTTAAAAATTTTCAGTCTTTCAGTGACATTTAGGAAATGTTCCAGTG-TTTACTGTATGCAAAGAGCAATTTATATGATTACTGAAAACAATACTGTCCCTTGCTATTGGTAAAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1408666 114 - 15889662 TTTAAAAATTTTCAGTCTTTCAGTGACATTTAGGAAATGTTCCAGTG-TTTACTGTATACAAAGAGCAATTTATATGATTACTGAAAACAATACTGTCCTTTGCTATTGGTAAAA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1291645 110 - 29863360 TTTAAGCTTTCTCCAATGTTTAGTGACATCCATAGCATGTTTGAGTG-CCTCCTGTATGCG-AGAGCAG-TAAGGAGATTTCTGAAGA-AGGACTGCCACCTGCTCTGGGTTCA- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76441837 97 + 120421639 ---------TTTTAGTCTTTAAATGACATTTCGGAAATGTGCAAATG-CCTACTATGTGCAAAGATAAA----TAAAGTTCCTGAAGAGAACA---TCTTTTGTCATTGTTACG- i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1221547 111 - 11655695 TTTAATTTTTAAAAATCTTTCATTGACATTTCGAAAATAATTGGGTGCCTTACTTTGTTGAAAGAACTA-TTGTGAGACTATTAAAGATAATA---TCCCTAGCTACTGATTAAA i dasNov3.JH570378 C 0 I 5 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84820989 108 + 108143057 I e proCoq1.NW_012147189v1 583592 109 - 10520994 I a score=4410941.000000 s hg38.chr5_GL383530v1_alt 23456 300 + 101241 CTTCTCTAACAGCAATGTCAATAGCCATTTCC----------------ATCCTCTACCTCTATTTGCATTCTCCATGAACTGTTTGAAATGTTCCTTCTA-TTAAGAG---------CAACATTTCCACATAAGATT-AAAAATCTAAACGATGGGAA-G---TTTTTTTCAGCATGTGCTAATGGGAAATTATGAACGAACTAAGTATAGA----------ATTTCAG--------TTT----AAAAAAAAGGTGTGTGGGGATGTTCTTACAGCTGTCAGTGTCAATTCACGTCAAATTCA---CTTCATTGAAGTTTAAGTTTTTC--AGAAAATGTATTTCTTGTGGATATACC s panTro5.chr5 20252260 300 + 181907262 CTTCTCTAACAGCAATGTCAATAGCCATTTCC----------------ATCCTCTACCTCTATTTGCATTCTCCATGAACTGTTTGAAATGTTCCTTCTA-TTAAGAG---------CAACATTTCCACATAAGATT-AAAAATCTAAACGATGGGAA-G---TTTTTTTCAGCATGTGCTAATGGGAAATTATGAACGAACTAAGTATAGA----------ATTTCAG--------TTT----AAAAAAAAGGTGTGTGGGGATGTTCTTATAGCTGTCAGTGTCAATTCACATCAAATTCA---CTTCATTGAAGTTTAAGTTTTTC--AGAAAATGTATTTCTTGTGGATATACC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20269558 300 + 183735486 CTTCTCTAACAGCAATGTCAATAGCCATTTCC----------------ATCCTCTACCTCTATTTGCATTCTCCATGAACTGTTTGAAATGTTCCTTCTA-TTAAGAG---------CAACATTTCCACATAAGATT-AAAAATCTAAACGATGGGAA-G---TTTTTTTCAGCATGTGCTAATGGGAAATTATGAACGAACTAAGTATAGA----------ATTTCAG--------TTT----AAAAAAAAGGTGTGTGGGGATGTTCTTATAGCTGTCAGTGTCAATTCACATCAAATTCA---CTTCATTGAAGTTTAAGTTTTTC--AGAAAATGTATTTCTTGTGGATATACC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755399 299 - 13748885 CTTCTCTAACAGCAATGTCAATAGCCATTTCC----------------ATCCTCTATCTCTATTTGCATTCTCCATGAATTGTTTGAAATGTTCCTTCTA-TTAAGAG---------CAACATTTCCACATAAGATT-AAAAATCTAAACGATAGGAA-G---TTTTTTTCAGCATGTGCTAATGGGAAATTATGAACGAACTAAGTATAGA----------ATTTC-G--------TTT----TAAAAAAAGGTGTGTGGGGATGTTCTTACAGCTGTCAGTGTCAATTCACATCAAATTCA---CTTCATTGAAGTTTAAGTTTTTC--AGAAAATGTATTTCTTGTGGATATACC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53790570 301 - 163208435 CTTCTCTAACAGCAatctcaatagccatttcc----------------atcctctacctctatttgcattctccatGAACTGTTTGAAATGTTCCTTCTA-TTAAGAG---------CAACATTTCCAGATAAGATT-AAAAATCTAAATGATGGGAAGG---TTTTTTCCAGCATGTGCTAATGGGAAATTATGAACGAACTAAGTATAGA----------ATTTCAG--------TTT----AAAAAAAAGGTGTGTGGGGATGTTCTTACAGCTGTCAGTGTCAATTCACATCAAATTCA---CTTCACTGAAGTTTAAGTTTTTC--AGAAAATGTATTTCTTGTGGATATACC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87818335 302 - 180051392 CTTCTCTAACAGCAATGTCAATAGccatttcc----------------atcttctacctctatttgcattctccatGAACTGTTTGAAATGTTCCTTCTG-TTAAGAG---------CAACATTTCCAGATAAGATT-AAAAATCTAAATGATGGGAA-G---TTTTTTTCAGTATGTGCTAATGGGAAATTATGAACGAACTAAGTATAGA----------ATTTCAG---------TT----AAAAAAAAGGTGTGTGGGGATGTTCTTACAGCTGTCAGTGTCAATTGACATCAAATTCACTTCTTCATTGAAGTTTAAGTTTTTC--AGAAAATGTATTTCTTTTGCATATACC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87922747 302 - 181584905 CTTCTCTAACAGCAATGTCAATAGccatttcc----------------atcttctacctctatttgcattctccatGAACTGTTTGAAATGTTCCTTCTG-TTAAGAG---------CAACATTTCCAGATAAGATT-AAAAATCTAAATGATGGGAA-G---TTTTTTTCAGTATGTGCTAATGGGAAATTATGAACGAACTAAGTATAGA----------ATTTCAG---------TT----AAAAAAAAGGTGTGTGGGGATGTTCTTACAGCTGTCAGTGTCAATTGACATCAAATTCACTTCTTCATTGAAGTTTAAGTTTTTC--AGAAAATGCATTTCTTTTGCATATACC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1145620 302 - 8785636 CTTCTCTAACAGCAATGTCAATAGccatttcc----------------atcttctacctctatttgcattctccatGAACTGTTTGAAATGTTCCTTCTG-TTAAGAG---------CAACATTTCCAGATAAGATT-AAAAATCTAAATGATGGGAA-G---TTTTTTTCAGTATGTGCTAATGGGAAATTATGAACGAACTAAGTATAGA----------ATTTCAG---------TT----AAAAAAAAGGTGTGTGGGGATGTTCTTACAGCTGTCAGTGTCAATTGACATCAAATTCACTTCTTCATTGAAGTTTAAGTTTTTC--AGAAAATGCATTTCTTTTGCATATACC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1613856 302 + 27333823 CTTCTCTAACAGCAATGTCAATAGccatttcc----------------atcttctacctctatttgcattctccatGAACTGTTTGAAATGTTCCTTCTG-TTAAGAG---------CAACATTTCCAGATAAGATT-AAAAATCTAAATGATGGGAA-G---TTTTTTTCAGTATGTGCTAATGGGAAATTATGAACGAACTAAGTATAGA----------ATTTCAG---------TT----AAAAAAAAGGTGTGTGGGGATGTTCTTACAGCTGTCAGTGTCAATTGACATCAAATTCACTTCTTCATTGAAGTTTAAGTTTTTC--AGAAAATGCATTTCTTTTGCATATACT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1883974 302 - 91010382 CTTCTCTAACAGCAATGTCAATAGccatttcc----------------atcttctacctctatttgcattctccatGAACTGTTTGAAATGTTCCTTCTG-TTAAGAG---------CAACATTTCCAGATAAGATT-AAAAATCTAAATGATGGGAA-T---TTTTTTTCAGTATGTGCTAATGGGAAATTATGAACGAACTAAGTATAGA----------ATTTCAG---------TT----AAAAAAAAGATGTGTGGGGATGTTCTTACAGCTGTCAGTGTCAATTGACATCAAATTCACTTCTTCATTGAAGTTTAAGTTTTTC--AGAAAATATATTTCTTTTGCATATACC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1994965 303 + 5179401 CTTCTCTAACAGCAATGTCAATAGccatttcc----------------atcttctacctctatttgcattctccatGAACTGTTTGAAATGTTCCTTCTG-TTAAAAG---------CAACATTTCCAGATAAGATT-AAAAATCTAAATGATGGGAAGT---TTTTTTTCAGTATGTGCTAATGGGAAATTATGAACGAACTAAGTATAGA----------ATTTCAG---------TT----AAAAAAAAGGTGTGTGGGGATGTTCTTACAGCTGTCAGTGTCAATTGACATCAAATTCACTTCTTCATTGAAGTTTAAGTTTTTC--AGAAAATGCATTTCTTTTGCATATACC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7700806 302 - 21726897 CTTCTCTAACAGCAATGTCAATAGccatttcc----------------atcttctacctctatttgcattctccatGAACTGTTTGAAATGTTCCTTCTG-TTAAGAG---------CAACATTTCCAGATAAGATT-AAAAATCTAAATGATGGGAA-G---TTTTTTTCAGTATGTGATAATAGGAAATTATGAACGAACTAAGTATAGA----------ATTTCAG---------TT----AAAAGAAAGGTGTGTGGGGATGTTCTTACAGCTGTCAGTGTCAATTGACATCAAATTCACTTCTTCATTGAAGTTTAAGTTTTTC--AGAAAATGTATTTCTTTTGCATATACC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522010 302 + 204313951 CTTCTCTAACAGCAATGTCAATAGCCATTTCC----------------ATCCTCTACCCCTATTTCCATTCTCCATGAACTGTTTGAAATGTTCCTTCTA-TTAAGAG---------CAACATTTCCAGATAAGATTAAAAAATCGAAATGATGATAA-G---TTTTTTTCAGCATGTGCTAATGGGAAATTCTGAACGAACTAAGTATAGA----------ATTTCAG---------TT----AAAAAAAAGGTGTGTGGGGATGTTCTTACAGTTGTCAGTGTCAATTCACATCAAATTCACTTCTTCATTGAAGTTTAAGTTTTTC--AGAAAAT-TATTTCTTGTGTATATAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44967801 301 + 71252344 CTTCTCTAACAGCAGTGTAAATAGCCATTTCC----------------ATCTTCTACCCCTATTTCCATTCTCCATGAACTGTTTGAAATGTTCCTTCTA-TTAAGAG---------CAACATTTCCAGATAAGATT-AAAAATCTAAATGATGATAA-G---CTTTTTTCAGCATGTGCTAATGGGAAATTCTGAACGAACTAAATATAGA----------ATTTCAG---------TT----AAAAAAAAGGTGTGTGGGGATGTTCTTACAGTTGTCAGTGTCAATTCACATCAAATTCACTTCTTCATTGAAGTTTAAGTTTTTC--AGAAAAT-TATTTCTTGTGTATATAGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332368 304 - 1393929 CTTCTCTAACAGCAATGTCGATAGCCATTTCC----------------ATCCTCTACCCC-ATTTCCATTCTCCATGAACTGTTTGAAATGTTCCTTCTA-TTAAGAG---------CAACATTTCCAGATAAGATT-AAAAATCTAAATGATGATAA-G---TTTTTTTCAGCGTGTGCTAATGGGAAATTCTGAACGAACTAAGTATAGA----------ATTTCAG---------TTAAAAAAAAAAAAGGTGTGTGGGGATGTTCTTACAGTTGTCAGTGTCAATTCACATCAAATTCGCTTCTTCATTGAAGTTTAAGTTTTTC--AGAAAAT-TATTTCTTGTGTATATAGT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1408780 301 - 15889662 CTTCTCTAACAGCAATGTCAATAGCCATTTCC----------------ATCCTCTACCCCTATTTCCATTCTCCATGAACTGTTTGAAATGTTCCTTCTA-TTAAGAG---------CAACATTTCCAGATAAGATT-AAAAATCTAAATCATGATAA-G---TTTTTTTCACTGTGTGCTAATGGGAAATTCTGAACGAACTAAGTATAGA----------ATTTCAG---------TT----AAAAAAAAGGTGTGTGGGGATGTTCTTACAGTTGTCAGTGTCAATTCACATCAAATTCACTTCTTCATTGAAGTTTAAGTTTTTC--AGAAAAT-TATTTCTTGTGTATATAGT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84821097 313 + 108143057 CTTCTCTAGTAGCAGTGTCAATAGCCATTTCA----------------ATCCCCTACCGCAATCTCTGTTCTCCACAAACAGTTTGAAAATTTGCTTTTA-TTAAGAG---------CAACGTTTCCAGATAAGATT---AAATCTAAAGGATGGTAA-G---TTTTTTTCAACATGTGCTAATGAGAAATTATGAAAGAACTAAGTATAGAATTTCAGTTTATTTCAG--------TTT----AAATAAAAGGTGTGTGGGGATGTTCTTACAGCTGTCAGTGTCAATTCACATCAAATTCACTTCTTCATTGAAGTTAAAGTTTTTCAAAAAAAATATATTTCTTGTGCATATACT i micMur3.chr12 I 108 C 0 s proCoq1.NW_012147189v1 583701 300 - 10520994 CTTCTCTAGTAGCAGTGTCAATAGCCATTTCA----------------ATCCTCTACCCCAATCTCTGTTCTCTACAAACAGTTTGAAATTTTGCTTTTA--TGAGAG---------CAACATTTCCAGATAAGATT---AAATCTAAAGGATGGTAA-G---TTTTTTTCAACATGTGCTAATGAGAAATTATGAAAGAACTAAGTATAGA----------ATTTCAG--------TTT----AAATAAAAGGTGTGTGGGGATGTTCTTACAGCTGTCAGTGTCAATTCACATCAAATTCACTTCTTCATTGAAGTTAAAGTTTTTC--AAAAAATGTATTTCTTGTGCATATACT i proCoq1.NW_012147189v1 I 109 C 0 s otoGar3.GL873536 1291755 315 - 29863360 CTTCTCTAGTGGCAGTGGCACTGGCCATTCAATGAGACTTGGGTAGACTTCCTCTACCCAAGTCTCTGTTCTCCATGC----TTTGAAATTTTGCTTTTA-ATAAGAG---------CAAAGTTTCCACATAAGATG---AATTCTAAAAGAAGGTAA-GTTTTTTTTTTCAGCATGTGCTAATGAGAAATTATGAGAGAACTAAGTATAGA----------ATTTTAG-------TTTT----TAAAAGAAGGTGTGTGGGGATGTTCTTACAGATGTCAGTGTCACTTCACATCAAATTCACTTCTTCATTG-AGTTTGAGTTTTA---GGAAAATAGATTTCTTGTGCATATACT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76441934 291 + 120421639 TTCCTTAAGAAGCAGCATC--CAGACATCT------------------ATTCCTTACCAATTTTT---TTTACCACAAACATTTTGAAAGTTTGCTTCTATTTAAGAT---------CAACATTTCCAAGTGACATT---AAATCCAAGTTATGGTGA-G---AATTTCTCATCACATGTCAATGAGAGATTACGAA--GATTAAATATAGA----------ATTTCAG---------CT----TAGAAAAAGGTGTGTGGGGATGTTCTTACAGCTGACAGTGTCAGTTTGCATCAAGTTCACTCCTTAAGTAAAATTTAAGTTTT-C--AGAAACTGTGTTTTTTGCACATATGCT i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1221663 298 - 11655695 TTCCCCTAGTGGGAGTTTCAATAATGATTTTCT---------------GTTTTCTTCCACCATGCCCATTCTCCACAAACAGCTTGACGTTTTGCTTTTA-TTAAAAGTATGAAAACCAGTGCTTACAGATAAGATT---GAATCTAAGTTATGACAA-G----TTTTTCCATCATGTTCTGATGAGAGATAATGAAGGAACTAATTATAGA----------GTTTTAGTCAAATTTTTT----AAAAAAAGGG----------------TAGAGTTGTCAATGTGAATTGGCATCAGAGTGA---ACTCACTGAAGTTTAGGTTTT-C--AGAAATTTTATTTCTTTGGCACACAGT i dasNov3.JH570378 I 5 C 0 e canFam3.chr3 14301556 4682 + 91889043 I a score=84094.000000 s hg38.chr5_GL383530v1_alt 23756 5 + 101241 GATTA s panTro5.chr5 20252560 5 + 181907262 GATTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20269858 5 + 183735486 GATTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755698 5 - 13748885 GATTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53790871 5 - 163208435 GATTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87818637 5 - 180051392 GATTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923049 5 - 181584905 GATTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1145922 5 - 8785636 GATTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614158 5 + 27333823 GATTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884276 5 - 91010382 GATTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1995268 5 + 5179401 GATTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7701108 5 - 21726897 GATTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522312 5 + 204313951 GATTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44968102 5 + 71252344 GATTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332672 5 - 1393929 GATTA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1409081 5 - 15889662 GATTA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84821410 5 + 108143057 GATTA i micMur3.chr12 C 0 I 62 s proCoq1.NW_012147189v1 584001 5 - 10520994 GATTA i proCoq1.NW_012147189v1 C 0 I 76 s mm10.chr13 76442225 5 + 120421639 GATTA i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1221961 5 - 11655695 GAATA i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e otoGar3.GL873536 1292070 0 - 29863360 C a score=201914.000000 s hg38.chr5_GL383530v1_alt 23761 22 + 101241 AA-----------ACccatatatgcctagtgtt s panTro5.chr5 20252565 22 + 181907262 AA-----------ACccatatatgcctagtgtt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20269863 22 + 183735486 AA-----------ACccatatatgcctagtgtt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755703 22 - 13748885 AA-----------ACccatatatgccttgtgtt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53790876 22 - 163208435 AA-----------ACccatatatgcttagtatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87818642 22 - 180051392 AA-----------ACccatatatgcctagtgtc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923054 22 - 181584905 AA-----------ACccatatatgcctagtgtc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1145927 22 - 8785636 AA-----------ACccatatatgcctagtgtc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614163 22 + 27333823 AA-----------ACCCTTAtatgcctagtgtc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884281 33 - 91010382 AAACCCATATATGACccatatatgcctagtgtc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1995273 22 + 5179401 AA-----------ACccatatatgcctagtgtc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7701113 22 - 21726897 AA-----------ACccatatatgcctcgtgtc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522317 22 + 204313951 AA-----------ACccatatatacctagtatt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44968107 22 + 71252344 AA-----------ACccatatatacctagtatt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332677 22 - 1393929 AA-----------ACccatatatacctagcatt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1409086 22 - 15889662 AA-----------ACccatatatacctagtatt i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76442230 22 + 120421639 GA-----------AGTGAGATTTGGGTACTTTT i mm10.chr13 C 0 I 186 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84821415 62 + 108143057 I e proCoq1.NW_012147189v1 584006 76 - 10520994 I e dasNov3.JH570378 1221966 0 - 11655695 C e otoGar3.GL873536 1292070 0 - 29863360 C a score=796007.000000 s hg38.chr5_GL383530v1_alt 23783 82 + 101241 ccattatcagaacgctaaacatgtgggagttatttatatcctgctgctcaaggtcattgccaaggtctgactgcaaaaattc s panTro5.chr5 20252587 82 + 181907262 ccattatcagaacgctaaacatatgggagttacttatatcctgctgctcaaggtcattgccaaggtctgactgcaaaaattc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20269885 82 + 183735486 ccattatcagaacgctaaacatatgggagttacttatatcctgctgctcaaggtcattgccaaggtctgactgcaaaaattc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755725 82 - 13748885 ccattatcagaacgctaaacatgtgggagttatttatatcctgctgctcaaggtcattgccaaggtctgactgcaaaaattc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53790898 82 - 163208435 ccattatcagaacgctaaacatgtgggagttatttatatcctgatgctcgaggtcattgccaaggtctgactgcaaaaatta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87818664 82 - 180051392 ccattattggagcactaaacatataggagttatttatatcctgctgctcaaggtcattgccaaggtctgattgcaaaaattc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923076 82 - 181584905 ccattattggagcactaaacatataggagttatttatatcctgctgctcaaggtcattgccaaggtctgattgcaaaaattc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1145949 82 - 8785636 ccattattggagcactaaacatataggagttatttatatcctgctgctcaaggtcattgccaaggtctgattgcaaaaattc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614185 82 + 27333823 ccattattggagtgttaaacatataggagttatttatagcctgctgctcaaggtcattgccaaggtctgattgcaaaaattc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884314 82 - 91010382 ccattattggagcgctaaacatgtaggagttatttatatcctgctgctcaaggtcattgccaaggtctgattgcaaaaattc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1995295 82 + 5179401 ccattattggagtgctaaacatataggagttatttatatcctgctgctcaaggtcgttgccaaggtctgattgcaaaaattt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7701135 82 - 21726897 ccactattggagtgctaaacttgtaggagttatttatatcctgctgctcaaggtcattgccaaagtctgatggcaaaaattc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522339 82 + 204313951 tcattattggaatgctaagcatgtgggtgttatttatgtcctgctgctcatggtcattgtcaagatctgattttgaaaattc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44968129 82 + 71252344 tcattattggaatgctaagcatgtgggagttatttatatcctgctcctcaaggtcattgtcaaggtctgattgcaaaaattc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332699 82 - 1393929 tcattattggaatgctaagcatgtgcgagttatttatatcctgctgctcaaggtcattgtcaaggcctgattacaaaaattc i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1409108 82 - 15889662 tcattattggaatgctaagcatgtgggagttatttatatcctgctgctcaaggtcattgtcaaggtctgattgcaaaaattc i aotNan1.NW_018506370v1 C 0 I 304 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84821415 62 + 108143057 I e proCoq1.NW_012147189v1 584006 76 - 10520994 I e dasNov3.JH570378 1221966 0 - 11655695 C e mm10.chr13 76442252 186 + 120421639 I e otoGar3.GL873536 1292070 0 - 29863360 C a score=237343.000000 s hg38.chr5_GL383530v1_alt 23865 25 + 101241 aaaaaattgcagcctcaggca-aact s panTro5.chr5 20252669 25 + 181907262 aaaaaattgcagcctcaggca-aact i panTro5.chr5 C 0 C 0 s panPan2.chr5 20269967 25 + 183735486 aaaaaattgcagcctcaggca-aact i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755807 25 - 13748885 aaaaaattgcagcctcaggca-aact i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53790980 25 - 163208435 aaaaaattgcagcctcaggca-aact i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87818746 25 - 180051392 gaaaaattgcagcctcaggca-aact i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923158 25 - 181584905 gaaaaattgcagcctcaggca-aact i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146031 25 - 8785636 gaaaaattgcagcctcaggca-aact i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614267 25 + 27333823 gaaaaattgcagcctcaggca-aact i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884396 25 - 91010382 aaaaaattgcagcctcaggca-aact i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1995377 25 + 5179401 gaaaaattgcagcctcaggca-aact i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7701217 25 - 21726897 aaaacattgcagcctcaggca-aact i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522421 26 + 204313951 aaaaaattacagcctcaggcataaat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44968211 26 + 71252344 aaaaaattacagcctcaggcataaat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332781 26 - 1393929 aaaaaattacagcctcaggcataaat i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1409494 26 - 15889662 aaaaaattacagcctcaggcataaat i aotNan1.NW_018506370v1 I 304 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84821415 62 + 108143057 I e proCoq1.NW_012147189v1 584006 76 - 10520994 I e dasNov3.JH570378 1221966 0 - 11655695 C e mm10.chr13 76442252 186 + 120421639 I e otoGar3.GL873536 1292070 0 - 29863360 C a score=13600.000000 s hg38.chr5_GL383530v1_alt 23890 1 + 101241 g s panTro5.chr5 20252694 1 + 181907262 g i panTro5.chr5 C 0 C 0 s panPan2.chr5 20269992 1 + 183735486 g i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755832 1 - 13748885 g i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791005 1 - 163208435 g i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87818771 1 - 180051392 g i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923183 1 - 181584905 g i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146056 1 - 8785636 g i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614292 1 + 27333823 g i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884421 1 - 91010382 g i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1995402 1 + 5179401 g i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7701242 1 - 21726897 g i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522447 1 + 204313951 g i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44968237 1 + 71252344 g i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332807 1 - 1393929 g i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1409520 1 - 15889662 g i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1221966 1 - 11655695 G i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84821415 62 + 108143057 I e proCoq1.NW_012147189v1 584006 76 - 10520994 I e mm10.chr13 76442252 186 + 120421639 I e otoGar3.GL873536 1292070 0 - 29863360 C a score=577712.000000 s hg38.chr5_GL383530v1_alt 23891 56 + 101241 ggTTAAGAGTGAGATTTTGCTAGTCCTATGGCCAGGGAGCCTGAGAGTC-CCATATT s panTro5.chr5 20252695 56 + 181907262 ggTTAAGAGTGAGATTTTGCTAGTCCTATGGCCAGGGAGCCTGAGAGTC-CCATATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20269993 56 + 183735486 ggTTAAGAGTGAGATTTTGCTAGTCCTATGGCCAGGGAGCCTGAGAGTC-CCATATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755833 56 - 13748885 ggTTAAGAGTGAGATTTTGCTAGTCCTATGGCCAGGGAGCCTGAGAGTC-CCATATT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791006 56 - 163208435 ggTTAAGAGTGAGATTTTGCTAGTCCTATGGCCAGGGAGCCTGAGAGTC-CCATATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87818772 55 - 180051392 ggTTAAGAGTGAGATTTTGCTAGTCCTCTGGCCAGGGAGCCTA-AGGTC-CCATATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923184 55 - 181584905 ggTTAAGAGTGAGATTTTGCTAGTCCTCTGGCCAGGGAGCCTA-AGGTC-CCATATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146057 55 - 8785636 ggTTAAGAGTGAGATTTTGCTAGTCCTCTGGCCAGGGAGCCTA-AGGTC-CCATATT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614293 55 + 27333823 ggTTAAGAGTGAGATTTTGCTAGTCCTCTGGCCAGGGAGCCTG-AGGTC-CCATATT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884422 55 - 91010382 ggTT-AGAGTGAGATTTTGCTAGTCCTATGGCCAGGGAGCCTGAAAGTC-CCATATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1995403 55 + 5179401 ggTTAAGAGTGAGATTTTGCTAGTCCTCTGGCCAGGGAGCCTG-AGGTC-CCATATT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7701243 56 - 21726897 ggTTAAGAGTGAGACTTTGCTAGTCCTATGCCCAGGGAGCCTGAGGGTC-CCATATT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522448 57 + 204313951 ggTTAAGAGTAAGATTTTACTAGTCCTATGGCCAGGGAGACTCAGAGTCTCTATATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44968238 57 + 71252344 ggTTAAGAGTAAGATTTTGCTAGTCCTATGGCTGGGGAGCCTCAGAGTCTCCATATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332808 57 - 1393929 ggTTAAGAGTAAGATTTTGCTAGTCCTATGGCCAGGGAGCCTCAGAGTCTCCATATT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1409521 57 - 15889662 ggTTAAGAGTAAGATTTTGCTAGGCCTATGGCCAGGAAGCCTCAGAGTCTCCATATT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1292070 57 - 29863360 GGTTAGGAGTGAGATTTGGATGGTATTATGGCCAGGGAAACTGGGAGTCCCCATTTT i otoGar3.GL873536 C 0 C 0 s dasNov3.JH570378 1221967 50 - 11655695 GGATAA-------ACTCTGATAATATTAGAGCCAGGGAATCTAGGAATCCCCACATC i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84821415 62 + 108143057 I e proCoq1.NW_012147189v1 584006 76 - 10520994 I e mm10.chr13 76442252 186 + 120421639 I a score=275716.000000 s hg38.chr5_GL383530v1_alt 23947 32 + 101241 GTGTCCTTTCCATCTCCATTCCTTCCAACCCT s panTro5.chr5 20252751 32 + 181907262 GTGTCCTTTCCATCTTCATTCCTTCCAACCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270049 32 + 183735486 GTGTCCTTTCCATCTTCATTCCTTCCAACCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755889 32 - 13748885 GTGTCCTTTCCATCTCCATTCCTTCCAACCCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791062 32 - 163208435 GCGTCCTTTCCATCTCCATTCCTTCCAACCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87818827 31 - 180051392 GTGT-CTTTCCATCTCCATTCCTTCCAGCCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923239 31 - 181584905 GTGT-CTTTCCATCTCCATTCCTTCCAGCCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146112 31 - 8785636 GTGT-CTTTCCATCTCCATTCCTTCCAGCCCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614348 31 + 27333823 GTGT-CTTTCCATCTCCATTCCTTCCAGCCCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884477 31 - 91010382 GTGT-CTTTCCATCTCCATTCCTTCCAGCTCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1995458 31 + 5179401 GTGT-CTTTCCATCTCCATTCCTTCCACCCCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7701299 31 - 21726897 GTGT-CTTTCCATCTCCATTCCTTCCAGCTCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522505 32 + 204313951 GTGTCCTTTCCATCTATGTTCCTCCCAATCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44968295 32 + 71252344 GTGTCCTTTCCATCTGTGTTCCTCCCAGTCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332865 32 - 1393929 GTGTCCTTTCCATCTGTGTTCCTCCCAGTCCT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1409578 32 - 15889662 GTGTCCTTTCCATCTGTGCTCCTCCCAATCCT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1292127 20 - 29863360 GTGTCTTTTTAATCTCCCAC------------ i otoGar3.GL873536 C 0 I 1 s mm10.chr13 76442438 29 + 120421639 gtctcagctccttctccagc---accacacct i mm10.chr13 I 186 C 0 s dasNov3.JH570378 1222017 31 - 11655695 GTGTCCTTTCAAACTCTTCCCCATGCACCCA- i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84821415 62 + 108143057 I e proCoq1.NW_012147189v1 584006 76 - 10520994 I a score=45476.000000 s hg38.chr5_GL383530v1_alt 23979 4 + 101241 CCCA s panTro5.chr5 20252783 4 + 181907262 CCCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270081 4 + 183735486 CCCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755921 4 - 13748885 CCTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791094 4 - 163208435 CCCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87818858 4 - 180051392 CCCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923270 4 - 181584905 CCCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146143 4 - 8785636 CCCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614379 4 + 27333823 CCCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884508 4 - 91010382 CCCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1995489 4 + 5179401 CCCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7701330 4 - 21726897 CCCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522537 4 + 204313951 CTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44968327 4 + 71252344 CTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332897 4 - 1393929 CTCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1409610 4 - 15889662 CTCA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84821477 4 + 108143057 CCCA i micMur3.chr12 I 62 C 0 s otoGar3.GL873536 1292148 3 - 29863360 CCT- i otoGar3.GL873536 I 1 C 0 s mm10.chr13 76442467 4 + 120421639 gtca i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1222048 4 - 11655695 CCCA i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e proCoq1.NW_012147189v1 584006 76 - 10520994 I a score=2306849.000000 s hg38.chr5_GL383530v1_alt 23983 171 + 101241 CAGGGCTCACTA-GAAGTCATGTTTTAAGGACCAAAAGCAGAATGAGAATaaagatggagcacaaggcagtggttaaaagtgggaattctgggataggttgcctggtttcatatcagccccgaaacttacat--------accttacgcaagtcacttaactttgtattgccccagtttc s panTro5.chr5 20252787 171 + 181907262 CAGGGCTCACTA-GAAATCATGTTTTAAGGACCAAAAGCAGAATGAGAATaaagatggagcacaaggcagtggttaaaagtgggaattctgggataggttgcctggtttcatatcagccccgaaacttacat--------accttacgcaagtcacttaactttgtattgccccagtttc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270085 171 + 183735486 CAGGGCTCACTA-GAAGTCATGTTTTAAGGACCAAAAGCAGAATGAGAATaaagatggagcacaaggcagtggttaaaagtgggaattctgggataggttgcctggtttcatatcagccccgaaacttacat--------accttacgcaagtcacttaactttgtattgccccagtttc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4755925 171 - 13748885 CAGGGCTCACTA-GAAGTCACGTTTTAAGGACCAAAAGCAGAATGAGAATaaagatggagcacaaggcagtggttaaaagtgggaattctgggataggttgcctggtttcatatcagccctgaaacttacat--------accttacgcaagtcacttaactttgtattgccccagtttc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791098 171 - 163208435 CAGGGCTCACTA-GAAGTCATGTTTTAAGGACCAAAAGCAGAATGAGAATAAAgatgcagcacaaggcagtggttaaaagtgggaattctgggacaggttgcctggtttcatatcagccccgaaacctacat--------accttaggcaagtcacttaactttgtattgccccagtttc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87818862 171 - 180051392 CAGGGCTCACTA-GAAGTCATGTTTTAAGGACCAAAAGCAGAATGGGAATAAAGATGcagcacaaggcaatgtttaaaagtggggattctcggatagattgcctggtttcatctcagtcctgaaacctacat--------accttaggcaagtcacttaactttctattgccccagtttc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923274 171 - 181584905 CAGGGCTCACTA-GAAGTCATGTTTTAAGGACCAAAAGCAGAATGGGAATAAAGATGcagcacaaggcaatgtttaaaagtggggattctcggatagattgcctggtttcatctcagtcctgaaacctacat--------accttaggcaagtcacttaactttctattgccccagtttc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146147 171 - 8785636 CAGGGCTCACTA-GAAGTCATGTTTTAAGGACCAAAAGCAGAATGGGAATAAAGATGcagcacaaggcaatgtttaaaagtggggattctcggatagattgcctggtttcatctcagtcctgaaacctacat--------accttaggcaagtcacttaactttctattgccccagtttc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614383 171 + 27333823 CAGGGCTCACTA-GAAGTCATGTTTTAAGGACCAAAAGCAGAATGGGAATAAAGATGcagcacaaggcaatgtttaaaagtggggattctcggatagattgcctggtttcatctcagtcctgaaacctacat--------accttaggcaagtcacttaactttctattgccccagtttc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884512 171 - 91010382 CAGGGCTCACTA-GAAGTCATATTTTAAGGACCAAAAGCAGAATGGGAATAAAGATGcagcacaaggcagtgtttagaagtggggattctcagatagattgcctggtttcatctcagtcctgaaacctacat--------accttaggcaagtcacttaactttctattgccccagtttc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1995493 171 + 5179401 CAGGGCTCACTA-GAAGTCATGTTTTAAGGACCAAAAGCAGAATGGGAATAAAGATGcagcacaaggcaatgtttaaaaatggggattctcggatagattgcctggtttcatctcagtcctgaaacctacat--------accttaggcaagtcacttaactttctattgccccagtttc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7701334 171 - 21726897 CAGCGCTCACTA-GAAGTCATGTTTTAAGGACCAAAAGCAGAATGGGAATAAAGATGcagcacaaggcagtgtttaaaagtggggattctgggatagattgcctgctttcatctcagtcctgaaacctacat--------accttaggcaagtcacttaactttctattgccccagtttc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522541 169 + 204313951 AAGGGCTTACTA-GAAGTCATGTTTTAAGGACCAGAGGCAGAATGGGAATAAAGATGcagcac-aggcagtatttaaaagtgtggattctgggataggttgcctggttttgtctcagccct-aaacctacat--------acttcaggcaagtcacttaactctgtattgccccagtttc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44968331 167 + 71252344 AAGGGCTCACTA-GAAGCCATGTTTTAAGGACCAAAAGCAGAATGGGAGTAAAGATGCATCAC-AGGCagtatttaaaagtgtggattctgggatagggtgcctggttttgcctcagccct-aaacgtacat--------actttaagcaagtcacttaactc--tattgccccagtttc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 332901 168 - 1393929 AAGTGCTCACCA-GAAGTCATGTTTTAAGGACCAAAAgcagaatgagaataaagatgcagcac-aggcagtatttaaaagtttggattctgggatagggtgcctggttttacctcagccct-aaac-tacat--------acgttagacaagtcacttaactctgtattgcctccgtttc i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1409614 169 - 15889662 AAGGGCTCACTA-GAAGTCATGTTTTAAGGACCAAAAGCAGAATGGGAATAAAGATGcagcac-aggcagtatttaaaagtgtggattctgggatagggttcctggttttatctcagccct-aaacctacat--------actttaggcaagtcacttaactctgtattgccccagtttc i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84821481 170 + 108143057 CAGGGCTAACTG-AAAGTCATGTTTCAAGGAACAAAAGCAGTATGGGAATaaagatgcaacgcaaggcagtggttaaaagca-ggagtctaggataggatgcctggtttcactgcagccctgaaaattacaa--------actttgggcaagtcacttaaccttccattgccccagtttc i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 584082 170 - 10520994 CAGGGCTCACTG-AAAGTCATGTTTCGAGGAACAAAAGCAGGATGGGAATAAAGATGcagcacaaggcaatgattaaaagca-ggagtctaggataggatgtctgatttcacctcagccctgaaacttacaa--------actttgggcaagtcacttaaccttccattggcccagtttc i proCoq1.NW_012147189v1 I 76 T 1800 s otoGar3.GL873536 1292151 171 - 29863360 CAGGTTTCACCA-AAAGTCATGCTTCAAGGAACAAAAGCAGAGTGGGAATGAagatgcagcatagggcagtgattaaaagcagggactggagggtgggatgtctggtgccttctcagccctgaaacttccaa--------accttgggcaagtcacttaaccttccactgtctcagtttc i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76442471 139 + 120421639 ctgtgatgattacggagtaatcctttgaaactgtaagccagcccgcaatt--aggtgtAgc-------------taaaagcgtgggctctggagaaagatgcctggtttcttctcaaccctgaaacacacag--------gccttgggcaa------------------gatctagtttc i mm10.chr13 C 0 I 5 s dasNov3.JH570378 1222052 161 - 11655695 CAAAACTCACTA-GAAGCCATATTTCTGGGAA-AAAACCagagacagaataaagaagaggcagaag-----------------ggactctggatcagaaagcctgggtttatccccattctgcaacgtacaagctatgtggccctgggcaaatcagttaaccttttgttgtctcactttc i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I a score=542909.000000 s hg38.chr5_GL383530v1_alt 24154 37 + 101241 ctcatctgtaaaacggggttaatagtaagacctattt s panTro5.chr5 20252958 37 + 181907262 ctcatctgtagaacggggttaatagtaagacctattt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270256 37 + 183735486 ctcatctgtagaacggggttaatagtaagacctattt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756096 37 - 13748885 ctcatctgtaaaacggggttaatagtaagacctattg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791269 37 - 163208435 ctcatctgtaaaacagggttaatagtaagacatattt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819033 37 - 180051392 ctcatctgtaaaatggggttaatagtaagacctattt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923445 37 - 181584905 ctcatctgtaaaatggggttaatagtaagacctattt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146318 37 - 8785636 ctcatctgtaaaatggggttaatagtaagacctattt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614554 37 + 27333823 ctcatctgtaaaatggggttaatagtaagacctattt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884683 37 - 91010382 ctcatctgtaaaatggggttaatagtaagacctattt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1995664 37 + 5179401 ctcatctgtaaaatggggttaatagtaagacctattt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7701505 37 - 21726897 cttatctgtaaaatggggttaatagtaagacctattt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522710 37 + 204313951 ctcacctgtaaaatggggttaatagtaagacctattt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44968498 37 + 71252344 ctcacctgtaaaatggggttaatagtaagacctattt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 333069 37 - 1393929 ctcacctgtaaaatggggttaatagtaagacctattt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1409783 37 - 15889662 ctcacctgtaaaatggggttaatagtaagacctattt i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84821651 37 + 108143057 ctcatttgtgaaatggggttaatagtaagatctatct i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1292322 37 - 29863360 ctcatctgtgaagtggggctaatgagaagatgtattt i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76442615 37 + 120421639 tccaactgtgatatgggctccatagtaagacatattg i mm10.chr13 I 5 C 0 s dasNov3.JH570378 1222213 37 - 11655695 ttcatctgtaaaatgcaattaataatgaaacctatct i dasNov3.JH570378 C 0 I 432 e canFam3.chr3 14301556 4682 + 91889043 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T a score=376293.000000 s hg38.chr5_GL383530v1_alt 24191 33 + 101241 cattggattgttatgagggttaaattatataTA s panTro5.chr5 20252995 33 + 181907262 cattggattgttatgagggttaaattatatata i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270293 33 + 183735486 cattggattgttatgagggttaaattatatata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756133 33 - 13748885 cattggattgttatgagggttaaattatatata i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791306 33 - 163208435 cattgggttgttgtgagggttaaattatatata i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819070 33 - 180051392 cactgggttattatgagggttaaattatatata i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923482 33 - 181584905 cactgggttattatgagggttaaattatatata i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146355 33 - 8785636 cactgggttattatgagggttaaattatatata i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614591 33 + 27333823 cactgggttattatgagggttaaattatatata i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884720 33 - 91010382 cactgggttgttatgagggttaaattatatata i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1995701 33 + 5179401 cactgggttattatgagggttaaattatatata i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7701542 33 - 21726897 cactgggttgttatgagggttaaattatatata i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522747 33 + 204313951 cattgggttgttatgagggttaaaatttatata i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44968535 33 + 71252344 cattgggttgttatgagggttaaatTATATATA i saiBol1.JH378106 C 0 M 100 s cebCap1.NW_016107830v1 333106 21 - 1393929 cactgggttgttatga--tttaa---------- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1409820 33 - 15889662 cattgggttgttatgagggttaaattatatata i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84821688 32 + 108143057 ca-tgggtcatcataagggttaaattatatata i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1292359 33 - 29863360 cactgggtcattgtaagggttaaattttatata i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76442652 30 + 120421639 cactgcataatcaaaggagttagatgctat--- i mm10.chr13 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222250 432 - 11655695 I a score=8281.000000 s hg38.chr5_GL383530v1_alt 24224 1 + 101241 T s panTro5.chr5 20253028 1 + 181907262 t i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270326 1 + 183735486 t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756166 1 - 13748885 t i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791339 1 - 163208435 t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819103 1 - 180051392 t i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923515 1 - 181584905 t i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146388 1 - 8785636 t i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614624 1 + 27333823 t i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884753 1 - 91010382 t i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1995734 1 + 5179401 t i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7701575 1 - 21726897 t i colAng1.NW_012115488v1 C 0 I 153 s micMur3.chr12 84821720 1 + 108143057 t i micMur3.chr12 C 0 I 274 s otoGar3.GL873536 1292392 1 - 29863360 t i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222250 432 - 11655695 I e mm10.chr13 76442682 0 + 120421639 C e aotNan1.NW_018506370v1 1409853 0 - 15889662 C e cebCap1.NW_016107830v1 333127 0 - 1393929 C e saiBol1.JH378106 44968568 100 + 71252344 M e calJac3.chr2 112522780 0 + 204313951 C a score=5005.000000 s hg38.chr5_GL383530v1_alt 24225 1 + 101241 A s panTro5.chr5 20253029 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270327 1 + 183735486 a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756167 1 - 13748885 a i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791340 1 - 163208435 a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819104 1 - 180051392 a i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923516 1 - 181584905 a i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146389 1 - 8785636 a i macNem1.NW_012011400v1 C 0 I 174 s cerAty1.NW_012002401v1 1614625 1 + 27333823 a i cerAty1.NW_012002401v1 C 0 I 166 s chlSab2.chr4 1884754 1 - 91010382 a i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1995735 1 + 5179401 a i manLeu1.NW_012103732v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84821721 274 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222250 432 - 11655695 I e mm10.chr13 76442682 0 + 120421639 C e otoGar3.GL873536 1292393 0 - 29863360 C e aotNan1.NW_018506370v1 1409853 0 - 15889662 C e cebCap1.NW_016107830v1 333127 0 - 1393929 C e saiBol1.JH378106 44968568 100 + 71252344 M e calJac3.chr2 112522780 0 + 204313951 C e colAng1.NW_012115488v1 7701576 153 - 21726897 I a score=17785.000000 s hg38.chr5_GL383530v1_alt 24226 9 + 101241 TTTTGTGTG s panTro5.chr5 20253030 9 + 181907262 gtatgtGTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270328 9 + 183735486 gtatgtGTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756168 9 - 13748885 gtatgtGTG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791341 9 - 163208435 gtgtgtgTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819105 5 - 180051392 ----gtgtg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923517 5 - 181584905 ----gtgtg i macFas5.chr6 C 0 C 0 s chlSab2.chr4 1884755 9 - 91010382 ttgtgtgtg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1995736 9 + 5179401 gtgtgtgTG i manLeu1.NW_012103732v1 C 0 M 1066 s calJac3.chr2 112522780 6 + 204313951 ---tatata i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107830v1 333127 2 - 1393929 -------tg i cebCap1.NW_016107830v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84821721 274 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222250 432 - 11655695 I e mm10.chr13 76442682 0 + 120421639 C e otoGar3.GL873536 1292393 0 - 29863360 C e aotNan1.NW_018506370v1 1409853 0 - 15889662 C e saiBol1.JH378106 44968568 100 + 71252344 M e colAng1.NW_012115488v1 7701576 153 - 21726897 I e cerAty1.NW_012002401v1 1614626 166 + 27333823 I e macNem1.NW_012011400v1 1146390 174 - 8785636 I a score=6886.000000 s hg38.chr5_GL383530v1_alt 24235 50 + 101241 CGTGTGTGtatata----------------------------tatacacacacac--atata----------tgtatgtgtatat-gtgtg s panTro5.chr5 20253039 50 + 181907262 CGTGTGTGtatata----------------------------tatacacacacac--atata----------tgtatgtgtatat-gtgtg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270337 36 + 183735486 CGTGTGTGtatata----------------------------tatacacacacac--atata-------------------------tgta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756177 50 - 13748885 CGTGTGTGTATATA----------------------------TATACACACACAC--Atata----------tgtatgtgtatgt-gggtg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791350 38 - 163208435 CATGTGTGTGtata----------------------------t--------------atata----------tacacacacacac-atata i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819110 89 - 180051392 tgTGtataaatatagatttatactgtatatatagatttatactatatatacacac--atatagtatatatagtataaatatatatagtgta i rheMac8.chr6 C 0 I 31 s macFas5.chr6 87923522 89 - 181584905 tgTGtataaatatagatttatactgtatatatagatttatactatatatacacac--atatagtatatatagtataaatatatatagtgta i macFas5.chr6 C 0 I 31 s chlSab2.chr4 1884764 89 - 91010382 --tgtatatatatagatttatattatatatatagatttatactatatatacacacatatatagtatatatagtataaatatatatagtgta i chlSab2.chr4 C 0 I 46 s calJac3.chr2 112522786 50 + 204313951 --tatatatatata----------------------------tatatatatatat--acata-catacaca-cacacacacaca------- i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107830v1 333129 25 - 1393929 --tgtgtatatata----------------------------tatatatatatat------------------------------------ i cebCap1.NW_016107830v1 C 0 C 0 s otoGar3.GL873536 1292393 25 - 29863360 -------aaataaa----------------------------tatatatgtatat--gtgta----------------------------- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76442682 32 + 120421639 ------catacaca----------------------------ttcttaaacacgc-----------------tgaacagggat-------- i mm10.chr13 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84821721 274 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222250 432 - 11655695 I e aotNan1.NW_018506370v1 1409853 0 - 15889662 C e saiBol1.JH378106 44968568 100 + 71252344 M e colAng1.NW_012115488v1 7701576 153 - 21726897 I e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M e cerAty1.NW_012002401v1 1614626 166 + 27333823 I e macNem1.NW_012011400v1 1146390 174 - 8785636 I a score=15939.000000 s hg38.chr5_GL383530v1_alt 24285 4 + 101241 tgta s panTro5.chr5 20253089 4 + 181907262 tgta i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270373 4 + 183735486 tgtg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756227 4 - 13748885 tgta i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791388 4 - 163208435 tgtg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819230 4 - 180051392 tata i rheMac8.chr6 I 31 I 15 s macFas5.chr6 87923642 4 - 181584905 tata i macFas5.chr6 I 31 I 15 s cerAty1.NW_012002401v1 1614792 4 + 27333823 tgta i cerAty1.NW_012002401v1 I 166 C 0 s chlSab2.chr4 1884899 4 - 91010382 tgta i chlSab2.chr4 I 46 C 0 s colAng1.NW_012115488v1 7701729 4 - 21726897 tgta i colAng1.NW_012115488v1 I 153 C 0 s calJac3.chr2 112522836 4 + 204313951 caca i calJac3.chr2 C 0 C 0 s otoGar3.GL873536 1292418 4 - 29863360 tgta i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84821721 274 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222250 432 - 11655695 I e mm10.chr13 76442714 0 + 120421639 C e aotNan1.NW_018506370v1 1409853 0 - 15889662 C e cebCap1.NW_016107830v1 333154 0 - 1393929 C e saiBol1.JH378106 44968568 100 + 71252344 M e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M e macNem1.NW_012011400v1 1146390 174 - 8785636 I a score=16425.000000 s hg38.chr5_GL383530v1_alt 24289 38 + 101241 tatatatacaca--cacacatatatgtatgt-gtatatgtg s panTro5.chr5 20253093 1 + 181907262 t---------------------------------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270377 8 + 183735486 t---------------------------------atatgtg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756231 1 - 13748885 t---------------------------------------- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791392 8 - 163208435 t---------------------------------atatatg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819249 38 - 180051392 --tatatacacacacacacatacatgtatgt-gtatatgtg i rheMac8.chr6 I 15 C 0 s macFas5.chr6 87923661 38 - 181584905 --tatatacacacacacacatacatgtatgt-gtatatgtg i macFas5.chr6 I 15 C 0 s macNem1.NW_012011400v1 1146564 38 - 8785636 --tatatacacacacacacatacatgtatgt-gtatatgtg i macNem1.NW_012011400v1 I 174 C 0 s cerAty1.NW_012002401v1 1614796 38 + 27333823 --tatacacacatgcacacatacatgtatgt-gtatatgtg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884903 38 - 91010382 --tatacacacacgcacacatacatgtatgt-gtatatgtg i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7701733 38 - 21726897 --tatacacacacacacacatacgtgtatgt-gtatatgcg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522840 33 + 204313951 --------cacacacacacacacaTATATATAGTATGTGTA i calJac3.chr2 C 0 I 6 s cebCap1.NW_016107830v1 333154 22 - 1393929 -------------------acacacatatatagtatGTGTG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1409853 15 - 15889662 --------------------------tatgtagtatgtgtg i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84821721 274 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222250 432 - 11655695 I e mm10.chr13 76442714 0 + 120421639 C e otoGar3.GL873536 1292422 0 - 29863360 C e saiBol1.JH378106 44968568 100 + 71252344 M e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M a score=95614.000000 s hg38.chr5_GL383530v1_alt 24327 23 + 101241 tgtgtatttg--tgagtgtatGTTT s panTro5.chr5 20253094 16 + 181907262 -------ttg--tgagtgtatgtTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270385 23 + 183735486 tgtgtatttg--tgagtgtatgtTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756232 16 - 13748885 -------ttg--tgagtgtatgtTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791400 23 - 163208435 tgtgtatTTG--TGAGTGTATGTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819287 23 - 180051392 tgtgtatttg--tgtgtgtgtgtTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923699 23 - 181584905 tgtgtatttg--tgtgtgtgtgtTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146602 23 - 8785636 tgtgtatttg--tgtgtgtgtgtTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614834 21 + 27333823 tgtgtatt----tgtgtgtgtgtTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884941 23 - 91010382 tgtgtatttg--tgtgtgtgtgtTT i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7701771 21 - 21726897 tgtgtatt----tgtgtgtgtgtTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522879 13 + 204313951 ------------TATTTGTGCATTT i calJac3.chr2 I 6 C 0 s saiBol1.JH378106 44968668 17 + 71252344 --------TGTGTGTCTGTGAGTTT i saiBol1.JH378106 M 100 C 0 s cebCap1.NW_016107830v1 333176 25 - 1393929 TGTGTATTTACGTGTCTGTGCGTTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1409868 25 - 15889662 tgtgcatttgtgtgtctgtgcgtTT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1292422 3 - 29863360 ----------------------tct i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84821721 274 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222250 432 - 11655695 I e mm10.chr13 76442714 0 + 120421639 C e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M a score=1007999.000000 s hg38.chr5_GL383530v1_alt 24350 109 + 101241 CATTACCTGTCACATGGAAAATGGTTTA--TAAGAGT-TTGTTAACTAAAG--AAAGGTACCTTCCTCTTTATTA--TATTCTGCAAGCCTCCAAGATCTTCTCTGTTAAGAGGAG s panTro5.chr5 20253110 109 + 181907262 CATTACCTGTCACGTGGAAAATTGTTTA--TAAGAGT-TTGTTAACTAAAG--AAAGGTACCTTCCTCTTTATTA--TATTCTGCAAGCCTACGAGATCTTCTCTGTTAAGAGGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270408 109 + 183735486 CATTACCTGTCACGTGGAAAATTGCTTA--TAAGAGT-TTGTTAACTAAAG--AAAGGTACCTTCCTCTTTATTA--TATTCTGCAAGCCTACGAGATCTTCTCTGTTAAGAGGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756248 109 - 13748885 CATTACCTGTCACATAGAAAATGGTTTA--TAAGAGT-TTGTTAACTAAAG--AAAGGTACCTTCCTCTTTATTA--TATTCTGCAAGCCTACGAGATCTTCTCTGTTAAGAGGAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791423 104 - 163208435 CATTACCTGTCACATAGAAAATGGTTTG--TAAGAGT-TTGTTAACTAAAG--AAAGGTACTTTTCTCTTTATTA--TATTATGCAAACCTACGAGTTCTTCTCTGTT-----GAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819310 109 - 180051392 CATTGCCTGTCACATAGAGAATGGTTTA--TAAGAGT-TTGTTAACTAAAG--AAAGGTACCTTCCTCTTTATTA--TATTCTGCAAGCCTATGAGAGCTTCTCTGTTAAGAGGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923722 109 - 181584905 CATTGCCTGTCACATAGAGAATGGTTTA--TAAGAGT-TTGTTAACTAAAG--AAAGGTACCTTCCTCTTTATTA--TATTCTGCAAGCCTATGAGAGCTTCTCTGTTAAGAGGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146625 109 - 8785636 CATTGCCTGTCACATAGAGAATGGTTTA--TAAGAGT-TTGTTAACTAAAG--AAAGGTACCTTCCTCTTTATTA--TATTCTGCAAGCCTATGAGAGCTTCTCTGTTAAGAGGAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614855 109 + 27333823 CATTGCCTGTCACATAGAGAATGGTTTA--TAAGAGT-TTGTAAACTAAAG--AAAGGTACCTTCCTCTTTATTA--TATTCTGCAAGCCTATGAGAGCTTCTCTGTTAAGAGGAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1884964 109 - 91010382 CATTGCCTGTCACATAGAGAATGGTTTA--TAAGAGT-TTGTTAACTAAAG--AAAGGTACCTTCCTCTTTATTA--TATTCTGCAAGCCTATGAGAGCTTCTCTGTTAAGAGGAG i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7701792 109 - 21726897 CATTACCTGTCACATAGAGAATGGTTTA--TAAGGGT-TTGTTAACTAAAG--AAAGCTACCTTCCTCTTTATTA--TATTCTGCAAGCCTACGAGAGCTTCTCTGTTAAGAGGAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112522892 109 + 204313951 CATTACCCGTCACATAGAAAATGGTCTA--TAAGAGT-TTGTTAACTAAAG--AAAGGTAACTTCCTCTTTATTA--TATTCTGCAAGCCTTCGAGATCGTTTCTGTTAAGAAGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44968685 106 + 71252344 CATTACCAATCACATAAAAAATGGTCTG--TAAGAGT-TTGTTAACTAAAG--AAAGGTACCTTCCTCTTTATTA--TATTCTGCAAGCCTAGGAGATCTTTTCTGTT---AAGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 333201 111 - 1393929 CATTACCCATCACATAGAAAATGGTCTATTTAAGAGT-TTGTTAGCTAAAG--AAAGATACCTTCCTCTTTATGA--TGTTCTGCAAGCCTACAAGATCTTTTCTGTTAAGAAGAG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1409893 109 - 15889662 CATTACCCATCACATAGAAAATGGTCTA--TAAGAGT-TTGTTAACTAAAG--AAAGGTACCTTCCTCTTTATTA--TATTCTGCAAGCCTACGAGATCTTTTCTGTTAAGAAGAG i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1292425 91 - 29863360 cagtacctgtcacattgaaa--ggctga--gtagaGC-TTTTTA--------------------CTTCATTATTAATTGTCGTGCGAGCATAGGTGATATTCCCTGGTAGAAGAGG i otoGar3.GL873536 C 0 I 8 s mm10.chr13 76442714 104 + 120421639 -------tgtcatgtggaaagttctaga--taagtgtatggtAAATTTTAA--AAGGGCCTCTGCCTGTCTATGAGCTGTTGCATAAGCC-ATGTGATTGTGTCTGCTATCAGCAG i mm10.chr13 C 0 I 8 s dasNov3.JH570378 1222682 112 - 11655695 cagtccctgcaacataggaaatgctctc--taagaat-ttgttgaataaaAATAAACATGCCTGATTTTTTATTAATTGTTGTATAAGCCCA-GGGAGCCACTCTGATAGAAGATG i dasNov3.JH570378 I 432 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84821721 274 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M a score=661141.000000 s hg38.chr5_GL383530v1_alt 24459 64 + 101241 -CATGTGCCTTAGTTCTGGAGGCCTCCTTTTCTTCTCCATT-ATGCTGGGGGCATGGTGACTAGTA s panTro5.chr5 20253219 64 + 181907262 -CATGTGCCTTAGTTCTGGAGGCCTCCTTTTCTTCTCCGTT-ATGCTGGGGGCATGGTGACTAGTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270517 64 + 183735486 -CATGTGCCTTAGTTCTGGAGGCCTCCTTTTCTTCTCCGTT-ATGCTGGGGGCATGGTGACTAGTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756357 64 - 13748885 -CATGTGCCTTAGTTCTGGAGGCCTCCTTTTCTTCTCCATT-ATACTGGGGGCATGGTGACAAGTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791527 64 - 163208435 -CATGTGCCTTAGTTCTGGAGGCCTCCCTTTCTTCTCCATT-ATACTGGGGGCATGGTGACTAGTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819419 64 - 180051392 -CATGTGCTGTAGTTCTGGAGGCCTCCTTTTCTTCACCATT-ATACTAGGGGTACGGTGACTATTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923831 64 - 181584905 -CATGTGCTGTAGTTCTGGAGGCCTCCTTTTCTTCACCATT-ATACTAGGAGTACGGTGACTATTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146734 64 - 8785636 -CATGTGCTGTAATTCTGGAGGCCTCCTTTTCTTCACCATT-ATACTAGGGGTACGGTGACTATTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1614964 64 + 27333823 -CATGTGCCGTAGTTCTGGAGGCCTCCTTTTCTTCACCGTT-ATACTAGGGGTACGGTGACTATTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1885073 64 - 91010382 -CATGTGCCGTAGTTCTGGAGGCCTCCTTTTCTTCACCATT-ATACTAGGGGTATGGTGACTATTA i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7701901 64 - 21726897 -CATGTGCCGTAGTTCTGGAGGCCTTCTTTTCTTCACTATT-ATACTAGGGGTACGGTGACTATTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112523001 64 + 204313951 -TATGGGCTTTAGTTCTGGAAACCTCCTTTTCTTCTCCATT-ATACTGCAGGCATGGTGACTAGTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44968791 64 + 71252344 -TATGGGCTTTAGTTCTGGAAACCCCCTTTTCTTCTCCATT-AGACTGCAGGCATGGTGACTAGTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 333312 64 - 1393929 -TATGGGCTTTAGTTCTGGAAACCTCCTTTTTTTCTCCATT-ATACTGCAGGCATGGTGACTAGTA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1410002 64 - 15889662 -TATGGGCTTTAGTTCTGGAAACCTCCTTTTCTTCTCCATT-ATGCTGCAGGCATGGTGACTAGTA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84821995 64 + 108143057 -CATGTGGCTTAGCTCTGGAGGCCTCCTTCTCTTCACCCTT-ACACTGGGGGCAGAGTGACTAGCA i micMur3.chr12 I 274 C 0 s otoGar3.GL873536 1292524 61 - 29863360 -TGTGTGGCTTAGCTT--GTAACCTTTTTTCCTTCTCCCTT-ACA-TGGGGCCAGAGTGACTAGCA i otoGar3.GL873536 I 8 C 0 s mm10.chr13 76442826 65 + 120421639 -CATGTGGCTCAGATGTGCAGATCCTGTTGCTTTCCCTTTTAATGGCAGGGGGAAAGTGACTAGTG i mm10.chr13 I 8 C 0 s dasNov3.JH570378 1222794 64 - 11655695 GGTTGAAGCTTAACTCTGGAG-TCTCCTTTCTTTTCCCCTT-ACATTGAGGGCACAGTGACTAGTA i dasNov3.JH570378 C 0 I 4 e canFam3.chr3 14301556 4682 + 91889043 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M a score=1739422.000000 s hg38.chr5_GL383530v1_alt 24523 169 + 101241 AAGGGGTAGACAGAAATGAATAAAGGTGTGGGAAGAGAGCAGGAAGA-----AGATATGTGGGAGATCACTTTTCCAGTCC---CCTCTTGAGAAAGAAAATCTTTTCCCAGGGACTTTTCCCACTAAGCTAAGAAGTATGTAGACACAGGCTCTCAAACA--CTCTGACACATAATCT s panTro5.chr5 20253283 169 + 181907262 AAGGGGTAGACAGAAATGAATAAAGGTGTGGGAAGAGAGCAGGAAGA-----AGATATGTGGGAGATCACTTTTCCAGTCC---CCTCTTGAGTAAGAAAATCTTTTCCCAGGGACTTTTCCCACTAAGCTAAGAAGTATGTAGACACAGGCTCTCAAACA--CTCTGACACATAATCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270581 169 + 183735486 AAGGGGTAGACAGAAATGAATAAAGGTGTGGGAAGAGAGCAGGAAGA-----AGATATGTGGGAGATCACTTTTCCAGTCC---CCTCTTGAGAAAGAAAATCTTTTCCCAGGGACTTTTCCCACTAAGCTAAGAAGTATGTAGACACAGGCTCTCAAACA--CTCTGACACATAATCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756421 169 - 13748885 AAGGGGTAGACAGAAATGAATAAAGGTGTGGGAAGAGAGCAGGAAGA-----AGATATGTGGGAGATCACTTTTCCAGTCC---CCTCTTGAGAAAGAAAATCTTTTCCCAGGGACTTTTCCCACTAAGCTAAGAAGTATGTAGACACAGGCTCTCAAACA--CTCTGACACATAATCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791591 169 - 163208435 AAGGGGTAGACAGAAATGAATAAAGGTGTGGAAAGAGAGCAGGAAGA-----AAATATGTGGGAGATCACTTTTCCAGTCC---CCACTTGAGAAAGAAAATCTTTTCCCAGGGGCTTTTCCCACTAAGCTACTAAGTATGCAGACACAGGCTCTCAAACA--CTCTGACATATAATCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819483 169 - 180051392 AAGGGCTAGACAGAAATGAATAAAGGTGTGGGAAGAGAGCAGGAAGA-----AGATATGTGGGAGATCACTTTTCCAGTCC---CCTCTTAAGAAAGGAAATCTTTTCCCAGGGACTTTTCCCACGAAGCTACTAAGTATGCAGACACAGGCTCTCAAACA--CTCTGACACGTAATGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87923895 169 - 181584905 AAGGGCTAGACAGAAATGAATAAAGGTGTGGGAAGAGAGCAGGAAGA-----AGATATGTGGGAGATCACTTTTCCAGTCC---CCTCTTAAGAAAGGAAATCTTTTCCCAGGGACTTTTCCCACGAAGCTACTAAGTATGCAGACACAGGCTCTCAAACA--CTCTGACACGTAATGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146798 169 - 8785636 AAGGGCTAGACAGAAATGAATAAAGGTGTGGGAAGAGAGCAGGAAGA-----AGATATGTGGGAGATCACTTTTCCAGTCC---CCTCTTAAGAAAGGAAATCTTTTCCCAGGGACTTTTCCCACGAAGCTACTAAGTATGCAGACACAGGCTCTCAAACA--CTCTGACACGTAATGT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1615028 169 + 27333823 AAGGGCTAGACAGAAATGAATAAAGGTGTGGGAAGAGAGCAGGAAGA-----AGATATGTGGGAGATCACTTTTCCAGTCC---CCTCTTAAGAAAGGAAATCTTTTCCCAGGGACTTTTCCCACGAAGCTACTAAGTATGCAGACACAGGCTCTCAAACA--CTCTGACACATAATGT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1885137 169 - 91010382 AAGGGCTAGACAGAAATGAATAAAGGTGTGGGAAGAGAGCAGGAAGA-----AGATATGTGGGAGATCACTTTTCCAGTCC---CCTCTTAAGAAAGGAAATCTTTTCCCAGGGACTTTTCCCACGAAGCTACTAAGTATGCAGACACAGGCTCTCAAACA--CTCTGACACATAGTGT i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7701965 169 - 21726897 AAGGGCTAGACAGAAATGAATAAAGGTGTGGGAAGAGAGCAGGAAGA-----AGATATGTGGGAGATCACTTTTCCAGTCC---CCTCTTAAGAAAGGAAATCTTTTCCCAGGGACTTTTCTCATGAAGCTACTAAGTATGCAGACACAGGCTCTCAAACA--CTCTGACACATAGTGT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112523065 169 + 204313951 AAGGGGTAGACAGAAATGAATAAAGGTGTGGGAAGAGAGCAGGAAGA-----AGATATGTGGGAGATCACTTTTCCAGTCT---CTTCTTGAGAAAGGAAATCTTTTCCCAGGGATTTTTCCCATTAAGCTACTAAGTATGCAGACACAGGCTCTCAAATG--CTGTGGCACATAATCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44968855 169 + 71252344 ATGGGGTAGACAGAAACAAATAAAGGTGTGGGAAGAGAGCAGGAAGA-----AGCTATGTGGGAGATCACTTTTCCAGTCT---CTTCTTGAGAAAGGAAATCTTTTCCCAGGGACTTTTCCCACTGAGCTACTAAGTATGCAGACACAGGCTCTCAAACA--CTCTGGCACATAATCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 333376 169 - 1393929 ATGGGGTAGACAGAAATGAATAAAGGTGTGGGAAGAGAGCAGGAAGA-----AGGTATGTGGGAGATCACTTTTCCAGTCT---CTTCTTGAGAAAGGAAATCTTTTCCCAGGGACTTTTCCCACTAAGCTACTAAGTATGCAGACACAGGCTCTCAAACA--CGCTGGCACATAATCT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1410066 169 - 15889662 AGGGGGTAGATAGAAATGAATAAAGGTGTGGGAAGAGAGCGGGAAGA-----AGATATGTGGGAGATCACTTTTCCAGTCT---CTTCTTGAGAAAGGAAATCTTTTCCCAGGGACTTTTCCCACTAAGCTACTAAGTATGCAGACGCAGGCTCTCAAACA--CTTTGGCACATAATCT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84822059 179 + 108143057 AGGGGGTGGACAGAAATGggtaaaggtatgagaaaagaaaaggaaaaggaaaaggTATCTGGGAGATCACTTCTCCAGTCCTTCCTTCTTGAGAAAGGAAGTCTGTTCCCAGGCACTGTTCCCACTTAGCTGCTGAGTATGCAGACACAGGCTCTCAAGAACCCTTTGACACATAATCT i micMur3.chr12 C 0 I 44 s otoGar3.GL873536 1292585 129 - 29863360 AGGGAATGGACAGAAATGGGTAAA-GTATAAGAAAAGGAAGG----------AGATATGGGGGAGATCACTTCTTTAGTAC---------------------CTGATCCCG--------TTCCAATCAGCTGCTGCATATG------CAGGCTCTCAGACACCCTTTGACACATC---- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76442891 114 + 120421639 TGATGGTGAACACAGCTGGGTGAATGTATTAGGAGAGAGAGGGAGAA-----GGACATGTAGGAG-CCACTTCTCTAGGCTTTTCCTCCTGGGGAAGCAAGCCT--TCCCAAGTGCTGTCCC--------------------------------------------------------- i mm10.chr13 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M a score=171327.000000 s hg38.chr5_GL383530v1_alt 24692 15 + 101241 CTCTTAAGCATCAGT s panTro5.chr5 20253452 15 + 181907262 CTCTTAAGCATCAGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270750 15 + 183735486 CTCTTAAGCATCAGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756590 15 - 13748885 CTCTTAAGCATCAGT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791760 15 - 163208435 CTCTTAAGCATCAGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819652 15 - 180051392 CTCTTAAGCATCAGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87924064 15 - 181584905 CTCTTAAGCATCAGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146967 15 - 8785636 CTCTTAAGCATCAGT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1615197 15 + 27333823 CTCTTAAGCATCAGT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1885306 15 - 91010382 CTCTTAAGCATCAGT i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7702134 15 - 21726897 CTCTTAAGCATCAGT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112523234 15 + 204313951 CTCTTAAGCATCAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44969024 15 + 71252344 CTCTTAAGCATCAGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 333545 15 - 1393929 CTCTTAAGCATCAGT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1410235 15 - 15889662 CTCTTAAGCATCAGT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1292714 15 - 29863360 CTTTAAAGCATCACC i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76443005 13 + 120421639 --CTTAAGCTTCAGC i mm10.chr13 C 0 I 49 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822238 44 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M a score=248909.000000 s hg38.chr5_GL383530v1_alt 24707 26 + 101241 GGTCATCTCCCTCTTACTGTGTAACC s panTro5.chr5 20253467 26 + 181907262 GGTCATCTCCCTTTTACTGTGTAACC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270765 26 + 183735486 GGTCATCTCCCTTTTACTGTGTAACC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756605 26 - 13748885 GGTCATCTCCCTCTTACTGTGTAACC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791775 26 - 163208435 GGTCATCTCCCTCTTACTGTGTAACC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819667 26 - 180051392 GGTCATCTCCCTCTTACTGTGTAACC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87924079 26 - 181584905 GGTCATCTCCCTCTTACTGTGTAACC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1146982 26 - 8785636 GGTCATCTCCCTCTTACTGTGTAAAC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1615212 26 + 27333823 GGTCATCTCCCTCTTACTGTGTAACC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1885321 26 - 91010382 GGTCATCTCCCTCTTACTGTGTAACC i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7702149 26 - 21726897 GGTCATCTCCCTCTTACTATGTAACC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112523249 26 + 204313951 GGTCAGCTCTCTCCTACTGTGTAACC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44969039 26 + 71252344 GGTCAACTCTCTCCTACTGTGTAACC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 333560 26 - 1393929 GGTCAGCTCTCTCCTGCTGTGTAACC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1410250 26 - 15889662 GGTCAGCTCTCTCCTACTGTGTAACC i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1292729 26 - 29863360 AGTCAGCTCTTTGCCACTGCATAACC i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822238 44 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443018 49 + 120421639 I e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M a score=-9157.000000 s hg38.chr5_GL383530v1_alt 24733 9 + 101241 AAT---------------C---ttttt s panTro5.chr5 20253493 9 + 181907262 AAT---------------C---ttttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270791 7 + 183735486 AAT---------------C-----ttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756631 12 - 13748885 AAT---------------Ctttttttt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791801 6 - 163208435 AAT---------------C------tt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819693 13 - 180051392 AAA-----------AAttt---ttttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87924105 12 - 181584905 AAA------------Attt---ttttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1147008 19 - 8785636 AAA-----ttttttttttt---ttttt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1615238 11 + 27333823 AAA-------------Att---ttttt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1885347 14 - 91010382 AAT----------ATATAT---ATATA i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7702175 24 - 21726897 tatatatatatatatatat---atttt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112523275 9 + 204313951 AAT---------------C---TTTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44969065 9 + 71252344 AAT---------------C---TTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 333586 9 - 1393929 AAT---------------C---TTTTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1410276 9 - 15889662 AAT---------------C---TTTTT i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822238 44 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443018 49 + 120421639 I e otoGar3.GL873536 1292755 0 - 29863360 C e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M a score=444585.000000 s hg38.chr5_GL383530v1_alt 24742 96 + 101241 tttttttttgagatggagtctcattctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctccgcctcccaggttgaagcga s panTro5.chr5 20253502 96 + 181907262 tttttttttgagatggagtctcattctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctccgcctcccaggttgaagcga i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270798 96 + 183735486 tttttttttgagatggagtctcattctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctccgcctcccaggttgaagcga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756643 96 - 13748885 tttttttttgagatggagtctcattctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctccgcctcccaggttgaagcga i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791807 96 - 163208435 cttttttttgagacagagtcccactctgttgcccaggctagagtgcagtggtgcaatctcagctcactgcaacctccgcctcccaggttgaagcta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819706 96 - 180051392 tttttttttgagatggagtctcgctctgttgtctgggctggagtgcagtggcgcaatctcagctcgctgcaacctccgcctcccgggttcaagcga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87924117 96 - 181584905 tttttttttgagatggagtctcgctctgttgtctgggctggagtgcagtggcgcaatctcagctcgctgcaacctccgcctcccgggttcaagcga i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1147027 96 - 8785636 tttttttttgagatggagtctcgctctgttgtctgggctggagtgcagtggcgcaatctcagctcgctgcaacctccgcctcccgggttcaagcga i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1615249 96 + 27333823 tttttttttgagatggagtctcgctctgttgtctgggctggagtgcagtggcgcaatctcagctcgctgcaacctccacctcccgggttcaagcga i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1885361 96 - 91010382 Gtttttttttagatggagtctcgctctgttgtctgggctggagtgcagtggcgcaatctcagctcgctgcaacctccgcctcccgggttcaagcga i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7702199 96 - 21726897 tttttttttgagatggaatctcgctctgttgtctgggctggagtgcaatggcgcaatctcagctcactgcaacctctgcctcccaggttcaagcga i colAng1.NW_012115488v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822238 44 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443018 49 + 120421639 I e otoGar3.GL873536 1292755 0 - 29863360 C e aotNan1.NW_018506370v1 1410285 0 - 15889662 C e cebCap1.NW_016107830v1 333595 0 - 1393929 C e saiBol1.JH378106 44969074 0 + 71252344 C e calJac3.chr2 112523284 0 + 204313951 C e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M a score=35343.000000 s hg38.chr5_GL383530v1_alt 24838 6 + 101241 ttctcc s panTro5.chr5 20253598 6 + 181907262 ttctcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270894 6 + 183735486 ttctcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756739 6 - 13748885 ttctcc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791903 6 - 163208435 ttgtcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819802 6 - 180051392 ttctcc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87924213 6 - 181584905 ttctcc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1147123 6 - 8785636 ttctcc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1615345 6 + 27333823 ttctcc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1885457 6 - 91010382 ttctcc i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7702295 6 - 21726897 ttctcc i colAng1.NW_012115488v1 C 0 C 0 s otoGar3.GL873536 1292755 6 - 29863360 TTCTCC i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822238 44 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443018 49 + 120421639 I e aotNan1.NW_018506370v1 1410285 0 - 15889662 C e cebCap1.NW_016107830v1 333595 0 - 1393929 C e saiBol1.JH378106 44969074 0 + 71252344 C e calJac3.chr2 112523284 0 + 204313951 C e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M a score=750480.000000 s hg38.chr5_GL383530v1_alt 24844 163 + 101241 tgcctcagcctcttgagtagctgagattacaggcgcccgccaccacacctg------tggtgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatctgc------cggcctcccaaagtgctgggattacaggcgtgagtaa s panTro5.chr5 20253604 163 + 181907262 tgcctcagcctcttgagtagctgggattacaggcgcccgccaccacacctg------tggtgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatctgc------cggcctcccaaagtgctgggattacaggcgtgagtaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20270900 163 + 183735486 tgcctcagcctcttgagtagctgggattacaggcgcccgccaccacacctg------tggtgtatttttagtagagatggggtttcaccatgttagccaggctggtctcaaactcctgaccttgtgatctgc------cggcctcccaaagtgctgggattacaggcgtgagTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756745 163 - 13748885 tgcctcagcctcttgagtagctgggattacaggtgcccgccaccacacctg------tggtgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatctgc------cggcctcccaaggtgctgggattacaggcatgagtaa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53791909 169 - 163208435 tgcctcagcgtcttgagtagctgggattacaggcgtccgccaccacacctg------tggtgtatttttagtagagatggggtttcaccgtgttggccaggctggtctcaaactcctgaccttgtgatccacctgcctcggcctcccaaaatgctgggattacaggtgtaggtaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819808 174 - 180051392 tgcctcagtctcccaagtagctgggattacaggtgcccgccaccatgcctggctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccacccgcctcagcctcccaaagtgctgggattacaggcat-AGTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87924219 174 - 181584905 tgcctcagtctcccaagtagctgggattacaggtgcccgccaccatgcctggctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccacccgcctcagcctcccaaagtgctgggattacaggcgt-AGTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1147129 174 - 8785636 tgcctcagtctcccaagtagctgggattacaggtgcccgccaccatgcctggctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccacccgcctcagcctcccaaagtgctgggattacaggcgt-AGTAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1615351 174 + 27333823 tgcctcaatctcccaagtagctgggattacaggcgcccgccaccatgcctggctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccacccgcctcagcctcccaaagtgctgggattacaggcgt-AGTAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1885463 174 - 91010382 tgcctcagtctcccaactagcttggattacaggcgcccgccaccatgcctggctaatttttgtatttttagtagagacggagtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccacccgcctcagcctcccaaagtgctgggattacaggcgt-AGTAA i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7702301 174 - 21726897 tgcctcagcctcccaagtagctgggattacaggcgcctgccaccacgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccacctgcctcagcctcccaaagtgctgggattacaggcgt-AGTAA i colAng1.NW_012115488v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822238 44 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443018 49 + 120421639 I e otoGar3.GL873536 1292761 0 - 29863360 C e aotNan1.NW_018506370v1 1410285 0 - 15889662 C e cebCap1.NW_016107830v1 333595 0 - 1393929 C e saiBol1.JH378106 44969074 0 + 71252344 C e calJac3.chr2 112523284 0 + 204313951 C e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M a score=17765.000000 s hg38.chr5_GL383530v1_alt 25007 3 + 101241 ccA s panTro5.chr5 20253767 3 + 181907262 ccA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20271063 3 + 183735486 TCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756908 3 - 13748885 ccA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53792078 3 - 163208435 ccA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819982 3 - 180051392 CCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87924393 3 - 181584905 CCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1147303 3 - 8785636 CCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1615525 3 + 27333823 CCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1885637 3 - 91010382 CCA i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7702475 3 - 21726897 CCA i colAng1.NW_012115488v1 C 0 C 0 s micMur3.chr12 84822282 3 + 108143057 CCA i micMur3.chr12 I 44 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443018 49 + 120421639 I e otoGar3.GL873536 1292761 0 - 29863360 C e aotNan1.NW_018506370v1 1410285 0 - 15889662 C e cebCap1.NW_016107830v1 333595 0 - 1393929 C e saiBol1.JH378106 44969074 0 + 71252344 C e calJac3.chr2 112523284 0 + 204313951 C e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M a score=48872.000000 s hg38.chr5_GL383530v1_alt 25010 8 + 101241 AACTTTTC s panTro5.chr5 20253770 8 + 181907262 AACTTTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20271066 8 + 183735486 AACTTTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756911 8 - 13748885 AACTTTTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53792081 8 - 163208435 AACTTTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819985 8 - 180051392 AACTTTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87924396 8 - 181584905 AACTTTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1147306 8 - 8785636 AACTTTTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1615528 8 + 27333823 AACTTTTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1885640 8 - 91010382 AACTTTTC i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7702478 8 - 21726897 AACTTTTC i colAng1.NW_012115488v1 C 0 C 0 s micMur3.chr12 84822285 8 + 108143057 ATCTTTTT i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1292761 8 - 29863360 ATTTCTTC i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443018 49 + 120421639 I e aotNan1.NW_018506370v1 1410285 0 - 15889662 C e cebCap1.NW_016107830v1 333595 0 - 1393929 C e saiBol1.JH378106 44969074 0 + 71252344 C e calJac3.chr2 112523284 0 + 204313951 C e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M a score=1639511.000000 s hg38.chr5_GL383530v1_alt 25018 150 + 101241 TCTCATCAATAAGGCAGAATAAGACCCAAGGAAAGGAATGGTGGCAGTACTTGCAAATGC-TTTGGG--GTATCTTAGAGGAGAAATTGTAGATATACTGTCCAAGATTTTAGTAGAAAACTAATCGAGTTGGGG-TCACTATCTGGGATATAG-- s panTro5.chr5 20253778 150 + 181907262 TCTCATCAATAAGGCAGAATAAGACCCAAGGAAAGGAATGGTGGCAGTACTTGCAAATGC-TTTGGG--GTATCTTAGAGGAGAAATTGTAGATATACTGTCCAAGATTTTAGTAGAAAACTAATCGAGTTGGGG-TCACTATCTGGGATATAG-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20271074 150 + 183735486 TCTCATCAATAAGGCAGAATAAGACCCAAGGAAAGGAATGGTGGCAGTACTTGCAAATGC-TTTGGG--GTATCTTAGAGGAGAAATTGTAGATATACTGTCCAAGATTTTAGTAGAAAACTAATCGAGTTGGGG-TCACTATCTGGGATATAG-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4756919 150 - 13748885 TCTCATCAATAAGGCAGAATAAGACCCAAGGAAAGGAATGGTGGCAGTACTTGCAAATGC-TTTGGG--GTATCTTAGAGGAGAAATTGTAGATATACTGTCCAAGATTTTAGTAGAAAACTAATCGAGTTGGGG-TCACTATCTGGGATATAG-- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53792089 151 - 163208435 TCTCATCAATAAGGCAGAATAAGACCCAAGGAAAGGAATGGTGGCAGTACTTGCAAATGCTTTTGGG--GTATCTTAGAGGAGAAATTGTAGATATCCTGTCCAAGATTTTAGTAGAAAACTAATCGAGTTGGGG-TCGCTATCTGGGATATAG-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87819993 150 - 180051392 TCTCATCAGTGAGGCAGAATAAGACCCAAGGAAAGGAATGGTGGCAGTACTTGCAAATGC-TTTGGG--GTATCTCAGAGGAGAAATTGTAGCTATACTGTCCAAGATTTTAGTAGAAAACTAATCGAGTTGAGG-TCACTACCTGGGATATAG-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87924404 150 - 181584905 TCTCATCAGTGAGGCAGAATAAGACCCAAGGAAAGGAATGGTGGCAGTACTTGCAAATGC-TTTGGG--GTATCTCAGAGGAGAAATTGTAGCTATACTGTCCAAGATTTTAGTAGAAAACTAATCGAGTTGAGG-TCACTACCTGGGATATAG-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1147314 150 - 8785636 TCTCATCAGTGAGGCAGAATAAGACCCAAGGAAAGGAATGGTGGCAGTACTTGCAAATGC-TTTGGG--GTATCTCAGAGGAGAAATTGTAGCTATACTGTCCAAGATTTTAGTAGAAAACTAATCGAGTTGAGG-TCACTACCTGGGATATAG-- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1615536 150 + 27333823 TCTCATCAGTGAGGCAGAATAAGACCCAAGGAGAGGAATGGTGGCAGTACTTGCAAATGC-TTTGGG--GTATCTCAGAGGAGAAATTGTAGCTATACTGTCCAAGATTTTAGTAGAAAACTAATCGAGTTGAGG-TCACTACCTGGAATATAG-- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1885648 150 - 91010382 TCTCATCAGTGAGGCAGAATAAGACCCAAGGAAAGGAATGGTGGCAGTACTTGCAAATGC-TTTGGG--GTATCTCAGAGGAGAAATTGTAGCTATACTGTCCAAGATTTTAGTAGAAAACTAATCGAGTTGAGG-TCACTACCTGGGATATAG-- i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7702486 150 - 21726897 TCTCATCAATGAGGCAGAATAAGACCCAAGGAAAGGAAAGGTGGCAGTACTTGCAAATGC-TTTGGG--GTATCTCAGAGGAGAAATTGTAGCTATACTGTCAAAGATTTTAGTAGAAAACTAATCGAGTTGAGG-TCACTATCTGGGATATAC-- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112523284 151 + 204313951 TCTCCTCAGCAAGGCAGAATAAGGCCTGAGGAAAGAAATGGTGGCATTGCTTGCAAATGC-TTTGGA--GTATCTTAAAGGAGATACTGTAGATATACTGTCCAAGATTTTAGTAGAAAACTAAACAAGTTGGGGGCCACTATCTGGGGTATAG-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44969074 151 + 71252344 TCTCATCAGCGAGGCAGAATAAGGCCCAAGGAAAGACATGGCAGCGTTACTTGCAAATGC-TTTGGA--GTATCTTAGAGGAGAAATTGTAGATATACTGTCCAAGATGTTAGTAGAAAACTGAACAAGTTGGGGACCACTATCTGGGGTATAG-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 333595 151 - 1393929 TCTCATCAGCAAGGCAGAATAAGGCCCGAGGAAAGACATGGCGGCATTACTTGCAAATGC-TTTGAA--GTATCTTAGAGGAGAAATTGTAGATATACTGTCCAAGATGTTAGTAGAAAACTAAACAAGTTGGGGGCCACTGTCTGGGGTACAG-- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1410285 151 - 15889662 TCTCATCAGCGAGGCAGAATAAGGCCCAAGGAAAGAAATGGTGGCATTACTTGCAAATGC-TTTGGA--GTATCTTAGAGGAGAAATTGTAGATATACTGTCCAAGATTTTAGTAGAAAACTAAACAAGTTGGGGGCCACTATCTGGGGTATAG-- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84822293 148 + 108143057 TCTCATCAGTGAGACAAAACAAGACCCAAGGA-AGGAATGGTGGCAG-GCTTGCAAATGA-TTTGCG--GTATCTTAGAGTAGGAATTGTAGATACACTGTCCAAAATTTTAGGAGAAAACTAATCAAGTTGACA-TCACCATATGGGGTGTAG-- i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1292769 141 - 29863360 TCTCATCCATGAGGCAGAATAAG--TCAGGGA-AGAAATGGTGACAG-GCTTGCAAATGT-TGTGTG--GCATCTTGAAGGAGGAATTATAGATATGCTGTCTGAGATTTTAGGAGA----CAATTAAGTTGATA-TCATCATATGGGGC-CAG-- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76443067 141 + 120421639 TCTTATCAGTGAGGCATAATAAGACCCAGAGAAAGA------------ACTTGCAAATGC-TTTGAGATGTAGCGTAGAGGAGTGACTGCAGATATACTGTCAAAGATTTTAGTTGAGAGCTAATCAA-CTGATT-CCACCATATAGAATGTGTGA i mm10.chr13 I 49 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e manLeu1.NW_012103732v1 1995745 1066 + 5179401 M a score=2956198.000000 s hg38.chr5_GL383530v1_alt 25168 256 + 101241 TTCATTAGTGTTTTAGGTCAGCAGTTAG-CCTGAAATTCTGtcaagtcac----ctcattgctgaaaaattttcagtggctccacattgccttttggataaaacctagactccttaGTAAGAATCACAGATCTCTGCACCTCATCCAAATTGTATCCTTGTAAATAT--CTCT-----TGCCAGTGTTAGGTAAAATTGCTTGTTCTGGCTTCGGTCAGCTATTGGTGTCCTCCAAGCTTCCTGTGTTTTTTGGCT-TTCA-TTTATTAA s panTro5.chr5 20253928 256 + 181907262 TTCATTAGTGTTTTAGGTCAGCAGTTAG-CCTGAAATTCTGtcaagtcac----ctcattgctgaaaaattttcagtggctccacattgccttttggataaaacctagactccttaGTAAGAATCACAGATCTCTGCACCTCATCCAAATTGTATCCTTGTAAATAT--CTCT-----TGCCAGTGTTAGGTAAAATTGCTTGTTCTGGCTTCGGTCAGCTATTGGTGTCCTCCAAGCTTCCTGTGTTTTTTGGCT-TTCA-TTTATTAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20271224 256 + 183735486 TTCATTAGTGTTTTAGGTCAGCAGTTAG-CCTGAAATTCTGtcaagtcac----ctcattgctgaaaaattttcagtggctccacattgccttttggataaaacctagactccttaGTAAGAATCACAGATCTCTGCACCTCATCCAAATTGTATCCTTGTAAATAT--CTCT-----TGCCAGTGTTAGGTAAAATTGCTTGTTCTGGCTTCGGTCAGCTATTGGTGTCCTCCAAGCTTCCTGTGTTTTTTGGCT-TTCA-TTTATTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4757069 256 - 13748885 TTCATTAGTGTTTTCGGTCAGCAGTTAG-CCTGAAATTCTGtcaagtcac----ctcattgctgaaaaattttcagtggctccacattgccttttggataaaacctagactccttaGTAAGAATCACAGATCTCTGCACCTCATCCAAATTGTATCCTTGTAAATAT--CTCT-----TGCCAGTGTTAGGTAAAATTGCTTGTTCTGGCTTCGGTCAGCTATTGGTGTCCTCCAAGCTTCCTGTGTTTTTTGGCT-TTCA-TTTATTAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53792240 253 - 163208435 TTCATTAGTGTTTTAGGTCAGCAGTTAG-CGTGAAAT--TGtcaagtcac----ctcattgctgaaaaattttcagtggctccacattgccttttggataaaacctagactccttaGTAAGAATCACGGATCTTTGCACCTCATCCAAATTGTATGCTTGTACATAT--CTCT-----TGCCAGTGTCAGGTAAAATTGCTTGTTCTGGCTTTGGTCAGCTATCGGTGTCCTCCAA-CTTCCTGTGTTTTTTGTCT-TTCA-TTTATTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87820143 256 - 180051392 TTCATTAGTGTTTTAGGTCAACAGTTAG-CCTGAAATTCTGtcaagtcac----ctcattactgaaaaattttcagtggctccacattgccttttggataaaacctaggttccttaGTAAGAATCACGGATCTCTGCACCTCATCTAAATTGTATCCTTGAAAATAT--CTCT-----TGCCAGTGTCAGGTAAAATTGCTTGTTCTGGCTTCGGTCAGCTATTGGtgtcctccaaacttcctgtgttttttggct-ttcg-ttttttaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87924554 256 - 181584905 TTCATTAGTGTTTTAGGTCAACAGTTAG-CCTGAAATTCTGtcaagtcac----ctcattactgaaaaattttcagtggctccacattgccttttggataaaacctaggttccttaGTAAGAATCACGTATCTCTGCACCTCATCTAAATCGTATCCTTGAAAATAT--CTCT-----TGCCAGTGTCAGGTAAAATTGCTTGTTCTGGCTTCGGTCAGCTATTGGTGTCCTCCAAACTTCCTGTGTTTTTTGGCT-TTCG-TTTTTTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1147464 256 - 8785636 TTCATTAGTGTTTTAGGTCAACAGTTAG-CCTGAAATTCTGtcaagtcac----ctcattactgaaaaattttcagtggctccacattgccttttggataaaacctaggttccttaGTAAGAATCACGGATCTCTGCACCTCATCTAAATTGTATCCTTGAAAATAT--CTCT-----TGCCAGTGTCAGGTAAAATTGCTTGTTCTGGCTTCGGTCAGCTATTGGtgtcctccaaacttcctgtgttttttggct-ttcg-ttttttaa i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1615686 256 + 27333823 TTCATTAGTGTTTTAGGTCAACAGTTAG-CCTGAAATTCTGtcaagtcac----ctcattgctgaaaaattttcagtggctccacattgccttttggataaaacctaggttccttaGTAAGAATCACGGATCTCTGCACCTCATCTAAATTGTATCCTTGAAAATAT--CTCT-----TGCCAGTGTCAGGTAAAATTGCTTGTTCTGGCTTCGGTCAGCTATTGGtgtcctccaaacttcctgtgttttttggct-ttcg-ttttttaa i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1885798 256 - 91010382 TTCATTAGTGTTTTAGGTCAACAGTTAG-CCTGAAATTCTGtcaagtcac----ctcattgctgaaaaattttcagtggctccacattgccttttggataaaacctaggttccttaGTAGGAATCACGGATCTCTGCACCTCATCTAAATTGTATCCTTGAAAATAT--CTCT-----TGCCAGTGTCAGGTAAAATTGCTTGTTCTGGCTTCGGTCAGCTATTGGTGTCCTCCAAACTTCCTGTGTTTTTTGGCT-TTCG-TTTTTTAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1996813 256 + 5179401 TTCATTAGTGTTTTAGGTCAACAGTTAG-CCTGAAATTCTGtcaagtcac----ctcattgctgaaaaattttcagtggctccacattgccttttggataaaacctaggttccttaGTAAGAATCACGGATCTCTGCACCTCATCTAAATTGTATCCTTGAAAATAT--CTCT-----TGCCAGTGTCAGGTAAAATTGCTTGTTCTGGCTTCAGTCAGCTATTGGtgtcctccaaacttcctgtgttttttggct-ttcg-ttttttaa i manLeu1.NW_012103732v1 M 1066 C 0 s colAng1.NW_012115488v1 7702636 256 - 21726897 TTCATTAGTGTTTTAGGTCAATAGTTAG-CCTGAAATTCTGTCAAG-CAC----CTCATTGCTGAAAAATTCTCAGTGGCTCCACATTGCCTTTTGGATAAAACCTAGGTTCCTTAGTAAGAATCATGGATCTCTGCACCTCATCTAAATTGTATCTTTGAAAATAT--CTCT-----TGCCAGTGTCAGGTAAAATTGCTTGTTCTGGCTTCAGTCAGCTATTGGTGTCCTCAAAACTTCCTGTGTTTTTTGGTT-TTCATTTTTTTAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112523435 258 + 204313951 TTCATTAGTGTTTTAGGTCAGCAGTTAGCCCTGAAACTCTGTCAAGTCAC----CTCACTGCTGAAAAATTTTCAGTAGCTCCACATTGCCTTTTGGATATAACCTAGATTTCCTAGTAAGAATCATGGATCTCTGCACCTCAGCCTAATTCCATCTTTGGGAATCTGCCTCT-----TGCCAGTATCAGGTAAAGTTGTTTGTTCTGGCTTTGGTCAGTTACTGGTGTCCTCCCAAGTACCTGTGC-TTTTGGCT-TTCA-TTTATTAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44969225 255 + 71252344 TTCATTAGTATTTTAGGTCAGCAGTTAGCCCTGAAACTCTGTCAAGTCAC----CTCACTGCTGAAAAAATTTCAGTAGCTCCACATTGCCTTTTGGATATAATGTAGATTTCTTAGTAAGAATCATGGATCTCTGCACCTCAGCCTAATTCTATCTTTGTAAATCTGCATCT-----TGCCAGTATCAGGTAGAGTTGCTTGTTCTGGCTTTGGTCAGTTATTGGTGTCCTCCCAACTACCTGTGC----TGGCT-TTCA-TTTATTAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 333746 258 - 1393929 TTCATTAGTGTTTTAGGGCAGCAGTTAGCCCTGAAACCCTGTCAAGTCAC----CTCACTGCTGAAAAATTTTCAGTAGCTCCACATTGCCTTTTGGATATAACATAGATTTCTTAGTAGGAATCATGGATCTCTGCACCTCAGCCTAATTCTATCTTTATAGATCTGCCTCT-----TGCCAGTATCAGGTAAAGTTGCTTGTTCTGGCTTTGGTCAGTTATTGGTGTCCTCCCAACTACCTGTGC-TTTTGGCT-TTCA-TTTGTTAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1410436 258 - 15889662 TTCGTTAGTGTTTTAGGTCAGCAGTTAGCCCTGAAACTCTGTCAAGTCAC----CTCACTGCTGAAAAATTTTCAGTAGCTCCACATTGCCTTTTGGATATAACATAGATTTCTTAGTAAGAATCATGGATCTCTGCACCTCAGCCTAATTCTATCTTTGTAAATCTGCCTCT-----TGCCAGTATCAGGTAAAGTTGCTTGTTCTGGCTTTGGTCAGTTATTGATGTCCTCCCAACTACCTGTGC-TTTTGGCT-TTCA-TTTATTAA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84822441 259 + 108143057 TTCATTAGTGTTTTAGGTCAACAATTAGCTCTGAAATTCTGCcaagtcac----cttgctgctcaaaaatttttaatggttccaccttgcctttagaataaaacttagactccttagtgagattcatggatctctacaCCTCAGCCTAATTGTACCTTTGTAAATCTGTGTCT-----TGTTTGTGTCAGATAAAATTGCTTGTTCTGGCTTTGATCAGCTCTTGGAGTCCTCCAAATTTCCTCTGCTTTATGGCT-TTCA-TTTATTAA i micMur3.chr12 C 0 I 143 s otoGar3.GL873536 1292910 237 - 29863360 CTCATTAATA-TTTAGGTCAACAATTAGCCCTGAAGTTCTGCTGAGTCACCTATCTCACTGTTCAAAAAATTTTCATGGCTCTACTTT----------------------CCTTTAGTGAGATTCATAGGTCTCCACA-TTCAGCCTAAGTATACCCTTGTAAACCTACGTCT-----GGTTCATTTCAGATAAAATTGCTTATTCTGGCTTTGACCAGCTGTTGGTACCCT-TACATGTCTTCTGCTTTATGGCT-TCC--TTTATTAA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76443208 216 + 120421639 CTTATTAGTGTTCTAGGTAAGTGACTGGCTCTCAAATTCCATCA--TCAC----TTCACTCCTA-------------GGCTCCA-------------------------------AGTGATATTTCCAGAGCTCTA-ACCTGAAGCTAGTTATCGTTTTGTAAGTCT--TTTTTTCTGTGCTCATGTCGGGGAAATTCGCCTGCCCTGTTATTGGTCAGCTCCTGATATACTCTAAATTTCCTGGGCTTCTTGGCTCCTCT-TTCCTTGA i mm10.chr13 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I a score=330779.000000 s hg38.chr5_GL383530v1_alt 25424 40 + 101241 AGCATATCA-AGTG------------------------------------------CTCATCTATGACACCCTCTGTTTTCTT s panTro5.chr5 20254184 40 + 181907262 AGCATATCA-AGGG------------------------------------------ctcatctatgacaccctctgttttctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20271480 40 + 183735486 AGCATATCA-AGTG------------------------------------------ctcatctatgacaccctctgttttctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4757325 40 - 13748885 AGCATATCA-AGTG------------------------------------------ctcatctatgacaccctctgttttctt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53792493 41 - 163208435 AGCACATCAGAGTG------------------------------------------CTCATCTATGACACCCTCTGTTTTCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87820399 40 - 180051392 agcacatcagagtg------------------------------------------ctcatctatgacgccttct-ttttctt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87924810 40 - 181584905 AGCACATCAGAGTG------------------------------------------CTCATCTATGacgccttct-ttttctt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1147720 40 - 8785636 agcacatcagagtg------------------------------------------ctcatctatgacgccttct-ttttctt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1615942 40 + 27333823 agcacatcagagtg------------------------------------------ctcatctatgacaccttct-ttttctt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1886054 40 - 91010382 AGCACATCAGAGTG------------------------------------------CTCATCTATGACACCTTCT-TTTTCTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1997069 40 + 5179401 agcacatcagagtg------------------------------------------ctcatctatgacaccttct-ttttctt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7702892 82 - 21726897 AGCACATCAGAGTGTGCTTTAAAAACCCTCTTTTTCTTCTCTACTGTGACACCCTCTTTTTCTATGACACCCTCT-TTTTCTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112523693 41 + 204313951 AGCACATCAGAGTG------------------------------------------CTCTTCTGTTACACTCTCTGTTTTCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44969480 41 + 71252344 AGCACATCAGAGTG------------------------------------------CTCTTCTATTATACCCTCTGTTTTCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 334004 41 - 1393929 AACACATCAGAGTG------------------------------------------CTCTTCTGTTACACCCTCTGTTTTCTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1410694 41 - 15889662 AGCACATCAGGGTG------------------------------------------CTCTTCTATTACACCCTCTGTTTTCTT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1293147 41 - 29863360 TGCATGCCAGACCT------------------------------------------GGGACTGACGGTGCCCACTGTTTGctt i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76443424 37 + 120421639 AGCATATCAGAGCC------------------------------------------CTGAGCTGGG----TGTCTGTTTTCCA i mm10.chr13 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822700 143 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I a score=25976.000000 s hg38.chr5_GL383530v1_alt 25464 2 + 101241 CT s panTro5.chr5 20254224 2 + 181907262 ct i panTro5.chr5 C 0 C 0 s panPan2.chr5 20271520 2 + 183735486 ct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4757365 2 - 13748885 ct i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53792534 2 - 163208435 CT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87820439 2 - 180051392 ct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87924850 2 - 181584905 ct i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1147760 2 - 8785636 ct i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1615982 2 + 27333823 ct i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1886094 2 - 91010382 CT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1997109 2 + 5179401 ct i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7702974 2 - 21726897 CT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112523734 2 + 204313951 CT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44969521 2 + 71252344 CT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 334045 2 - 1393929 CT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1410735 2 - 15889662 CT i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76443461 2 + 120421639 CT i mm10.chr13 C 0 I 970 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822700 143 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e otoGar3.GL873536 1293188 0 - 29863360 C a score=2432952.000000 s hg38.chr5_GL383530v1_alt 25466 249 + 101241 CTACtatattagttcattcttgcattgctacaaagaaatacctgagactgggtaatttataaacaaaagaggcttaattggctcacagttcttcacgctgtacaggaagcatgaggctggcatctgctc--ggcttctggggaggcctcaggaaacataatcatagcagaaggcgaagagggagcaggcacttcacatggtgaaagcaggaac-aagagagagagttgcggggag------gtgctacacacttttaa s panTro5.chr5 20254226 249 + 181907262 ctactatattagttcgttcttgcattgctacaaagaaatacctgagactgggtaatttataaacaaaagaggcttaattggctcacagttcttcacgctgtacaggaagcatgaggctggcatctgctc--ggcttctggggaggcctcaggaaacataatcatagcagaaggcgaagagggagcaggcacttcacatggtgaaagcaggaac-aagagagagagttgcggggag------gtgctacacacttttaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20271522 249 + 183735486 ctactatattagttcattcttgcattgctacaaagaaatacctgagactgggtaatttataaacaaaagaggcttaattggctcacagttcttcacgctgtacaggaagcatgaggctggcatctgctt--ggcttctggggaggcctcaggaaacataatcatagcagaaggcgaagagggagcaggcacttcacatggtgaaagcaggaac-aagagagagagtcacggggag------gtgctacacacttttaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4757367 249 - 13748885 ctactatattagttcgttcttgcattgctacaaagaaatacctgagactgggtaatttataaacaaaagaggcttaattggctcacagttcttcacgctgtccaggaagcatgaggctggcatctgctc--ggcttctggggaggcctcaggaaacataatcatagcagaaggcgaagagggagcaggcacttcacatggtgaaagcaggaac-aagagagagagttgtggggag------gtgctacacacttttaa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53792536 249 - 163208435 CTACtgtattagttcgttcttgcattgctacaaagaaatacctgagactgggtaatttataaacaaaagaggcttaattggctcacagttcttcacgctgtacaggaagcatgaggctggcatctgctc--gccttctggggagtcctcaggaaacataatcatagcagaaggcgaagagggagcaggcacttcacatggtgaaagcaggaac-aagagagagaattatggggag------gtgctacacacttttaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87820441 249 - 180051392 ctactgtattagttcattatttcattgctacaaagaaatacctgagactgggtaatttataaacaaaagaggcttaattggctcacagttcttcacgctgtacaggaagcatgaggctggcatctgttc--agcttttggggaggcctcaggaaacataatcatagcagaaggcgaagggggagcaggaacttcacatggtgaaagcaggagc-aagagagagaggtgcgaggag------gtgctacacacttttaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87924852 249 - 181584905 ctactgtattagttcattatttcattgctacaaagaaatacctgagactgggtaatttataaacaaaagaggcttaattggctcacagttcttcacgctgtacaggaagcatgaggctggcatctgttc--agcttttggggaggcctcaggaaacataatcatagcagaaggcgaagggggagcaggaacttcacatggtgaaagcaggagc-aagagagagaggtgcgaggag------gtgctacacacttttaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1147762 249 - 8785636 ctactgtattagttcattatttcattgctacaaagaaatacctgagactgggtaatttataaacaaaaaaggcttaattggctcacagttcttcacgctgtacaggaagcatgaggctggcatctgttc--agcttttggggaggcctcaggaaacataatcatagcagaaggcgaagggggagcaggaacttcacatggtgaaagcaggagc-aagagagagaggtgcgaggag------gtgctacacacttttaa i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1615984 249 + 27333823 ctactgtattagttcattatttcattgctacaaagaaatacctgagactgggtaatttataaacaaaagaggcttaattggctcacagttcttcacgctgtacaggaagcatgaggctggcatctgctc--agcttttggggaggcctcaggaaacataatcatagcagaaggcgaagggggagcaggaacttcacatggtgaaagcaggagc-aagagagagaggtgcgaggag------gtgctacacacttttaa i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1886096 248 - 91010382 CTACtgtattagttcattatttcattgctacaaagaaatacctgagactgggtaatttataaacaaaagaggcttaattggctcacagttcttcacgctgtacaggaagcatgaggctggcatctgctccaagcttttggggaggcctcaggaaac---atcatagcagaacgcgaagggggagcaggaacttcacatggtgaaagcaggagc-aagagagagaggtgcaaggag------gtgctacacacttttaa i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1997111 249 + 5179401 ctactgtattagttcattatttcattgctacaaagaaatacctgagactgggtaatttataaacaaaagaggcttaattggctcacagttcttcacgctgtacaggaagcatgaggctggcatctgctc--agcttttggggaggcctcaggaaacataatcatagcagaaggcgaagggggagcaggaacttcacatggtgaaagcaggagc-aagagagagaggtgcgaggag------gtgctacacacttttaa i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7702976 249 - 21726897 CTACtgtattagttcattattgcattgctacaaagaaatacctaagactgggtaatttatagacaaaagaggcttaattggctcacagttcttcacgctgtacaggaagcatgaggctggcatctgctc--agcttttggggaggcttcaggaaacataatcatagcagaaggtgaagggggagcaggaacttcacatggtgaaagcaggagc-gagagagagaggtgcaaagag------gtgctacacacttttaa i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112523736 250 + 204313951 CTACtgtattagtcagttcttgaattgctacaaagaaatacctgagactgagcaatttataaacaaaagaggtttaattggctcatggtttttcatgctgtgcaggaagcatgagcctggcatctgctg--ggcttccagggaggcctcaggaaacataattatagcagcaggcgaagggggagcaggcacttcacatggtgaaagcaggagt-----gagagagat-gggggagggggcggtgctacacacttttaa i calJac3.chr2 C 0 M 616 s saiBol1.JH378106 44969523 255 + 71252344 CTACtgtattagtcagttcttgcattgctacaaagaaatacctgagactgagcaatgtataaacaaaagaggtttaatgggctcatggttcttcatgctgtacaggaagcatgagcctggcatctgctg--ggcttctggggaggcctcaggaaacataattatagcagaaggcgaagggggagcaggcacttcacatggtgaaagcgggagcagcaagaaagagacggggggagggggcagtgctacacactttaa- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 334047 249 - 1393929 CTGCGgtatt----agttcttgcattgctacaaagaaatacctaagactgagcaattcataaacaaaagagatttaattggctcatggttcttcatgctagacaggaagcatgagcctggcatctgctg--ggcttctggggaggcctcaggaaacataattatagcaggaggcgaagggggagcaggcacttcacatggtgaaagcaggagt---gagagagaggtggggggagggcacggtgctgcacacttttaa i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1410737 253 - 15889662 CTACtgtattagtcagttcttgcattgctacaaagaaatacctgagactgagcaatttataaacaaaagaggtttaattggctcatggttcttcatgctgtacaggaagcatgagcctggcatctgctg--ggcttctggggaggcctgaggaaacataattatagcagaaggcgaagggggagcaggcacttcacatggtgaaagcaggagc---gagagagaggtggggggagggggcggtgctacacacttttaa i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822700 143 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443463 970 + 120421639 I e otoGar3.GL873536 1293188 0 - 29863360 C a score=326847.000000 s hg38.chr5_GL383530v1_alt 25715 42 + 101241 ccaaccagatctcacaaggacttgttcactatcgggacgacg s panTro5.chr5 20254475 42 + 181907262 ccaaccagatctcacaaggacttgttcactatcgggacgaca i panTro5.chr5 C 0 C 0 s panPan2.chr5 20271771 42 + 183735486 ccaaccagatctcacaaggacttgttcactatcgggacgaca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4757616 42 - 13748885 ccaaccagatctcacaaggactcgttcactatcgggatgaca i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53792785 42 - 163208435 ccaaccagatctctcaaggactcgatcaccatcatgacaaca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87820690 42 - 180051392 ccaagcagatctcacaaggactcgttcactattgtgaggaca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87925101 42 - 181584905 ccaagcagatctcacaaggactcgttcactattgtgaggaca i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1148011 42 - 8785636 ccaagcagatctcacaaggactcgttcactattgtgaggaca i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1616233 42 + 27333823 ccaagcagatctcacaaggactcgttcactattgtgaggaca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1886344 42 - 91010382 ccaagcagatctcacaaggactcgttcactattgtgaggaca i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1997360 42 + 5179401 ccaagcagatctcacaaggactcgttcactattgtgaggaca i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7703225 42 - 21726897 ccaagcagatctcacaaggactcgttcactattgcgaggaca i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 44969778 42 + 71252344 ccaaccctgtctcacaaggactccttcactatcgtgaggaca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 334296 42 - 1393929 ccagccctatctcacaaggcctccttcactatcgtgaggata i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1410990 42 - 15889662 ccaaccctgtctcacaaggactctttcactatcatgaggaca i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822700 143 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443463 970 + 120421639 I e otoGar3.GL873536 1293188 0 - 29863360 C e calJac3.chr2 112523986 616 + 204313951 M a score=1368448.000000 s hg38.chr5_GL383530v1_alt 25757 139 + 101241 gtaccaaggaggatggtgctaaaccacttatgagaaatctg-ccccatgatttaatcacctcccaccaggccctacctccaacattggggattacaatcatgagatttggtggagaaagacacagatccaaaccatatta s panTro5.chr5 20254517 139 + 181907262 gtaccaagggggatggtgctaaaccacttatgagaaatctg-ccccatgatttaatcacctcccaccaggccctacctccaacattggggattacaatcatgagatttggtggagaaagacacagatccaaaccatatta i panTro5.chr5 C 0 C 0 s panPan2.chr5 20271813 139 + 183735486 gtaccaagggggatggtgctaaaccacttatgagaaatctg-ccccatgatttaatcacctcccaccgggccctacctccaacattggggattacaatcatgagatttggtggagaaagacacagatccaaaccatatta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4757658 139 - 13748885 gtaccaagggggatggtgctaaaccacttatgagaaatctg-ccccatgatttaatcacctcccaccaggccctacctccaacattggggattacaatcatgagatttggtggagaaagacacagatccaaaccatatta i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53792827 134 - 163208435 gtaccaagggggatggtgctaaaccact-----gaaatctg-ccccatgatttaatcacctcccaccaggccctacctccaacactggggattacaatcatgagatttgatggagaaagatacagatccaaaccatatta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87820732 139 - 180051392 gtaccaagggggatggtgctaaatcacttacgagaaatctg-ccccatgatttaatcacctcccaccaggccctacctccaatattggggattataatcatgagatctggtgaagaaagacacagatccaaatcatatta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87925143 139 - 181584905 gtaccaagggggatggtgctaaatcacttacgagaaatctg-ccccatgatttaatcacctcccaccaggccctacctccaatattggggattataatcatgagatctggtgaagaaagacacagatccaaatcatatta i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1148053 139 - 8785636 gtaccaagggggatggtgctaaatcacttacgagaaatctg-ccccatgatttaatcacctcccaccaggccctacctccaatattggggattacaataatgagatctggtgaagaaagacaaagatccaaatcatatta i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1616275 139 + 27333823 gtaccaagggggatggtgctaaatcacttacgagaaatctg-ccccatcatttaatcacctcccaccaggccctacctccaatattggggattacaatcatgagatttggtgaagaaagacacagatccaaatcatatta i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1886386 139 - 91010382 gtaccaagggggatggtgctaaagcacttacgagaaatctg-ccccatgatttaatcacctcccaccaggccctacctccaatactggggattacagtcatgagatttggtgaagaaagacacagatccaaatcatatta i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1997402 139 + 5179401 gtaccaagggggatggtgctaaatcacttacgagaaatctg-ccccatcatttaatcacctcccaccaggccctacctccaatattggggattacaatcatgagatttggtgaagaaagacacagatccaaatcatatta i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7703267 139 - 21726897 ttaccaagggggatggtgctaaatcacttacgagaaatctg-ccccataatttaatcacctcccaccaggccctacctccaatattggggattacaatcatgagatttggtgaaaaaagacacagatccaaatcatatta i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112524603 139 + 204313951 gtaccaagg-ggatggttttaaaccacttaggagaaatctgcccccatgatttaatcacctcccactaggccctacctccaacactggggattacaatcatgagatttagtggagaaagacacagattcaaaccatatta i calJac3.chr2 M 616 C 0 s saiBol1.JH378106 44969820 139 + 71252344 gtaccaagg-ggatggttttaaaccatgtaggagaaatctgcccccatgatttaatcaactcccaccaggccctacctccaacactggggattacaattatgagatttggtggagaaagacacagatccgaaccatatta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 334338 137 - 1393929 gcaccaagg-ggacggttttaaaccacttaggagaaatctgcccccatgatttaatcacctcccaccaggccctacctccaacactgaggattacaatcatgagatttagt--agaaagacacagatccaaaccatatta i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1411032 139 - 15889662 gtaccaagg-ggttggttttaaaccacttaggagaaatgtgcccccatgatttaatcacctcccaccaggccctacctccaacactggggattacagtcatgtgatttagtggagaaagacacagatccaaaccatatta i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822700 143 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443463 970 + 120421639 I e otoGar3.GL873536 1293188 0 - 29863360 C a score=942405.000000 s hg38.chr5_GL383530v1_alt 25896 95 + 101241 TCTACTAATTTGGGTTCTCCTCACTCCTTAAGACTCAGCTAAAATTTTATATATTTTGACAAACCTTCCCTGGTGACCCCATGGAActgtctcat s panTro5.chr5 20254656 95 + 181907262 tctactaatttgggttctcctcactccttaagactcagctaaaattttacatattttgacaaaccttccctggtgaccccaTGGAActgtctcat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20271952 95 + 183735486 tctactaatttgggttctcctcactccttaagactcagctaaaattttatatattttgacaaaccttccctggtgaccccaTGGAActgtctcat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4757797 95 - 13748885 tctactaatttgggttctcctcactccttaagactcagctaaaattttatatcttttgacaaaccttccctggtgaccccaTGGAActgtctcat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53792961 95 - 163208435 TCTACTAATTTGGGTTCTCCTCACTCCTTAAGACTCAGCTAAAATTTTATATCTTTTGACAAACCTTCCCTGGTGACCCCATGGAACTGGCTCAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87820871 95 - 180051392 tctactaatttgggttatcctcactccttcagactcagctcaaattttatatcttttgacaaaccttccctggtgaccccatggaactggctcat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87925282 95 - 181584905 tctactaatttgggttatcctcactccttcagactcagctcaaattttatatcttttgacaaaccttccctggtgaccccatggaactggctcat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1148192 95 - 8785636 tctactaatttgggttatcctcactccttcagactcagctcaaattttatatcttttgacaaaccttccctggtgaccccatggaactggctcat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1616414 95 + 27333823 tgtactaatttgggttatcctcactccttcagactcagctcaaattttatatcttttgacaaaccttccctggtgaccccatggaactggctcaT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1886525 95 - 91010382 tctactaatttgggttatcctcactccttcagactcagctaaaattttatatcttttgacaaaccttccctggtgaccccatggaactggctcat i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1997541 95 + 5179401 tgtactaatttgggttatcctcactccttcagactcagctcaaattttgtatcttttgacaaaccttccctggtgaccccatggaactggctcaT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7703406 95 - 21726897 TCTACTAATTTGGGTTATCCTCACTCCTTCAGACTCAGCTAAAAATTTATATCTTTTGATGAACCTTCCCTGGTGACCCCATGGAACTGCCTCAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112524742 92 + 204313951 TCTACTAATCTGTGTT---ctcagtctttaagactcagctgcaattttgtatcttctgacaaaacttgcctggtgacccaaaggatctagctcac i calJac3.chr2 C 0 I 37 s saiBol1.JH378106 44969959 92 + 71252344 TCTACTAAACTGTGTT---CTCAGTCTTTAAGACTCAGCTACAATTTTATATCTTCTGACAAAACTTGCCTGGTGACCCAATGGAACTGGCTCAT i saiBol1.JH378106 C 0 I 144 s cebCap1.NW_016107830v1 334475 92 - 1393929 TCTACTAATCTGTGTT---ctcagtctttaagactcagctacaattttatatcttctgacaaatcttgcctggtgacccaaTGGAACTGGCTCAT i cebCap1.NW_016107830v1 C 0 I 102 s aotNan1.NW_018506370v1 1411171 92 - 15889662 TCTACTAATCTGCATT---CTCAGTCTTTAAGACTCAGCTACAATTTTATATCTTCTGACAAAACTTGCCTGGTGACCCAATGGAACTGGctcat i aotNan1.NW_018506370v1 C 0 I 108 s otoGar3.GL873536 1293188 91 - 29863360 tccactaatctgggttctgcccactctttaagactcagcccaagttttatacattctggccagccttccc-agtggccccttagaactggct--- i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822700 143 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443463 970 + 120421639 I a score=-28.000000 s hg38.chr5_GL383530v1_alt 25991 3 + 101241 ttg- s panTro5.chr5 20254751 3 + 181907262 ttg- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20272047 3 + 183735486 ttg- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4757892 3 - 13748885 ttg- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53793056 1 - 163208435 T--- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87820966 3 - 180051392 ttc- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87925377 3 - 181584905 ttc- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1148287 3 - 8785636 ttc- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1616509 3 + 27333823 Ttc- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1886620 3 - 91010382 ttc- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1997636 3 + 5179401 TTC- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7703501 3 - 21726897 TTC- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112524871 3 + 204313951 tcc- i calJac3.chr2 I 37 I 20 s otoGar3.GL873536 1293279 3 - 29863360 -tgg i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822700 143 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443463 970 + 120421639 I e aotNan1.NW_018506370v1 1411263 108 - 15889662 I e cebCap1.NW_016107830v1 334567 102 - 1393929 I e saiBol1.JH378106 44970051 144 + 71252344 I a score=-11256.000000 s hg38.chr5_GL383530v1_alt 25994 5 + 101241 tctcg s panTro5.chr5 20254754 4 + 181907262 tctc- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20272050 4 + 183735486 tctc- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4757895 4 - 13748885 tctc- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53793057 4 - 163208435 tctc- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87820969 5 - 180051392 tttca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87925380 5 - 181584905 tttca i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1148290 5 - 8785636 tttca i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1616512 5 + 27333823 tttca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1886623 5 - 91010382 tttca i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1997639 5 + 5179401 TTTCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7703504 5 - 21726897 TTGCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112524894 3 + 204313951 ccc-- i calJac3.chr2 I 20 C 0 s saiBol1.JH378106 44970195 3 + 71252344 tct-- i saiBol1.JH378106 I 144 C 0 s aotNan1.NW_018506370v1 1411371 3 - 15889662 tct-- i aotNan1.NW_018506370v1 I 108 C 0 s otoGar3.GL873536 1293282 3 - 29863360 gct-- i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822700 143 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443463 970 + 120421639 I e cebCap1.NW_016107830v1 334567 102 - 1393929 I a score=104789.000000 s hg38.chr5_GL383530v1_alt 25999 19 + 101241 ctctctc--------------tctctctctctc s panTro5.chr5 20254758 14 + 181907262 -----tc--------------tctctctctctc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20272054 14 + 183735486 -----tc--------------tctctctctctc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4757899 14 - 13748885 -----tc--------------tctctctctctc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53793061 14 - 163208435 -----tc--------------tctctttctctc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87820974 14 - 180051392 -----tt--------------tctctctctctc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87925385 14 - 181584905 -----tt--------------tctctctctctc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1148295 14 - 8785636 -----tt--------------tctctctctctc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1616517 16 + 27333823 -----tttc------------tctctctctctc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1886628 14 - 91010382 -----tt--------------tctctctctctc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1997644 14 + 5179401 -----TT--------------TCTCTCTCTCTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7703509 28 - 21726897 -----TTtctctctctctttttctctctctctc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112524897 19 + 204313951 ccccccc--------------ttcctctctctc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44970198 19 + 71252344 ctctctc--------------tctctctctctc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 334669 19 - 1393929 ctctctc--------------tctctctctcCC i cebCap1.NW_016107830v1 I 102 C 0 s aotNan1.NW_018506370v1 1411374 19 - 15889662 ctctctc--------------tttctctctctc i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1293285 8 - 29863360 -------------------------tcaatcct i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e micMur3.chr12 84822700 143 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443463 970 + 120421639 I a score=4475087.000000 s hg38.chr5_GL383530v1_alt 26018 385 + 101241 tctTTTGGCTGCATGGAAGTTTTTCTAAGTTTTTGGCCCAAACTCTC-TTATCTTTCCCCTTGGATAACTTTTACGTTTCTCTCTTTCTTCCTCTATAAGATTGATTCTTAAATTACATCTCTACTCCCATCTGGTATTGGCAGTATGTCCAGAACCTCATTTCAGAGTGTATAAAATTTAGCTTGTTACAAATGC-------CCTGTGCTGGACAAACTGAACTAGTTAATTCCTAAATATTCAttgtttttt---gttgttgttgttcttgttcttttgGATGTGCCATTTCTTCAACTAAGGGCAtcttctctttgaattctct-taaatcttgccttttcttcaaagtc----tcaaacatCATTTTATTCCTGAGGTTATCTCTGATCAACTTATT s panTro5.chr5 20254772 382 + 181907262 tctTTTGGCTGCATGGAAGTTTTTCTAAGTTTTTGGTCCAAACTCTC-TTATCTTTCCCCTTGGATAACTTTTACGTTTCTCTCTTTCTTCCTCTATAAGATTGATTCTTAAATTACATCTCTACTCCCATCTGGTATTGGCAGTATGTCCAGAACCTCATTTCAGAGTGTATAAAATTTAGCTTGTTACAAATGC-------CCTGTGCTGGACAAACTGAACTAGTTAATTCCTAAATATTCAttgtttttt---gttgttgtt---cttgttcttttgGATGTGCCATTTCTTCAACTAAGGGCAtcttctctttgaattctct-taaatcttgccttttcttcaaagtc----tcagacatCATTTTATTCCTGAGGTTATCTCTGATCAACTTATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20272068 382 + 183735486 tctTTTGGCTGCATGGAAGTTTTTCTAAGTTTTTGGTCCAAACTCTC-TTATCTTTCCCCTTGGATAACTTTTACGTTTCTCTCTTTCTTCCTCTATAAGATTGATTCTTAAATTACATCTCTACTCCCATCTGGTATTGGCAGTATGTCCAGAACCTCATTTCAGAGTGTATAAAATTTAGCTTGTTACAAATGC-------CCTGTGCTGGACAAACTGAACTAGTTAATTCCTAAATATTCAttgtttttt---gttgttgtt---cttgttcttttgGATGTGCCATTTCTTCAACTAAGGGCATCTTCTCTTTGAATTCTCT-TAAATCTTGCCTTTTCTTCAAAGTC----TCAGACATCATTTTATTCCTGAGGTTATCTCTGATCAACTTATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4757913 386 - 13748885 tctTTTGGCTGCATGGAAGTTTTTCTAAGTTTTTGGCCCAAACTCTCTTTATCTTTCCCCTTGGATAACTTTTACGTTTCTCTCTTTCTTCCTCTATAAGATTGATTCTTAAATTACATCTCTACTCCCATCTGGTATTGGCAGTATGTCCAGAACCTCATTTCAGAGTGTATAAAATTTAGCTTGCTACAAATGC-------CCTGTGCTGGACAAACTGAACTAGTTAATTCCTAAATATTTATTCTttttt---gttgttgttgttcttgttcttttggatgtgccatttcttcaactaagggcatcttctctctgaattctct-taaatcttgccttttcttcaaagtc----tcaaacatcattttattcctgaggttatctctgatcaacttatt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53793075 382 - 163208435 tctTTTGGCTGCATGGAAGGTTTTCTAAGTTTTTGGCCCAAACTCTC-TTATCTTTCCCCTTGGATAACTTTTACGTTTCTCTATCTCTTCCTCTATAAGATTGATTCTTAAATTACATTTCTCCTCCCATCTGGTATTGGCAGTATGTCCAGAACCTCATTTCAGAGTGTATAAAATTTAGCTTGTTACAAATGC-------CCTGTGCTGGACAAGCTGAACTAGTTAATTCCTAAATATTCAttgtttttt---gttgttgtt---cttgttcttttgGATATGCCATTTCTTCAACTGAGGGCAtcttctctttgaattctct-taaatcttgccttttcttcaaagtc----tcaaacatCATTTTATTCCTGAGGTTATCTCTGATCAACTTACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87820988 385 - 180051392 tctttcGGCTACATGGAAGGTTTTGTAAGTTTTTGGCCCAAACTCTC-TTATCTTTCCCCTTGGATAACTCTTAGGTTTCTCTATCTCTTCCTCTATAATATTGATTCTTAAATTACATCTCTAGTCCCATCTGGTATTGGCAGTATGTCCAGAACCTCATTTCAGAGTGTATAAAATTTAGCTTGTTacaaatgt-------cccgtgctggacaagctgaactacttaattcctaaatattcattgtttatt---tttgctgttgttcttgttcttttggatgtgccatttcttccactaagggcatattctctttgagttctct-taaatcttgccttttcttcaaagtc----tcaaacatcattttattcctgaggttatctctgatcaactgatg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87925399 385 - 181584905 tctttcGGCTACATGGAAGGTTTTCTAAGTTTTTGGCCCAAACTCTC-TTATCTTTCCCCTTGGATAACTCTTAGGTTTCTCTATCTCTTCCTCTATAATATTGATTCTTAAATTACATCTCTAGTCCCATCTGGTATTGGCAGTATGTCCAGAACCTCATTTCAGAGTGTATAAAATTTAGCTTGTTACAAATGT-------CCCGTGCTGGACAAGCTGAACTACTTAATTCCTAAATATTCATTGTTTATT---TTTGCTGTTGTTCTTGTTCTTTTGGATGTGCCATTTCTTCCACTAAGGGCATATTCTCTTTGAGTTCTCT-TAAATCTTGCCTTTTCTTCAAAGTC----TCAAACATCATTTTATTCCTGAGGTTATCTCTGATCAACTGATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1148309 385 - 8785636 tctttcGGCTACATGGAAGGTTTTCTAAGTTTTTGGCCCAAACTCTC-TTATCTTTCCCCTTGGATAACTCTTAGGTTTCTCTATCTCTTCCTCTATAATATTGATTCTTAAATTACATCTCTAGTCCCATCTGGTATTGGCAGTATGTCCAGAACCTCATTTCAGAGTGTATAAAATTTAGCTTGTTacaaatgt-------cccgtgctggacaagctgaactacttaattcctaaatattcattgtttatt---tttgctgttgttcttgttcttttggatgtgccatttcttccactaagggcgtattctctttgagttctct-taaatcttgccttttcttcaaagtc----tcaaacatcattttattcctgaggttatctctgatcaactgatg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1616533 385 + 27333823 tctttcGGCTACATGGAAGGTTTTCTAAGTTTTTGGCCCAAACTCTC-TTATCTTTCCCCTTGGATAACTCTTAGGTTTCTCTATCTCTTCCTCTATAATATTGATTCTTAAATTACATCTCTAGTCCCATCTGGTATTGGCAGTATGTCCAGAACCTCATTTCAGAGTGTATAAAATTTAGCTTGTTACAAATGT-------CCCGTGCTGGACAAGCTGAACTACTTAATTCCTAAATATTCATTGTTTATT---TTTGCTGTTGTTCTTGTTCTTTTGGATGTGCCATTTCTTCCACTAAGGGCATATTCTCTTTGAGTTCTCT-TAAATCTTGCCTTTTCTTCAAAGTC----TCAAACATCATTTTATTCCTGAGGTTATATCTGATCAACTGATG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1886642 385 - 91010382 tctttcGGCTACATGGAAGGTTTTCTAAGTTTTTGGCCCCAACTCTC-TTATCTTTCCCCTTGGATAACTCTTCGGTTTCTCTATCTCTTCCTCTATAATATTGATTCTTAAATTACATCTCTAGTCCCATCTGGTATTGGCAGTATGTCCAGAACCTCATTTCAGAGTGTATAAAATTTAGCTTGTTACAAATGT-------CCCGTGCTGGACAAGCTGAACTACTTAATTCCTAAATATTCATTGTTTATT---TTTGCTGTTGTTCTTGTTCTTTTGGATGTGCCATTTCTTCCATTAAGGGCATATTCTCTTTGAGTTCTCT-TAAATCTTGCCTTTTCTTCAAAGTC----TCAAACATCATTTTATTCCTGAGGTTATCTCTGATCAACTGATC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1997658 385 + 5179401 TCTTTCGGCTACACGGAAGGTTTTCTAAGTTTTTGGCCCAAACTCTC-TTATCTTTCCCCTTGGATAACTCTTAGGTTTCTCTATCTCTTCCTCTATAATATTGATTCTTAAATTACATCTCTAGTCCCATCTGGTATTGGCAGTATGTCCAGAACCTCATTTCAGAGTGTATAAAATTTAGCTTGTTacaaatgt-------cccgtgctggacaagctgaactacttaattcctaaatattcattgtttatt---tttgctgttgttcttgttcttttggatgtgccatttcttccactaagggcatattctctttgagttctct-taaatcttgccttttcttcaaagtc----tcaaacatcattttattcctgaggttatctctgatcaactgatg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7703537 385 - 21726897 tctttcGGCTACATGGAAGGTTTTCTAAGTTTTTGGCCCAAACTCTC-TTATCTTTCCCCTTGGATAACTCTTAGGTTTCTCTATCTCTTCCTCTATAAGATTTATTCTTAAATTACATCTCTAGTCCCATCTGGTATTGGCAGAATGTCCAGAACCTCATTTCAGAGTGTATAAAATTTAGCTTGTTACAAACGT-------CCCGTGCTGGACAAGCTGAACTACTTAATTCCTAAATATTCATTGTTTATT---TTTGCTTTTGTTCTTGTTCTTTTGGATGTGCCATTTCTTCAACTAAGGTCATATTCTCTTTGAATTCTCT-TAAATCTTGCCTTTTCTTCAAAGTC----TCCAACATCATTTTATTCCTGAAGTTATCTCTGATCAACTGATT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112524916 367 + 204313951 tctctct------------GGTTTCTAAGTTTTGGGACCAAACTCTC-TTATCTTTCCCCTTGGATAACTCTTAGATTTCTCTATCTGTTCCTCTACCATACTGATTCTCATATTGAATCTCCACTCCCATCTGGTATTGGCAGTATGTCCAGAACCTCATTTCAGAATGTATAAAATTTAGCTTGTTACAAATGT-------CCTGTGCTTGACAAGATGAACTACTTAATTCCTAAATATTCATTG---------TTTGTTGTTGTTCTTGTTCTTTTGGATGTGCCATTTCTTCAACTAAGGGCAtcttctctttgaattatct-gaaatcttgccttttcttcaaagtc----tcaaacatCATTTTATTCCTGAGGTTATCGCTGATCAACTTATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44970217 384 + 71252344 tctctctGCTGCATGTAAGGTTTTCTAAGTTTTTGGCCCAAACTCTC-TTATCTTTCCCCTTAGATAACACTTA---TCCTCTATCTGTTCCTCTACCATACTGATTCTCATATTGAATCTTCACTCCCATCTGGTATTGGCAGTATGTCCAGAACCTCATTTCAGAGCGTATAAAATTTAGCTTGTTACAAATGT-------CCTGTGCTTGACAAGATGAACTACTTAA-TCCTAAATATTCATTGTTTGTTGTTTTTGTTGTTGTTCTTGTTCTTTTAGATGTGTCATTTCTTCAACTAAGGGCAtcttctctttgaattctct-gaaatcttgccttttcttcaaagtc----tcaaacatCATTTTATTCCTGAGGTTATCACTGATCAACTTATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 334688 385 - 1393929 CCTCTAGGCTTCATGGAAGGTTTTCTAAGTTTTGGGCCCAAACTCTC-TTATCTTTCCCCTTGGATAACTCTTAGATTTCTCTATCTGTTCCTCTACTATACTGATTCTCATATTGAATCTCCACTCTCATCTGCTATTGGCAGTATGTCCAGAACCTCATTTCAGAGCGTATAAAATTTATCTTGTTACAAATGT-------CCTGTGCTTGACAAGATGAACTACTTAATTCCTAAATATTCAttgtttgtt---gttgttgttgttcttgttcttttggatgtGCCATTTCTTCAACTAAGGGCAtcttctctttgaattctct-gaaatcttgccttttcttcaaagtc----tcaaacatCATTTTATTCCTGAGGTTATCGCTGATCAACTTATT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1411393 385 - 15889662 tctctcGGCTGCATGGAAGATTTTCTAAGTTTTTGGCCCAAACTCTC-TTATCTTTCCCCTTGGATAATTCTTAGATTTCTCTATCTGTTCCTCTACCATGCTGATTCTCATATTGAATCTCCACTCCCATCTGGTATTGGCAGTATGTCCAGAACCTCATTTCAGAGTGTATAAAATTTAGCTTGTTACAAATGT-------CCCGTGCTTGACAAGATGAACTACTTAATTCCTAAATATTCAttgtttgtt---gttgttgttgttcttgttcttttggatgtGCCATTTCTTCAACTAAGGGCAtcttctctttgaattctct-gaaatcttgcctttccttcaaagtc----tcaaacgtCATTTTATTCCTGAGGTTATTGCTGATCAACTTATT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84822843 393 + 108143057 tcttttgGCTCTGTGGAGGGTTTTCCAAGTTTTTGGCCCAACCCCTC-TTATCTTCCCTCTTGGCTATCTCTTAGGTTCTTCTATCTCTTCCTCTATAAGATTGATTCTCAAATTAAATCCCTACTTCCATCTGGCATTGGCAGTACTTCCAGAACCTCATTTCAGAATGTATAAAATTTAGCTTATCACAAATAA---CCTCTCTGTACTGGACAAGCTGAACTGCTTAATGCCTAAATATTAA-TATTCATC---ATCATCTTTGCCCTTATTCTTTTGGATGAACCATTTCTTCAACTAAGAACATCTGATCTTTGGATTCTTTTtaaatattgcctgtttttcaaaatctgaatcaaataccaccttctccctgaggttatctctgatcagcttatt i micMur3.chr12 I 143 C 0 s otoGar3.GL873536 1293293 386 - 29863360 tcctttggcttcatggaagcttttccaAATTTTTGGCCCAAACCTTC-TTATCTTCCCTCTTTGATGTCTCTTAGGTTCTTCTATCTCTTCCTCTATGAGATTGATTCTTAGATTGAATCTCTATTCCTATCTGGCATTGGCAGTACTTCCAGAACCTCATTTCAGAATGTATAAAATTTAGCTAATCACAAATAATGCCCTTTCCATGCTGGACAAGCTGAACCACTGAATTCCTGA---------ATTCATT---GTCATCTCTGCTCTTGTTCTTTTGGATGGGCCATAAGAT--GTTAAGGACATCTTAGCTTTGGATTCTTTCTAAATCTTGCCTATTCTTTAAAATCTGAATCAGATACCACCTTATCCCAGGAGTTAACTATAATCAACTTATA i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14301556 4682 + 91889043 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443463 970 + 120421639 I a score=42219.000000 s hg38.chr5_GL383530v1_alt 26403 3 + 101241 GGA s panTro5.chr5 20255154 3 + 181907262 GGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20272450 3 + 183735486 GGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4758299 3 - 13748885 gga i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53793457 3 - 163208435 GGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87821373 3 - 180051392 gga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87925784 3 - 181584905 GGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1148694 3 - 8785636 gga i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1616918 3 + 27333823 GGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1887027 3 - 91010382 GGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1998043 3 + 5179401 gga i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7703922 3 - 21726897 GTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112525283 3 + 204313951 GGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44970601 3 + 71252344 GGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 335073 3 - 1393929 GGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1411778 3 - 15889662 GGA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84823236 3 + 108143057 ggc i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1293679 3 - 29863360 GGA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14306238 3 + 91889043 GGA i canFam3.chr3 I 4682 C 0 e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I e mm10.chr13 76443463 970 + 120421639 I a score=613847.000000 s hg38.chr5_GL383530v1_alt 26406 55 + 101241 AATCTCTCCATTTTTTGGTGCCTTTTGTTTGAACTACTATAATAGCA------------------------------------TTTTTTA--T------------- s panTro5.chr5 20255157 55 + 181907262 AATCTCTCCATTTTTTGGTGCCTTTTGTTTGAACTACTATAATAGCA------------------------------------TTTTTTA--T------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20272453 55 + 183735486 AATCTCTCCATTTTTTGGTGCCTTTTGTTTGAACTACTATAATAGCA------------------------------------TTTTTTA--T------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4758302 54 - 13748885 aatCTCTCCA-TTTTTGGTGCCTTTTGTTTGAACTACTATAATAGCA------------------------------------TTTTTTA--T------------- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53793460 55 - 163208435 AATCTCTCCATTTTTTGGTGCCTTTTGTTTGAACTACTATAATAGCA------------------------------------TTTTTAA--T------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87821376 54 - 180051392 aatctctccattttttgGTGCCTTTTGTTTGAACTACTATAATAGCA-------------------------------------TTTTTA--T------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87925787 54 - 181584905 AATCTCTCCATTTTTTGGTGCCTTTTGTTTGAACTACTATAATAGCA-------------------------------------TTTTTA--T------------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1148697 54 - 8785636 aatctctccattttttgGTGCCTTTTGTTTGAACTACTATAATAGCA-------------------------------------TTTTTA--T------------- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1616921 54 + 27333823 AATCTCTCCATTTTTTGGTGCCTTTTGTTTGAACTACTATAATAGCA-------------------------------------TTTTTA--T------------- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1887030 54 - 91010382 AATCTCTCCATTTTTTGGTGCCTTTTGTTTGAACTACTAT-ATAGCA------------------------------------TTTTTTG--T------------- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1998046 54 + 5179401 aatctctccattttttgGTGCCTTTTGTTTGAACTACTATAATAGCA-------------------------------------TTTTTA--T------------- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7703925 55 - 21726897 AATCTCTCCAGTTTTTGGTGCCTTTTGTTTGAACTATTATAATAGCA------------------------------------TTTTTTA--T------------- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112525286 56 + 204313951 AATCTCTCAATTTTTTTGTGCCTTTTGTTTGAACTACTATAATAGCA-------------------------------------TTTTTACAT------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44970604 56 + 71252344 AATCTCTCCATTTTTTTGTGCCTGTTGTTTGAACTTCTATAATAACA-------------------------------------TTTTTAAAT------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 335076 55 - 1393929 AACCTCTCCA-TTTTTTGTGCCTTTTGTTTGAACTACTATAATAGCA-------------------------------------TTCTTAAGT------------- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1411781 55 - 15889662 AATCTCTCCA-TTTTTTGTGCCTTTTGTTTGAACTACTATAATAGCA-------------------------------------TTTTTAAAT------------- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84823239 54 + 108143057 aatctctcca-tttttggggggttttgtttgaactactatcataaca------------------------------------attttta--t------------- i micMur3.chr12 C 0 I 305 s otoGar3.GL873536 1293682 54 - 29863360 GATATCTCTA-TTTTTTTAGCTTTTTGTTTTAACTACTGTAATAGCC------------------------------------ATTTTTA--A------------- i otoGar3.GL873536 C 0 I 58 s mm10.chr13 76444433 52 + 120421639 aGTCTCTCTATTTTTTAC--CCCTTTGCTTTAACTACTGTAATAACA-------------------------------------ATTTTA--T------------- i mm10.chr13 I 970 I 90 s canFam3.chr3 14306241 102 + 91889043 AACGTCTCAA--TGTTTATGCTTTTTGATTGAActactatagtaatttcttagaatctacttagtgtaatctgtgtgtatgacttttcca--tctcactagatcat i canFam3.chr3 C 0 C 0 e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I a score=2146621.000000 s hg38.chr5_GL383530v1_alt 26461 201 + 101241 AA--------------------GC-----------------------A-----AAAGTGCTTATCCTAGTGTCTGATATATAGTATAAT----------TTAA----GTAT---TTTAATGTATAAAAACATGATCCTG-Acttc---tgagctcttcaagcttgcattttctgagctattttagtttatgcacactaaactttccacccaactagataa---------------------------------------taagcttttagagggc--agagacatactttatatttctttgta--tTTTTTAC s panTro5.chr5 20255212 201 + 181907262 AA--------------------GC-----------------------A-----AAAGTGCTTATCCTAGTGTCTGATATATAGTATAAT----------TTAA----GTAT---TTTAATGTATAAAAACATGATCCTG-ACTTC---TGAGCTCTTCAAGCATGCATTTTCTGAGCTATTttagtttatgcatactaaactttccacccaactagataa---------------------------------------taagcttttagagggc--agagacatactgtatatttctttgta--ttttttat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20272508 201 + 183735486 AA--------------------GC-----------------------A-----AAAGTGCTTATCCTAGTGTCTGATATATAGTATAAT----------TTAA----GTAT---TTTAATGTATAAAAACATGATCCTG-ACTTC---TGAGCTCTTCAAGCATGCATTTTCTGAGCTATTttagtttatgcatactaaactttccacccaactagataa---------------------------------------taagcttttagagggc--agagacatactgtatatttctttgta--ttttttat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4758356 201 - 13748885 AA--------------------GC-----------------------A-----AAAGTGCTTATCCTAGTGTCTGATATATAGTATAAT----------TTAA----GTAT---TTTAATGTATAAAAACATGATCCTG-ACTTC---TGAGCTCTTCAAGCATGCATTTTCTGAGCTATTttagtttatgcacactaaactttccacccaactagataa---------------------------------------gaagcttttagagagc--agagacatactttatatttctttgta--ttttttac i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53793515 195 - 163208435 AA--------------------GC-----------------------A-----AAAGTGCTTATCCTAGTGTC-AATATATAGTATAAT----------TTAA------------TTAATGTATAAAAACATGATCCTG-ACTTC---TGAGCTCTTCAAGCATGCATTTTCTGAGCTATTTTAGTTTATGCACACTAAActttccacccaactagataa---------------------------------------taaacttttagagggc--agagacatactttatatttctttgta--tTTTTTAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87821430 201 - 180051392 AA--------------------GC-----------------------A-----AAAGTGCTTATCCTAGTGTCTGATATATAGTATATT----------TTAA----GTAT---TTTAATGTATAAAAACATGATCCTG-ACTTC---TGAGCTCTTCAAGCATGCATTTTCTGAGCTATTttagtttatgcacactaaactttccacccaactagataa---------------------------------------taagcttttagagggt--agagacatagtttatacttctttgta--ttttttac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87925841 201 - 181584905 AA--------------------GC-----------------------A-----AAAGTGCTTATCCTAGTGTCTGATATATAGTATATT----------TTAA----GTAT---TTTAATGTATAAAAACATGATCCTG-ACTTC---TGAGCTCTTCAAGCATGCATTTTCTGAGCTATTTTAGTTTATGCACACTAAACTTTCCACCCAACTAGATAA---------------------------------------TAAGCTTTTAGAGGGT--AGAGACATAGTTTATACTTCTTTGTA--TTTTTTAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1148751 201 - 8785636 AA--------------------GC-----------------------A-----AAAGTGCTTATCCTAGTGTCTGATATATAGTATATT----------TTAA----GTAT---TTTAATGTATAAAAACATGATCCTG-ACTTC---TGAGCTCTTCAAGCATGCATTTTCTGAGCTATTttagtttatgcacactaaactttccacccaactagataa---------------------------------------taagcttttagagggt--agagacatagtttatacttctttgta--ttttttac i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1616975 201 + 27333823 AA--------------------GC-----------------------A-----AAAGTGCTTATCCTAGTGTCTGATATATAGTATATT----------TTAA----GTAT---TTTAATGTATAAAAACATGATCCCG-ACTTC---TGAGCTCTTCAAGCATGCATTTTCTGAGCTATTttagtttatgcacactaaactttccacccaactagataa---------------------------------------taagcttttagagggt--agagacatagtttatacttctttgta--ttttttac i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1887084 201 - 91010382 AA--------------------GC-----------------------A-----AAAGTGCTTATCCTAGTGTCTGATATATAGTATATT----------TTAA----GTAT---TTTAATGTATAAAAACATGATCCCG-ACTTC---TGAGCTCTTCAAGCATGCATTTTCTGAGCTATTTTAGTTTATGCACACTAAACTTTCCACCCAACTAGATAA---------------------------------------TAAGCTTTTAGAGGGT--AGAGACATAGTTTATACTTCTTTGTA--TTTTTTAC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1998100 201 + 5179401 AA--------------------CC-----------------------A-----AAAGTGCTTATCCTAGTGTCTGATATATAGCATATT----------TTAA----GTAT---TTTAATGTATAAAAACATGATCCCG-ACTTC---TGAGCTCTTCAAGCATGCATTTTCTGAGCTATTttagtttatgcacactaaactttccacccaactagataa---------------------------------------taagcttttagagggt--agagacatagtttatacttctttgta--ttttttac i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7703980 201 - 21726897 AA--------------------GC-----------------------A-----AAAGTGCTTATCCTAGTGTCTGATATATAGTATATT----------TTAA----GTAT---TTTAATGTATAAAAACATGATCCCG-ACTTC---TGAGCTCTTCAGGCATGCATTTTCTGAGGTATTttagtttatgcacactaaactttccacccaactagataa---------------------------------------taagcttttagagggt--agagacatactttatacttctttgta--ttttttac i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112525342 238 + 204313951 AA--------------------CC-----------------------A-----AAAGTGCTTATCCTAGTGTCAGATATATACCATATT----------TTAA----GTAT---TTTAATGTATAATAACATGATCCTG-ACTTC---TGAGCTCTTCAAGCATGCATTTTCTGAACTATTT--GTTTATGTACACTGAACTTTCCACCTAACTAGATAGAGGTGGAAAGTTCAGTGTGCATAAACTAACTCTACCCTCTAATCTTATAGAGGGT--AGAGTTATACTTTATACTT-TTTGTG-TTTTTTTAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44970660 200 + 71252344 AA--------------------GC-----------------------A-----AAAGTGCTTATACTAGTGTCTGATATATACCatatt----------ttaa----gtat---tttaatatataataaCATGATCTTG-ACTTC---TGAGTTCTTCAAGCATGCGTTTTCTGAACTATTT--GTTTATATACACTGAACTTTCCACTCAAGTAGATAA---------------------------------------TAATCTTCTAGAGGGT--AGAGTCGTACTTTATACCT-TTTGTATTTTTTTTAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 335131 198 - 1393929 -A--------------------GC-----------------------A-----AAAGTACTTATCCTAGTGTCTGATATATACCATATT----------TTAA----ATAT---TTTAATGTATAATAATATGATCCTG-ACTTC---TGAGTTCTTCAAGTATGTATTTTCTGAAATATTC--ATTTATGCACACTGAACTTTCCAcccaactggataa---------------------------------------taatcttctagagggt--agagtcatactttacacct-tttgta-tTTTTTTAC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1411836 197 - 15889662 AA--------------------GC-----------------------A-----AAAGTGCTTATCCTAGTGTCTGATATATACCGTATT----------TTAA----GTGT---TTTAATGTATAATAACATGATCCTG-ACTTC---TGAGCTCTTCAAGCATGCAttttctgaattattc--atttatgcacactgaactttccacccaactaga------------------------------------------taatcttctagagggt--agagtcatactttatacct-tttgtattttttttac i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1293794 232 - 29863360 AACCCTGCTCTCTACGGCAGCTGC-----------------------A-----AAAGCACTCACCACAGCGTCTCATGTATTTTGTATTGTAAGCATTGTTAA----GTAT---TTTGATGAATACAGTGATGGTCCCT-TCTTT---TGAACTCTTCAAGCCTGCATTGTCTGAACTATTTTGGTCAA--CACCCTGAGctttctacttaactagattg---------------------------------------taagctgcttgacagtaaagagacatgcttcatacttctttcta-tTTTTTTGT i otoGar3.GL873536 I 58 C 0 s mm10.chr13 76444575 136 + 120421639 AG--------------------GC-----------------------AGCTGCAAAGTGCTTTCCATGATATCTTATATACAATATGTT----------TTAG----GTATGTATTTGAAAGA-AATAATTTGGTCTTGCATTTT---TGAGCTCTTGAAGCATGTATTTT----------------------------------------------------------------------------------------------------------------ATACCTTATAGTT-CTTGCA---TTTTCAC i mm10.chr13 I 90 C 0 s canFam3.chr3 14306343 226 + 91889043 aa--------------------gctttttaaaaacaggcacAACTGAA-----AAAGTACTTGTTGTGGTGTCTTATATATAATGTATT----------TTAAGCAAGTAT---TTAAATGAATAACAATATGATTTTG-CCTTCTTTTGAGCTCTTCAGCCATTCATTGTCTGAACTGTTTTGGTTGATATACACTGAGct----acccaactagatca---------------------------------------gaagcttcttgaggtt--agaggcatgccttatacat-tttgca--tTTTTTTT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84823293 305 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1222858 4 - 11655695 I a score=78757.000000 s hg38.chr5_GL383530v1_alt 26662 6 + 101241 AGTTTG s panTro5.chr5 20255413 6 + 181907262 agtttg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20272709 6 + 183735486 agtttg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4758557 6 - 13748885 actttg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53793710 6 - 163208435 AGTTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87821631 6 - 180051392 agtttg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87926042 6 - 181584905 AGTTTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1148952 6 - 8785636 agtttg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1617176 6 + 27333823 agtttc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1887285 6 - 91010382 AGTTTG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1998301 6 + 5179401 agtttg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7704181 6 - 21726897 agtttg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112525580 6 + 204313951 AATTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44970860 6 + 71252344 AATTTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 335329 6 - 1393929 AATTTA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412033 6 - 15889662 aatttg i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1294026 6 - 29863360 AGTTTA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76444711 6 + 120421639 AGTCTG i mm10.chr13 C 0 C 0 s canFam3.chr3 14306569 4 + 91889043 --TTTG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1222862 6 - 11655695 AATTTG i dasNov3.JH570378 I 4 C 0 e micMur3.chr12 84823293 305 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T a score=1948918.000000 s hg38.chr5_GL383530v1_alt 26668 164 + 101241 ATAAATGCTTTGC--ATCCTTTTTTTT---AAGCAACA------ATTT-GTTAATTCATAATGTTAATATAAGGTAATGACCTAGTGATAAAAAAGTAGTATGACATG--TATTGTAAAA---CATCTTTCCATTAAGCTCCCCCATCTTCAGAAAGCTATGTAGACACAGCCTGTCACTA s panTro5.chr5 20255419 165 + 181907262 ataaatgctttgc--aTCCTTTTTTTT--TAAGCAACA------ATTT-GTTAATTCATAATGTTAATATAAGGGAATGACCTAGTGATAAAAAAGTAGTATGACATG--TATTATAAAA---CATCTTTCCATTAAGCTCCCCCATCTTCAGAAAGCTATGTAGACACAGCCTGTCACTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20272715 165 + 183735486 ataaatgctttgc--aTCCTTTTTTTT--TAAGCAACA------ATTT-GTTAATTCATAATGTTAATATAAGGGAATGACCTAGTGATAAAAAAGTAGTATGACATG--TATTATAAAA---CATCTTTCCATTAAGCTCCCCCATCTTCAGAAAGCTATGTAGACACAGCCTGTCACTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4758563 165 - 13748885 ataaatgctttgc--aTCCTTTTTTTT--AAAGCAACA------ATTT-GTTAATTCATAATGTTAATATAAGGGAATGACCTAGTGATAAAAAAGTAGTATGACATG--TATTATAAAA---CATCTTTCCATTAAGCTCCCCCATCTTCAGAAAGCTATGTAGACACAGCCTGTCACTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53793716 163 - 163208435 ATAAATGCTTTGC--ATTCTTTTTTTT--AAAGCAACG------ATTT-GTTAATTCATAATGTTAATATAAGGGAATGACCTAGTGATAAAAAAGTAGTATG--ATG--TATTATAAAA---CATCCTTCCATTAAGCCCCCTCATCTTCAGAAAGCGATGTAGACACAGCCTGTCACTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87821637 166 - 180051392 ataaatgctttgc--aTTCTATTTTTT-AAAAGCAACA------ATTT-GTTAATTCACAATGTTAATATAAGGGAGTGACCTAATGCTAAAAAAGTAGTATGACATGTATATTATAAAA---CATCCTTCCATTAAG--CCCCCATCTTCAGAAAGCTATGTAGACGCAGCCTGTCACTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87926048 166 - 181584905 ATAAATGCTTTGC--ATTCTATTTTTT-AAAAGCAACA------ATTT-GTTAATTCATAATGTTAATATAAGGGAGTGACCTAATGCTAAAAAAGTAGTATGACATGTATATTATAAAA---CATCCTTCCATTAAG--CCCCCATCTTCAGAAAGCTATGTAGACACAGCCTGTCACTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1148958 166 - 8785636 ataaatgctttgc--aTTCTATTTTTT-AAAAGCAACA------ATTT-GTTAATTCATAATGTTAATATAAGGGAGTGACCTAATGCTAAAAAAGTAGTATGACATGTATATTATAAAA---CATCCTTCCATTAAG--CCCCCATCTTCAGAAAGCTATGTAGACGCAGCCTGTCACTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1617182 166 + 27333823 ataaatgctttgc--aTTCTATTTTTT-AAAAGCAACA------ATTT-GTTAATTCATAATGTTAATATAAGGGAGTGACCTAATGCTAAAAAAGGAGTATGACATGTATATTATAAAA---CATCCTTCCATTAAG--CCCCCATCTTCAGAAAGCTATGTAGACACAGCCTGTCACTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1887291 166 - 91010382 ATAAATGCTTTGC--ATTCTATTTTTT-AAAAGCAACA------ATTT-GTTAATTCATAATGTTAATATAAGGGAGTGACCTAATGCTAAAAAAGTAGTATGACGTGTATATTATAAAA---CATCCTTCCATTAAG--CCCCCATCTTCAGAAAGCTTTGTAGACACAGCCTGTCACTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1998307 166 + 5179401 ataaatgctttgc--aTTCTATTTTTT-AAAAGCAACA------ATTT-GTTAATTCATAATGTTAATATAAGGGAGTGACCTAATGCTAAAAAAGTAGTATGACATGTATATTATAAAA---CATCCTTCCATTAAG--CCCCCATCTTCAGAAAGCTATGTAGACACAGCCTGTCACTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7704187 166 - 21726897 ataattgctttgc--aTTCTATTTTTT-TAAAGCAGCA------ATTT-GTTAATTCATAATGTTAATATAAGGGAGTGACCTAGTGCTAAAAAAGTAGTATGACGTGTATATTATAAAA---CATCCTTCCATTAAG--CCCCCATCTTCAGAAAGCTATGTAGACACAGCCTGTCACTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112525586 158 + 204313951 ATAAATGCTTTGC--ATTCTTTTTTT----AAACAAGG------ATTT-ATCAATTC---ATGTTAATATAAGGGAGTTACCTAGTGATAAAAACGCAGTATGACTTG--TATTACAAAA---TATCCTTCCATTAAG--CTCCCATCTTCGAAAAGCTCTGCAGACACAGCTTTTCACTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44970866 161 + 71252344 ATAAACGCTTTGC--ATTCTTTTTTT----AAGCAAAG------TTTT-ATCAATTCATAATGTTAATATAAGGGAGTTACCTAGTGATAAAAATGCGGTATGACGTG--TATTATACAA---CATCCTTCCATTAAG--CTCCCATCTTCAGAAAGCTATGCAGACACAGCTTTTCACTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 335335 158 - 1393929 ATAAATTCTTTGC--A---TTTTTTT----AAGCAAAG------ATTT-ATCAATTCATAATGTTAATATAAGGGAGTTACCTAGTGATAAAAATGCAGTATGACGTG--TGTTATAAAA---CATCCCTCCATTAAG--CTCCCATCATCAGAAAGCTATGCAGACACAGCTTTTCACTG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412039 161 - 15889662 ataaatgctttgc--aTTCTTTTTTT----AAGCAAAT------ATTT-ATCAATTCATAATGTTAATATAAGGGAGTTACCTAGTGATAAAAATGCAGTAGGACGTG--TATTATAAAA---CATCCTTCCATTAAG--CTCCCATCTTCAGAAAGCTATGCAGACGCAGCTTTTCCCTG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84823598 161 + 108143057 ataaatgcttTGC--ATCCTT--TTAT--GAAGCAAAG------ATTT-ATTGATTGATAATGTTAATATCAGGGAGTGACTTAGTGATAAGAC-ATAGAATGATGTA--TGTTATAAAA---TATCTTTCCACTATGC-CCTCCACTTTTGGAAAGGTGTGTAGACACAGCCCATCACCC i micMur3.chr12 I 305 C 0 s otoGar3.GL873536 1294032 163 - 29863360 GTAAACGCTTTGCTAATCCTTTGTTTT--AAATTAAGG------ACTT--TTGATTGATAGCGTTAATCAAAGAAAATGACCTAGTGATGACAA-GTATTGTGATGTA--TATCACACAC---TATCTTTCCATTACG--CCTCCACCCTTGGAGAGGTATACAGACACAGCCCAATACCA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76444717 146 + 120421639 ATAAGTCCTTTAC--ACTCTTTTGTTG--AAATGAAGATTTGTTATTT-GTTATTTGATAGTGTCAATATAAGTTAATACCCTAGTG-----------------------TATTATA------TGTCCTTTCACTAGGC-TCTTCATCTTTGGGCAGGTATATAGTCCTGGTCTATTATTA i mm10.chr13 C 0 I 24 s canFam3.chr3 14306573 170 + 91889043 ATAAACCCTTTGT--ATCCTTTTTTTTTTGAAGCAAAG------ACTTAATTGATTGATAATATTAAAATAAGAGAATGATTTAGTGATGAAAAAATAGTGTAACATG--TATTATAAAATGCTATCCTTCCACTGAGT-CCTCTGTCTTTGGAAGGGTATAGAGATATAGTGCATCATCA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1222868 165 - 11655695 ATAAACACTTCAT--AT-CTATTTTTA--GAAGCAAAG------ATTT-ATTAATTGATAGCATTAATGTAAGTGAATGTCCCAGTAATAAAAA-ATAGTGTGATGGG--CATTATAAAATTTTACCCTTCCATTATAC-CCTCCATGTTTAGAAATGTCTGCAAATGTAGTTCAGTGCCA i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 584252 1800 - 10520994 T a score=3451494.000000 s hg38.chr5_GL383530v1_alt 26832 276 + 101241 GAAAGGAAATAATATTACTCTGAGACAATTGTACATGTGCCCTGATTCTAGAAGATGTTATAAACTA-TTTGTTATGATTCCTATGATTCCTATAAAGTTGCCTTTTAGCTAATACCAAGTCTGTCTCAGATGGAAATCTGATCTCTCTTTGACTGCTCTC----AT-TTCTCCC-----GTTTATCTTTTCTGAATTCTGAAGGCTGTTTAGGTTCTGAGCTTTGTCTTGGGTTTCATCGTGAAATGGGTGATGATTGATTCTATTAGGGC----TAGAAAAATAGTTTA s panTro5.chr5 20255584 276 + 181907262 GAAAGGAAATAATATTACTCTGAGACAATTGTACATGTGCCCTGATTCTAGAAGATGTTATAAACTA-TTTGTTATGATTCCTATGATTCCTATAAAGTTGCCTTTTAGCTAATACCAAGTCTGTCTCAGATGGAAATCTGATCTCTCTTTGACTGCTCTC----AT-TTCTCCC-----CTTTGTCTTTTCTGAATTCTGAAGGCTGTTTAGGTTCTGAGCTTTGTCTTGGGTTTCATCGTGAAATGGGTGATGATTGATTCTATTAGGGC----TAGAAAAATAGTTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20272880 276 + 183735486 GAAAGGAAATAATATTACTCTGAGACAATTGTACATGTGCCCTGATTCTAGAAGATGTTATAAACTA-TTTGTTATGATTCCTATGATTCCTATAAAGTTGTCTTTTAGCTAATACCAAGTCTGTCTCAGATGGAAATCTGATCTCTCTTTGACTGCTCTC----AT-TTCTCCC-----CTTTGTCTTTTCTGAATTCTGAAGGCTGTTTAGGTTCTGAGCTTTGTCTTGGGTTTCATCGTGAAATGGGTGATGATTGATTCTATTAGGGC----TAGAAAAATAGTTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4758728 275 - 13748885 GAAAGGAAATAATATTACTCTGTGACAGTTGTACATGTGCCCTGATTCTAGAAGATGTTATAAACTA-TTTGTTATGATTCCTATGATTCCTATAAAGTTGCCTTTTAGCTAATACCAAGTCTGTCTCGGATGGAAATCTGATCTCTCTTTGACTGCTCTC----AT-TTCTCCC------TTTGTCTTTTCTGAATTCTGGAGGCTGTTTAGGTTCTGAGCTTTGTCTTGGGTTTCATCGTGAAATGGGTGATGATTGATTCTATTAGGGC----TAGAAAAATAGTTTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53793879 276 - 163208435 GAAAGGAAATAATATTACTCTGAGACAATTGTACATGTGCCCTGATTCTGGAAGATGTTATAAACTA-TTTGTTATGATTCCTATGATTCCTATAAAGTTGGCTTTTAGCTAATACCAAGTCTGTCTCAGATGGAAATCTGATCTCTCTTTGACTGCCCTC----AT-TTCTCCC-----CTTTGTCTTTTCTGAATTCTGGAGGCTGTTTAGGTTCTGAGCTTTGTCTTGGGTTTCATTGTGAAATGGGTGATGATTGATTCTATTAGGGC----TAGAAAAATAGTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87821803 270 - 180051392 GAAAGGAGATAATATTACTCTGAGACAATTGTACATGTGCCCTGATTCTAGAAGATGTTATAAACTA-TTTGT---------TATGATTACTATAAAGTTGTCTTTT-GTTAATACCAAGTCTGTCTCAGATGGAAATCTGATCTCTCTTTGACTACTCTCATTTAT-TTCTCCC-----CTTTGTCTTTTCTGAATTCTGGAGTCTGTTTAGGTTCTGAGCTTTGTCTTGGGTTTAATCTTGAAGTGGGTAATGATTGATTCTATTAGGGC----GAGAAAAATAGTTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87926214 270 - 181584905 GAAAGGAGATAATATTACTCTGAGACAATTGTACATGTGCCCTGATTCTAGAAGATGTTATAAACTA-TTTGT---------TATGATTACTATAAAGTTGTCTTTT-GTTAATACCAAGTCTGTCTCAGATGGAAATCTGATCTCTCTTTGACTACTCTCATTTAT-TTCTCCC-----CTTTGTCTTTTCTGAATTCTGGAGGCTGTTTAGGTTCTGAGCTTTGTCTTGGGTTTAATCTTGAAGTGGGTAATGATTGATTCTATTAGGGC----GAGAAAAATAGTTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1149124 270 - 8785636 GAAAGGAGATAATATTACTCTGAGACAATTGTACATGTGCCCTGATTCTAGAAGATGTTATAAACTA-TTTGT---------TATGATTACTATAAAGTTGTCTTTT-GTTAATACCAAGTCTGTCTCAGATGGAAATCTGATCTCTCTTTGACTACTCTCATTTAT-TTCTCCC-----CTTTGTCTTTTCTGAATTCTGGAGGCTGTTTAGGTTCTGAGCTTTGTCTTGGGTTTAATCTTGAAGTGGGTAATGATTGATTCTATTAGGGC----GAGAAAAATAGTTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1617348 266 + 27333823 GAAAGGAGATAATATTACTCTGAGACAATTGTACATGTGCCCTGATTCTAGAAGATGTTATAAACTA-TTTGT---------TATGATTACTATAAAGTTGTCTTTT-GTTAATACCAAGTCTGTCTCAGATGGAAATCTGATCTCTCTTTGACTACTCTC----AT-TTCTCCC-----CTTTGTCTTTTCTGAATTCTGGAGGCTGTTTAGGTTCTGAGCTTTGTCTTGGGTTTAATCTTGAAGTGGGTAATGATTGATTCTATTAGGGC----TAGAAAAATAGTTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1887457 266 - 91010382 GAAAGGAGATAATATTACTCTGAGACAATTGTACATGTGCCCTGATTCTAGAAGATATTATAAACTA-TTTGT---------TATGATTACTATAAAGTTGTCTTTT-GTTAATACCAAATCTGTCTCAGATGGAAATCTGATTTCTCTTTGACTACTCTC----AT-TTCTCCC-----CTTTGTCTTTTCTGAATTCTGGAGGCTGTTTAGGTTCTGAGCTTTGTCTTAGGTTTAATCTTGAAGTGGGTAATGATTGATTCTATTAGGGC----TAGAAAAATAGTTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1998473 266 + 5179401 GAAAGGAGATAATATTACTCTGAGACAATTGTACATGTGCCCTGATTCTAGAAGATGTTATAAACTA-TTTGT---------TATGATTACTATAAAGTTGTCTTTT-GTTAATACCAAGTCTGTCTCAGATGGAAATCTGATCTCTCTTTGACTACTCTC----AT-TTCTCCC-----CTTTGTCTTTTCTGAATTCTGGAGGCTGTTTAGGTTCTGAGCTTTGTCTTGGGTTTAATCTTGAAGTGGGTAATGATTGATTCTATTAGGGC----TAGAAAAATAGTTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7704353 266 - 21726897 GAAAGGAAATAATATTACTCTGAGACAATTGTACATGTGCCCTGATTCTAGAAGATGTTATAAACTA-TTTGT---------TATGGTTACTATAAAGTTGCATTTT-GTTAATACCAAGTCTGTCTCAGATGGAAATCTGATCTCTCTTTGACTACTCTC----AT-TTCTCCC-----CTTTGTCTTTTCTGAATTCTGGAGGCTGTTTAGGTTCTGAGCTTTGTCTTGGGTTTAATCTTGAAGTGGGTGATGATTGATTCTATTAGGGC----TAGCAAAATAGTTTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112525744 268 + 204313951 GAAAGGAAAAAATACTACTCTGAGACAATTGTACAGACGCCCTGCCTCTAGAAGATGTTATAAACTATTTTTT---------TATGATTCCTATAAAGTTACCTTTGAGCTAATACCAAGTCTGCCGCCAATGGAAATCTGATCTGTCTTTGACTGCCCTC----AT-TTCTCCC-----TTTTGTCTTTTCTGAATTCTGGAGGCTGTTTAGGTTCTGAGCTTTGTCTAGGGTTTCATCTTGAAATGGGTGATGATTGATTCTATTAGGGC----TAGCAAAATAGTTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971027 267 + 71252344 GAAAGGAAAAAATACTACTCTGAGACAATTGTACAGGCACCCTGACTCTAGAAGATGTTATTAACTA-TTTGT---------TATGATTCCTATAAAGTTGTCTTTTAGCTAATACGAAGTCTGCCACCGATGGAAATCTGATCTCTCTTTAACTGCCCTC----AT-TTCTCCC-----TTTTGTCTTTTCTGAATTCTGGAGGCTGTTTAGGTTCTGAGCTTTGTCTAGGGTTTTATCTTGAAATGGGTGATGATTGATTCTATTAGGGC----TAGCAAAATAGTTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 335493 267 - 1393929 GAAAGGAAAAAATACTACTCTGAGACAATTGTACAGGCACCCTGACTCTAGAAGATGTTATAAACTA-TTTTT---------TATGATTCCTATAAAGTTGCCTTTTAGCTAATACCAAGTTTGCCACCGATGGAAATCTGATCTCTCTTTGACTGCCCTC----AT-TTCTCCC-----TTTTGTCTTTTCTGAATTCTGGAGGCTGTTTAGGTTCTGAGCTTTGTCTAGGATTTCATCTTGAAATGGGTGATGATTGACTCTGTTAGGGC----TAGCAAAATAGTTTA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412200 267 - 15889662 GAAAGGAAAAAATACTACTCTGAGACAATTGTACAGGCACCCTGACTCTAGAAGATGTTATAAACTA-TTTTT---------TATGATTCCTATAAAGTTGCCTTTTAGCTAATACCAAGTCTGCCACCGATGGAAATCCCATCTCTCTTTGACTGCCCTC----AT-TTCTCCC-----TTTTGTCTTTTCTGAATTCTGAAGGCTGTTTAGGTTCTGAGCTTTGTCTAGGGTTTCATCTTGAAATGGGTGATGATTGATTCTATTAGGGC----TAGCAAAATAGTTTA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84823759 261 + 108143057 AAAAAGAAACAATGTTACTCTGTGGCAATTGCACATGTGCACCAATTCTAGAAGACAGTATAAACTA-TTTTTT--------TGTGATTCTCATCAAGGTGCCTTTTAGCTAATACGAAGTCTGTCTCAGATGGGGATATAATCTTTCCTTGACCTTTCTC----ATTTTCTCCC-----TGTTGTCTTTCCTGAATTCTGGAAGCTG-CTGGGTTCTGAGGTTTGTGCTGGGTTCCATCTTGAAAGAGGTGATGATTAATTGTGTCAGG-----------AAATACTTTA i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1294195 266 - 29863360 AAAAGGAAATAATTTCACTCTCCAGCAATTGCATGTGCACACCAATTCTCAAAGACAGTGGAAACTA-TTTTTT--------TATGATTCTCATCAACTTGCCTTTTAGCTGAAACTGAGTCTGTCTCAGAT-GGGATCTGACCTCTCCATGACCACTCTC----ATCTCCTCCT-----TATTGTCTTTCCTGAATTCTGGAGGCTG-CTAGGTTGTGAACTCTGTCCTGGGTTCCATCTTGAAAAGGGTGATGATTGATTCTGTCAGG-C----TGGGAGAATACTTTC i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14306743 255 + 91889043 GAAAGAAAATAATGTTCCTCCTTGACATTCACACA--------AATTCTGGAAGATGGTATAGACTA-TTTTT---------TATGCTTCCCATCAAGTTGCCTTTTAGCTGGTACAAAGTCTGTCTCTGATTGGAGTCTGATCTCTCTCTGGCTGTTCTC----AT-T------------TTCTTCTTTTCTGAATCCTGGAAGCTGTTAAGGTTCTCAATTTTGTCCTTGGGTCCATCTAAGGAAAGGTGACGAGTGGTTCTCTCAGTGC-TCATAGAAAAATGCTTTA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1223033 272 - 11655695 GAAAGAAAATAGTGTTACTAGAAGAGAATTGTAAA--TACACGGATTCTACAAGA-GGTATGAACTG-TTTTTT--------TATGATTCCCACCAGG-TGTCTTCCAGGTAGTACAAAGTCTGTCTCAGAGTAGAATCTGATCTCTCC--GGCCACTCTC----ATTTTCTCCCCTTTGCTTTGCCTTTTCTGACTTCTGGAGGCTGTTGAGGGTCTGAGCTTTGTTCTGGGCTACATCTAGAAGGGATTCATGAGTGACTGTCTAAGCCCTTCATAGCAAAATGCTTTA i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e mm10.chr13 76444863 24 + 120421639 I a score=1052302.000000 s hg38.chr5_GL383530v1_alt 27108 81 + 101241 -AGCTTTCCATTTATACTGGAGCAGAACAACTACACACATCCCAAGCTTTTCTTTCACTAA-TG-TTAACCATGATCTTTCAGG s panTro5.chr5 20255860 81 + 181907262 -GGCTTTCCATTTATACTGGAGCAGAACAACTACACACATCCCAAGCTTTTCTTTCACTAA-TG-TTAACCATGATCTTTCAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273156 81 + 183735486 -GGCTTTCCATTTATACTGGAGCAGAACAACTACACACATCCCAAGCTTTTCTTTCACTAA-TG-TTAACCATGATCTTTCAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759003 81 - 13748885 -AGCTTTCCATTTATACTGGAGCAGAACAACTACACACATCCCAAGCTTTTCTTTCACTAA-TG-TTAACCATGATCTTCCAGG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794155 81 - 163208435 -AGCTTTCCATCTATACTGGAGCAGAACATCTACACACATCCCAAGCTTTTCTTTCACTAA-TG-TTAACCATGATCTTTCAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822073 81 - 180051392 -AGCCTTCCATTTATACTGGAACAGAACATCTACACACATCCCAAGCTTTTCTTTCACTAA-TG-TTAACCATGGTCTTTCCGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87926484 81 - 181584905 -AGCCTTCCATTTATACTGGAACAGAACATCTACACACATCCCAAGCTTTTCTTTCACTAA-TG-TTAACCATGGTCTTTCCGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1149394 81 - 8785636 -AGCCTTCCATTTATACTGGAACAGAACATCTACACACATCCCAAGCTTTTCTTTCACTAA-TG-TTAACCATGGTCTTTCCGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1617614 81 + 27333823 -AGCCTTCCATTTATACTGGAACAGAACATCTACACACATCCCAAGCTTTTCTTTCACTAA-TG-TTAACCATGGTCTTTCCGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1887723 81 - 91010382 -AGCCTTCCATTTATACTGGAACAGAACATCTACACACATCCCAAGCTTTTCTTTCACTAA-TG-TTAACCATGGTCTTTCAGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1998739 81 + 5179401 -AGCCTTCCATTTATACTGGAACAGAACATCTACACACATCCCAAGCTTTTCTTTCACTAA-TG-TTAACCATGGTCTTTCGGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7704619 81 - 21726897 -AGCCTGCCATTTATACTGGAACAGAACGTCTACACACATCCCAAGCTTTTCTTTCACTAA-TG-TTAACCATGGTCTTTCAGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526012 81 + 204313951 -AGCCTTCCATTTACACTGGAGCAGAACATCTACACTCATCCCAAGCTTTTCTTTTACTAA-TA-TTAACCATGGTCTTTCAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971294 81 + 71252344 -AGCCTTCCATTTGTACTACAGCAGAGCATCTACACTCATCCCAAGCTTTTCTTTTACTAA-TA-TTAACTATGGTCTTTCAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 335760 81 - 1393929 -AGCCTTCCATTTATACTGGAAAAGAACATCTACACTCATCCCAAGCCTTTCTTTTACTAA-TA-TTAACCATCGTCTTTCAGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412467 81 - 15889662 -AGCCTTCCATTTATACTGGAGCAGAACATCTACACTCATCCCAAGCTTTTCTTTTACTAA-TA-TTAACCATGGTGTCTCAGA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84824020 80 + 108143057 -AGCCTT-CGTTTATCCTGGAGTAGAACATCCACACACATCGCAAACTTTTCTTTTGCTAA-TA-CTAACCACCATCTTTCAGG i micMur3.chr12 C 0 I 384 s otoGar3.GL873536 1294461 82 - 29863360 -AGCCTTCCATTTATACCAGAGTAGACCACCTCCGCACATAGCAAGCTTTCCTTTTGCTAA-TATTTAACCACCATCTTTGAGG i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76444887 71 + 120421639 -AGTCTTCTGTATATACCATAGTACACCATCTA-----ACCCATAGATGTTCT-----TAT-TT-TCATCAATAGGTTTTCAGG i mm10.chr13 I 24 C 0 s canFam3.chr3 14306998 78 + 91889043 -GGCCTTCAGAGTATACCTGGCTAGAACATCTGTATGCAAAACATGCTTTTCCTTTACTGA-TA-TTAACTA---TCACTCAGC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1223305 80 - 11655695 AGTCTTTCAGTTTCTGTTTGAATAGAATGTCTGCATGCATGACAGACTTTTCCCTTGATAATTA-TTAATCA---TCTTCTGGA i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 584252 1800 - 10520994 T a score=126745.000000 s hg38.chr5_GL383530v1_alt 27189 10 + 101241 ACATAACTAT s panTro5.chr5 20255941 10 + 181907262 ACATAACTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273237 10 + 183735486 ACATAACTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759084 10 - 13748885 ACATAACTAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794236 10 - 163208435 ACATAACTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822154 10 - 180051392 ACATAACTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87926565 10 - 181584905 ACATAACTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1149475 10 - 8785636 ACATAACTTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1617695 10 + 27333823 ACATAACTTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1887804 10 - 91010382 ACATAACTTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1998820 10 + 5179401 ACATAACTTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7704700 10 - 21726897 ACATAACTTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526093 10 + 204313951 ACATAACTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971375 10 + 71252344 ACATAACTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 335841 10 - 1393929 ACATAACTTC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412548 10 - 15889662 ACATAACTTC i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1294543 10 - 29863360 GGATAACTTC i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76444958 10 + 120421639 ACAAAACTTA i mm10.chr13 C 0 C 0 s canFam3.chr3 14307076 9 + 91889043 -AATAACTTT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1223385 10 - 11655695 GTATAACTTC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84824100 384 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T a score=942403.000000 s hg38.chr5_GL383530v1_alt 27199 87 + 101241 AAGG--TGT-----TGTGATTAAACAGTCACGATGTCTGTTCTGC--TTTAATTTCGGGGGGATTGGGAATAAGGCAGAAA-A-------AAAGAGCTGAGAAG s panTro5.chr5 20255951 88 + 181907262 AAGG--TGT-----TGTGATTAAACAGTCACGATGTCTGTTCTGC--TTTAATTTTGGGGGGATTGGGAATAAGGCAGAAAGA-------AAAGAGCTGAGAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273247 88 + 183735486 AAGG--TGT-----TGTGATTAAACAGTCACGATGTCTGTTCTGC--TTTAATTTTTGGGGGGTTGGGAATAAAGCAGAAAGA-------AAAGAGCTGAGAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759094 88 - 13748885 AAGG--TGT-----TGTGATTAAACAGTCACGATGTCTGTTCTGC--TTTAATTTTTGGGGGATTGGGAATAAGGCAGAAAGA-------GAAGAGCTGAGAAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794246 88 - 163208435 AAGG--CGT-----TGTGATTAAACAGTCACGGTCTCTGTTCTGC--TTTATATTTTGGGGGATTGGGAATAAGGCAGAAAGA-------AAAGAGCTGAGAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822164 87 - 180051392 AAGG--TGT-----TGTGATTAAACAGTCACGGTCTCTGCTCTGC--GTTA-TTTTTGGGGGATTGGGAATAAGGCAAAAAGA-------AAAGAGCTGAGAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87926575 87 - 181584905 AAGG--TGT-----TGTGATTAAACAGTCACGGTCTCTGCTCTGC--GTTA-TTTTTGGGGGATTGGGAATAAGGCAAAAAGA-------AAAGAGCTGAGAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1149485 87 - 8785636 AAGG--TGT-----TGTGATTAAACAGTCACGGTCTCTGCTCTGC--GTTA-TTTTTGGGGGATTGGGAATAAGGCAAAAAGA-------AAAGAGCTGAGAAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1617705 87 + 27333823 AAGG--TGT-----TGTGATTAAACAGTCACGGTCTCTGCTCTGC--GTCA-TTTTGGGGGGATTGGGAATAAGACAAAAAGA-------AAAGAGCTGAGAAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1887814 87 - 91010382 AAGG--TGT-----TGTGATTAAACAGTCACGGTCTCTGCTCTGC--ATTA-TTTTTGGGGGATTGGGAATAAGGCAAAAAGA-------AAAGAGCTGAGAAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1998830 87 + 5179401 AAGG--TGT-----TGTGATTAAACAGTCACGGTCTCTGCTCTGC--GTTA-TTTTTGGGGGATTGGGAATAAGGCAAAAAGA-------AAAGAGCTGAGAAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7704710 87 - 21726897 AAGG--TGT-----TGTGATTAAACAGTCAAGGTCTCTGTTCTGT--GTTA-TTTTGGGGGGGTTGGGAATAAGGCAAAAAGG-------AAAGAGCTGAGAAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526103 94 + 204313951 AAGG--TGT-----TGTGATTAAAAAGTTGTGGTCTCTCTTCTGC--TTTA-TTTTTAGGGGACTGGGAATAGGGCAGAAAGAAAAGAGCAAAGAACTGAGAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971385 94 + 71252344 AAGG--TGT-----TGTGATTAAAAAGTCACGGTCTCTCTTCTGC--TTTA-TTTTTGGGGGATTGGGAATAAGGCAGAAAGAAACGAGCAAAGAGCTGAGAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 335851 94 - 1393929 AAGG--TGT-----TGTGATTAAAAAGTCACGGTCTCTCTTCTGC--TTTA-TTTTTGGGGGATTGGGAATAAGGCAGAAAGAAAAGAGCAAAGAGCTGAGAAG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412558 94 - 15889662 AAGG--TGT-----TGTGATTAAAAAGTCGCAGTCTCTCTTCTGC--TTTA-TTTTTGGGGGATTGGGAATAAGGCAGAAAGAAAAGAGCAAAGAGCTGAGAAG i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1294553 89 - 29863360 AAGATTTGC-----TATGGCTAAAAAGTTACTATCTCTTCTCTTC--TTTA-CCTGTTGGAGTTTGGGAGTAAGGTGGGAAGA-------AAAGAGAGTAGGAG i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76444968 74 + 120421639 AAGG--TGT-----TAT-------CACCCACTAATGCCCCTCTGC--TTTA-CAT------GTTTGGGGGTAAGACAGAAATA-------AAAGAACTGAGGAG i mm10.chr13 C 0 I 57 s canFam3.chr3 14307085 94 + 91889043 TAGG--GGTTCATGTATTACAAGAAAGCCACAATCTCTACTCTGCTTTTTA-CCTCTTACAGGTTGGGAGTGAGGAAGAAAGA-------AAAGAGCTAAAGAG i canFam3.chr3 C 0 C 0 e micMur3.chr12 84824100 384 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1223395 0 - 11655695 C a score=141664.000000 s hg38.chr5_GL383530v1_alt 27286 18 + 101241 A----------------------------------------CACATGAGA--CATAGCCT s panTro5.chr5 20256039 18 + 181907262 A----------------------------------------CACATGAGA--CATAGCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273335 18 + 183735486 A----------------------------------------CACATGAGA--CATAGCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759182 18 - 13748885 A----------------------------------------CACATGAGA--CATAGCCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794334 18 - 163208435 A----------------------------------------CACATGAGA--CATAGCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822251 18 - 180051392 A----------------------------------------CACATGAAA--CATAGCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87926662 18 - 181584905 A----------------------------------------CACATGAAA--CATAGCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1149572 18 - 8785636 A----------------------------------------CACATGAAA--CGTAGCCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1617792 16 + 27333823 A----------------------------------------CAC--GAAA--CATAGCCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1887901 18 - 91010382 A----------------------------------------CACATGAAA--CATAGCCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1998917 18 + 5179401 A----------------------------------------CACATGAAA--CATAGCCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7704797 18 - 21726897 A----------------------------------------CACATGAAA--CATAGCCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526197 18 + 204313951 A----------------------------------------CACATGAGA--TATGGCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971479 18 + 71252344 A----------------------------------------CACATAAGA--CATGGCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 335945 18 - 1393929 A----------------------------------------CACATAAGA--CATGGCCT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412652 18 - 15889662 A----------------------------------------CACATAAGA--CATGGCCT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1294642 56 - 29863360 AAAA--GAAATCCTGGTGGTGCCCCAGTAAGATAGGATTTCTACACAAAA--CACTGGCC i otoGar3.GL873536 C 0 I 1 s canFam3.chr3 14307179 40 + 91889043 -AAAAGAAAAATATAGTGGTGC-------------------CACAGGAAAATCATAGGCT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84824100 384 + 108143057 I e proCoq1.NW_012147189v1 584252 1800 - 10520994 T e dasNov3.JH570378 1223395 0 - 11655695 C e mm10.chr13 76445042 57 + 120421639 I a score=108670.000000 s hg38.chr5_GL383530v1_alt 27304 10 + 101241 AATCACAT--------------CT s panTro5.chr5 20256057 10 + 181907262 AATCACAT--------------CT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273353 10 + 183735486 GATCACAT--------------CT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759200 10 - 13748885 AATCACAT--------------CT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794352 10 - 163208435 AATCACAT--------------CT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822269 10 - 180051392 AATCAAAT--------------CT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87926680 10 - 181584905 AATCAAAT--------------CT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1149590 10 - 8785636 AATCAAAT--------------CT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1617808 10 + 27333823 AATCAAAT--------------CT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1887919 10 - 91010382 AATCAAAT--------------CT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1998935 10 + 5179401 AATCAAAT--------------CT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7704815 10 - 21726897 AATCAAAT--------------CT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526215 10 + 204313951 AATCAAAT--------------CT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971497 9 + 71252344 AATCAAAT--------------C- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 335963 10 - 1393929 AATCAAAT--------------CT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412670 10 - 15889662 AATCCAAT--------------CT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 582452 10 - 10520994 AATCAAAT--------------CT i proCoq1.NW_012147189v1 T 1800 C 0 s otoGar3.GL873536 1294699 10 - 29863360 AGTCAAAT--------------CT i otoGar3.GL873536 I 1 C 0 s canFam3.chr3 14307219 24 + 91889043 AGTCACATGAAATATGGGCACACT i canFam3.chr3 C 0 I 209 e micMur3.chr12 84824100 384 + 108143057 I e dasNov3.JH570378 1223395 0 - 11655695 C e mm10.chr13 76445042 57 + 120421639 I a score=234915.000000 s hg38.chr5_GL383530v1_alt 27314 16 + 101241 TCTGAGCTTGAATTTA s panTro5.chr5 20256067 16 + 181907262 TCTGAGCTTGAATTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273363 16 + 183735486 TCTGAGCTTGAATTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759210 16 - 13748885 TCTGAGCTTGAATTTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794362 16 - 163208435 TCTGAGCTTGAATTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822279 16 - 180051392 TCTGAGCTTGGATTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87926690 16 - 181584905 TCTGAGCTTGGATTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1149600 16 - 8785636 TCTGAGCTTGGATTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1617818 16 + 27333823 TCTGAGCTTGAATTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1887929 16 - 91010382 TCTGAGCTTGAATTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1998945 16 + 5179401 TCTGAGCTTGAATTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7704825 16 - 21726897 TCTGAGCTTGAATGTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526225 16 + 204313951 TCCGAGCTTGAATTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971506 16 + 71252344 TCTGAGCTTGAATTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 335973 16 - 1393929 TCCGAGCTTGAATTTA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412680 16 - 15889662 TCCGAGCTTGAATTTA i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 582462 16 - 10520994 TCTGAGCTTGAATTTA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1294709 16 - 29863360 TCTGAGCTTCAATTTA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14307452 16 + 91889043 TCTAAGCTTGAATTTA i canFam3.chr3 I 209 C 0 e micMur3.chr12 84824100 384 + 108143057 I e dasNov3.JH570378 1223395 0 - 11655695 C e mm10.chr13 76445042 57 + 120421639 I a score=151892.000000 s hg38.chr5_GL383530v1_alt 27330 11 + 101241 CCAGTTGTAGC s panTro5.chr5 20256083 11 + 181907262 CCAGTTGTAGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273379 11 + 183735486 CCAGTTGTAGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759226 11 - 13748885 CCAGTTGTAGC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794378 11 - 163208435 CCAGTTGTAGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822295 11 - 180051392 CCAGTTGTAGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87926706 11 - 181584905 CCAGTTGTAGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1149616 11 - 8785636 CCAGTTGTAGC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1617834 11 + 27333823 CCAGTTGTAGC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1887945 11 - 91010382 CCAGTTGTAGC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1998961 11 + 5179401 CCAGTTGTAAC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7704841 11 - 21726897 CCAGTTGTAGC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526241 11 + 204313951 CCAGTTATAGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971522 11 + 71252344 CCAGTTATGGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 335989 11 - 1393929 CCAGTTATAGC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412696 11 - 15889662 CCAGTTATAGC i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 582478 11 - 10520994 CCAGGTATAGC i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1294725 11 - 29863360 CCAGTTATACC i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76445099 11 + 120421639 CGAGTTTTCGG i mm10.chr13 I 57 C 0 s canFam3.chr3 14307468 11 + 91889043 CCAGTTTCACC i canFam3.chr3 C 0 C 0 e micMur3.chr12 84824100 384 + 108143057 I e dasNov3.JH570378 1223395 0 - 11655695 C a score=858413.000000 s hg38.chr5_GL383530v1_alt 27341 73 + 101241 AGGATT-------------TAAAGTGTCAGGTTCT------TATTTTTTCTTAAAACTAAATAAATAAATCAAAT----TCTGCCTCGGTGGCCTC s panTro5.chr5 20256094 73 + 181907262 AGGATT-------------TAAAGTGTCAGGTTCT------TATTTTTTCTTAAAACTAAATAAATAAATCAAAT----TCTGCCTCGGTGGCCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273390 73 + 183735486 AGGATT-------------TAAAGTGTCAGGTTCT------TATTTTTTCTTAAAACTAAATAAATAAATCAAAT----TCTGCCTCGGTGGCCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759237 73 - 13748885 AGGATT-------------TAAAGTGTCAGGTTCT------TATTTTTTCTTAAAACTAAATAAATAAATCAAAT----TCTGCCTCGGTGGCCTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794389 73 - 163208435 AGGATT-------------TAAAGTGTCAGGTTCT------TATTTCTTCTTAAAACTAAATAAATAAATCAAAT----TCTGCCTCGGTGGCCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822306 73 - 180051392 AGGATT-------------TAAGGTGTCAGGTTCT------TATTGTTTCTTAAAACTAAATCAATAAATCAAAT----TCTGCCTCAGTGGCCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87926717 73 - 181584905 AGGATT-------------TAAGGTGTCAGGTTCT------TATTGTTTCTTAAAACTAAATAAATAAATCAAAT----TCTGCCTCAGTGGCCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1149627 73 - 8785636 AGGATT-------------TAAGGTGTCAGGTTCT------TATTTTTTCTTAAAACTAAATAAATAAATCAAAT----TCTGCCTCAGTGGCCTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1617845 73 + 27333823 AGGATT-------------TAAGGTGTCAGGTTCT------TATTTTTTCTTAAAACTAAATAAATAAATCAAAT----TCTGCCTCAGTGGCCTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1887956 72 - 91010382 AGGATT-------------TAAGGTGTCAGGTTCT------TATTTTGAATAAA-ACTAAATAAATAAATCAAAT----TCTGCCTCAGTGGCCTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1998972 69 + 5179401 AGGATT-------------TAAGGTGTCAGGTTCT------TATTTTTTCTTAA----AACTAAATAAATCAAAT----TCTGCCTCAGTGGCCTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7704852 73 - 21726897 AGGATT-------------TAAGGTGTCAGGTTCT------TATTTTTTCTTAAAACTAAATAAATCAATCAAAT----TCTGCCTCAGTGGCCTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526252 79 + 204313951 AGTATT-------------TAAGATGTCAGGTTCAGGTTCTTATCTTTTCTTAAAACTAAGTAAATAAATTGAAT----TCTGCCTTGGTGGCCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971533 73 + 71252344 AGTATT-------------TAAGATGTCAGGTTTG------TATTTTTTCTTAAAACTAAATAAATAAATCAAAT----TCTGCCTTGGTGGCCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336000 73 - 1393929 AGTATT-------------TAAGATGTCAGGTTCG------TATTTTACCTTAAAACTAAATAAATAAATCAAAT----TCTGCCTTGGTGGCCTC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412707 73 - 15889662 AGTATT-------------TAAGATGTCAGGTTCT------TATTTTTTCTTAAAACTAAATAAATAAATCAAAT----TCTGCCTTCGTGGCCTC i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 582489 73 - 10520994 AGGATT-------------CGAGGTGTCAGGTTTT------TATTTTTTCCTAAAACTAAAGAAATGAATCGAAT----TCTGCCTTGGTGACCTC i proCoq1.NW_012147189v1 C 0 T 2852 s mm10.chr13 76445110 90 + 120421639 AGGATTACCCTGCAGTTTATAAAGTATTAATTTCT------CATTTTTCCCCTAAACTAATTAAATGAATCTGATTAAATTTGTTTCACTGGATTC i mm10.chr13 C 0 C 0 s canFam3.chr3 14307479 69 + 91889043 AGGATT-------------CAAACTGTCAGTTTCT------AATTTTTTTTCTA----AAAGAAATGCATCAGAT----CTTTCCCTTGTGGTCTG i canFam3.chr3 C 0 C 0 e micMur3.chr12 84824100 384 + 108143057 I e dasNov3.JH570378 1223395 0 - 11655695 C e otoGar3.GL873536 1294736 0 - 29863360 C a score=483394.000000 s hg38.chr5_GL383530v1_alt 27414 44 + 101241 CAAGGCTTAATGGGC----CTGAGTCTATTTGTCTAAGAGGCTGACAG s panTro5.chr5 20256167 44 + 181907262 CAAGGCTTAATGGGC----CCGAGTCTATTTGTCTAAGAGGCTGACAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273463 44 + 183735486 CAAGGCTTAATGGGC----CTGAGTCTATTTGTCTAAGAGGCTGACAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759310 44 - 13748885 CAAGGCTTAATGGGC----CTGAGTCTATTTGTCTAAGAGGCTGACAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794462 44 - 163208435 CAAGACTTAATGGGC----CTGAGTCTATTTGTCTAAGAGGCTGACGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822379 44 - 180051392 CAAGGCTTAATGGGC----CTGCGTCTATTTGTCTCAGAGGCTGACAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87926790 44 - 181584905 CAAGGCTTAATGGGC----CTGCGTCTATTTGTCTCAGAGGCTGACAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1149700 44 - 8785636 CAAGGCTTAATGGGC----CTGCGTCTATTTGTCTAAGAGGCTGACAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1617918 44 + 27333823 CAAGGCTTAATGGGC----CTGCGTCTATTTGTCTAAGAGGCTGACAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1888028 44 - 91010382 CAAGGCTTAATGGGC----CTGCATCTATTTGTCTAAGAGGCTGACAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1999041 44 + 5179401 CAAGGCTTAATGGGC----CTGCGTCTATTTGTCTAAGAGGCTGACAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7704925 44 - 21726897 CAAGGCTTAATGGGC----CTGCGTCTGTTTGTCTAAGAGGCTGACAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526331 44 + 204313951 CAAGGCCTTATGGGC----CTGAGTCTATTTGTCTAGGAGGCTGACAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971606 44 + 71252344 CAAGGCCTTATGGGC----CTGAGTCTATTTGCCCAGGAGGCTGACAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336073 44 - 1393929 CAGGGCCTTATGGGC----CTGAGTCTATTTGTCTAGGAGGCTGACAG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412780 44 - 15889662 CAAGGCCTTATGGGC----CTGAGTCTATTTGTCTAGGAGGCTGACAG i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76445200 40 + 120421639 CAAGAC---ATGGG-----TTCAGTGTGTTTGCATGAGaggcaggaag i mm10.chr13 C 0 I 396 s canFam3.chr3 14307548 44 + 91889043 TGAGGCTTAGTAGGCTTGTCTGAGTCTATTTGTCT-GGAGGCAGA--- i canFam3.chr3 C 0 C 0 e micMur3.chr12 84824100 384 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e dasNov3.JH570378 1223395 0 - 11655695 C e otoGar3.GL873536 1294736 0 - 29863360 C a score=381012.000000 s hg38.chr5_GL383530v1_alt 27458 36 + 101241 AGGCTGGGAGA-GGGGTCTGGATGAGAGCTTTTCATC s panTro5.chr5 20256211 36 + 181907262 AGGCTGGGAGA-GGGGTCTGGATGAGAGCTTTTCATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273507 36 + 183735486 AGGCTGGGAGA-GGGGTCTGGATGAGAGCTTTTCATC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759354 36 - 13748885 AGGCTGGGAGA-GGGGTCTGGATGAGAGCTTTTCATC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794506 36 - 163208435 AGGCTGGGAGA-GGGGTCTGGATGAGAGCTTTTCATC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822423 36 - 180051392 AGGCTGGGAGA-GGGGTCTGGAAGAGAGCTTTTCATC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87926834 36 - 181584905 AGGCTGGGAGA-GGGGTCTGGAAGAGAGCTTTTCATC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1149744 36 - 8785636 AGGCTGGGAGA-GGGGTCTGGAAGAGAGCTTTTCATC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1617962 36 + 27333823 AGGCTGGGAGA-GGGGTCTGGAAGAGAGCTTTTCATC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1888072 36 - 91010382 AGGCTGGGAGA-GGGGTCTGGAAGAGAGCTTTTCATC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1999085 37 + 5179401 AGGCTGGGAGAGGGGGTCTGGAAGAGAGCTTTTCATC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7704969 36 - 21726897 AGGCTAGGAGA-GGGGTCTGGAAGAGAGCTTTTCATC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526375 36 + 204313951 AGGCTGGGAGA-GGGGTCTGGATGAGAACTTCTCATC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971650 36 + 71252344 AGGCTGGGAGA-GGGGTCTGGATGAGAACTTCTCATC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336117 36 - 1393929 AGGCTGAGAGA-GGGGTCTGGATGAGAACTTCTCATC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412824 36 - 15889662 AGGCTGGGAGA-GGGGTCTGGATGAGAACTTCTCATC i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14307592 32 + 91889043 AGACTGGAAGG-GG---TTTTAAGAGACCTTTAATT- i canFam3.chr3 C 0 C 0 e micMur3.chr12 84824100 384 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e dasNov3.JH570378 1223395 0 - 11655695 C e mm10.chr13 76445240 396 + 120421639 I e otoGar3.GL873536 1294736 0 - 29863360 C a score=131676.000000 s hg38.chr5_GL383530v1_alt 27494 14 + 101241 CAGC-ATCTCCTCTC s panTro5.chr5 20256247 14 + 181907262 CAGC-ATCTCCTCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273543 14 + 183735486 CAGC-ATCTCCTCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759390 14 - 13748885 CAGC-ATCTCCTCTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794542 14 - 163208435 CAGC-ATCTCCTCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822459 15 - 180051392 CAACAATCTCCTCTC i rheMac8.chr6 C 0 I 263 s macFas5.chr6 87926870 15 - 181584905 CAACAATCTCCTCTC i macFas5.chr6 C 0 I 5 s macNem1.NW_012011400v1 1149780 15 - 8785636 CAACAATCTCCTCTC i macNem1.NW_012011400v1 C 0 I 263 s cerAty1.NW_012002401v1 1617998 15 + 27333823 CAACAATCTCCTCTC i cerAty1.NW_012002401v1 C 0 I 263 s chlSab2.chr4 1888108 15 - 91010382 CAACAATCTCCTCTC i chlSab2.chr4 C 0 I 260 s manLeu1.NW_012103732v1 1999122 15 + 5179401 CAACAATCTCCTCTC i manLeu1.NW_012103732v1 C 0 I 264 s colAng1.NW_012115488v1 7705005 15 - 21726897 CAACAATCTCCTCTC i colAng1.NW_012115488v1 C 0 I 275 s calJac3.chr2 112526411 14 + 204313951 CAAT-ATCTTCTCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971686 14 + 71252344 CAAC-ATCTTCTCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336153 14 - 1393929 CAGT-ATCTTCTCTC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412860 14 - 15889662 CAAC-ATCTTCTCTC i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76445636 14 + 120421639 CAGT-ATCCCTTCTC i mm10.chr13 I 396 I 1 s canFam3.chr3 14307624 13 + 91889043 CAG--AGCCTCTTTC i canFam3.chr3 C 0 C 0 e micMur3.chr12 84824100 384 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e dasNov3.JH570378 1223395 0 - 11655695 C e otoGar3.GL873536 1294736 0 - 29863360 C a score=56101.000000 s hg38.chr5_GL383530v1_alt 27508 23 + 101241 TGTATGG-AATGTAATCTTTTCTT- s panTro5.chr5 20256261 23 + 181907262 TGTATGG-AATGTAATCTTTTCTT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273557 23 + 183735486 TGTATGG-AATGTAATCTTTTCTT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759404 23 - 13748885 TGTATGG-AATGTAATCTTTTCTT- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794556 23 - 163208435 TGTATGG-TATCTAATCTTTTATT- i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87926890 19 - 181584905 ----TCT-AAGGGCAtcttctctt- i macFas5.chr6 I 5 I 239 s calJac3.chr2 112526425 23 + 204313951 TGTACAG-TATCTAGTCTTTTCTT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971700 23 + 71252344 TGTGCAG-TATCTAGTCTTTTCTT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336167 23 - 1393929 TGTGCAG-TATCTGGCCTTTTCTT- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412874 23 - 15889662 TGTGCAA-TATCTAGTCTTTTCTT- i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76445651 23 + 120421639 TTTGCAC-TTGCTAATCTCATCCA- i mm10.chr13 I 1 C 0 s canFam3.chr3 14307637 25 + 91889043 TTTATAGTTATCTAATATCTTCTTT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84824100 384 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e dasNov3.JH570378 1223395 0 - 11655695 C e otoGar3.GL873536 1294736 0 - 29863360 C e colAng1.NW_012115488v1 7705020 275 - 21726897 I e manLeu1.NW_012103732v1 1999137 264 + 5179401 I e chlSab2.chr4 1888123 260 - 91010382 I e cerAty1.NW_012002401v1 1618013 263 + 27333823 I e macNem1.NW_012011400v1 1149795 263 - 8785636 I e rheMac8.chr6 87822474 263 - 180051392 I a score=125135.000000 s hg38.chr5_GL383530v1_alt 27531 12 + 101241 TTTGAGGGGCCT s panTro5.chr5 20256284 12 + 181907262 TTCGAGTGGCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273580 12 + 183735486 TTTGAGTGGCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759427 12 - 13748885 TTTGAGTGGCCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794579 12 - 163208435 TTTGAGTGGCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822737 12 - 180051392 TTTGAGTGGCCT i rheMac8.chr6 I 263 C 0 s macFas5.chr6 87927148 12 - 181584905 TTTGAGTGGCCT i macFas5.chr6 I 239 C 0 s macNem1.NW_012011400v1 1150058 12 - 8785636 TTTGAGTGGCCT i macNem1.NW_012011400v1 I 263 C 0 s cerAty1.NW_012002401v1 1618276 12 + 27333823 TTTGAGTGGCCT i cerAty1.NW_012002401v1 I 263 C 0 s chlSab2.chr4 1888383 12 - 91010382 TTTGAGTGGCCT i chlSab2.chr4 I 260 C 0 s manLeu1.NW_012103732v1 1999401 12 + 5179401 TTTGAGTGGCCT i manLeu1.NW_012103732v1 I 264 C 0 s calJac3.chr2 112526448 12 + 204313951 TTTGAGTGGCAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971723 12 + 71252344 TTTGAGTGGCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336190 12 - 1393929 TTTGAGTGGCAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412897 12 - 15889662 TTTGAGTGGCAT i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76445674 10 + 120421639 --TGAGTGGCTG i mm10.chr13 C 0 C 0 s canFam3.chr3 14307662 12 + 91889043 TTTGAATAGCTT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84824100 384 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e dasNov3.JH570378 1223395 0 - 11655695 C e otoGar3.GL873536 1294736 0 - 29863360 C e colAng1.NW_012115488v1 7705020 275 - 21726897 I a score=111712.000000 s hg38.chr5_GL383530v1_alt 27543 9 + 101241 AAAATCCCG s panTro5.chr5 20256296 9 + 181907262 AAAATCCCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273592 9 + 183735486 AAAATCCCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759439 9 - 13748885 AAAATCCCG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794591 9 - 163208435 AAAATCCCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822749 9 - 180051392 AAAATCCCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87927160 9 - 181584905 AAAATCCCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1150070 9 - 8785636 AAAATCCCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1618288 9 + 27333823 AAAATCCCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1888395 9 - 91010382 AAAATCCCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1999413 9 + 5179401 AAAATCCCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7705295 9 - 21726897 AAAATCCAA i colAng1.NW_012115488v1 I 275 C 0 s calJac3.chr2 112526460 9 + 204313951 AAAATTCCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971735 9 + 71252344 AAAATTCCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336202 9 - 1393929 AAAATTCCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412909 9 - 15889662 AAAATTCCA i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76445684 9 + 120421639 GAAATTTCA i mm10.chr13 C 0 I 6 s canFam3.chr3 14307674 9 + 91889043 AAAATCCTA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1223395 9 - 11655695 AAAATGCTT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84824100 384 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e otoGar3.GL873536 1294736 0 - 29863360 C a score=1219483.000000 s hg38.chr5_GL383530v1_alt 27552 99 + 101241 TTGTATTTTGTAGTCTCCCCTTTATCTGATATTGCATAGCTGTTTTGTTAATTG---CTTCAGGAAA----------------------------TGAAGGG-TTCTTTCT---TGACCTCATGTGGAAAGTAA s panTro5.chr5 20256305 98 + 181907262 TTGTATTTTGTAGTCTCCCCTTTATCTGATATT-CATAGCTGTTTTGTTAATTG---CTTCAGAAAA----------------------------TGAAGGA-TTCTTTCT---TGACCTCATGTGGAAAGTAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273601 99 + 183735486 TTGTATTTTGTAGTCTCCCCTTTATCTGATATTGCATAGCTGTTTTGTTAATTG---CTTCAGAAAA----------------------------TGAAGGA-TTCTTTCT---TGACCTCATGTGGAAAGTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759448 99 - 13748885 TTGTATTTTGTAGTCTCCCCTTTATCTGATATTGCATAGCTGTTTTGTTAATTG---CTTCGGAAAA----------------------------TGAAGGC-TTCTTTCT---TGACCTCATGTGGAAAGTAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794600 99 - 163208435 TTGTATTTTGTAGTCTCCCCTTTATCTGATATTGCATGGCTGTTTTGTTAATTG---CTTCAGAAAA----------------------------TGAAGGG-TTCTCTCT---TGACCTCATGTGGAAAGTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822758 99 - 180051392 TTGTATTTTGTAGTCTCCCCTTTGTCTGAAATTGCATAGCTGTTTTGTTAATTG---CTTCAGGAAA----------------------------TGAAGGG-TTCTTTCT---TGACCTCTTGTGGAAAGTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87927169 99 - 181584905 TTGTATTTTGTAGTCTCCCCTTTGTCTGAAATTGCATAGCTGTTTTGTTAATTG---CTTCAGGAAA----------------------------TGAAGGG-TTCTTTCT---TGACCTCTTGTGGAAAGTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1150079 99 - 8785636 TTGTATTTTGTAGTCTCCCCTTTGTCTGAAATTGCATAGCTGTTTTGTTAATTG---CTTCAGGAAA----------------------------TGAAGGG-TTCTTTCT---TGACCTCTTGTGGAAAGTAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1618297 99 + 27333823 TTGTATTTGGTAGTCTCCCCTTTGTCTGAAATTGCATAGCTGTTTTGTTAATTG---CTTCAGGAAA----------------------------TGAAGGG-TTCTTTCT---TGACCTCTTGTGGAAAGTAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1888404 99 - 91010382 TCGTATTTTGTAGTCTCCCCTTTGTCTGAAATTGCATAGCTGTTTTGTTAATTG---CTTCAGGAAA----------------------------TGAAGGG-TTCTTTCT---TGACCTCTTGTGGAAAGTAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1999422 99 + 5179401 TTGTATTTTGTAGTCTCCCCTTTGTCTGAAATTGCATAACTGTTTTGTTAATTG---CTTCAGGAAA----------------------------TGAAGGG-TTCTTTCT---TGACCTCTTGTGGAAAGTAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7705304 102 - 21726897 TTGTATTTTGTAGTCTCCCCTTTGTCTGAAATTGCATAGCTGTTTTGTTAATTGGAAATGAAGGAAA----------------------------TGAAGGG-TTCTTTCT---TGACCTCTTGTGGAAAGTAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526469 94 + 204313951 TTGTATTTTGTAGTCTCTCCTTTGTCTAAAATTTTATAGCTGTTTTGTCAATTA---TTTCAGAAAA----------------------------TGAGGGG-TTCTTTCT---TGACCTCATGTGGAA----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971744 99 + 71252344 TTGTATTTTGTAGTCTCTCCTTTGTCTAAAATTTTATAGCTGTTTTGTCAATTG---TTTCAGAAAA----------------------------TGAAGGG-TTCTTTCA---AGACTTCATGTGGAAAGTAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336211 127 - 1393929 TTGTATTTTGTAGTCTCTCCTTTGTCTAAAATTTTATAGCTGTTTTGTCAATTG---TTTCAGAAAAAGAAGGGttctttttttttttttttttttGAAGGA-TTCTTTCT---TGACCTCATGTGGAAAGTAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1412918 99 - 15889662 TTGTATTTTGTAGTCTCTCCTTTGCCTAAAATTTTATAGCTGTTTTGTCAATTG---TTTCAGAAAA----------------------------TGAAGGG-TTCTTTCT---TGACCTCATGTGGAAAGTAA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84824484 100 + 108143057 TTGTATTTTGTAGTCTGCCTTTTGTCTGAACTTGCATAGCTATTTTGTCAATTG---TCTCAGAAAG----------------------------TGAAGTACTTTTTTCT---TGACTTCATGTGGAAAATGA i micMur3.chr12 I 384 C 0 s mm10.chr13 76445699 97 + 120421639 ATATATATT-TAGTCTGCTATTTGTCTGAACTTTCACGGCTGCTTTGTTGTTTA---TCTTGTAGAA----------------------------TGGAATG-TTCTTT-T---TGTCCTAACTTCAAAAATTA i mm10.chr13 I 6 C 0 s canFam3.chr3 14307683 91 + 91889043 TTGTATTTTATAACCCAGCATCTGTCTGGACTTGCA------TTTTGTAAATTG---CCTCAGAAAA----------------------------T-----A-TTCTTTCTTGATGACCTCATCTAGAAAATGA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1223404 90 - 11655695 TTGTATTTTGTAGTCTGGCTTTTGTTTGGATTTGCAGAGCTGTTTTGTCAGTTT---TCTCAGAAAA----------------------------TTAAGTG-TTTCTCCT------------GTGGAAAAAAA i dasNov3.JH570378 C 0 I 1118 e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e otoGar3.GL873536 1294736 0 - 29863360 C a score=66016.000000 s hg38.chr5_GL383530v1_alt 27651 5 + 101241 CCTCA s panTro5.chr5 20256403 5 + 181907262 CCTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273700 5 + 183735486 CCTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759547 5 - 13748885 CCTCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794699 5 - 163208435 CCTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822857 5 - 180051392 CCTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87927268 5 - 181584905 CCTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1150178 5 - 8785636 CCTCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1618396 5 + 27333823 CCTCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1888503 5 - 91010382 CCTCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1999521 5 + 5179401 CCTCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7705406 5 - 21726897 CCTCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526563 4 + 204313951 -CTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971843 5 + 71252344 CCTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336338 5 - 1393929 CCTCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1413017 5 - 15889662 CCTCA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84824584 5 + 108143057 TATCA i micMur3.chr12 C 0 C 0 s mm10.chr13 76445796 5 + 120421639 CACTA i mm10.chr13 C 0 C 0 s canFam3.chr3 14307774 5 + 91889043 CCTCA i canFam3.chr3 C 0 C 0 e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e dasNov3.JH570378 1223494 1118 - 11655695 I e otoGar3.GL873536 1294736 0 - 29863360 C a score=736880.000000 s hg38.chr5_GL383530v1_alt 27656 61 + 101241 ----AATAA--ATTTTT-TTTTTTGCTTCACCTCTATCTTGATATCAACATAGTTTAAAATGGGACTG s panTro5.chr5 20256408 61 + 181907262 ----AATAA--ATTTTT-GTTTTTGCTTCACCTCTATCTTGATATCAACATAGTTTAAAATGGGACTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273705 61 + 183735486 ----AATAA--ATTTTT-GTTTTTGCTTCACCTCTATCTTGATATCAACGTAGTTTAAAATGGGACTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759552 63 - 13748885 ----AATAATTTTTTTT-TTTTTTGCTTCACTTCTATCTTGATATCAACATAGTTTAAAATGGGACTG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794704 60 - 163208435 ----AATAA--ATTTTT--TCTTTGCTTCGTCTCTATCTTGATATCAACATAGTTTAAAATGGGACTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822862 60 - 180051392 ----AATTA--ATTTTT--TCTTTGCTTCACATCCATCTTGATATCAACATAGTTTAAAATGGGACTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87927273 60 - 181584905 ----AATTA--ATTTTT--TCTTTGCTTCACATCCATCTTGATATCAACATAGTTTAAAATGGGACTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1150183 60 - 8785636 ----AATTA--ATTTTT--TCTTTGCTTCACATCCATCTTGATATCAACATAGTTTAAAATGGGACTG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1618401 60 + 27333823 ----AATTA--ATTTTT--TCTTTGCTTCACATCCATCTTGATATCAACATAGTTTAAAATGGGACTG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1888508 60 - 91010382 ----AATTA--ATTTTT--TCTTTGCTTCACATCCATCTTAATATCAACATAGTTTAAAATGGGACTG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1999526 60 + 5179401 ----AATTA--ATTTTT--TCTTTGCTTCACATCCATCTTGATATCAACATAGTTTAAAATGGGACTG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7705411 60 - 21726897 ----AATTA--ATTTTT--TCTTTGCTTCACATCCATCTTGATATCAACATAGTTTAAAATGGGACTG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526567 60 + 204313951 ----AATTA--ATTTTT--TCATTGCTTTACATCCATCTCGATATCAACTTATTTTACAACGAGACTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971848 60 + 71252344 ----ATTTA--ATTTTT--TCTTTGCTTTACATCCATCTCGGTATCAACTTATTTTAAAATGAGATTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336343 60 - 1393929 ----AATTA--ATTTTT--TCTTTGCTTTACATCCATCTCGATATCAACTTATTTTAAAATGAGATTG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1413022 60 - 15889662 ----AATTA--ATTTTT--TCTTTGCTTTACATCCATCTCGATATCAACTTATTTTAAAATGAGACTG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84824589 59 + 108143057 ----AATTA--ATTTT---TCTTTGTTTCGTATTCCTCTTGATATCAGCATAATTTAAAATGGGACTG i micMur3.chr12 C 0 I 15 s mm10.chr13 76445801 60 + 120421639 ----AATTA--TTTTTT--CTTTTGCTTCAATCTCATATTGATATGAGAATATTTTGAACTGTAACTA i mm10.chr13 C 0 C 0 s canFam3.chr3 14307779 62 + 91889043 ----AATTA--ATTTTTTTTCTTTGCTTCAAATTCATCTTAAAATTAGTAGAGTTTAAAATGAGATTG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1224612 61 - 11655695 AATAAATTA--ATATTT---CTTTACTTCAAATTCACCTCAAAATCAG--TAGTTTATAATGGGACTG i dasNov3.JH570378 I 1118 C 0 e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e otoGar3.GL873536 1294736 0 - 29863360 C a score=1298974.000000 s hg38.chr5_GL383530v1_alt 27717 118 + 101241 TTCTTTTAATGCCA---GTTAGGTTTTGGTGAACATTTGG-ATTTTCTTCCTTTAAAAAGTTGCATTTTTA-CTTAACAGTAAATATTTTCA-A-----------AA--AGA-------------------------GAA---AAATCCCACATCTGTGAACTTA s panTro5.chr5 20256469 118 + 181907262 TTCTTTTAATGCCA---GTTAGATTTTGGTGAACATTTGG-ATTTTCTTCCTTCAAAAAGTTGCATTTTTA-CTTAACAGTAAATATTTTCA-A-----------AA--AGA-------------------------GAA---AAATCCCACATCTGTGAACTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273766 118 + 183735486 TTCTTTTAATGCCA---GTTAGATTTTGGTGAACATTTGG-ATTTTCTTCCTTCAAAAAGTTGCATTTTTA-CTTAACAGTAAATATTTTCA-A-----------AA--AGA-------------------------GAA---AAATCCCACATCTGTGAACTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759615 121 - 13748885 TTCTTTTAATGCCAGTTGTTAGATTTTGGTGAACATTTGG-ATTTTCTTCCTTCAAAAAGTTGCATTTTTA-CTTAACAGTAAATATTTTCA-A-----------AA--AGA-------------------------GAA---AAATCCCACATCTGTGAACTTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794764 121 - 163208435 TTCTTTTAATGCCAGTTGTTAGATTTTGGTGAACATTTGG-ATTTTTTTCCTTCAAAAAGTTGCATTTTTA-CTTAACAGTAAATATTTTCA-A-----------AA--AGA-------------------------GAA---AAATCCCACATCTATGAACTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87822922 120 - 180051392 TTCTTTTAATGCCAGTTATTAGATTTTGGTGAACATTTGG-ATTTT-TTCCTTCAAAAAGTTGCATTTTTA-CTTAACAGTAAATATTTTCA-A-----------AA--AGA-------------------------GAA---AAATCCCAAATCTATGAACTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87927333 120 - 181584905 TTCTTTTAATGCCAGTTATTAGATTTTGGTGAACATTTGG-ATTTT-TTTCTTCAAAAAGTTGCATTTTTA-CTTAACAGTAAATAGTTTCA-A-----------AA--AGA-------------------------GAA---AAATCCCAAATCTATGAACTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1150243 120 - 8785636 TTCTTTTAATGCCAGTTATTAGATTTTGGTGAACATTTGG-ATTTT-TTTCTTCAAAAAGTTGCATTTTTA-CTTAACAGTAAATATTTTCA-A-----------AA--AGA-------------------------GAA---AAATCCCAAATCTATGAACTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1618461 120 + 27333823 TTCTTTTAATGCCAGTTATTAGATTTTGGTGAACATTTGG-ATTTT-TTTCTTCAAAAAGTTGCATTTTTA-CTTAACAGTAAATATTTTCA-A-----------AA--AGA-------------------------GAA---AAATCTCAAATCTATGAACTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1888568 120 - 91010382 TTCTTTTAATGCCAGTTATTAGATTTTGGTGAACATTTGG-ATTTT-TTTCTTCAAAAAGTTGCATTTTTA-CTTAACAGTAAATATTTTCA-A-----------AA--AGA-------------------------GAA---AAATCCCAAATCTATAAACTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1999586 120 + 5179401 TTCTTTTAATGCCAGTTATTAGATTTTGGTGAACATTTGG-ATTTT-TTTCTTCAAAAAGTTGCATTTTTA-CTTAACAGTAAATATTTTCA-A-----------AA--AGA-------------------------GAA---AAATCCCAAATCTATGAACTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7705471 120 - 21726897 TTCTTTTAATGCCAGTTACTAGATTTTGGTGAACATTTGG-ATTTT-TTTCTTCAAAAAGTTGCATTTTTA-CTTAACAGTAAATATTTTCA-A-----------AA--AGA-------------------------GAA---AAATCCCAAATCTATGAACTTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526627 120 + 204313951 TTCTTTTCATGCCAGTTATTAGATTTTGGTGAACATTTGG-ATTTT-TTTCTTCAAAAAGTTGCATTTTTA-CATAACAGTAATTATTATCA-G-----------AA--AGA-------------------------GAA---AAATCCAAAATCTACTAACTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44971908 121 + 71252344 TTCTTTTAATGCCAGTTATTAGATTTTGGTGAACATTTGGAATCTT-TTTCTTCAAAAAGTTGCATTTTTA-CGTAACAGTAATTATTATCA-G-----------AA--AGA-------------------------GAA---AAATCCAAAATCTACAAACTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336403 120 - 1393929 TTCTTTTAATGCCAGTTATTAGATTTTGGTGAACATTTGG-ATTTT-TGTCTTCAAATAGTTGCATTTTTA-CATAACAGTAATTATTATCA-G-----------AA--AGA-------------------------GAA---AAATCCCAAATCTATGAACTCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1413082 120 - 15889662 TTCTTTTAATGCCAGTTATTAGATTTTGGTGAACATTTGG-ATTTT-TTTCTTCAAAAAGTTGCATTTTTA-CATAACAGTAATTGTTATCA-G-----------AA--AGA-------------------------GAA---AAATCCCAAATCTACGAACTTA i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76445861 111 + 120421639 CTATGCAAAAGCATGTTTTTAG------------ATTGGA-ATTTT-GTTCT--GAAAAGGTATGTCTTAATTTTAAAAGTAAACATTTTCACA-----------AA--AGA-------------------------GAAAGGAAACCTCTAATCTATAAAAATT i mm10.chr13 C 0 C 0 s canFam3.chr3 14307841 121 + 91889043 TACTTTAAAAGCAAGTTATTAGATTTTGGTAGATATTTGG-AAATT-TTTTT--GAAAAGTTGCATTTTTTTCTCAACAATAAATATTTTCA-C-----------AAGTAAA-------------------------AAA---AAATCTCAAATTTACAAAATTT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1224673 144 - 11655695 CTATTTAAAGGCAAAGTGTTGGACTTTAGTTGA-ATTTGG-ATTTT-TT------AAAAG-----TTTTTA-CATAAAATTAAATATGTCCC-AATTTACAAGTTAA--AGACCAGACCAAACCAAACAACAACAACCAA---AAAATCCAAAGCTATAAAACTT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84824648 15 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e otoGar3.GL873536 1294736 0 - 29863360 C a score=519322.000000 s hg38.chr5_GL383530v1_alt 27835 37 + 101241 AACAAAATATTCTCATGGAAAATAGAGAAAGGAGCCC s panTro5.chr5 20256587 37 + 181907262 AACAAAATATTCTCATGGAAAATAGAGAAAGGAGCCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273884 37 + 183735486 AACAAAATATTCTCATGGAAAATAGAGAAAGGAGCCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759736 37 - 13748885 AACAAAATCCTCTCATGGAAAATAGAGAAAGGAGCCC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794885 37 - 163208435 AACAAAATCCTCTCATGGGAAATAGAGAAAGGAGCCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87823042 37 - 180051392 AATAAAATCCTCTCATAGAAAATAGAGAAAGGAGCCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87927453 37 - 181584905 AATAAAATCCTCTCATAGAAAATAGAGAAAGGAGCCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1150363 37 - 8785636 AATAAAATCCTCTCATAGAAAATAGAGAAAGGAGCCC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1618581 37 + 27333823 AATAAAATCCTCTCATAGAAAATAGAGAAAGGAGCCC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1888688 37 - 91010382 AATAAAATCCTCTCATAGAAAATAGAGAAAGGAGCCC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1999706 37 + 5179401 AATAAAATCCTCTCATAGAAAATAGAGAAAGGAGCCC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7705591 37 - 21726897 AATAAAATCCTCTCATAGAAAATAGAGAAAGGAGCCC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526747 37 + 204313951 AATAAAATCCTCTCATGGAAAATAAAGAAAGGAGCCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44972029 37 + 71252344 AATAAAATCCTCTCATGGAAAATAGAAAAAGGAGCCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336523 37 - 1393929 AATAAAATCCTCTCATGGAAAATAGAGAAAGCAGCCC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1413202 37 - 15889662 AATAAAATCCTCTCATGGAAAATAGAGAAAGGAGCCC i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84824663 37 + 108143057 AACAAAATCCTCTCATGGAAAATAGAGAAAGGAGCCC i micMur3.chr12 I 15 C 0 s mm10.chr13 76445972 34 + 120421639 AATAAAACCC---CATGGACACTAGACAATAAACCCC i mm10.chr13 C 0 I 1137 s canFam3.chr3 14307962 37 + 91889043 AACAAAACTCTCTCATGGAAAGTAGTGGAGGGAGACC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1224817 33 - 11655695 AACGAAATCCTTTCATAGAAAATA----AAGGCACTC i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e otoGar3.GL873536 1294736 0 - 29863360 C a score=274542.000000 s hg38.chr5_GL383530v1_alt 27872 25 + 101241 TCCATAGTTGGCAAGTT-------------AAAAAAAA s panTro5.chr5 20256624 25 + 181907262 TCCATAGTTGGCAAGTT-------------AAAAAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273921 25 + 183735486 TCCATAGTTGGCAAGTT-------------AAAAAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759773 25 - 13748885 TCCATAGTTGGCAAGTT-------------AAAAAAAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794922 25 - 163208435 TCCATAGTTGGCAAGTT-------------AAAAAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87823079 25 - 180051392 TCCATAGTTGTCAAGTT-------------AAAAATTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87927490 25 - 181584905 TCCATAGTTGTCAAGTT-------------AAAAATTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1150400 25 - 8785636 TCCATAGTTGTCAAGTT-------------AAAAATTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1618618 25 + 27333823 TCCATAGTTGTCAAGTT-------------AAAAATTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1888725 25 - 91010382 TCCATAGTTGTCAAGTT-------------AAAAAATA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1999743 25 + 5179401 TCCATAGTTGTCAAGTT-------------AAAAATTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7705628 25 - 21726897 TCCATAGTTGTCAAGTT-------------AAAAAATA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526784 25 + 204313951 TTCATAGTTGTCAAGTT-------------AAAAAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44972066 25 + 71252344 TTCATCGTTGTCAAGTA-------------AAAAAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336560 25 - 1393929 TTCATAGTTGTCAAGTT-------------AAAAAAAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1413239 25 - 15889662 TTCATAGTTGTCAAGTT-------------AAAAAAAA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84824700 25 + 108143057 ACTATAATTGTCAAGTT-------------AAAAAAAA i micMur3.chr12 C 0 I 322 s canFam3.chr3 14307999 38 + 91889043 TCGATACATGTTGAGTTTTGAGGGTATGGCAAAAGAAA i canFam3.chr3 C 0 I 51 s dasNov3.JH570378 1224850 25 - 11655695 TCAGTAATTGTCAAATT-------------GATAAAAA i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e mm10.chr13 76446006 1137 + 120421639 I e otoGar3.GL873536 1294736 0 - 29863360 C a score=2515455.000000 s hg38.chr5_GL383530v1_alt 27897 256 + 101241 AAA----GGT-GTTCTGAGAGAGCAGTAAATTGTGACAGAGAGCTTAGTTGACTGGGAGAAGAATTACAGAAAGCAT------TGGCAGTG------GATGTGT-GGCCACTT-ACCAAGATTTACTCCGAAAATGAAAAATCCTGCACCTGTCACACAGAGATTCTTCATACTATTTTTGCTCACT----TAGTTTTGCTCATTTAAGTATTCTTTGGTATTGC-TTAGTGGACTAAAATACATGTT---CAAGGCAGAGGGAGGCGAACTC-----AGAAGAGGAG s panTro5.chr5 20256649 258 + 181907262 AAA-A-AGGT-GTTCTGAGAGAGCAGTAAATTGTGAGAGAGAGCTTAGTTGACTGGGAGAAGAATTACAGAAAGCAT------TGGCAGTG------GATGTGT-GGCCACTT-ACCAAGATTTACTCCGAAAATGAAAAATCCTACACCTGTCACACAGAGATTCTTCATACTATTTTTGCTCACT----TAGTTTTGCTCATTTAAGTATTCTTTGGTATTGC-TTAGTGGACTAAAATACATGTT---CAAGGCAGAGGGAGGCGAACTC-----AGAAGAGGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20273946 257 + 183735486 AAA----GGTAGTTCTGAGAGAGCAGTAAATTGTGAGAGAGAGCTTAGTTGACTGGGAGAAGAATTACAGAAAGCAT------TGGCAGTG------GATGTGT-GGCCACTT-ACCAAGATTTACTCCGAAAATGAAAAATCCTGCACCTGTCACACAGAGATTCTTCATACTATTTTTGCTCACT----TAGTTTTGCTCATTTAAGTGTTCTTTGGTATTGC-TTAGTGGACTAAAATACATGTT---CAAGGCAGAGGGAGGCGAACTC-----AGAAGAGGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4759798 259 - 13748885 AAAAA-AGGT-GTTCTGAGAGAGCAGTAAATTGTGAGAGAGAGCTTAGTTGACTGGGAGGAGAATTACAGAAAGCAT------TGGCAGTG------GATGTGT-GGCCACTT-ACCAAGATTTACTCCGAGAATGAAAAATCCTGCACCTGTCACACAGAGATTCTTCATACTATTTTTGCTCACT----TAGTTTTGCTCATTTATATATTCTTTGGTATTGC-TTAGTGGACTAAAATACATGTT---CAAGGCAGAGGGAGGCGAACTC-----AGAAGAGGAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53794947 268 - 163208435 AAA-A-AGGT-GTTCTGAGAGAGCAGTAAATTGTGAGAGAGGGCTTAGTTGACTGGGAGAAGAATTACAGAAAGCATTGGCAGTGGCAGTG------GATGTGT-GGTCACTT-ACCAAGATTTACTCCGAGAATGAAAAATCCTGCAGCTGTCACACAGAGATTCTTCATTCTATTTTTGCTCACTTAAATAGTTTTGCTCATTTAAATATTCTTTGGTATTGC-TTAGTGGACTAAAATACATGTT---CAAGGCAGAGGGAGGTGAACTC-----AGAAGAGGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87823104 262 - 180051392 AAAAA-AGGT-GTTCTGAGAGAGCAGTAAATTGTGAGAGAGGGCTTAGTTGACTGGTAGAGGAATTGCAGAATGCAT------TGGCAGTG------GATGTGC-AGTCACTT-ACCAAGATTGACTCCGAGGATGAAAAATCCTGCACCTGTCACACAGAGATTCTTCATACTGTTTTTGCTCACTTCAATAGTTTTGCTC------ATATTCTCTGGTATTGC-TTAGTGGATTAGAATACATGTT---CAAGGCACAGGGAGGTGAACTCAAAAGAGAAGAGGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87927515 268 - 181584905 AAAAA-AGGT-GTTCTGAGAGAGCAGTAAATTGTGAGAGAGGGCTTAGTTGACTGGTAGAGGAATTGCAGAATGCAT------TGGCAGTG------GATGTGC-AGTCACTT-ACCAAGATTGACTCCGAGGATGAAAAATCCTGCACCTGTCACACAGAGATTCTTCATACTGTTTTTGCTCACTTAAATAGTTTTGCTCATTTAAATATTCTCTGGTATTGC-TTAGTGGACTAGAATACATGTT---CAAGGCACAGGGAGGTGAACTCAAAAGAGAAGAGGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1150425 268 - 8785636 AAAAA-AGGT-GTTCTGAGAGAGCAGTAAATTGTGAGAGAGGGCTTAGTTGACTGGTAGAGGAATTGCAGAATGCAT------TGGCAGTG------GATGTGC-AGTCACTT-ACCAAGATTGACTCCGAGGATGAAAAATCCTGCACCTGTCACACAGAGATTCTTCATACTGTTTTTGCTCACTTAAATAGTTTTGCTCATTTAAATATTCTCTGGTATTGC-TTAGTGGACTAGAATACATGTT---CAAGGCACAGGGAGGTGAACTCAAAAGAGAAGAGGAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1618643 263 + 27333823 AAAAA-AGGT-GTTCTGAGAGAGTAGTAAATTGTGAGAGAGGGCTTAGTTGACTGGTAGAGGAATTGCAGAAAGCAA------TGGCAGTG------GATGTGT-GGTCACTT-ACCAAGATTGACTCCGAGGACGAAAAATCCTGCACCTGTCACACAGAGATTCTTCATACTGTTTTTGCTCACTTAAATAGTTTTGCTCATTTAAATATTCTCTGATATTGC-TTAGTGGACTAGAATACATGTT---CAAGGCACAGGGAGGTGAACTC-----AGAAGAGGAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1888750 268 - 91010382 AAAAA-AGGT-GTTCTGAGAGAGCAGTAAATTGTGAGAGAGGGCTTAGTTAACTGGTAGAGGAATTGCAGAAAGCAT------TGGCAGTG------GATGTAC-GGTCACTT-ACCAAGATTGACTCTGAGGATGAAAAATCCTGCACCTGTCGCACAGAGATTCTTCATACTATTTTTGCTCACTTAAATAGTTTTGCTCATTTAAATATTCTCTGGTATTGC-TTAGTGGACTAGAATACATGTT---CAAGGCACAGGGAGGTGAACTCAAAAGAGAAGAGGAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 1999768 263 + 5179401 AAAAA-AGGT-GTTCTGAGAGAGCAGTAAATTGTGAGAGAGGGCTTAGTTGACTGGTAGAGGAATTGCAGAAAGCAT------TGGCAGTG------GATGTGT-GGTCACTT-ACCAAGATTGACTCCGAGGATGAAAAATCCTGCACCTGTCACACAGAGATTCTTCATACTGTTTTTGCTCACTTAAATAGTTTTGCTCATTTAAATATTCTCTGGTATTGC-TTAATGGACTAGAATACATGTT---CAAGGCACAGGGAGGTGAACTC-----AGAAGAGGAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7705653 268 - 21726897 AAAAA-TGGT-GTTCTGAGAGAGCAGTAAATTGTGAGAGAGGGCTTAGTTGACTGGCAGAGGAATTGCAGAAAGCAT------TGGCAGTG------GATGTGC-GGCCACTT-ACCAAGATTGACTCCGAGGATGAAAAATCCTGCACCTGTCACACAGAGATTCTTCATACTATTTTTGCTCACTTAAATAGTTTTGCTCATTTAAATATTCTCTGGTATTGT-TTAGTGGACTAGAATACATGTT---CAAGGCACAGGGAGGTGAACTCAAAAGAGAAGAGGAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112526809 237 + 204313951 AAAAA--GGT-GTCTGGAGAGAGCAGTAAATTGTGAGAGAGGGCTTAGTTAACTGGA-----------AGAAAGCAT------TGAGAGTA------GATCTGC-AGTCACTTAACTAGGATTGAC---------------TCCTGCACCCATTGCACAGAGATTCCTCTTACTATTTCTGCTCACTTAAATAGTTTTGCTCATTTAAATATTCTTTGGTATTGC-TTAGTGGATGAGAATACATGTT---CAAGCCAGAGGGAAACGAACTC-----AAAAGAGAAG i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 44972091 253 + 71252344 AAAAA-GGGT-GTCCTGAGAGAGCAGTAAATTGTGAGAGAGGGCTTAGTTAACTGGG-----------AGAAAGCAT------TGAGAGTA------GATCTAC-AGTCACTTAACCAAGACTGACTCTGAGAATGAAAAATCCTGCACCCATTGCACAGAGATTCCTCATACTATTTTTGCTCACTTAAATAGTTTTGCTCATTTAAATATTCTTTGGTATTGC-TTAGTGGACTAGAATACATGTT---CAAGCCAGAGGGAAATGAACTC-----AAAAGAGAAG i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107830v1 336585 254 - 1393929 AAAAAAAGGT-GTCCTGAGAGAGCAGTAAATTGTGAGAGAGGGCTTAGTTAACTGGG-----------AGAGAGCAT------TGAGAGTA------GATCTGC-AGTCACTTAACCAAGATTTACTCTGAGAATGAAAAATCCTGCACCCATCGCACAGAGATTCCTCATGCTATTTTTGCTCACTTAAATAGTTTTGCTCATTTAAATATTCTTTGGTATTAT-TTAGTGGAATAGAATACATGTT---CAAGCCAGAGGGAAATGAACTA-----AAAAGAGAAG i cebCap1.NW_016107830v1 C 0 I 31 s aotNan1.NW_018506370v1 1413264 249 - 15889662 AAAAG---GT-GTCCTGAGGGAGCAGTAAATTGTGAGAGAGGGCTTAGTTAACTGGG-----------AGAAAGCAT------TGAGAGTA------GATCTGC-AGTCACTTAACCAAGATTTACTCTGAGAATGAAAAATCCTGCACCCATCGCAC--AGATTCCTCATACTATTTTTGCTCACTTAAATAGTTTTGCTCATTTAAATATTCTTTGGTATTGC-TTAGTGGACTAGAATACATGTC---CAAGCCAGAGGGAAATGAACTC-----TAAAGAGAAG i aotNan1.NW_018506370v1 C 0 I 5 s canFam3.chr3 14308088 244 + 91889043 AAAAA-AAAA-GTTTTGAGGGTGTGACAAATGGTAAGGGAGGGATTAGTTAAC----GGAATAACTATGGAAGGTAT------TTATTATG------GACATATGGGCCACTG-ACTGAAATCCACTCCAAGCAAGAAAAGGCCTGCATATGTCACACAGAAATTC-TCAAGCTTTTTGTGCTTATTTGA-CAGCCT------GCAGAATATTTGTTGGTGTTGCTTTGGTGGACTGGAATATTTGTTTAATAAGGCAGGAGGTGGTAAAG----------------- i canFam3.chr3 I 51 C 0 s dasNov3.JH570378 1224875 254 - 11655695 ---GA-AGCA-TTTTTGAGGGAGAATTAAATTGTAGGAGGGAAAATAGGTAAGAGGGAGAATAATCACAGAAAGCAT------TTACTGTGGAAACTGAAATAC-ACACCCCTAGCCAAAATACACTCCAAGAAAGAAGA-----------GTCACACAGAGATTCTCCATGTTATTTTAGCTAATTTGGAAGGGCCAGCT------AGTATTCTTTGGCATTGTTTTGGTGAACTGAAATGTTTGTT---CAAGGTA--GGGATGCAAACTCAAAGGGATAGGGGAG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84824725 322 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e mm10.chr13 76446006 1137 + 120421639 I e otoGar3.GL873536 1294736 0 - 29863360 C a score=212002.000000 s hg38.chr5_GL383530v1_alt 28153 31 + 101241 GTTCTCTTTCAATTAAATAATT-AAAAAAATT s panTro5.chr5 20256907 31 + 181907262 GTTCTCTTTCAATTAAATAATT-AAAAAAATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20274203 31 + 183735486 GTTCTCTTTCAATTAAATAATT-AAAAAAATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760057 31 - 13748885 GTTCTCTTTCAATTAAATAATT-TAAAAAATT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53795215 31 - 163208435 GTTCTCTTTCAATTAAATACTT-TAAAAAATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87823366 30 - 180051392 GTTCTCTTTCAATTAAATAATT--AAAAAATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87927783 30 - 181584905 GTTCTCTTTCAATTAAATAATT--AAAAAATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1150693 30 - 8785636 GTTCTCTTTCAATTAAATAATT--AAAAAATT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1618906 30 + 27333823 GTTCTCTTTCAATTAAATAACT--AAAAAATT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889018 30 - 91010382 GTTCTCTTTCAATTAAATAATT--AAAAAATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000031 30 + 5179401 GTTCTCTTTCAATTAAATAATT--AAAAAATT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7705921 30 - 21726897 GTTCTCTTTCAAATAAATAATT--AAAAAATT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527047 30 + 204313951 GGAGACTCTCAGTTAAATACTT-TAAAAAAT- i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 44972345 30 + 71252344 GGAGACTCTCAGTTAAATACTT-TAAAAAAT- i saiBol1.JH378106 I 1 C 0 s aotNan1.NW_018506370v1 1413518 26 - 15889662 ----ACTCTCAGTTAAATACTT-TAAAAAAT- i aotNan1.NW_018506370v1 I 5 C 0 s canFam3.chr3 14308332 31 + 91889043 GTTCTCTTCCAATTAAATAACTATAAAAAAT- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1225129 20 - 11655695 GTTCTTTTTCAA--AACAAGTT---------- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84824725 322 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e mm10.chr13 76446006 1137 + 120421639 I e otoGar3.GL873536 1294736 0 - 29863360 C e cebCap1.NW_016107830v1 336839 31 - 1393929 I a score=514407.000000 s hg38.chr5_GL383530v1_alt 28184 55 + 101241 AACGTAGCCACAATACTCTATTTAAATATATACAACATGCTTTCCCCCAAAAAAC s panTro5.chr5 20256938 55 + 181907262 AACGTAGCCACAATACTCTATTTAAATATATACAACATGCTTTCCCCCAAAAAAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20274234 55 + 183735486 AACGTAGCCACAATACTCTATTTAAATATATACAACATGCTTTCCCCCAAAAAAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760088 55 - 13748885 AATGTAGCCACAATACTCTATCTAAATATATACAACATGTTTTCCCCCCAAAAAC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53795246 55 - 163208435 AACGTAGCTACAATATTCTATTTAAATATATACAACATGCTTTCCCCCAAAAAAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87823396 55 - 180051392 GGCATAGCTATGGTACTCTATTTAAATATATACAACATGCTTTCCCCAAAAGAAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87927813 55 - 181584905 GGCATAGCTATGGTACTCTATTTAAATATATACAACATGCTTTCCCCAAAAGAAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1150723 55 - 8785636 GGCATAGCTATGGTACTCTATTTAAATATATACAACATGCTTTCCCCAAAAGAAC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1618936 55 + 27333823 GGCATAGCTATGGTACTCTATTTAAATATATACAACATGCTTTCCCCAAAAGAAC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889048 55 - 91010382 GGCATAGCTATGATACTCTATTTAAATATATACAACATGCTTTCCCCAAAAGAAC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000061 55 + 5179401 GGCATAGCTATGGTACTCTATTTAAATATATACAACATGCTTTCCCCAAAAGAAC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7705951 55 - 21726897 GGCATAGCTATGGTACTCTATTTAAATATATACAACGTGCTTTCCCCAAAAGAAC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527077 55 + 204313951 AACACAGCTATGATGCTCTATTTAAATATATACAACATGCTTTACCCTGAAAACC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44972375 55 + 71252344 AACATGGCTATGATGCTCTATTTAAATATATACAACATGCTTTCCCCTGAAAATC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336870 55 - 1393929 AATGTGGCTATGATGCTCTATTTAAATATATACAACATGCTTTCCCCTGAAAACC i cebCap1.NW_016107830v1 I 31 C 0 s aotNan1.NW_018506370v1 1413544 55 - 15889662 AACATGGCTATTATGCTCTATTTAAATATATACAACATGCTTTCCCCTGAAAACC i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14308363 55 + 91889043 GATATAGCAGTGATACTCTACTCAAATATATAGAACATACTTTCCTAAAGGCAAA i canFam3.chr3 C 0 I 4 s dasNov3.JH570378 1225149 12 - 11655695 -------------------ACTCAAAAAAAT------------------------ i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84824725 322 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e mm10.chr13 76446006 1137 + 120421639 I e otoGar3.GL873536 1294736 0 - 29863360 C a score=867490.000000 s hg38.chr5_GL383530v1_alt 28239 71 + 101241 AAGAACAA--ACACATTA--ACAATAAATAT-CCTTGGGTCCAGATTATGGCGAGGTCAGAGAGGTGGGGTAAAGA s panTro5.chr5 20256993 71 + 181907262 AAGAACAA--ACACGTTA--ACAATAAATAT-CCTTGGGTCCAGATTATGGCCAGGTCAGAGAGGTGGGGTAAAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20274289 71 + 183735486 AAGAACAA--ACACGTTA--ACAATAAATAT-CCTTGGGTCCAGATTATGGCCAGGTCAGAGAGGTGGGGTAAAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760143 71 - 13748885 AAGAACAA--ACACGTTA--ACAATAAACAT-CTTTGGGTCCAGATTATGGCCAGGTCAGAGAGGTGGGGTAAAGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53795301 71 - 163208435 AAGAACAA--ACATGTTA--ACAATAAACAT-CCTTGGGTCCAGATTATGGCCAGGTCAGAGAGGTGGGGTAAAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87823451 71 - 180051392 AAGAACAA--ACACATTA--ACAGTTAACAT-CCTTGGGCCCAGATTATGGCCAGATTAGAGAGGTGGGGTAAAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87927868 71 - 181584905 AAGAACAA--ACACATTA--ACAGTTAACAT-CCTTGGGCCCAGATTATGGCCAGATTAGAGAGGTGGGGTAAAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1150778 71 - 8785636 AAGAACAA--ACACATTA--ACAGTTAACAT-CCTTGGGCCCAGATTATGGCCAGATTAGAGAGGTGGGGTAAAGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1618991 71 + 27333823 AAGAACAA--ACACATTA--ACAGTTAACAT-CCTTGGGCCCAGATTATGGCCAGATTAGAGAGGTGGGGTAAAGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889103 71 - 91010382 AAGAACAA--ACACATTA--ACAGTAAACAT-CCTTGGGCCCAGATTATGGCCAGATTAGAGAGGAGGGGTAAAGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000116 71 + 5179401 CAGAACAA--ACACATTA--ACAGTTAACAT-CCTTGGGCCCAGATTATGGCCAGATTAGAGAGGTGGGGTAAAGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7706006 63 - 21726897 AAGAACAA--ACACATT----------ACAT-CCTTGGGCCCAGATTATGACCAGATCAGAGAGGTGGGGTAAAGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527132 71 + 204313951 AAGAACAA--ACACATTA--ACAGTAAACAT-CTTTGGGTCCAGATTATGGCCAGGTTAGAGAGGTGGGGTAGAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44972430 71 + 71252344 AAGAACAA--ACACATTA--ACAGTAAACAT-CTTTGGGTCCAGATTATGGCCAGGTCAGAGAGGTGGGGTAAAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336925 73 - 1393929 AAGAACAAACACACATTA--ACAGTAAACAT-CTTTGGGACCAGATTATGGCCAGGTCAGAGAGGTGGGGTAAAGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1413599 71 - 15889662 AAGAACAA--ACACATTA--ACAGTAAACAT-CTTTGGGTCCAGATTATGGCCAGGTCAGAGAGATGGGGTAAAGA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84825047 72 + 108143057 AAGAACAA--ACACATTG--ACAATAAATATGACCTAGGTCTAGATTATGGCCAGGTGAGAGAGGTGGGGAAAAGA i micMur3.chr12 I 322 C 0 s canFam3.chr3 14308422 72 + 91889043 AAGAGCAA--ACATATTA--ATAATAAATATGTCTCAGGTCCAGGGGATGACCCAGTAACAGTGGTAGAGAAAAGA i canFam3.chr3 I 4 C 0 s dasNov3.JH570378 1225161 74 - 11655695 AAAAGTAA--AAAAGGTATGGTGATACATATGCCTCAGGTCCAGATTATGGCCAGGTAAGAGAGATGGGGAAAAGA i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e mm10.chr13 76446006 1137 + 120421639 I e otoGar3.GL873536 1294736 0 - 29863360 C a score=64186.000000 s hg38.chr5_GL383530v1_alt 28310 8 + 101241 GGGAGGGA- s panTro5.chr5 20257064 8 + 181907262 GGGAGGGA- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20274360 8 + 183735486 GGGAGGGA- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760214 8 - 13748885 GGGAGGGA- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53795372 8 - 163208435 GGGAGGGA- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87823522 8 - 180051392 AGGAGTGA- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87927939 8 - 181584905 AGGAGTGA- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1150849 8 - 8785636 AGGAGTGA- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1619062 8 + 27333823 AGGAGTGA- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889174 7 - 91010382 AGG-GTGA- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000187 8 + 5179401 AGGAGTGA- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7706069 8 - 21726897 AGGAGTGA- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527203 8 + 204313951 GGAAGGGA- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44972501 8 + 71252344 GGAAGGGA- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 336998 8 - 1393929 GGAAGGGA- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1413670 8 - 15889662 AGAAGGGA- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84825119 8 + 108143057 AGGAGGGA- i micMur3.chr12 C 0 I 150 s canFam3.chr3 14308494 9 + 91889043 GGGAAGGGA i canFam3.chr3 C 0 C 0 e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e dasNov3.JH570378 1225235 0 - 11655695 C e mm10.chr13 76446006 1137 + 120421639 I e otoGar3.GL873536 1294736 0 - 29863360 C a score=39417.000000 s hg38.chr5_GL383530v1_alt 28318 4 + 101241 Aaat s panTro5.chr5 20257072 4 + 181907262 Aaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20274368 4 + 183735486 Aaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760222 4 - 13748885 Aaat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53795380 4 - 163208435 Aaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87823530 4 - 180051392 Gaat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87927947 4 - 181584905 Gaat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1150857 4 - 8785636 Gaat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1619070 4 + 27333823 Gaat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889181 4 - 91010382 Gaat i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000195 4 + 5179401 Gaat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7706077 4 - 21726897 Aaat i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527211 4 + 204313951 Gaat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44972509 4 + 71252344 Gaat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 337006 4 - 1393929 Gaat i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1413678 4 - 15889662 Gaat i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14308503 4 + 91889043 AGAT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84825127 150 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e dasNov3.JH570378 1225235 0 - 11655695 C e mm10.chr13 76446006 1137 + 120421639 I e otoGar3.GL873536 1294736 0 - 29863360 C a score=2998679.000000 s hg38.chr5_GL383530v1_alt 28322 346 + 101241 ggactttggggacttgggaggaaatggt-gggaagggggtgagggataataaaaggctacaaattgggttcagt------------ggtgatgggtgcaccaaaatctcacaagtcaccgcgaaaga----acttatgtaaccaaataccacttgttcccccaacacctgtggaaatt--taaaaaa-TAAAATTAGAGATGATATACTTTCATCCATCTCTTAGGGAATAGGGTCACAAAACAGGTCATGCATCAG-AAAAAAATTAAGAGCAAATTATCTAAT--GATTCTGGAATCTCTCTCCCCTCATTTTAATGAAATACATATTTACATTAAAATA---TCTTCTAAAG-TC------------AAA--CAAAAGGGAGGG s panTro5.chr5 20257076 346 + 181907262 ggactttggggacttgggaggaaatggt-gggaagggggtgagggataataaaaggctacaaattgggttcagt------------ggtgatgggtgcaccaaaatctcacaagtcaccgcgaaaga----acttatgtaaccaaataccacttgttcccccaacacctgtggaaatt--taaaaaa-TAAAATTAGAGATGATATACTTTCATCCATCTCTTAGGGAATAGGGTCACAAAACGGGTCATGCATCAG-AAAAAAATTAAGAGCAAATTATCTAAT--GATTCTGGAATCTCTCTCCCCTCATTTTAATGAAATACATATTTACATTAAAATA---TCTTCTAAAG-TC------------AAA--CAAAAGGGAGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20274372 347 + 183735486 ggactttggggacttgggaggaaatggt-gggaagggggtgagggataataaaaggctacaaattgggttcagt------------ggtgatgggtgcaccaaaatctcacaagtcaccgcgaaaga----acttatgtaaccaaataccacttgttcccccaacacctgtggaaatt--taaaaaa-TAAAATTAGAGATGATATACTTTCATCCATCTCTTAGGGAATAGGGTCACAAAACAGGTCATGCATCAG--AAAAAATTAAGAGCAAATTATCTAATTAGATTCTGGAATCTCTCTCCCCTCATTTTAATGAAATACATATTTACATTAAAATA---TCTTCTAAAG-TC------------AAA--CAAAAGGGAGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760226 346 - 13748885 ggactttggggacttgggaggaaatggt-gggaagggggtgagggataataaaaggctacaaattgggttcagt------------ggtgatgggtgcatcaaaatctcacaagtcaccgcgaaaga----acttatgtaaccaaataccacttgttcccccaacacctgtggaaatt--taaaaaa-TAAAATTAGAGATGATATACTTTCATCCATCTCTTAGGGAATAGGGTCACAAAACAGGTCATGCATCAG-AAAAAAATTAAGAGCAAATTATCTAAT--GATTCTGGAATCTCTCTCCCCTCATTTTAATGAAATACATATTTACATTAAAATA---TCTTCTAAAG-TC------------AAA--CAAAagggaggg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53795384 353 - 163208435 ggactttggggacttgggaggaaatggt-gggaagggggtgagggataataaaaggctacaaattgggttcagt------------ggtgatgggtgcaccaaaatctcacaagtcaccattaaaaaacttacttatgtaaccaaataccacttgttcccccaacacctatggaaatt--taaaaaaGTAAAATTAGAGATGATATGCTTTCATCCATCTCTTAGGGAATAGGGTCACAAAACAGGTCATGCATCAG-AAAAAAATTAAGAGCAAATCATCTAAT--GATTCTGGAATCTCTCTCCCCACATTTTAATGAAATACATACTTACATTAAAATC---TCTTTTAAAG-TC----------AAAAA--AAAAAGGGAGGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87823534 363 - 180051392 ggactttgggg-----------aagggt-gggaagggggtgagggataataaaaggctacaaattgggttcagtgtatactgctcgggtgatgggcacaccaaaatctcacaagtcaccactgaagaacttacttatgtaaccaaatacgacttattcccccaaaacctatggaaatt--aaaaaaAATAAAATTAGAGATGATATGCTTTCATCCATCTCTTAGGGAATAGGGTCACAAAA-AACTCATGCATCAG-AAAAAATTTAAGAGCAAATTATCTAAT--GATTTTGGGATCTCTCTCTCCTCATTTTAATGGAATACATATTTACATTAAAATTAAAATTTTTAAAG-TC---AAAAAAAAAAAA--AGAAAGAAAGGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87927951 360 - 181584905 ggactttgggg-----------aagggt-gggaagggggtgagggataataaaaggctacaaattgggttcagtgtatactgctcgggtgatgggcacaccaaaatctcacaagtcaccactgaagaacttatttatgtaaccaaatacgacttattcccccaaaacctatggaaatt--aaaaaaAATAAAATTAGAGATGATATGCTTTCATCCATCTCTTAGGGAATAGGGTCACAAAA-AACTCATGCATCAG-AAAAAATTTAAGAGCAAATTATCTAAT--GATTTTGGGATCTCTCTCTCCTCATTTTAATGGAATACATATTTACATTAAAATC---TCTTTTAAAG-TC---AAAAAAAAAAAA--AGAAAGAAAGGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1150861 360 - 8785636 ggactttgggg-----------aagggt-gggaagggggtgagggataataaaaggctacaaattgggttcagtgtatactgctcgggtgatgggcacaccaaaatctcacaagtcaccactgaagaacttacttatgtaaccaaatacgacttattcccccaaaacctatggaaatt--aaaaaaAATAAAATTAGAGATGATATGCTTTCATCCATCTCTTAGGGAATAGGGTCACAAAA-AACTCATGCATCAG-AAAAAATGTAAGAGCAAATTATCTAAT--GATTTTGGGATCTCTCTCTCCTCATTTTAATGGAATACATATTTACATTAAAATC---TCTTTTAAAG-TC---AAAAAAAAAAAA--AGAAAGAAAGGT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1619074 364 + 27333823 ggactttgggg-----------aagggt-gggaaggggatgagggataataaaaagctacaaattgggttcagtgtatactgctcgggtgatgggcacaccaaaatctcacaagtcaccactaaagaacttacttatgtaaccaaacacaacttattcccccaaaacctatggaaatt-aaaaaaAAATAAAATTAGAGATGATATGCTTTCATCCATCTCTTAGGGAATAGGGTCACAAAA-AACTCATGCATCAG-AAAAAATTTAAGAGCAAATTATCTAAT--GATTCTGGGATCTCTCTCTCCTCATTTTAATGGAATACATATTTACATTAAAATC---TCTTTTAAAG-TCaaaaaaaaaaaaaaa--agaaagaaaGGG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889185 360 - 91010382 ggactttgggg-----------aagggt-gggaagggggtgcgggataataaaaggctacaaattgggttcagtgtatattgctcaggtgatgggcacaccaaaatctcacaagtcaccactgaagaacttacttatgtaaccaaatacgacttgttcccccaaaacctatggaaattaaaaaaAAAATAAAATTAGAGATGATATGCTTTCATCCATCTCTTAGGGAATAGGGTCACAAAA-AACTCATGCATCAG-AAAAAAATTAAGAGCAAATTATCTAAT--GATTCTGAGATCTCTCTCTCCTCATTTTAATGGAATACATATTTACATTAAAATC---TCTTTTAAAG-TC---aaaaaaaaaaaa----aaagaaaGGG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000199 361 + 5179401 ggactttgagg-----------aagggt-gggaagggggtg-aggataataaaaggctacaaattgggttcagtgtatactgctcgggtgatgggcacaccaaaatctcacaagtcaccactgaagaacttacttatgtaaccaaatacgacttattcccccaaaacctatggaaatt--aaaaaaAATAAAATTAGAGATGATATACTTTCATCCATCTCTTAGGGAATAGGGTCACAAAA-AACTCATGCATCAG-AAAAAATTTAACAGCAAATTATCTAAT--GATTCTGGGATCTCTCTCTCCTCATTTTAATGGAATACATATTTACATTAAAATC---TCTTTTAAAG-TC---aaaaaaaaaaaaaaagaaagaaaGGG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7706081 360 - 21726897 ggactttgggg-----------aagggt-gggaagcgggtaagggataataaaaggctacaaattgggttcagtgtatactgcttgggtgatgggcataccaaaatctcacaagtcaccactgaagaacttacttatgtaaccaaatacaacttgttcccccaaaacctatggaaatt--aaaaaaAATAAAATTAGAGATGATATGCTTTCATCCATCTCTTAGGGAATAGGGTCACAAAA-AACTCATGCATCAG-AAAAAAATTAAGAGTAAATTATCTAAT--GATTCTGGGATCTCTGTCTCCTCATTTTAATGGAATACATATTTACATTAAAATC---TCTTTTAAAG-TC---AAAAAAAAAAAA--AGGAGGGGAGGG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527215 363 + 204313951 ggactttgaggac--gaggggaaggggt-ggaaaggggatgaggg---ataaa-ggctacaaattgggatcagtatatactgcttgggtaatgggggtaccaaaatctcacaggtcaccactaaagaacttacttatgtaaccacacacgacttgtttccccaaaacctatgaaaatcgaaagaaaAATACAATTAGAGATTATATGCTTTCATCCATCTCTTAGGGAATAGGGTCACAAAACAGGTCTTGTTTCAG-AAAAAAATTAAGAGCACATGATCTAAT--GATTCTGGAATCTCTCTCCTCTCATTTTAATGAAATACATATTTACATTAAAATC---TTTTTTAAAG-TA--------aaaaaaa--aaaaaaggaggg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44972513 358 + 71252344 ggactttgaggacttggggggaaggggtgggaaagggaatgaggg---ataaagggctacaaattaggatcagtatatactgcttgggtaatgggggtcccaaaatctcgcaagtcaccactaaagaacatacttatgtaaccacacaccacttgttcctccaaaacctatgaaaattgaaagaaaAATACCATTAGAGATTATATGCTTTCATCCGTCTCTTAGAGAATAGGGTCACAAAACTGGTCTTGTTTCAGAAAAAAAATTAAGAGTGCATGATCTAAT--GATTCTGGAA----TCTCCTCTCATTTTAATGAAATACATATTTACATTAAAATC---TTTT-------TA--------AAGTCAA--AAagagggaggg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 337010 365 - 1393929 ggactttgaggacttggggggaagggat-ggaaaggggatgaggg---ataaagggctacaaattgggatcagtatatactgcttgggtaatgggaataccaaaatatcacaagtcaccactaaagaacttacttatgtaaccaca-accacttgttaccccaaaacctatgaaaattgaaagaaaAATACAATTAGAGATTATATGCTTTCATCCATCTCTTAGGGAATAGGGTCACAAAACAGATCTTCTTTCAG-AAAAAAATTAAAAGTACATGATCTAAT--GATTCTGGAATCTCTCTCCTCTCATTTTAATGAAATACATATTTACATTAAAATC---TTTTTTAATG-TC--------AAAAAAA--AAAgagggaggg i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1413682 367 - 15889662 ggactttgaggacttgaggggaaggggt-ggaaaggggatgaggg---ataaagggctacaaattgggatcagtatatactgcttgggtaatgggggtaccaaaatctcacaagtcaccactaaagaacttacttatgtaaccacacaccacttgttcccccaaaacctatgaaaattgaaagaaaAATACAATTAGAGATTATATGCTTTCAACCATCTCTTAGGGAATAGGGTCACAAAACAGGTCTTGTTTCAG-AAAAATATTAAGAGCACATGATCTAAT--GATTCTGGAATCTCTCTCCTCTCATTTTAATGAAATACATATTTATATTAAAATC---TTTTTTAAAGTCA--------AAAAAAA--AAAgagggaggg i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14308507 0 + 91889043 C e micMur3.chr12 84825127 150 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e dasNov3.JH570378 1225235 0 - 11655695 C e mm10.chr13 76446006 1137 + 120421639 I e otoGar3.GL873536 1294736 0 - 29863360 C a score=295659.000000 s hg38.chr5_GL383530v1_alt 28668 31 + 101241 AGGAAGGGAGATGGAGAGAAGAGGGTATGGG s panTro5.chr5 20257422 31 + 181907262 AGGAAGGGAGATGGAGAGAAGAGGGTATGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20274719 31 + 183735486 AGGAAGAGAGATGGAGAGAAGAGGGTATGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760572 30 - 13748885 aggaagggagatggagagaagagggtat-gg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53795737 31 - 163208435 AGGAAGGGAGATGGAGAGAAGAAGGTGTGGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87823897 31 - 180051392 ATGAAGGGAGATGGAGAGAAGAGGGTATGGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87928311 31 - 181584905 ATGAAGGGAGATGGAGAGAAGAGGGTATGGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1151221 31 - 8785636 ATGAAGGGAGATGGAGAGAAGAGGGTATGGG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1619438 31 + 27333823 ATGAAGGGAGATGGAGAGAAGAGGGTATGGG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889545 31 - 91010382 ATGAAGGGAGATGGAGAGAAGAGGGTATGGG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000560 31 + 5179401 ATGAAGGGAGATGGAGAGAAGAGGGTATGGG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7706441 31 - 21726897 AGGAAGGGAGATGGAGAGAAGAGCGTATGGG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527578 30 + 204313951 aagaagggaggtggagagaagagggtac-ag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44972871 30 + 71252344 aagaagggaggtggagagaagagggtac-ag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 337375 30 - 1393929 agtaagggaggtggagagaagagggtac-ag i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1414049 30 - 15889662 aggaagggaggtggagagaagagggtac-ag i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1225235 31 - 11655695 AAGAAAGAGAATGGGGGCTAGAGGATGGGGG i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14308507 0 + 91889043 C e micMur3.chr12 84825127 150 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e mm10.chr13 76446006 1137 + 120421639 I e otoGar3.GL873536 1294736 0 - 29863360 C a score=69223.000000 s hg38.chr5_GL383530v1_alt 28699 13 + 101241 GACAGACTAGG--TG- s panTro5.chr5 20257453 13 + 181907262 GACAGACTAGG--TG- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20274750 13 + 183735486 GACAGACTAGG--TG- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760602 13 - 13748885 gacagactagg--tg- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53795768 13 - 163208435 GACAGACTATG--TG- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87823928 12 - 180051392 GACAGACTGGG---G- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87928342 12 - 181584905 GACAGACTGGG---G- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1151252 12 - 8785636 GACAGACTGGG---G- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1619469 12 + 27333823 GACAGACTGGG---G- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889576 12 - 91010382 GACAGACTAGG---G- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000591 12 + 5179401 GACAGACTGGG---G- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7706472 12 - 21726897 GACAGACTGGG---G- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527608 13 + 204313951 gacagacgaaa--gg- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44972901 13 + 71252344 gacagatgaaa--gg- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 337405 10 - 1393929 gatagac---a--gg- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1414079 13 - 15889662 gacagacgaaa--gg- i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76447143 15 + 120421639 GACAGATCAGAGAGG- i mm10.chr13 I 1137 C 0 s dasNov3.JH570378 1225266 13 - 11655695 GACTGATTAGG---GA i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14308507 0 + 91889043 C e micMur3.chr12 84825127 150 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e otoGar3.GL873536 1294736 0 - 29863360 C a score=985219.000000 s hg38.chr5_GL383530v1_alt 28712 107 + 101241 GGAGGGAA-------TGGAGAGGGAAATGTCCTTAGACACAAAGG--------------AAAACCC--AGAACG-GAGCAAGA-AGAT-GTAAAGGAGAGAG-------------ATGAAACCCTGAGGAAAGACGGGAAGGCAGC s panTro5.chr5 20257466 107 + 181907262 GGAGGGAA-------TGGAGAGGGGAATGTCCTTAGACACAAAGG--------------AAAACCC--AGAACG-GAGCAAGA-AGAT-GTAAAGGAGAGAG-------------ATGAAACCCTGAGGAAAGACGGGAAGGCAGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20274763 107 + 183735486 GGAGGGAA-------TGGAGAGGGGAATGTCCTTAGACACAAAGG--------------AAAACCC--AGAACG-GAGCAAGA-AGAT-GTAAAGGAGAGAG-------------ATGAAACCCTGAGGAAAGATGGGAAGGCAGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760615 107 - 13748885 ggagggaa-------tggagaggggaATGTCCTTAGACACAAAAG--------------AAAACCC--AGAACG-GAGCAAGA-AGAT-GTAAAGGAGAGAG-------------ATGAAACCCTGAAGAAAGACGGGAAGGCAGC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53795781 107 - 163208435 GGAGGGAA-------TGGAGAGGGGAATGCCCTTAGACACAAAGG--------------AAAACCT--GGAACA-GAGCAAGA-AGAT-GTAAAGGAGAGAG-------------ATGAAACCCTGAGGAAAGACGGGAAGGCAGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87823940 107 - 180051392 GGAGGAAA-------TGAAGAGGAGAATGCCCTTAGACACAAAGG--------------AAAACCC--AGAACG-GAGCAAAA-AGAT-GTAAAGGGGAGAG-------------ATGAAACCCTGAGGAAAGATGGGAAGGCAGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87928354 107 - 181584905 GGAGGAAA-------TGAAGAGGAGAATGCCCTTAGACACAAAGG--------------AAAACCC--AGAACG-GAGCAAAA-AGAT-GTAAAGGGGAGAG-------------ATGAAACCCTGAGGAAAGATGGGAAGGCAGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1151264 107 - 8785636 GGAGGAAA-------TGAAGAGGAGAATGCCCTTAGACACAAAGG--------------AAAACCC--AGAACG-GAGCAAAA-AGAT-GTAAAGGAGAGAG-------------ATGAAACCCTGAGGAAAGATGGGAAGGCAGC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1619481 107 + 27333823 GGAGGAAA-------TGAAGAGGGGAATGCCCTTAGACACAAAGG--------------AAAACCC--AGAATG-GAGCAAAA-AGAT-GTAAAGGGGAGAG-------------TTGAAACCCTGAGGAAAGATGGGAAGGCAGC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889588 107 - 91010382 GGAGGAAA-------TGAAGAGGGGAATGCCCTTAGACACAAAGG--------------AAAACAC--AGAACA-GAGCAAAA-AGAT-GTAAAGGGGAGAG-------------ATGAAACCCTGAGGAAAGACGGGAAGGCAGC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000603 107 + 5179401 GGAGGAAA-------TGAAGAGGGGAATGCCCTTAGACACAAAGG--------------AAAACCC--AGAACG-GAGCAAAA-AGAT-GTAAAGGGGAGAG-------------AGGAAACCCTGAGGAAAGATGGGAAGGCAGC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7706484 107 - 21726897 GGAGGGAA-------TGAAGAGGGGAATGCCCTTAGACATAAAAG--------------AAAACCC--AGAACA-GAGCAAAA-AGAT-GTTAAGGAGAGAG-------------ATGAAACCCCGAGGAAAGATGGGAAGGCAGC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527621 114 + 204313951 gaagggaa-------tggagagaggaATGCTCTCAGATACAAAGGGAAAC---AT----GAAACCC--AGAACG-GAGCAAGG-AGAT-GTGAAGGATAGAG-------------ATGAAACTCTGCGGAAAGATGGTAAGGCAGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44972914 55 + 71252344 ggagggaa-------aggagagaggaaTGCTCTT------------------------------------------------------------------------------------AAACCCTGCGGAAAGATGGTAAGGCAGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 337415 114 - 1393929 ggagggaa-------tggagagaggAATGCTCTTAGATACAAAGAGAAAC---AT----GAAACCC--AGAACA-GAGCAAGG-AGAT-GTGAAGGACAGAG-------------ATGAAAGCCTGCGGAAAGATGGTAACGCAGC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1414092 114 - 15889662 ggagggaa-------tggagagaggAATGCTTTTAGATACAAATGGAAAC---AT----GAAACCC--AGAACG-GAGCAAGG-AGAT-GTGAAGGATAGAG-------------ATGAAACCCTGCGGAAAGATGGTAAGGCAGC i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76447158 117 + 120421639 TGAGGGAA-------AGGAAAGGTAAG-------AAGAAAAAAGG----C---TG----GGAGATC--ACATTGTGATTAAGA-CAAT-GAAGAGGAAGTAGGAACTCCACACCTATGAAGTCAGGAAGGACATTTAGAAGGCAGC i mm10.chr13 C 0 C 0 s canFam3.chr3 14308507 127 + 91889043 GGAGAGAAGACAAGTTGGGGAGGAAAAGACCTATAGACACAGAGAAAAACAAAAC----AAAACCCTAGGAACA-GAGCAAGGCAGAT-TTAGGGAAGAGAG-------------AGGGAACCCTGAGGAAAGAAGAGAAGACAGC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1225279 114 - 11655695 GGAGAGAA-------TGAGGAAGGACATAGTGATAGTTACAAAGA--------ATTTTAAAAAAGC--AAACAT-GCCAAACA-AGATAATACAGGAGAGAG-------------AGGGAACCCTGGGGAAGGAGGGGGTGGTAGC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84825127 150 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e otoGar3.GL873536 1294736 0 - 29863360 C a score=1448025.000000 s hg38.chr5_GL383530v1_alt 28819 117 + 101241 AGCAAGCACTGTAACCTCTCAGTGGAATGTAAAGTGGAAGGG-GAAGAGTAAAATGTTCTTTCCCACTTGAACTTGGGACATTGACCA-TTCTTGGAATC-TTAAGGCCTACATAATAGT s panTro5.chr5 20257573 117 + 181907262 AGCAAGCACTGTAACCTCTCAGTGGAATGTAAAGTGGAAGGG-GAAGAGTAAAATGTTCTTTCCCACTTGAACTTGGGACATTGACCA-TTCTTGGAATC-TTAAGGCCTACATAATAGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20274870 117 + 183735486 AGCAAGCACTGTAACCTCTCAGTGGAATGTAAAGTGGAAGGG-GAAGAGTAAAATGTTCTTTCCCACTTGAACTTGGGACATTGACCA-TTCTTGGAATC-TTAAGGCCTACATAATAGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760722 116 - 13748885 AGCAAGCACTGTAACCTCTCAGTGGAATGTAAAGTGGAAGGG-GAAGAGTAAAATGTTCTTTCCCACTTGAACTTCGGACATTGACCA-TTCTTGGAATC-TTAAGGCCT-TGGAATAGT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53795888 117 - 163208435 AGCCAGCACTGTAAAATCTCAGTGGAATGTAAAGTGGAAGGG-GAAGAGTAAAATATTCTTTCCCACTTGAACTTGGGACATTGACCA-TTCTTGGAATC-TTAAGGCCTAAATAATAGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87824047 117 - 180051392 GGCAAGCACTGTAACCTCTCAGTGGAATGTGAAGTGGAAGGG-GAAGAGTAAAATGTTCTTTCCCACTGGAACTTGGGACATGGACCA-TTCTTGGAATC-TTAAGGCCTAAATAATAGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87928461 117 - 181584905 GGCAAGCACTGTAACCTCTCAGTGGAATGTGAAGTGGAAGGG-GAACAGTAAAATGTTCTTTCCCACTGGAACTTGGGACATGGACCA-TTCTTGGAATC-TTAAGGCCTAAATAATAGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1151371 117 - 8785636 GGCAAGCACTGTAACCTCTCAGTGGAATGTGAAGTGGAAGGG-GAAGAGTAAAATGTTCTTTCCCACTGGAACTTGGGACATGGACCA-TTCTTGGAATC-TTAAGGCCTAAATAATAGT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1619588 117 + 27333823 GGCAAGCACTGTAACCTCTCAGTGGAATGTGAAGTGGAAGAG-GAAGAGTAAAATGTTCTTTCCCACTGGAACTTGGGACATGGACCA-TTCTTGGAATC-TTAAGGCCTAAATAATAGT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889695 117 - 91010382 GGCAAGCACTGTAACCTCTCAGTGGAATGTGAAGTGGAAGGG-GAAGAGTAAAATGTTCTTTCCCACTGGAACTTGGGACATGGACCA-TTCTTGGAATC-TTAAGGCCTAAATAATAGT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000710 117 + 5179401 GGCAAGCACTGTAACCTCTCAGTGGAATGTGAAGTGGAAGGG-GAAGAGTAAAATGTTCTTTCCCACTGGAACTTGGGACATGGACCA-TTCTTGGAATC-TTAAGGCCTAAATAATAGT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7706591 117 - 21726897 AGCAAGCACTGTAACCTCTCAGTGGAATGTGAAGTGGAAGGG-GAAGAGTAAAATGTTCTTTCCCACCAGAACTTGGGACATGGACCA-TTCTTGGAATC-TTAAGGCCTAAATAATAGT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527735 117 + 204313951 AGCAAGCACTGTAACTGCTCAGTGGAATGTAAAGTGGAAGAC-GAAGGGTAAAGTGTTCTTTCCCACTTGAACGTGGGACACTGACCA-TTCTTGGACTC-TTAAGGCCTAATTAATAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44972969 116 + 71252344 AGCAAGCACGGTAACCGCTCAGT-GAATGTAAAGCGGAAGAG-GAGGGGTAAAATGTTCTTTCCCACTGGAACGTGGGACACTGTCCA-TTCTTGGACCC-TTAAGGCTTAATTAATAGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 337529 116 - 1393929 AGCAAGCGCTGTAACAGCTCAGT-GAATGTAAAGTGGAAGAG-GAGGAGTAAAATGTTCTTTCCCACGGGAACGTGGGACATTGACCA-TTCTTGGACTC-TTAAGGCCTAATTAATAGT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1414206 117 - 15889662 AGCAAGCACTGTAACCGCTCAGTGGAATGTAAAGTGGAAGAG-GAAGGGTAAAATCTTCTTTCCCACTGGAACGTGGGACATTGACCA-TTCTTGGACTC-TTAAGGCCTAATTAATAGT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84825277 111 + 108143057 AGCAAGCACTATAAACTCTCCGTGGAATATAAAGTAGAAGTG-GAAGG------TATTCTTTCTCACTTGAACTTGGAACATTTACCA-CTCTTGGAATC-TTAAGTCCTGATTAATAGT i micMur3.chr12 I 150 C 0 s mm10.chr13 76447275 108 + 120421639 AGCCTGCACA--AGTCCCT---TGGAATCT-ATGTTGAAGAC-AGAAGGGGACATATTCTTTCCCACTTGAACTTGGAACATTTACTACTTCTCACAAGA-TTGA----TAAATGACAGT i mm10.chr13 C 0 C 0 s canFam3.chr3 14308634 115 + 91889043 AGCTAGTACTGTGGAGTCTAAGTAGAATCTAAGGTGGAAGTG-AAAGGCTAAAGCGTTCTTTCTCGCTTGAGCTTGGAGTATTTACCA-CTCTTGGAAA---TAAGAGCTGATTAATAGT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1225393 119 - 11655695 AGAAAGCACTGCGGAATCCCAGTGGAATCTTCAGCGGAAGGGTGAGAAGTGAAGTGTTCTTTCTCACTTGAGTTTTGAGCATTTACCA-TTCTTTGAATTGCTGTGCACTAATTAGTAGC i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 582562 2852 - 10520994 T e otoGar3.GL873536 1294736 0 - 29863360 C a score=30248.000000 s hg38.chr5_GL383530v1_alt 28936 4 + 101241 ATAG s panTro5.chr5 20257690 4 + 181907262 ATAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20274987 4 + 183735486 ATAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760838 4 - 13748885 ATAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53796005 4 - 163208435 ATAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87824164 4 - 180051392 CTAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87928578 4 - 181584905 CTAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1151488 4 - 8785636 CTAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1619705 4 + 27333823 CTAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889812 4 - 91010382 CTAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000827 4 + 5179401 CTAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7706708 4 - 21726897 ATAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527852 4 + 204313951 ATCG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44973085 4 + 71252344 ATCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 337645 4 - 1393929 ATTG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1414323 4 - 15889662 ATCG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84825388 4 + 108143057 ATAG i micMur3.chr12 C 0 I 58 s otoGar3.GL873536 1294736 4 - 29863360 ATGT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76447383 4 + 120421639 TCAG i mm10.chr13 C 0 I 11 s canFam3.chr3 14308749 4 + 91889043 GTAG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1225512 4 - 11655695 ATAG i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 582562 2852 - 10520994 T a score=284846.000000 s hg38.chr5_GL383530v1_alt 28940 28 + 101241 GAC-AATG-GATA------------------TATAT-TCTTTATTTTCA s panTro5.chr5 20257694 28 + 181907262 GAC-AATG-GATA------------------TATAT-TCTTTATTTTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20274991 28 + 183735486 GAC-AATG-GATA------------------TATAT-TCTTTATTTTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760842 28 - 13748885 GAC-AATG-GACA------------------TATAT-TCTTTATTTTCG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53796009 28 - 163208435 GAC-AATG-GATA------------------TATAT-TCTTTATTTTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87824168 28 - 180051392 GAC-AATG-GATA------------------TATAT-TCTTTATTTTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87928582 28 - 181584905 GAC-AATG-GATA------------------TATAT-TCTTTATTTTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1151492 28 - 8785636 GAC-AATG-GATA------------------TATAT-TCTTTATTTTCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1619709 28 + 27333823 GAC-AATG-GATA------------------TATAT-TCTTTATTTTCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889816 28 - 91010382 GAC-AATG-GATA------------------TATAT-TCTTTATTTTCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000831 28 + 5179401 GAC-AATG-GATA------------------TATAT-TCTTTATTTTCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7706712 28 - 21726897 GAC-AATG-GATA------------------TATAT-TCTTTATTTTCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527856 29 + 204313951 AAT-GATGTGATA------------------TATAT-TCTTTATTTTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44973089 29 + 71252344 GAC-GATGCGATA------------------TGTAT-TCTTTATTTTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 337649 29 - 1393929 GAC-GATGTGACA------------------TATAT-TCTTTATTTTCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1414327 29 - 15889662 GAC-GATGTGATA------------------TATAT-TCTTTATTTTCA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1294740 28 - 29863360 GAC-ATAC-TGTA------------------TATAT-CCTCGTTTTCGA i otoGar3.GL873536 C 0 I 8 s mm10.chr13 76447398 29 + 120421639 CAC-TATG-TAAA------------------TGTGTATCTATGCATGTA i mm10.chr13 I 11 C 0 s canFam3.chr3 14308753 30 + 91889043 GACAAatg-tata------------------tatacatatatatattta i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1225516 46 - 11655695 AGC-AATG-TGTAATATGCTCACTCTTTAATTTTTT-TCTTTTTTTTAA i dasNov3.JH570378 C 0 I 102 e micMur3.chr12 84825392 58 + 108143057 I e proCoq1.NW_012147189v1 582562 2852 - 10520994 T a score=157102.000000 s hg38.chr5_GL383530v1_alt 28968 9 + 101241 TTAT--------TCATT s panTro5.chr5 20257722 9 + 181907262 TTAT--------TCATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20275019 9 + 183735486 TTAT--------TCATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760870 9 - 13748885 TTAT--------TCATT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53796037 9 - 163208435 TTAT--------TCATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87824196 9 - 180051392 TTAT--------TCATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87928610 9 - 181584905 TTAT--------TCATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1151520 9 - 8785636 TTAT--------TCATT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1619737 9 + 27333823 TTAT--------TCATT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889844 9 - 91010382 TTAT--------TCATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000859 9 + 5179401 TTAT--------TCATT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7706740 9 - 21726897 TTAT--------TCATT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527885 9 + 204313951 TTAT--------TCATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44973118 9 + 71252344 TTGT--------TCATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 337678 9 - 1393929 TTAT--------TCATT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1414356 9 - 15889662 TCAT--------TCATT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84825450 9 + 108143057 TTAT--------TCATT i micMur3.chr12 I 58 C 0 s proCoq1.NW_012147189v1 579710 9 - 10520994 TTAT--------TCATT i proCoq1.NW_012147189v1 T 2852 C 0 s otoGar3.GL873536 1294776 9 - 29863360 TCAT--------TCATT i otoGar3.GL873536 I 8 C 0 s mm10.chr13 76447427 17 + 120421639 TTATGTTTTAAAGCTTT i mm10.chr13 C 0 C 0 s canFam3.chr3 14308783 9 + 91889043 ttat--------taatt i canFam3.chr3 C 0 I 110 s dasNov3.JH570378 1225664 9 - 11655695 TTAT--------TCATT i dasNov3.JH570378 I 102 C 0 a score=1542927.000000 s hg38.chr5_GL383530v1_alt 28977 105 + 101241 TGCTCCTGGTTTG-GGAAGGGTATGCATATTTGTTAGCATCTAATCTCTTTTGGAGCTGGTATTGTAAAGTTCCTTGTATGTTCCTATAGCCTGGGTCAGAAGCCA s panTro5.chr5 20257731 105 + 181907262 TGCTCCTGGTTTG-GGAAGGGTATGCATATTTGTTAGCATCTAATCTCTTTTGGAGCTGGTATTGTAAAGTTCCTTGTATGTTCCTATAGCCTGGGTCAGAAGCCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20275028 105 + 183735486 TGCTCCTGGTTTG-GGAAGGGTATGCATATTTGTTAGCATCTAATCTCTTTTGGAGCTGGTATTGTAAAGTTCCTTGTATGTTCCTATAGCCTGGGTCAGAAGCCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760879 105 - 13748885 TGCTCCTGGTTTG-GGAAGGGTATGCCTATTTGTTAGCATCTAATCTCTTTTGGAACTGGTATTGTAAAGTTCCTTCTATGTTCCTATAGGCTGGGTCAGAAGCCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53796046 105 - 163208435 TGCTCCTGGTTTG-GGAAGGGTATGCATATTTGTTAGCATCTAATCTCTTTTGGAGCTGGTATTGTAAAGTTCCTTGTGTGTTCCCATAGCCTGGGTCAGAAGCCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87824205 105 - 180051392 TGCTTCTGGTTTG-GGAAGCGTGTGCATATTTGTTAGCATCTAATCTCTTTTGGAACTGGTATTGTAAAGTTCCTTGTATGTTCCCATAGCCTGGGTCAGAAGCCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87928619 105 - 181584905 TGCTTCTGGTTTG-GGAAGCGTGTGCATATTTGTTAGCATCTAATCTCTTTTGGAACTGGTATTGTAAAGTTCCTTGTATGTTCCCATAGCCTGGGTCAGAAGCCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1151529 105 - 8785636 TGCTTCTGGTTTG-GGAAGCGTGTGCATATTTGTTAGCATCTAATCTCTTTTGGAACTGGTATTGTAAAGTTCCTTGTATGTTCCCATAGCCTGGGTCAGAAGCCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1619746 105 + 27333823 TGCTTCTGGTTTG-GGAAGAGTGTGCATATTTGTTAGCATCTAATTTCTTTTGGAACTGGTATTGTAAAGTTCCTTGTATGTTCCCATAGCCTGGGTCAGAAGCCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889853 105 - 91010382 TGCTTCTGGTTTG-GGAAGAGTATGCATTTTTGTTAGCATCTAATCTCTTTTGGAACTGGTATTGTAAAGTTCCTTGTATGTTCCCATAGCCTGGGTCAGAAGCCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000868 105 + 5179401 TGCTTCTGGTTTG-GGAAGAGTGTGCATATTTGTTAGCATCTAATCTCTTTTGGAACTGGTATTGTAAAGTTCCTTGTATGTTCCCATAGCCTGGGTCAGAAGCCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7706749 105 - 21726897 TGCTTCTGGTTTG-GGAAGAGTATGCATATTTGTTAGCATCTAATCTCTTTTGGAACTGGTATTGTAAAGTTCCTAGTATGTTCCCATAGCCTGGGTCAGAAGCCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527894 104 + 204313951 TGCTCCTAGTCTG-GGAAGGGTATGC-TATTTATTAGCATTTAATCTCTTTTGGAGCTGGTATTGTCAGCTTCCTTGTATGTTCCCATAGCCTGGGTCAGAAGCCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44973127 105 + 71252344 TGCTTCTAGTTTG-GGAAGGGTATGCTTATTTATTAGCATCTAATCTCTTTTGGAGCTGGTATCGTAAATTTCCTTGTATGTTCCCATAGCCTGAGTCAGAAGCCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 337687 103 - 1393929 TGCTCCTAGTTTG-AGAAGGGTGTGCGTATTTATTAGCATCCAATCTC-TTTGGAGCTGGTATCGTAAACTTCCTTGTATGTTCCCATAGTCTG-GTCAGAAGCCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1414365 105 - 15889662 TGATCCTAGTTTG-GGAAGGGTATGCATATTTATTAGCATCTAATCTCTTTTGGAGCTGGTATCGTCAACTTCCTTGTATGTTCCCATAGCCTGGGTCAGAAGCCA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84825459 105 + 108143057 TGCTCCTGGTTGT-TGAAGGTTTTGCATATTTGTTAGCAGCTGATCCTTTTTGGAGCTGGAACCTTGAAGTTCCTGGTGTGTTCTCATATCCTGGGTCAGAAGCCA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 579719 105 - 10520994 TTCTCCTTGTTGT-TGAAGGTTATGCATATTTGTTAGCAGCTAATCCCTTTTTGAGCTGGTACCTTGAAGTTCCTGGTATGTTCTCATATCCTGGGTCAGAAGCCA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1294785 91 - 29863360 TGCTCCTGGTTGC-TGGCTGTCATGC----TTGTTAGCAGCTGATCTCTGTTGGAGTTGGTACCTT----------GTATATTCTAATATCCTGGGTCTGAAGCCA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76447444 86 + 120421639 TGCTGTTAGCTAT-GGAAGAGTGTGCAAAGTTGTAGACAGCT-------------------ATCTTAAAGTTTCTTGGATGGTGTCAAATCCCAGGCCTACCACCA i mm10.chr13 C 0 C 0 s canFam3.chr3 14308902 106 + 91889043 tGCTCTTAGGGTGTTGAAGTTCATGCATGCCTGTTGTCAGCTAGTCTCTTTTGGAGCTGGTACCTTAAAATTCCTTGCATGCTCTCATATCTCCGGTCAGAAGCCA i canFam3.chr3 I 110 C 0 s dasNov3.JH570378 1225673 106 - 11655695 TGCTCCTAGGGTGTTGAAGGTTTTATATATCTGTTAGCAGCTTATCTTCTTTGGTGCTAGTACTTTAAAGTTTCTTTTACCTTCCCATCTCCTGTGACAGAAGCCA i dasNov3.JH570378 C 0 I 237 a score=2085557.000000 s hg38.chr5_GL383530v1_alt 29082 154 + 101241 TTACT-----GTCTGGAGTTGGGAGAT-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAAGAGGGAAATCAGCTG----AATTATTCTAACATCTCTGAGGCCTATACTGCTGACACCTGTGTCAGGTCATGAATAA-ATGATT-TTTTAACTGCCATGCTTTT-----------------------------------------AGAAGATTC s panTro5.chr5 20257836 152 + 181907262 TTACT-----GTCTGGAGTTGGGAGAT-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAAGAGGGAAATCAGCTG----AATTATTCTAACGTCTCCGAGGCCTATACTGCTGACACCTGTGTCAGGTCATGAATAA-ATGATT-TT--AACTGCCATGCTTTT-----------------------------------------AGAAGATTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20275133 152 + 183735486 TTACT-----GTCTGGAGTTGGGAGAT-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAAGAGGGAAATCAGCTG----AATTATTCTAACATCTCCGAGGCCTATACTGCTGACACCTGTGTCAGGTCATGAATAA-ATGATT-TT--AACTGCCATGCTTTT-----------------------------------------AGAAGATTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4760984 154 - 13748885 TTACT-----GTCTGGAGTTGGGAGAT-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAAGAGGGAAATCAGCTG----AATTATTCTAACATCTCTGAGGCCTATACTGCTGACACCTGTGTCAGGTCATGAATAA-ATGATT-TTTTAACTGCCATGCTTTT-----------------------------------------AGAAGATTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53796151 154 - 163208435 TTACT-----GTCTGGAGTTGGGAGAT-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAAGAGGGAAATCAGCTG----AATTATTCTAACATCTCTGAGGCCTATACTGCTGACACCTGTGTCAGGTAATGAATAA-ACGATT-TTTTAACTGCCATGTTTTT-----------------------------------------AGAAGATTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87824310 154 - 180051392 TTACT-----GTCTGGAGTTGGGAAAT-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAAGAGGGGAATCAGCTG----AATTATTCTAACATCTCTAAGGCCTATACTGCTGACACCTGTGTCAGTCAACGAATAA-ATGATT-TTTTAACTGTCATGTTTTT-----------------------------------------AGAATATTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87928724 154 - 181584905 TTACT-----GTCTGGAGTTGGGAAAT-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAAGAGGGGAATCAGCTG----AATTATTCTAACATCTCTAAGGCCTATACTGCTGACACCTGTGTCAGTCAATGAATAA-ATGATT-TTTTAACTGTCATGTTTTT-----------------------------------------AGAATATTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1151634 154 - 8785636 TTACT-----GTCTGGAGTTGGGAAAT-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAAGAGGGGAATCAGCTG----AATTATTCTAACATCTCTAAGGCCTATACTGCTGACACCTGTGTCAGTCAATGAATAA-ATGATT-TTTTAACTGTCATGTTTTT-----------------------------------------AGAATATTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1619851 154 + 27333823 TTACT-----GTCTGGAGTTGGGAGAT-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAAGAGGGGAATCAGCTG----AATTATTCTAACATCTCTAAGGCCTATACTGCTGACACCTGTGTCAGTCAATGAATAA-ATGATT-TTTTAACTGTCATGTTTTT-----------------------------------------AGAATATTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1889958 154 - 91010382 TTACT-----GTCTGGAGTTGGGAGAT-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAAGAGGGGAATCAGCTG----AATTATTCTAACATCTCTAAGGCCTATACTGCTGACACGTGTGTCAGTCAATGAATAA-ATGATT-TTTTAACTGTCATGTTTTT-----------------------------------------AGAATATTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2000973 154 + 5179401 TTACT-----GTCTGGAGTTGGGAGAT-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAAGAGGGGAATCAGCTG----AATTACTCTAACATCTCTAAGGCCTATACTGCTGACACCTGTGTCAGTCAATGAATAA-ATGATT-TTTTAACTGTCATGTTTTT-----------------------------------------AGAATATTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7706854 154 - 21726897 TTACT-----GTCTGGAGTTGGGAGAT-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAAGAGGGGAATCAGCTG----AATTATTCTAACATCTCTAAGGCCTATACTGCTGACACCTGTGTCAGTCAATGAATAA-ATGATT-TTTTAACTGTCATGTTTTT-----------------------------------------AGAATATTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112527998 154 + 204313951 TTACT-----GTCTGGAGTTGGGAGAG-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAAAAGGAACATCAGCTG----AATGATTCCAACACCTCTAATGCCTATACTCCTGACACCTGTGTCAGGTAATGAATAA-ATGATC-TTTTAGCTGCCATGTTTTT-----------------------------------------AGAAGATTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44973232 154 + 71252344 TTACT-----GTCTGGAGTTGGGAGAG-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAACAGCAAAATCAGCTG----AATTATTCCAACATCTCTAATGCCTATACTGCTGATATCTGTGTCAGGTAATGAATAA-ATGATC-TTTTAGCTGCCATGTTTTT-----------------------------------------AGAAGATTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 337790 154 - 1393929 TTACT-----GTCTGGAGTTGGGAGAG-------GTCCAAT--TTATTATGAAAA------------------------------------TGTTAAGAGGAACATCAGCTG----AATTATTCCAACATCTCTAATGCCTATACTGTTGACACTTGTGTCAGGTAATGAATAA-ATGATC-TTTTAGCTGCCATGTTTTT-----------------------------------------GGAAGATTC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1414470 154 - 15889662 TTACT-----GTCTGGAGTTGGGAGAG-------GTCCAAT--TTATTATGAAAA------------------------------------TATTAAGAGGAAAATCAGCTG----AATTATTCCAACATCTCTAATGCCTATACTGCTGACACCTGTGTCAGGTAATGAATAA-ATGATC-TTTCAGCTGCCATGTTTTT-----------------------------------------AGAAAATGC i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84825564 160 + 108143057 TCACTACTT----TGGAGTTGGGAGAT-------GTCCAAC--CTGTCATGGAAA--------------------------------TTTTTGTTAAGAGGGAAATTAGTTA----AATTATTCCGACATCTCTAACATCTATACTGCTGACATCTCTATCAGGTAATGAATAA-ATGATCTTTTTAACTGCTGTGTTTTT-----------------------------------------AGAAGAATC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 579824 163 - 10520994 TCACTACTTTGTCTGGAGTTGGGCAAT-------GTCCAAC--CAGTCATGAAAA--------------------------------TTTTTGTTATGAGGGAAATCAGCTG----AATTATTCCAATATCTTTAA-ATCTATACTGCTGACATCTCCATCAGGTAATGAATAA-ATGATCTTTTTAACTGCTGTGTTTTT-----------------------------------------AGAAGAATC i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1294876 142 - 29863360 TCACTGCCTTGTCTGGAGTTGGGACAT-------GTCCAAC--CTGTCATGAAGA--------------------------------TTTCTGTTAAGAGGGAA------------------------ATCTTTAATATCTACACTGCTGACAT-GCTATCAGGGAATGAATAA-ATGATC-TTTTAACTGCTGTGTTTTT-----------------------------------------AGAATAATC i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76447530 148 + 120421639 TCACC---CACTTTGAAGTTGGGTGAT-------CCCACAC--TTGCCATGAAAA------------------------------------TGTGTGGTGGGAAAGTGGATGAACTAACTATCCAAACCTCT-----ACCTTTATTGCTGTCTCCGAATACAGGCAATGAATA-----ATC-TGGTGGCTGTGGTGTTTTC-----------------------------------------AGAAGG--- i mm10.chr13 C 0 C 0 s canFam3.chr3 14309008 196 + 91889043 TCACC-----ACCTTATGTGGTCA-----------CTCAAT--ATGTTGTCAGAA--------------------------------TTTTTGTTCAGAGGGAAGTCAGTTG----AAATATTCCAACATCTCTAATCCCTATAGTACTGACACTTATATCAGATAGTGAATAACCTGACC-TTTTAACTGCCATGTTTTTGTGGGCCTTtttattttttatttatttatttatttattttaagtagactc i canFam3.chr3 C 0 I 113 s dasNov3.JH570378 1226016 182 - 11655695 TTAGT-----ATGTAGAGTAGAAAGATATAGTAAATCTAATAGTTAATATGTAAAAAAAATAGTTTTTGTGTAAATTTGTTTAAGAATTTTTGTTAGGAAGGCAATTAACTG----AATTACATTAACATTT-TAATACTCATACTTCTGACACCTGTATCAGGTAATGAATGC------------------CATGTCTTC-----------------------------------------ATAAGGATC i dasNov3.JH570378 I 237 C 0 a score=4796539.000000 s hg38.chr5_GL383530v1_alt 29236 302 + 101241 TTTTAAAATGGTAGCCAGTAAGTGGGCTGTCAGGTATT--ATTAATAGT----AGGCTGAGTCCATGGAGAATCCAGAG--GAAACATTAACATGTAAGAGCT-CATTATTCTACTGGTATGAGACACCTATGAGCTATTTTTGCATGCTTATCTGAGAAATGATGAGAAATTTATTTTTGTAAGCTAAAAG--AAA----AAAAATCTCTGTGGTTGATTGGTTTAATCTTTAGGTTTTACTTTATATTCTATTTCCAGCAAAAGCCTCTTAATATGTTCTTTATTACCCTTCAGGAACATGTTCTGGTGCATGTT- s panTro5.chr5 20257988 302 + 181907262 TTTTAAAATGGTAGCCAGTAAGTGGGCTGTCAGGTATT--ATTAATAGT----AAGCTGAGTCCATGGAGAATCCAGAG--GAAACATTAACATGTAAGAGCT-CATTATTCTACTGGTATGAGACACCTATGAGCTATTTTTGCATGCTTATCTGAGAAATGATGAGAAATTTATTTTTGTAAGCTAAAAG--AAA----AAAAATCTCTGTAGTTGATTGGTTTAATCTTTAGGTTTTACTTTATATTCTATTTCCAGCAAAAGCCTCTTAATATGTTCTTTATTACCCTTCAGGAACATGTTCTGGTGCATGTT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20275285 301 + 183735486 TTTTAAAATGGTAGCCAGTAAGTGGGCTGTCAGGTATT--ATTAATAGT----AGGCTGAGTCCATGGAGAATCCAGAG--GAAACATTAACATGTAAGAGCT-CATTATTCTACTGGTATGAGACACCTATGAGCTATTTTTGCATGCTTATCTGAGAAATGATGAGAAATTTATTTTTGTAAGCTAAAAG---AA----AAAAATCTCTGTAGTTGATTGGTTTAATCTTTAGGTTTTACTTTATATTCTATTTCCAGCAAAAGCCTCTTAATATGTTCTTTATTACCCTTCAGGAACATGTTCTGGTGCATGTT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761138 301 - 13748885 TTTTAAAATGGTAGCCAGTAAGTGGGCCGTCAGGTATT--ATTAATAGT----AGGCTGAGTCCATGGAGAATCCAGAG--GAAACATTAACATGTAAGAGCT-CATTATTCTACTGGTATGAGACACCTATGAGCTATTTTTGCATGCTTATCTGAGAAATGATGAGAAATTTCTTTTTGTAAGCTAAAAG---AA----AAAAATCTCTGTAGTTGATTGGTTTAATCTTTAGGTTTTACTTTATATTCTATTTCCAGCAAAAGCCTCTTAATATGTTCTTTATTACCCTTCAGGAACATGTTCTGGTGCATGTT- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53796305 301 - 163208435 TTTTAAAATGGTAGCCAATAAGTGGGCTGTCAGGTATT--ATTAATAGT----AGGCTGAGTCCATGGAGAATCCAGAG--GAAACATTAACATGGAAGAGCT-CATTATTCTACTGGTATGAGACACCTATGAGCTATTTTTGCATACTTATCTGAGAAATGATGAGAAATTTCTTCTTGTAAGCTAAAAG---AA----AAAACTCTCTGTAGTTGATTGGTTTAATTTTTAGGTTTTACTTTATATTCTATTTCCAGCAAAAGCCTCTTAATATGTTCTTTATTACCCTTCAGGAATATGTTCTGGTGCATGTT- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87824464 302 - 180051392 TTTTAAAACGGTAGCCAATAAGTGGGCTGTCAGGTATT--ATTAATAGT----AGGCTGAGTCCATGGAGAATCCAGAG--GAAACATTAACATGTAAGAGCT-CATTATTCTACTGATATGAGACACCTATGAGCTATTTTTGCATACTTATCTGAGAAATGATGAGAAATTTCTTCTTGTAAGATAAAAG--AAA----AAAAATCTCTGTAGTCGATTGGTTTAAATTTTAGGTTTTAGTTTCTATTCTATTTCCAGCAAAACCCTCTTGATATGTTCTTTACTACCCTTCAGGAACATGTTCTGGTGCATGTT- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87928878 302 - 181584905 TTTTAAAACGGTAGCCAATAAGTGGGCTGTCAGGTATT--ATTAATAGT----AGGCTGAGTCCATGGAGAATCCAGAG--GAAACATTAACATGTAAGAGCT-CATTATTCTACTGATATGAGACACCTATGAGCTATTTTTGCATACTTATCTGAGAAATGATGAGAAATTTCTTCTTGTAAGATAAAAG--AAA----AAAAATCTCTGTAGTCGATTGGTTTAAATTTTAGGTTTTAGTTTCTATTCTATTTCCAGCAAAAGCCTCTTGATATGTTCTTTACTACCCTTCAGGAACATGTTCTGGTGCATGTT- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1151788 302 - 8785636 TTTTAAAACGGTAGCCAATAAGTGGGCTGTCAGGTATT--ATTAATAGT----AGGCTGAGTCCATGGAGAATCCAGAG--GAAACATTAACATGTAAGAGCT-CATTATTCTACTGATATGAGACACCTATGAGCTATTTTTGCATACTTATCTGAGAAATGATGAGAAATTTCTTCTTGTAAGATAAAAG--AAA----AAAAATCTCTGTAGTCGATTGGTTTAAATTTTAGGTTTTAGTTTCTATTCTATTTCCAGCAAAAGCCTCTTGATATGTTCTTTACTACCCTTCAGGAACATGTTCTGGTGCATGTT- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1620005 302 + 27333823 TTTTAAAACGGTAGCCAATAAGTGGGCTGTCAGGTATT--ATTAATAGT----AGGCTGAGTCCATGGAGAATCCAGAG--GAAACATTAACATGTAAGAGCT-CATTATTCTACTGATATGAGACACCTGTGAGCTATTTTTGCATACTTATCTGAGAAATGATGAGAAATTTCTTCTTGTAAGATAAAAG--AAA----AAAAATCTCTGTAGGCGATTGGTTTAAATTTTAGGTTTTAGTTTCTATTCTATTTCCAGCAAAAGTCTCTTGATATGTTCTTTACTACCCTTCAGGAACATGTTCTGGTGCATGTT- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1890112 302 - 91010382 TTTTAAAACGGTAGCCAATAAGTGGGCTGTCAGGTATT--ATTAATAGT----AGGCTGAGTCCATGGAGAATCCAGAG--GAAGCATTAACATGTAAGAGCT-CATTATTCTACTGATATGAGACACCTATGAGCTATTTTTGCATACTTATCTGAGAAATGATGAGAAATTTCTTCTTGTAAGATAAAAG--AAA----AAAAATCTCTGTAGTCGATTGGTTTAAATTTTAGGTTTTAGTTTCTATTCTATTTCCAGCAAAAGCCTCTTGATGTGTTCTTTACTACCCTTCAGGAACATGTTCTGGTGCATGTT- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2001127 303 + 5179401 TTTTAAAACGGTAGCCAATAAGTGGGCTGTCAGGTATT--ATTAATAGT----AGGCTGAGTCCATGGAGAATCTAGAG--GAAACATTAACATGTAAGAGCT-CATTATTCTACTGATTTGAGACACCTGTGAGCTATTTTTGCATACTTATCTGAGAAATGATGAGAAATTTCTTCTTGTAAGATAAAAG-AAAA----AAAAATCTCTGTAGTCGATTGGTTTAAATTTTAGGTTTTAGTTTCTATTCTATTTCCAGCAAAAGCCTCTTGATATGTTCTTTACTACCCTTCAGGAACATGTTCTGGTGCATGTT- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7707008 301 - 21726897 TTTTAAAATGGTAGCCAATAAGTGGGCTGTCAGGTATT--ATTAATAGT----AGGCTGAGTCCATGGAGAATCCAGAG--GAAACATTAACATGTAAGAGCT-CATTATTCTACTGGTATGAGACACCTATGAGCTATTTTTGCATACTTATCTGAGAAATGATGAGAAATTTCTTCTTGTAAGATAAAAG---AA----AAAAATCTCTGTAGTCGATTGGTTTAAATTTTAGGTTTTAGTTTATATTCTATTTCCAGCAAAAGCCTCTTGATATGTTCTTTACTACCCTTCAGGAACATGTTCTGGTACATGTT- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112528152 298 + 204313951 TTTTAAAATGGTAGCCAATAAGGGGGCTGTCAGGTATT--ATTAATAGG----AGACTGAGTCCATGGAGAATCCCGAG--GAAACATTATGATGTTAGAGCT-CACTATTCTACTGGTATGAGACACCTATGAACTATTTTTGGATACTTATCTGAGAACTGATGAGAAATTTCTTCTTGTAAGCTAAAAG-AAAA----AAAAATCTCTGTAGTTGATTGGTTTAATTTTTAGGTTTTAGTTTCCATTCTATTTCCAGCAAAAGCCTTTTGATATGTTCTTTACTACCCTTCAGGAACA-----TGGTACATGTT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44973386 304 + 71252344 TTTTAAAATGCTAGCCAATAAGGGGGCTGTCAGGTATT--ATTAATAGG----AGACTGAGTCCATGGAGAATCCAGAG--GAAACACTGTGATGTAAGAGTT-CACTATTCTACTGGTGTGAGACACTTATGAACTATTTTTGCATACTTATCTAACAATGGACGAGAAATTTCTTCTTGTAAGCCAAAAGAAAAA----AAAAATCTCTGTAGTTGATTGGTTTAATTTTTAGGTTTTAGTTTCCATTCTATTTCCAGCAAAAGCCTTTTGTTATGTTCTTTACTACCCTTCAGGAACATGCTCTGGTGCATGTT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 337944 303 - 1393929 TTTTAAAGTGGTAGCCAATAAGGGGGCTGTCAGGTATT--ATTAATAGG----AGACTGAGTCCATGGAGAATCCAGAG--GAAACATTATTATGTAAGAGCT-CACTATTCTACTGGTGTGAGACACCTATGAACTATTTTTGCATACTTATCTGAGAACTGATGAGAAATTTCTTCTTGTAAGCCAAAAG-AAAA----AAAAATATCTGTAGTTGATTGGTTTAATTTTTAGGTTTTAGTTTCCATTCTATTTCCAGCAAAAGCCTTTTGATATGTTCTTTACTACCCTTCAGGAACATGTTCTGGTGTATGTT- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1414624 299 - 15889662 TTTTAAAATGGTAGCCAATAAGGGGACTGTTAGGTATT--ATTAATAGG----AGACTGAGTCCATGGAGAATCCAGAG--GAAACATTATGATGTAAGAGCT-CACTATTCTACTGGTATGAGACACCTATGAACTATTTTTGCATACTTATCTGAGAACTGATGAGAAAT---TTCTTGTAAGCCAAAAG--AAA----AAAAGTCTCTGTAGTTGATTTGTTTAATTTTTAGGTTTTAGTTTCCATTCTATTTCCAGCAAAAGCCTTTTGATATGTTCTTTACTACCCTTCAGGAACATGTTCTGGTGCATGTT- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84825724 298 + 108143057 TTTTAAAATGGTAGCCAAGAAATAGGCTGTCAGGTGTT--ATTAATAGT----AGGCTGAGTCCATAGAGAATCCAGAG--GAAACATTATCATGTAAGAGCT-CATTATTCCACTGGTATGAGACACCTAGGAGCTATTTTTGCATACTTATCTGAAAAATGAGGAAAAACTTCTTT---TAAGCTT-AAA--AAA----AAACACCTCTGTAGCTGACTGGCTTAATTTTTAGGTTTTAGTTTATATTCTATTTTTGGCAAAAGCCTTTTATTATGTTTTTCACTGTCATTCAGGAACATATTCTGGTGCATGTT- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 579987 302 - 10520994 TTTTAAAATGGTAGCCAAGAAATAGGTTGTCAGGTGTT--ATTAATAGT----AGGCTGAGTCCATAGAGAATCCAGAG--GAAACATTATCATGTAAGAGCT-CATTATTCTACTGGTATGAGACACCTATGAGCTATTTTTGCATACTTATCTGAGAAATGAGGAAAAACTTCTTCTTGTAAGTTTAAAA--AAA----AAAAACCTCTGTAGTTGACTGGTTTAATTTTTAGGTTTTAGTTTATATTCTATTTTTGGCAAAAGCCTTTTATTATGTTCTTCACTACCATTCAGGAACACATTCTGGTACATGTT- i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1295018 299 - 29863360 TTTTAAAATGGTAGCCAAGAAATAGGATGTCAGGTGTT--ATTAATAGT----AGTCTGAGTCCGTAGAGAATCCAAAG--GAAACATTATCATGGAAGAGCT-CATTATTCTACTGGTATGAGACACCTAGGAGCTATTTTTACACACTTATCTGAGAAATGAAGAGAAACTTCTACTTGTAAGCTAAAAA--AAATTTTAAAACCCTCTTTAGTTGACGGGtttaat-------ttttattttatattctatttttGGAAAAAGCCTTTTATTATGTTCTCCACTACCATTCAGGAACATGTTCTGGCACACACT- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76447678 276 + 120421639 CTTTAAAATAGTAGCCAATGAGAAGATTGTCA-GTGCT--ATTAATAGT----AAGTTGAGTCTACAGAGAAGACAGAG--GAAATG-TAGCATACAAGAACT-CATTATTCCTCTAGAATGAAACACCAGTTATCTATTTTTGCACACTTATCTGAGAAACAAAGACATTTTTCCTTTT------TATAAG---------------TTCTGTAACTGATGGGTTTAATTTTGAGG-TTCAGT-----TGCTATTTCTACCAAAAGCCTGTAACTG---CCTTTGCTAGCATTCAGGAACAGGTTCTGATGCATGTT- i mm10.chr13 C 0 I 8190 s canFam3.chr3 14309317 298 + 91889043 TTTTAAAATAGTAGCAAATAAATAGGCCAACAGGTGTTTAATGAATAGTGAGAAGGCTGAGTTCATAGGGGAGGCAGAG--GAAACATTACAATGTAAGAGCTGCATTGGTCTACTGGTATGAGCCACC-ATGAGTTGTTTTGGCACATTTATCTGAGAAATGAGGAAAAAGTTCTATTTGTAGGCTAAAAA---AA----------CTCTGTAGTTGACTGGTTTAGTTTTCAGATTTTAATTTACGTTCTCTTTCCAGCTGAAGCCTTTCAATATGTAC---AGTGCTGTTCAGGAGCATGTTCTGATGCATGTT- i canFam3.chr3 I 113 C 0 s dasNov3.JH570378 1226198 278 - 11655695 TTTTTAAATAGTAGCAAATCAAT---CTGTCAGGT-TT--ATTAATAAT----AGGCTGTGTCCACAGTGAATGCAGAGCAGAAATATTACCATGTATCAGCTGCATTATTCCACTGGTCTGAGATGGCTGTAAGCTCTTTTTGCCCACCCCTCTGAGAAT--AGGGAAAATT--TTCTTGTAAGCTGGAAG---AA----------CTTAGGAGT----TGTTTTAATTTTCTGGTTT--------AGTCTGTTACCAGCAAAGTCCCGCTAAGCTGTTTTTCACTACCATCC-GGAATGTATTCTGATGCATGTTT i dasNov3.JH570378 C 0 C 0 a score=207637.000000 s hg38.chr5_GL383530v1_alt 29538 12 + 101241 GTCATTTATACA s panTro5.chr5 20258290 12 + 181907262 GTCATTTATACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20275586 12 + 183735486 GTCATTTATACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761439 12 - 13748885 GTCATTTATACA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53796606 12 - 163208435 GTCATTTATACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87824766 12 - 180051392 GTCATTTATACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87929180 12 - 181584905 GTCATTTATACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1152090 12 - 8785636 GTCATTTATACA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1620307 12 + 27333823 GTCATTTATACA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1890414 12 - 91010382 GTCATTTATACA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2001430 12 + 5179401 GTCATTTATACA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7707309 12 - 21726897 GTCATTTATACA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112528450 12 + 204313951 GTCATTTATATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44973690 12 + 71252344 GTCATTTATACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338247 12 - 1393929 GTCATTTATATA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1414923 12 - 15889662 GTCATTTATATA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84826022 12 + 108143057 GTCATTTATACA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 580289 12 - 10520994 GTCATTTATACA i proCoq1.NW_012147189v1 C 0 I 17925 s otoGar3.GL873536 1295317 12 - 29863360 GTCATTTATACA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14309615 12 + 91889043 CTCATTTATACG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1226476 12 - 11655695 TTTGTTTTTACA i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76447954 8190 + 120421639 I a score=656220.000000 s hg38.chr5_GL383530v1_alt 29550 47 + 101241 TGGCAGA---GAG---GCTGAAAAAAGTAA----T--------TTC--------TCAATTGAT---AAGTTAAAGA s panTro5.chr5 20258302 47 + 181907262 TGGCAAA---GAG---GCTGAAAAAAGTAA----T--------TTC--------TCAATTGAT---AAGTTAAAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20275598 47 + 183735486 TGGCAAA---GAG---GCTGAAAAAAGTAA----T--------TTC--------TCAATTGAT---AAGTTAAAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761451 47 - 13748885 TGGCAAA---GAG---GCTGAAAAAAGTAA----T--------TTC--------TCAATTGAT---AAGTTAAAGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53796618 47 - 163208435 TGGCAAA---GAG---GCTGAAAAAAGTAA----T--------TTC--------TCAATTGGT---AAATTAAAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87824778 47 - 180051392 TGGCAAA---GAG---GCTGAAAAAAGTAA----T--------TTC--------TCAATTGAT---AAATTAAAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87929192 47 - 181584905 TGGCAAA---GAG---GCTGAAAAAAGTAA----T--------TTC--------TCAATTGAT---AAATTAAAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1152102 47 - 8785636 TGGCAAA---GAG---GCTGAAAAAAGTAA----T--------TTC--------TCAATTGAT---AAATTAAAGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1620319 47 + 27333823 TGGCAAA---GAG---GCTGAAAAAAGTAA----T--------TTC--------TCAATTGAT---AAATTAAAGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1890426 47 - 91010382 TGGCAAA---GAG---GCTGAAAAAAGTAA----T--------TTC--------TCAATTGAT---AAATTAAAGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2001442 47 + 5179401 TGGCAAA---GAG---GCTGAAAAAAGTAA----T--------TTC--------TCAATTGAT---AAATTAAAGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7707321 47 - 21726897 TGGCAAA---GAG---GCTGAAAAAAGTAA----T--------TTA--------TCAATTGAT---AAATTAAAGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112528462 47 + 204313951 TGCCAAA---GAA---GCTGAAAAAAGTAA----T--------TTC--------TCAATTGAT---AAGTTGAAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44973702 47 + 71252344 TGGCAAA---GAA---GCTGGAAAAAGTAA----T--------TTC--------TCAATTGAT---AAGTTAAAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338259 47 - 1393929 TGGCAAA---GAA---GCTGGAAAAAGTAA----T--------TTC--------TCAATTGAT---AAGTTAAAGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1414935 47 - 15889662 TGGCAAA---GAA---GCTGAAAAAGGTAA----T--------TTC--------TCAATTGAT---AAGTTAAAGA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84826034 50 + 108143057 CAGTAAA---GAA---GCTGAAAGAAGTAATGT-T--------TTC--------TCAATTCAT---AAGTTAAAGA i micMur3.chr12 C 0 I 139 s otoGar3.GL873536 1295329 51 - 29863360 CAGCAAA---GAA---GCTGAAAGAAGTAACATGT--------TTC--------TCAACTCGT---AAGTTAGACA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14309627 58 + 91889043 TGGCAAAGATGAA---GTTGAAAGAAGTAA----TTGCATGTCTTC--------TCCATTGAA---AAGTTAAAGA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1226488 61 - 11655695 TGGCAGA---GAGGGAGCTGGGAGAAGTAA----T--------TTCATATCTTTTCAATTTAGTTAAAATTAAAGA i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I a score=816783.000000 s hg38.chr5_GL383530v1_alt 29597 71 + 101241 CTTGTACTTTGCTCTTTGAACACTTGAATTGAGTAGCTGTTCAGGAAGAAA--------ACAAATGA-TTGGGGGTGTTA s panTro5.chr5 20258349 71 + 181907262 CTTGTACTTTGCTCTTTGAACACTTGAATTGAGTAGCTGTTCAGGAAGAAA--------ACAAATGA-TTGGGGGTGTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20275645 71 + 183735486 CTTGTACTTTGCTCTTTGAACACTTGAATTGAGTAGCTGTTCAGGAAGAAA--------ACAAATGA-TTGGGGGTGTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761498 69 - 13748885 CTTGT-CTTTGCTCTTTGAACACTTGAACTGAGTAGCTGTTCAGGAAGAAA--------ACAAATGA-TT-GGGGTGTTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53796665 71 - 163208435 CTTGTACTTTGTTCTTTGAAGACTTGAATTGAGTAGCTGTTCAGGAAGAAA--------ACAAATGA-TTGGGGGTGTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87824825 71 - 180051392 CTTGTACTTTGCTCTTTGAACATTTGAATTGAGTAGCTGTTCAGGAAGAAG--------ACAAATGA-TTGGGGGTGTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87929239 71 - 181584905 CTTGTACTTTGCTCTTTGAACATTTGAATTGAGTAGCTGTTCAGGAAGAAG--------ACAAATGA-TTGGGGGTGTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1152149 71 - 8785636 CTTGTACTTTGCTCTTTGAACATTTGAATTGAGTAGCTGTTCAGGAAGAAG--------ACAAATGA-CTGGGGGTGTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1620366 71 + 27333823 CTTGTACTTTGCTCTTTGAACATTTGAATTGAGTAGCTGTTCAGGAAGAAG--------ACAAATGA-TTGGGGGTGTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1890473 71 - 91010382 CTTGTACTTTGCTCTTTGAACATTTGAATTGAGTAGCTGTTCAGGAAGAAG--------ACAAATGA-TTGGGGGTGTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2001489 71 + 5179401 CTTGTACTTTGCTCTTTGAACATTTGAATTGAGTAGCTGTTCAGGAAGAAG--------ACAAATGA-TTGGGGGTGTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7707368 71 - 21726897 CTTGTACTTTGCTCTTTGAACATTTGAATTGAGTAGCTGTTCAGGAAGAAG--------ACAAATGA-TTGGGGGTGTTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112528509 70 + 204313951 CCTGTA-TTTGCTCTTTGAACATTTGAATTGAGTGGCTGTTCAGGAAGAAG--------ACAAATAA-TTGGGGGTGTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44973749 78 + 71252344 CCTGTA-TTTGCTCTTTGAACATTTGAATTGAGTAGCTGTTCAGGAAGAAACAGCTACTCCAAATGA-TTGGGGGTGTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338306 67 - 1393929 CCAGTA-TTTGCTCTTTGAACATGTGAATTGA---GCTGTTCAGGAAGAAG--------ACAAATGA-TTGGGGGTGTTA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1414982 70 - 15889662 CCTGTA-TTTACTCTTTGAACATTTGAATTGAGTAGCTGTTCAGGAAGAAA--------ACAAATGA-TTGGGGGTGTTA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1295380 69 - 29863360 TCTTCACTGTTCTCTTTGAACATGTGAA-TGAGGAGGTGTTCTGGAAGTGG--------GCACATGA-CT-GAGGTGTTG i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14309685 72 + 91889043 CCTATGTTTTTCTCTTTAAATGTTTGAATAGAGGAGCTGATCAGAAAGAGG--------ACGCTTGACTTAGGGACAGTA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1226549 71 - 11655695 TTGGTATTTTTCTCTTCCGATGTTTGAATGGAGGAAATGCTCAGGAATAGG--------TCACCCAA-ATGGGAATGTTA i dasNov3.JH570378 C 0 I 5137 e micMur3.chr12 84826084 139 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I a score=105887.000000 s hg38.chr5_GL383530v1_alt 29668 8 + 101241 AAGAGGCA s panTro5.chr5 20258420 8 + 181907262 AAGAGGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20275716 8 + 183735486 AAGAGGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761567 8 - 13748885 AAGAGGCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53796736 8 - 163208435 AAGAGGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87824896 8 - 180051392 AAGAGGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87929310 8 - 181584905 AAGAGGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1152220 8 - 8785636 AAGAGGCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1620437 8 + 27333823 AAGAGGCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1890544 8 - 91010382 AAGAGGCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2001560 8 + 5179401 AAGAGGCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7707439 8 - 21726897 AAGAGGCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112528579 8 + 204313951 AAGAGGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44973827 8 + 71252344 AAGAGGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338373 8 - 1393929 AAGAGGCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1415052 8 - 15889662 AAGAGGCA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1295449 8 - 29863360 CAGAGACA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14309757 8 + 91889043 CAGAAGCA i canFam3.chr3 C 0 I 3675 e micMur3.chr12 84826084 139 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1226620 5137 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I a score=32255.000000 s hg38.chr5_GL383530v1_alt 29676 4 + 101241 GCCT s panTro5.chr5 20258428 4 + 181907262 GCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20275724 4 + 183735486 GCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761575 4 - 13748885 GCCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53796744 4 - 163208435 GCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87824904 4 - 180051392 GTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87929318 4 - 181584905 GTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1152228 4 - 8785636 GTCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1620445 4 + 27333823 GTCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1890552 4 - 91010382 GTCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2001568 4 + 5179401 ATCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7707447 4 - 21726897 GTCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112528587 2 + 204313951 G--T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44973835 4 + 71252344 GTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338381 4 - 1393929 GTCT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1415060 4 - 15889662 GTCT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1295457 4 - 29863360 GCCT i otoGar3.GL873536 C 0 I 1208 e canFam3.chr3 14309765 3675 + 91889043 I e micMur3.chr12 84826084 139 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1226620 5137 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I a score=2109652.000000 s hg38.chr5_GL383530v1_alt 29680 249 + 101241 Aggctgggtgtggtggctcatgcttgtaatccccagcactttgggagactgaagcaggaagattgctttagcccatgagttcaagaccagcctgggcaacatagtg-aaaccacatttctat-gaaaaataaaataaaattagctgaatgtggtggtgcattcctatacttccagctactcagggggctgaggtaggaggatcatttgagccctgcaggtcaaggctgcagtgagctgtgatcatgccact s panTro5.chr5 20258432 249 + 181907262 Aggctgggtgtggtggctcatgcttgtaatccccagcactttgggagactgaagcaggaagattgctttagcccatgagttcaagaccagcctgggcaacatagtg-aaaccacatttctac-gaaaaataaaataaaattagctgaatgtggtggtgcattcctatacttccagctactcagggggctgaggtaggaggatcatttgagccctgcaggtcaaggctgcagtgagctgtgatcatgccact i panTro5.chr5 C 0 C 0 s panPan2.chr5 20275728 249 + 183735486 Aggctgggtgtggtggctcatgcttgtaatccccagcactttgggagactgaagcaggaagattgctttagcccatgagttcaagaccagcctgggcaacatagtg-aaaccacatttctac-gaaaaataaaataaaattagctgaatgtggtggtgcattcctatacttccagctactcagggggctgaggtaggaggatcatttgagccctgcaggtcaaggctgcagtgagctgtgatcatgccact i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761579 248 - 13748885 Aggctggctgtggtggctcatgcttgtaatccccagcactttgggagactgaagcaggaagattgctttagcccgtgagttcaagaccagcctgggcaacatagtg-aaaccacatttctac-gaaaaat-aaataaaattagctgaatgtggtggtgcattcctatacttccagctactcagggggctgaggtaggaggatcatttgagccctgcaggtcaaggctgcagtgagctgtgatcatgccact i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53796748 248 - 163208435 Aggctgggtgtggtggctcatgcttgtaatccccagcac-ttgggagactgaagcaggaagactgttttagcccatgagttcaagaccagcctgggcaacatagtg-aaaccacatttctac-aaaaaattaaaaaaaattagctgaatgtggtggtgcattcctatacttccagctactcagggggctgaggtaggaggatcatttgagccctgcaggtcaaggctgcagtgagccgtgatcatgccact i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87824908 230 - 180051392 Aggctggatgcgatggcttatgcttgtaat-cccagcactttgggaggctgaaacaggaagattgctttagcccaggagttcaagaccagcctgggcaacatagtg-aaaccccatttctac---aaaattaaa-aaaatta---------------gcatttccgtacttccagctattcagggggctgaggtgggaggatcatttgagtcctggaagtcaaggcttcagtgagctgtgatcatgtcact i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87929322 230 - 181584905 Aggctggatgcgatggcttatgcttgtaat-cccagcactttgggaggctgaaacaggaagattgctttagcccaggagttcaagaccagcctgggtaacatagtg-aaaccccatttctac---aaaattaaa-aaaatta---------------gcatttccgtacttccagctattcagggggctgaggtgggaggatcatttgagtcctggaagtcaaggcttcagtgagctgtgatcatgtcact i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1152232 230 - 8785636 Aggctggatgcgatggcttatgcttgtaat-cccagcactttgggaggctgaaacaggaagattgctttagcccaggagttcaagaccagcctgggcaacatagtg-aaaccccatttctac---aaaattaaa-aaaatta---------------gcatttccgtacttccagctattcagggggctaaggtgggaggatcatttgagtcctggaagtcaaggcttcagtgagctgtgatcatgtcact i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1620449 240 + 27333823 Aggctggatgcggtggcttatgcttgtaat-cccagcactttgggaggctgaaacaggaagattgctttagcccaggagttcaagaccagcctgggcaacatagtg-aaaccccatttctac---aaaattaaa-aaaattagctg-----ggtggtgcattcccgtacttccagctattcagggggctgaggtgggaggatcatttgagtcctggaagtcaaggcttcagtgagctgtgatcatgtcact i cerAty1.NW_012002401v1 C 0 I 5 s chlSab2.chr4 1890556 240 - 91010382 Aggctggatgcggtggcttatgcttgtaat-cccagcactttgggaggctgaaacaggaggattgctttagcccaggagttcaagaccagcctgggcaacacagtg-aaaccccatttctac---aaaattaaa-aaaattagctg-----ggtggtgcattcccgtacttccaactattcagggggctgaggtgggaggatcatttgagtcctggaagtcaaggcttcagtgagctgtgatcctgtcact i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2001572 240 + 5179401 Aggctggatgcggtggcttatgcttgtaat-cccagcactttgggaggctgaaacaggaagattgctttagcccaggagttcaagaccagcctgggcaacatagtg-aaaccccatttctac---aaaattaaa-aaaattagctg-----ggtggtgcactcccgtacttccagctattcagggggctgaggtgggaggatcatttgagtcctggaagtcaaggcttcagtgagctgtgatcatgtcact i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7707451 243 - 21726897 Aggctgggtacggtggcttatgcttgtaat-cccagcactttgggaggctgaaacaggaagactgctttagcccaggagttcaagaccagcctggacaacatagtg-aaaccccatttctacaaaaaaaattaa-aaaattagctg-----ggtggtgcattcccgtacttccagctattcagggggctgaggtgggaggatcatttgagtcctggaagtcaagacttcagtgagccgtgatcatgtcact i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112528589 225 + 204313951 Aggctaggtgcggtggctcatgcttgtaat-cccagtactttgggaggctgaagcaggaagattacttcagcccaggagttcaagaacagcctgggcaacatagtgaaaa---------------aaaa------taaattagatg----tggtgatgcattcttgtacttccagctactcagggggcttaggtgtgaggatcatttgagccctggaggtcaaggctgcagtgagccatgatcatgccact i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44973839 224 + 71252344 Aggctgggtacggtggcttatgcttgtaat-ctcagtactttgggaggctgaaacaggaagattactttagcccaggagttcaagaacagcctgggcaacatagtg-aaa---------------aaaa------taagttagatg----tggtggtgcattcttgtacttccagctactcagagggctgaggtgtgaggatcatttgagccctggaggtcaaggctgcagtgagccataatcatgccact i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338385 224 - 1393929 Aggctgggtgcggtggctcatggttgtaat-accagttctttgggaggctgaagcaggaagattactttagcccaggagttcaagaacagcctgggcaacatagtg-aaa---------------aaaa------taaattagatg----tggtggtgcattcttgtacttccagctactcacagggctgaggtgtgaggatcatttgagccctggaggtcaaggctgcagtaagccatgatcatgccact i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1415064 224 - 15889662 Aggctgggtgcggtggctcatgcttgtaat-cccagtactttgggaggctgaagcaggaagattactttagaccaggagttcaagaacagtctggacaacatagtg-aaa---------------aaaa------taaattagatg----tggtggtgcattctcgtacttccagttactcagggggctgaggtgtgaggatcatttgagccctggaggtcaaggctgcagtgagccatgatcatgccact i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14309765 3675 + 91889043 I e micMur3.chr12 84826084 139 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1226620 5137 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e otoGar3.GL873536 1295461 1208 - 29863360 I a score=27685.000000 s hg38.chr5_GL383530v1_alt 29929 3 + 101241 gca s panTro5.chr5 20258681 3 + 181907262 gca i panTro5.chr5 C 0 C 0 s panPan2.chr5 20275977 3 + 183735486 gca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761827 3 - 13748885 gca i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53796996 3 - 163208435 gcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87825138 3 - 180051392 gca i rheMac8.chr6 C 0 I 2 s macFas5.chr6 87929552 3 - 181584905 gca i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1152462 3 - 8785636 gca i macNem1.NW_012011400v1 C 0 I 2 s chlSab2.chr4 1890796 3 - 91010382 gca i chlSab2.chr4 C 0 I 2 s manLeu1.NW_012103732v1 2001812 3 + 5179401 gca i manLeu1.NW_012103732v1 C 0 I 2 s colAng1.NW_012115488v1 7707694 3 - 21726897 gca i colAng1.NW_012115488v1 C 0 I 2 s calJac3.chr2 112528814 3 + 204313951 gca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44974063 3 + 71252344 gca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338609 3 - 1393929 gca i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1415288 3 - 15889662 gca i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14309765 3675 + 91889043 I e micMur3.chr12 84826084 139 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1226620 5137 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e otoGar3.GL873536 1295461 1208 - 29863360 I e cerAty1.NW_012002401v1 1620689 5 + 27333823 I a score=5230.000000 s hg38.chr5_GL383530v1_alt 29932 2 + 101241 tt s panTro5.chr5 20258684 2 + 181907262 tt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20275980 2 + 183735486 tt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761830 2 - 13748885 tt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53796999 2 - 163208435 tt i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87929555 2 - 181584905 ct i macFas5.chr6 C 0 C 0 s calJac3.chr2 112528817 2 + 204313951 ct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44974066 2 + 71252344 ct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338612 2 - 1393929 ct i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1415291 2 - 15889662 ct i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14309765 3675 + 91889043 I e micMur3.chr12 84826084 139 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1226620 5137 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e otoGar3.GL873536 1295461 1208 - 29863360 I e colAng1.NW_012115488v1 7707697 2 - 21726897 I e manLeu1.NW_012103732v1 2001815 2 + 5179401 I e chlSab2.chr4 1890799 2 - 91010382 I e cerAty1.NW_012002401v1 1620689 5 + 27333823 I e macNem1.NW_012011400v1 1152465 2 - 8785636 I e rheMac8.chr6 87825141 2 - 180051392 I a score=118227.000000 s hg38.chr5_GL383530v1_alt 29934 53 + 101241 ccagcctgggggacacagtgaaaccctgtctcaaaaaaaaaaaaaaaaaaa---GA s panTro5.chr5 20258686 56 + 181907262 ccagcctgggggacacagtgaaaccctgtctcaaaaaaaaaaaaaaaaaaaaaaGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20275982 50 + 183735486 ccagcctgggggacacagtgaaaccctgtctcaaaaaaaaaaaaagaa------GA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761832 56 - 13748885 ccagcctgggggacacggtgaaaccctgtctcaaaaaaaaaaaaaaaaaaaaaaGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53797001 44 - 163208435 tcagcctgggggacagagtgaaaccctgtctcaaaaaaaaaa------------GA i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 112528819 48 + 204313951 ccagcctgggggacagagagaaaccctgcctcaaaaaaaaagaaaaTG-------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44974068 56 + 71252344 ccagtctgggggacagagagaaatcctgcctcaaaaaaaaaaaaaaaaaaaaaaga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338614 45 - 1393929 ccagcctgggggacagagagaaaccctgcctcaaaaaaaaaaaaT----------- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1415293 52 - 15889662 ccagcctgggggacagagagaaaccctgcctcaaaaaaaagaaaacaaaaaG---- i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14309765 3675 + 91889043 I e micMur3.chr12 84826084 139 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1226620 5137 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e otoGar3.GL873536 1295461 1208 - 29863360 I e colAng1.NW_012115488v1 7707697 2 - 21726897 I e manLeu1.NW_012103732v1 2001815 2 + 5179401 I e chlSab2.chr4 1890799 2 - 91010382 I e cerAty1.NW_012002401v1 1620689 5 + 27333823 I e macNem1.NW_012011400v1 1152465 2 - 8785636 I e macFas5.chr6 87929557 0 - 181584905 C e rheMac8.chr6 87825141 2 - 180051392 I a score=65599.000000 s hg38.chr5_GL383530v1_alt 29987 29 + 101241 CAG------TCTGTGTGCACCTAAAATATTG----------TTGA s panTro5.chr5 20258742 29 + 181907262 CAG------TCTCTGTGCACCTAAAATATTG----------TTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20276032 29 + 183735486 CAG------TCTGTGTGCACCTAAAATATTG----------TTGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761888 29 - 13748885 CAG------TCTGTGTGCACCTAAAATATTG----------TTGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53797045 29 - 163208435 CAA------TCTGTGTGCACCTAAAATATTG----------TTGA i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 112528867 33 + 204313951 ---------TCTGTGTTCACCTAAAATATTGTT---GACTATTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44974124 42 + 71252344 aaaaaaaaTTCTGTGTTCACTTAAAATATTGTT---GACTATTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338659 33 - 1393929 ---------TTTATGTTCACCTAAAATATTGTT---GACTGTTGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1415345 33 - 15889662 ---------TCTGTGTTCACCTAAAATATTGTT---GACTATTGA i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14313440 39 + 91889043 CAA------TCCATGCACACCTGAAATTGTGCTTAGGGTCATCGA i canFam3.chr3 I 3675 C 0 e micMur3.chr12 84826084 139 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1226620 5137 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e otoGar3.GL873536 1295461 1208 - 29863360 I e colAng1.NW_012115488v1 7707697 2 - 21726897 I e manLeu1.NW_012103732v1 2001815 2 + 5179401 I e chlSab2.chr4 1890799 2 - 91010382 I e cerAty1.NW_012002401v1 1620689 5 + 27333823 I e macNem1.NW_012011400v1 1152465 2 - 8785636 I e macFas5.chr6 87929557 0 - 181584905 C e rheMac8.chr6 87825141 2 - 180051392 I a score=14435.000000 s hg38.chr5_GL383530v1_alt 30016 4 + 101241 CTAT s panTro5.chr5 20258771 4 + 181907262 CTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20276061 4 + 183735486 CTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761917 4 - 13748885 CTAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53797074 4 - 163208435 CTAT i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 112528900 4 + 204313951 CTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44974166 4 + 71252344 CTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338692 4 - 1393929 CTAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1415378 4 - 15889662 CTAT i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14313479 4 + 91889043 CTTC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1231757 4 - 11655695 CTCC i dasNov3.JH570378 I 5137 C 0 e micMur3.chr12 84826084 139 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I e otoGar3.GL873536 1295461 1208 - 29863360 I e colAng1.NW_012115488v1 7707697 2 - 21726897 I e manLeu1.NW_012103732v1 2001815 2 + 5179401 I e chlSab2.chr4 1890799 2 - 91010382 I e cerAty1.NW_012002401v1 1620689 5 + 27333823 I e macNem1.NW_012011400v1 1152465 2 - 8785636 I e macFas5.chr6 87929557 0 - 181584905 C e rheMac8.chr6 87825141 2 - 180051392 I a score=22964.000000 s hg38.chr5_GL383530v1_alt 30020 8 + 101241 CTTAGTCA s panTro5.chr5 20258775 8 + 181907262 CTTAGTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20276065 8 + 183735486 CTTAGTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761921 8 - 13748885 CTCAGTCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53797078 8 - 163208435 CTCAGTCA i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 112528904 8 + 204313951 CCCTGTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44974170 8 + 71252344 CCCAGTTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338696 8 - 1393929 CCCGGTTG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1415382 8 - 15889662 CCTGGTTG i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1296669 8 - 29863360 CTCAGTTG i otoGar3.GL873536 I 1208 C 0 s canFam3.chr3 14313483 8 + 91889043 CTTGGTTG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1231761 8 - 11655695 TTTGACTG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84826084 139 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I e colAng1.NW_012115488v1 7707697 2 - 21726897 I e manLeu1.NW_012103732v1 2001815 2 + 5179401 I e chlSab2.chr4 1890799 2 - 91010382 I e cerAty1.NW_012002401v1 1620689 5 + 27333823 I e macNem1.NW_012011400v1 1152465 2 - 8785636 I e macFas5.chr6 87929557 0 - 181584905 C e rheMac8.chr6 87825141 2 - 180051392 I a score=242872.000000 s hg38.chr5_GL383530v1_alt 30028 43 + 101241 GTTTCATGACAGTTGTTTAAATGCAGAGAAATTGGATGGTGGA s panTro5.chr5 20258783 43 + 181907262 GTTTCATGACAGTTGTTTAAATGCAGAGAAATTGGATGGTGGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20276073 43 + 183735486 GTTTCATGACAGTTGTTTAAATGCAGAGAAATTGGATGGTGGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761929 43 - 13748885 GTTTCATGACAGTTGTTTAAATGCAGAGAAATTGGATGGTGGG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53797086 43 - 163208435 GTTTCATGACAGTTGTTTAAATGCAGAGAAATTGGATGGTGGA i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 112528912 43 + 204313951 GTTTCATGACAGTTGTTTAAATGCAGAGAAATTGGATGGTGGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44974178 43 + 71252344 GTTTTATGACAGTTGTTTAAATGCAGAGAAAGTGGATGGTGGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338704 43 - 1393929 GTTTCATGACAGTTGTTTAAATGCAGAGAAATTGGATGGTGGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1415390 43 - 15889662 GTTTCATGACAGTTGTTTAAATGCAGAGAAATTGGATGGTAGA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84826223 43 + 108143057 GTTTCATGACAGTTGTTAAAATATAGGGAAATTGGACTGTGGC i micMur3.chr12 I 139 C 0 s otoGar3.GL873536 1296677 43 - 29863360 GTTTCATGACGGTTTTTAAAATACAGAGAGACTGGACTATGGC i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14313491 41 + 91889043 GTTTA--GACAGTTGTTTAATTGCAGAGAAATTGGACTGTGGA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1231769 41 - 11655695 GTTTCATGACCA--GTTTAAATGCAGAGAAATTCAACTGGGGA i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I e colAng1.NW_012115488v1 7707697 2 - 21726897 I e manLeu1.NW_012103732v1 2001815 2 + 5179401 I e chlSab2.chr4 1890799 2 - 91010382 I e cerAty1.NW_012002401v1 1620689 5 + 27333823 I e macNem1.NW_012011400v1 1152465 2 - 8785636 I e macFas5.chr6 87929557 0 - 181584905 C e rheMac8.chr6 87825141 2 - 180051392 I a score=1601086.000000 s hg38.chr5_GL383530v1_alt 30071 118 + 101241 CTGATTCTTTGGGATGTGTTAGAGTACTATGCAATATTTGCTAACA----------TTAAATGTAAATATCCCCTTAGATATTGACAAGGCACGAATGAATCTTGGAATTTCTTTTGG-TTTTATCAGG s panTro5.chr5 20258826 118 + 181907262 CTGATTCTTTGGGATGCGTTAGAGTACTATGCAATATTTGCTAACA----------TTAAATGTAAATATCCCCTTAGATATTGACAAGGCACGAATGAATCTTGGAATTTCTTTTGG-TTTTATCAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20276116 118 + 183735486 CTGATTCTTTGGGATGCGTTAGAGTACTATGCAATATTTGCTAACA----------TTAAATGTAAATATCCCCTTAGATATTGACAAGGCACGAATGAATCTTGGAATTTCTTTTGG-TTTTATCAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4761972 118 - 13748885 CTGATTCTTTGGGATGCGTTAGAGTACTATGCAATATTTGCTAACA----------TTAAATGTAAATATCCCCTTAGATATTGACAAGGCACTAATGAATCCTGGAATTTCTTTTGG-TTTTATCAGG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53797129 118 - 163208435 CTGATTCTTTGGGATGCTTTAGAGTACTGTGCAATATTTGCTAACA----------TTAAATGTAAATATCCCCTTAGATATTGACAAGGCATGAATGAATCTTGGAATTTCTTTTGG-TTTTATCAGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87825143 118 - 180051392 cTGATTCTTTGGGATGCTTTAGAGCACTATGCAATATTTGCTAATA----------TTAAATATAAATATCTCCTTAGATACTGACAAGGCAAGAATGAATCTTGGAATTTCTTTTGG-TTTTATCAGG i rheMac8.chr6 I 2 C 0 s macFas5.chr6 87929557 118 - 181584905 cTGATTCTTTGGGATGCTTTAGAGTACTATGTAATATTTGCTAATA----------TTAAATATAAATATCTCCTTAGATACTGACAAGGCAAGAATGAATCTTGGAATTTCTTTTGG-TTTTATCAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1152467 118 - 8785636 cTGATTCTTTGGGATGCTTTAGAGTACTATGTAATATTTGCTAATA----------TTAAATATAAATATCTCCTTAGATACTGACAAGGCAAGAATGAATCTTGGAATTTCTTTTGG-TTTTATCAGG i macNem1.NW_012011400v1 I 2 C 0 s cerAty1.NW_012002401v1 1620694 118 + 27333823 cTGATTCTTTGGGATGCTTTAGAGTACTATGTAATATTTGCTAATA----------TTAAATATAAATATCCCCTTAGATACTGACAAGGCAAGAATGAATCTTGGAATTTCTTTTGA-TTTTATCAGG i cerAty1.NW_012002401v1 I 5 C 0 s chlSab2.chr4 1890801 118 - 91010382 cTGATTCTTTGGGATGCTTTAGAGTACTATGTAATATTTGCTAATA----------TTAAATATAAATATCCTCTTAGATACTGACAAGGCAAGAATGAATCTTGGAATTTCTTTTGG-TTTTATCAGG i chlSab2.chr4 I 2 C 0 s manLeu1.NW_012103732v1 2001817 118 + 5179401 cTGATTCTTTGGGATGCTTTAGAGTACTATGTAATATTTGCTAATA----------TTAAATATAAATATCCCCTTAGATACTGACAAGTCAAGAATGAATCTTGGAATTTCTTTTGA-TTTTATCAGG i manLeu1.NW_012103732v1 I 2 C 0 s colAng1.NW_012115488v1 7707699 118 - 21726897 cTGATTCTTTGGGATGCTTTAGAGTATTATGTGATATTTGCTAATA----------TTAAATATAAATATCCCCTTAGATATTGACAAGGCAAGAATGAATCTTGGAATTTCTTTTGG-TTTTATCAGG i colAng1.NW_012115488v1 I 2 C 0 s calJac3.chr2 112528955 119 + 204313951 CTGATTCTTTGTGATGCTGTAGAGTGCTATGCAATATTTGCTAATA----------TTAAATGTAAATATCCCCTTAGATATTGACAAAGTAAGAATGAATCTTGGGATTTCTTTTGGTTTTTATCAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44974221 119 + 71252344 CTGATTCTTTGTGATGCTTTAGAGTACTATGTAATATTTGCTAATA----------TTAGATGTAAATATCCCCTTAGATATTGACATAATAATAATGAATCTTGGAATTTCTTTTGTTTTTTATCAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338747 119 - 1393929 CTGACTCTTTGTGATGCTTTAGAGTACTATGCAATATTTGCTAATA----------TTAAATGTAAATATCCCCTTAGATATTGACAAAGTAAGAATGAATCTTGGAATTTCTTTTGGTTTTTATCAGG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1415433 119 - 15889662 CTGATTCTTTGTGATGCTTTAGAGTACTATGCAATATTTGCTAATA----------TGAAATGTAAATATCCCCTTAGATATTGACAAAGTAAGAATGAATCTTGGAATTTCTTTTGGTTTTTATGAGG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84826266 119 + 108143057 CTGATTTTTTAGAATGCTTTTGAGTGCTGTGCATTATTTGCTTATA---------GTCGAATCTAAGTATCCCTATAGATATTGATAAGACAAAAATGAATCTTGGAAGTTCTTTTGG-TTTTATCAGG i micMur3.chr12 C 0 I 213 s otoGar3.GL873536 1296720 118 - 29863360 CTGATGTTGTACAATATCTTTGAGTACTTTGCATTATTTGCTTATA---------GTTTAATCTAAATATCCCTATAGATAGTGACAAGAC-AAAGTGCATCTGGGAAGTTCTCTTGG-TTTTATCAGG i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14313532 116 + 91889043 CCTATTCTTTG-GATGCCT--GAGTGCTGTGCATTATTTACTAATA---------GCCAAATCTAAATATCCCCATAGGAGTTGATAAGGCAAGAGTGAGTCTTGAAAATTCTTTTGG-TTTTATTAGG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1231810 127 - 11655695 CTGATTCTTTAGGATGCTTCAGGACATGATGCTCTGTTTGCTAATAGTAAATCCAGTAGAATCTAAATATCCCCATAAATGTTGATAAGGCAAGAATG-ATCTTGGAAGTTCTTTTGG-TTTTATCAAA i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I a score=2604653.000000 s hg38.chr5_GL383530v1_alt 30189 232 + 101241 CCCAACAGATGAAGGTGTGTAGAAGACTAATTCCCATCTCTGTGGGTATATAAGAAGCTGCTGCATATCCTAGAAACCTTATTCCAGGCAGTGATGGC-TACCTCCCTTCAGGCCTGCCCAG-TACTCAGTTATTCCAGGGCCCACTGTGATT-GTGGAGTGAAATTCCGT-AACATGCCCTTTATGGCAGTTG------ACA------CCAC--CAGAGCCATTGCATTTCCATTGTTGCTAGGGATTG s panTro5.chr5 20258944 232 + 181907262 CCCAACAGATGAAGGTGTGTAGAAGACTAATTCCCATCTCTGTGGGTATATAAGAAGCTGCTGCATATCCTAGAAACCTTATTCCAGGCAGTGATGGC-TACCTGCCTTCAGGCCTGCCCAG-TACTCAGTTATTCCAGGGCCCACTGTGATT-GTGGAGTGAAATTCCGT-AACATGCCCTTTATGgcagttg------aca------ccac--cagagccattgcatttccattgttgctagggattg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20276234 232 + 183735486 CCCAACAGATGAAGGTGTGTAGAAGACTAATTCCCATCTCTGTGGGTATATAAGAAGCTGCTGCATATCCTAGAAACCTTATTCCAGGCAGTGATGGC-TACCTGCCTTCAGGCCTGCCCAG-TACTCAGTTATTCCAGGGCCCACTGTGATT-GTGGAGTGAAATTCCGT-AACATGCCCTTTATGGCAGTTG------ACA------CCAc--cagagccattgcatttccattgttgctagggattg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4762090 232 - 13748885 CCCAACAGATGAAGGTGTGTAGAAGACTAATTCCCATCTCTGTGGGTATATAAGAAGCTGCTGCATATCCTAGAAACCTTATTCCAGGCAGTGATGGC-TACCTCCCTTCAGGCCTGCTCAG-TACTCAGTTATTCCAGGGCCCACTGTGATT-GCGGAGTGAAATTCCGT-AACATGCCCTTTATGgcagttg------aca------ccac--cagagccattgcatttccattgttgctagggattg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53797247 231 - 163208435 CCC-ACAGATGAAGGTGTGTAGAAGACTAATTCCCATCTCTGTGAGTATATAAGAAGCTGCTGCATATCCTAGAAACCTTATTCCAGGCAGTGATGGC-TACCTCCCTTCAGGCCTGCCCAG-TACTCAGTTATTCCAGGGCACACGGTGATT-GTGGAGTGAAATTCCGT-AACATGTTCTTTATGGCAGCTG------ACA------CCAC--CAGAGCCATTGCATTTCCCTTGTTGCTAGGGATTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87825261 233 - 180051392 CCCAACAGATGAAGGTGTGTAGAAGACTAATTCCCATCTCTAAGGGCATATAAGAAGCTGCTGCATATCCTAGAAACCCTATTCCAGGCAGTGATGGCATACCTCCCTTCAGGCCTGCCCAG-TGCCCCGTTATTCCAGGGCCCACTGTGATT-GTGGAGTGAAATTCTGT-AACATGCTCTTTATGGCAACTG------GCA------CCAc--cagagccattgcatttcccatgttgctagggattg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87929675 233 - 181584905 CCCAACAGATGAAGGTGTGTAGAAGACTAATTCCCATCTCTAAGGGCATATAAGAAGCTGCTGCATATCCTAGAAACCCTATTCCAGGCAGTGATGGCATACCTCCCTTCAGGCCTGCCCAG-TGCCCAGTTATTCCAGGGCCCACTGTGATT-GTGGAGTGAAATTCCGT-AACATGCTCTTTATGGCAACTG------GCA------CCAc--cagagccattgcatttcccatgttgctagggattg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1152585 233 - 8785636 CCCAACAGATGAAGGTGTGTAGAAGACTAATTCCCATCTCTAAGGTCATATAAGAAGCTGCTGCATATCCTAGAAACCCTATTCCAGGCAGTGATGGCATACCTCCCTTCAGGCCTGCCCAG-TGCCCAGTTATTCCAGGGCACACTGTGATT-GTGGAGTGAAATTCCGT-AACATGCTCTTTATGGCAACTG------GCA------CCAc--cagagccattgcatttcccatgttgctagggattg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1620812 233 + 27333823 CCCAACAGATGAAGGTGTGTAGAAGACTAATTCCCATCTCTAAGGGTATATAAGAAGCTGCTGCATATCCTAGAAACCCTATCCCAGGCAGTGATGGCATACCTCTCTTCAGGCCTGCCCAG-TACCCAGTTATTCCAGGGCCCACTGTGATT-GTGGAGTGAAATTCCGT-AACATGCTCTTTATGGCAGCTG------GCA------CCAc--cagagccgttgcatttcccatgttgctaaggactg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1890919 233 - 91010382 CCCAACAGATGAAGGTGTGTAGAAGACTAATTCCCATCTCTAAGGGTATATAAGAAGCTGCTGCATATCCTAGAAACCCTATTCCAGGCAGTGATGGAATACTTCCCTTCAGGCCTGCCCAG-TACCCAGTTATTCCAGGGCCCACTGTGATT-GTGGAGTGAAATTCTGT-AACATGCTCTTTATGGCAGCTG------GCA------CCAc--cagagccactgcatttcccatgttgctagggattg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2001935 233 + 5179401 CCCAACAGATGAAGGTGTGTAGAAGACTAATTCCCATCTCTAAGGGTATATAAGAAGCTGCTGCATATCCTAGAAACCCTATTCCAGGCAGTGATGGCATACCTCCCTTCAGGCCTGCCCAG-TACCCAGTTATTCCAGGGCCCACTGTGATT-GTGGAGTGAAATTCCGT-AACATGCTCTTTATGGCAGCTG------GCA------CCAc--cagagccgttgcatttcccatgttgctagggattg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7707817 233 - 21726897 CCCAACAGTTGAAGGTGTGTAGAAGACTAATTCCCATCTCTAAGGGTATATAAGAAGCTGCTGCATATCCTAGAAACCCTATTCCAGGCAGTGATGGTGTGCCTCCCTTCAGGCCTGCCCAG-TACCCAGTTATTCCAGGGCCCGCTGTGATT-GTGGAGTGAAATTCCGT-GACATGCTCTTTATGGCAACTG------GCA------CCAc--cagagccattgcatttcccatgttgctagggattg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112529074 233 + 204313951 CCCAACAGATAAAGGTATGTAGAAGACTAATTTCCAACTCTGTGGGTATGTAAGAAGCCGCTGCATATCCTAGAAACCTGATTTCAGGCAGTGGTGGCATACCTCCCTTCATCCCTGCTCAG-TACTCAGTTATTCTAGGGCCCACTGTGATT-GTAGAGCGAAATTCCAT-AACATGTTCTTTAGGGCAGCTG------ACA------CTAC--CAGAGCCATTGCGTTTCCCATGTTGCTACGGATCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44974340 232 + 71252344 CCCAACAGATAAAGGTATGTAAAAGACTAATTTCCAACTCTGTGGGTATATAAGAAGCTGCTGCATATCCCAGATACCTTATTTCAGGCAGTGATGGCATACCTCCCTTCAGGCCTGCTCAG-TACTCAGTTTTTCTAGGGCCCACTGTGATT-GTAGAGTGAAATTCCAT-AACATGCTC-TTACGGCAGCTG------ACA------CCAC--CAGAGCCATTGCGTTTCCCATGTTGCTAGGGATCG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 338866 231 - 1393929 CCCGACAGATAAAGGTGTATAGAAGACTAATTTCCAATTCTGTGGCTATATAAGAAGCTGCTGCATATCCTAGAAACCTTATTTCAGGCAGTGATGGCATACCTCCCTTCAGGCCTGCTCAG-TACT--GTTTTTCTAGGGCCCACTGTGATT-GTAGAGTGAAATTCCAT-AACATGCTCTTTAGGGCAGCTG------ACA------CCAc--cagagccattgcgtttcccatgttgctagggatcg i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1415552 233 - 15889662 CCCAACAGATAAAGGTGTGTAGAAGACTAATTTCCAACTCTGTGGGTATATAAGAAGCCACTGCATATCCTAGAAACCTTATTTCAGGCAGTGATGGCATACCTCCCTTCAGGCCTGCTCAG-TACTCAGTTATTCTAGGGCCCATTGTGATT-GTAGAGTGAAATTCCAT-AACATGCTCTTTAGGGCAGCTG------ACA------CCAc--cagagccattgcgtttcccatgttgctagggatcg i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1296838 195 - 29863360 -CTGACAGAGGAAGCCATCTAGGAG---AATTCCC-------------------------CAGTGTGACATGGAAACCTTATTCCAGGCAGCAATTGCTCACCCCACTGCAGGCCCACAGAT-TACTCAGTTATTCTGTGGCCC-CCGTGATT-GTGGAGTAGAATTCTATCCACCTG-----------GGCTG------GCG------CCCCAGCAGAGCTGTTGCGTTTCCCGTGTTGCTAAGGACCA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14313648 209 + 91889043 -----------AAGATGTCTACAAAACTATTTCCCATCCCTGCAGG-GTTTGAAGGGATGCTGTGCA-CATAGAAACCTTATTCCAGGCAGCAAAGGCTCACTTGTGTTCAGGCCTAC----------AGTAACTT--GGTTCCAC------T-GGAGAATAAAATTTCAG-AACATGCTCTTTACAGTGGTTG------ACGATTACTTCAC--CAGACCCATTGCATTTCTCGTGTTGCTAAAAATCA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1231937 206 - 11655695 -CCAGTAGAGAAATACATTGAAAAGACTAATTCCCCTCTCAGAGGG-GCGTGAGGAGCTGCTG----------------------GGGCCTTGATG----------CTTCAGCCCTGAAGAGTTACGCTATTATTTTGGGACCCACTGTGATTGGCAGAATAAAATTCCAT-AATTTCCCCTTTG-GGCAGTTGCTGCCTACT------CTCC--CAGAGCTGCGGCATTTCCCATGTGGCTGTGGATCA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84826385 213 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I a score=3273642.000000 s hg38.chr5_GL383530v1_alt 30421 238 + 101241 GAGTTTCCCCTATTTGTACTGTATTTCCCAAAGTTGGCATGGGGTTTCCTGTT-----ATTTAAGTACATTTCTTAGAAATGTTTTTCAAATAGCCTCATTGTTTACTATGAAAATAGTCTAGAAAAACAG-AAAATGTTTCTATTTGAGCTGATCATAAA-TG-TTTGGTATGACCTTC-TT--AAAAAACACACAGATAAACA-GTTGTAGGGACAATTCAGGTCACAGCTTAAAGACTTCA-------------------------------------GAAGTA---- s panTro5.chr5 20259176 238 + 181907262 gagtttcccctatttgtactgtatttcccaaagttggcatggggtttcctgtt-----atttaagtacatttcttagaaatgtttttcaaatagcctcattgtttactatgaaaatagtctagaaaaacag-aaaatgtttctatttgagctgatcataaa-tg-tttggtatgaccttc-tt--aaaaaacacacagataaaca-gttgtagggacaattcaggtcacagcttaaagacttca-------------------------------------gaagta---- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20276466 238 + 183735486 gagtttcccctatctgtactgtatttcccaaagttggcatggggtttcctgtt-----atttaagtacatttcttagaaatgtttttcaaatagcctcattgtttactatgaaaatagtctagaaaaacag-aaaatgtttctatttgagctgatcataaa-tg-tttggtatgaccttc-tt--aaaaaacacacagataaaca-gttgtagggacaattcaggtcacagcttaaagacttca-------------------------------------gaagta---- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4762322 238 - 13748885 gagtttcccctatttgtactgtatttcccaaagttggcatggggtttcctgtt-----atttaagtacatttcttagaaatgtttttcaaatagcctcattgtttactatgaaaatagtctagaaaaacag--aaatgtttctatttgagctgatcataaa-tgttttggtatgaccttc-tt--aaaaaacacacagataaaca-gttgtagggacaattcaggtcacagcttaaagacttca-------------------------------------gaagta---- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53797478 238 - 163208435 GAGTTTCCCCTATTTGTACTGTATTTCCCAAAGTTGGCATGGGGTTTCCTGTT-----ATTTAAGTACATTTCTTAGAAATGTTTTTCAAATAGCCTCATTGTTTACTATGAAAATAGTCTAGAAAAACAG-AAAATGTTTCTATTTGAGCTGATCATAAA-TG-TTTGGTATGACCTTC-TT--AAAAAACACACAGATAAACA-GTTTTAGGCACAATTCAGGTCACAGCTTAAAGACTTCA-------------------------------------GAAGTA---- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87825494 233 - 180051392 gagtttcccctatttgtactgtatttcccaaagttggcatgggatttcctgtt-----atttaagtacatttcttagaaatgtttttcaaatagcctcattgtttactatgaaaatagtctagaaaaacag-aaaatgtttctatttgagctgatcgtaaa-tg-tttggtatgaccttc-tt--aaaaaacatacagataaaca-gttttaggcacaat-----tcatggcttaaagacttca-------------------------------------gaagta---- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87929908 233 - 181584905 gagtttcccctatttgtactgtatttcccaaagttggcatgggatttcctgtt-----atttaagtacatttcttagaaatgtttttcaaatagcctcattgtttactatgaAAATAGTCTAGAAAAACAG-AAAATGTTTCTATTTGAGCTGATCGTAAA-TG-TTTGGTATGACCTTC-TT--AAAAAACGTACAGATAAACA-GTTTTAGGCACAAT-----TCATGGCTTAAAGACTTCA-------------------------------------GAAGTA---- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1152818 233 - 8785636 gagtttcccctatttgtactgtatttcccaaagttggcatgggatttcctgtt-----atttaagtacatttcttagaaatgtttttcaaatagcctcattgtttactatgaaaatagtctagaaaaacag-aaaatgtttctatttgagctgatcgtaaa-tg-tttggtatgaccttc-tt--aaaaaacatacagataaaca-gttttaggcacaat-----tcatggcttaaagacttca-------------------------------------gaagta---- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1621045 238 + 27333823 gagtttcccctatttgtactgtatttcccaaagttggcatggaatttcctgtt-----atttaagtacatttcttagaaatgtttttcaaatagcctcattgtttactatgaaaacagtctagaaaaacag-aaaatgtttctatttgagctgatcgtaaa-ag-tttggtatcaccttc-tt--aaaaaacatatagataaaca-gttttaggcacaattcaggtcacggcttaaagacttca-------------------------------------gaagta---- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1891152 233 - 91010382 gagtttcccctatttgtactgtatttcccaaagttggcatggggtttcctgtt-----atttaagtacatttcttagaaatgtttttcaaatagcctcattgtttactatgaAAATAGTCAAGAAAAACAG-AAAATGTTTCTATTTGAGCTGATCGTAAA-TG-TTTGGTATGACCTTC-TT--AAAAAACATACAGATAAACA-GTTTTAGGCACAAT-----TCATGGCTTAAAGACTTCA-------------------------------------GAAGTA---- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2002168 238 + 5179401 gagtttcccctatttgtactgtatttcccaaagttggcatgggatttcctgtt-----atttaagtacatttcttagaaatgtttttcaaatagcctcattgtttactatgaaagcagtctagaaaaacag-aaaatgtttctatttgagctgatcgtaaa-ag-tttggtatcaccttc-tt--aaaaaacatacagataaaca-gttttaggcacaattcaggtcacggcttaaagacttca-------------------------------------gaagta---- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7708050 239 - 21726897 gagtttcccctatttgtattgtatttcccaaagttggcatggggtttcctgtt-----atttaagtacatttcttagaaatgtttttcaaatagcctcattgtttactataaaaatagtctagaaaaacag-aaaatgtttctatttgagctgatcataaa-tg-ttttgtatcaccttcttt--aaaaaacatacagataaaca-gttttaggcatgattcaggtcatggcttaaagacttca-------------------------------------gaagta---- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112529307 237 + 204313951 GAATTTCCCCTGTTTGTACTGTGTTTCCCAAAGTTGGCATGGGTTTTCCTGTT-----ATTTAAGCACATTTCTTAGAAATGTTATTCAAATAGCCTCATTGTTTACTGTGAAAGTAGTCTAGAAAAACAG-AAAATGTTT-TATTCAAGCTGATCATAAA-TG-TTTGATATGCCCTTC-TT--AAAAAACACACAAATAAACA-GTTTTAGGCACAATTCAGGTCATGGCTTGAAGACTTCA-------------------------------------GCAGTA---- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44974572 240 + 71252344 GAGTTTCCCCTGTTTGTACTGTATTTCCCAAAGTTGGCATGGGGTTTCCTGTT-----ATTTAAGCACATTTCTTAGAAATGTTATTCAAATAGCCTCATTGTTTACTATGAAAATAGTCAAGAGAAACAG-AAAATGTTTCTATTCAAGCCGATCATAAA-TG-TTTGATATGGCCTTC-TTAAAAAAAACACACAGATAAACA-GTTTTAGGCACAATTCAGGTCACGGCTTGAAGACTTCA-------------------------------------GAAGTA---- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 339097 238 - 1393929 gagtttcccctgtttgtactgtatttcccaaagttggcatggggtttcctgtt-----atttaagcacatttcttagaaatgttattcaaatagcctcattctttactatgaaaatagtctagaaaaacag-aaaatgtttctattcaagctgatcataaa-tg-tttgatatgaccgtc-tt--aaaaaacacacagataaaca-gttttaggcacaattcaggtcacagcttgaagacttca-------------------------------------gaagta---- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1415785 238 - 15889662 gagtttcccctgtttgtactgtatttcccaaagttggcatggggtttcctgtt-----atttaagcacatttcttagaaatgttattcaaatagcctcattgtttactatgaaaatagtctagaaaaacag-aaaatgtttctattcaagctgatcataaa-tg-tttgatatgaccttc-tt--aaaaaacacacagataaaca-gttttaggcacaattcaggtcacggcttgaagacttca-------------------------------------gaagta---- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84826598 236 + 108143057 GAGTTTCCCCCGTTtgtactgtattctccaaagttggcatggggtttcctgtt-----acttaggtacatttcttataaatggtttttaaatagtcttatgggttactatgaaaagaatctagaaagacagaaaaatgtctctattcaagctgatcatata-tg-tttgatatgacc----tt--aaaaaacacatagataaaca-gtttcaggcacaatataagtcatgacttagagacttta-------------------------------------gaagtg---- i micMur3.chr12 I 213 C 0 s otoGar3.GL873536 1297033 270 - 29863360 GAATTTCCCCTGTTTGTGCAGTGTT-TCCAAAGCTGGCGT--GGTTTCCTGTTATCACATTTAGTTACCTTTCTTATAAATGTTTTTCAGATAGCCTCA----TTACTATGAAAATAACCTAGAAAAGTAG-AAAATGTTTCTATTCAAGCTGATCATACA-TG-TTTGGTATGACC----TT--AAAAAACACACAGATAAATA-GTTTCAGGCACGATATAAGTCATGGCTTAGAGTCTTTATTTTGTGTGTGTGTATTTTTAAATTCAGAATATTATGGAGGTA---- i otoGar3.GL873536 C 0 I 125 s canFam3.chr3 14313857 237 + 91889043 GAATTTCCTTTATTTGTGCTGTGTTTCCCAGAGTTTACACATGATTTCCTGCT-----ATTTAGATACATTTCTTAGAAATGTT-TTCAAATAGCCTCATTGTTTATTATGAAAAAGACCTAGAAAAACAGAAAAACATTTCTGTTCAAGCTGATCATAAACCA-TTTGGTATGATC----TT--TAAAAACACGCAGATGAACAGGTTTTAGGCAGAGTATGGGGAATGACTTAGAGACTTTA-------------------------------------AAAATG---- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1232143 231 - 11655695 GAGTTTCCCCTGTTTATCTTGTACTT-CCAAAGACTGCATGGG-TTTCCTGCT-----ATTTAGGTAGATTTCTTCGAAATGTACTTCAAATAGCCTCATGGTTTATGATGACTACAGCCTAGATA------AAAATATTTCTATTTAAGCTAATTATAAA-TG-CTTGGTATGATT----TT--TAGAAGCGCACAGACGCA-A-TTTTTAGGCAAAGTACAGCTCATGGTGTAGGGACTTTA-------------------------------------ATTAAAGGCC i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I a score=2880716.000000 s hg38.chr5_GL383530v1_alt 30659 234 + 101241 ACTTTTAGACTGAGGCTCAAGTTAACATTGAAGAGGGAACTGTAATCCTCT-CTGTTAGACCC-AAGGAAAATCCCTTCTGAATGTTGCAGTGT-----TTGGTGTTCCTTCCCTTTGAGTCCGCTAGTTATT-----------TTTTTCCAAATTTAGATTTTCTATTATTGCCATAA----TTTTTCCAGTTTCAAGAAATATACAAAAGAGA-----CTTGTGGAGTTATTGTTAGTAATTAAATAATAATGATTAAC s panTro5.chr5 20259414 234 + 181907262 acttttagactgaggctcaagttaacattgaagagggaactgtaatCCTCT-CTGTTAGACCC-AAGGAAAATCCCTTCTGAATGTTGCAGTGT-----TTGGTGTTCCTTCCCTTTGAGTCCGCTAGTTATT-----------TTTTTCCAAATTTAGATTTTCTATTATTGCCATAA----TTTTTCCAGTTTCAAGAAATATACAAAAGAGA-----CTTGTGGAGTTATTGTTAGTAATTAAATAATAATGATTAAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20276704 234 + 183735486 acttttagactgaggctcaagttaacattgaagagggaactgtaatCCTCT-CTGTTAGACCC-AAGGAAAATCCCTTCTGAATGTTGCAGTGT-----TTGGTGTTCCTTCCCTTTGAGTCCGCTAGTTATT-----------TTTTTCCAAATTTAGATTTTCTATTATTGCCATAA----TTTTTCCAGTTTCAAGAAACATACAAAAGAGA-----CTTGTGGAGTTATTGTTAGTAATTAAATAATAATGATTAAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4762560 233 - 13748885 acttttagactgaggctcaagttaacactgaagagggaactgtaatCCTCT-CTGTTAGACCC-AAGGAAAATCCCTTCTGAATGTTGCAGTGT-----TTGGTGTTCCTTCCCTTTGAGTCCGCTAGTTATT-----------TTTTTCCAAATTTAGATTTTCTATTATTG-CATAA----TTTTTCCAGTTTCAAGAAATATACAAAAGAGA-----CTTATGGAGTTATTGTTAGTAATTAAATAATAATGATTAAC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53797716 234 - 163208435 GCTTTTAGACCGAGGCTCAAGTTAACATTGAAGAGGGAACTGTAATCCTCT-CGGTTAGACCC-AAGGAAAATCCCTTCTGAATTTTGCAGTGT-----TTGGTGTTCCTTCCCTTTGAGTCTGCTAGTTATT-----------TTTTTCTGAATTTAGATTTTCTATTATTGCAATAA----TTTTTCCAGTTTCAAGAAATATGCAAAAGAGA-----CTTGTGGAGTTATAGTTAGTAATTAAATAATAATGATTAAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87825727 234 - 180051392 acttttagactgaggctcaagttaacagtgaagagggaaccgtaatCCTCT-CTGTTAGACCC-GAGGAAAATCACTTCTGAATGTTACAGTGT-----TTGCTGTTCCTTCCCTTTGAGTCCCCTAGTTATT--------T--TTTTTTCGAATTTAGATTTTCTATTACTGCAATAA----TTTTTCCAGTTTCAAGAAATATTCAAAAGAAA-----CTTGTGGAGTTATTGTTAGTAA-TGAATAATAATGATTAAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87930141 234 - 181584905 ACTTTTAGACCGAGGCTCAAGTTAACAGTGAAGAGGGAACCGTAATCCTCT-CTGTTAGACCC-GAGGAAAATCACTTCTGAATGTTACAGTGT-----TTGCTGTTCCTTCCCTTTGAGTCCCCTAGTTATT--------T--TTTTTTCGAATTTAGATTTTCTATTACTGCAATAA----TTTTTCCAGTTTCAAGAAATATTCAAAAGAAA-----CTTGTGGAGTTATTGTTAGTAA-TGAATAATAATGATTAAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153051 234 - 8785636 acttttagactgaggctcaagttaacagtgaagagggaaccgtaatCCTCT-CTGTTAGACCC-GAGGAAAATCACTTCTGAATGTTACAGTGT-----TTGCTGTTCCTTCCCTTTGAGTCCCCTAGTTATT--------T--TTTTTTTGAATTTAGATTTTCTATTACTGCAATAA----TTTTTCCAGTTTCAAGAAATATTCAAAAGAAA-----CTTGTGGAGTTATTGTTAGTAA-TGAATAATAATGATTAAC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1621283 235 + 27333823 acttttagactgaggctcaagttaactgtgaagagggaaccgtaatCCTCT-CTGTTAGACCC-GAGGAAAATCACTTCTGAATGTTACAGTGT-----TTGCTGTTCCTTCCCTTTGAGTCCCCTAGTTATT--------C--TTTTTCCGAATTTAGATTTTCTCGTATTGCAATAA----TTTTTCCCGTTTCAAGAAATATTCAAAAGAGA-----CTTGTGGAGTTATTGTTAGTAATTAAATAATAATGATTAAC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1891385 234 - 91010382 ACTTTTAGACTGAGGCTGAAGTTAACAGTGAAGAGGGAACCGTAATCCTCT-CTGTTAGACCT-GAGGAAAATCACTTCTGAATGTTACAGTGT-----TTGCTGTTCCTTCCCTTTGAGTCCCCTAGTTATT--------T--TTTTTTCGAATTTAGATTTTCTATTACTGCAATAA----TTTTTCCAGTTTCAAGAAATATTCAAAAGAAA-----CTTGTGGAGTTATTGTTAGTAA-TGAATAATAATGATTAAC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2002406 235 + 5179401 acttttagactgagactcaagttaactgtgaaaagggaaccgtaatCCACT-CTGTTAGACCC-AAGGAAAATCACTTCTGAATGTTACAGTGT-----TTGCTGTTCCTTCCCTTTGAGTCCCCTAGTTATT--------C--TTTTTCCGAATTTAGATTTTCTAGTATTGCAATAA----TTTTTCCAGTTTCAAGAAATATTCAAAAGAGA-----CTTGTGGAGTTATTGTTAGTAATTAAATAATAATGATTAAC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7708289 235 - 21726897 acttttagactgaggctcaagttaactgtgaagagggaaccgtaatCCTCT-CTGTTAGACCC-GAGGAAAATCACTTCTTAATGTTACAGTGT-----TTGCTGTTCCTTCCCTTTGAGTCCCCTAGTTATT--------C--TTTTTCCAAATTTAGATTTTCTAGTATTGCAATAA----TTTTTCCAGTTTCAAGAAATATTCAAAAGAGA-----CTTGTGGAGTTATTGTTAGTAAGTAAATAATAATGATTAAC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112529544 238 + 204313951 ACTTTTAGACTGAGGCTCAAGTTAACATTGAAGAGGAAACTGTAATCCTCT-CTATTACATCC-AAGGAAAATCCCTTCTGAATGTTACAGTGTTGTGGTTGGTGTTCCTTCCCGTTAAGTTCCCTAGTCAT------------TTTTTCCGAATTTAGCTTTTCTATTATTGCAGTAC----TTTTTCTAGTTTCAAGAAATATGCAAAAGAGA-----CTTGTGGAGTTATTGTTAGTAAATACATAATAATGATTAAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44974812 224 + 71252344 ACTTTTAGACTGAGGCTCAAGTTAACATTGAAGAGGAAACTGTA---------------ACCC-GAGGAAAATCCCTTCTGAAGGTTACAGTGTTGTGGTTGGTGTTCCCTCCCGTTAAGTCCACTAGTTAT------------TTTTTCGGAATTTAGCTTTTCTATTATTGCAGTAC----TTTTTCTAGTTTCAAGAAATATGCAAAAGAGA-----CTTGTGGAGTTATTGTTAGTAATTACATAATAATGATTAAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 339335 238 - 1393929 acttttagactgaggctcaagttaacattgaagaggaaactataatCCTCT-CTATTACACCT-GAGGAAAATCCCTTCTGAATGTTACAGTGTTGTGGTTGGTGTTCCTTCCTATTAAGTCCCCTAGTTAT------------TTTTTCCGAATTTAGCTTTTCTATTATTGCAGTAC----TTTTTCTAGTTTCAAGATATGTGCAAAAGAGA-----CTTGTGGAGTTATTGTTAGCGATTACATAATAATGATTAAC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1416023 238 - 15889662 acttttagactgaggctcaagttaacattgaagaggaaactgtaatCCTGT-CTATTACGCCC-GAGGAAAATCCCTTCTGAATGTTACGGTGTTGTGCTTGGTGTTCCTTCCCGTTAAGTCCCCTAGTTAT------------TTTCTCCGAATTTAGCTTTTCTATTATTGCAGTAC----TTTTTCTAGTTTCAAGAAATATGCAAAAGAGA-----CTTGTGGAGTTATTGTTAGTAATTACATAATAATGATTAAC i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84826834 241 + 108143057 acttttagatggaggctcaagttaactttgaagaaggaactataatCCTCT-CTGTTATACCTGAGGGAAAATTTCTTCTGATTGTTAAAATGT-----TTGATATTCCTTCTCTTTAAGTCCCCTAGTTAGTTAA-----T--Tttttcagaatttagattttctattgttgtaataa--tttttttctagtttctaGAAATATGCAAAATAGA-----TTTGGGGAATTATTGTTAGTAATTAAATCATAATGATTAAC i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1297428 243 - 29863360 GCCTTTAGGCTAAGATTCATGTTAACTTTGAAGAAGGAACTATAATCCTCT-GTCTTACATCC-AAGGAAAATCCCTTCTGAATGTTACAGTGT-----TTGATATTCCTTCTCTTGAAGTCCCCTAATTAATTAGTTAATT--TTTTTCAGAATTTAGACTTTCTCTTATTGTAATAA----TTTTTCTAGTTTCTAGAAATATGCAAAAAAGA-----TCTGTGGAATTATTGTTAGTGACTAAATCATAATGATCAAC i otoGar3.GL873536 I 125 I 13 s canFam3.chr3 14314094 169 + 91889043 AATTTTAGACTTAGACTCAAGCTAACTCGAAAGAGGAG--------------CTGTTACATCC-------------TTCTGA-----------------TT---------------------CCCTAGTGAA------------TATTTCTGAATTTAGA----CTATTACTGCAGCCATTTTTTTTTTCAGTTTCGAGAAATATGCAAGGAAGG-----CTTGTAGAATCA---ATAACAATTAAATGATAACTAAT--- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1232374 240 - 11655695 ACTTTCAGGTTTAGGCTCAAGTTAACGTCAAAGAGGAAACTGCAATTGTCTGCTGTTACACCC-TAGGAAAGTCCCTTCTGAGTATTACAGTGT-----TTGATATTCCTTCTATTTAAGTCCTTCAGTGAGT--------TAATTTTGCACAATTCAGGCTTGCTATTATTGAAAAAA----TGTTTCCAGTTTCTAGAAATAAGAAAAAAAAAAAAGGCCCGTGGGATTATCATTAATAATGAAATAATAATGTAT--- i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I a score=81206.000000 s hg38.chr5_GL383530v1_alt 30893 7 + 101241 ACAATTA s panTro5.chr5 20259648 7 + 181907262 ACAATTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20276938 7 + 183735486 ACAATTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4762793 7 - 13748885 ACAATTG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53797950 7 - 163208435 ACAATTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87825961 7 - 180051392 ACAATTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87930375 7 - 181584905 ACAATTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153285 7 - 8785636 ACAATTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1621518 7 + 27333823 ACAATTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1891619 7 - 91010382 ACAATTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2002641 7 + 5179401 ACAATTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7708524 7 - 21726897 ACAATTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112529782 7 + 204313951 ACAATTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975036 7 + 71252344 ACAATTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 339573 7 - 1393929 ACAATTA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1416261 7 - 15889662 ACAATTA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84827075 6 + 108143057 ATAATA- i micMur3.chr12 C 0 C 0 s canFam3.chr3 14314263 7 + 91889043 ACAATTT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1232614 6 - 11655695 ACAATT- i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I e otoGar3.GL873536 1297671 13 - 29863360 I a score=1090549.000000 s hg38.chr5_GL383530v1_alt 30900 81 + 101241 ATTAATGTTC-CTGGTTAACAA-TTATAA-TGACCATGAGCCATTTGTTAAGCAAAATGTACCTGGTCCACT-CCCCCTTAAAGA s panTro5.chr5 20259655 81 + 181907262 ATTAATGTTC-CTGGTTAACAA-TTATAA-TGACCATGAGCCATTTGTTAAGCAAAATGTACCTGGTCCACT-CCCCCTTAAAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20276945 81 + 183735486 ATTAATGTTC-CTGGTTAACAA-TTATAA-TGACCATGAGCCATTTGTTAAGCAAAATGTACCTGGTCCACT-CCCCCTTAAAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4762800 81 - 13748885 ATTAATGTTC-CTGGTTAACAA-TTATAA-TGACCATGAGCCATTTGTTAAGCAAAATGTACCTGGTCCACT-CCCCCTTAAAGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53797957 82 - 163208435 ATTAATGTTC-CTGGTTAACAA-TTATAA-TGACCATGAACTATTTGTTAAGCAAAATGTACCTGGTCCACTCCCCCCTTAAAGA i nomLeu3.chr2 C 0 M 1708 s rheMac8.chr6 87825968 81 - 180051392 ATTAATATTC-CTGGTTAACAA-TTATAA-TGGCCATGAGCCATTTGTTAAGCAAAATGTACCTGGTCCACT-CCCCCTTAAAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87930382 81 - 181584905 ATTAATATTC-CTGGTTAACAA-TTATAA-TGGCCATGAGCCATTTGTTAAGCAAAATGTACCTGGTCCACT-CCCCCTTAAAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153292 81 - 8785636 ATTAATATTC-CTGGTTAACAA-TTATAA-TGGCCATGAGCCATTTGTTAAGCAAAATGTACCTGGTCCACT-CCCCCTTAAAGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1621525 81 + 27333823 ATTAATATTC-CTGGTTAACAA-TTATAA-TGGCCATGAGCCATTTGTTAAGCAAAATGTACCTGGTCCACT-CCCCCTTAAAGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1891626 81 - 91010382 ATTAATATTC-CTGGTTAACAA-TTATAA-TGGCCATGAGCCATTTGTTAAGCAAAATGTACCTGGTCCACT-CCCCCTTAAAGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2002648 81 + 5179401 ATTAATATTC-CTGGTTAACAA-TTATAA-TGGCCATGAGCCATTTGTTAAGCAAAATGTACCTGGTCCACT-CCCCCTTAAAGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7708531 81 - 21726897 ATTAATATTC-CTGGTTAACAA-TTATAA-TGGACATGAGCCATTTGTTAAGCAAAACGTACCTGGTCCACT-CCCTCTTAAAGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112529789 81 + 204313951 ATGAATGTTC-CTGGTTAACAA-TTATAA-TGTCCATGAGTTATTTGTTAAGCAAAATGTACCTGGTCCACT-CCCCCTTAAAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975043 81 + 71252344 ATGAATGTTC-CTGGTTAACAA-TTATAA-TGCCCATGAGTTATTTGTTCGGCAAAATGCACCTGGTCCACT-CCCACTTAAAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 339580 81 - 1393929 ATGAATGTCC-CTGGTTAACAA-TTATAA-TGTCCATGAGTCATTTGTTAAGCAAAATGTACCCGGTTCACT-CCCCCTTAGAGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1416268 81 - 15889662 ATGAATGTTC-CTGGTTAACAA-TTATAA-TGTCCATGAGTTATTTGTTAAGCAAAATGTACCTGATCCACT-CCCGCTTAAAGA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84827081 80 + 108143057 ATTAATGTCC-TTGGTTAATGA-TCATAA-CAACAATGAGTCACTTGTTAAGCAAA-TGTACCTGGTCCACC-CCCCCTTTAATA i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1297684 78 - 29863360 ATTAATGTCC-TTGGTTGAGAA-TCAT----AACAGTGAGCCACTTGTTAAGCAAAGGGTATCTGGTCCACT-CCTTCCTGCAGA i otoGar3.GL873536 I 13 C 0 s canFam3.chr3 14314270 82 + 91889043 ATTAATGCCC-CTGATTAACGAGTCATAACCAACAATGAGCTACTGGTTAAGCAAAA-GTGCTCGGTTTACT-CCCCCTGAAAGG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1232620 83 - 11655695 ATTAGTGTCCTCTGATCAACAA-TTGTGACCAATAAAGGGGCACTTATTAAGCAAAACATATCTGGCTGGTT-CCTCCTTAAAGA i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I a score=45056.000000 s hg38.chr5_GL383530v1_alt 30981 4 + 101241 GGGG s panTro5.chr5 20259736 4 + 181907262 GGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277026 4 + 183735486 GGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4762881 4 - 13748885 GGGG i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87826049 4 - 180051392 AGGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87930463 4 - 181584905 AGGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153373 4 - 8785636 AGGG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1621606 4 + 27333823 AGGG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1891707 4 - 91010382 AGGG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2002729 4 + 5179401 AGGG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7708612 4 - 21726897 AGGG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112529870 4 + 204313951 GGGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975124 4 + 71252344 GGGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 339661 4 - 1393929 GGGG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1416349 4 - 15889662 GGGA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84827161 4 + 108143057 GGAG i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1297762 4 - 29863360 GGAG i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14314352 3 + 91889043 -GAG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1232703 4 - 11655695 AGAG i dasNov3.JH570378 C 0 I 40 e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I e nomLeu3.chr2 53798039 1708 - 163208435 M a score=48971.000000 s hg38.chr5_GL383530v1_alt 30985 5 + 101241 TGTGA- s panTro5.chr5 20259740 5 + 181907262 TGTGA- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277030 5 + 183735486 TGTGA- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4762885 5 - 13748885 TGTGA- i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87826053 5 - 180051392 TGTGA- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87930467 5 - 181584905 TGTGA- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153377 5 - 8785636 TGTGA- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1621610 5 + 27333823 TGTGC- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1891711 5 - 91010382 TGTGA- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2002733 5 + 5179401 TGTGC- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7708616 5 - 21726897 TGTGA- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112529874 5 + 204313951 TGTGA- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975128 5 + 71252344 TGTGA- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 339665 5 - 1393929 TGTGA- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1416353 5 - 15889662 TGTGA- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84827165 5 + 108143057 TGTGA- i micMur3.chr12 C 0 I 466 s otoGar3.GL873536 1297766 5 - 29863360 TGTGA- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14314355 6 + 91889043 CTTCAA i canFam3.chr3 C 0 C 0 e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1232707 40 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e nomLeu3.chr2 53798039 1708 - 163208435 M a score=33255.000000 s hg38.chr5_GL383530v1_alt 30990 3 + 101241 CGA s panTro5.chr5 20259745 3 + 181907262 CGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277035 3 + 183735486 CGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4762890 3 - 13748885 TGA i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87826058 3 - 180051392 TGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87930472 3 - 181584905 TGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153382 3 - 8785636 TGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1621615 3 + 27333823 TGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1891716 3 - 91010382 TGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2002738 3 + 5179401 TGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7708621 3 - 21726897 TGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112529879 3 + 204313951 TGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975133 3 + 71252344 TGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 339670 3 - 1393929 TGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1416358 3 - 15889662 TGA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1297771 3 - 29863360 TGa i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14314361 3 + 91889043 TGA i canFam3.chr3 C 0 I 2 e micMur3.chr12 84827170 466 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1232707 40 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e nomLeu3.chr2 53798039 1708 - 163208435 M a score=42510.000000 s hg38.chr5_GL383530v1_alt 30993 7 + 101241 TGatttt s panTro5.chr5 20259748 7 + 181907262 TGATTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277038 7 + 183735486 TGatttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4762893 7 - 13748885 TGATTTT i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87826061 7 - 180051392 TTAtttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87930475 7 - 181584905 TTAtttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153385 7 - 8785636 TTAtttt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1621618 7 + 27333823 TTAtttt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1891719 7 - 91010382 TTAtttt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2002741 7 + 5179401 TTAtttt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7708624 7 - 21726897 TTAtttt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112529882 7 + 204313951 TTGtttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975136 7 + 71252344 TTGtttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 339673 7 - 1393929 TTGTTTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1416361 2 - 15889662 TT----- i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1297774 7 - 29863360 ttaattc i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14314364 2 + 91889043 I e micMur3.chr12 84827170 466 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1232707 40 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e nomLeu3.chr2 53798039 1708 - 163208435 M a score=5761.000000 s hg38.chr5_GL383530v1_alt 31000 5 + 101241 att--tt s panTro5.chr5 20259755 5 + 181907262 ATT--TT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277045 5 + 183735486 att--tt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4762900 5 - 13748885 TAt--tt i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87826068 5 - 180051392 att--tt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87930482 5 - 181584905 att--tt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153392 5 - 8785636 att--tt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1621625 5 + 27333823 att--tt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1891726 5 - 91010382 att--tt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2002748 5 + 5179401 att--tt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7708631 5 - 21726897 att--tt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112529889 3 + 204313951 att---- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975143 3 + 71252344 ctt---- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 339680 5 - 1393929 ATTTT-- i cebCap1.NW_016107830v1 C 0 I 17 e canFam3.chr3 14314364 2 + 91889043 I e micMur3.chr12 84827170 466 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1232707 40 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e otoGar3.GL873536 1297781 0 - 29863360 C e aotNan1.NW_018506370v1 1416363 0 - 15889662 C e nomLeu3.chr2 53798039 1708 - 163208435 M a score=241153.000000 s hg38.chr5_GL383530v1_alt 31005 64 + 101241 gttttattttattttattttatttattta-tgtttttgagacagaatctcactctgatgcccacg s panTro5.chr5 20259760 64 + 181907262 GTTCTGttttattttattttatttattta-tttttttgagacagaatctcactctgatgcccacg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277050 65 + 183735486 gttttattttattttattttatttatttattttttttgagacagaatctcactctgatgcccacg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4762905 53 - 13748885 g----------ttttattttatttattta--ttttttgagacagaatctcactctgatgcccacg i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87826073 41 - 180051392 gt-----------------------ttta-tttttttgacacagggtcccactctgatgcccagg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87930487 41 - 181584905 gt-----------------------ttta-tttttttgacacagggtcccactctgatgcccagg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153397 40 - 8785636 gt-----------------------ttt--tttttttgacacagggtcccactctgatgcccagg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1621630 41 + 27333823 gt-----------------------ttta-tgtttttgacacagggtcccactctgatgcccagg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1891731 41 - 91010382 gt-----------------------ttta-tttttttgacacagggtcccactctgatgcccagg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2002753 41 + 5179401 gt-----------------------ttta-tgtttttgacacagggtcccactctgatgcccagg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7708636 41 - 21726897 gt-----------------------ttta-tttttttgagacagggtcccactctgatgcccagg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112529892 39 + 204313951 -------------------------ttta-tttttttgaaacagggtctcactctgatgcccagg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975146 39 + 71252344 -------------------------ttta-tttttttgaaagaggatctcactctgatgcccagg i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1416363 47 - 15889662 ---------------Gttttatt--ttta-tttttttgaaacagggtctcactctgatgcccagg i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14314364 2 + 91889043 I e micMur3.chr12 84827170 466 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1232707 40 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e otoGar3.GL873536 1297781 0 - 29863360 C e cebCap1.NW_016107830v1 339685 17 - 1393929 I e nomLeu3.chr2 53798039 1708 - 163208435 M a score=2237400.000000 s hg38.chr5_GL383530v1_alt 31069 265 + 101241 ctagagtgcagtggtgagatcgtggctcactgcagcctcgacttcccggttcaggtga-ttctccctactcagcctcctgagtagctgggactacaggcatgcaccaccatgcctggctaatttttgtattttttgtagagatggggttttgccatgttgctcaggctggtctcaaactcctgggctcaagtgatccactcaccatggcctcccaaaatgttgggattatagacgtgagccaccacacccagccATAATTAATTTT s panTro5.chr5 20259824 265 + 181907262 ctagagtgcagtggtgagatcgtggctcactgcagcctcaacttcccggttcaggtga-ttcttcctactcagcctcctgagtagctgggactacaggcatgcaccaccatgcctggctaatttttgtattttttgtggagatggggttttgccatgttgctcaggctggtctcaaactcctgggctcaagtgatccactcaccatggcctcccaaaatgttgggattataggcgtgagccaccacacccagccATAATTAATTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277115 265 + 183735486 ctagagtgcagtggtgagatcgtggctcactgcagcctcgacttcctggttcaggtga-ttctccctactcagactcctgagtagctgggactacaggcatgcaccaccatgcctggctaatttttgtattttttgtggagatggggttttgccatgttgctcaggctggtctcaaactcctgggctcaagtgatccactcaccatggcctcccaaaatgttgggattataggcatgagccaccacacccagccataattaatttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4762958 265 - 13748885 ctagagtgcagtggtgagatcgtggctcactgcagcctcgacttcctggttcaggtga-ttctccctactcagcctcctgagtagctgggactacaggcatgcaccaccatgcctggctaatttttgtattttttgtagagatggggttttgccatgttgctcaggctggtctcaaactcctgggctcaagtgatccgctcaccatggcctcccaaaatgttgggattataggcgtgagccaccacacccagccATAATTAATTTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53799748 265 - 163208435 CCAgagtgcagttgtgagatcgtggctcactgcagcctcaacttcccggttcaggtga-ttctccctacccagcctcctgagtagctgggactacaggcatgcaccaccatgcctggctaatttttgtattttttgtagaggcagggttttgccatgttgctcaggctggtctcaaactcctgggctcaagtgatccactcaccatggcctcccaaaatgttgggattataggcgtgagccaccacacccagccATGATTAATTTT i nomLeu3.chr2 M 1708 C 0 s rheMac8.chr6 87826114 265 - 180051392 ctagagtgcagaggtgagatcgtggctcactgcagcctcaacttcccggttccagtga-ttctccctactcagactcttgagtagctgggaatacaggcatacaccaccatgcctggctaatttttgtattttttgtagaggcagggttttgcctttttgctcaggctaatctcaaactcctgggcttaagtgatccactcaccatggcctcccaaaatgttgggattataggcgtgagccaccacacccagccATGATTAATTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87930528 265 - 181584905 ctagagtgcagaggtgagatcgtggctcactgcagcctcaacttcccggttccggtga-ttctccctactcagactcctgagtagctgggaatacaggcatacaccaccatgcctggctaatttttgtattttttgtagagacagggttttgcctttttgctcaggctaatctcaaactcctgggcttaagtgatccactcaccatggcctcccaaaatgttgggattataggcgtgagccaccacacccagccATGATTAATTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153437 265 - 8785636 ctagagtgcagaggtgagatcgtggctcactgcagcctcaacttcccggttccggtga-ttctccctactcagactcctgagtagctgggaatacaggcatacaccaccatgcctggctaatttttgtattttttgtagagacagggttttgcctttttgctcaggctaatctcaaactcctgggcttaagtgatccactcaccatggcctcccaaaatgttgggattataggcgtgagccaccacacccagccATGATTAATTTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1621671 265 + 27333823 ctagagtgcagaggtgagatcgtggctcactgcagcctcaacttcccggttccggtga-ttctccctactcagcctcctgagtagctgggaatacaggcatgcaccaccatgcctggctaagttttgtattttttgtagagacagggttttgccttgttgctcaggctaatctcaaactcctgggcttaagtgatccactcaccatggcctcccaaaatgttgggattataggcgtgagccaccacatccagccATGATTAATTTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1891772 265 - 91010382 ctagagtgcagaggtgagatcgtggctcactgcagcctcaacttcccggttccggtga-ttctccctagtcagcctcctgagtagctgggaatacaggcatacaccaccatgcctggctaatttttgtattttttgtagagacagggttttgccttgttgctcaagctaatctcaaactcctgggcttaagtgatccactcaccatggcctcccaaaatgttgggattataggcgtgagccaccacacccagccATGATTAATTTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2002794 265 + 5179401 ctagagtgcagaggtgagatcgtggctcactgcagcctcaacttcccggttccggtga-ttctccctactcagcctcctgagtagctgggaatacaggcatgcaccaccatgcctggctaatttttgtattttttgtagagacagggttttgccttgttgctcaggctaatctcaaactcctgggcttaagtgatccactcaccatggcctgccaaaatgttgggattataggcgtgaaccaccacatccagccATGATTAATTTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7708677 265 - 21726897 ctagagtgcagaggtgagatcgtggctcactgcagcctcaacttcccggttccggtga-ttctccctactcagcctcctgagtagctgggaatacaggcatgcaccaccatgcctggctaatttttgtattttttgtagagacaaggttttgccttgttgctcaggctaatctcaaactcctgggcttaagtgatccactcaccatggcctcccaaaatgttgggattataggcgtgagccaccacactcagccATGATTAATTTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112529931 247 + 204313951 ctagagtgcagtggtgagatcatagctctctgcagcctcaacttctcagttcaggtga-ttttccctactcagcctcctgagtggctgagactgcaggcatgtaccaccatgcctggctaatttttgtat----------------gttttgcca-tttacccaggctggtcttcaactcctgggctaaagtgatctac-caccatggccttccaaaatgttgggattataggtgtgagccaccacacccagACATGGTTAATTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975185 247 + 71252344 ttagagtgcagtggtgagatcataggtctctgcagcctcaacttctcagttcaggtga-ttttccctactctgcctcctgagtggctgagactgcaggcatgtaccaacatgcctggctaa-ttttgtat----------------gttttgccattttgctcaggctggtcttgaactcctgggctaaagtgatctac-caccatggcctcccaaaatgtcaggattataggtgtgagccaccacacccagccATGGTTAGTttt i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1416410 241 - 15889662 ctagagtgcagtggtgagatcatagctctctgcagcctcaacttctcagttcaggtgatttttccttactcagcctcctgagtggctgaggctgtaggcatgtaccaccatgcctggctaatttttgtat----------------gttttgccattttgcccaggctgg--------tcctgggctaaagtggtctac-caccatggcctcccaaaatgttgggattataggtgtgagccaccacactcaaccATGGTTAATttt i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14314364 2 + 91889043 I e micMur3.chr12 84827170 466 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1232707 40 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e otoGar3.GL873536 1297781 0 - 29863360 C e cebCap1.NW_016107830v1 339685 17 - 1393929 I a score=551160.000000 s hg38.chr5_GL383530v1_alt 31334 59 + 101241 ATATGTCAACTTGGAGGGTGTTTTGGGtttttggatgagatgaac----atttaagctgatga s panTro5.chr5 20260089 59 + 181907262 ATATGTCAACTTGGAGGGTGTTTTGGGtttttggatgagatgaac----atttaagttgatga i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277380 59 + 183735486 atATGTCAACTTGGAGGGTGTTTTGGGtttttggatgagatgaac----atttaagttgatga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4763223 63 - 13748885 ATATGTCAACTTGGAGGGTGCTTTCGCtttttggatgagatgaacatttatttaagttgatga i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800013 59 - 163208435 ATATGTCAACTTGGAGGATATTTTGGGtttttggatgagatgaac----atttaagttgagga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87826379 59 - 180051392 ACATGTCAACTTGGAGGGTGTTTTGGGtttttggatgagatgaac----atttaagttgatga i rheMac8.chr6 C 0 I 3 s macFas5.chr6 87930793 59 - 181584905 ACATGTCAACTTGGAGGGTGTTTTGGGtttttggatgagatgaac----atttaagttgatga i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153702 59 - 8785636 ACATGTCAACTTGGAGGGTGTTTTGGGtttttggatgagatgaac----atttaagttgatga i macNem1.NW_012011400v1 C 0 I 3 s cerAty1.NW_012002401v1 1621936 59 + 27333823 ACATGTCAACTTAGAGGGTGTTTTGGGtttttggatgagatgaac----atttaagttgatga i cerAty1.NW_012002401v1 C 0 I 3 s chlSab2.chr4 1892037 59 - 91010382 ACATGTCAACTTGGAGGGTGTTTTGGGtttttggatgagatgaac----atttaagttgatga i chlSab2.chr4 C 0 I 3 s manLeu1.NW_012103732v1 2003059 59 + 5179401 ACATGTCAACTTAGAGGGTGTTTTGGGtttttggatgagatgaac----atttaagttgatga i manLeu1.NW_012103732v1 C 0 I 3 s colAng1.NW_012115488v1 7708942 58 - 21726897 ACATGTCAGCTTGGAGGGTGTTTTGGGtttttggatgaaatgaac----atttaagttgatg- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530178 59 + 204313951 ATATGTCAGCTTGGAGGATGTTTTGGGTGtttggatgagatgaac----atctaagttggtga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975432 59 + 71252344 atatgtcagcttggagggtgtttggggtgtttggatgagatgaac----atctaagttggtga i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1416651 59 - 15889662 atatgtcagcttggagggtgttttgggtgtttggatgagatgaac----atctaagttggtga i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1297781 52 - 29863360 atgtgtcaccttgcaaggtgtt-------tttgaataagattaat----gtttaaattggtga i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14314364 2 + 91889043 I e micMur3.chr12 84827170 466 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1232707 40 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e cebCap1.NW_016107830v1 339685 17 - 1393929 I a score=-6108.000000 s hg38.chr5_GL383530v1_alt 31393 8 + 101241 gtaaataa s panTro5.chr5 20260148 8 + 181907262 gtaaataa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277439 8 + 183735486 gtaaataa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4763286 8 - 13748885 gtaaatag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800072 8 - 163208435 gtaagtaa i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87930852 3 - 181584905 ---act-- i macFas5.chr6 C 0 C 0 s colAng1.NW_012115488v1 7709000 4 - 21726897 --aact-- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530237 5 + 204313951 ---actta i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975491 5 + 71252344 ---actta i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1416710 5 - 15889662 ---acttt i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1297833 4 - 29863360 ---gcta- i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14314364 2 + 91889043 I e micMur3.chr12 84827170 466 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1232707 40 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e cebCap1.NW_016107830v1 339685 17 - 1393929 I e manLeu1.NW_012103732v1 2003118 3 + 5179401 I e chlSab2.chr4 1892096 3 - 91010382 I e cerAty1.NW_012002401v1 1621995 3 + 27333823 I e macNem1.NW_012011400v1 1153761 3 - 8785636 I e rheMac8.chr6 87826438 3 - 180051392 I a score=394043.000000 s hg38.chr5_GL383530v1_alt 31401 41 + 101241 gtaagtaagtggattctcctccataatgagggtgggcctca s panTro5.chr5 20260156 41 + 181907262 gtaagtaagtggattctcctccataatgagggtgggcctca i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277447 41 + 183735486 gtaagtaagtggattctcctccataatgagggtgggcctca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4763294 41 - 13748885 gtaagtaagtggattctcctccataatgagggtgggcctca i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800080 41 - 163208435 gtaagtacgtggattctcctccataatgggggtgagcctca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87826441 41 - 180051392 gtaagtaagtggattctcctccataatgggggtgggcctca i rheMac8.chr6 I 3 C 0 s macFas5.chr6 87930855 41 - 181584905 gtaagtaagtggattctcctccataatgggggtgggcctca i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153764 41 - 8785636 gtaagtaagtggattctcctccataatgggggtgggcctca i macNem1.NW_012011400v1 I 3 C 0 s cerAty1.NW_012002401v1 1621998 41 + 27333823 gtaagtaagtggattctcctccataatgggggtgggcctca i cerAty1.NW_012002401v1 I 3 C 0 s chlSab2.chr4 1892099 41 - 91010382 gtaagtaagtggattctcctccataatgggggtgggcctca i chlSab2.chr4 I 3 C 0 s manLeu1.NW_012103732v1 2003121 41 + 5179401 gtaagtaagtggattctcctccataatgggggtgggcctca i manLeu1.NW_012103732v1 I 3 C 0 s colAng1.NW_012115488v1 7709004 41 - 21726897 gtaagtaaatggattctcctccataatgagggtgggcctta i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530242 35 + 204313951 ------aagtggattctcctccataatgggggtgggcctca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975496 34 + 71252344 ------aagtggattctcctccataat-ggggtgggcctca i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1416715 35 - 15889662 ------aagtggattctcctccataatgggggtgggcctca i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1297837 40 - 29863360 -tgagtaagtagattgtcctcccttctgtgggtgggcctca i otoGar3.GL873536 C 0 I 148 e canFam3.chr3 14314364 2 + 91889043 I e micMur3.chr12 84827170 466 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1232707 40 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e cebCap1.NW_016107830v1 339685 17 - 1393929 I a score=701110.000000 s hg38.chr5_GL383530v1_alt 31442 95 + 101241 tccaatcagttgaaggactgaatagaatgaaaagatgccctcagcaagggagaaatctccaaaggactgccttcagacttcatccacaccatcgt s panTro5.chr5 20260197 95 + 181907262 tccaatcagttgaaggactgaatagaatgaaaagatgccctcagcaagggagaaatctccaaaggactgccttcagacttcatccacaccatcgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277488 95 + 183735486 tccaatcagttgaaggactgaatagaatgaaaagatgccctcagcaagggagaaatctccaaaggactgccttcagacttcatccacaccatcgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4763335 94 - 13748885 tccaatcagttgaaggactgaatagaatgaaaagatg-cctcagcaagggagaaatctccaaaggactgccttcagacttcatccacaccatcgt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800121 95 - 163208435 tccaatcagttgaaggactgaatagaatgaaaagatgccctcagcaagagagaaatctccaaaggactgccttcaaacttcatccacaccattgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87826482 95 - 180051392 tccaatcagttgaaggactgaatagaatgaaaagatgtcctgagcaagagagaaatctccaaaggactcccttcaaacttcatccacaccatcat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87930896 95 - 181584905 tccaatcagttgaaggactgaatagaatgaaaagatgtcctgagcaagagagaaatctccaaaggactcccttcaaacttcatccacaccatcat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153805 95 - 8785636 tccaatcagttgaaggactgaatagaatgaaaagatgtcctgagcaagagagaaatctctaaaggactcccttcaaacttcatccacaccatcat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1622039 95 + 27333823 tccaatcagctgaaggactgaatagaatgaaaagatgtcctgagcaagagagaaatctccaaaggactcccttcaaacttcatccacaccatcgt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1892140 94 - 91010382 gccaatcagttgaaggactgaatagaatgaaaagatgtcctgagcaagagag-aatctccaaaggactcccttcaaacttcatccacaccatcgt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2003162 95 + 5179401 tccaatcagttgaaggactgaatagaatgaaaagatgtcctgagtaagagagaaatctccaaaggactcccttcagacttcatccacaccatcgt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7709045 95 - 21726897 tccaatcagttgaaggattgaatagaatgaaaagacgtcctgagcacgagagaaatctccaaaggactcccttcaaacttcatccacaccatcgt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530277 66 + 204313951 tcccatcagttgaaagac---------tgaaaagatatgccgagcaagagagaaatctccaaaggact--------------------ccaacat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975530 75 + 71252344 tcccatcagttgaaggactgaaaagaatgaaaagatatgccgagtaagagagaaatctccaaagggct--------------------ccatcat i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1416750 75 - 15889662 tcccatcagttgaaggactgaaaagaataaaaatatatgctgagcaagagagaaatctccaaaggact--------------------ccatcat i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14314364 2 + 91889043 I e micMur3.chr12 84827170 466 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1232707 40 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e otoGar3.GL873536 1297877 148 - 29863360 I e cebCap1.NW_016107830v1 339685 17 - 1393929 I a score=659695.000000 s hg38.chr5_GL383530v1_alt 31537 73 + 101241 ctctcatgggtttccagcctgctggctcacactgcagactctggacttgccagcctctatggtcaagtgatcc s panTro5.chr5 20260292 73 + 181907262 ctctcatgggtttccagcctgctggctcacactgcagactctggacttgccagcctctatggtcaagtgatcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277583 73 + 183735486 ctctcatgggtttccagcctgctggctcacactgcagactctgcacttgccagcctctatggtcaagtgatcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4763429 72 - 13748885 ctctcatgggtttccagcctgctggctcacactgcagactctggacttgccagcctctatggtc-agtgatcc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800216 73 - 163208435 ctctcatgggtttccagcctgctggctcacactgctgactctggacttgccagcctctatggtcaagtgagcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87826577 73 - 180051392 ctctcatgggtctccagcctgctggctcacattgtagactctggtcttgccagcctttatggtcaagtgagcc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87930991 73 - 181584905 ctctcatgggtctccagcctgctggctcacattgtagactctggtcttgccagcctttatggtcaagtgagcc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153900 73 - 8785636 ctctcatgggtctccagcctgctggctcacattgtagactctggtcttgccagcctttatggtcaagtgagcc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1622134 73 + 27333823 ctctcatgggtctccagcctgctggctcacaatgtagactctggacttgccagcctttatggtcaagtgagcc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1892234 73 - 91010382 ctctcatgggtctccagcctgctggctcacactgtagactctggtcttgccagcctttatggtcaagtgagcc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2003257 73 + 5179401 ctctcatgggtctccagcctgctggctcacaatgtagactctggacttgccagcctttatggtcaagtgagcc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7709140 73 - 21726897 ctctcgtgggtctccagcctgctggttcacactgtagactctggacttgccaaccgttatggtcaagtgagcc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530343 70 + 204313951 ctctcctgggtctctagcccgctggctcacactgtggactctggacttgccagccc---tggtcaagtgagcc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975605 70 + 71252344 ctctcctgggtatctagcctgctggctcacactgtcgactctggacttgccagccc---tggttaagtgagcc i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1416825 70 - 15889662 gtcttcttggtctctagcctgctggctcacactgtagactctggacttgccagccc---tggtcaagtgagcc i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1298025 73 - 29863360 ctctcctgggtctgcaggctgctggcccacattgcagattttggacttgtcagccttcataatcgtttctgtt i otoGar3.GL873536 I 148 C 0 e canFam3.chr3 14314364 2 + 91889043 I e micMur3.chr12 84827170 466 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1232707 40 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e cebCap1.NW_016107830v1 339685 17 - 1393929 I a score=273530.000000 s hg38.chr5_GL383530v1_alt 31610 34 + 101241 aattctttacaataaatttctttcaa------------------------------------------tatataT-------------------------------------------------------------------------G s panTro5.chr5 20260365 34 + 181907262 aattctttacaataaatttctttcaa------------------------------------------tatataT-------------------------------------------------------------------------G i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277656 34 + 183735486 aattctttacaataaatttctttcaa------------------------------------------tatataT-------------------------------------------------------------------------G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4763501 34 - 13748885 aattctttacaataaatttctttcaa------------------------------------------catataT-------------------------------------------------------------------------G i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800289 34 - 163208435 aattccttacaataaatttctttcaa------------------------------------------tatatat-------------------------------------------------------------------------g i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87826650 34 - 180051392 aattccttacagtaaatttctttcaa------------------------------------------tatataT-------------------------------------------------------------------------G i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87931064 34 - 181584905 aattccttacagtaaatttctttcaa------------------------------------------tatataT-------------------------------------------------------------------------G i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1153973 34 - 8785636 aattccttacagtaaatttctttcaa------------------------------------------tatataT-------------------------------------------------------------------------G i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1622207 34 + 27333823 aattccttacaataaatttctttcaa------------------------------------------tatataT-------------------------------------------------------------------------G i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1892307 34 - 91010382 aattccttacagtcaatttctttcaa------------------------------------------tatataT-------------------------------------------------------------------------G i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2003330 34 + 5179401 aattccttacaataaatttctttcaa------------------------------------------tatataT-------------------------------------------------------------------------G i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7709213 34 - 21726897 aattccttacaataaatttctttcaa------------------------------------------tatataT-------------------------------------------------------------------------G i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530413 34 + 204313951 agttccttacaataaatctctttcaa------------------------------------------tatatat-------------------------------------------------------------------------g i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975675 34 + 71252344 aattccttactataaatctctttcaa------------------------------------------tatatat-------------------------------------------------------------------------g i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1416895 34 - 15889662 aattccttacaataaatctctttcaa------------------------------------------tatatat-------------------------------------------------------------------------g i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1298098 149 - 29863360 agttctttataataaatctctttctattctgccactgatagtttcttaattaaaaaaaaaaaaatctctatacattctgttagttctttttctctagtgaactctgactaatccaAGGGGTCATCCATAGAAAGTAATAGGCTGTATAA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14314366 33 + 91889043 AATTGTTCATATAATGTGTTGTGCTA------------------------------------------TATATA--------------------------------------------------------------------------A i canFam3.chr3 I 2 C 0 e micMur3.chr12 84827170 466 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e dasNov3.JH570378 1232707 40 - 11655695 I e mm10.chr13 76447954 8190 + 120421639 I e cebCap1.NW_016107830v1 339685 17 - 1393929 I a score=291936.000000 s hg38.chr5_GL383530v1_alt 31644 30 + 101241 AAGCACAGTCTATGTATATTAATTATGTGC s panTro5.chr5 20260399 26 + 181907262 AAGCACAGTCTATGTATATTA----TGTGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277690 26 + 183735486 AAGCACAGCCTATGTATATTA----TGTGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4763535 30 - 13748885 AAGCACAGTCTATGTATATTAATTATGTGC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800323 30 - 163208435 aagcacagtctatGCATATTAATTATGTAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87826684 30 - 180051392 AAGCACAGTCTATGTATATTAATTATGTAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87931098 30 - 181584905 AAGCACAGTCTATGTATATTAATTATGTAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1154007 30 - 8785636 AAGCGCAGTCTATGTATATTAATTATGTAC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1622241 30 + 27333823 AAGCACAGTCTATGTATATTAATTACGTAC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1892341 30 - 91010382 AAGCACAGTCTATGTATATTAATTATGTAC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2003364 30 + 5179401 AAGCACAGTCTATGTATATTAATTACATAC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7709247 30 - 21726897 AAGCACAGTCTCTGTATATTAATTATGTAC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530447 30 + 204313951 aagcacagtctatGTATGTTAATTATGTAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975709 30 + 71252344 aagcacagtctatGTATGTTAATTATGTAC i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1416929 30 - 15889662 aagcacagtctaCATATGTTAATTATGTAC i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1298247 26 - 29863360 AAGCACATCATATATGTATCAGTCAC---- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14314399 30 + 91889043 AAGCACAACGAATATATATTAATTGTATAC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1232747 28 - 11655695 AAACGCAATGCATGTA--TTAATTACATAC i dasNov3.JH570378 I 40 C 0 e micMur3.chr12 84827170 466 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I e cebCap1.NW_016107830v1 339685 17 - 1393929 I a score=58237.000000 s hg38.chr5_GL383530v1_alt 31674 5 + 101241 TTTTA s panTro5.chr5 20260425 5 + 181907262 TTTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277716 5 + 183735486 TTTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4763565 5 - 13748885 TTTTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800353 5 - 163208435 TTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87826714 5 - 180051392 TTTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87931128 5 - 181584905 TTTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1154037 5 - 8785636 TTTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1622271 5 + 27333823 TTTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1892371 5 - 91010382 TTTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2003394 5 + 5179401 TTTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7709277 5 - 21726897 TTTTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530477 4 + 204313951 TTTT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975739 5 + 71252344 TTTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 339702 5 - 1393929 TTTTA i cebCap1.NW_016107830v1 I 17 C 0 s aotNan1.NW_018506370v1 1416959 5 - 15889662 TTTTA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1298273 5 - 29863360 ATTTA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14314429 3 + 91889043 --TTA i canFam3.chr3 C 0 I 2 s dasNov3.JH570378 1232775 5 - 11655695 TTCTA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84827170 466 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I a score=2541823.000000 s hg38.chr5_GL383530v1_alt 31679 191 + 101241 AAATGTGAACAGATATACATAAAACTGTTT-ATGTGACTAAAATGTTTAAAATATTCCTTACTAAAGTGATAATTTTAACTGGTCCTAAAATTCTATCTTTA-AAAAA-----------------------------------------------------------------------------------------------------------GTAAGG--CCTGCATAGAAAAAGGG-AAAGTCTTAAAGTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- s panTro5.chr5 20260430 191 + 181907262 AAATGTGAACAGATATACATAAAACTGTTT-ATGTGACTAAAATGTTTAAAATATTCCTTACTAAAGTGACTATTTTAACTGGTCCTAAAATTCTATCTTTA-AAAAA-----------------------------------------------------------------------------------------------------------GTAAGG--CCTGCATAGAAAAAGGG-AAAGCCTTAAAGTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277721 191 + 183735486 AAATGTGAACAGATATACATAAAACTGTTT-ATGTGACTAAAATGTTTAAAATATTCCTTACTAAAGTGATTATTTTAACTGGTCCTAAAATTCTATCTTAA-AAAAA-----------------------------------------------------------------------------------------------------------GTAAGG--CCTGCATAGAAAAAGGG-AAAGCCTTAAAGTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4763570 191 - 13748885 AAATGTGAACAGATATACATAAAACTGTTT-ATGTGACTAAAATGTTTAAAATATTCCTTACTAAAGTGATTATTTTAACTGGTCCTAAAATTCTATCTTTA-AAAAA-----------------------------------------------------------------------------------------------------------GTAAGG--CCTGCATAGAAAAAGGG-AAAGCCTTAAAGTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800358 191 - 163208435 AAATGTGAGCAGATACACATAAAACTGTTT-ATGTGACTAAAATGTTTAAAATATTCCTTACTAAAGTGATTATTTTAACTAGTCCTAAAATTCTGTCTTTA-AAAAA-----------------------------------------------------------------------------------------------------------GTAAGG--CCTGCATAGAAAAAGGG-AAAGCCTTAAAGTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87826719 193 - 180051392 AAATGTGAACAGATATACATAAAACTGTTT-ATATGACTAAAATGTTTAAAATATTCCTTACTAAAGTGATTATTTTAACTGGTCCTAAAATTCTGTCTTTA-AAAAA-----------------------------------------------------------------------------------------------------------GTAAAGGTCCTTCATAGGAAAAGGG-AAAGCCTTAAAGTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87931133 193 - 181584905 AAATGTGAACAGATATACATAAAACTGTTT-ATATGACTAAAATGTTTAAAATATTCCTTACTAAAGTGATTATTTTAACTGGTCCTAAAATTCTGTCTTTA-AAAAA-----------------------------------------------------------------------------------------------------------GTAAAGGTCCTTCATAGAAAAAGGG-AAAGCCTTAAAGTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1154042 193 - 8785636 AAATGTGAACAGATATACATAAAACTGTTT-ATATGACTAAAATGTTTAAAATATTCCTTACTAAAGTGATTATTTTAACTGGTCCTAAAATTCTGTCTTTA-AAAAA-----------------------------------------------------------------------------------------------------------GTAAAGGTCCTTCATAGAAAAAGGG-AAAGCCTTAAAGTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1622276 193 + 27333823 AAATGTGAACAGATATACATAAAACTGTTT-ACATGACTAAAATGTTTAAAATATTCCTTACTAAAGTGATTATTTTAACTGGGACTAAAATTCTGTCTTTA-AAAAA-----------------------------------------------------------------------------------------------------------GTAAAGGTCCTGCATAGAAAAAGGG-AAAGCCTTAAAGTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1892376 193 - 91010382 AAATGTGAACAGATATACATAAAACTGTTT-ATATGACTAAAATATTTAAAATATTCCTTACTAAAGTGATTATTTTAACTGGTCCTAAAATTCTGTCTTTA-AAAAA-----------------------------------------------------------------------------------------------------------GTAAAGGTCCTTCATAGAAAAAGGG-AAAGCCTTAAAGTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2003399 193 + 5179401 AAATGTGAACAGACATACATAAAACTGTTT-ATATGACTAAAATGTTTAACATATTCCTTACTAAAGTGATTATTTTAACTGGTCCTAAAATTCTGTCTTTA-AAAAA-----------------------------------------------------------------------------------------------------------GTAAAGGTCCTGCATAGAAAAAGGG-AAAGCCTTAAAGTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7709282 193 - 21726897 AAATGTGAACAGATATACATAAAACTGTTT-ATATGACTAAAATGTTTAAAATATTCCTTACTAAAGTGATTATTTTCACTGGTCCTAAAATTCTATCTTTA-AAAAA-----------------------------------------------------------------------------------------------------------GTAAAGGTCCTGCATAGAAAAAGGG-AAAGCCTTAAAGTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530481 192 + 204313951 AAATGTGAAGAGATAGACATAAAACTGTTT-ATATGACTAAAATGTTTAAACTGTTCCTTTCTAAAGTAATTATTTTAACTGGTCCTGAAATTCTATCTTTT-AAAAA-----------------------------------------------------------------------------------------------------------GTAAAGG-CCTGCATGGAAAAAGGG-AAAGCCTTAAACTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975744 181 + 71252344 AAATGTGAAGAGATAGGCATAAAACTGTTT-ATATGACTAAAATGTTTAAACTGTTCTTTTCTAAAGTAATTAT------------TGAAATTCTATCTTTT-AAAAA-----------------------------------------------------------------------------------------------------------GTAAAGG-CCTGCATGGAAAAAGGGAAAAGCCTTAAAGTTTGCTTTGTAAAATTTCAT-AAATATT------------TTACATTTTGTGATAGCAGAAAT--- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 339707 192 - 1393929 AAATGTGAAGAGATAGACATAAAACTGTTT-ATTTGACTAAAATGTTTAAACTGTTCCTTTCTAAAGTAATTATTTTAACTGGTCCTGAAATTCTATCTTTT-AAAAA-----------------------------------------------------------------------------------------------------------GTAAAAG-CCTGCATGGAAAAAGGG-AAAACCTTAAAGTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1416964 193 - 15889662 AAATATGAAGAGATAGACATAAAACTATTT-GTATGACTAAAATGTTTAAACTGTTCCTTTCTAAAGTAATTATTTTAACTGGTCCTGAAATTCTATCTTTTAAAAAA-----------------------------------------------------------------------------------------------------------GTGAAGA-GCTGCATGGAAAAAGGG-AAAGCCTTAAAGTTTACTTTTTATAATTTCAT-AAATGTT------------TTACATTTTGTGATAGCAGAAAT--- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84827636 190 + 108143057 AAATGTGAAGAGATATACATAAAACTGTTTAATGTGACTAAAATCTTTAAAATATTCCTTACTAAAGTGATTATTTTAGCTGGCCCTCAAAGTCTATCTTTA-AAAAT-----------------------------------------------------------------------------------------------------------TTAAAGG-CCT---TAGAAAAAGGA-AAAGCCTTAAAGTTTACTATTTATAATTCCAT-AAACATT------------TTTCATCTTGTGATAGCATAAAT--- i micMur3.chr12 I 466 I 32 s otoGar3.GL873536 1298278 296 - 29863360 AAATATGAAGAGATATTCATGAAACTGTCTAATATGACTAAAATGTTTAAAATATTTCTTACTAAAGTGATTATTTTAACTGGCCCTAAAATTCTATTTTTA-AAAATGTAAAGTCCTGgggtggcgcctgtggtacaaaggaggagggcgctggtcccatatgctggaagtgtcgggttcagacccagcctcagccaaaaactgcaaaaaaaAAGTAAAGT-CCT---TAGAAAAAGGA-AAAG-CTTAAAGTTTACTTTTTATAATTTCAT-AAGCAAT------------TTGCATTTTGTGATAGTATAAAT--- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14314434 202 + 91889043 -AATGTTAGGAGATATACATAAAACTGTT--ATATAATTGAAAGATTTAAAATGGACCTAAGTAAAATGATTATCTTAACTCATCCTAAAATCCTACCTTAA-AAAAAG----------------------------------------------------------------------------------------------------------GTAAAAG-CCAGGGCAGAAAAAGGG-AAAACATC-AAGTTTACCTTTTATCATTTAAT-AGACACTTTTCATTTCCCCTTGCATTTTGTGAGAATGTAAAT--- i canFam3.chr3 I 2 I 3 s dasNov3.JH570378 1232780 208 - 11655695 AAATGTGAAAAGCTATATGTAAAACTGTTTAATGTGACTAAAATATTTAAGATATTCCTTACTAAGGAGATTATTTTAACTGGCCCTAAAATTCTACCATTA-AAAAA-----------------------------------------------------------------------------------------------------------GTGAAGA-GCTTAGTTGAAGAAGGG-CAAGTGTTAACGTTTTCCTTTTCCAACTTCATAAAACGTT-TTCATTTCCCCTTGCACTTTGTAATAGCCTAAGTAAA i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I a score=314253.000000 s hg38.chr5_GL383530v1_alt 31870 26 + 101241 GACATCCTTACAG----GA-AACAAACTGTA s panTro5.chr5 20260621 26 + 181907262 GACATCCTTACAG----GA-AACAAACTGTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277912 26 + 183735486 GACATCCTTACAG----GA-AACAAACTGTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4763761 26 - 13748885 GACATCCTTACAG----GA-AACAAACTGTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800549 26 - 163208435 GACATCCTTACAG----GA-AATAAACTGTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87826912 26 - 180051392 GACATCCTTACAG----GA-AACAAACTGTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87931326 26 - 181584905 GACATCCTTACAG----GA-AACAAACTGTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1154235 26 - 8785636 GACATCCTTACAG----GA-AACAAACTGTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1622469 26 + 27333823 GACATCCTTACAG----GA-AACAAACTGTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1892569 26 - 91010382 GACATCCTTACAG----GA-AACAAACTGTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2003592 26 + 5179401 GACATCCTTACAG----GA-AACAAACTGTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7709475 26 - 21726897 GACATCCTTACAG----GA-AACAAACTGTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530673 26 + 204313951 GGCATCCTTATAG----GA-AACAAACTGTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975925 26 + 71252344 GACATCCTTACAG----GA-AACAAACTGTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 339899 26 - 1393929 GACATCCTTACAG----GA-AACAAACTGTA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1417157 26 - 15889662 GACATCCTTACAG----GA-AACAAACTGTA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1298574 29 - 29863360 -AAATCCCTATGGTTAAAA-ATCAATCTGTA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14314639 26 + 91889043 GACATCACTGCAA----TA-CAACAACTGTA i canFam3.chr3 I 3 C 0 s dasNov3.JH570378 1232988 25 - 11655695 GAAATCCCTGTGG----TACGAGAAACTA-- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84827826 32 + 108143057 I e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I a score=371872.000000 s hg38.chr5_GL383530v1_alt 31896 24 + 101241 AAACCATGAAGCAGAATTCTTTAA s panTro5.chr5 20260647 24 + 181907262 AAACCATGAAGCAGAATTCTTTAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277938 24 + 183735486 AAACCATGAAGCAGAATTCTTTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4763787 24 - 13748885 AAACCATGAAGCAGAATTCTTTAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800575 24 - 163208435 AAACCATGAAGCAGAATTCTTTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87826938 24 - 180051392 AAACCATGAAGCAGAATTCTTTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87931352 24 - 181584905 AAACCATGAAGCAGAATTCTTTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1154261 24 - 8785636 AAACCATGAAGCAGAATTCTTTAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1622495 24 + 27333823 AAACCATGAAGCAGAATTCTTTAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1892595 24 - 91010382 AAACCATGAAGCAGAATTCTTTAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2003618 24 + 5179401 AAACCATGAAGCAGAATTCTTTAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7709501 24 - 21726897 AAACCATGAAGCAGAATTCTTTAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530699 24 + 204313951 AAACCATGAAGCAGAATTCTTTAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975951 24 + 71252344 AAACTATGAAGCAGAATTCTTTAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 339925 24 - 1393929 AAACCATGAAGCAGAATTCTTTAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1417183 23 - 15889662 AAACCATGAAGTAGAATTCTTT-A i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84827858 24 + 108143057 AAACTGTGAAGCAGAATTCTTTAT i micMur3.chr12 I 32 I 6 s otoGar3.GL873536 1298603 23 - 29863360 -AACCATGAAACAGAATTCTTTAC i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14314665 24 + 91889043 AAACCACGCAGCAGAATTCTTTAA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1233013 24 - 11655695 AAAACATGAAGCAAAAATTTTTTA i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 580301 17925 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I a score=2172332.000000 s hg38.chr5_GL383530v1_alt 31920 162 + 101241 AAGTTGAAGGAAAAATTAGGAAATTTTGTTCAGATATCAAACTCAAGTAAACTGTGTTGAA----TAAACAATTAGGTATCAATGTGTATTTTGTTAACCAAGGATAAATGCT-GAAAGAATCTTTAAAATTAGCAAGCTTTGACTATTAAAAT------ATGATTCTTAATT s panTro5.chr5 20260671 162 + 181907262 AAGTTGAAGGAAAAATTAGGAAATTTTGTTCAGATATCAAACTCAAGTAAACTGTGTTGAA----TAAACAATTAGGTATCAATGTGTATTTTGTTAACCAAGGATAAATGCT-GAAAGAATCTTTAAAATTAGCAAGCTTTGAATATTAAAAT------ATGATTCTTAATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20277962 162 + 183735486 AAGTTGAAGGAAAAATTAGGAAATTTTGTTCAGATATCAAACTCAAGTAAACTGTGTTGAA----TAAACAATTAGGTATCAATGTGTATTTTGTTAACCAAGGATAAATGCT-GAAAGAATCTTTAAAATTAGCAAGCTTTGAATATTAAAAT------ATGATTCTTAATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4763811 160 - 13748885 AAGTTGAAGGAAAAATTAGGAAATTTTGTTCAGATATCAAACTCAAGTAAACTGTGTTGAA----TAAACAATTAGGTATCAATGTGTATTTTGTTAACCAACGATAAATGCT-GAAAGAATCTTT-AAATTAGCAAGCTTTGAATATTAAAAT------ATGA-TCTTAATT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800599 162 - 163208435 AAGTTGAAGGAAAAATTAGGAAATTTTGTTCAGATATCAAACTCAAGTAAACTGTGTTGAA----TAAACAATTAGGTATCAATGGGTATTTTGTTAACCAAGGATAAATGCT-GAAAGAATCTTTAAAATTAGCAAGCTTTGAATATTAAAAT------ATGATTCTTAATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87826962 160 - 180051392 AAGTTGAAGG-AAAATTAGGAAATTTTGTTCAGATATCAAACTCAAGT-AACTGTGTTGAA----TAAAGAATTAAGTATCAATGTGTATTTTGTTAACCAATGATAAATGCT-GAAAGAATCTTTAAAATTAGCAAGCTTTGAATATTAAAAT------ATGATTCTTAATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87931376 160 - 181584905 AAGTTGAAGG-AAAATTAGGAAATTTTGTTCAGATATCAAACTCAAGT-AACTGTGTTGAA----TAAAGAATTAAGTATCAATGTGTATTTTGTTAACCAATGATAAATGCT-GAAAGAATCTTTAAAATTAGCAAGCTTTGAATATTAAAAT------ATGATTCTTAATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1154285 160 - 8785636 AAGTTGAAGG-AAAATTAGGAAATTTTGTTCAGATATCAAACTCAAGT-AACTGTGTTGAA----TAAACAATTAAGTATCAATGTGTATTTTGTTAACCAATGATAAATGCT-GAAAGAATCTTTAAAATTAGCAAGCTTTGAATATTAAAAT------ATGATTCTTAATT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1622519 160 + 27333823 AAGTTGAAGG-AAAATTAGGAAATTTTGTTCAGATATCAAACTCAAGT-AACTGTGTTGAA----TAAACAGTTAAGTATCAATGTGTATTTTGTTAACCAACGATAAATGCT-GAAAGAATCTTTAAAATTAGCAAGCTTTGAATATTAAAAT------ATGATTCTTAATT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1892619 160 - 91010382 AAGTTGAAGG-AAAATTAGGAAATTTTGTTCAGATATCAAACTCAAGT-AACTGTGTTGAA----TAAACAATTAAGTATCAATGTGTATTTTGTTAACCAATGATAAATGCT-GAAAGAATCTTTAAAATTAGCAAGCTTTGAATATTAAAAT------ATGATTCTTAATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2003642 160 + 5179401 AAGTTGAAGG-AAAATTAGGAAATTTTGTTCAGATATCAAACTCAAGT-AACTGTGTTGAA----TAAACAGTTAAGTATCAACGTGTATTTTGTTAACCAACGATAAATGCT-GAAAGAATCTTTAAAATTAGCAAGCTTTGAATATTAAAAT------ATGATTCTTAATT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7709525 160 - 21726897 AAGTTGAAGG-AAAATTAGGAAATTTTGTTCAGATATCAAACTCAAGT-AACTGTGTTGAA----TAAACAATTAAGTATCAATGTGTATTTTGTTAACCAAGGATAAATGCT-GAAAGAATCTTTAAAATTAGCAAGCTTTGAATATTAAAAT------ATGATTCTTAATT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530723 156 + 204313951 AAGTTAAAGGAAAAATCAGGAAGTTTTGTTCACATATCAAACTCAAATAAACTATGTTGAA----TAAACAA----GGATCAATGTATATTTTGTTAACCAA--ATGAATGCT-GAAAGAATCTTTAAAATTAGCAAGCTTTGAATGTTAGAAT------ATGATTCTTAATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44975975 148 + 71252344 AAGTTAAAGGAAAAATTAGGAAGTTTTGTTCAGATATCAAACTC----AAACTATGTTGAA----TAAACAA----GGATCAATGTATATTTTGTTAACCAA--ATGAACAC-----GGAATCTTTAAAATTAGCAAGCTTTGAATATTAAAGT------ATGATTCTTAATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 339949 156 - 1393929 AAGTTAAAGGAAAAATTAGGAAGTTTTGTTCAGATATCAAACTCAAATAAACTATGTTGAA----TAAACAA----GGATCAATGTATACTTTGTTAACCAA--ATGAATGCT-GAAAGAATCTTTAAAATTAGCAAGCTTTGAATATTAAAAT------ATGATTCTTAATT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1417206 156 - 15889662 AAGTTAAAGGAAAAATTACGAAGTTTTGTTTAGATATCAGACTCAAATAAACTATGTTGCA----TAAACAA----GGATCAATGTATATTTTGTTAATCAA--ATGAATGCT-GAAAGAATCTTTAAAATTAGCAAGCTTTGAATATTAAAAT------ATGATTCTTAATT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84827888 161 + 108143057 AAGTTGAAGGAAAAATTAGGAGATTTCATTTAGATATCAAACTCAAAGAAAC--TGTTGAA----TAAAGAATTGAGAATCGATGCTGATTTTGTTAACCAAGGACTAATGTTAAAAAAAATCTTTATGATTAGAAAGCTTTGAATATTAAAAT------ATGATTCTTAATT i micMur3.chr12 I 6 I 428 s proCoq1.NW_012147189v1 598226 157 - 10520994 AAGTTGAACGAAAAATTAGGAAATTTTATTTAGATATCAAACTCAAAGAAA-----TTGAA----TAAAGAATTGAGAATCAATGCTGATTTTGTTAACCAAGGACTAATGTT-AAAAGAATTTTTGTGATTAGAAAGCTTTGAATATTAAAAT------ACGATTCTTGATT i proCoq1.NW_012147189v1 I 17925 C 0 s otoGar3.GL873536 1298626 160 - 29863360 AAGTTGAAAGAAAACTTAGGAAATTTTAGTTAGATATCAAATTCAAAGAAA-----CTGAGAAACTAAAGAACTTAGACTCAATGC-----TTGTTAACCAAGGACTAATGTT-AAAAAAATATTTACAATTAGAAA--TCTGAATATTTAAAGGACCCAATGATTCTTAGTT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14314689 160 + 91889043 CAGTTGTGG--AAAAATAAGAAATTTTGTTCCATTACTAAACTCAAAGAAACAGTGTTGAA----TTGAGAGTCGACAATCAACGCTTATTTTGTTAACCAAGGACTAATGTT-AAGTGAATCTTTAGCATTAGCAAACTTTGAATGTTAAAAT------ATGATTCTTAATT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1233037 152 - 11655695 -AGTTGAGTA-AGAAGTAGGGGATTGTATTCAGATATCTAGCTCAAAGAAAC--AGTTGAA----TAAAGACTTGAGGATCAATGCTTACTTGATTAACCAATGACTAATGCT-AAAAGCATCTTAGA----AGCAGATGATACATGTCT--AT------ATGATTCTTAATT i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76447954 8190 + 120421639 I a score=276046.000000 s hg38.chr5_GL383530v1_alt 32082 19 + 101241 GAAgcagagactgctaatt s panTro5.chr5 20260833 19 + 181907262 GAAgcagagactgctaatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278124 19 + 183735486 GAAgcagagactgctaatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4763971 19 - 13748885 GAAgcagagactgctaatt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800761 19 - 163208435 GAAgcagagactgctaatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827122 19 - 180051392 GAAgcagagactgctaatt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87931536 19 - 181584905 GAAgcagagactgctaatt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1154445 19 - 8785636 GAAgcagagactgctaatt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1622679 19 + 27333823 GAAgcagagactgctaatt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1892779 19 - 91010382 GAAgcagagactgctaatt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2003802 19 + 5179401 GAAgcagagactgctaatt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7709685 19 - 21726897 GAAgcagagactgctaatt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530879 19 + 204313951 GAAgcagagactgctaatt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44976123 19 + 71252344 GAAgcagacactgctaatt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 340105 19 - 1393929 GAAgcagagactgctaatt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1417362 19 - 15889662 GAAgcagaaactgccaatt i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 598383 19 - 10520994 GAAGCAGAGACTACTAATT i proCoq1.NW_012147189v1 C 0 I 99 s otoGar3.GL873536 1298786 19 - 29863360 GAAGCAGAGACTGCTAATT i otoGar3.GL873536 C 0 I 12 s canFam3.chr3 14314849 10 + 91889043 ----CAA-----gctagtt i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1233189 18 - 11655695 -ATAGTgaaactgctagtt i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84828049 428 + 108143057 I e mm10.chr13 76447954 8190 + 120421639 I a score=352275.000000 s hg38.chr5_GL383530v1_alt 32101 36 + 101241 gtcct---------------------------------------------------ccagtatctagtctctcttttttaattcagt s panTro5.chr5 20260852 36 + 181907262 gtcct---------------------------------------------------ccagtatctagtctctctttttaaattcagt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278143 36 + 183735486 gtcct---------------------------------------------------ccagtatctagtctctcttttttaattcagt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4763990 35 - 13748885 gtcct---------------------------------------------------ccaatatctagt-gctcttttttaattcagt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800780 36 - 163208435 gtcct---------------------------------------------------ccagtatctagtctctcttttttaattcagt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827141 36 - 180051392 gtcct---------------------------------------------------ccagtatctaatctctctttttaaattcagt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87931555 36 - 181584905 gtcct---------------------------------------------------ccagtatctaatctctctttttaaattcagt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1154464 36 - 8785636 gtcct---------------------------------------------------ccagtatctaatctctctttttaaattcagt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1622698 36 + 27333823 gtcct---------------------------------------------------ccagtatctagtctctctttttaaattcagt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1892798 36 - 91010382 gtcct---------------------------------------------------ccagtatctaatctctctttttaaattcagt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2003821 36 + 5179401 gtcct---------------------------------------------------ccagtatctagtctctctttttaaattcagt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7709704 36 - 21726897 gtcct---------------------------------------------------ccagtatttagtctctctttttaaattcagt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530898 35 + 204313951 gtcct---------------------------------------------------ccactatctagtctctcttt-ttaatccagc i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 44976142 36 + 71252344 gtcct---------------------------------------------------ccactatctagtcgctctttgttaatccagt i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107830v1 340124 36 - 1393929 gtcct---------------------------------------------------ccactatctagtctctcttttttaatccagt i cebCap1.NW_016107830v1 C 0 I 1 s aotNan1.NW_018506370v1 1417381 36 - 15889662 gtcct---------------------------------------------------ccattatctagtctctctttcttaatccagt i aotNan1.NW_018506370v1 C 0 I 1 s otoGar3.GL873536 1298817 87 - 29863360 GTCCTGAAAAAAAGAGAGAAGCTATGCTGGGTTCATCAAAGCCTTAGACTCAGCTAGCAAAACCTGTTCTCTCTTTTGTTATTTAGG i otoGar3.GL873536 I 12 I 1 s canFam3.chr3 14314859 31 + 91889043 attgt---------------------------------------------------ccagaatctgttctttctt-----actcagt i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1233207 31 - 11655695 gtccc---------------------------------------------------tcagaatccgttctcttgttctcaat----- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84828049 428 + 108143057 I e proCoq1.NW_012147189v1 598402 99 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I a score=1490176.000000 s hg38.chr5_GL383530v1_alt 32137 119 + 101241 atagatataacagaatccctaatttttacctgggcacatggattcctggaataaagactttgttttctagttggcttgcagctaggcatagccatgtgac----taggttctagccaatggac s panTro5.chr5 20260888 119 + 181907262 atagatataaaagaatccctaatttttacctgggcacatggattcctggaataaagactttgttttctagttggcttgcagctaggcatagccatgtgac----taggttctagccattggac i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278179 119 + 183735486 atagatataacagaatccctaatttttacctgggcacatggattcctggaataaagactttgttttctagttggcttgcagctaggcatagccatgtgac----taggttctagccattggac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4764025 119 - 13748885 atagatataacagaatccctaatttttacctgggcacatggattcctggaataaagactttattttctagttggcttgcagctaggcatagccatgtgac----taggttctagccaatggac i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800816 119 - 163208435 atagatataagagaatccctaatttttacctgggcacatggattcctggaataaagactttgttttctagttggcttgcagctaggcatagtcatgtgac----taggttctagccaatggac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827177 119 - 180051392 ataggtataagagaatccctaatttttacctgggcacatggatccctggaataaagactttgttttctagttggcttgcccctagacacagccatgtgac----taggttctagccaatggac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87931591 119 - 181584905 ataggtataagagaatccctaatttttacctgggcacatggatccctggaataaagactttgttttctagttggcttgcccctagacacagccatgtgac----taggttctagccaatggac i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1154500 119 - 8785636 ataggtataagagaatccctaatttttacctgggcacatggatccctggaataaacactttgttttctagttggcttgcccctagacacagccatgtgac----taggttctagccaatggac i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1622734 119 + 27333823 atagatataagagaatccctaattcttacctgggcacatggattcctagaataaagactttgttttctaattggcttgcctctagacacagccaggtgac----taggttctagccaatggAC i cerAty1.NW_012002401v1 C 0 I 14 s chlSab2.chr4 1892834 119 - 91010382 atagatataagagaatccctaatttttacctgggcacatggatccctggaataaagactttgttttctagttggcttgcccctagacacagccatgtgac----taggttctagtcagtggac i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2003857 119 + 5179401 atagatataagaaaatccctaattcttacctgggcacatggattcctagaataaagactttgttttctaattagcttgcctctagacacagccatgtgac----taggttctagccaatggAC i manLeu1.NW_012103732v1 C 0 I 19 s colAng1.NW_012115488v1 7709740 118 - 21726897 atagatataagagaatccctaattcttacctgggcacatagattcctagaataaagacattgttttctggttggcttgcc-ctagacacagccatgtgac----gaggttctagccaatggac i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112530934 119 + 204313951 acatacataacagaatccctcaattttacctgggcatgtagattcctgggatgaagaccttgtttttcagttggcttgcagctaggcacagccatgtgac----taggttctggccaatgggc i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 44976179 119 + 71252344 aaagatataacagaatccctaagttttacctgagcatatagattcctgggataaagaccttgttttctagttggcttgcagctgggcacagccatgtgac----taggttctggccagtgggc i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107830v1 340161 119 - 1393929 aaagatataacagaatccctaagttttacctgggcatatagattcctgggatgaagaccttgttttctagttggcttgcagctaggcacagccatgtgac----taggttctggccaatgggc i cebCap1.NW_016107830v1 I 1 C 0 s aotNan1.NW_018506370v1 1417418 119 - 15889662 aaagatacaacagaatccctaagttttacctgggcatatagattcctgggatgaagaccttgttttctagttggcttgcagctaggcacagccatgtgac----taggttctggccaatgggc i aotNan1.NW_018506370v1 I 1 C 0 s proCoq1.NW_012147189v1 598501 119 - 10520994 ATAGACAtaatagaacccctcacttttacctgggcacatggatgcctggaataaagaccttattttccagtctgcttccaggtaggcatggccgtgtggc----caactcctggccaatgggc i proCoq1.NW_012147189v1 I 99 C 0 s otoGar3.GL873536 1298905 123 - 29863360 ATAGATATAACAGAGCCCCTAACCGTCTTTGAGGCATTTGGACAGCGGGAATTAAGACTTCCTTTTCCATTCTGCTTGCACTGAGGCATGGCCGTGTGGCTGAGTGAGTCCTGGCTGGTGGGC i otoGar3.GL873536 I 1 C 0 s canFam3.chr3 14314891 107 + 91889043 agagatgtacaagggcccccaatttctacat-ggtacctgggtgctaggaataaaggctttattttcccatcagctcacagcaagctgtgtccacatgac----aaagtcct----------- i canFam3.chr3 I 1 C 0 s dasNov3.JH570378 1233238 108 - 11655695 -----------agaatgtttagtttttacctgggtacattgatgcctagtataaagactttaattcccaatctgcttgcttctaggtgtggccatgtgac----caggtcctggccgatggcc i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84828049 428 + 108143057 I e mm10.chr13 76447954 8190 + 120421639 I a score=50462.000000 s hg38.chr5_GL383530v1_alt 32256 5 + 101241 tgcag s panTro5.chr5 20261007 5 + 181907262 tgcag i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278298 5 + 183735486 tgcag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4764144 5 - 13748885 tgcag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800935 5 - 163208435 tgcag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827296 5 - 180051392 tgcaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87931710 5 - 181584905 tgcaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1154619 5 - 8785636 tgcaa i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1892953 5 - 91010382 tgcaG i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7709858 5 - 21726897 tgcaG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112531053 5 + 204313951 tgcag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44976298 5 + 71252344 tgcag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 340280 5 - 1393929 tgcag i cebCap1.NW_016107830v1 C 0 I 10 s aotNan1.NW_018506370v1 1417537 5 - 15889662 tgcaG i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 598620 5 - 10520994 tgcaa i proCoq1.NW_012147189v1 C 0 I 1 s otoGar3.GL873536 1299028 5 - 29863360 TGCAA i otoGar3.GL873536 C 0 I 1 s canFam3.chr3 14314998 1 + 91889043 -g--- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1233346 5 - 11655695 tgcag i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84828049 428 + 108143057 I e mm10.chr13 76447954 8190 + 120421639 I e manLeu1.NW_012103732v1 2003976 19 + 5179401 I e cerAty1.NW_012002401v1 1622853 14 + 27333823 I a score=9555.000000 s hg38.chr5_GL383530v1_alt 32261 1 + 101241 t s panTro5.chr5 20261012 1 + 181907262 t i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278303 1 + 183735486 t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4764149 1 - 13748885 t i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800940 1 - 163208435 t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827301 1 - 180051392 t i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87931715 1 - 181584905 t i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1154624 1 - 8785636 t i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1892958 1 - 91010382 T i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7709863 1 - 21726897 T i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112531058 1 + 204313951 t i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44976303 1 + 71252344 t i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1417542 1 - 15889662 T i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14314999 1 + 91889043 T i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1233351 1 - 11655695 t i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84828049 428 + 108143057 I e proCoq1.NW_012147189v1 598625 1 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I e otoGar3.GL873536 1299033 1 - 29863360 I e cebCap1.NW_016107830v1 340285 10 - 1393929 I e manLeu1.NW_012103732v1 2003976 19 + 5179401 I e cerAty1.NW_012002401v1 1622853 14 + 27333823 I a score=54111.000000 s hg38.chr5_GL383530v1_alt 32262 4 + 101241 gtgg s panTro5.chr5 20261013 4 + 181907262 gtgg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278304 4 + 183735486 gtgg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4764150 4 - 13748885 gtgg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800941 4 - 163208435 gtgg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827302 4 - 180051392 gtgg i rheMac8.chr6 C 0 I 1 s macFas5.chr6 87931716 4 - 181584905 gtgg i macFas5.chr6 C 0 I 1 s macNem1.NW_012011400v1 1154625 4 - 8785636 gtgg i macNem1.NW_012011400v1 C 0 I 1 s cerAty1.NW_012002401v1 1622867 4 + 27333823 GTGG i cerAty1.NW_012002401v1 I 14 I 1 s chlSab2.chr4 1892959 4 - 91010382 GTGG i chlSab2.chr4 C 0 I 1 s colAng1.NW_012115488v1 7709864 4 - 21726897 GTGG i colAng1.NW_012115488v1 C 0 I 1 s calJac3.chr2 112531059 4 + 204313951 gcgg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44976304 4 + 71252344 gtgg i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1417543 4 - 15889662 GTGG i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 598626 4 - 10520994 GTGG i proCoq1.NW_012147189v1 I 1 I 1 s otoGar3.GL873536 1299034 4 - 29863360 GTGG i otoGar3.GL873536 I 1 I 1 s canFam3.chr3 14315000 4 + 91889043 TTGG i canFam3.chr3 C 0 I 3 s dasNov3.JH570378 1233352 4 - 11655695 gtgg i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84828049 428 + 108143057 I e mm10.chr13 76447954 8190 + 120421639 I e cebCap1.NW_016107830v1 340285 10 - 1393929 I e manLeu1.NW_012103732v1 2003976 19 + 5179401 I a score=-68432.000000 s hg38.chr5_GL383530v1_alt 32266 5 + 101241 ---ag-aga s panTro5.chr5 20261017 5 + 181907262 ---ag-aga i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278308 5 + 183735486 ---ag-aga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4764154 6 - 13748885 ---cgcagc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800945 6 - 163208435 ---tgcaac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827307 5 - 180051392 ----gcaac i rheMac8.chr6 I 1 C 0 s macFas5.chr6 87931721 5 - 181584905 ----gcaac i macFas5.chr6 I 1 C 0 s macNem1.NW_012011400v1 1154630 5 - 8785636 ----gcaac i macNem1.NW_012011400v1 I 1 C 0 s cerAty1.NW_012002401v1 1622872 5 + 27333823 ----ACAAC i cerAty1.NW_012002401v1 I 1 C 0 s chlSab2.chr4 1892964 5 - 91010382 ----GCAAC i chlSab2.chr4 I 1 C 0 s manLeu1.NW_012103732v1 2003995 5 + 5179401 ----ACAAC i manLeu1.NW_012103732v1 I 19 C 0 s colAng1.NW_012115488v1 7709869 5 - 21726897 ----ACAAC i colAng1.NW_012115488v1 I 1 C 0 s calJac3.chr2 112531063 5 + 204313951 ---cacaa- i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 44976308 5 + 71252344 ---cgcaa- i saiBol1.JH378106 C 0 I 1 s aotNan1.NW_018506370v1 1417547 5 - 15889662 ---CACAA- i aotNan1.NW_018506370v1 C 0 I 1 s proCoq1.NW_012147189v1 598631 4 - 10520994 ---CACA-- i proCoq1.NW_012147189v1 I 1 I 2 s otoGar3.GL873536 1299039 4 - 29863360 ---CACA-- i otoGar3.GL873536 I 1 I 2 s canFam3.chr3 14315007 2 + 91889043 ---TG---- i canFam3.chr3 I 3 C 0 s dasNov3.JH570378 1233356 5 - 11655695 acatg---- i dasNov3.JH570378 C 0 I 6 e micMur3.chr12 84828049 428 + 108143057 I e mm10.chr13 76447954 8190 + 120421639 I e cebCap1.NW_016107830v1 340285 10 - 1393929 I a score=1870821.000000 s hg38.chr5_GL383530v1_alt 32271 172 + 101241 agAAGGCAGgcagccatcagggactgctaggtggaagctgcgtgctgaggatggcaaagcaaccaggtagatggaacctgggtgcctgacctcatggggtgccatcccagacctgggctgatt-----acctccagtctttttatttgtt-------tgaa---agag-----a----aataaaTGATAGTATTTA s panTro5.chr5 20261022 172 + 181907262 agAAGGCAGgcagccatcggcgactgctaggtggaagccgcgtgctgaggatggcaaagcaaccaggtagatggaacctgggtgcctgacctcatggggtgccatcccagacctgggctgatt-----acctccagtctttttatttgtt-------tgaa---agag-----a----aataaaTGATAGTATTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278313 172 + 183735486 agAAGGCAGgcagccatcggcgactgctaggtggaagccgcgtgctgaggatggcaaagcaaccaggtagatggaacctgggtgcctgacctcatggggtgccatcccagacctgggctgatt-----acctccagtctttttatttgtt-------tgaa---agag-----a----aataaaTGATAGTATTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4764160 172 - 13748885 agaaggcaggcagccatcggggactgctaggt-gaagctgcgtgctgagg-tggc-aagcaaccaggtagatggaacctgggtgcctgacctcat-gggtgccatcccagacctgggctgatt-----acctccagtctttttatttgtt-------tgaa---agagaaataa----aATAAATGATAGTATTT- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53800951 172 - 163208435 agaaggcaggcagccatcggggactgttaggtggaagctgcgtgctgaggatggcaaagcaaccaggtagatgggacctgggtgcctgacctcatagggtgccatcccaggcctgggctgatt-----acctctagtctttttatttgtt-------tgaa---agag-----a----gataaaTGATAGTATTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827312 169 - 180051392 agaatgcaggcagtcatcttggactgttgggtggaggctgcgtgctgaggatagcaaagcaaccaggtagacggaacctgagtgcctgacatcatggggtgccagcccagacctgggctgatg-----acttccggtcttgttctttgtt-------tgaa---agag-----a----aataa---aTAATATTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87931726 169 - 181584905 agaatgcaggcagtcatcttggactgttgggtggaggctgcgtgctgaggatagcaaagcaaccaggtagacggaacctgagtgcctgacatcatggggtgccagcccagacctgggctgatg-----acctccggtcttgttctttgtt-------tgaa---agag-----a----aataa---aTAATATTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1154635 169 - 8785636 agaatgcaggcagtcatcttggactgttgggtggaggctgcgtgctgaggatagcaaagcaaccaggtagacagaacctgagtgcctgacatcatggggtgccagcccagacctgggctgatg-----acctccggtcttgttctttgtt-------tgaa---agag-----a----aataa---aTAATATTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1622877 172 + 27333823 AGAATGCAGgcagccatcttggactgttgggtggaggctgcgtgctgaggatagcaaagcaaccaggtagatggaacctgagtgcctgacatcatggggtgccagcccagacctgggctgatt-----acctccagtcttgttctttgtt-------tgaa---agag-----a----aataaaTGATAATATTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1892969 169 - 91010382 AGAATGCAGgcagccatcttggactgttgggtggaagctgcgtgctgaggatagcaaagcaaccaggtagacggaacctgagtgcctgacatcatggagtgccagcccagacctgggctgatt-----acctccggtcttgttctttgtt-------tgaa---agag-----a----aataa---aTAATATTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2004000 172 + 5179401 AGAATGCAGgcagccatcttggactgttgggtggaggctgcgtgctgaggatagcaaagcaaccaggtagatggaacctgagtgcctgacatcatggggtgccagtccagacctgggctgatt-----acctccagtcttgttctttgtt-------tgaa---agag-----a----aataaaTGATAATATTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7709874 172 - 21726897 AGAATGCAGgcagccatcttggactgttgggtggaggctgtgtgctgaggatagcaaagcagccaggtagatggaacctgagtgcctgacatcatggggtgccagcccagacctgggctgatg-----acctccggtcttgttcttcgtt-------tgaa---agag-----a----aataaaTGATAATATTTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112531069 172 + 204313951 agaatgcaggcaggtattttggactgtttggtgggagctgcgtgctgaggatggcaaagcaaccaggtagatggaacctcagtgcctaaccttatggggtgccattccagatctaggctgatt-----acctctagtcttgttctttgtt-------tgaa---agag-----a----aataaaTCATAGTGTTCA i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 44976314 171 + 71252344 agaatgcaggcagccgttttggactgtttggtgggagctgcctgctgatgacggcaaaacaaccaggtagatggaaccttggtgcctgacc-tatggggtgccatcccagacctaggctgatt-----acctctagtcttgttctttgtt-------tgaa---agag-----a----aataaatcatagtgttca i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107830v1 340295 172 - 1393929 AGAATGTgggcagccattttggactgtttggtgggagctgcctgctgaggacggcaaagcaaccaggtggatggaaactcggtgcctgaccttatggggtgccatcccagccgtaggctgatt-----acctctagtcttgttctttgtt-------tgaa---agag-----a----aataaaTCATAATGTTCA i cebCap1.NW_016107830v1 I 10 C 0 s aotNan1.NW_018506370v1 1417553 172 - 15889662 AGAATGCAGgcagccattttggactgtttggtgggagctgcatgctgaggatggcaaaacaaccaggtagatggaacctcggtgcctgaccttatggggtgccatcccagacctaggctgatt-----acctctattcctgttctttgtt-------tgaa---agag-----a----aataaaTCATAGTGTTCA i aotNan1.NW_018506370v1 I 1 C 0 s proCoq1.NW_012147189v1 598637 173 - 10520994 AGATTCTAGgcagccattttggactgggaggtggaagctgcatgctgaggg-ggcagaacagcaaggtggacagaaactgggtacctga-atcatggaatgccatcccacacctgggccaatg-----acctccggtcttttttcttttt-------tcaaaagagag-----a----aataaactgtaatgttta i proCoq1.NW_012147189v1 I 2 C 0 s otoGar3.GL873536 1299045 169 - 29863360 AGTTtc-aggcag-catgttggactaggaggaagaagcttccc-ctgaggg-gatgaagcaacaaggcagacagaaagcaggtg-ctga-ttcagggactgccatcccagactgggcctggta-----tcctccagtcttttttcttttt-------tcaaaagagag-----a----aataaacCCTAAAGTTTA i otoGar3.GL873536 I 2 C 0 s canFam3.chr3 14315009 134 + 91889043 ---ACAcaaacagccttc---gactgtgagggaggag-tgcatgctgaagatggcacaacagcaaagtagccagaaactgggtgcctggcaacatggaatgccataccagaccctTCCTGATGGTCACACCTCTGGTGTTA------------------------------------------------------- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1233367 180 - 11655695 ataatgca-gcagccatcttggattgggacatggatgctgcatgctggggttggccgagcaacagggtagacagagcc-gggtacctgacgtcatggaat-ctagaccaaatctggactgatg-----actgctattcttgattattgtcataattatgta---atgg-----attagaataacctcttgtggcta i dasNov3.JH570378 I 6 C 0 e micMur3.chr12 84828049 428 + 108143057 I e mm10.chr13 76447954 8190 + 120421639 I a score=2065068.000000 s hg38.chr5_GL383530v1_alt 32443 140 + 101241 ATCAGTTTATTTTCAGTTACTCCATCTAGACCCATTTTTAGGGTCTAGGGTT-ACTCTGACAGATACATAAAAGTGTTTTTCTTTTTGATCACTTGTAAAACAATTTTCTGTGTAAATAAA---TTCCTCAGGATAATAAAGTT s panTro5.chr5 20261194 140 + 181907262 ATCAGTTTATTTTCAGTTACTCCATCTAGACCCATTTTTAGGGTCCAGGGTT-ACTCTGACAGATATATGAAAGTGTTTTTCTTTTTGATCACTTGTAAAACAATTTTCTGTGTAAATAAA---TTCCTCAGGATAATAAAGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278485 140 + 183735486 ATCAGTTTATTTTCAGTTACTCCATCTAGACCCATTTTTAGGGTCCAGGGTT-ACTCTGACAGATATATAAAAGTGTTTTTCTTTTTGATCACTTGTAAAACAATTTTCTGTGTAAATAAA---TTCCTCAGGATAATAAAGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4764332 140 - 13748885 ATCAGTTTATTTTCAGTTACTCGATCTAGACCCATTTTTAGGGTCCAGGGTT-ACTCTGACAGATACATAAAAGTGTTTTTCTTTTTGATCACTTGTAAAACAATTTTCTGTGTAAATAAA---TTCCTCAGGATAATAAAGTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53801123 140 - 163208435 ATCAGTTTATTTTCAATTACTCGATCTAGACCCATTTTTAGGGTCCAGGGTT-ACTCTGACAGATACATAAAAGTGTTTTTCTTTTTGATAACTTGTAAAACAATTTTCTGCGTAAATAAA---TTCCTCAGGATAATAAAGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827481 140 - 180051392 ACCAGTTTATTTTCAGTTACTGGATCTAGACCCATTTTTAGGGTCCAGGGTT-ACTCTGACAGATACATCAAAGTGTTTTTCTTTTTGATCACTTGTAAAACAATTTTCTGCGTAAATAAA---TTCCTCAAGATAATGAAGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87931895 140 - 181584905 ACCAGTTTATTTTCAGTTACTGGATCTAGACCCATTTTTAGGGTCCAGGGTT-ACTCTGACAGATACATCAAAGTGTTTTTCTTTTTGATCACTTGTAAAACAATTTTCTGCGTAAATAAA---TTCCTCAAGATAATGAAGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1154804 140 - 8785636 ACCAGTTTATTTTCAGTTACTGGATCTAGACCCATTTTTAGGGTCCAGGGTT-ACTCTGACAGATACATCAAAGTGTTTTTCTTTTTGATCACTTGTAAAACAATTTTCTGCGTAAATAAA---TTCCTCAAGATAATGAAGTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1623049 140 + 27333823 ATCAGTTTATTTTCAGTTACTGGATCTAGACCCATTTTTAGGGTTCAGGGTT-ACTCTGACAGATACATCAAAGTGTTTTTCTTTTTGATCACTTGTAAAACAATTTTCTGTGTAAATAAA---TTCCTCAGGATAATAAAGTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1893138 140 - 91010382 ACCGGTTTATTTTCAGTTACTGGATCTAGACCCATTTTTAGGGTCCAGGGTT-ACTCTGACAGATACATCAAAGTGTTTTTCTTTTTGATCACTTGTAAAACAATTTTCTGTGTAAATAAA---TTCCTCAAGATAATGAAGTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2004172 140 + 5179401 ATCAGTTTATTTTCAGTTACTGGATCTAGACCCATTTTTAGGGTTCAGGGTT-ACTCTGACAGATACATCAAAGTGTTTTTCTTTTTGATCACTTGTAAAACAATTTTCTGTGTAAATAAA---TTCCTCAGGATAATGAAGTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7710046 134 - 21726897 ATCAGTTTATTTTCAGTTACTGGGTCTAGACCCATTTTTAGAGTCCAGGGTT-ACTCTGACAGATACATCAAAGTG------TTTTTGATCACTTGTAAAACAATTTTCTGTGTAAATAAA---TTCCTCAAGATAATAAAGTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112531241 140 + 204313951 ATCAGTTTATTTTCAGTTACTAAACCTAGACCCATTTTTAGGGTCCAGGGTT-ACTCTGACAGATACATCAAAGTGTTTTTCTTTGTGATCACTTGTAAAACAATTTTCTGTGTAAATAAA---TTCCTCAGGGTAATAAAGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44976485 140 + 71252344 gtcagtttattttcagttACTGAATCTAGACCCATTTTTAGGGTCCAGTGTT-ACTCTGACAGATACATCAAAGTGGTTTTCTTTTTGATCACTTGTAAAACAATTTTCTGTGTAAACAAA---TTCCTCAGGGTAATAAAGTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 340467 140 - 1393929 ATCAGTTTATTTTCAGTTACTGAATCTAGATCCGTTTTTAGGGTCCAGGGTT-ACTCTGACAGATACATCAAAGTGTTTTTCTTTTTGATCACTTGTAAAACAATTTTCTGTGTAAATAAA---TTCCTCAGGGTAATAAAGTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1417725 140 - 15889662 ATCAGTTTATTTTCAGTTACTGAATCTAGACCCGTTTTTAGGGTCCAGGGTT-ACTCTGACAGATACATCAAAGTGTTTTTCTTTTTGATCATTTGTAAAACAATTTTCTGTGTAAATAAA---TTCCTCAGGATAATAAAGTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84828477 141 + 108143057 ATCAGTTTATTTTCAATTACTGGATTTAGACCCATTTTTAGCATCTAGGGTTAACCCTGACAGATACATCAAAGTATTTTTCTTTTTAATCACTTCTAAAACAGTTGTCTGTGCAAATAAA---TCCCTTGGGACAATAAAGTT i micMur3.chr12 I 428 I 151 s proCoq1.NW_012147189v1 598810 141 - 10520994 atcagtttattttcagttACTGGATTTAGACACATTTTTAAGGTCTAGGGTTAACACTGACAGATACATCAAAGTATTTTTCCTTTTAAGCACTTGCAAAAGAATTGTCTGTGCAAGTAAA---TTCCTTGGGGTAATGAAGTT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1299214 137 - 29863360 ATCAGCTTATTTTCAGTTACTGAATTTAGACCCATTTTTAGGGTCTAGAGTTAATCCTGACAGATACATCAATGTGTTT----TTTTAATCACTTGTACAACAATTTTCCTTGTGAATAAA---TTCCTCAGGATAATAAGGTT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14315143 100 + 91889043 -------------------------------------------ACCAGAGTTAACTTTGGAAGACACATCAAATTCTTCTTC-TTTTGGTCATTTATGAGATGATTTTCTGTGCAAATAGATCTTTCCTCAGATTAATAAAATT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1233547 127 - 11655695 atcaacttattttcaggttttcag---------atacttggaggtgaagcta-ttcctgacaaatacaTCAAAATATTTTCCTTTTTGACCATTTTTGAAAGGATTTTGTGTG----TAGC---TTCCTACAGATAATAATGTT i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76447954 8190 + 120421639 I a score=1264116.000000 s hg38.chr5_GL383530v1_alt 32583 105 + 101241 TGACGGTATGTTCTCAGGTCCACAACAGCATT-----GAAAGACTGTTTTCCAGTAAGA-TTTCATGTGTTGGACTTCAGTGATTAGAGAATTTGGTTG----GGTAAGAACGGG s panTro5.chr5 20261334 105 + 181907262 TGACGGTATGTTCTCAGGTCCACAACAGCATT-----GAAAGACTGTTTTCCAGTAAGA-TTTCATGTGTTGGACTTCAGTGATTAGAGAATTTGGTTG----GGTAAGAACGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278625 105 + 183735486 TGACGGTATGTTCTCAGGTCCACAACAGCATT-----GAAAGACTGTTTTCCAGTAAGA-TTTCATGTGTTGGACTTCAGTGATTAGAGAATTTGGTTG----GGTAAGAACGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4764472 105 - 13748885 TGATGGTATGTTCTCAGGTCCACAACAGCATT-----GAAAGACTGTTTTCCAGTAAGA-TTTCATGTGTTGGACTTCAGTGATTAGAGAATTTGGTTG----GGTAAGAACGGG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53801263 105 - 163208435 TGATGGTATGTTCTCAGGTCCACAACAGCATT-----GAAAGACTGTTTTCCAGTAAGA-TTTCATGTGTCAGACTTCAGTGATTAGAGAATTTGGTTG----GGTAAGAACGGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827621 105 - 180051392 TGATGGTATGTTCTCAGATCCACAATAGCATT-----GAAAGTCTGTTTTCCAGTAAGA-TTTCATTTGTTGGACTTCAGTGATTAGAGGACTTGGTTG----GGTAAGAACAGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87932035 105 - 181584905 TGATGGTATGTTCTCAGATCCACAATAGCATT-----GAAAGTCTGTTTTCCAGTAAGA-TTTCATTTGTTGGACTTCAGTGATTAGAGGACTTGGTTG----GGTAAGAACAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1154944 105 - 8785636 TGATGGTATGTTCTCAGATCCACAATAGCATT-----GAAAGTCTGTTTTCCAGTAAGA-TTTCATTTGTTGGACTTCAGTGATTAGAGGACTTGGTTG----GGTAAGAACAGG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1623189 105 + 27333823 TGATGGTATGTTCTCAGATCCACAGTAGCATT-----GAAAGTCTGTTTTCCAGTACGA-TTTCATTTGTTGGACTTCAGTGATTAGAGGACTTGGTTG----GGTAAGAACAGG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1893278 105 - 91010382 TGATGGTATGTTCTCAGATCCACAATAGCATT-----GAAAGTCTATTTTCCAGTAAGA-TTTCATTTGTTGGACTTCAGTGATTAGAGGACTTGGTTG----GGTAAGAGCAGG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2004312 105 + 5179401 TGATGGTATGTTGTCAGATCCACAATAGCATT-----GAAAGTCTGTTTTCCAGTAAGA-TTTCATTTGTTGGACTTCAGTGATTAGAGGACTTGGTTG----GGTAAGAACAGG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7710180 105 - 21726897 TGATGGTATGTTCTTGGATCCACAATAGCATT-----GAAAGTCTGCTTTCCAGTAAGA-TTTCATTTGTTGGACTTCAGTGATTAGAGGATTTGGTTG----GGTAAGAACTGG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112531381 109 + 204313951 TGGTGATACATTCTCAGATCCACAACAACATT-----GAGAGACTGTTTTCCAGTAAGA-TTTCATGTGTCGGACTTCAGTGAGTAGAGGATTTGGTTGAACAGGTAAGAATGGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44976625 105 + 71252344 TGATATTACATTCTCAGATCCACAACAACATT-----GAGAGACTGTTTTCCAGTAAGA-TTTCATGTGTCGGAATTCAGTGAGTAGAGAAGTTGATTG----GGTAAGAACGGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 340607 102 - 1393929 TGATGATACGTTCTCAGATCC---GCAACATT-----GAGAGACTGTTTTCCAGTAAGA-TTTCATGCGTTGGACTTCAGTGAGTAGAGAATTTGGTTG----GGTAAGAACGGG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1417865 96 - 15889662 TGATGATACGTTCTCAGATCT----------T-----GAGAGACTGTTTTCCAGTAAGATTTTCATGTGTCGGACTTTAGTGAGTAGAGAATTTGGTTG----GATAAGAATGGG i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 598951 110 - 10520994 CAGTGGTATAGTCTCAGATCTGTAACAGCAGATCTATGAAATCCTCTTTTATAGTAAGA-GCTCATGTGTCTGATCTCAGTGATTAGAGAATGTGGTTG----GGTAGGAACAGG i proCoq1.NW_012147189v1 C 0 I 3 s otoGar3.GL873536 1299351 104 - 29863360 CAGTGGCATGTTCTCAGATCTG-AACAGTGGG-----GACAGCCTGTCTTTCGGTAAGA-GCTCCTGTGTCTAACTTCAGAGATTGGAGAATGTGGTGG----GGTGAGAATGAG i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14315243 101 + 91889043 CGGTGTCACGTTCTCAGATCAACAACAGCTTT-----GAAGGCCTGGTTTAC---AAGA-CCTCCTGTGTCAGACCTCAGTGATCAGAGAACTCAGATG----GCTAAGACAGG- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1233674 103 - 11655695 TTATGGATCATTCTCAGATCAACAACAGCACT-----GAAGCCCTGTTTTACAATAAGA-TTCC-TGTGTCAGACCTCAGCATGCAGAGAACTCACTTG----GGCGGATGAGG- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84828618 151 + 108143057 I e mm10.chr13 76447954 8190 + 120421639 I a score=13923.000000 s hg38.chr5_GL383530v1_alt 32688 1 + 101241 T s panTro5.chr5 20261439 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278730 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4764577 1 - 13748885 T i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53801368 1 - 163208435 T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827726 1 - 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87932140 1 - 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1155049 1 - 8785636 T i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1623294 1 + 27333823 T i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1893383 1 - 91010382 T i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2004417 1 + 5179401 T i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7710285 1 - 21726897 T i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112531490 1 + 204313951 T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44976730 1 + 71252344 T i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1417961 1 - 15889662 T i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1299455 1 - 29863360 T i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14315344 1 + 91889043 T i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1233777 1 - 11655695 T i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84828618 151 + 108143057 I e proCoq1.NW_012147189v1 599061 3 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I e cebCap1.NW_016107830v1 340709 0 - 1393929 C a score=70119.000000 s hg38.chr5_GL383530v1_alt 32689 7 + 101241 GAATGAG s panTro5.chr5 20261440 7 + 181907262 GAATGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278731 7 + 183735486 GAATGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4764578 7 - 13748885 GAATGAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53801369 7 - 163208435 GAATGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827727 7 - 180051392 GAATGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87932141 7 - 181584905 GAATGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1155050 7 - 8785636 GAATGAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1623295 7 + 27333823 GAATGAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1893384 7 - 91010382 GAATGAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2004418 7 + 5179401 GAATGAG i manLeu1.NW_012103732v1 C 0 C 0 s calJac3.chr2 112531491 7 + 204313951 GAATGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44976731 7 + 71252344 GAATGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 340709 7 - 1393929 GAATGAG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1417962 7 - 15889662 GAATGAG i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1299456 3 - 29863360 GAA---- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14315345 3 + 91889043 GAA---- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1233778 7 - 11655695 AAATGAG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84828618 151 + 108143057 I e proCoq1.NW_012147189v1 599061 3 - 10520994 I e mm10.chr13 76447954 8190 + 120421639 I e colAng1.NW_012115488v1 7710286 0 - 21726897 C a score=140720.000000 s hg38.chr5_GL383530v1_alt 32696 10 + 101241 CCTGGCTCCT s panTro5.chr5 20261447 10 + 181907262 CCTGGCTCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278738 10 + 183735486 CCTGGCTCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4764585 10 - 13748885 CCTGGCTCCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53801376 10 - 163208435 CCTGGCTCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827734 10 - 180051392 CCTGGCTCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87932148 10 - 181584905 CCTGGCTCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1155057 10 - 8785636 CCTGGCTCCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1623302 10 + 27333823 CCTGGCTCCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1893391 10 - 91010382 CCTGGCTCCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2004425 10 + 5179401 CCTGGCTCCT i manLeu1.NW_012103732v1 C 0 C 0 s calJac3.chr2 112531498 10 + 204313951 CCTGGCTCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44976738 10 + 71252344 CCTGGCTCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 340716 10 - 1393929 CCTGGCTTCT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1417969 10 - 15889662 CCTGGCTCCT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 599064 10 - 10520994 CCTGGCTTCT i proCoq1.NW_012147189v1 I 3 C 0 s otoGar3.GL873536 1299459 10 - 29863360 CCTGGTTTCT i otoGar3.GL873536 C 0 C 0 s dasNov3.JH570378 1233785 10 - 11655695 CCTGGCTCCT i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14315348 0 + 91889043 C e micMur3.chr12 84828618 151 + 108143057 I e mm10.chr13 76447954 8190 + 120421639 I e colAng1.NW_012115488v1 7710286 0 - 21726897 C a score=504265.000000 s hg38.chr5_GL383530v1_alt 32706 51 + 101241 G-AAAAAAGAGAAAAC--CCATGCT-GGATTCATCAAGACCTTACATTCAGCAAC s panTro5.chr5 20261457 51 + 181907262 G-AAAAAAGAGAAAAC--CCATGCT-GGATTCATCAAGACCTTACATTCAGCAAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278748 51 + 183735486 G-AAAAAAGAGAAAAC--CCATGCT-GGATTCATCAAGACCTTACATTCAGCAAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4764595 51 - 13748885 G-AAAAAAGAGAAAAC--CCATGCT-GGATTCATCAAGACCTTACATTCAGCAAC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53801386 42 - 163208435 ----------GAAAAC--CCATGCT-GGATTAATCAAGACCTTACATTCAGCAAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827744 51 - 180051392 G-AAAAAAGAGAAAAC--CCATGCT-GGATTCATCAAGACCTTATATTCAGCAAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87932158 51 - 181584905 G-AAAAAAGAGAAAAC--CCATGCT-GGATTCATCAAGACCTTATATTCAGCAAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1155067 51 - 8785636 G-AAAAAAGAGAAAAC--CCATGCT-GGATTCATCAAGACCTTATATTCAGCAAC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1623312 51 + 27333823 G-AAAAAAGAGAAAAC--CCATGCT-GGATTCATCAAGACCTTATATTCAGCAAC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1893401 51 - 91010382 G-AAAAAAGAGAAAAC--CCATGCT-GGATTCATCAAGACCTTATATTCAGCAAC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2004435 51 + 5179401 G-AAAAAAGAGAAAAC--CCATGCT-GGATTCATCAAGACCTTATATTCAGCAAC i manLeu1.NW_012103732v1 C 0 C 0 s calJac3.chr2 112531508 50 + 204313951 G-AAAAAAGAG-AAAT--CCAAGCT-GGATTGATCAAGACCTCGTATTCAGCAAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44976748 50 + 71252344 G-AAAAAAGAG-AAAT--CCAAGCT-GGATTGATCAAGACCTGGTATTCAGCAAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 340726 50 - 1393929 G-AAAAAAGAG-AAGT--CCAAGCT-GGATTGATCAAGACCTCGTATTCAGCAAC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1417979 50 - 15889662 G-AAAAAAGAG-AAAC--CCAAGCT-GGATTGATCAAGACCTCTTATTCAGCAAC i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 599074 41 - 10520994 GAAAAAAAGAGATAAT--CTATGCT-GGGCTCATCAAGACCTTA----------- i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1299469 48 - 29863360 GCACAAAAG----AAC--CTGAGCT-GGGTCTTTCAAGACCTTTTATTCAGCCAC i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76456144 53 + 120421639 g-aaagttgagaacactgCTCTATT-AGGCTCATAGAGAGCATGTGCTCAGCAAA i mm10.chr13 I 8190 C 0 s canFam3.chr3 14315348 37 + 91889043 ---------------C--CTACACC-AAACTCATCAAGACTTTATATTCAGCAAC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1233795 49 - 11655695 ---GAAAGGAGAGCAC--CTATCCCAAGGTTCGTGAAGACCTTAT-TTCAAGAAC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84828618 151 + 108143057 I e colAng1.NW_012115488v1 7710286 0 - 21726897 C a score=753726.000000 s hg38.chr5_GL383530v1_alt 32757 57 + 101241 ---TATTGTCTGTCACCTCAACAGATGAAACAA----CCAACA----------------------------------------------------------GGTATAGTG---------------------------GGAGCCAAGAGA s panTro5.chr5 20261508 57 + 181907262 ---TATTGTCTGTCACCTCAACAGATGAAACAA----CCAACA----------------------------------------------------------GGTATAGTG---------------------------GGAGCCAAGAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278799 57 + 183735486 ---TATTGTCTGTCACCTCGACAGATGAAACAA----CCAACA----------------------------------------------------------GGTATAGTG---------------------------GGAGCCAAGAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4764646 57 - 13748885 ---TATTGTCTGTCACCTGAACAGATGAAACAA----CCAACA----------------------------------------------------------GGTATAGTG---------------------------GGAGCCAAGAGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53801428 57 - 163208435 ---TATTGTCTGTCACCTGAACAGATGAAACAA----CCAACA----------------------------------------------------------GGTATAGTG---------------------------GGAGCCAAGAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827795 57 - 180051392 ---CATTGCCTGTCACCTGAACAAATGAAACAA----CGAACA----------------------------------------------------------GGTGTAGTG---------------------------GAAGCCAAGAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87932209 57 - 181584905 ---CATTGCCTGTCACCTGAACAAATGAAACAA----CGAACA----------------------------------------------------------GGTGTAGTG---------------------------GAAGCCAAGAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1155118 57 - 8785636 ---CATTGCCTGTCACCTGAACAAATGAAACAA----CGAACA----------------------------------------------------------GGTGTAGTG---------------------------GAAGCCAAGAGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1623363 57 + 27333823 ---CATTGCCTGTCACCTGAACAAATGAAACAA----CCAACA----------------------------------------------------------GGTGTAGTG---------------------------GAAGCCAAGAGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1893452 57 - 91010382 ---CATTGCCTGTCACCTGAACAAATGAAACAA----CCAATA----------------------------------------------------------GGTGTAGTG---------------------------GAAGCCAAGAGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2004486 57 + 5179401 ---CATTGCCTGTCACCTGAACAAATGAAACAA----CCAACA----------------------------------------------------------GGTGTAGTG---------------------------GAAGCCAAGAGA i manLeu1.NW_012103732v1 C 0 C 0 s calJac3.chr2 112531558 57 + 204313951 ---TATTGTCTGTCACCTGAACAAATGAAACAA----CCAATA----------------------------------------------------------GGTGTAGTG---------------------------GGAGCCAAGAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44976798 57 + 71252344 ---TATCATCTGTCACCTGAACAAATGAAACAA----CCAATA----------------------------------------------------------TGTGTAGTG---------------------------GGAGCCAAGAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 340776 57 - 1393929 ---TATCATCTGTCACCTGAACAAATGAAACAA----CCAATA----------------------------------------------------------GGTATAGTG---------------------------GGAGTCAAGAGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1418029 57 - 15889662 ---TATTGTCTGTCCCCTGGACAAATGAAACAA----CCAATA----------------------------------------------------------GATATAGTG---------------------------GGAGCCAAGAGA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84828769 61 + 108143057 ---TATTGTCTGTCACCTGaacaaatgaaacaaacaaacaaca----------------------------------------------------------aGTATATTG---------------------------GGAGCCAAGGGG i micMur3.chr12 I 151 C 0 s proCoq1.NW_012147189v1 599115 59 - 10520994 -----TTGTCCGTCACTTGAACAAATGAAACAAATAACCAGCA----------------------------------------------------------GCTATATTG---------------------------GGAGCCAAGAGG i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1299517 60 - 29863360 ---TATTGGCTGACACCAGAGTAAATGAAACAACTAGCAAACA----------------------------------------------------------GGGATATTG---------------------------GGA-TCAAGGGA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76456197 57 + 120421639 ---CATCCTGTGTCACCTAAACAAATGAAACCA----CTAATT----------------------------------------------------------GGTGTGGTG---------------------------AAAGCCAAAGAA i mm10.chr13 C 0 C 0 s canFam3.chr3 14315385 142 + 91889043 ---TATTGTCTGTCACCTGAACAAATGAAACAA----CCAACACGTGTATGAATATATTTTGGTGTTAAAATATTTCCAGGGGATCcctggatggctcagcggtttagtgcctgcgttcagcccaggacctggtcctggagtcccggga i canFam3.chr3 C 0 I 85 s dasNov3.JH570378 1233844 60 - 11655695 TTACATTGTCTGTCACCTGAAGAAATAAAACAA----CCAGCA----------------------------------------------------------GGTATATTG---------------------------GGGGCCAAGTGC i dasNov3.JH570378 C 0 C 0 e colAng1.NW_012115488v1 7710286 0 - 21726897 C a score=7853347.000000 s hg38.chr5_GL383530v1_alt 32814 526 + 101241 GAATACATACGTTTTGAC----------------ATTAAA----ATGTTTTGAT-ATT-AAACATGAGGCTAAATTTTGCAAAAGGTACAGGTTAGAGCATAAAAGAGAGAAGCATGG-------TAGTGGT--GATgtca-----------gtctgctttattctgtcactacca-ttacagactgtatttataaccacatatct---catgtgccccatttgtcaccatgggaagtagagGACAAACTCAAAGCCACCTGCAACCCCAAGCACAAGCCCCTATAAGATGC-CTTCTTTCTGTTTCGGTCCCTGTGCAAAACCTGCCCAGACAGATGGCTCT-GCCCAAGTGGGAGGCAAATTTAGGCTTATG-AAAATGCTTAGGATGAAACAGGTTTACTTGGAATACTCTTCCTAAATGGAACTCTGTGTTCTTTCGAAGTTACAGACATACCAAACTGAAC-TTTTCATTGGCACTTTTTAATGA--AATCACAGTGGTTTTTCTTTACTGTTTATTGTAAGTATTATATTTATGTGACTACCAATCCCTATTCAGAGCACATTGGCATGTTA s panTro5.chr5 20261565 528 + 181907262 GAATACATACGTTTTGAC----------------ATTAAA----ATGTTTTGAT-ATT-AAACATGAGGCTAAATTTTGCAAAAGGTACAGGTTAGAGCATAAAAGAGAGAAGCATGG-------TAGTGGT--GATGTCA---------ATGTCTGCTTTATTCTGTCACTACCA-TTACAGACTGTATTTATAACCACATACCT---CATGTGCCCCATTTGTCACCGTGGGAAGTAGAGGACAAACTCAAAGCCACCTGCAACCCCAAGCACAAGCCCCTATAAGATGC-CTTCTTTCTGTTTCGGTCCCTATGCAAAACCTGCCCAGACAGATGGCTCT-GCCCAAGTGGGAGGCAAATTTAGGCTTATG-AAAATGCTTAGGCTGAAACAGGTTTACTTGGAATACTCTTCCTAAATGGAACTCTGTGTTCTTTCGAAGTTACAGACATACCAAACTGAAC-TTTTCATTGGCACTTTTTAATGA--AATCGCAGTGGTTTTTCTTTCCTGTTTATTGTAAGTGTCATATTTATGTGACTACCAATCCCTCTTCTGAGCACATTGGCATGTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20278856 528 + 183735486 GAATACATACGTTTTGAC----------------ATTAAA----ATGTTTTGAT-ATT-AAACATGAGGCTAAATTTTGCAAAAGGTACAGGTTAGAGCATAAAAGAGAGAAGCATGG-------TAGTGGT--GATGTCA---------ATGTCTGCTTTATTCTGTCACTACCA-TTACAGACTGTATTTATAACCACATATGT---CATGTGCCCCATTTGTCACCGTGGGAAGTAGAGGACGAACTCAAAGCCACCTGCAACCCCAAGCACAAGCCCCTATAAGATGC-CTTCTTTCTGTTTCGGTCCCTATGCGAAACCTGCCCAGACAGATGGCTCT-GCCCAAGTGGGAGGCAAATTTAGGCTTATG-AAAATGCTTAGGCTGAAACAGGTTTACTTGGAATACTCTTCCTAAATGGAACTCTGTGTTCTTTCGAAGTTACAGACATACCAAACTGAAC-TTTTCATTGGCACTTTTTAATGA--AATCGCAGTGGTTTTTCTTTCCTGTTTATTGTAAGTGTCATATTTATGTGACTACCAATCCCTCTTCAGAGCACATTGGCATGTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4764703 529 - 13748885 GAATACATATGTTTTGAC----------------ATTAAA----ATGTTTTGAT-ATT-AAACATGAGGCTAAATGTTGCAAAAGGTACAGGTTAGAGCATAAAAGAGAGAAGCATGG-------TAGTGGT--GATGTCA---------ATGTCTGCTTTATTCTGTCACTACCA-TTACAGACTGTGTTTATAACCACATATCT---CATGTGCCCCATTTGTCACCATGGGAAGTAGAGGACAAACTCAAAGCCACCTGCAACCCCAAGCACAAGCCCCTATAAGATGC-CTTCTTTCTGTTTCGGTCCCTATGCAAAACCTGCCCAGACAGATGGCTCT-GCCCAAGTGGGAGGCAAATTTAGGCTTATGAAAAATGCTTAGGATGAAACAGGTTTACTTGGAATACTCTTCCTAAATGGAACTCTGTGTTCTTTCGAAGTTACAGACATACCAAACTGAAC-TTTTCATTGGCACTTTTTAATGA--AATCACAGTGGTTTTTCTTTCCTGTTTATTGTAAGTGTTATATTTATGTGACTACCAATCCCTCTTCAGAGCACATTGGCATGTTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53801485 523 - 163208435 GAATACATGTGTTTTGAC----------------ATTAAA----ATGTTTTGAT-ATT-AAACATGAGGCTAAATTTTGCAAAAGGTACAGGTTAGAGCATAAAAGAGAGAAGCATGA-------TAGTGGT--GATGTCA---------ATGTCTGCTTTATTCTGTCACTACCA-TTATAGAC--TATTTATAACCACATATCT-CACATGTGCCCCATTTGTCACCATGGGAAGTAGAGGACAAACTCAAAGCCACCTGCAACCCCAAGCACAAG-CCCTGTAAGATGC-CTTCTTTCTGTTTCGGTCCGTATGCAAAACCTGCCCAGACAGATGGCTCT-GCCCAAGTGGGAGGCAAATTTAGGCTTATG-AAAATGCTTAGGATGAAACAGGTTTACTTGGAATACTCTTCCTAAATGGAACTCTGTGTTCTTTCAAAGTTACAGACATACCAAACTGAAC-TTTTCATTGGCACTTTTTAATGA--ATTCACAGTGGTTTTTCTTTCCTGTTTATT----GTGTTATATTTATGTGACTACCAATCCCTCTTCAGAGCACATTGGCATGTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87827852 527 - 180051392 GAATACATATGTTTTGAT----------------ATTAAA----ATGTTTTGAT-ATT-AAACATGGAGCTAAATTTTGCAAAAGGTGCAGGTTAGAGCATAAAAGAGAGAAGCATGG-------TAGTGGT--GATGTCA---------ATGTCTGCTTTATACTGTCACTACCA-TTACAGACTATATGTATAACCACATATCT-CACATGTGCCCCATTTGTCACCATGGGAAGTAGAGGACAAACTCAAAGCCACGTGCAACCCCAAGCACAAG-CCCTATAAGATGC-CTTCTTTCTGTTTCGGTCCGTATGCAAAACCTGCCCAGACAGATGGCTCT-GCCCAAGTGGGAGGCAAATTTAGGCTTAGG-AAAATGCTTAGGATAAAACAGGTTTACCTGGAATACTCTTCCTAAATGGAACTC--TGTTCTTTCGAAGTTACAGACATACCAATCTGAAC-TTTTCATTGGCACTTTTTAATGA--AATTGCCGTGATTTTTCTTTCCTATTTATTATAAGTGTTATAGTTATGTGACTCCCAATCCCTCTTCAGAGCACACTGGCATGTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87932266 527 - 181584905 GAATACATATGTTTTGAT----------------ATTAAA----ATGTTTTGAT-ATT-AAACATGGAGCTAAATTTTGCAAAAGGTGCAGGTTAGAGCATAAAAGAGAGAAGCATGG-------TAGTGGT--GATGTCA---------ATGTCTGCTTTATACTGTCACTACCA-TTACAGACTATATGTATAACCACATATCT-CACATGTGCCCCATTTGTCACCATGGGAAGTAGAGGACAAACTCAAAGCCACGTGCAACCCCAAGCACAAG-CCCTATAAGATGC-CTTCTTTCTGTTTCGGTCCGTATGCAAAACCTGCCCAGACAGATGGCTCT-GCCCAAGTGGGAGGCAAATTTAGGCTTAGG-AAAATGCTTAGGATAAAACAGGTTTACCTGGAATACTCTTCCTAAATGGAACTC--TGTTCTTTCGAAGTTACAGACATACCAATCTGAAC-TTTTCATTGGCACTTTTTAATGA--AATTGCCGTGATTTTTCTTTCCTATTTATTATAAGTGTTATAGTTATGTGACTCCCAATCCCTCTTCAGAGCACACTGGCATGTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1155175 527 - 8785636 GAATACATATGTTTTGAT----------------ATTAAA----ATGTTTTGAT-ATT-AAACATGGAGCTAAATTTTGCAAAAGGTGCAGGTTAGAGCATAAAAGAGAGAAGCATGG-------TAGTGGT--GATGTCA---------ATGTCTGCTTTATACTGTCACTACCA-TTACAGACTATATGTATAACCACATATCT-CACATGTGCCCCATTTGTCACCATGGGAAGTAGAGGACAAACTCAAAGCCACGTGCAACCCCAAGCACAAG-CCCTATAAGATGC-CTTCTTTCTGTTTCGGTCCGTATGCAAAACCTGCCCAGACAGATGGCTCT-GCCCAAGTGGGAGGCAAATTTAGGCTTAGG-AAAATGCTTAGGATAAAACAGGTTTACCTGGAATACTCTTCCTAAATGGAACTC--TGTTCTTTCGAAGTTACAGACATACCAATCTGAAC-TTTTCATTGGCACTTTTTAATGA--AATTGCCGTGATTTTTCTTTCCTATTTATTATAAGTGTTATAGTTATGTGACTCCCAATCCCTCTTCAGAGCACACTGGCATGTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1623420 527 + 27333823 GAATACATATGTTTTGAC----------------ATTAAA----ATGTTTTGAT-ATT-AAACATGAAGCTAAATTTTGCAAAAGGTGCAGGTTAGAGCATAAAAGAGAGAAGCGTGG-------TAGTGGT--GATGTCA---------ATGTCTGCTTTATACTGTCACTACCA-TTACAGACTATATGTATAACCACATATCT-CACATGTGCCCCATTTGTCACCATGGGAAGTAGAGGACAAACTCAAAGCCACATGCAACCCCAAGCACAAG-CCCTATAAGATGC-CTTCTTTCTGTTTCGGTCCGTATGCAAAACCTGCCCAGACAGATGGCTCT-GCCCAAGTGGGAGGCAAATTTAGGCTTAGG-AAAATGCTTAGGATAAAACAGGTTTACTTGGAATACTCTTCCTAAATGGAACTC--TGTTCTTTCGAAGTTACAGACATACCAATCTGAAC-TTTTCATTGGCACTTTTTAATGA--AATTGCAGTGATTTTTCTTTCCTATTTATTATAAGTGTTATAGTTATGTGACTCCCAATCCCTCTTCAGAGCACACTGGCATGTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1893509 527 - 91010382 GAATACATATGTTTTGAT----------------ATTAAA----ATGTTTTGAT-ATT-AAACATGAAGCTAAATTTTGCAAAAGGTGCAGGTTAGAGCATAAAAGAGAGAAGCGTGG-------TAGTGGT--GATGTCA---------ATGTCTGCTTTATACTGTCACTACCA-TTAGAGACTATATGTATAACCACATATCT-CACATGTGCCCCATTTGTTACCGTGGGAAGTAGAGGACAAACTCAAAGCCACGTGCAACCCCAAGCACAAG-CCCTATAAGATGC-CTTCTTTCTGTTTCGGTCCGTATGCAAAACCTGCCCAGACAGATGGCTCT-GCCCAAGTGGGAGGCAAATTTAGGCCTAGG-AAAATGCTTAGGATAAAACAGGTTTACTTGGAATACTCTTCCTAAATGGAACTC--TGTTCTTTCGAAGTTACAGACATACCAATCTGAAC-TTTTCATTGGCACTTTTTAATGA--AATTGCAGTGATTTTTCTTTCCTATTTATTATAAGTGTTATATTTATGTGACTCCCAATCCCTCTTCAGAGCACACTGGCATGTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2004543 527 + 5179401 GAATACATATGTTTTGAC----------------ATTAAA----ATGTTTTGAT-ATT-AAACATGAAGCTAAATTTTGCAAAAGGTGCAGGTTAGAGCATAAAAGAGAGAAGCGTGG-------TAGTGGT--GATGTCA---------ATGTCTGCTTCATACTGTCACTACCA-TTACAGACTATATGTATAACCACATATCT-CACATGTGCCCCATTTGTCACCATGGGAAGTAGAGGACAAACTCAAAGCCACGTGCAACCCCAAGCACAAG-CCCTATAAGATGC-CTTCTTTCTGTTTCGGTCGGTATGCAAAACCTGCCCAGACAGATGGCTCT-GCCCAAGTGGGAGGCAAATTTAGGCTTAGG-AAAATGCTTAGGATAAAACAGGTTTACTTGGAATACTCTTCCTAAATGGAACTC--TGTTCTTTCGAAGTTACAGACATACCAATCTGAAC-TTCTCATTGGCACTTTTTAATGA--AATTGCAGTGATTTTTCTTTCCTATTTATTATAAGTGTTATAGTTGTGTGACTCCCAATCCCTCTTCAGAGCACACTGGCATGTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7710286 527 - 21726897 GAATACATTTGTTTTGAT----------------ATTAAA----ATGTTTTGAC-ATT-AAACATGAAGCTAAATTTTGCAAAAGGTACAGGTTAGAGCATAAAAGAGAGAAGCATGG-------TAGTGGT--GATGTCA---------ATGTCTGCTTTATACTGTCACTACCA-TTACAGACTATATTTATAAACACATATCT-CACATGTGCCCCATTTGTCACCATGGGAAGTAGAGGACAAACTCAAAGCCACCTGCAACCCCAAGCACAAG-CCCTATAAGATGC-CTTCTTTCTGTTTCGGTCTGTATGCAAAACCTGCCCAGACAGATGGCTCT-GCGCAAGTGGGAGGCAAATTTAGGCTTAGG-AAAATGCTTAGGATAAAACAGGTTTACTTGGAATACTCTTCCTAAATGGAACTC--TGTTCTTTCGAAGTTACAGACATACCAATCTGAAC-TTTTCATTGGCACCTTTTAATGA--AATTGCAGTGGTTTTTCTTTCCTATTTATTATAAGTGTTATATTTATGTGACTCCCAATCCCTATTCAGAGCACATTGGCATGTTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112531615 525 + 204313951 GAATACATATGCTTTGAC----------------ATTAGA----ATGTTTTGAT-ATT-AAACATGAGGCTAAATTTTGCAAAAGGTACAGGTGAGAGCATAAA--AGAGAAGCATGA-------TAGTGGT--AATGTCA---------ATGTCTGCTTTATTCTGTCTCTACCG-TTACAGACTG-ATTTGTAACCACATATCT-CACATGTGCCCCATTAGTCACCAAGGGAAGTAGAGGACAAACTCAAAGCCAC-TACAACCCCAAGCAGAAG-CCCCATAAGATGC-CTTCTTTCTGTTTCGGTCCATATGCAAAATCTGCCCAGACAAATGGCTTT-GCCTGACTGGGAGGCAAATTTAGGCTTATA-AAAATGCTTAGGATGAAACAGGTTTACTTGGAATACTCTTCCTAAATGGAACTCTGTGTTCTTTCAAAGTTACAGACATGCCAGCCCGAAC-TTTTCATTGGCACTTTTTAATGA--AATCCTAGTGATTTTTCATTCCTGATTACTATAAGTGTTATATTTATGTGATTACCAGTCCCTCTTCAGAGCACATTAGCATGTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44976855 526 + 71252344 GAATACGTATGCTTTGAC----------------ATTAGA----ATGTTTTGAT-ATT-AAACATGAGGCTAAATTTTGCAAAAGGTACACGTGAGAGCATAAAAGAGAGAAGCATGA-------TGGTGAT--AATGTCA---------ATGTCTGCTTTATTCTGTCTCTACCG-TTACAGACTGTATTTATAACCGCATATCT-CACATGTGCCCCATTAGTCACCAAGGGAGGTAGAGGACAAACTCAAAGCCAC-TTCAGCCCCAAGCACAAG-CCCCACAAGATGC-CTTATTTCTGTTTCGGTCCATATGCAAAACCTGCCCAGACAAATGGCTCT-GCCCAACTGGGAGGCAAATTTAGGCTTATA-AAAATGCTTAGGATGAAACAGGTTTACTTGGAATACTCTTCCTAAATGGAACTC--TGTTCTTTCAAAGTTGCAGGCATACCAGCCTGAAC-TTTTCATTGGCACTTTTTAATGA--AATCCTAGTGATTGTTCATTCCTGTTTATTAGAAGTGTTATATTTACGTGATTACCAATCCCTCTTCAGAGCACATTAGCATGTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 340833 545 - 1393929 GAATATGTATGCTTTGACATTAGAATGTTTTGATATTAGA----ATGTTTTGAT-ATT-AAACATGAGGCCAAATTTTGCAAAAGGTGCAGGTGAGAGCACAAAAGAAAGAAGCATGA-------TAGTGGT--AATGTCA---------ATGTCTgctttattctgtctctaccg-ttacagactgtatttataaccgcatatct-cacatgtgccccattagtcaccaggggaggtagagGACAAACTCAAAGCCAC-TTCAACCCCAAGCACAAG-CTCCATAAGATGC-CTTATTTCTGTTTCGGTCCATATGCAAAACCCGCCCAGACAAATGGCTCT-GCCTGACTGGGAGGCAAATTTAGGCTTATA-AAAATGCTTAGGATGAAACAGGTGTACATGGAATACTCTTCCCAAATGGAATTCTGTGTTCTTTCAAAGTTACAGACATACCAGCCTGAACTTTTTCATTGGTACTTTTTAATGA--AATCCTAGCTATTTTTCATTCCTGTTTATTATAAGTGTTATGTTTATGTGATTACCAGTCCCTCTTCAGAGCACATTAGCATGTTA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1418086 524 - 15889662 GAATATGTATGCTTTGAC----------------ATTAGA----ATGTTTTGAT-ATT-GAACATGAGGCTAAATTTTGCAAAACGTACAGGTGACAGCATAAAAGAGGGAAGCATGA-------TAGTGG-----TGTCC---------ATGTCTgctttattctgtctctacca-ttacagactgtatttataaccacatatct-cacatgtgccccattagtcaccaaggggagtagagGACAAACTCAAAGCCTC-TTCAACATCAAGCACAAG-CCCCATAAGATGC-CTTTTTTCTCTTTCGGTCCATATGCAAAACCTGCCCAGACAAATTGCTCT-GCCCAACTGGGAGGCAAATTTAGGCTTATA-AAAATGCTTAGGATGAAACAGGTTTACTTGGAATACTCTTCCTAAATGGAACTCTGTGTTCCTTCAAAGTTACAGACATACCAGCCTGAAC-TTTTCATTGGCACTTTTTAATGA--AAT-CTAGTGATTTTTCATTCCTGTTTATTATAAGTGTTATATTTATGTGATTACCAATCCCTCTTCAGAGCACATTAGCATGTTA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84828830 533 + 108143057 GAATAAATATATTTTAAC----------------ATT-AA----ATGTTTTGAT-ACTAAAAAATGTGTTTAAATTTTCCAAAAGGCACAGGTTAGAGCATAAAAGATAGAAGTATGG-TG---ATGGTGGTGAGATGTCA---------AGATCTATATTATTCTGTCACCACCATTTACGGACTATATTTCTAACTGTGTGTCT-CACATGTGCCCCATTAGTCGCCATGGGAAGTAAAAGACAAACTCGAAGCCACCTGCAACCCCAAGCACAGG-CCCCATAAGATGC-ATTATTTCTGTTTTGGTCCATATGCAAAATCTGTCCAGACAGATGGCTCT-GCCCAAGTGGGAGGCAAATTTAGGCTTATA-AAAATGCTGAGGATGAAGCAGGTTTACTTGGAATAAGCTTCCTAAATGGAACTTTGTGTTCTTTCAAAGTTATAGATATACAAACCTGAAC-TTCTCACTGGCACTTTTTAATGA--AATCATAATGAGTTTT-TTTCCTGTTTATTATAAGTTTTATATTTATGTGACTGTCAG-CCCCCTTCAAAGCACTTTGGCATGTTA i micMur3.chr12 C 0 I 71 s proCoq1.NW_012147189v1 599174 532 - 10520994 GAATAAATATATTTTAAC----------------ATTAAA----ATATTTTGATAATTAAAAAATGTGTTTAAATTTTCCAAAAGGCACAGGTTAGAGCATAATAGATAGAAGCATGG-TG---ATGGTGGT--GATGTCA---------ACATCTACATtattctgtcaccacta-tcacagactgtacttctaaccatgtatct-cacatgtgccccattagtcaccgtgggaAGTAAAAGACAAACTCGAAGCCACCTGCAACCCCAAGCACAGG-CCCCATAAGATGC-ATTATTTCTGTTTTGGTCCATATGCAAAATCTGTCCAGACAGATGGCTCT-GCCCAAGTAGGAGGCAAATTTAGGCTTATA-AAAATGCTGAGGATGAAGCAGGTTTACTTGGAATAAGCTTCCTAAATGGAACTTTGTGTTCTTTCAAAGTTATAGATATACAAACCCAAAT-TTCTCATCGGTACTTTTTAATGA--AATCATAATGAGTTTT-TTTCCTGTTTATTATAAGTTTTATATTTATATGACTATCAG-CCCCCTTCAAAGCATGTTGGCATGTTA i proCoq1.NW_012147189v1 C 0 I 6 s otoGar3.GL873536 1299577 490 - 29863360 GAATAAATATATTTTGAC----------------AGTAAA----ATGTTCTGATAATAAAAAAAGGTGTCTAAATTTTCC-AGAGGCA----------CATAAA----AGAAGCATGG-TG----TGGTGGT--GACGGCG---------ACACCTACTTTGTTCTATCA-------CTGCAGACTGTCTTTCTAACCACATGTCT-GACATGTGCCCCCTTGGTCACCATGGAAAGT----GACAGACTCGGAGCCACCT---------AGC-CAGG-CCCCATAAGATGC-ATTCTTTCTGTTTTGGTCCATAAGC-AAATCTGTCCAGACAGGTGGCTCTCGCCCAAGTGGGAGGCAAATTCAGGCTTATA-AAAATGCTTGGGATAAAGGAGGCTCAGCTGGAATGAGCTTCCTAAGTGG-ACTCTGTGTTCTCTCAAAGCTAAAGGCAGACAAACCTGAAC-TGCTCACTGGCACTTTCTAAAGA--AATC-----GAGGTTT-TATCCTGTTCGTTACAAATTTTATACTTATGTGACTATCAG-CCTCCCTCAAAGCATGTTGACATATTA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76456254 499 + 120421639 ----GACTGTGTTTTAGG----------------ACTGAA----GTGATTTAAT-ATC-AAAGATGGGTGTAAAGTTTGTAAAGGATGCAGGCTAGAGCACATGAGATAGAAGCATAG-------TAGTG-T--GATGT-------------ATGTGCTGTGTTCTCTCACTGTTA-CTGCAGAC------TCTAACC--ATATCTGCACATGTGCCCTGTTAGTCATCCTTGGAAGCAGAAGGAAAACTCAAAGTCAACTAGAAT-----------G-TCCAGCAAGAAGA-TTTATTTCTGTTTCTATCCATATGCAAAATCTGAGTGGACAGATGGGTCT-GTCCA--TGAGAAACAAATTTAGGCTCA-A-AAACTGCTTAGGATGGGGTAAGTTGACTTGCAATAAACT--CCAAATGGAATTTTATATTATTTAGTTATTATAAACATACAAACCTGAAC-TTTTTGTTGACATTTTAAAATGACTCATGATAGTTCCTCGCCCTACCCATTTATGGCAGGCATCATATTTTTGAGAATACCACTTTCTTTTCAAATAATGTTGGTATGTTA i mm10.chr13 C 0 C 0 s canFam3.chr3 14315612 527 + 91889043 gaataaataaataaaatc----------------tttaaaaaaTATATTTCCAT-ATT-AAAAATGTATCTAAATTTTCTAAAGGGCACAGGTCAGAATATAGAAGACAGAAGTGTGC-TGCTGCTGGTGGT--GGTGTCAACACCTTTGATGTCTGCTTTAGTCCGTCACCACTA-TTACAGATGGCGTCT-CAGATGCATATCT-CAGATGTACCCCATTGGTCACCATGGGGAGTAGAGGACAAACTCAAAGCCACCTGCACCCCTACACACAGC-TCTC--AAGAAGC-ATTATTTCTGTTTTGGTCCATATGCAAAATCTGTCCAGACAGATGGCTTT-GTCTAAATGGGAGATAAATTTAGTCTTATA-AAAATACTTTGGATAA---AGATTTA-----------CTTCCTAAATGGAATCTTGTATTCTTTCAAAATTATAAACATAAAAACCCAAAC-TTCTCATTGACACTTTCTAATGA--AATCATAG----TTTCCCCCCCTGTTTATTATAAGCTTTGTATTTATGTGACTGCCAGTCCCCTTTCAAAGCATATTGGCATGTTA i canFam3.chr3 I 85 C 0 s dasNov3.JH570378 1233904 498 - 11655695 ---TAAGACAGTTCCAAG--------------------AA----ATGTTTTGAT-ATG-AAAAAAGGGCCTGCGTTTTCCCAAAGGAGCAGGC---AGGATTGAGTTCCGAGGCCCGAGCG----TGGTGGC--GCTGACA---------GTGTCTTCTTTCTCCTGTTGCCACAG-TCACGGACGGCGTGCCTAACCACGTGTCT-CATGTGAACCCTGTCAGTCATCGTGGGAGGTAGAGGACAAACCCAAAGCCACCTGCAACCCCAAGCACAGA-CCTCCTAAAATAAGACAATTTCTGTTTTGGTCCATATGCAAAATCTGCCCAGACAGATGGCTCT-GCCCAAGTGGGAAACAAATTTAGGCTTAT--CAAATGTGTAGGATGAAGTAGGTTTACTTGGAACAAGCTTTCTAAATGGAACTTTGCACT-TTTAAAAGTTATCAGCATACAAACCTGAAC-TTCTCACTGGCACTTTCTAATGA--GATC-TGGTG--CTCTGTTTCCCTTCTACTTT-------------------TTACCAGGCTCCCTTCAAAGCAC-TTGACTCAATA i dasNov3.JH570378 C 0 C 0 a score=600377.000000 s hg38.chr5_GL383530v1_alt 33340 43 + 101241 GTTTGTTTCAAAGAAA--------------TGAAAACAATTCTGGCTGGCATGTTTT s panTro5.chr5 20262093 43 + 181907262 GTTGGTTTCAAAGAAA--------------TGAAAACAATTCTGGCTGGCATGTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20279384 43 + 183735486 GTTGGTTTCAAAGAAA--------------TGAAAACAATTCTGGCTGGCATGTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4765232 43 - 13748885 GTTGGTTTCAAAGAAA--------------TGAAAACAGTTGTGGCTGGCATGTTTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53802008 43 - 163208435 GTTGGTTTCAAAGAAA--------------TGAAAACAATTCTGGCTGGCATGTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87828379 43 - 180051392 GCTGGTTTCAAGGAAA--------------TGAAAACAATTCTGGCTGGCATGTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87932793 43 - 181584905 GCTGGTTTCAAGGAAA--------------TGAAAACAATTCTGGCTGGCATGTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1155702 43 - 8785636 GCTGGTTTCAAGGAAA--------------TGAAAACAATTCTGGCTGGCATGTTTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1623947 43 + 27333823 GCTGGTTTCAAAGAAA--------------TGAAAACAATTCTGGCTGGCATGTTTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1894036 43 - 91010382 GTTGGTTTCAAAGAAA--------------TGAAAACAATTCTGGCTGGCATGTTTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2005070 43 + 5179401 GCTGGTTTCAAAGAAA--------------TGAAGACAATTCTGGCTGGCATGTTTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7710813 43 - 21726897 GTTGGTTTCAAAGAAA--------------TGAAAACAATTCTGGCTGGCATGTTTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112532140 43 + 204313951 GCCGATTTCAAAGAAA--------------GGAAAATAATTCTGGCTGGCATGTTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44977381 43 + 71252344 GCTGATTTCAAATAAA--------------TGAAAATAATTCTGGCTGGCATGTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 341378 42 - 1393929 GCTGATTTCAAAGAAA--------------TGAAAATAATTCAGGCTGGCATG-TTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1418610 43 - 15889662 ACTGATTTCAAAGAAA--------------TGAAAATAATTCTGGCTGGCATGTTTT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 599712 43 - 10520994 GTTGATTTTAAAAAAT--------------TAACAATGATTCTGGTTGGCTTGTTTT i proCoq1.NW_012147189v1 I 6 C 0 s otoGar3.GL873536 1300067 43 - 29863360 GTTGATTTTAAAAAAC--------------TAAAAACAATTCTGGTTGGCATGGTTT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76456753 56 + 120421639 -GTGGTTTTAATACAAATTATTCTGCTTTGTAACATCTATTCTGGACAACATCTTTT i mm10.chr13 C 0 I 248 s canFam3.chr3 14316139 43 + 91889043 GCTGATTTTGAAGAGT--------------TGAAAATGCTTCTGACTGCTATGTTTT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1234402 43 - 11655695 ATCGATTTTGGAGAAT--------------TGTAAATGGTTCTGGCTAGCATGTATT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84829363 71 + 108143057 I a score=282077.000000 s hg38.chr5_GL383530v1_alt 33383 22 + 101241 TTACCTGTTGGTTGTAGCATCT s panTro5.chr5 20262136 22 + 181907262 TTACCTGTTGGTTGTAGCATCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20279427 22 + 183735486 TTACCTGTTGGTTGTAGCATCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4765275 22 - 13748885 TTACCTGTTGGTTGTAGCATCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53802051 22 - 163208435 TTACCTGTTGGTTGTAGCATCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87828422 22 - 180051392 TTACATGTTGGTTGTAGCATCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87932836 22 - 181584905 TTACATGTTGGTTGTAGCATCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1155745 22 - 8785636 TTACATGTTGGTTGTAGCATCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1623990 22 + 27333823 TTACATGTTGGTTGTAGCATCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1894079 22 - 91010382 TTACATGTTGGTTGTAGCATTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2005113 22 + 5179401 TTACATGTTGGTTGTAGCATCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7710856 22 - 21726897 TTACATGTTGGTTGTAGTATTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112532183 22 + 204313951 TTACATGTTGGTTGTAGCATCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44977424 22 + 71252344 TTACATGTTGGTTGTAGCATCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 341420 22 - 1393929 TTACATGTTGGTTGTAGCATCT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1418653 22 - 15889662 TTACATGTTGGTTGTGGCATCT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 599755 21 - 10520994 T-ATATACTGGTCGTGGCATTT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1300110 20 - 29863360 T--CGTACTGGTTGTAGCATTT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14316182 20 + 91889043 -TACATGCTGGTTGTAGCACT- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1234445 20 - 11655695 -TGAATA-TGGTTTTAACATCT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84829363 71 + 108143057 I e mm10.chr13 76456809 248 + 120421639 I a score=264129.000000 s hg38.chr5_GL383530v1_alt 33405 15 + 101241 ATGCTGGACAGCATA s panTro5.chr5 20262158 15 + 181907262 ATGCTGAACGGCATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20279449 15 + 183735486 ATGCTGGACGGCATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4765297 15 - 13748885 ATGCTGGACAGCATA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53802073 15 - 163208435 ATGCTGGACAGCATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87828444 15 - 180051392 ATGCTGGACAGCATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87932858 15 - 181584905 ATGCTGGACAGCATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1155767 15 - 8785636 ATGCTGGACAGCATA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1624012 15 + 27333823 ATGCTGGACAGCATA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1894101 15 - 91010382 ATGCTGGACAGCATA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2005135 15 + 5179401 ATGCTGGACAGCATA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7710878 15 - 21726897 ATGCTGGACAGCATA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112532205 15 + 204313951 ATGCTGGACAGCATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44977446 15 + 71252344 ATGCTGGACAGCATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 341442 15 - 1393929 ATGCTGGACAGCATA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1418675 15 - 15889662 ATGCTGGACAGCATA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84829434 15 + 108143057 ATGCTGGACAGCATA i micMur3.chr12 I 71 C 0 s proCoq1.NW_012147189v1 599776 15 - 10520994 ATGCTAGACAGTGTA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1300130 15 - 29863360 GTGCCGGACAGCGTA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14316202 15 + 91889043 ATGCTGGACAATGTA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1234465 15 - 11655695 ATGTTGGACAGGATA i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76456809 248 + 120421639 I a score=355370.000000 s hg38.chr5_GL383530v1_alt 33420 29 + 101241 TTTCGGACACTCT-TTAAAAAAGTCATTTT s panTro5.chr5 20262173 29 + 181907262 TTTCGGACACTCT-TTAAAAAAGTCATTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20279464 29 + 183735486 TTTCGGACACTCT-TTAAAAAAGTCATTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4765312 29 - 13748885 TTTCGGACACTCT-TTAAAAAAGTCATTTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53802088 29 - 163208435 TTTCGGACACTCT-TTAAAAATGTCATTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87828459 29 - 180051392 TTTTGGACACTCT-TTAAAAAAGTCATTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87932873 29 - 181584905 TTTTGGACACTCT-TTAAAAAAGTCATTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1155782 29 - 8785636 TTTTGGACACTCT-TTAAAAAAGTCATTTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1624027 29 + 27333823 TTTCGGACACTCT-TTTAAAAAGTCATTTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1894116 29 - 91010382 TTTCGGACACTCT-TTAAAAAAGTCATTTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2005150 29 + 5179401 TTTCGGACACTCT-TTTAAAAAGTCATTTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7710893 29 - 21726897 TTTCGGACACTCT-TTAAAAAAGTCATTTT i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 44977461 29 + 71252344 TTTTGGCCACTCT-TTAAGAATGCCATTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 341457 29 - 1393929 TTTTGGCCACTCT-TTAAAAGTGTCATTTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1418690 28 - 15889662 TTTTGGCCACTCT-TTAA-AATGTCATTTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84829449 29 + 108143057 TCTTGGGCACTCT-GAAAACATGACATTTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 599791 29 - 10520994 TCTTGGGCACTCT-TAAAACGTGACATTTT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1300145 29 - 29863360 TTTTGGGCACTCA-TAAAACGTGTCATTTT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14316217 29 + 91889043 TTTTGGGCTCTCT-AAAAGAATGTCACTTT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1234480 30 - 11655695 TTTTGAGCACCATAGGAAAAATGTCATTTT i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76456809 248 + 120421639 I e calJac3.chr2 112532220 0 + 204313951 C a score=1635440.000000 s hg38.chr5_GL383530v1_alt 33449 111 + 101241 CTTTTTCCCATAATGTTAGAAATGTTTTGGTCTTA-ttttaagcactttaggtc----------------ctttttgcgtaa--ttttttctgcctttactga--tgtttgcaacacgtctcaatttagtac s panTro5.chr5 20262202 111 + 181907262 CTTTTTCCCTTAATGTTAGAAATGTTTTGGTCTTA-ttttaagcactttaggtc----------------ctttttgcataa--ttttttctgcctttactga--tgtttgcaacacgtctcaatttagtac i panTro5.chr5 C 0 C 0 s panPan2.chr5 20279493 111 + 183735486 CTTTTTCCCTTAATGTTAGAAATGTTTTGGTCTTA-ttttaagcactttaggtc----------------ctttttgcataa--ttttttctgcctttactga--tgtttgcaacacgtctcaatttagtac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4765341 111 - 13748885 CTTTTTCCCATAATGTTAGAAATGTTTTGGTCTTA-ttttaagcactttaggtc----------------ctttttgcataa--ttttttctgcctttactga--tgtttgcaacacgtctcaatttagtac i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53802117 111 - 163208435 CTTTTTCCCATAATGTTAGAAATgtttcggtctta-ttttaagcactttaggtc----------------ctttttgcataa--ttttttctgcctttactga--tgtttgcaacacgtctcaatttagtac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87828488 111 - 180051392 CTTTTTTCCATAATGTTAGACATGTTTCGttctta-ttttaagcactttaggtc----------------ctttttgcatat--ttttttctgcctttactga--tgtttgcaacacatctcaatttagtac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87932902 111 - 181584905 CTTTTTTCCATAATGTTAGACATGTTTCGttctta-ttttaagcactttaggtc----------------ctttttgcatat--ttttttctgcctttactga--tgtttgcaacacatctcaatttagtac i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1155811 111 - 8785636 CTTTTTTCCATAATGTTAGACATGTTTCGttctta-ttttaagcactttaggtc----------------ctttttgcatat--ttttttctgcctttactga--tgtttgcaacacatctcaatttagtac i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1624056 111 + 27333823 CTTTTTTCCATAATGTTAGAAATGttttgttctta-ttttaagcactttaggtc----------------ctttttgcatat--ttttttctgcctttattga--tgtttgcaacacatctcaatttagtac i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1894145 111 - 91010382 CTTTTTTCCGTAATGTTAGAAATGTTTTGttctta-ttttaagcactttacgtc----------------ctttttgcatat--ttttttctgcctttactga--tgtttgcaacacatctcaatttagtac i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2005179 111 + 5179401 CTTTTTTCTATAATGTTAGAAATattttgttctta-ttttaagcactttaggtc----------------ctttttgcatat--ttttttctgcctttactga--tgtttgcaacacatctcaatttagtac i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7710922 111 - 21726897 CTTTTTCCCATAATGTTAGAAATGttttgttctta-ttttaagcactttaggtc----------------ctttttgcatat--ttttttctgcctttactga--tgtttgcaacacatctcaatttagtac i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 44977490 111 + 71252344 CTTTTTCTCATAATGTTAGAAATGTTTTGGTCTTA-TTTTAAGCACTTTAGGTC----------------GTTTTTGCATAA--TTTGTTCTGCCTTTGCTGA--TGTTTGCAACACGTCTCAATTTAGTAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 341486 111 - 1393929 CTTTTTCTCATAATGTTAGAAATGTTTTGGTCTTA-ttttaagcactttaggtc----------------gtttttgcataa--tttattctgcctttactga--tgtttgcaacacgtcttaatttagtac i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1418718 111 - 15889662 CTTTTTCTCATAATGTTAGAAATGTTTTGGTCTTA-ttttaagcactttaggtc----------------atttttgcataa--tttgttctgcctttactga--tgtttgcaacacgtctcaatttagtac i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84829478 106 + 108143057 CTTTTCCCCATAAAGTTAAAAATG------TCTTG-TTTTAGGCACGTtaggtc----------------ttttttgcataa-atttttcctgcctttactga--tgtttgcaacacttctcaatttagtac i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 599820 106 - 10520994 CTTTTCCCCATAAAATTAAAAATG------TCTTG-ttttaagcacgttaggtc----------------ttttttgcataa-atttttccttcctttactga--tgtttgcaacacttctcaatttagtac i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1300174 107 - 29863360 CTTTTCCCTATAAAGATAAAAATG------TCTTG-TTTTAAACACATTAGGTC----------------TTTTTTGCATAATTTTTTTCCTGCCTTTACTAA--TGTTTGCAACACTTCTCAATTTAGTGC i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76457057 127 + 120421639 cTTTCTTCCACAAGGTTAAAAATGCTTTGCTCCTA-TTTTAACCATACTATACCTTCTTTTTTTTTTTTTTTTTTTGTATAA--TTCTTCCTCTCTTTGGTGAAGTGGTTTCGACACTTCT--GTTCAATGC i mm10.chr13 I 248 C 0 s canFam3.chr3 14316246 112 + 91889043 CTTTCTCCCATAAAGTTAAAAATGTTTTGCTTTTA-TTTAAAGCATGTTAGGTT---------------TTTTTTTGCATaa--tttttcctgcctttactga--tgtttgcaacacttctcaatttagtac i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1234510 115 - 11655695 CATTTCCTGGTAAAGTTAAAAATGTTTTTCCCTTATTTTTAAGCATGTTGGGCC-------------TGTTTTTTTTCAGAA--TTTTTCTTGCTTTTACTGA--TGTTTGCAACACTTCTTGGTTTAGTGC i dasNov3.JH570378 C 0 C 0 e calJac3.chr2 112532220 0 + 204313951 C a score=4755174.000000 s hg38.chr5_GL383530v1_alt 33560 298 + 101241 catctgtgattccatcagcttgctatttactgccttttctaaatcattaaggg-agatgttaTGGCAATAATGCTTTATTTACATGTCACTT-TACAGGAAGCTCAAAGTATATTTGTAGGAGTTACTGT-----ATTAAACAATGGCACCCATGTGAGGTAAAGAATTTCACAGTT----AGCATTTCAACATTAGCATGACTTATTTAAAATAGAAAAAAATATTGCCATGACTCTGGATTTGAAGCATG--TATGTTATTAGGTATTCTTGTTGTTCTGAGCTATTAAGGAAGTTGTTGCAGTAGCTT s panTro5.chr5 20262313 297 + 181907262 catctgtgattccatcagcttgctatttactgccttttctaaatcattaaggg-aggtgttaTGGCAATAATGCTTTATTTACATGTCACTT-TACAGGAAGCTCAAAGTATATTTGTAGGAGTTACTGT-----ATTAAACAATGGCACCCATGTGAGGTAAAGAATTTCACAGTT----AGCATTTCAACATTAGCATGACTTATTTAAAATAGAAAAAAA-ATTGCCGTGACTCTGGATTTGAAGCATG--TCTGTTATTAGGTATTCTTGTTGTTCTGAGCTATTAAGGAAGTTGTTGCAGTAGCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20279604 298 + 183735486 catctgtgattccatcagcttgctatttactgccttttctaaatcattaaggg-agatgttaTGGCAATAATGCTTTATTTACATGTCACTT-TACAGGAAGCTCAAAGTATATTTGTAGGAGTTACTGT-----ATTAAACAATGGCACCCATGTGAGGTAAAGAATTTCACAGTT----AGCATTTCAACATTAGCATGACTTATTTAAAATAGAAAAAAATATTGCCGTGACTCTGGATTTGAAGCATG--TCTGTTATTAGGTATTCTTGTTGTTCTGAGCTATTAAGGAAGTTGTTGCAGTAGCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4765452 298 - 13748885 catctgtgattccatcagcttgctatttactgccttttctaaatcattaaggg-agatgttaTGGCAATAATGCTTTATTTACATGTCACTT-TACAGGAAGCTCAAAGTATATTTGTAGGAGTTACTGT-----ATTAAACAATGGCACCCATGTGAGGTAAAGAATTTCACAGTT----AGCATTTCAACATTAGTGTGACTTATTTAAAATAGAAAAAAATATTGCCGTGACTCTGGATTTGAAGCATG--TCTGTTATTAGGTATTCTTGTTGTTCTGAGCTATTAAGGAAGTTGTTGCAGTAGCTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53802228 298 - 163208435 catctgtgattccatcagcttgctatttactgccttttctaaatcattaaggg-agatgttATGGCAATAATGCTTTATTTACATGTCACTT-TACAGGAAGCTCAAAGAATATTTGTAGGAGTTACTGT-----ATTAAACAATGGCACCCATGTGAGGTAAAGAATTTCACAGTT----AGCATTTCAACATTAGCGTGACTTATTTAAAATAGAAAAAAATATTGCCGTGACTCTGGAGTTGAAGCATG--TCTGTTATTAGGTATTCTTGTTGTTCTGAGCTATTAAGGAAGTTGTTGCAGTAGCTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87828599 296 - 180051392 catctgtgattccatcagcttgctatttactgtcttttctaagtcattaaggg-agatgttaTGGCAATAATGCTTTATTTACATGTCACTT-TACAGGAAGCTCAAAGTATATTTGTAGGAGTTACTGT-----ATGAAACAATGGCACCCATGTGAGGTAAAGAATTTCACAGTT----AGCATTTCAACATCAGCGTGACTTACGTAAAATAGAAAAAAATATTGCCGTGACTC--GAGTTGAACCGTG--TCTGTTATTAGGTATTCTTGTTGTTCTGAGCTATTAAGGAAGTTGTTGCAGTAGCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87933013 296 - 181584905 catctgtgattccatcagcttgctatttactgtcttttctaagtcattaaggg-agatgttaTGGCAATAATGCTTTATTTACATGTCACTT-TACAGGAAGCTCAAAGTATATTTGTAGGAGTTACTGT-----ATGAAACAATGGCACCCATGTGAGGTAAAGAATTTCACAGTT----AGCATTTCAACATCAGCGTGACTTACGTAAAATAGAAAAAAATATTGCCGTGACTC--GAGTTGAACCGTG--TCTGTTATTAGGTATTCTTGTTGTTCTGAGCTATTAAGGAAGTTGTTGCAGTAGCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1155922 296 - 8785636 catctgtgattccatcagcttgctatttaccatcttttctaagtcattaaggg-agatgttaTGGCAATAATGCTTTATTTACATGTCACTT-TACAGGAAGCTCAAAGTATATTTGTAGGAGTTACTGT-----ATGAAACAATGGCACCCATGTGAGGTAAAGAATTTCACAGTT----AGCATTTCAACATCAGCGTGACTTACTTAAAATAGAAAAAAATATTGCCGTGACTC--GAGTTGAACCGTG--TCTGTTATTAGGTATTCTTGTTGTTCTGAGCTATTAAGGAAGTTGTTGCAGTAGCTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1624167 296 + 27333823 catctgtgattccatcagcttgctatttactgtcttttctaagtcattaaggg-agatgttaTGGCAATAATGCTTTATTTACATGTCACTT-TACAGGAAGCTCAAAGTATATTTGTAGGAGTTACTGT-----ATGAAACAATGGCACCCATGTGAGGTAAATAATTTCACAGTT----AGCATTTCAACATCAGTGTGACTTACTTAAAATAGAAAAAAATATTGCCGTGACTC--GAGTTGAACCGTG--TCTGTTATTAGGTATTCTTGTTGTTCTGAGCTATTAAGGAAGTTGTTGCAGTAGCTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1894256 296 - 91010382 catctgtgattccatcagcttgctatttactgtcttttctaagtcattaaggg-agatgttaTGGCAATAATGCTTTATTTACATGTCACTT-TACAGGAAGCTCAAAGTATATTTGTAGGAGTTACTGT-----GTGAAACAATGGCACCCATGTGAGGTAAAGAATTTCACAGTT----AGCATTTCAACATTAGCGTGACTTACTTAAAATAGAAAAAAATATTGCCGTGACTC--GAGTTGAACCGTG--TCTGTTATTAGGTATTCTTGTTGTTCTGAGCTATTAAGGAAGTTGTTGCAGTAGCTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2005290 296 + 5179401 catctgtgattccatcagcttgctatttactgtcttttctaagtcattaaggg-agatgttaTGGCAATAATGCTTTATTTACATGTCACTT-TACAGGAAGCTCAAAGTATATTTGTAGGAGTTACTGT-----ATGAAACAATGGCACCCATGTGAGGTAAATAATTTCACAGTT----AGCATTTCAACATCAGTGTGACTTACTTAAAATAGAAAAAGGTATTGCCGTGACTC--GAGTTGAACCGTG--TCTGTTATTAGGTATTCTTGTTGTTCTGAGCTATTAAGGAAGTTGTTGCAGTAGCTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7711033 296 - 21726897 catctgcgattccatcagcttgctatttgctgtgttttctaagtcattaaggg-agatattaTGGCAATAATGCTTTATTTTCATGTCACTT-TACAGGAAGCTCAAAGTATATTTGTAGGAGTTACTGT-----ATTAAACAATGGCACCCATGTGAGGTAAAGAATTTCACAGTT----AGCATTTCAACATTAGCGTGACTTACCTAAAATAGAAAAAAATATTGCCGTGACTG--GAGCTGAAGCATG--TCTGTTATTAGGTATTCTTGTTGTTCTGAGCTATTAAGGAAGTTGTTGCAGTAGCTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112532220 297 + 204313951 CATCTGTAATTCCATCAGCTTGCTATTTACTGCCTTTTCTAGGTCATTAAGGG-AGATGTTATGGCAATAATGCTTTATTTACATGTCACTT-TACGGGAAGTTCAAAGTATATTTGTAGGAGTTACTGT-----ATTAAACAATGGCACCCATGCGAGGTACAGAATTTCACAGTT----AGCATTTCAACATTAGCGTGACAT-TTAAAAATAGAAAAAATTATTGCCGTGACTCTGGCATTGAAGCATG--TCTGTTATTCGGTATTCTTGTTGTTCTGAGATACTAAGGAAGTTGTTGCAGTAGCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44977601 295 + 71252344 CATCTGTGATTCCATCAGCTTGCTATTTACCGCCTTTTCTAAGTGATTAAGGG-AGATGTTATGGCAATAATGCTTTATTTACATGTCACTT-TACAGGAAGCTCAAAGTATATTTGTAGGAGTTACTGT-----ATTAAACAATGGCACACCTGTGAGGTAAAGAATTT--CAGTT----AGCATTTCAACATTAGCGTGACAT-TTAAAAATAGAAAAAATTATTGCCATGACTCTGGTGTTGAAACATG--TGTGTTATTAGGTATTCTTGTTGTTCTGAGCTATTAAGGAAGTTGTTGCAGTAGCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 341597 293 - 1393929 catctgtgattccatcagcttgctatttactgccttttctaaatcattaaggg-agatgttaTGGCAATAATGCTTTATTTACATGTCACTT-TACAGGAAGCTCAAAGTATATTTGTAGGAGTTACTAT-----ATT----AATGGCACCCATGTGAGGTAAAGAATTTCACAGTT----AGCATTTCAACATTAGCGTGACAT-TTAAAAATAGAAAAAATTATTGCCGTGACTCTGGTGTTGAACCATG--TCTGTTATTAGGTATTCTTGTTGTTCTGAGCTATTAAGGAAGTTGTTGCAGTAGCTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1418829 297 - 15889662 catctgtgattccatcagcttgctatttactgccttttctaagtcattaaggg-agatgttaTGGCAATAGTGCTTTATTTGCATGTCACTT-TACAGGAAGCTCAAAGTATATTTGTAGGAGTTACTGT-----ATTAAACAATGGCACCCATGTGAGGTAAAGAATTTCACAGTT----AGCATTTCAACATTAGCGTGACAT-TTAAAAATAGAAAAAATTATTGCCGTGACTCTGGCGTTGAAGCATG--TCTGTTATTAGGTATTCTTGTTGTTCTGAGCTGTTAAGGAAGTTGTTGCAGTAGCTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84829584 303 + 108143057 catctgtgattccatcagcttgctatttactgtcttttctagatcattaaggg-agatgttaTGGCAATAATGCTTTATTTACATGTCACTTTTCCAGGAAGCCCAAAGTATATTTGTAGGAGTTATTGT-----ATTAAACAATGCTACCCATGTGGGGTGAAGAACTGTACAGTTAGAGAGCATTTCAACACTATTATGAATTATTTTACGTAGAAAAAAATATTTTCATGCTTTGCGAGTTTAAGTGTG--TCTGTTATTAGATAGTTGTGTTGCTCCGAGCCAGTAAGGAAGTTGTTGCAGTGCTTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 599926 302 - 10520994 catctgtgattccatcagcttgctatttactgtcttttctagatcattaaggg-agatgttaTGGCAATAATGCTTTATTTACATGTCACTTTTCCAGGAAGCTCAAAGTATATTTGTAGGAGTTATTGT-----ATTAAACAATGGTACCCATATGAGGTGAAGAATTGTACAGTTAGAGAGCA-TTCAACACTAGTATGAATTATTTTACATAGAAAAAAATATTTTCATGCTTCGGGAGTTTAAGCATG--CCTGTTATTAGGTATTCGTGTTGCTCTGAGCCAGTAAGGAAGTTGTTGCAGTACTTT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1300281 299 - 29863360 CATCTGTGATTCCATCAGCTTGCTATTTACTGCCTTCTCTAGATCATTAAGGA-GGACCTTATGGCAATAATGTTCTATTTACATGTCACTTCCCCAGGAAGCTGGAAGGATATTTGTAGGAGTTATTGT-----ATTAAACAATGGTACCCAAGTGAGGTAAAGAATTTCACAGTTGGAGAGTGTGTCCACATTAGTATGAGTTATTCTCCGTAGGAAAG-----CTCGGTGATTCTGGGGCAGGAGCACAGTTTTCTTATCAGGTAGGCGCGTTGCTCCGAGCCATTAAGGAAGTTGTTGCC-TGCCTT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76457184 284 + 120421639 CATCTGTGA----ATCAGCTAGCTATTTACT-TGCTGGCTGGATCATTAGGGGAAAATGTTATGGCAATAATGCTTTCTTTACATGCCACTTACACAGGAAGCTGAAAGTGCACTGTATTAAGTGACTTCTACAAAGTAAGTGGTGGCACCCATAGGAAGCAAACGATTGTATATTTAGAGAGCATCTCAGCCTTAACATGGTTTCTCTTAAAGAGGAAAGAGT----CCAGGATGCTGGGCTTCAGCCTTGAGATTGAAACTAGGTGTCCTTGGTGT---------------GGGTTGTTG---TAGATC i mm10.chr13 C 0 C 0 s canFam3.chr3 14316358 292 + 91889043 catctgtgaatccatcagcttgctatttactgcctcttttagatcattaaggg-agatgttATGGCAATAATGCTTTATTTACATGTCACTTTCCCAGGAAACTCAGAGTATATTTATA-AAGTTATTGT-----ATTAAACAATGGCACCCATGTGAGGTAAAGAATTTTATAGTT----AGCATTTCAATACCAGTATGACTTATTTAAAATAGAAGGAAATATTTCAGGGATAGTAGAGTCTAA----G--TATGTTATTAGGTATTCTTGTTGCTTTGAGCCA-TAAGGAAGCTGTTGCAGT-GCTT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1234625 291 - 11655695 CATCTGTGAATCCATCAGCTGGCTATTTGCTGCCTCTTCTAGATCATTAAGGG-AGAGGTTATGATAATAA---------TACATTCTACTTTCCCAGGAAGCTCAAATTATATTTACAGGAGGTATTTT-----ATTAAATAATGGCACCCATTTGAAGTAAGGAATTTTTCAGTTAGAGAACATTTCATTGTTAATATGAC--ATTTTCAATAGAAGAAAATATTTCTGTGATTT-GTGGTTTAAACATA--TCTGTTATTAGGTGGTCCTGATGCTCTAAGCCATTAATGAAGTTGCAACAGTAACCT i dasNov3.JH570378 C 0 I 462 a score=3928293.000000 s hg38.chr5_GL383530v1_alt 33858 275 + 101241 CTGGT-GGCTATGTCAT-A-AT---ATGAGAGGTGAGAATTACTGAGTTACATTGATGAATGAGTTTTAC---TTTTTGCCAGTTCCCTCTTGGCCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---ATTGGCT--------------AAAAGCCAACAAAATTAGAGGAAGAAGGAGAAACAAAAGATTCAGGT-AAAATGAATTA-TTAAGAATG---A---AAAAAATTCTG--ATAGTGTCTCTCT-T-------CCTTTTAGATTATG--ATTCCGTC-AGTGTTTGTACATGCTTG---TAGAGGCC----AGCGGACTAAGGA s panTro5.chr5 20262610 275 + 181907262 CTGGT-GGCTATGTCAT-A-AT---ATGAGAGGTGAGAGTTACCGAGTTACATTGATGAATGAGTTTTAC---TTTTTGCCAGTTCCCTCTTGGCCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---ATTGGCT--------------AAAAGCCAACAAAATTAGAGGAAGAAGGAGAAACAAAAGATTCAGGT-AAAATGAATTA-TTAAGAATG---A---AAAAAATTCTG--ATAGTGTCTCTCT-T-------CCTTTTAGATTATG--ATTCCGTC-AATGTTTGTACATGCTTG---TAGAGGCC----AGCGGACTAAGGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20279902 275 + 183735486 CTGGT-GGCTATGTCAT-A-AT---ATGAGAGGTGAGAGTTACCGAGTTACATTGATGAATGAGTTTTAC---TTTTTGCCAGTTCCCTCTTGGCCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---ATTGGCT--------------AAAAGCCAACAAAATTAGAGGAAGAAGGAGAAACAAAAGATTCAGGT-AAAATGAATTA-TTAAGAATG---A---AAAAAATTCTG--ATAGTGTCTCTCT-T-------CCTTTTAGATTATG--ATTCCGTC-AATGTTTGTACATGCTTG---TAGAGGCC----AGCGGACTAAGGA i panPan2.chr5 C 0 I 24 s gorGor5.CYUI01014999v1 4765750 276 - 13748885 CTGGT-GGCTATGTCAT-A-AT---ATGAGAGGTGAGAGTTACTGAGTTACATTGATGAATGAGTTTTAC---TTTTTGCCAGTTCCCTCTTGGCCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---ATTGGCT--------------AAAAGCCAACAAAATTAGAGGAAGAAGGAGAAACAAAAGATTCAGGTAAAAATGAATTA-TTAAGAATG---A---AAAAAATTCTG--ATAGTGTCTCTCT-T-------CCTTTTAGATTATG--ATTCCGTC-AATGTTTGTACATGCTTG---TAGAGGCC----AGTGGACTAAGGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53802526 275 - 163208435 CTGGT-GGCTGTGTCAT-A-AT---ATGAGAGGTGAGAGTTACTGAGTTAGATTGATGAATGAGTTTTAC---TTTTTGCCAGTTCCCTCTTGGCCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---ATTGGCT--------------AAAAGCCAACAAAATTAGAGGAAGGAGGAGAAACAAAAGATTCAGGT-AAAGTGGATTG-TTAAGAATG---A---AAAAAATTCTG--ATCGTGTCTCTCT-T-------CCTTTTAGATTATG--ATTCTGTC-AATGTTTGTACATGCTTG---TAGAGGCC----AGCGGACTAAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87828895 273 - 180051392 CTGGT-GGCTGTGTCAT-ACAT-------GAGGTGAGAGTTACCGAGTTAGACTGATGAATGAGTTTTAC---TTTTTGCCAGTTCCCTCTTGGCCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---ATTGGCT--------------AAAAGCCAACAAAATTAGAGGAAGAAGGAGAAACAAAAGATTCAGGT-AAAGTGAATTA-TGAAGAATG--AA---AAAAAATTCTG--ATAGCATCTCTCT-T-------GCTTTTAAATTATG--GTTATGTC-AATGTTTGCACATGCTTG---TAGAGGCC----AGCGGACTAAGGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87933309 275 - 181584905 CTGGT-GGCTGTGTCAT-ACAT-------GAGGTGAGAGTTACCGAGTTAGACTGATGACTGAGTTTTAC---TTTTTGCCAGTTCCCTCTTGGCCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---ATTGGCT--------------AAAAGCCAACAAAATTAGAGGAAGAAGGAGAAACAAAAGATTCAGGT-AAAGTGAATTA-TGAAGAATGAAAA---AAAAAATTCTG--ATAGCATCTCTCT-T-------GCTTTTAAATTATG--GTTATGTC-AATGTTTGCACATGCTTG---TAGAGGCC----AGCGGACTAAGGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1156218 275 - 8785636 CTGGT-GGCTGTGTCAT-ACAT-------GAGGTGAGAGTTACCGAGTTAGACTGATGAATGAGTTTTAC---CTTTTGCCAGTTCCCTCTTGGCCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---ATTGGCT--------------AAAAGCCAACAAAATTAGAGGAAGAAGGAGAAACAAAAGATTCAGGT-AAAGTGAATTA-TGAAGAATGAAAA---AAAAAATTCTG--ATAGCATCTCTCT-T-------GCTTTTAAATTATG--GTTATGTC-AATGTTTGCACATGCTTG---TAGAGGCC----AGCGGACTAAGGG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1624463 273 + 27333823 CTGGT-GGCTGTGTCAT-ACAT-------GAGGTGAGAGTTACCGAGTTAGACTGATGAATGAGTTTTAC---TTTTTGCCAGTTCCCTCTTGGCCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---ATTGGCT--------------AAAAGCCAACAAAATTAGA-GAAGAAGGAGAAACAAAAGATTCAGGT-AAAGTGAGTGA-TGAAGAATG-AAA---AAAAAATTCTG--ATGGCATCTCTCT-T-------GCTTTTAAATTATG--GTTATGTC-AATGTTTGCACATGCTTG---TAGAGGCC----AGTGGACTAAGGG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1894552 275 - 91010382 CTGGT-GGCTGTGTCAT-ACAT-------GAGGTGAGAGTTACTGAGTTAGCCTGATGAATGAGTTTTAC---TTTTTGCCAGTTCCCTCTTGGCCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---ATTGGCT--------------AAAAGCCAACAAAATTAGAGGAAAAAGGAGAAACAAAAGATTCAGGT-AAAGTGAATTA-TGAAGAATGAAAA---AAAAAATTCTG--ATAGCATCTCTCT-T-------GCTTTTAAATTATG--GTTATGTC-AATGTTTGCACATGCTTG---TAGAGGCC----AGCGGACTAAGGG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2005586 274 + 5179401 CTGGT-GGCTGTGTCAT-ACAT-------GAGGTGAGAGTTACCGAGTTAGACTGATGAATGAGTTTTAC---TTTTTGCCAGTTCCCTCTTGGCCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---ATTGGCT--------------AAAAGCCAACAAAATTAGAGGAAGACGGAGAAACAAAAGATTCAGGT-AAAGTGAATTA-TGAAGAATG-AAA---AAAAAATTCTG--ATAGCATCTCTCT-T-------GCTTTTAAATTATG--GTTATGTC-AATGTTTGCACATGCTTG---TAGAGGCC----AGTGGACTAAGGG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7711329 281 - 21726897 CTGGT-GGCTGTGTCAT-ACATAATATGAGAGATGAGAGTTACGGAGTTAGACTGATGAATGAGTTTTAC---TTTTTGCCAGTTCCCTCTTGGCCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---ATTGGCT--------------AAAAGCCAACAAAATTAGAGGAAGAAGGAGAAACAAAAGATGCAGGT-AAAGTGAATTA-TTAAGAATG-AAA---AAAAAATTCTG--ATAGCATCTCTCT-T-------GCTTTTAAATTATG--GGTATGTC-AATGTTTGCACTTGCTTT---TAGAGGCC----AGCGGACTAAGGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112532517 276 + 204313951 CTGGT-GGCTGTGTCAT-A-AT---ATGAGAGGTGAGAGTGATCGAGTTAGATAGGTGAATGAGTTTTAC---TTTTTGCCTGTTCCCTCTTGACCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---ATTGGCT--------------AGAAGCCAACAAAATTAGAGGAAGAAAGAGAAACAAAAGATTCACGT-AAAATGAATTA-TTAAGAATC---A---AAAATATTCTG-CCTAGTGTCTCCCT-T-------CCTTTTAAATTCTG--GTTCTGTC-AGTGTTTGTATCTGCTTG---TAGAGGCC----AGTGGACTAAGGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44977896 276 + 71252344 CTGGT-GGCTGTGTCAT-A-AT---ATGAGAGGTGAGAGTGATCAAGTTAGACTGATGAATGAGTTTTAC---TTTTTGCCTGTTCCCCCTTGACCTTAGCA-----------------------------TCCAAGTCTTAATTATTGTGA---ATTGGCT--------------AGAAGCCAACAAAATTAGAGGAAGAAAGAGAAACAAAAGATTCAGGT-AACGTGAATTA-TTAAGAATG---A---AAACAATTCTG-CCTAGTGTCTCTCT-T-------CCTTTTAAATTCTG--GTTCTGTC-AGTGGTTGTACCTGCTTG---GAGAGGCC----AGTGGACTAAGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 341890 276 - 1393929 CTGGT-GGCTGTGTCAT-A-AT---ATGAGAGGTGAGAGTGATCGAGTTAGACTGATGAATGAGTTTTAC---TTTTTGCCTGTTTCTTCTTGACCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---ATTGGCT--------------AGAAGCCAACAAAATTAGAAGAAGAAAGAGAAACAAAAGATTCAGGT-AAAGTGAATTA-TTAAGAATG---A---AAAAAATTTTG-CCTAGTGTCTCTCT-T-------CCTTTTAAATTCTG--GTTCTGTC-AGTGTTTGTACCTGCTTG---TAGAGGCC----AGTGGACTAAGGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1419126 276 - 15889662 CTGGT-GGCTGTGTCAT-A-AT---ATGAGAGGTGAGAGTGATCGAGTTAGATTGATGAATGAATTTTAC---TTTTTGCCTGTTCCCTCTTGACCTCAACA-----------------------------TCAAAGTATTAATTATTGTGA---ATTGGCT--------------AGAAGCCAACAAAATTAGAGGAAGAAAGAGAAACAAAAGATTCAGGT-AAAGTGAATTA-TTAAGAATG---A---AAAAAATTCTG-CCTAGTGTCTCTCT-T-------CCTTTTAAATTCTG--GTTCTGTG-AGTGTTTGTACGTGCTTG---TAGAAGCC----AGTGGACTAAGGA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84829887 280 + 108143057 CTGGT-TGTTGTGTCAT-G-AT---ACAAGA-GTGAGAGTAATTGAATTAGATTGATGAATGAGTTTTAC-TTTTTTTTCCAGTTCCCTCTTGGCCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---AGTGGCC--------------AAAAGTCAATAAAATTAGAGGAGGAAGCAGAAACAAAAGAATCAAGT-AAAGTGAATTA-TTAAGGATA---AT--AAGAAATTCAC-CCTAGTGTCTCTCT-T-------CCTTTCAAATTTTGTAGTTCTATT-AATGCTTGCACATGCTTT---TAGAGGCC----TGGAGACTAAGGA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 600228 282 - 10520994 CTGGT-TGTTGTGTCATGG-AT---GTGAGAGGTGAGAGTAATTGAATTAGATTGATGAATGAGTTTTAC--TTTTTTTCCAGTTCCCTCTTGGCCTCAACA-----------------------------TCAAAGTCTTAATTATTGTGA---AGTGGCC--------------AAAAGCCAATAAAATTAGAGGAAGAAGCAGAAATAAAAGAATCAGGT-AAAGTGAATTA-TTAAGGATA---AT-AAAGAAATTCAC-CCCAGTGTCTTTCT-T-------CCTTTTAAATTGTGTAGTTCCATT-AATGTTTGTACATGCTTT---TAGAGGCC----TGGAGACTAAGGA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1300580 284 - 29863360 AGGCT-GGTCCCCTTGA-G-AT---AAGAGAGGTGAGCATAATTGAATTAGATTGATGAATGAGTTTTAC--TTTTTTTCCAGTTCCCTCTTGGCCTTAAGA-----------------------------TCAAAGTCTTAATTATTGTCA---AGTGGCC--------------AAATGCCAATAACATTAGAGGAAGAAGGGGCAATAAAAGAATCAGGT-GAAGTGAATTATTTAGGGAAA---AT--AAAAAATTCAC-TGTAGCATCTC-CT-T-------CCTTTCATGTTGTGAGGTTCAATT-AATGTCTGTGCATGCTTC---TAGCCTCCTGGATGGAGACTAAGGA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76457468 316 + 120421639 CTGAA-GGCTGTGAGAG-G-GC---AC--ATGGTAGAGGTGGTTTCATGTCCTTGATAAATGAGTTTCAT---CTTTT---TGTTTCCTCTGTGCCTCAAGACTTCCTCTGACTTCTGGCTTTTAGCCATTTCACAGTAATTAATACTGTAATATATTGGCTTTCTTCCATTTCTCAATGGTTAA-AACACTAGAAGGAGAAGG------AAAAGAATCAGAT-AAAATGAATTA-TCAAGGATG---ATTTAAAAAGTTA----CTAGCATGCCTCT-TAAAAAAACATGTGAAATTATG--TTTTTTTTAAATGTCTGTGCATGTGTC---CAGAGACC----TGCAGACTAAG-- i mm10.chr13 C 0 C 0 s canFam3.chr3 14316650 279 + 91889043 CTGGTAGGTTGTGTAAT-G-AC---ATGAGAGGTAGGAGTGATTATATTAAATTGATGAATGAGTTTTACTTTTTTTTTCCAGTCCCCCTTTGG---GGAAA-----------------------------TCCAAGTTTTAATTATTGTGA---AGTGGCA--------------AAAAGCCAATAATATTAGAGGAAGAGGGAGAAACAAAAGAATCAGGT-AAAATTAATTA-TTAAGGATG---AT--AAATAGTTTCATCATATTGTCTCTCT-T-------CCTTTTAAATTATG--ACATCTTC-AGTGTTCAGACGTGCTTC---GAGAGGCC----TGCAGACCAAGGA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1235378 275 - 11655695 ctgGT-GGTT-TGTAAT-G-AT---GTGAGGGAAGAGAGTGATCAGATTAAATTGATAGAAGAGTT---C---TTTTGG--AGTTCCTTCTTGGCCCCAATA-----------------------------CTGAAGTCTTAATTATTGTGA---AGTGGCT--------------AAAATCTAATGAAGTTAGAGGAAGAAAGGAAAACAGGAGAATCAGGT-AAAATGAATGA-TTAAGAATG---AT--AAAACATTCAC-CGTAGTATTTCTCTCT-------TCTTTTAAAATATG--ATTCCATC-AGTCTTTCTACACACTTATTCTAGAAGCC----TGTAGACCAAGAG i dasNov3.JH570378 I 462 C 0 a score=884451.000000 s hg38.chr5_GL383530v1_alt 34133 99 + 101241 ATTCTTTG-T---A-----AAAAAAAAAAAAAGGA----AGAAGAAAATGAGGATCCAGGTTGATGACTTAATGTACAGATTTTATTTTGTTATTTTAT---------TTTTAA------A---TATTGT s panTro5.chr5 20262885 97 + 181907262 ATTCTTTG-T---A-----AAAAAAAAAAA--GGA----AGAAGAAAATGAGGATCCAAGTTGATGACTTAATGTACAGATTTTATTTTGTTATTTTAT---------TTTTAA------A---TATTGT i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4766026 100 - 13748885 ATTCTTTGTT---A-----AAAAAAAAAAAAAGGA----AGAAGAAAATGAGGATCCAGGTTGATGACTTAATGTACAGATTTTATTTTGTTATTTTAT---------TTTTAA------A---TATTGT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53802801 96 - 163208435 ATTCTTTG-T---A-----AAAAAAAAAAAAAG-------GAAGAAAATGAGGATCCAGGTTGATGACTTAATATACAGATTTTATTTTGTTATTTTAT---------TTTTAA------A---TATTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87829168 103 - 180051392 ATTCCTTG-T---T-----aaaaaaaaaaaaaaaaaaaaggaagaaaaTGAGGATCCTTGTTGATGACTTAATAGACAGATTTTATTTTATTATTTTAT---------TTTTAA------A---TATTGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87933584 103 - 181584905 ATTCTTTG-T---T-----aaaaaaaaaaaaaaaaaaaaggaagaaaaTGAGGATCCTGGTTGATGACTTAATAGACAGATTTTATTTTATTATTTTAT---------TTTTAA------A---TATTGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1156493 108 - 8785636 ATTCTTTG-T---TaaaaaaaaaaaaaaaaaaaaaaaaaGGAAGAAAATGAGGATCCTGGTTGATGACTTAATAGACAGATTTTATTTTATTATTTTAT---------TTTTAA------A---TATTGT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1624736 89 + 27333823 ATTCTTTG-T---a-----aaaaaaaaaaaaa---------aagaaaaTGAGGATCCTGGTTGATGACTTAATGTACAG-----ATTTTATTATTTTAT---------TTTTAA------A---TATTGT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1894827 101 - 91010382 ATTCTTTG-T---G-----TAAAAAAAAAAAAAAA--CCCGAAGAAAATGAGGATCCTGGTTGATGACTTAATGTACAGATTTTATTTTATTATTTTAT---------TTTTAA------A---TATTGT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2005860 100 + 5179401 ATTCTTTG-T---T-----TAAAAAAAAAAAAAAA---TGGAAGAAAATGAGGATCCTGGTTGATGACTTAATGTACAGATTTTATTTTGTTATTTTAT---------TTTTAA------A---TATTGT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7711610 93 - 21726897 ATTCTTTG-T---T-----AAAAAAAAATAT----------AAGAAAATGAGGATCCTAGTTGAGGACTTAATGTACAGATTTTATTTTATTATTTTAT---------TTTTAA------A---TATTGT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112532793 93 + 204313951 ATTCTTTG-T-------------GAAAAAAAAAAT----GGAAGAAAATGAGAA-CCATGTTGATGACTTTACATATAGattttattttattattttat---------ttttaa------a---tattGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44978172 102 + 71252344 ATTCTTTG-TTaaa-----aaaaaaaaaaaaaaaa----ggaagaaaaTGAGAATCCTTGTTGATGACTTCatatatagattttattttattatgttat---------ttttaa------a---tattGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 342166 95 - 1393929 ATTCTTTG-T------------GGAAAAAAAAAAT----GGAAGAAAATGAGAATCCATTTTGATGACTTCATGTATAGATTTTATTTTATTATTTTAT---------TTTTAA------A---TATTGT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1419402 99 - 15889662 ATTCTTTG-T---G-----AAAAAAAAAAAAAAAT----GGAAGAAAATGAGAATCCATGTTGATGACTTCATATATAGATTTTATTTTATTATTTTAT---------TTTTAA------A---TATTGT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84830167 90 + 108143057 ATCCTTTG-T---A-----AAAG----------------TGGGAAAAAGGGGAATCCATTTTGATTACTGTATGTGTAGATTTTAGTTTATTATTTTAT---------GTTTAA------ATAGTATTAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 600510 90 - 10520994 ATCCTTTG-C---A-----AAAA----------------TGGGGAAAAGGAGAATCCATTTTGATTACTGAATGTGTACattttattttattattttat---------gtttaA------ATAGTATTGT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1300864 87 - 29863360 GTCCTTTG-----A-----AGAA----------------TGGGGAAAAGGAGA--CTATTTTGGTTACTAAATGTGTCGattttattttatctttttat---------ttttat------ataGTATTGT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76457784 65 + 120421639 ----------------------------------------CAAGGAAAAGTGGATCCATCTTCATTACTGATTTTGAACATTTTACAT-------TTCT---------TTTTAA------A---TAGTGT i mm10.chr13 C 0 I 2688 s canFam3.chr3 14316929 70 + 91889043 ATTCTTTG-T---G------------------------------AAAATGAGAATCCAGTTGCATTACTGAATATGTGTATTTTATT--------TTAT---------TTGAAA------G---TAGTGT i canFam3.chr3 C 0 I 3 s dasNov3.JH570378 1235653 102 - 11655695 ATTCTTTG-T---A-----ACAA----------------TGGGGGAAATGAGAATCCATTTTGATTACTGAACATGTAGATTTTACTTTATTATTTTATTCTGTTCTATTTTAGTGAGTCA---TGTTGT i dasNov3.JH570378 C 0 C 0 e panPan2.chr5 20280177 24 + 183735486 I a score=2824095.000000 s hg38.chr5_GL383530v1_alt 34232 219 + 101241 ACTATGAAAATCAAGTTGTGCTTGGTTAAACACACACAAA-A-AAA-TCTCTCATGTACTTAATCAGTATTTTTAGTAACTCTTCAATGACATAGGC----TATTAGCAGCCGCTTAAGGAACCT--CAGCTCTAATTTAGCCC-TTATTTT----AATCTTGAGTTCTGAAAGTCAGAAATTAAATGTCATCTATTAGCAACTAATACT--ACCTTTGCAAGTTAGTTCAAGAA s panTro5.chr5 20262982 219 + 181907262 ACTATGAAAATCAAGTTGTGCTTGGTTAAACACACACAAA-A-AAA-TCTCTCATGTACTTAATCAGTATTTTTAGTAACTCTTCAATGACATAGGC----TATTAGCAGCCGCTTAAGGAACCT--CAGCTCTATTTTAGCCC-TTATTTT----AATCTTGAGTTCTGAAAGTCAGAAATTAAATGTCATCTATTAGCAACTAATACT--ACCTTTGCAAGTTAGTTCAAGAA i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4766126 219 - 13748885 ACTATGAAAATCAAGTTGTGCTTGGTTAAACACACACAAA-A-AAA-TCTCTCATGTACTTAATCAGTATTTTTAGTAACTCTTCAATGACATAGGC----TATTAGCAGCTGCTTAAGGAACCT--CAGCTCTATTTTAGCCC-TTATTTT----AATCTTGAGTTCTGAAAGTCAGAAATTAAATGTCATCTATTAGCAACTAATACT--ACCTTTGCAAGTTAGTTCAAGAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53802897 219 - 163208435 ACTATGAAAATCAAGTTGTGCTTGGTTAAACACACACAAA-A-AAA-TCTCTTATGTACTTAATCAGTATTTTTAGTAACTCTTCAATGACATAGGC----TATTAGCAGCCGCTTAAGGAACCT--CAGCTCTATTTTAGCCC-TTTTTTT----AATCTTGAGCTCTGAAAGTCAGAAATTAAATGTCATCTATTAGCAACTAATACT--ACCTTTGCAAGTTAGTTCAAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87829271 219 - 180051392 ACTATGAAAATCAAGTTGTGCTTGGTTAAACACACACAAA-A-AAAACCTCTTGTGTACTTAATCAGTATTTTTAGTAACTCTTCAGTGACATAGGT----TATTAGCAGCTGCTTAAGGAACCT--CAGCTCTATTTTAGCCC-TTTTTTT-----ATCTTGAGTTCTGAAAGTCAGAAATTAAATGTCATCTATTAGCAACTAATACT--ACCTTTGCAAGTTAGTTCAAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87933687 219 - 181584905 ACTATGAAAATCAAGTTGTGCTTGGTTAAACACACACAAA-A-AAAGCCTCTTGTGTACTTAATCAGTATTTTTAGTAACTCTTCAGTGACATAGGT----TATTAGCAGCTGCTTAAGGAACCT--CAGCTCTATTTTAGCCC-TTTTTTT-----ATCTTGAGTTCTGAAAGTCAGAAATTAAATGTCATCTATTAGCAACTAATACT--ACCTTTGCAAGTTAGTTCAAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1156601 218 - 8785636 ACTATGAAAATCAAGTTGTGCTTGGTTAAACACACACAAA-A-AAA-CCTCTTGTGTACTTAATCAGTATTTTTAGTAACTCTTCAGTGACATAGGT----TATTAGCAGCTGCTTAAGGAACCT--CAGCTCTATTTTAGCCC-TTTTTTT-----ATCTTGAGTTCTGAAAGTCAGAAATTAAATGTCATCTATTAGCAACTAATACT--ACCTTTGCAAGTTAGTTCAAGAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1624825 218 + 27333823 ACTATGAAAATCAAGTTGTGCTTGGTTAAACACACACAAA-A-AAA-CCTCCTGTGTACTTAATCAGTATTTTTAGTAACTCTTCAGTGACATAGGT----TATTAGCAGCTGCTTAAGGAACCT--CAGATCTATTTTAGCCC-TTTTTTT-----ATCTTGAGTTCTGAAAGTCAGAAATTAAATGTTATCTATTAGCAACTAATACT--ACCTTTGCAAGTTAGTTCAAGAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1894928 218 - 91010382 ACTATGAAAATCAAGTTGTGCTTGGTTAAACACACACAAA-A-AAA-CCTCTTGTGTACTTAATCAGTATTTTTAGTAACTCTTCAGTGACATAGGT----TATTAGCAGCTGCTTAAGGAACCT--CAGCTCTATTTTAGCCC-TTTTTTT-----ATCTTGAGTTCTGAAAGTCAGAAATTAAATGTTATCTATTAGCAACTAATACT--ACCTTTGCAAGTTAGTTCAAGAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2005960 218 + 5179401 ACTATGAAAATCAAGTTGTGCTTGGTTAAACACACACAAA-A-AAA-CCTCTTGTGTACTTAATCAGTATTTTTAGTAACTCTTCAGTGACATAGGT----TATTAGCAGCTGCTTAAGGAACCT--CAGCTCTATTTTAGCCC-TTTTTTT-----ATCTTGAGTTCTGAAAGTCAGAAATTAAATGTTATCTATTAGCAACTAATACT--ACCTTTGCAAGTTAGTTCAAGAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7711703 218 - 21726897 ACTATGAAAATCAAGTTGTGCTTGGTTAAACACACACAAA-A-AAA-CCTCTTGTGTACTTAATCAGTATTTTTAGTAACTCTTCAGTGACATAGGT----TATTAGCAGCCACTTAAGGAACCT--CAGCTCTATTTTAGCCC-TTTTTTT-----ATCTTGAGTTCTGAAAGTCAGAAATTAAATGTCATCTATTAGCAACTAATACT--ACCTTTGCAAGTTAGTTCAAGAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112532886 221 + 204313951 CCTGTGAAAATCAAGTTTTGTTTGGTTGAGCACACAAAAA-T-TAA-TCTCTTATGTAGTTAATCAGTATTTTTAGTAACTATTCAATGACATAGGT----TATTAGCAGCCACTTAAGGAACCTCACAGCTCTTTTTTAGCCCTTTTTTTT-----ATCTTGAGTTCTGAAAGTCAGAAATTCGATGTCATCTATTAGCAACTAATACT--ACCTCTACAAGTTAGTTCAAGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44978274 218 + 71252344 CCTGTGACAATCAAGTTGTGTTTGGTTGAGCACACAAAAA-T-TAA-CCTATTATGTAGTTAATCAGTATTTTTAGTAACTATTCAGTGACATAGGT----TATTAGCAGCCACTTAAGGAACCT--CAGCTCTGTTTTAGCCC-TTTTTTT-----ATTTTGAGTTCTGAAAGTCAGAAATTAAATGTCATCTATTAGCAACTAATACT--ACCTTTACAAGTTAGTTCAAGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 342261 218 - 1393929 CCTGTGACAATCAAGTTGTGTTTGGTTGAGCATACAAAAA-T-TAA-TCTCTTATGTAGTTAATCAGTATTTTTAGTAACTATTCAGTGACATAGGT----TATTAACAGCCACTTAAGGAACCT--CAGCTCTGTTTTAGCCC-TTTTTTT-----ATCTTGAGTTCTGAAAGTCAGAAATTAAATGTCATCTATTAGCAACTAATACT--ACCTTTACAAGTTAGTTCAAGAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1419501 218 - 15889662 CCTGTGACAATCAAGTAGTGTTTGGTTGAGCACACAAAAA-T-TCA-TCTCTTAAGTAGTTAATCAGTATTTTTAGTAACTATTCAATGACATAGGT----TATTAGCAGCCACTTAAGGAACCT--CAGCTCTGTTTTGGCCC-TTTTTTT-----ATCTTGAGTTCTGAAAGTCAGAAATTAAGTGTCATCTATTAGCAACTAATACT--ACCTTTATAAGTTAATTCAAGAA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84830257 220 + 108143057 ACCAAAGCAATCAGGTTGTGCTTGGTTAAACACAGAAAAAGA-AAA-CCTCTTATG----TAGTTAGTATTTTTACTAACTATTCAATCACATAGGT----CATTAGCTGTTGTTCAAGGAACCT--CAGCTCTGTTTTAGTCC-TTTTTTTAATTAACCCCTGGTTTTGAAAGTTGGAAGTTAAATGTCATTTGTTAGCAGCTCATACT--ACCTTTGCAAGTTAGTTCAAGAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 600600 217 - 10520994 ACCATGGTAATCAGGTTGTGCTTAGTTAAACACAGAAAA--A-AAA-CCTCTTATG----TAATTAGTATTTTTACTAATTATTCAATGACATAGGT----CATTAGCAGTTGCTTAAGAAACCT--TAGCTCTGTCTTAGTCC-TTTTTTT-ATTAATCCCTGTTTTTGAAAATTGGAAGTTAAATATCATTTGTTAGCAGCTCATACT--GCCTTTGCAAGTTAGTTCAAGAA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1300951 217 - 29863360 ACCACAGCAATCAAGTTGTTCTTGGTTAAACACAGAGAA--A-ATA-TCTCTTCTGTATTTAATCAATATCTTCACTAACTCCTCAGGGACATGGGC----CATTGGCAGTTGCTTGAGGA-------AGTCCATTCTTGGTCC-TTTTTT--ATTAATCACGAGTTTTGAAAGTCAGAAGTGCAATGTCATCTATTAGCAACTCACACTACACCTTTGCAAGTTAGCTGGAGAA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14317002 208 + 91889043 ATTGTGGCAGT---ATTGTGCTTAG-------CACAGAAA-G-CTG-TCTCTTCTGTAGCTCCTCAGTACTTCTACTGACTACCCAGTGGCGTAGGC----CATTAGCAGGTGTATAAGGAACCT--CAGTTCTGGGTTATCCC-TTTTTTT-----ATCCTGAGATTTGAATGTCAGAAATGAAATGTCATCTGTTAGCAACTCGTACC--ACCTCTGCAAGTTAGTTCAGGAA i canFam3.chr3 I 3 C 0 s dasNov3.JH570378 1235755 225 - 11655695 ACTGCAACAATCAGGTTGTTCTTGGTAAAACACAGAAAAA-ATTCA-TCTTTTCTATAGCTAATCAGCATTTTTACTGACTCTCCAAAGTAGCGGTCATTGCATTGACAGATGCATGAGGAACCA--CAGCTCCATGTTAGGTT-TTTTTGT---TAATCCTTAGTTTTGAATGTCAGAAATTAAATGTCATCTGTTAGTAACTCATAAT--ACTTTTGCAACTTAATTTAAAAA i dasNov3.JH570378 C 0 I 614 e mm10.chr13 76457849 2688 + 120421639 I e panPan2.chr5 20280177 24 + 183735486 I a score=169028.000000 s hg38.chr5_GL383530v1_alt 34451 12 + 101241 CTTTGGGCTCCT s panTro5.chr5 20263201 12 + 181907262 CTTTGGGCTCCT i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4766345 12 - 13748885 CTTTGGGCTCCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53803116 12 - 163208435 CTTTGGGCTCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87829490 12 - 180051392 CTTTGGGCTCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87933906 12 - 181584905 CTTTGGGCTCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1156819 12 - 8785636 CTTTGGGCTCCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1625043 12 + 27333823 CTTTGCGCTCCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1895146 12 - 91010382 CTTTGGGCTCCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2006178 12 + 5179401 CTTTGGGCTCCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7711921 12 - 21726897 CTTTGGGCTCCT i colAng1.NW_012115488v1 C 0 I 313 s calJac3.chr2 112533107 12 + 204313951 CTTTGAGCTCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44978492 12 + 71252344 CTTTGAGCTCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 342479 12 - 1393929 CTTTGAGCTCCT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1419719 12 - 15889662 TTTTGAGCTTCT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84830477 12 + 108143057 CTTTGGGCTCCT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 600817 12 - 10520994 CTTTGGGCTCCT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1301168 12 - 29863360 CTTTGGCTTTCA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14317210 12 + 91889043 CTTTGGGCTCCT i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 1235980 614 - 11655695 I e mm10.chr13 76457849 2688 + 120421639 I e panPan2.chr5 20280177 24 + 183735486 I a score=1931437.000000 s hg38.chr5_GL383530v1_alt 34463 157 + 101241 AATTTACATATTGCAAGCTGTTGCTGAA-TTTAGTGTGAGAGCTACCATTTGCCTGTAACAGAATTAAAATTATGATCATCCAAAAGAATTTGTAGGACCTAACAGAACTTCTCATTGA-TTTTTGGCTTTTAAATTTATCATTTCTCTTTCTTCTTA---C s panTro5.chr5 20263213 157 + 181907262 AATTTACATATTGCAAGCTGTTGCTGAA-TTTAGTGTGAGAGCTATCATTTGCCTATAACAGAATTAAAATTATGATCATCCAAAAGAATTTGTAGGACCTAACAGAACTTCTCATTGA-TTTTTGGCTTCTAAATTTATCATTTCTCTTTCTTCTTA---C i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4766357 158 - 13748885 AATTTACATATTGCAAGCTGTTGCTGAATTTTAGTGTGAGAGCTATCATTTGCCTATAACAGAATTAAAATTATGGTCATCCAAAAGAATTTGTAGGACCTAACAGAACTTCTCATTGA-TTTTTGGCTTCTAAATTTATCGTTTCTCTTTCTTCTTA---C i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53803128 155 - 163208435 AATTTATATATTGCAAGCTGTTGCTGAA-TTTAATGTGAGATCTATCATTTGCCTATAAC--AATTAAAATTATGATCATCCAAAAGAGTTTGTAGGACCTAACAGAACTTCTCATTGA-TTTTTGGCTTCTAAATTTATTATTTCTCTTTCTTCTTA---C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87829502 159 - 180051392 AATTTGTATATTGCAAGCTGTTGCTAAA-TTTAGTGTGAGATGTATTGTTTGCATATAACAGAATTAAACTTATGATCATCCAAAAGAATTTGTAGGACCTAACAGAACTTCTCATTGA-TTTTGGGTTTCTAAATTTATCATTTCTCTTA-TTCTTACACC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87933918 159 - 181584905 AATTTGTATATTGCAAGCTGTTGCTAAA-TTTAGTGTGAGATGTATTGTTTGCATATAACAGAATTAAACTTATGATCATCCAAAAGAATTTGTAGGACCTAACAGAACTTCTCATTGA-TTTTGGGTTTCTAAATTTATCATTTCTCTTA-TTCTTACACC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1156831 159 - 8785636 AATTTGTATATTGCAAGCTGTTGCTAAA-TTTAGTGTGAGATGTATTGTTTGCATATAACAGAATTAAACTTATGATCATCCAAAAGAATTTGTAGGACCTAACAGAACTTCTCATTGA-TTTTGGGTTTCTAAATTTATCATTTCTCTTA-TTCTTACACC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1625055 160 + 27333823 AATTTGTATATTGCAAGCTGTTGCTAAA-TTTAGTGTGAGATGTATCGTTTGCCTATAACAGAATTAAACTTATGATCATCCAAAAGAATTTGTAGGACCTAACAGAACTTCTCATTGA-TTTTGGGTTTCTAAATTTATCATTTCTCTTACTTCGTACACC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1895158 146 - 91010382 AATTTGTATATTGCAAGCTGTTGCTAAA-TTTAGTGTGAGAGGTATCATTTGCCTATAACAGAATTAAACTTATGATCATCCAAAAGAATTTGTAGGACCTAACAGAACTTCTCATTGA-TTTTGGGTTTCTAAATTTATCA--------------TACACC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2006190 160 + 5179401 AATTTGTATATTGCAAGCTGTTGCTAAA-TTTAGCGTGAGATGTATCGTTTGCCTATAACAGAATTAAACTTATGATCATCCAAAAGAATTTGTAGGACCTAACAGAACTTCTCATTGA-TTTTGGGTTTCTAAATTTATCATTTCTCTTACTTCTTACACC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7712246 160 - 21726897 AATTTGTATATTGCAAGCTGTTGCTAAA-TTTAGTGTGAGATGTATCATTTGCCTATAACAGAATTAAAATTATGATCATCCAAAAGAATTTGTAGGACCTAACAGAACTTCTCATTGA-TTTTGGGTTTCTAAATTTATCATTTCTCTTACTTCTTACACC i colAng1.NW_012115488v1 I 313 C 0 s calJac3.chr2 112533119 156 + 204313951 AATTTAGATAATGCAAGCTGTTGCTGAA-TTTAGTGTGAAATCTATCATTTGCTTATAATGGAATTAAAATTATGACCATCCAAAAGAATTTGTAGGACTTCACAGAATTTCTCATTGA-TTTT-GGCTTCTAAATTTATCATTTCTCTTACTTCTTAC--- i calJac3.chr2 C 0 I 3 s saiBol1.JH378106 44978504 156 + 71252344 AATTTAGATAATGCAAGCTGTTGCTGAA-TTTAGTGTGAGATCTATCATTTGCTTATAATGGAATTAAAATTATGATCATCCAAAAGAATTTGTAGGACTTCATGGAATTTCTCGCTGA-TTTT-GGCTTCTAAATTTATCATTTCTCTTACTTCTTAC--- i saiBol1.JH378106 C 0 I 273 s cebCap1.NW_016107830v1 342491 156 - 1393929 AATTTAGATAATGTAAGCTGTTGCTGAA-TTTAGTGTGAGATTTATCATTTGCTTATAATGGAATTAAAATTATGATCATCCAAAAGAATTTGTAGAACTTCACGGAATTTCTCGCTGA-TTTT-GGCTTCTAAATTTATCATTTCTCTTACTTCTTAC--- i cebCap1.NW_016107830v1 C 0 I 3 s aotNan1.NW_018506370v1 1419731 156 - 15889662 AATTTAGGTAATGCAAGCTGTTGCTGAA-TTTAGTGTGAGATCTATCATTTGCTTATAATGGAATTAAAATTATGATCATCCAAAAGAATTTGTAGGACTTCACGGAATTTCTCGCTGA-TTTT-GGCTTCTAAATTTATCATTTCTCTTACTTCTTAC--- i aotNan1.NW_018506370v1 C 0 I 3 s micMur3.chr12 84830489 161 + 108143057 AATTTAGATAATGCAGGCTGTTGCTGAA-TTTAGTATGAGTTCTTTCAGTTGCTTATTATGGAATTAAAATTATGATCATCCAAAAGAATTTGTAGGGCTTAACACGATCTCTAGCTGATTTTTTGACTTCTAAATTTATCATTTCTCTTACTTCTTAGATC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 600829 160 - 10520994 AATTTAGATAATGCAGGCTGTTGCTGAA-TTTAGTGTGAGTTCTATCAGTTGCTTATTATGGAATTAGAATTATGATCATCCAAAAGAATTTGTAGGGCTTAACAGGATCTCTAGTTGA-TTTTTGACTTCTAAatttatcatttctcttaattcttagatc i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1301180 159 - 29863360 AATGTGGAGAATGCAGGCTGTTGCTGGA-TTTAGTGTGAGAGCTCTCAGTTGCTTATTACGGAGTTAGAATTATGATCCTCCAAAAGAGTTTGTAGGGCTTAACAGGATTTCTACCTGA-TTTTTGAC-TCTAAGTTTATCATTTCTCATATTCCTTAGACC i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14317222 155 + 91889043 GATTTAGATGATGCAGGCTGTTGCTGAA-TTGAGCTTGAGATCTATCAGGTACTTATTATGGAATTAAAGTTAGGATCATCCAAAACAGTGTATGGTGTTTAACAAAA-TTCTGGCTGA-TATTTGACTTTGAAATTTATATTTTCTCTTGTTTCTTA---- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1236594 156 - 11655695 AGTGTAGATCCTGTATGTTCCTGCTGAC-TTTAGTCTGAGAGCTAAAGGTTGCTTATTATGGAATTAAAATTATAATCATCCTAAAGATTTTGTGATGTTTATCAGGATTTCTCACTGA-TGTTTGGCTTCTACATTTATGTATTGCCTCACTTCCTA---- i dasNov3.JH570378 I 614 C 0 e mm10.chr13 76457849 2688 + 120421639 I e panPan2.chr5 20280177 24 + 183735486 I a score=373947.000000 s hg38.chr5_GL383530v1_alt 34620 32 + 101241 CATGAATTCATTACCTTAGTAGCTTAGTATTT s panTro5.chr5 20263370 32 + 181907262 CATGAATTCATTACCTTAGTAGCTTAGTATTT i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4766515 32 - 13748885 CATGAATTCATTACCTTAGTAGCTTAGTATTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53803283 32 - 163208435 CATGAATTCATTACCTTAGTAGCTTAGTATTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87829661 32 - 180051392 TATGAATTCATTACCCTAGTAGCTTAGTATTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87934077 32 - 181584905 TATGAATTCATTACCCTAGTAGCTTAGTATTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1156990 32 - 8785636 TATGAATTCATTACCCTAGTAGCTTAGTATTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1625215 32 + 27333823 TACGAATTCATTACCCTAGTAGCTTAGTATTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1895304 32 - 91010382 TATGAATTCATTACCCTAGTAGCTTAGTATTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2006350 32 + 5179401 TACGAATTCATTACCCTAGTAGCTTAGTATTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7712406 32 - 21726897 TAAGAATTCATTACCCTAGTAGCTTAGTATTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112533278 32 + 204313951 CATAAAGTCATTACGCTAGTGGCTTAGTATTT i calJac3.chr2 I 3 C 0 s saiBol1.JH378106 44978933 32 + 71252344 CATAAATTCATTACTGTAGTGGCTTAGTATTT i saiBol1.JH378106 I 273 C 0 s cebCap1.NW_016107830v1 342650 32 - 1393929 CATAAATTCATTATTGTAGTGGCTTAGTATTT i cebCap1.NW_016107830v1 I 3 C 0 s aotNan1.NW_018506370v1 1419890 32 - 15889662 CATAAATTCATTACTGTAGTGGCTTAGTATTT i aotNan1.NW_018506370v1 I 3 C 0 s micMur3.chr12 84830650 32 + 108143057 TATTAATTCATTAGCTTAGTACCTTAGTATTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 600989 32 - 10520994 cattaattcattaaCTTAGTACCTTAGTATTT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1301339 27 - 29863360 CATTAATTCA-----TTAGTACCTTAGTATTt i otoGar3.GL873536 C 0 I 591 s canFam3.chr3 14317377 28 + 91889043 ----AGTTCATTAATTATTTCAGTTAGGATTT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1236750 28 - 11655695 ----GACCCATTTATTAATTAGCCTAGCATTC i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76457849 2688 + 120421639 I e panPan2.chr5 20280177 24 + 183735486 I a score=1808857.000000 s hg38.chr5_GL383530v1_alt 34652 135 + 101241 ATTTCTAAATGAGCTTAATAGTGGGGAGTCAAATG------------------AA-------GGGACAGTTACAGG---CATCTTTCTCTATAAGAATATAAAATTGATGGCAGATTTTGG-GAAATGGAG-TTTTTGCATTTGCATTTAAGTTGCTCACCAGGA s panTro5.chr5 20263402 135 + 181907262 ATTTCTAAATTAGCTTAATAGTGGAGAGTCAAATG------------------AA-------GGGACAGTTACAGG---CATCTTTCTCAATAAGAATAAAAAATTGATGGCAGATTTTGG-GAAATGGAG-TTTTTGCATTTGCATTTAAGTTGCTCACCAGGA i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4766547 135 - 13748885 ATTTCTAAATTAGCTTAATAGTGGAGAGTCAAATG------------------AA-------GGGACAGTTACAGG---CATCTTTCTCAATAAGAATATAAAATTGATGGCAGATTTTGG-GAAATGGAG-TTTTTGCATTTGCATTTAAGTTGCTCACCAGGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53803315 132 - 163208435 ATTTCTAAATTAGCTTAATAGTGGAGAGTCAAATG------------------AA-------GGGACAGTTATAGG---CATCTTTCTC---AAGAATATAAAATTGATGGCAGATTTTGG-GAAATGGAG-TTTTTGCATTTGCATTTAAGTTGCTCACCAGGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87829693 135 - 180051392 ATTTCTAAATTAGCTTAATAGTGGAGAGTCAAATG------------------AA-------GGGAAGGTTACAGG---CATCTTTCTTAATAAGAATATAAAATTGCTGGCAGGTTTTGG-AAAATGGAG-TTTTTGCATTGGCATTTAAGTTGCTCACCAGGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87934109 135 - 181584905 ATTTCTAAATTAGCTTAATAGTGGAGAGTCAAATG------------------AA-------GGGAAGGTTACAGG---CATCTTTCTTAATAAGAATATAAAATTGCTGGCAGGTTTTGG-AAAATGGAG-TTTTTGCATTGGCATTTAAGTTGCTCACCAGGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1157022 135 - 8785636 ATTTCTAAATTAGCTTAATAGTGGAGAGTCAAATG------------------AA-------GGGAAGGTTACAGG---CATCTTTCTTAATAAGAATATAAAATTGCTGGCAGGTTTTGG-AAAATGGAG-TTTTTGCATTGGCATTTAAGTTGCTCACCAGGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1625247 135 + 27333823 ATTTCTAAATTAGCTTAATAGTGGAGAGTCAAATG------------------AA-------GGGAAGGTTACAGG---CATCTTTCTTAATAAGAATATAAAATTGCTGGCAGGTTTTGG-AAAATGGAG-TTTTTGCATTGGCATTTAAGTTGCTCACCAGGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1895336 135 - 91010382 ATTTCTAAATTAGCTTAATAGTGGAGAGTCAAATG------------------AA-------GGGAAGGTTACAGG---CATCTTTCTTAATAAGAATATAAAATTGCTGGCAGGTTTTGG-AAAATGGAG-TTTTTGCATTGGCATTTAAGTTGCTCACCAGGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2006382 135 + 5179401 ATTTCTAAATTAGCTTAATAGTGGAGAGTCAAATG------------------AA-------GGGAAAGTTACAGG---CATCTTTCTTAATAAGAATATAAAATTGCTGGCAGGTTTTGG-AAAATGGAG-TTTTTGCATTGGCATTTAAGTTGCTCACCAGGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7712438 132 - 21726897 ATTTCTAAATTAGCTTAATAGTGGAGAGTCAAATG------------------AA-------GGGAAGGTTACAGG---CATCTTTCT---TAAGAATATAAAATTGATGGCACGTTTTGG-AAAATGGAG-TTTTTGCATTGGCATTTAAATTGCTCACCAGGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112533310 129 + 204313951 ATTTCTAAATTAGCTTAATAATGGAGAGTCAAATG------------------AA-------GGCACAGTTACAGG---CATTTTTCTC------AATATAAAATTGATGGTAGATTTTGG-AAAATGGAG-TTTTTGCATTTGCATTTAAGTTGCTCACCAGGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44978965 135 + 71252344 ATTTCTAAATTAGCTTAATAATGGAGACTCAAATA------------------AA-------GGGACAGTTACAGG---CATTTTTCTCAATAAGAATATAAAATTGATGGTAGATTTTGG-AAAACGGAG-TTTTTGCATTTGCATTTAAGTTGCTCACCAGGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 342682 136 - 1393929 ATTTCTAAATTAGCTTAATAATGGAGAGTCAAATG------------------AA-------GGGACAGTTACAGG---CATTTTTCTCAATAAGAATATAAAATTGATGGTAGATTTTGGAAAAATGGAG-TTTTTGCATTTGTGTTTAAGTTGCTCACCAGGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1419922 135 - 15889662 ATTTCTAAATTAGCTTAATAATGGAGAGTCAAATG------------------AA-------GGGACAGTTACAAG---CATTTTTCTCAATAAGAATATAAAATTGATGGCAGATTTTGG-AAAATGGAG-TTTTTGCATTTGCATTTAAGTTGCTCACCAGGA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84830682 141 + 108143057 ATTTC-----TAACTTCATAATGGAGAGTCAAAAGAATATATAT--------AAA-------GGGACAATTACAGT---CATATCTCTCGATAAGAATATGAAATTTATGGCAGATTTTGG-AAAGTGGAATTTTTTACATTTGCATCTAAGTTGCTCACCAGGA i micMur3.chr12 C 0 I 1207 s proCoq1.NW_012147189v1 601021 145 - 10520994 ATTTCCAAATTAGCTTCATAGTGGAGAGTCAAATGAATAAATAT--------AAA-------GGGACAATTACAGG---CATCTCTCTCAATAAGAATATAAAACTTATGGCAGATTTTGG-AAAATGGAA-TTTTTACATTTGCGTTTAAGTTGCTCACCAGGA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1301957 130 - 29863360 ATTTCTAAATTAGCTTAATAGTGGCGATTC-----------------------AA-------GGGACAGTGACATG---CATTTCTCTCAATAAGGAAGTAACATTTCTGGCAGATCTTGG-AAGGCAGAA-TATTTGCATTTGCATTTGAATTGCTCACCAGGA i otoGar3.GL873536 I 591 C 0 s canFam3.chr3 14317405 153 + 91889043 ATTTATAAATGAGCTTTATAATGGAGAATCAAAGGAATAAAAATGAGGGGGCAGA-------GATATAGCTACAGG---CATCTCTTTCAATACAAATATAAAATTTATGGCAAATTTTGG-AAAGTAGAG-TTCCTATATTCTCATTTAAGTTGCTCCCCAGGA i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1236778 145 - 11655695 ATTTATAAATTGCCTTAATGGTGGAGAGTTAAATG------------------AATACACATAAGTCAGGTATAGGCATCATCTCATTCAGAGAGAAGATGAAGATTGTGGCAGATTTTGG-AAAATGGAG-TTTTTGTATTTGTACTTCAGTTGCTCATCAGGA i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76457849 2688 + 120421639 I e panPan2.chr5 20280177 24 + 183735486 I a score=637863.000000 s hg38.chr5_GL383530v1_alt 34787 57 + 101241 CACTGAAGATTATGTTTACATTTGTTTG-ACTGACTGTTGTCT----------CAGGTTGCTGTGTCT s panTro5.chr5 20263537 57 + 181907262 CACTGAAGATTATGTTTACATTTGTTTG-ACTGACTGTTGTCT----------CAGGTTGCTGTGTCT i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4766682 57 - 13748885 CACTGAAGATTATGTTTACATTTGTTTG-ACTGACTGTTGTCT----------CAGGTTGCTGTGTCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53803447 57 - 163208435 CACTGAAGATTCTATTTACATTTGTTTG-ACTGACTGTTGTCT----------CAGGTTGCTGTGTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87829828 57 - 180051392 CACTGAAGATTATGTTTACGTTTATTTG-CCTGACCGTTGTCT----------CAGGTTGCTGTGTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87934244 57 - 181584905 CACTGAAGATTATGTTTACGTTTATTTG-CCTGACCGTTGTCT----------CAGGTTGCTGTGTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1157157 57 - 8785636 CACTGAAGATTATGTTTACGTTTATTTG-CCTGACCGTTGTCT----------CAGGTTGCTGTGTCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1625382 57 + 27333823 CACTGAAGATTACGTTTACGTTTATTTG-CCTGACCATTGTCT----------CAGGTTGCTGTGTCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1895471 57 - 91010382 CACTGAAGATTATGTTTACGTTTATTTG-CCTGACCGTTTTCT----------CAGGTTGCTGTGTCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2006517 57 + 5179401 CACTGAAGATTATGTTTACGTTTATTTG-CCTGACCGTTGTCT----------CAGGTTGCTGTGTCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7712570 57 - 21726897 CACTGAAGATTATGTTTACGTTTATTTG-CCTGACCGTTGTCT----------CAGGTTGCTGTGTCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112533439 57 + 204313951 CACTGAAGATTATGTTTAGATTTGTTTG-ACTGACTGTTGTCT----------CAGGTTGCTGTGTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44979100 57 + 71252344 CACTGAAGATTATGTTTAGATTTGTTTG-ACTGACTGTTGTCT----------CGGGTTGCTGTGTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 342818 57 - 1393929 CACTGAAGATTATGTTTAGATTTGTTTG-ACTGACTGTTGTCT----------CAGGTTGCTGTGTCT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1420057 57 - 15889662 CACTGAAGATTATGTTTAGATTTGTTTG-ACTGACTGTTGTCT----------CAGGTTGCTGTGTCT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 601166 58 - 10520994 AACTAAAGACAATGTTTGGATTTGTTTGAGGCAACTGTTGCCT----------CAGGTTGCTGTGTCT i proCoq1.NW_012147189v1 C 0 I 73 s otoGar3.GL873536 1302087 53 - 29863360 AACAAAGGCCTGTGTTTGGGTTTGTTTG-----CTTGGTGCCT----------TAGGTTGTTGTGTCT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14317559 56 + 91889043 ACTTGAAGAATACATGTGGATTTGTTTG-ATGGACT-TTTTTT----------CAATTTACTGTGTCT i canFam3.chr3 I 1 I 44 s dasNov3.JH570378 1236923 66 - 11655695 -AATGAAGAACATGTTTGGATTAGCTTG-ATCCACTGTTGCCTGTATTTACAGGAGGGGGTTTTGGCT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84830823 1207 + 108143057 I e mm10.chr13 76457849 2688 + 120421639 I e panPan2.chr5 20280177 24 + 183735486 I a score=617896.000000 s hg38.chr5_GL383530v1_alt 34844 73 + 101241 CCT---------------------------GGGGATGGCTCTGTGTGGTCCACCCAAAGCTGAACAGCTGCTTTAGATCTTTATTGTTGTCGTAGCAGTG s panTro5.chr5 20263594 73 + 181907262 CCT---------------------------GGGGATGGCTCTGTGTGGTCCACCCAAAGCTGAACAGCTGCTTTAGATCTTTATTGTTGCAGTAGCAGTG i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4766739 73 - 13748885 CCT---------------------------GGGGATGGCTGTGTGTGGTCCACCCAAAGCTGAACAGCTGCTTTAGATCTTTATTGTTATAGTAGCAGTG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53803504 73 - 163208435 CCT---------------------------GGGGATGACTCTGTGCGGTCCACCCAAAGCTGAACAGCTGCTTTAGATCTTTATTGTTGGAGTAGCAATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87829885 73 - 180051392 GCT---------------------------GGGGATGGCTCTGTGCGGTCCACCCAAAGCTGAACAGCTACTTTCGATCTTCATTGTTGGAGTAGCAATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87934301 73 - 181584905 GCT---------------------------GGGGATGGCTCTGTGCGGTCCACCCAAAGCTGAACAGCTACTTTCGATCTTCATTGTTGGAGTAGCAATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1157214 73 - 8785636 GCT---------------------------GGGGATGGCTCTGTGCGGTCCACCCAAAGCTGAACAGCTACTTTCGATCTTCATTGTTGGAGTAGCAATG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1625439 73 + 27333823 GCT---------------------------GGGGATGGCTCTGTGCGGTCCACCCAAAGCTGAACAGCTACTTTCGATCTTCATTGTTGGAGTAGCAATG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1895528 73 - 91010382 GCT---------------------------GGGGATGGCTCTATGCGGTCCACCCAAAGCTGAACAGCTACTTTCGATCTTCATTGTTGGAGTAGCAATG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2006574 73 + 5179401 GCT---------------------------GGGGATGGCTCTGTGCGGTCCACCCAAAGCTGAACAGCTACTTTCGATCTTCATTGTTGGAGTAGCAATG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7712627 73 - 21726897 GCT---------------------------GGGGATGGCTCTGTGCGGTCCACCCAAAGCTGAACAGCTGCTTTCTATCTTCATTGTTGGAGTAGCAGCG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112533496 74 + 204313951 CCTG--------------------------GGGGAGGGCTCTGTGAGGTCCATCCCGAGCTGAACGGCTGCTTTAGATCTTCATTGTTGGAGCAGCTATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44979157 74 + 71252344 CCTG--------------------------GGGGAGGGCTCTGTGAGGCCCATCCCAAGCTGAACAGCTGCTTTAGATCTTCATTGTTGGAGCAGCGATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 342875 74 - 1393929 CCTG--------------------------GGGGAGGGCTCTGTGAGGTCCATCCCAAGCTGAACAGCTGCTTTAGATCTTCATTGTTGGAGCAGCGATG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1420114 73 - 15889662 CCTG--------------------------GGGGAGGGCTCTGTGAGGTCCATCCCAAGC-AAACAGCTGCTTTAGATCTTCATTGTTGGAGCAGCAATG i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1302140 63 - 29863360 ACTG--------------------------AGGAAGGGACCTGGGAGGAACA----------GACAGCTGTGGGAGGTCTCC-TTGTTGGAACACCAGTG i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14317659 66 + 91889043 ACTG--------------------------AGAGAGAGTTTTATGAGGACCATCTAAAGCTGA-------TATTCAGTTTTTGTTTTAAGAACAGCAGT- i canFam3.chr3 I 44 C 0 s dasNov3.JH570378 1236989 93 - 11655695 -CTGGATCTAAGGCTAACACAGGGCTCTTCGAGGCAGACTCTGTG-GGTCCATC-AAGGCTGA-CAGCTGCATTAGGCCTTCCTTGTTACA--AGCAAC- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84830823 1207 + 108143057 I e proCoq1.NW_012147189v1 601224 73 - 10520994 I e mm10.chr13 76457849 2688 + 120421639 I e panPan2.chr5 20280177 24 + 183735486 I a score=805386.000000 s hg38.chr5_GL383530v1_alt 34917 69 + 101241 GAGACCTAAAGACCGTAGGGAGTCCAGGGCGATTAGAATGCAgcttgccaaatttaattcatttgagta s panTro5.chr5 20263667 69 + 181907262 GAGACCTAAAGACCGTAGGGAGTCCAGGGCGATTAGAATGCAgcttgccaaatttaattcatttgagta i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4766812 69 - 13748885 GAGACCTAAAGACCGTAGGGAGTCCAGGGTGATTAGAATGCAgcttgctaaatttaattcatttgagta i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53803577 69 - 163208435 GAGACCTAAAGACCATAGGGAGTCCAAGGCGATTACAATGCAgcttgccaaatttaattcatttgagta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87829958 69 - 180051392 GAGACCTAAAGACCGTAGGGAGTTCAAGGCGGTTAGAACACAgcttgccaaatttaattcatttgagtg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87934374 69 - 181584905 GAGACCTAAAGACCATAGGGAGTTCAAGGCGGTTAGAACACAgcttgccaaatttaattcatttgagtg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1157287 69 - 8785636 GAGACCTAAAGACCATAGGGAGTTCAAGGCGGTTAGAACACAgcttgccaaatttaattcatttgagtg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1625512 69 + 27333823 GAGACCTAAAGACCATAGGGAGTTCAAGGCGGTTAGAACACAgcttgccaaatttaattcatttgagtg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1895601 69 - 91010382 GAGACCTAAAGACCAGAGGCAGTTCAAGGCGGTTAGAACACAgcttgccaaatttaattcatttgagtg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2006647 69 + 5179401 GAGACCTAAAGACCATAGGGAGTTCAAGGCGGTTAGAACACAgcttgccaaatttaattcatttaagtg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7712700 69 - 21726897 GAGACCTAAAGACCATAGGGAGTTTAAGGCGGTTAGAACACAgcttgccaaatttaattcatttgagtg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112533570 69 + 204313951 GAGACATAAAGACCATATGGAGTCCAAGGCCATTAGAACACAgcttgccaaatttaattcatttgagta i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44979231 69 + 71252344 GAGACATAAACACCATACGGAGTCCAAGGCCATTAGAATGCAgcttgccaaatttaattcatttgagta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 342949 69 - 1393929 GAGACATAAAGACCATACGGAGCCCAAGGCCATTAGAATGCAgcttgccaaatttaattcatttgagta i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1420187 69 - 15889662 GAGACATAAAGACCATACAGAGTCCAAGGCCATTAGAATGCAgctttccaaatttaattcatttgagta i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 601297 69 - 10520994 GAGACCTAAAGACCACATAGAGCCCAAGGCAATTACAAcagagcttccccaatttaattcatttgagta i proCoq1.NW_012147189v1 I 73 C 0 s otoGar3.GL873536 1302203 67 - 29863360 --GGACCGAGGACCACACCAAGCCCAAGGCAATTAGAACACAGCTTCCCAAATTTAATTCATTTGAACA i otoGar3.GL873536 C 0 I 1866 s canFam3.chr3 14317725 69 + 91889043 GAGACCTAAGGCCTACATGAGGCCCAAGGCAATTAGAATAGAGCCtcccaaatttaattcatttgagta i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1237082 54 - 11655695 AAGACCGAAAGCTCATGTGGGGCCCCTGACAAGTAGAACAGAGCTACCCAAATT--------------- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84830823 1207 + 108143057 I e mm10.chr13 76457849 2688 + 120421639 I e panPan2.chr5 20280177 24 + 183735486 I a score=1029471.000000 s hg38.chr5_GL383530v1_alt 34986 96 + 101241 tcatcatctgattagcctcatagatacacatgactttattatttacctaatgtttttcttttaa-gtcaactaaattttgtgttttaaataaattat s panTro5.chr5 20263736 96 + 181907262 tcatcatctgattagcgccatatatacacatgactttattatttacctaatgtttttcttttaa-gtcaactaaattttgtgttttaaataaattat i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4766881 96 - 13748885 tcatcatctgattagtgccatatatacacgtgactttattatttacctaatgtttttcttttaa-gtcaactcaattttgtgttttaaataaattat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53803646 96 - 163208435 tcatcatctgattagtgccatatatacacatgactttattatttacctaatgtttttcttttaa-gtcaactcaattttgtgttttaaataaattct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87830027 96 - 180051392 tcatcatctaattagtgccgtatacacacatgactttattatttacctaatgtttttcttttaa-gtcaactcgattttgtgttttaaataaattat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87934443 96 - 181584905 tcatcatctaattagtgccgtatacacacatgactttattatttacctaatgtttttcttttaa-gtcaactcgattttgtgttttaaataaattat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1157356 96 - 8785636 tcatcatctaattagtgccgtatacacacatgactttattatttacctaatgtttttcttttaa-gtcaactcgattttgtgttttaaataaattat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1625581 96 + 27333823 tcatcatctaattagtgccatatacacacatgactttattatttacctaatgtttttcttttaa-gtcaactcgattttgtgttttaaataaattat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1895670 96 - 91010382 tcgtcatctaattagtgccatatacacacatgactttattatttacctaatgtttttcttttaa-gtcaactcgattttgtgttttaaataaattat i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2006716 97 + 5179401 tcatcatctaattagtgccatatgcacacatgactttattatttacctaatgtttttcttttaaggtcaactcgattttgtgttttaattaaattat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7712769 95 - 21726897 tcatcatctaattagtgccatatatacacatgactttattatttacctaatgtttttcttttaa-gtcaactcaattttgtgtttt-attaaattat i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112533639 96 + 204313951 tcatcatctgattcgaaccgtatatacacatgactttattatttacctaatgtttttattttaa-gtcaactcaattttgtgttttcaatgaataat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44979300 96 + 71252344 tcatcatctgattcatgccgtatatacgtataactttattatttacctaatgtttttcttttaa-gtcaactcaattttgtgttttaaataaataat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 343018 96 - 1393929 tcatcatctgatttgtgccgtatatacatatgactttattatttacctaatgtttttcttttaa-gtcaactcaattttgtgttttaaataaataat i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1420256 96 - 15889662 tcatcatctgattcgtgccgtatatacacatgatttgattatttacctaatgtttttcttttaa-gtaaactcaattttgtgttttaaataaataat i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 601366 96 - 10520994 taatcatctggtttttgccatatgtacacatgactttattgtttgcctaaagtttttcttttaa-atcaactcaattttgtgttttaaataaattac i proCoq1.NW_012147189v1 C 0 C 0 s canFam3.chr3 14317794 95 + 91889043 ttgtcatttcatttttgccatatgtgttcacaaccttcattattacctacagattctcctgtaa-attcacacaa-tttgggtttgaaaggaaattt i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1237136 93 - 11655695 ---TCATCTgatctttgtcaaatatacacatgacctttatatttacacaacgttttccccttaa-atcagctcaattttgttaatagaatgaattac i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84830823 1207 + 108143057 I e mm10.chr13 76457849 2688 + 120421639 I e otoGar3.GL873536 1302270 1866 - 29863360 I e panPan2.chr5 20280177 24 + 183735486 I a score=23179.000000 s hg38.chr5_GL383530v1_alt 35082 4 + 101241 ttta- s panTro5.chr5 20263832 4 + 181907262 ttta- i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4766977 4 - 13748885 ttta- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53803742 4 - 163208435 ttta- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87830123 4 - 180051392 ttta- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87934539 4 - 181584905 ttta- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1157452 4 - 8785636 ttta- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1625677 4 + 27333823 ttta- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1895766 4 - 91010382 ttta- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2006813 4 + 5179401 ttta- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7712864 4 - 21726897 ttta- i colAng1.NW_012115488v1 C 0 C 0 s proCoq1.NW_012147189v1 601462 4 - 10520994 ttta- i proCoq1.NW_012147189v1 C 0 C 0 s canFam3.chr3 14317889 4 + 91889043 tata- i canFam3.chr3 C 0 I 80 s dasNov3.JH570378 1237229 4 - 11655695 -ttaa i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84830823 1207 + 108143057 I e mm10.chr13 76457849 2688 + 120421639 I e otoGar3.GL873536 1302270 1866 - 29863360 I e aotNan1.NW_018506370v1 1420352 0 - 15889662 C e cebCap1.NW_016107830v1 343114 0 - 1393929 C e saiBol1.JH378106 44979396 0 + 71252344 C e calJac3.chr2 112533735 0 + 204313951 C e panPan2.chr5 20280177 24 + 183735486 I a score=27630.000000 s hg38.chr5_GL383530v1_alt 35086 4 + 101241 aaag s panTro5.chr5 20263836 4 + 181907262 aaag i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4766981 4 - 13748885 aaag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53803746 4 - 163208435 aaag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87830127 4 - 180051392 aaag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87934543 4 - 181584905 aaag i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1157456 4 - 8785636 aaag i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1625681 4 + 27333823 aaag i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1895770 4 - 91010382 aaag i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2006817 4 + 5179401 aaag i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7712868 4 - 21726897 aaag i colAng1.NW_012115488v1 C 0 C 0 s proCoq1.NW_012147189v1 601466 4 - 10520994 aaag i proCoq1.NW_012147189v1 C 0 I 468 s dasNov3.JH570378 1237233 4 - 11655695 aagg i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14317893 80 + 91889043 I e micMur3.chr12 84830823 1207 + 108143057 I e mm10.chr13 76457849 2688 + 120421639 I e otoGar3.GL873536 1302270 1866 - 29863360 I e aotNan1.NW_018506370v1 1420352 0 - 15889662 C e cebCap1.NW_016107830v1 343114 0 - 1393929 C e saiBol1.JH378106 44979396 0 + 71252344 C e calJac3.chr2 112533735 0 + 204313951 C e panPan2.chr5 20280177 24 + 183735486 I a score=8360.000000 s hg38.chr5_GL383530v1_alt 35090 2 + 101241 ga s panTro5.chr5 20263840 2 + 181907262 ga i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4766985 2 - 13748885 ga i gorGor5.CYUI01014999v1 C 0 I 8 s nomLeu3.chr2 53803750 2 - 163208435 ga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87830131 2 - 180051392 aa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87934547 2 - 181584905 aa i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1157460 2 - 8785636 aa i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1625685 2 + 27333823 ga i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1895774 2 - 91010382 ga i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2006821 2 + 5179401 ga i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7712872 2 - 21726897 ga i colAng1.NW_012115488v1 C 0 C 0 s dasNov3.JH570378 1237237 2 - 11655695 aa i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14317893 80 + 91889043 I e micMur3.chr12 84830823 1207 + 108143057 I e proCoq1.NW_012147189v1 601470 468 - 10520994 I e mm10.chr13 76457849 2688 + 120421639 I e otoGar3.GL873536 1302270 1866 - 29863360 I e aotNan1.NW_018506370v1 1420352 0 - 15889662 C e cebCap1.NW_016107830v1 343114 0 - 1393929 C e saiBol1.JH378106 44979396 0 + 71252344 C e calJac3.chr2 112533735 0 + 204313951 C e panPan2.chr5 20280177 24 + 183735486 I a score=29897.000000 s hg38.chr5_GL383530v1_alt 35092 13 + 101241 tttt------------ttttttttt s panTro5.chr5 20263842 13 + 181907262 tttt------------ttttttttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20280201 13 + 183735486 ttnt------------ttttttttt i panPan2.chr5 I 24 C 0 s gorGor5.CYUI01014999v1 4766995 13 - 13748885 tttt------------ttttttttt i gorGor5.CYUI01014999v1 I 8 C 0 s nomLeu3.chr2 53803752 11 - 163208435 --at------------ttttttttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87830133 19 - 180051392 tttctttttt------ttttttttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87934549 19 - 181584905 tttctttttt------ttttttttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1157462 25 - 8785636 tttcttttttcttttcttttttttt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1625687 18 + 27333823 tttcttttt-------ttttttttt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1895776 21 - 91010382 tttctttctttt----ttttttttt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2006823 11 + 5179401 tttc--------------ttttttt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7712874 13 - 21726897 tttc------------tttgttttt i colAng1.NW_012115488v1 C 0 C 0 s dasNov3.JH570378 1237239 13 - 11655695 ------------attatgtattcct i dasNov3.JH570378 C 0 I 685 e canFam3.chr3 14317893 80 + 91889043 I e micMur3.chr12 84830823 1207 + 108143057 I e proCoq1.NW_012147189v1 601470 468 - 10520994 I e mm10.chr13 76457849 2688 + 120421639 I e otoGar3.GL873536 1302270 1866 - 29863360 I e aotNan1.NW_018506370v1 1420352 0 - 15889662 C e cebCap1.NW_016107830v1 343114 0 - 1393929 C e saiBol1.JH378106 44979396 0 + 71252344 C e calJac3.chr2 112533735 0 + 204313951 C a score=1597177.000000 s hg38.chr5_GL383530v1_alt 35105 287 + 101241 tttttgagatggagtctcactctgtcgcccaggctggagtgcagtgacgcgatcttggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggtgcccaccaccatgcccggctaattttttgtattttttagtagagacggggtttcaccgtattagccaggatggtctcgatctcctgaccgcatgatccacccgccttggcctcctaaagtgctgggattacaggcgtgagccactgcgcctggcc s panTro5.chr5 20263855 287 + 181907262 tttttgagatggagtctcgctctgtcgcccaggctggagtgcagtgatgcgatcttggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcttcctgagtagctgggactacaggtgcccaccaccacgcccggctaattttttgtgttttttagtagagacggggtttcaccgtattagccaggatggtctcgatctcctgaccacatgatccacccgccttggcctcctaaagtgctgggattacaggcttgagccactgcgcctggcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20280214 287 + 183735486 tttttgagatggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgccagccactacgcccggctaatttttttgtatttttagtagagacggggtttcaccatgttagccaggatagtctcgatctcctgaccacatgatccacccgccttggcctcctaaagtgctgggattacaggcgtgagccactgcgcctggcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4767008 287 - 13748885 tttttgagatggagtctcgctctgtcgcccaggctggagtgcagtgacgcgatcttggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggtgcccgccaccatgcctggctaattttttgtattttttagtagagacggggtttcaccgtattagccaggatggtctcgatctcctgaccacatgatccacccgccttggcctcctaaagtgctgggattacaggcgtgagccactgtgtctggtc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53803763 287 - 163208435 tttttgagatggagtctcgctctgtcgcccaggctggagtgcagtgacaggatcttggctcactgcaagctctgcctcccgggttcacgccattctactgcctcagcctcctgagtagctgggactacaggtgcccgccaccatgtccggctaattttttgtattttttagtagagacggggtttcatcgtgttagccaggatggtcttgatctcctgacctcatgatctgcctgcatcggcctcccaaagtgctgggattacaggcgtgagccactgtgcctggcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87830152 286 - 180051392 tttttgagactgagtctcgctctgttgcccaggctggagtgcagtggcgcgatctcagctcactgcaagctccatctcccaggttcacaccgttctcttgcctcagcctcctgagtaactgggactacaggtgcgtgccaccgtgtctggctaattttttgtgttttttagtagagacggggtttcactgtgttagccaggatggtcttgatctcctgacctcatgatccgcccgcctcagcctcc-aaagtgctgggattacaggtgtgagccactgtgcctggcc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87934568 286 - 181584905 tttttgagactgagtctcgctctgttgcccaggctggagtgcagtggcgcgatctcagctcactgcaagctccatctcccaggttcacaccgttctcttgcctcagcctcctgagtaactgggactacaggtgcgtgccaccgtgtctggctaattttttgtgttttttagtagagacggggtttcactgtgttagccaggatggtcttgatctcctgacctcatgatccgcccgcctcagcctcc-aaagtgctgggattacaggtgtgagccactgtgcctggcc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1157487 286 - 8785636 tttttgagactgagtctcgctctgttgcccaggctggagtgcagtggcgcgatctcagctcactgcaagctccatctcccaggttcacaccgttctcttgtctcagcctcctgagtaactgggactacaggtgcgtgccaccatgtctggctaattttttgtgttttttagtagagacggggtttcactgtgttagccaggatggtcttgatctcctgacctcatgatccgcccgcctcagcctcc-aaagtgctgggattacaggtgtgagccactgtgcctggcc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1625705 286 + 27333823 tttttgagactgagtctcgctctgctgcccaggctggagtacagtggcacgatctcagctcactgcaagctccatctcccgggttcacaccgttctcttgcctcagcctcctgagtaactgggactacaggtgcatgccaccgtgtctggctaattttttgtgttttttagtagagacggggtttcactgtgttagccaggatggtcttgatctcctgacctcatgatccgcccgcctcagcctcc-aaagtgctgggagtacaggtgtgagccactgtgcctggcc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1895797 286 - 91010382 tttttgagactgagtctcgctctgttgcccaggctggagtgcagtgacacgatctcagctcactgcaagctccatctcccgggttcacaccgttctcttgcctcagcctcctgagtagctgggactacaggtgcgtgccaccgtgtctggctaattttttgtgtttttcggtagagacgggctttcactgtgttagccaggatggtcttgatctcctgacctcatgatccgcccgcctcagcctcc-aaagtgctgggattacaggtgtgagccactgtgcctggcc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2006834 286 + 5179401 tttttgatactgagtctcgctctgttgcccaggctggagtgcagtggcgcgatctcagctcactgcaagctccatctcctgggttcacgccgttctcttgcctcagcctcctgagtaactgggactacaggtgcatgccaccgtgtctggctaattttttgtgttttttagtagagatggggtttcactgtgttagccaggatggtcttgatctcctgacctcatgatccgcccgcctcagcctcc-aaagtgctgggattacaggtgtgagccactgtgcctggcc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7712887 286 - 21726897 tttttgagactgagtctcgctctgttgcccaggctggagtgcagtggtgcgatctcagctcattgcaagctccatctcccgggttcacaccattctcttgcctcagcctcctgagtagctgggactacaggtgcgtgccaccatgtctggctaattttttgtgttttttagtagagatggggtttcactgtgttagccaggatggtcttgatctcctgacctcataatctgcccgcctcagcctcc-aaagtgctgggattacaggcgtgagccactgtgcctggcc i colAng1.NW_012115488v1 C 0 C 0 e canFam3.chr3 14317893 80 + 91889043 I e micMur3.chr12 84830823 1207 + 108143057 I e proCoq1.NW_012147189v1 601470 468 - 10520994 I e dasNov3.JH570378 1237252 685 - 11655695 I e mm10.chr13 76457849 2688 + 120421639 I e otoGar3.GL873536 1302270 1866 - 29863360 I e aotNan1.NW_018506370v1 1420352 0 - 15889662 C e cebCap1.NW_016107830v1 343114 0 - 1393929 C e saiBol1.JH378106 44979396 0 + 71252344 C e calJac3.chr2 112533735 0 + 204313951 C a score=4162853.000000 s hg38.chr5_GL383530v1_alt 35392 450 + 101241 tttaaaaggaaatttttacattactagcccaaattagaaaaatca---ttttttcccaaaatagatggtaactataaaaatgaataggatgaaaaaccagatgaagtacagtcatgcattgcataatgacattctggtcagtgatgaaatgcatatacaatagtggttccagaagattataatactata--ttttacagaaccttttctatgtttagatatgtttagatacacaaatggttaccattgtgttaaatttgcctatagtattcagtacggtaacttactgtgtaggttggtagcctcagagcaacaggctataccatccagcctaggcgtatagtaggctattccatctcaatttgtgtaagtacattccatgatgttcataaaacaacaaaatcacccacaatgcatttctcagaatgtatccttattgttaagtgacaaatgact s panTro5.chr5 20264142 450 + 181907262 tttaaaaggaaatttttacattactagcccaaattagaaaaatca---ttttttcccaaaatagatggtaactataaaaatgaataggatgaaaaaccagatgaagtacagtcatgcgttgcataatgacattctggtcagtgatgaaatgcatatacaatagtggttccagaagattataatactgta--ttttacagaaccttttctatgtttagatatgtttagatacacaaatggttaccattgtgttaaatttgcctatagtattcagtacggtaacttactgtataggttggtagcctcagagcaacaggctataccatccagcctaggcgtatagtaggctattccatctcaatttgtgtaagtacattccatgatgttcataaaacaacaaaatcacccacaatgcatttctcggaatgtatccttattgttaagtgacaaatgact i panTro5.chr5 C 0 C 0 s panPan2.chr5 20280501 450 + 183735486 tttaaaaggaaatttttacattactagcccaaattagaaaaatta---ttttttcccaaaatagatggtaactataaaaatgaataggatgaaaaaccagatgaagtacagtcatgcattgcataatgacattctggtcagtgatgaaatgcatatacaatagtggttccagaagattataatactgta--ttttacagaaccttttctatgtttagatatgtttagatacacaaatggttaccattgtgttaaatttgcttatagtattcagtacggtaacatactgtataggtttgtagcctcagagcaacaggctataccatccagcctaggcgtatagtaggctattccatctcaatttgtgtaagtacattccatgatgttcataaaacaacaaaatcacccacaatgcatttctcagaatgtatccttattgttaagtgacaaatgact i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4767295 450 - 13748885 tttaaaaggaaatttttacattactagcccaaattagaaaaatca---ttttttcccaaaatagatggtaactataaaaatgaataggatgaaaaaccagatgaagtacagtcatgcattgcataatgacattctggtcagtgatgaaatgcatatacaatagtggttccagaagattataatactgta--ttttacagaaccttttctatgtttagatatgtttagatacacaaatggttaccattgtgttaaatttgcctatagtattcagtacggtaacatactgtataggtttgtagcctcagagcaacaggctataccaaccagcctaggcgtatagtaggctattccatctcaatttgtgtaagtacattccatgatgttcataaaacaacaaaatcacccacaatgcatttctcagaatgtatccttattgttaagtgacaaatgact i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53804050 442 - 163208435 tttaagaggaaatttttacattactagcccaaattagaaaaatca---ttttttcctaaaatagatggtaactataaaaatgaataggatgaaaaaccagatgaagtacagtcatgcattgcataatgacattctggtcagtgatgaaatgcatatacaatagtggttccagaagattataatactatattttttacagtaccttttc----------tatgtttagatacacaaatggttaccattgtgttacatttgcctatggtattcagtgtggtaacatactgtataggtttgtagcctcaaagcaacaggctataccatccagcctaggtgtatagtaggctattccatctcagtttgtgtaagtacattccatgatgttcataaaacaacaaaatcacccataatgcatttctcagaatgcatccttattgttaagtgacaaatgact i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87830438 444 - 180051392 tttaaggggaaatttttacattagtagcccaaattagaaaaatca---ttttttcctaaaatagatggtaactataaaaatgaataggatgaaaaaacagatgaagtacagtcatgcattgcataatgacatt-tggtcggtgatgaaatgcatacacaatagtggttccagaagattataatactgtg-gtttaacagtaccttttctatgtttagatatgtttacatacacaaatggttaccattgtgttacatttgcctatagttttcagtatggtaacatactgtatagatttgtagcctcaaagcaataggctataccatacagcctaggtgtatagtaagctataccgtctcagtttgtgtaagtacattccatgaggttcatagaacaacagaatcatccacaacacatttctcag------tccctattgttaagtgacaaatgact i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87934854 444 - 181584905 tttaaggggaaatttttacattagtagcccaaattagaaaaatca---ttttttcctaaaatagatggtaactataaaaatgaataggatgaaaaaacagatgaagtacagtcatgcattgcataatgacatt-tggtcggtgatgaaatgcatacacaatagtggttccagaagattataatactgtg-gtttaacagtaccttttctatgtttagatatgtttacatacacaaatggttaccattgtgttacatttgcctatagttttcagtatggtaacatactgtatagatttgtagcctcaaagcaataggctataccatacagcctaggtgtatagtaagctataccgtctcagtttgtgtaagtacattccatgaggttcatagaacaacagaatcatccacaacacatttctcag------tccctattgttaagtgacaaatgact i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1157773 444 - 8785636 tttaaggggaaatttttacattagtagcccaaattagaaaaatca---ttttttcctaaaatagatggtaactataaaaatgaataggatgaaaaaacagatgaagtacagtcatgcattgcataatgacatt-tggtcggtgatgaaatgcatacacaatagtggttccagaagattataatactgtg-gtttaacagtaccttttctatgtttagatatgtttacatacacaaatggttaccattgtgttacatttgcctatagttttcagtatggtaacatactatatagatttgtagcctcaaagcaataggctataccatacagcctaggtgtatagtaagctataccgtctcagtttgtgtaagtacattccatgaggttcatagaacaacagaatcatccacaacacatttctcag------tccctactgttaagtgacaaatgact i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1625991 444 + 27333823 tttaaagggaaatttttacattagtagcccaaattagaaaaatca---ttttttcctaaaatagatggtaactataaaaatgaataggatgaaaaaacagatgaagtacagtcatgcattgcataatgacatt-tggtcggtgatgaaatgcatacacaatagtggttccagaagattataatactgtg-gttttacagtaccttttctatgtttagatatgtttacatacacaaatggttaccattgtgttacatttgcctgtagttttcagtatggtaacatactgtatagatttgtagcctcaaagcaataggctataccatacagcctaggtgtatagtaagctacaccgtctcagtttgtgtaagtacattccatgaggttcatagaacaacagaatcatccacaacacatttctcag------tccctattgttaagtgacaaatgact i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1896083 444 - 91010382 tttaaagggaaatttttacattagtagcccaaattagaaaaatca---ttttttcctaaaatagatggtaactataaaaatgaataggatgaaaaaacagatgaagtacagtcatgcattgcataatgacatt-tggtcggtgatgaaatgcatacacaatagtggttccagaagattataataccgtg-gttttacagtaccttttctatgtttaggtatgtttacatacacaaatggttaccattgtgttacatttgcctatagttttcagtatggtaacatactgtatagctttgtagcctcaaagcaataggctacaccatacagcctaggtgtatagtaagctataccgtctccgtttgtgtaagtacgttccatgaggttcatagaacaacagaatcacccacaacacatttcgcag------tccttattgttaagtgaccaatggct i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2007120 444 + 5179401 tttaaagggaaatttttacattagtagcccaaattagaaaaatca---ttttttcctaaaatagatggtaactataaaaatgaataggatgaaaaaacagatgaagtatagttatgcattgcataatgacatt-tggtcggtgatgaaatgcatacacaatagtggttccagaagattataatactgtg-gttttacagtaccttttctatgttttgatatgtttacatacacaaatggttaccattgtgttacatttgcctatagttttcagtatggtaacatactgtatagatttgtagcctcaaagcaataggctataccatacagcctaggtgtatagtaagctataccgtctcagtttgtgtaagtacattccatgaggttcatagaacaacagaatcatccacaacacatttctcag------tccctattgttaagtgacaaatgact i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7713173 450 - 21726897 tttaaagggacatttttacattagtagcccaaatcagaaaaatca---ttttttcctaaaatagatggtaactataaaaatgaataggatgaaaaaacagttgaagtatagtcatgcattgcataatgacatt-tggtcggtgatgaaatgcatacgcaatagtggttccagaagattataatactgtg-gttttacagtaccttttctatgtttagatatgtttacatacacaaatggttaccattgtgttacatttgcctatagttttcagtatggtaacatgctgtatagatttgtagcctcaaagcaataggctataccatacagcctaggtgtatagtaagatataccatctcagtttgtgtaagtacattccatgaggttcatagaacaacaaaatcacccacaacacatttctcagaatgtatccttattgttaagtgacaaatgact i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112533735 443 + 204313951 tttaaaaggaaatttttatattactagcccaaactagaaaaattg---ttttttcctaaaatagatgttaactataaaagtaaataggatgaaaaaccagatgaagtacagtcatgcattgcataataacattttggtgagtgatggaatgcatatgcaatagtgattccagaagat-----tactgta-tttttacagtacctttgctatgtttagatatgtttagatatgcaaatgcttactattatgttgcattggcctatagtattctttatggtaacgtactgtataggtttgcagcctcagagcaataggctataccatacagcctaggtgtatagtaggctctaccatcttggtttgtgtaaatacattccatgatgttcatacaacaacaacgtcacccacaatgcatttctcagaatgtatccttattgttaagtgacaaatg--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44979396 448 + 71252344 tttaaaaggaaatttttatattactagcccaaattagaaaaatag---ttttttcctaaaatagatggtgactatgaaagtaaataggatgaaaaACCAGATGAAGTAcagtcatgcattgcataatgacattttggtgagtgatggaatgcatatgcaatagtgattccagaagatgataatacggta-ttattacagtaccttttctatgtttagatatgtttagatatgcaaatgcttactattatgttgcattggcctatagtattctttatggtaacatactgtgtaggtttgtagcctcagagcagtaggctataccatacagcctaggtgtacagtaggctctaccatcttggtttgtgtaaatacattccatgatgttcatacaacaacaaagtcacccacaatgcatttctcagaatgtatccttattgttaagtaacAAATT--- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 343114 430 - 1393929 tttaaaaggaaatttttatattactagcccaaattagaaaaatcg---ttttttcctaaaatagatggtaactataaaagtaaataggatgaaaaACCAGATGAAGTAcaattatgcattgcataatgacattttggtgagtgatggaatgcatatgcaatagtgattccagaagattataatactcta-tttttatagtaccttttc----------tatgtttagatatgcaaatgcttactgt--tgttgcattggcctataatattctttatggtaacatactgtataggtttgtagcctcagagcaataggctataccatacagcctaggtgtatagtaggctctaccatcttggtttctgtaaatacattccatgatgttcat---acaacaaagtcacccacgatgcgtttctcagaatgtatcttta---ttaagtgacaaatg--- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1420352 441 - 15889662 tttaaaaggaaatttttatattactagcccaaattagaaaaatcgtttttttttcctaaaatagatggtagctataaaagtaaataggaagaaaaaccagatgaagtacagtcatgcattgcataatgacattttgttgagtgatggaatgcatatacaatagtgattccagaagattatgataccgtt-tttttacagtaccttttc----------tatgtttagatatgcaaatgcttactattatgttgcattggcctatagtattctttatggtaacatactgtataggtttgcagcctcagagcaatagactataccatagcgcctacatgtatagtaggctctaccatcttggtttgtgtaactacattccatgatgttcatacaacaacaaagtcacccacaatgcatttctcagaatgtatccttattgttaagtgacaaatg--- i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14317893 80 + 91889043 I e micMur3.chr12 84830823 1207 + 108143057 I e proCoq1.NW_012147189v1 601470 468 - 10520994 I e dasNov3.JH570378 1237252 685 - 11655695 I e mm10.chr13 76457849 2688 + 120421639 I e otoGar3.GL873536 1302270 1866 - 29863360 I a score=474668.000000 s hg38.chr5_GL383530v1_alt 35842 53 + 101241 gtatatagttttaactaaataaagttacctgga-gctcagtccctgagaacatg-- s panTro5.chr5 20264592 53 + 181907262 gtatatagttttaactaaataaagttacctgga-gctcagtccctgagaacatg-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20280951 53 + 183735486 gtatatagttttaactaaataaagttacctgga-gctcagtccctgagaacatg-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4767745 53 - 13748885 gtatatagttttaactaaataatgttacctgga-gctcagtccctgagaacatg-- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53804492 53 - 163208435 gtatatagttttaactaaataatgttacctgga-gctcagtccctgagaacatg-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87830882 53 - 180051392 gtatgtagttttagctaaataatgttacctaga-actcagtccctggaaacatg-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87935298 53 - 181584905 gtatgtagttttagctaaataatgttacctaga-actcagtccctggaaacatg-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1158217 53 - 8785636 gtatgtagttttagctaaataatgttacctaga-actcagtccctggaaacatg-- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1626435 53 + 27333823 gtatgtagttttagctaaataatgttacctaga-actcagtccctggaaacatg-- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1896527 53 - 91010382 gtatgtagttttagctaaataatgttaccgaga-gcgcagtccctgagaacatg-- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2007564 53 + 5179401 gtatgtagttttagctaaataatgttacctaga-actcagtccctagaaacatg-- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7713623 53 - 21726897 gtatatagttttagctaaataatgttacctaga-gctcaatccctgagaacatg-- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112534178 41 + 204313951 ------------agctaaagaatgttacctgga-gcttagtccctgagaacatg-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44979844 41 + 71252344 ------------AGTTAAAGAATGTTACCTGGA-GCTTAGTCCCTGAGAACATG-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 343544 41 - 1393929 ------------aACTAAAGAATGTTACCTGGA-GCTTAGTCCCTGAGAGCATG-- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1420793 41 - 15889662 ------------agctaaataatattacctgga-gcttagtccttgagaacgtg-- i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14317973 56 + 91889043 gtatatagttctagctagatgatgttacttggaggttcagtgcctgagaacatctt i canFam3.chr3 I 80 C 0 e micMur3.chr12 84830823 1207 + 108143057 I e proCoq1.NW_012147189v1 601470 468 - 10520994 I e dasNov3.JH570378 1237252 685 - 11655695 I e mm10.chr13 76457849 2688 + 120421639 I e otoGar3.GL873536 1302270 1866 - 29863360 I a score=13923.000000 s hg38.chr5_GL383530v1_alt 35895 1 + 101241 t s panTro5.chr5 20264645 1 + 181907262 t i panTro5.chr5 C 0 C 0 s panPan2.chr5 20281004 1 + 183735486 t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4767798 1 - 13748885 t i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53804545 1 - 163208435 t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87830935 1 - 180051392 t i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87935351 1 - 181584905 t i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1158270 1 - 8785636 t i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1626488 1 + 27333823 t i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1896580 1 - 91010382 t i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2007617 1 + 5179401 t i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7713676 1 - 21726897 t i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112534219 1 + 204313951 t i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44979885 1 + 71252344 T i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 343585 1 - 1393929 T i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1420834 1 - 15889662 t i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 601938 1 - 10520994 T i proCoq1.NW_012147189v1 I 468 C 0 s canFam3.chr3 14318029 1 + 91889043 t i canFam3.chr3 C 0 C 0 e micMur3.chr12 84830823 1207 + 108143057 I e dasNov3.JH570378 1237252 685 - 11655695 I e mm10.chr13 76457849 2688 + 120421639 I e otoGar3.GL873536 1302270 1866 - 29863360 I a score=4332773.000000 s hg38.chr5_GL383530v1_alt 35896 373 + 101241 ctcctgtttaaacaagaa--tagaaagatgttaaaggcctactagtact-aaactgaaatttttctccttgatactaggaaattaaaaggggaaacactttgtctctacctgatttagagtgtttaatgtaccattaccacctaaaatgatgtcccagattactagttgaagcattccatacattgggaaat-actAGATTAAAGAAA-CAAAGAGAAAGGATCAAATAGCCTCACTCACTCTCCCATTCATTCATTT-----CTcttgttatgggcct-gaaactgggtatgtagtgttgaacaacaa-----------------------------aaaccaaattcctgcccccattgacttaaccattGAACACGGATCTTTTCTTCCTTGTAACCTATTCTATCATGC s panTro5.chr5 20264646 373 + 181907262 ctcctgtttaaacaagaa--tagaaagatgttaaaggcctactagtacc-aaactgaaatttttctccttgatactagaaaattaaaaggggaaacactttgtctctacctgatttagagtgtttaatgtaccattaccacctaaaatgatgtcccagattactagttgaagcattccatacattgggaaat-actAGATTAAAGAAA-CAAAGAGAAAGGATCAAATAGCCTCACTCACTCTCCCATTCATTCATTT-----CTcttgttatgggcct-gaaactgggtatgtagtgttgaacaacaa-----------------------------aaaccaaattcctgcccccattgacttaaccattGAACACGGATCTTTTCTTCCTTGTAACCTATTCTATCATGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20281005 373 + 183735486 ctcctgtttaaacaagaa--tagaaagatgttaaaggcctactagtacc-aaactgaaatttttctccttgatactagaaaattaaaaggggaaacactttgtctctacctgatttagagtgtttaatgtaccattaccacctaaaatgatgtcccagattactagttgaagcattccatacattgggaaat-actAGATTAAAGAAA-CAAAGAGAAAGGATCAAATAGCCTCACTCACTCTCCCATTCATTCATTT-----CTCTTGTTATGGGCCT-GAAACTGGGTATGTAGTGTTGAACAACAG-----------------------------AAACCAAATTTCTGTCCCCATTGACTTAACCATTGAACACGGATCTTTTCTTCCTTGTAACCTATTCTATCATGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4767799 373 - 13748885 ctcctgtttaaacaagaa--tagaaagatgttaaaggcctactagtacc-aaactgaaatttttctccttgatactagaaaattaaaaggggaaaaactttgtctctacccgatttagagtgtttaatgtaccattaccacctaaaatgatgtcccagattactagttgaagcattccatacattgggaaat-actAGATTAAAGAAA-CAAAGAGAAAGGATCAGATAGCCTCACTCACTCTCCCATTCATTCATTT-----CTcttgttatgggcct-gaaactgggtatgtagtgttgaacaacaa-----------------------------aaaccaaattcctgcccccatggacttaaccattGAACACGGATCTTTTCTTCCTTGTAACCTATTCTATCATGC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53804546 372 - 163208435 ctcctgtttaaacaagaa--tagaaagatgttaaaggcctaccagtacc-aaactgaaatttttctctttgatgttagaaaattaaaaggggaaa-actttgtctctacctgatttagagtgtttaatgtaccattaccacctaaaatgatgtcccagattaccagttgaagcatcccgcacattgggaaat-actAGATTAAAGAAA-CAAAGAGAAAGGATCAAATAGCCTCACTCACTCTCCGATTAATTCATTT-----CTcttgttatgggcct-gaaactgggtatgtagtgttgaacaacaa-----------------------------aaaccaaattcctgcccccatggacttaaccattGAACACGGATCTTTTCTTTCTTGTAACCTATTCTATCATGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87830936 373 - 180051392 ctcctgtttaaacaagaa--tagaaagatgttaaaggcctactagtacc-agactgaaacttttctccttgatattagaaaattaaaaggggaaaaactttgtctctacctgattaagagtttttaatgtaccattaccacctaaaatgatgtcccacattaccagctgaagcattctgcacattgggaaat-actAGATTAAAGAAA-CAAAGAAAAAGGATCAAATAGCCTCAGTCACTCTCCCATTCATTCATTT-----CTCTTGTTATGGGCct-gaacctgggtatgtagtattgaacaacaa-----------------------------aaaccaagttcctgcccccgcggacttaaccattGAACACGGATCTTTTCTTCCTTGTAACCTATTCTATCATGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87935352 373 - 181584905 ctcctgtttaaacaagaa--tagaaagatgttaaaggcctactagtacc-agactgaaacttttctccttgatattagaaaattaaaaggggaaaaactttgtctctacctgattaagagtttttaatgtaccattaccacctaaaatgatgtcccacattaccagctgaagcattctgcacattgggaaat-actAGATTAAAGAAA-CAAAGAAAAAGGATCAAATAGCCTCAGTCACTCTCCCATTCATTCATTT-----CTCTTGTTATGGGCct-gaacctgggtatgtagtgttgaacaacaa-----------------------------aaaccaagttcctgcccccgcggacttaaccattGAACACGGATCTTTTCTTCCTTGTAACCTATTCTATCATGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1158271 373 - 8785636 gtcctgtttaaacaagaa--tagaaagatgttaaaggcctactagtacc-agactgaaacttttctccttgatattagaaaattaaaaggggaaaaactttgtctctacctgattaagagtttttaatgtaccattaccacctaaaatgatgtcccacattaccagctgaagcattctgcacattgggaaat-actAGATTAAAGAAA-CAAAGAAAAAGGATCAAATAGCCTCAGTCACTCTCCCATTCATTCATTT-----CTCTTGTTATGGGCct-gaacctgggtatgtagtgttgaacaacaa-----------------------------aaaccaaattcctgcccccgcggacttaaccattGAACACGGATCTTTTCTTCCTTGTAACCTATTCTATCATGC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1626489 373 + 27333823 ctcctgtttaaacaagaa--aagaaagatgttaaaggcctactagtacc-aaactgaaaattttctccttgatattagaaaattaaaaggggaaaaactttgtctctacctgattaagagtttttaatgtaccattaccacctaaaatgatgtcccacattaccagctgaagcattctgcacattgggaaat-actAGATTAAAGAAA-CAAAGAAAAAGGATCAAATAGCCTCAGTCACTCTCCCATTCATTCATTT-----CTCTTGTTATGGGCct-gaacctgggtatgtagtgttgaacaacaa-----------------------------aaaccaaattcctgcccccgcggacttaaccattGAACACGGATCTTTTCTTCCTTGTAACCTATTCTATCATGC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1896581 373 - 91010382 ctcctgtttaaacaagaa--tagaaagatgttgaaggcctactagtacc-aaactgaaacttttctccttgatattagaaaattaaaaggggaaaaactttgtctctacctgatttagagtttttaatgtaccattaccacctaaaatgatgtcccacattaccagctgaagcattctgcacattgggaaat-actAGATTAAAGAAA-CAAAGAAAAAGGATCGAATAGCCTCAGTCACTCTCCCATTCATTCATTT-----CTCTTGTTATGGGCct-gaacctgggtatgtagtgttgaacaacaa-----------------------------aaacctaattcctgcccccgcggaCTTAACCATTGAACACAGATCTTTTCTTCCTTGTAACCTATTCTATCATGC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2007618 373 + 5179401 ctcctgtttaaacaagaa--tagaaagatgttaaaggcctactagtacc-aaactgaaacttttctccttgatattagaaaattaaaaggggaaaaactttgtctctacctgattaagagtttttaatgtaccattaccacctaaaatgatgtcccacattaccggctgaagcattctgcacattgggaaat-actAGATTAAAGAAA-CAAAGAAAAAGGATCAAATAGCCTCAGTCACTCTCCCATTCATTCATTT-----CTCTTGCTATGGGCct-gaacctgggtatgtagtgttgaacaacaa-----------------------------aaaccaaattcctgcccctgcggaCTTAACCATTGAACACGGATCTTTTCTTCCTTGTAACCTATTCTATCATGC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7713677 373 - 21726897 ctcccgtttaaacaagaa--tagaaagatgttaaaggcctactagtacc-aaactgaaacttttctccttgatattagaaaattaaaaggggaaaaactttgtctctacctgatttagagtatttaatataccattaccacctaaaatgatgtcccacattaccaactgaagcattctgcacgttgggaaat-actAGATTAAAGAAA-CAAAGAAAAAGGATCAAATAGCCTCAGTCACTCTCCCATTCATTCATTT-----CTCTTGTTATGGGCCT-GAACCTGGGTATGTAGTGTTAAACAACAA-----------------------------AAACCAAATTCCTGCGCCCTTGGACTTAACCATTGAACACGGATCTTTTCTTCCTTGTAACCTGTTATATCATGC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112534220 382 + 204313951 ctcctgtttaaacaagaa--tggaaagatgttaaaggcctactagtacc-aaaatgaaatttttcttcttgatgctagacaatcaaaaagggaaaatctttgtctctacctgatttagagtgtttaatgtactgttaccacctaaaatgatgtcccagattaccaggtgaagcattccacatattgggaaat-attAGATGAATGAAA-CAAAGAAAAAGGACCAAATAGCCTCACTCACTCTTCCGTTTATTTATTT-----CACTTTTTATGGACCT-GAAACTGGGTATGTAGTGTTGAACAACAACAACAAAAA--------------------TAGCCATATTCCTACACCCGTGGACTTAACCATTGAACACAGATCTTTTCTTCCTTGTAACCTATTCTATTACAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44979886 403 + 71252344 CTCCTGTTTAAACAAGAA--tggaaagatgttaaaggcctactaatacc-aaaatgaaattttccttcttgatactagacactcaaaaagtgaaaagctttgtctctacctgatttagagtgtttaatgtaccattaccacctaaaatgatgtaccagattaccaggtgaagcattccacacattaggaaataATTAGATGAACAAAA-CAAAGAAAAAGGACCAAACAGCCTCACTCACTTTTCTGTTTATTTATTT-----CTCTTTTTGTGGGCCT-GAAACTGGGTATGTAGCATTGAAaaaataaaacaaaaaaaaaaaacaaaacaaaacagaaaacaaaTTCCTACGCCCATAGACTTAACCACTGAATGCAGATCTTTTCTTCCTTGTAACCTATTCTATTACAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 343586 394 - 1393929 CTCCTGTTTAAACAAGAA--tggaaagatgttaaaggcctactaatacc-aaaatgaaatttttcttcttgatactagacaatcaaaaagggaaaagctttgtctctacctgatttagagtgtttaatgtaccgtTACC-CCTAAAATGATGTACCAGATTACCAGGTGAAGCATTCCACACATTGGAAAAT-ATTAGATGAACAAAA-CAAAGAAAAAGGACCAAATAGCCTCACTCACTCTTCCATTTATTTATTT-----CTCTTTTTATAGGCCT-GAAACTGCGTATGTAGTGTTGTACAAaaacaaacaaacaaacaaacaataa-------aaaacaaaTTCCTACGCCCATGGACTTAACCATTGAACACAGATCTTTTCTTCCTTGTAACGTATTCTATTACAC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1420835 389 - 15889662 ctcctgtttaaacaagaa--tggaaagatgttaaaggcctactagtacc-aaaatgaaatttctcttcttcatactagacaatcaaaaagggacaagctttgtctctacctgatttagagtgtttaatgtactgttaccacctaaaatgatgtaccagattaccaggtgaagcattccacacgttgggaaat-aGTAGATGAACGAAA-CAAAGAAAAAGGACCAAATAGCCTCACTCACTTTTCCGTTTATTTATTT-----CTCTTGTTATGGGCCT-GAAACTGGGTATGTAGTGTTGAACAACAACAACAAAAA------ACAACAA-------AAACCAAATTCCTATGCCCATGCACTTAACCATTGAACACAGATCTTTTCTTCCTTGTAACCTATTCTATTGCAC i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 601939 362 - 10520994 CTCCTATTTAAACAAGAA--tggagagatgtaaaagacctacttgtacc-aaactgaaa-ttttctacttgatattagaaaatcgaaaagggaaaatctttgtcactacccgatttagagtttttaatgtactgtactaacctacaatgatgtcccagactccctgatgaagcatcccacactttgggaaTT-ATTAAA-GAACCAAA-TAAAGAAAAAGGATCAAAAAGCCTTACTTACTC----atttattaattc-----ctcttattatgtgccc-taaactgggtatgtggtgttgaacaa-aa-----------------------------cacatacatccctgcccccacggacttaACTACTGAGCACACATTTTCCCTTTC----AACCTGCTCCATCGTGC i proCoq1.NW_012147189v1 C 0 C 0 s canFam3.chr3 14318030 335 + 91889043 cttctgttaagacaagaa--tggagagatgttaaaagcctgctagcaccaaaactgaggtttttctccttgaTCTT------------------AAACTTTGTTAATCTTCAAGTCAGAGTTTTTAATATACTGTTACCACCTAAAATGATAGCCTAGA-----------------CCATGGTTTAGGAAAT-AGAGGATTAAAAAAATCAAAGAACATGGATCTAAAAGCCCAATCAAGTCAGTAATTCATTTATTC----ATTCAACTTATGTGCCTCCAAACTGAGTATGCTATTTTGACCAA-AG-----------------------------CACACAAATCCTTGCCTACATGGATTT--CCATGGAGTATAGAACT----TTCCTTTTAACCCCTTTTGTCATGC i canFam3.chr3 C 0 I 8 s dasNov3.JH570378 1237937 356 - 11655695 CTCCTTTTTAAATGGATATTTTGAGAAACGTTGAAGACCCACTAACACC-AAATTGAGATTTTTCTCTTTGATATTAG-------------GAAAACCTTTCTCTCTAC----TTAAGGTTTTTAAATATATCATTACCATC-AAAACGATGCCCCTGCCCACTTGTGGAGACATCCCATAC-CTGGGGAAT-ACTGGATGAAGGAAA-CAAAGAAAAAGTCTCAAATAGCCCAGttcactcactcattcattcattcatccattcaACTTATGTGTTA-AAACctgtgtattcagtattgagcaaaac-----------------------------acataaaatacctccccctgtggacttaGA-GTTGAGCACAGATCTTACCTTTCC----ACCTGTTCTGTCATAC i dasNov3.JH570378 I 685 C 0 e micMur3.chr12 84830823 1207 + 108143057 I e mm10.chr13 76457849 2688 + 120421639 I e otoGar3.GL873536 1302270 1866 - 29863360 I a score=189212.000000 s hg38.chr5_GL383530v1_alt 36269 22 + 101241 ATCTACTCT-T-GCTCTGTCAAAT- s panTro5.chr5 20265019 22 + 181907262 ATCTACTCT-T-GCTCTGTCAAAT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20281378 22 + 183735486 ATCTACTCT-T-GCTCTGTCAAAT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4768172 22 - 13748885 ATCTACTCT-T-GCTCTGTCAAAT- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53804918 22 - 163208435 ATCTACTCT-T-ACTCTGTCGAAT- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87831309 18 - 180051392 ATCTACT------CTCTGTCAAAT- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87935725 22 - 181584905 ATCTACTCT-T-ACTCTGTCAAAT- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1158644 22 - 8785636 ACCTACTCT-T-ACTCTGTCAAAT- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1626862 22 + 27333823 ATCTACTCT-T-ACTCTGTCAAAT- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1896954 22 - 91010382 ATCTACCCT-T-ACTCTGTCGAAT- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2007991 22 + 5179401 ATCTACTCT-T-ACTCTGTCAAAT- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7714050 22 - 21726897 ATCTACTCT-T-ACTCTGTCGAAT- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112534602 22 + 204313951 ATCTATTCT-T-ACTCCATCTAAT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44980289 22 + 71252344 ATCTGTTCT-T-ACTCCATCTAAT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 343980 18 - 1393929 ATCTACTCT-T-----CATCTAAT- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1421224 23 - 15889662 ATCTATTCT-TAACTCCATCTAAT- i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 602301 22 - 10520994 ATCCAGTCT-T-ACTCCCTCTAAC- i proCoq1.NW_012147189v1 C 0 C 0 s mm10.chr13 76460537 22 + 120421639 ATTTACTTT-T-ACCTTCTCAAGA- i mm10.chr13 I 2688 C 0 s canFam3.chr3 14318373 23 + 91889043 ATCCACTCCAC-CCCCTGCCCACC- i canFam3.chr3 I 8 I 14 s dasNov3.JH570378 1238293 23 - 11655695 ACCCAATTC-T-GCTCCCTCTAGCT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84830823 1207 + 108143057 I e otoGar3.GL873536 1302270 1866 - 29863360 I a score=12816436.000000 s hg38.chr5_GL383530v1_alt 36291 944 + 101241 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCCAATATAGTGTAA-CTCA-TTTGGAGGACTAGAAATTCCTTGAAGTTCTTGTTCTCCTCTGACATCAGACCAGTCCCTATGTGTAAGG---CCAAGCCTTGGAATGTGCCTGGAAGGCTCTGTCTCTGGTTCACAGGCTAGA---TCTCCAAGCCTCTAGCAAAT------TTGGACAATACGTCATATCTCTCATGTCTTTCCTGAAATTCCTGCATGATCAGAGAAGTTGGGGAGGCAGGGGGGTATATCTAATAATAAGA--GGTCCAGGATCATGATTATTCTTTCT-TTTGTGCTACT---ATTTAGTGACAAGTT-A---GGTTTTAATCCA----AAAGTGTGCTCTGGGGC-CTCAAGTACAAAATCAGGCTGCCTCAATTGTCTTAACATTGCCTGGTAGAATCCCTTAAATGAGGGGTGGTTAATGCAAAATATATGTATTTTATTAATATATTATTTGGTATATTAGTAAGTGCTTTTTTAGGTTTCCATATAAA-ATCTTTCCTCCAATGTTATTACCAAGCCTCAGAACTTCTTCAGAGTTAATGCCTGTGAACTCCTCATTTAATGCCCCATTGTTCTCACAGAAATTAATTACAGCGAAT----------GTTGTCTGACTTCATGGGAGTTTAATGACAGAGATTATGACCTCACATTCCCTTTG-CAGAAGGAAAGCAGGTGTGGCCAAGACCGGCTTTACTA-AAAG------CCTCCC--ACTACATCTTTATTCGAAG-AAATAT----------AGTTATCTATAGTTAGAACTTGGAACTTCCAAAT-----TGTATTTGTTGTTCTGACTGAACTTTTGTCAAATTATAT-AAGTGCTTCGATAAGGAGTTGTATCTCTCCCATTACCCTTCTAAATTTAGAAATGATAATTTTTGACATCCTCTAGGGGAAG-AAAATTCTTGAAAGCTCTGAT-AAAAGCAAATTTGTTAACAA s panTro5.chr5 20265041 944 + 181907262 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCCAATATAGTGTAA-CTCA-TTTGGAGGACTAGAAATTCCTTGAAGTTCTTGTTCTCCTCTGACATCAGACCAGTCCCTATGTGTAAGG---CCAAGCCTTGGAATGTGCCTGGAAGGCTCTGACTCTGGTTCACAGGCTAGA---TCTCCAAGCCTCTAGCAAAT------TTGGACAATACGTCATATCTCTCATGTCTTTCCTGAAATTACTGCATGAACAGAGAAGTTGGGGAGGCAGGGGGGTATATCTAATAATAAGA--GGTCCAGGATCATGATTATTCTTTCC-TTTGTGCTACT---ATTTAGTGACAAGTT-A---GGTTTTAATCCA----AAAGTGTGCTCTGGGGC-CTCAAGTACAAAATCAGGCTGCCTCAATTGTCTTAACATTGCCTGGTAGAATCCCTTAAATGAGGGGTGGTTAATGCAAAATATATGTATTTTATTAATATATTATTTGGTATATTAGTAAGTGCTTTTTTAGGTTTCCATATAAA-ATCTTTCCTCCAATGTTATTACCAAGCCTCAGAACTTCTTCAGATTTAATGCCTGTGAACTCCTCATTTAATGCCCCATTGTTCTCACAGAAATTAATTACAGCGAAT----------GTTGTCTGACTTCATGGGAGTTTAATGACAGAGATTATGACCTCACATTCCCTTTG-CAGAAGGAAAGCAGGTGTGGCCAAGACCGGCTTTACTA-AAAG------CCTCCC--ACTACATCTTTATTTGAAC-AAATAT----------AGTTATCTATAGTTAGAACTTGGAACTTCCAAAT-----TTTATTTGTTGTTCTGACTGAACTTTTGTCAAATTATAT-AAGTCCTTCGATAAGGAGTTGTATCTCTCCCATTACCCTTCTAAATTTAGAAATGATAATTTTTGACATCCTCTAGGGGAAG-AAAATTCTTGAAAGCTCTGAT-AAAAGCAAATTTGTTAACAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20281400 941 + 183735486 TCTTTTCATC-ATAGCTCTTATCTCATTGCTGTCCCAATATAGTGTAA-CTCA-TTTGGAGGACTAGAAATTCCTTGAAGTTCTTGTTCTCCTCTGACATCAGACCAGTCCCTATGTGTAAGG---CCAAGCCTTGGAATGTGCCTGGAAGGCTCTGTCTCTGGTTCACAGGCTAGA---TCTCCAAGCCTCTAGCAAAT------TTGGACAATACGTCATATCTCTCATGTCTTTCCTGAAATTCCTGCATGATCAGAGAAGTTGGGGAGGCAGGGGGGTATATCTAATAATAAGA--GGTCCAGGATCATGATTATTCTTTCC-TTTGTG---CT---ATTTAGTGACAAGTT-A---GGTTTTAATCCA----AAAGTGTGCTCTGGGGC-CTCAAGTACAAAATCAGGCTGCCTCAATTGTCTTAACATTGCCTGGTAGAATCCCTTAAATGAGGGGTGGTTAATGCAAAATATATGTATTTTATTAATATATTATTTGGTATATTAGTAAGTGCTTTTTTAGGTTTCCATATAAA-ATCTTTCCTCCAATGTTATTACCAAGCCTCAGAACTTCTTCAGAGTTAATGCCTGTGAACTCCTCATTTAATGCCCCATTGTTCTCACAGAAATTAATTACAGCGAAT----------GTTGTCTGACTTCATGGGAGTTTAATGACAGAGATTATGACCTCACATTCCCTTTG-CAGAAGGAAAGCAGGTGTGGCCAAGACCGGCTTTACTA-AAAG------CCTCCC--ACTACATCTTTATTCGAAG-AAATAT----------AGTTATCTATAGTTGGAACTTGGAACTTCCAAAT-----TGTATTTGTTGTTCTGACTGAACTTTTGTCAAATTATAT-AAGTGCTTCGATAAGGAGTTGTATCTCTCCCATTGCCCTTCTAAATTTAGAAATGATAATTTTTGACATCCTCTAGGGGAAG-AAAATTCTTGAAAGCTCTGAT-AAAAGCAAATTTGTTAACAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4768194 938 - 13748885 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCCAATATAGTGTAA-CTCA-TTTGGAGGACTAGAAATTCCTTGAAGTTCTTGTTCTCCTCTGACATCAGACCAGTCCCTGTGTGTAAGG---CCAAGCCTTGGAATGTGCCTGGAAGGCTCTGTCTCTGGTTCACAGGCTAGA---TCTCCAAGCCTCTAGCAAAT------TTGGACAATACATCATATTTCTCATGTCTTTCCTGAAATTCCTGCATGATCAGAGAAGTTGGGGAGGCAGGGGGGTATGTCTAATAATAAGA--GGTCCGGGATCATGATTATTCTTTCA-TTTGTGCTACT---ATTTAGTGACAAGTT-A---GG------CCCC----AGGTTGTGCTCTGGGGC-CTCAAGTACACAATCAGGCTGCCTCAATTGTCTTAACATTGCCTGGTAGAATCCCTTAAATGAGGGGTGGTTAATGCAAAATATATGTATTTTATTAATATATTATTTGGTATATTAGTAAGTGCTTTTTTAGGTTTCCATATAAA-ATCTTTCCTCCAATGTTATTACCAAGCCTCAGAACTTCTTCAGAGTTAATGCCTGTGAACTCCTCATTTAATGCCCCATTGTTCCCACAGAAATTAATTACAGCGAAT----------GTTGTCTGACTTCATGGGAGTTTAATGACAGAGATTATGACCTCACATTCCCTTTG-CAGAAGGAAAGCAGGTGTGGCCAAGACCGGCTTTACTA-AAAG------CCTCCC--ACTACATCTTTATTCGAAG-AAATAT----------AGTTATCTATAGTTAGAACTTGGAACTTCCAAAT-----TGTATTTGTTGTTCTGACTGAACTTTTGTCAAATTATGT-AAGTGCTTCGATAAGGAGTTGTATCTCTCCCATTACCCTTCTAAATTTAGAAATGATAATTTTTGACATCCTCTAGGGGAAG-AAAATTCTTGAAAGCTCTGAT-AAAAGCAAGTTTGTTAACAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53804940 942 - 163208435 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCCAATATAGTGTAA-CTCA-TTTGGGGGACTAGAAATTCCTTGGGGTTCTTGTTCTCCTCTGACATCAGACCAGTCCCTTTGTGTAAGG---CCAAGCCTTGGAATGTGCCTGGAAGGCTCTGTTTCTGGTTCACAGGCTAGA---TCTCCAAGCCTCTAGCAAAT------TTGGACAATACGTCATATTTCTTATGTCTTTCCTGAAATTCCTGCATGATCAGAGAAGTTGGGGAGGCAGGGGGGTATATCTAATAATAAAA--AGTCCAGGATTATGATTATTCTTTCC-TTTGTGCTTCT---ATTTAGTGGCAAGTT-A---GGTTTCAATCCG----AAAATGTGCTCTGGGGC-CTCAAGTAGAAAATCAGGCTGCATCAATTGTCTTAACATTGCCTGGTAGAATCCCTTAAATGAGGGGTGGTTAATGAAAAATATATTTATTTTATTA--ATATTATTTGGTATATTAGTAAGTGCTTTTTTAGGTTTCCATATAAA-ATCTTTCCTCCAATGTTATTACCAAGCCTCAGAACTTCTTCAGAGTTAATGCCTGTGAACTGCTCATTTAATGCCCCATTGTTCCCACAGAAATTAATCACAGCGAAT----------GTTGTCTGACTTCATGGGAGTTTAATGACAGAGATTATGACCTCACATTCCATTTG-CAGAAGGAAAGCAGGTGTGGCCAAGACCGGCTTTACTA-AAAG------CCTCCC--ACTACGTCTTTATTCGAAG-AAATAT----------AGTTATCTGTAGTTAGAACTTGGAACTTCCAAAT-----TGTATTTGTTGTTCTGACTGAACTTTTGTCAAATTATAT-AAGTGCTTTAATAGGGAGTTGTATCTCTCCCATTACCCTTCTAAATTTAGAAATGATAAATTTTGACATCCTGTAGGGGAAG-AAAATTCTTGAAAGCTCTGAT-AAAAGCAAATTTGTTAACAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87831327 939 - 180051392 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCCAATATAGTGTAA-CTCA-TTTGGGGGACTACAAATTCCTTGGGGCTCTTGTTCTCCTCTGACATCAGACCAGTCCCTTTGTGTAAGG---CCAAGCCTTGGAATGGGCCCGGAAGGCTCTGTCTCTGGTTCACAGGCTAAA---TCTCCAAGCCTCTAGCAAAT------CTGGACAATA---CATGTTTCTTATGCCTTTCCTGAAATTCCTGCATGATCAGAGAAGTTGGGGAGGCAGTGGGGCATATCTAATAATAAGA--GGTCCAGGATCATGATTATTCTTTCC-TTTGTGCTACT---ATTTAGTGGCAAGTTAA---GGTTTTAATCCA----AAAATATGCTCTGGGGC-CTCAAGTGCACAGTCAGGCTTCATCAATTGTCTTAACATTGCCTGGTAGAATCCCTTAAATGAGGGGTGGTTAATGCAAAAGATATTTATTTTATTA--ATATTATTTGGTATATTAGTAAGTGC-TTTTTAGGTTTCCATATAAA-ATCTTGCCTCCAATGTTATTACCAAGCCTCAGAACTTCTTCAGAGTTAATGCCTGTGAACTCCTCATTTAATGCCCCATTATTCCCACAGAAATTAATCACAGCGAGT----------GTTGTCTGACTTCATGGGAGTTTAATGACAGAGATTATGACCTCACATTCCATTTG-CAGAAGGAAAGCAGGTGTGGCCAAGACCGGCTTTACTA-AAAG------CCTCCC--GCCACATCTTTATTCAAAG-AAATGT----------AGTTTTCTGTAGTTAGAACAGGGAACTCCTAAAT-----TGTATTTGTTGTTCTGACTGAACTTTTGTCAAATTATGT-AAGTGCTTCGATAAGGAATTGTATCTCTCCCATTACCCTTCTAAATTTAGAAATGATAAATTTCGACATCCTCTTGGGGAAG-AAAACTCTTGAAATCTCTGAT-AAAAGCAAATCCGTTAACAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87935747 939 - 181584905 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCCAATATAGTGTAA-CTCA-TTTGGGGGACTACAAATTCCTTGGGGCTCTTGTTCTCCTCTGACATCAGACCAGTCCCTTTGTGTAAGG---CCAAGCCTTGGAATGGGCCCGGAAGGCTCTGTCTCTGGTTCACAGGCTAAA---TCTCCAAGCCTCTAGCAAAT------CTGGACAATA---CATGTTTCTTATGCCTTTCCTGAAATTCCTGCATGATCAGAGAAGTTGGGGAGGCAGTGGGGCATATCTAATAATAAGA--GGTCCAGGATCATGATTATTCTTTCC-TTTGTGCTACT---ATTTAGTGGCAAGTTAA---GGTTTTAATCCA----AAAATATGCTCTGGGGC-CTCAAGTGCACAGTCAGGCTTCATCAATTGTCTTAACATTGCCTGGTAGAATCCCTTAAATGAGGGGTGGTTAATGCAAAAGATATTTATTTTATTA--ATATTATTTGGTATATTAGTAAGTGC-TTTTTAGGTTTCCATATAAA-ATCTTGCCTCCAATGTTATTACCAAGCCTCAGAACTTCTTCAGAGTTAATGCCTGTGAACTCCTCATTTAATGCCCCATTATTCCCACAGAAATTAATCACAGCGAGT----------GTTGTCTGACTTCATGGGAGTTTAATGACAGAGATTATGACCTCACATTCCATTTG-CAGAAGGAAAGCAGGTGTGGCCAAGACCGGCTTTACTA-AAAG------CCTCCC--GCCACATCTTTATTCAAAG-AAATGT----------AGTTTTCTGTAGTTAGAACAGGGAACTCCTAAAT-----TGTATTTGTTGTTCTGACTGAACTTTTGTCAAATTATGT-AAGTGCTTCGATAAGGAATTGTATCTCTCCCATTACCCTTCTAAATTTAGAAATGATAAATTTCGACATCCTCTTGGGGAAG-AAAACTCTTGAAATCTCTGAT-AAAAGCAAATCCGTTAACAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1158666 939 - 8785636 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCCAATATAGTGTAA-CTCA-TTTGGGGGACTACAAATTCCTTGGGGCTCTTGTTCTCCTCTGACATCAGACCAGTCCCTTTGTGTAAGG---CCAAGCCTTGGAATGGGCCCGGAAGGCTCTGTCTCTGGTTCACAGGCTAAA---TCTCCAAGCCTCTAGCAAAT------CTGGACAATA---CATGTTTCTTATGCCTTTCCTGAAATTCCTGCATGATCAGAGAAGTTGGGGAGGCAGTGGGGCATATCTAATAATAAGA--GGTCCAGGATCATGATTATTCTTTCC-TTTGTGCTACT---ATTTAGTGGCAAGTTAA---GGTTTTAATCCA----AAAATATGCTCTGGGGC-CTCAAGTGCACAGTCAGGCTTCATCAATTGTCTTAACATTGCCTGGTAGAATCCCTTAAATGAGGGGTGGTTAATGCAAAAGATATTTATTTTATTA--ATATTATTTGGTATATTAGTAAGTGC-TTTTTAGGTTTCCATATAAA-ATCTTGCCTCCAATGTTATTACCAAGCCTCAGAACTTCTTCAGAGTTAATGCCTGTGAACTCCTCATTTAATGCCCCATTATTCCCACAGAAATTAATCACAGCGAGT----------GTTGTCTGACTTCATGGGAGTTTAATGACAGAGATTATGACCTCACATTCCATTTG-CAGAAGGAAAGCAGGTGTGGCCAAGACCGGCTTTACTA-AAAG------CCTCCC--GCCACATCTTTATTCAAAG-AAATGT----------AGTTTTCTGTAGTTAGAACAGGGAACTCCTAAAT-----TGTATTTGTTGTTCTGACTGAACTTTTGTCAAATTATGT-AAGTGCTTCGATAAGGAATTGTATCTCTCCCATTAGCCTTCTAAATTTAGAAATGATAAATTTCGACATCCTCTTGGGGAAG-AAAACTCTTGAAATCTCTGAT-AAAAGCAAATCCGTTAACAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1626884 933 + 27333823 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCCAATATAGTGTAA-CTCA-TTTGGGGGACTACAGATTCCTTGGGGCTCTTGTTCTCCTCTGACATCAGACCAGTCCCTTTGTGTAAGG---CCAAGCCTTGGAATGGGCCCGGAAGGCTCTGTCTCTGGTTCACAGGCTAAA---TCTCCAAGCCTCTAGCAAAT------CTGGACAATA---CATGTTTCTTATGCCTTTCCTGAAATTCCTGCATGATCAGAGAAGTTAGGGAGGCAGTGGGGCATATCTAATAATAAGA--GGTCCAGGATCATGATTATTCTTTCC-TTTGTGCTACT---ATTTAGTGGCAAGTTAA---GGTTTTAATCCA----AAAATATGCTCTGGGGC-CTCAAGTGCACAGTCAGGCTTCATCAATTGTCTTAACATTGCCTGGTAGAATCCCTTAAATGAGGGGTGGTTAATGCAAAAGATATTTATTTTATTA--ATATTATTTGGTATATTAGTAAGTGC-TTTTTAGGTTTCCATATAAA-AGCTTGCCTCCAATGTTATTACCAAGCCTCAGAACTTCTTCAGAGTTAATGCCTGTGAACTCCTCATTTAATGCCCCATTATTCCCACAGAAATTAATCACAGCGAAT----------GTTGTCTGACTTCATGGGAGTTTAATGACAGAGATTATGACCTCACATTCCATTTG-CAGAAGGAAAGCAGGTGTGGCCAAGACCGGCTTTACTA-AAAG------CCTCCC--GCCACATCTTTATTCGAAG-AAATGT----------AGT------TAGTTAGAACAGGGAACTCCTAAAT-----TGTATTTGTTATTCTGACTGAACTTTTGTCAAATTATGT-AAGTGCTTCGATAAGGAATTGTATCTCTCCCATTACCCTTCTAAATTTAGAAATGATAAATTTCGACATCCTCTTGGGGAAG-AAAACTCTTGAAATCTCTGAT-AAAAGCAAATCCGTTAACAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1896976 938 - 91010382 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCCAATATAGTGTAA-CTCA-TTTGGGGGACTACAAATTCCTTGGGGCTCTTGTTCTTCTCTGACATCAGACCAGTCCCTTTGTGTAAGG---CCAAGCCTTGGAAAGGGCCTGGAAGGCTCTGTCTCTGGTTCACAGGCTAAA---TCTCCAAGCCTCTAGCAAAT------CTGGACAATA---CATGTTTCTTATGTCTTTCCTGAAATTCCTGCATGATCAGAGAAGTTGGGGAGGCAGTGGGGCATATCTAATAATAAGA--GGTCCGGGATCATGATTATTCTTTCC-TTTGTGCTACT---ATTTAGTGGCAAGTT-A---GGTTTTGATCCA----AAAATATGCTCTGGGGC-CTCAAGTGCACAGTCAGACTTCATCAATTGGCTTAACATTGCCTGGTAGAATCCCTTAAATGAGGGGTGGTTAATGCAAAAGATATTTATTTTATTA--ATATTATTTGGTATATTAGTAAGCGCTTTTTTAGATTTCCATATAAA-ATCTTGCCTCCAATGTTATTACCAAGCCTCAGAACTTCTTCAGAGTTAATGCCTGTGAACTCCTCATTTAATGCCCCATT-TTCCCACAGAAATTAATCACAGCGAAT----------GTTGTCTGACTTCATGGGAGTTTAATGGCAGAGATTATGACCTCACATTCCATTTG-CCGAAGGAAAGCAGGTGTGGCCAAGACCGGCTTTATTA-AAAG------CCTCCC--ACCACATCTTTATTTGAAG-AAATAT----------AGTTATCTATAGTTAGAACATGGAACTCCTAAAT-----TGTATTTGTTGTTCTGACTGAACTTTGGTCAAATTATGT-AAGTGCTTCGATAAGGAATTGTATCTCTCCCATTACCCTTCTAAATTTAGAAATGATAAATTTCGACATCCTCTAGGGGAAG-AAAACTCTTAAAATCTCTGAT-AAAAGCAAATCCGTTAACAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2008013 944 + 5179401 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCCAATATAGTGTAA-CTCA-TTTGGGGGACTACAAATTCCTTGGGGCTCTTGTTCTCCTCTGACATCAGACCAGTCCCTTTGTGTAAGG---CCAAGCCTTGGAATGGGCCCGGAAGGCTCTGTCTCTGGTTCACAGGCTAAA---TCTCCAAGCCTCTAGCAAAT------CTGGACAATA---CATGTTTCTTATGCCTTTCCTGAAATTCCTGCATGATCAGAGAAGTTAGGGAGGCAGTGGGGCATATCTAATAATAAGA--GGTCCAGGATCATGATTATTCTTTCC-TTTGTGCTACT---ATTTAGTGGCAAGTTAA---GGTTTTAATCCA----AAAATATGCTCTGGGGC-CTCAAGTGCACAGTCAGGCTTCATCAATTGTCTTAACATTGCCTGGTAGAATCCCTTAAATGAGGGGTGGTTAATGCAAAAGATATTTATTTTATTA--ATATTATTTGGTATATTAGTAAGTGC-TTTTTAGGTTTCCATATAAA-ATCTTGCCTCCAATGTTATTACCAAGCCTCAGAACTTCTTCAGAGTTAATGCCTGTGAACTCCTCATTTAATGCCCCATTATTCCCATAGAAATTAATCACAGCGAAT----------GTTGTCTGACTTCATGGGAGTTTAATGACAGAGATTATGACCTCACATTCCATTTG-CAGAAGGAAAGCAGGTGTGGCCAAGACCGGCTTTACTA-AAAG------CCTCCC--GCCACATCTTTATTCGAAG-AAATGT----------AGTTATCTGTAGTTAGAACAGGGAACTCCTAAATAATACTGTATTTGTTATTCTGACTGAACTTTTGTCAAATTATGT-AAGTGCTTCGATAAGGAATTGTATCTCTCCCATTACCCTTCTAAATTTAGAAATGATAAATTTCGACATCCTCTTGGGGAAG-AAAACTCTTGAAATCTCTGAT-AAAAGCAAATCCGTTAACAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7714072 939 - 21726897 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCCAATATAGTGTAA-CTCA-TTTGGGGGACTACAAATTCCTTGGGACTCTTGTTCTCCTCTGACATCAGACCAGTCCCTTTGTGTAAGG---CCAAGCCTTGGAATGTGCCCGGAAGGCTCTGTCTCTGGTTCACAGGCTAAA---TCTCCAAGCCTCTAGCAAAT------TTGGACAATA---CATGTTTCTTATGTCTTTCCTGAAATTCCTGCATGATCAGAGAAGTTGGGGAGGCAGTGGGGCATATCTAATAATCAGA--GGTCCAGGATCATGATTATTCTTTCC-TTTGTGCTACT---ATTTAGTGGCAAGTT-A---GCTTTTAACCCA----AAAATATGCTCTGAGGC-CTCAAGTACACAGTCAGGCTTCATCAGTTGTCTTAACATTGCCTGGTAGAATCCCTTAAATACGGAGTGGTTAATGCAAAAGATATTTATTTTATTA--ATATTATTTGGTATATTAGTAAGTGCTTTTTTAGGTTTCCATATAAA-ATCTTGCCTCCAATGTTATTACCAAGCCTCAGAACTTCTTCAGAGTTAATGCCTGTGAACTCCTCATTTAATGCCCCATTATTCCCACAGAAATTAATCACAGCGAAT----------GTTGTCTGACTTCATGGGAGTTTAATGACAGAGATTATGACCTCACATTCCATTTG-CATAAGGAAAGCAGGTGTGGCCAAGACCGGCTTTACTA-AAAG------CCTCCC--ACCACATCTTTATTCGAAG-AAATAT----------AGTTATCTGTAGTTAGAACACGGAACTCTTAAAT-----TGTATTTGTTGTTCTGACTGAACTTTCGTCAAATTATAT-AAGTGCTTCGATAAGGAATTGTATCTCTCCCATTACCCTTCTAAATTTAGAAACGATGAATTTCGACATCCTCTAGGGGAAG-AAAACTCTTGAAATCTCTGAT-AAAAGCAAATCCGTTAACAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112534624 923 + 204313951 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCCAGTATAGTGT-A-CTCA-TTTGGGGTACTAGAAGTTCCTTGGGGTTCTTGTTCTCTCCT-----------------TTTGTGTAAGG---CCAAGCCTTGGAATGCGCCTGAAAAGCTCTGTCTCTTGTTTACAGGCTAGATCTTCTCCAAGCCTCTAGCAAAT------TTGGACAATATGTCATGTTTCTTATGTCTTTTCTGAAATTCCTGTGTGATCAGAGAAGTTTGGGGGCCAG-GGGACATATCTAATAATAAGA--GGTCCAGGATAATGATTATTCTTTCC-TTTGTGCTACT---GTTTAGTGGCAAGTT-A---GGTTTTAATCC-----AAAACGTGCTCTGGGGC-CTCAAGTACACAACCAGGCTGCATCAATTGTCTTAACATGGCCTGGTGGAATCACTTAAATAAGGGGTGGCTAATGCAAAAGatatttattttatta--atattaGTTGGTATACTAGTAAGTACTTTTTTAGGTTTCCATGTAAA-ATCTTGCCTCCAATGTTGTTACCAAGCCTCAGAACTTCTTCAGAGTTAATGCCTGTGAACTCCTCAGTTAATGCCCCATTATTCCCACAGAAATTAATCACAGCAAAT----------GTTGCCTGACTTCATGGGAATTTAATGAC--AGATTATGGCCTCACATTCCATTCG-CAGAAGAAAAGCAGGTGTGGCCAAGACCAGCTTTACTA-AAAG------CCTCCC--ACCACATCTTTATTCAAAG-AAATAT----------AATTATCTGTAGTTAGAACGTGGAACTTCCAAAT-----TGTATTTGTTTTTCTGACCGAACTTTCATCAAATTATGT-AAGTGCTTTGACAAGGAGTTGTATCTCTTCCATTACCCTTCTAAATTTAGAAATGATACATTTTAACATCCTCCAGGGGAAG-AAAAATCTTGAAAGCTCTGAT-AAAAGCAAATCCGTTAACAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44980311 941 + 71252344 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCAAGTATAATGTAA-CTCA-TCTGGGGTACTAGAAGTTCCTTGGGGTTCTTATTCTCTTCTGACATCAGACCAGTCTCTTTGTGTAAGG---CCAAGCCTTGGAATGCACCTGAAAGGCTCTGTCTCTTGTTCACAGGCTAGATCTTCTCCGAGCCTCTAGCAAAT------TTAGACAATATGCCATGTTTCTTATGTCTTTTCTGAAATTCCTGTGTGATCAGAGAAGTTTGGGGGCCAA-GGGACATATCTAATAATAAGA--GGTCCGGGATCATGATTATTCTTTCC-TTTGTGCTACT---GTTTAGTGGCAAGTC-A---GGTTTTAATCCA----AAAACGTGCTCTGGGGC-CTCAAGTATACAACCAGGCTGCATCAATTGTCTTAACATTGCCTGGTGGAATCACTTAAATAAGGGGTGGCTAATGCAAAAGATATTTATTTTGTTA--ATATTAGTTGGTATACTAGTAAGTACTTTTTTAGGTTTCCATGTAAA-ATCTTGCCTCCAATGTTATTACCAAGCCTCAGAACTTCTTCAGAGTTAATGCCTGTGAACTCGTCAGTTAATGCCCCACTATTCCCACAGAAATTAATCACAGCACAT----------GTTGTCTGACTTCATGGGAATTTAATGAC--AGATTATGGCCTCACATTCCATTCG-CAGAAGAAAAGCAGGTATGGCCAAGACCAGCTTTACT--AAAG------CCTCCC--ACCACGTCTTTATTCAAAG-AAATAT----------AATTATCTGTAGTTAGAACGTGGAACTTCCAAAT-----TGTATTTGTTGTTCTGACTGAACTTTCATCAAATTATGT-AAGTGCTTTGACAAGGAGTTGTATCTCTTCCATTACCCTTCTAAATTTAGAAATGATACATTTTGACATCCTCCAGGGGAAG-AAAAATCTTGAAAGCTCTGAT-AAAAGCAAATCCGTTAACAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 343998 945 - 1393929 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCCAGTATAGTGTAA-CTCA-TTTGGGGTACTAGAATTTCCTTGGGGTTCTTGTTTTCTTCTGACATCAGACCAGTTCCTTTGTGTAAGG---CCAAGCCTTGGAATGCACCTGAAGGGCTCTGTCTCTTGTTCACAGGCTAGATCTTCTCCAAGCCTCTAGCAAAT------TTGGACAATATGTCATGTTTCTTAGGTCTTTCCTGAAATTCCTGTGTGATCAGAGAAGTTTGGGGGCCAG-GGGACGTATCTAATAATAATA--AGTCCAGGATCATGATTATTCTTTCC-TTTGTGCTACT---GTTTAGTGGCAAGTT-A---GGTTTTAATCCA----AAAACGTGCTCTGGAGC-CTCAAATACACAACCAGTCTGCATCAATTGTCTTAACATTGCCTGGGGGAATCACTTAAATAAGGGGTGGCTAATGCAAAAGATATTTATTTTATTA--ATATTAGCTGGTATACTAGTAAGTACTTTTTTAGGTTTCCATGTAAC-ATCTTGCCTCCAATGTTATCACCAAGCCTCAGAACTTCTTCAGAGTGAATGCCTGTGAACTCCTCAGTTAATGCCCCATTATTACCACAGAAATTAGTCACAGCAAAT----------ATTGTCTGACTTCATGGGAATTTAATGACAGAGATTATGGCCTCACATTCCATTTG-CAGAAGAAAAGCAGGTGTGGCCAAGACCAGCTTTACTA-AAAG------CCTCCC--ACCACATCTTTATTCAAAG-AAATAT----------AATTATCTGTAGTTAGAACGTGGAACTTCCAAAT-----TGTATTTGTTGTTCTGACTGAACTTTCATCAAATTATGT-AAGTGCTTTGACAAGGAGTTGTATCTCTTCCATTACCCTTCTAAATTTAGAAATGATACATTTTGACATCCTCTAGGGGAAG-AAAAATCTTGAAAGCTCTGATAAAAAGCAAATCCGTTAACAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1421247 942 - 15889662 TCTTTTCATC-CCAGCTCTTATCTCATTGCTGTCCCAGTATAGTGTAA-CTCA-TTTAGGGTACTAGAAGTTCCTTTGGGTTCTTGTTCTCTTCTGACATCAGACCAGTCCCTTTGTTTAAGG---CCAAGCATTGGAATGCACCTGAAAGGCTCTGTCTCTTGTTCACAGGCTAGATCTTCTCCAAGCCTCTAGCAAAT------TTGGGCAATATGTCATGTTTCTTATGTCTCTCCTGAAATTCCTGTGTGATCAGAGAAGTTGAGGGGCC-G-GGGACATATCTAATAAGAAGA--GGTCCAGGATCATGATTATTCTTTCC-TTTGTGCTACT---GTTTAGTGGCAAGTT-A---GGTTTTAATCCA----AAAACGTGCTCTGGGGC-TTCAAGTACACAACCAGGCTGCATCAATTGTCTTAACATTGCCTGGTGGAATCACTTAAATGAGGGGTGGCTAATGCAAAAGATATTTATTTTATTA--CTATTAGTTGGTATACTAGTAAGTACTTTTTTAGGTTTCTGTGTAAA-ATCTTGCCTCCGGTGTTATTACCAAGCCTCAGAACTTCTTCAGAGTTAATACCTGTGAACTCCTCAGTTAATGCCCCATTATTCCCACAGAAATTAATCACAGCAAAT----------GTTGTCTGGCTGCATGGGAATTTAATCACAGAGATTATGGCCTCATATTCCATTTG-CAGAAGAAAAGCAGGTGTGGCCAAGACCAGTTTTACTA-AAAG------CCTCCC--ACCACATCTTTATTCAAAG-AAATAT----------AATTATCTGTAGTTAGAACTTGGAAC-TCCAAAT-----TGTATTTGTTGTTCTGACTGAACTTTCATCAAATTATGT-AAGTGCTTTGACAAGGAGTTGTATCTCTTCCATTACCCTTCTAAATTTAGAAATGATACATTTTGACATCCTCCAGGGGAAG-AAAAATCTTGAAAGCTCTTAT-AAAAGCAAATCCGTTAACAA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84832030 947 + 108143057 TCTTGTCATC-ACAGCTCCTCTCTCATTGCTACCCCAGTACAGTATAA-CTTA-TACTGGGGACTAGAAACTCCCTAGGGTCTTTGTTCTCTTCTGACATCAGTCTAGTCCCTTTGTCAAAGG---TTTAGCCTTACAATGTGCCTGGAAGGTTCTAACTCTTG-CCGCAGGCTAGGTCTTCTCCAGGCCTCTGGCAAAT------TTGAACAATATATCAAGTTTTTTATGTGCTTCCTGAAATTCCTGCATGATCAGAGAAGTTAGTGAACCAG-GGTGCACATCTTACTTTAGGA--GGTCCAGGGTCCTGGTTATTCTTTCC-TTTGTGTTACT---ATTTAGTAGCATGTT-T---GGTTTTCATTTTTAAAAAAATGTGGTCTAGGGC-CTTGAGTATGCAATCAGACTTCATCAATTGTC----AATTGCCTGGTAAAACCACTTCACTGAGG-GTGGTTAATGCAAAAGATATTTATTGTATTA--GTATCATTTGGTATACCAGTAAGTGCTTTCATAGGTTTCCATGTAAA-ATCTTACCTGCAGTGTTATTACCATTCCCCAGAACTTCTTCAGAGTTAATACCTGTGAACTCCCCAGTTAATGTCCCATTAT--CCATAGAAATTAATCACAGTGTAT----------ATTATCTGA-TTCATGGGTGTTTAATGACAGAGATTATGGCCTCACATTCTGTTAGCCAGAAGGAAGACAGTCGTGGCTAAGACCAGCTTTACTA-AAAG------CCTCCCCTGCCCCATCTTTATTAGAGC-AAATGT------AAAAAGTTGTCTGTAGTTAGAATGTGGAACTCCCAAAT-----TATATTTGTTGTTCACAGTGAATTTTAGTTAAATTATGTAAAGTGCTTTGATAAGAAGTCATACATCTTCCATTACTCTTCTAAATTTAGAAATGATACATTTTGACATCCTCTAGGGGAAG-AAAATTCTTGAAAACTCTGAT-GAAAGCAAACTCATGAACGA i micMur3.chr12 I 1207 C 0 s proCoq1.NW_012147189v1 602323 931 - 10520994 TTTTTTCGTC-ACAGCTCTTCTCTCATTGCTACCCGAGTACAGGATAA-CTTA-TATTGGGGACTAGAAACTCCTTAGGGTCCTTGTTCTCTTCTAACATCAGTCCAGTCTCTTTGTCTAAAG---TTTAGCCTTGGAACATGCTTAGAAGGTTCTATCTCTTGTCCACAGGCTAG--CTTCTCTAGGCTTCTAGCAAAT------TTGAACAATATATCAAGTTTTTTATGTAC---------TTCCTGCACGATCGGAGAAGTTAGTGAGCCAG-GGTGCACATCTTATTTTAGGA--GGTCCAGAGTCCTGATTATTCTTTCC-TTTTTGCTACT---ATTTAGCAGCAAGTT-T---GGTTTTTATTTC----AAAATGTTGTCTGGGGC-CTTGAGTATGTGATCAGACGGTATCAATTGTC----AATTGCCTGGTAGAACCACCTCGCTGAGG-GTGGTTAATGCAAAAGATACTTATTTCATTA--ATATCATTTGGTATACTAGTACGTGCTTTCATAGGTTTCCATGTAAA-ATCTTAACTCCAGTGTTATTACCACTCCTCAGAACTTCTTTAGAGTTAATACCTGTAAACTCCCCAGTTAATGTCCCGTTAT--CCTTAGAAATTAATCACAGTGTGT----------ATTTTCTGA-TTCGTGGGTGTTTAATGACAGAGATTATGGCCTCATATTCCGTTAGCCAGAGGGAAGACAGTTGTAACTAAGACCAGCTTTACTA-AAAG------CCTCCCCCACCACATCTTTATTAGAAC-AAATGT--------GAAGTTATCTGTAGTTAGAATGTGGAACTCCAAAAT-----TGTATTTGTTGTTCTGATTGAATTTTAGTTAAATTATGTAAAGTGTTTTGATAAGGAGTCATACATCTTCCATTACTCTTCTAAATTTAGAAATGATAAATTTTGACATCCTCTAGGGGAAG-AAAATTCTTGAATACTCTGAT-GAAAGCAAACTCATGAACAA i proCoq1.NW_012147189v1 C 0 C 0 s mm10.chr13 76460559 801 + 120421639 TCTTTTCATCTTTTAATTTTCTCTCATTTCTGTCCCAGTTCACGGCAA-CCTAGTGTTAGggactagaaact-cttggggtccct-ctcaattctgacatCAGTTTATTCCCTTTGCCTGATGTTCCCTTGTGTTAAAGAGCTATCATGGGCCTCTGT----------------------CCTCCAGGTCACTG-------------------------------TCTAAGGCCT--------------------------------GGGAGCTAG-AGGTCCCATCTAAT----------GTCCTAAATCCTTATCATTCTGTTC-ATTGTGCTGCTGCCATTGAGTGGCTTGCT-T---GATTTGGATTCT----AGAGTGTGCTATATGGC-CCCAGCCATATACT----------------------TACAGCCTGGTAGAACTACGTCACTGAAT-GTGGTTACTACAGAAGGCATTCATT-CACCA--CTACTGTTTGGTGTACTCAAAAGTACTTTTTAAGGATTCCTTGTAAA-ATACTGTCTATGATATTATTACCAAGCCTCATAACTTCTATAGAGATAATCCCTGTGAACTCTCCAGTTCACAGCTAATTGTTCCT------GTTAATCACAGTAGATTGTGACATGGATTGTCTGAAGATACAGAGATTGAATTAC--AGATCATGGCCTCAAGTCTCACAGT-CA-----------------GCCAGAACCAACTGCCTTG-AAAA------CTTTCT--TCTTTATCTCTTTGTATAGCAAATAT------AAAGAATTATCC-TAGCTGGAACAGAGAACTCCCTGGT-----TGTATTTGTGGTTCTAATTAGACTTTGGTTAAATTATATCAAGATCTATAAT-----------CCTCCTTTGTTACCATTTTAAATTTAGAAATTTTATTTTCT----TCTCCACAGGGAAG-AAAATTC------------AT-AGAAACATGG-CATGAACAG i mm10.chr13 C 0 C 0 s canFam3.chr3 14318410 912 + 91889043 TTTTTCTGTC-CCAGCTCTTCTTGC-TTATTACCTGAGTCCCGTGTAATTTTA-CTGTAGGGACTA-----------------------------GATATCAGTCTACTCCTTTTGTCCAAGG---CTCAGCTTTGGAATGCACCTTGG----------TCTTGTCCACA-GCCAGAGCTTCTCCAAACCTCTATTAAACTAAATATTTAATAATATTTCAAGTTTCTTATGCTATTCCTGGAATTCCTATAGGATCAGAAGAGTGCGAAAGCCAG---GAGACATCTAATATTATGATGTGTCCAGGGTCCTGGTCATTCTTTCTGTTTGTGCTATC---CTTTGGTAGTGAGTT-----GGTTTTAATCCC----AAAATGTGCTCTGGGGC-CTAGACTAAGCAATGTGGTCACATCAATTATCTAAATATTGCCTGGTAAAATTATTTCCCTGAAA-GTGGCTAATATAAAAGACATTTATTGTATTA--ATATGGTTTAGTGTACTAGTAAGTACTTTTCTAGGTTTCCATGTAAA-ATCTTTCCTTCAGTGTTATTACTAAGCCTGAGAACATCTTCAGAGGCAATACCTGTGATCTCCCCAGTTAACTCTCCATTTTCTCCATAGAAATTAATCTCAAGGTAG----------ACTATCTTGTGTCATGAGAATTTAATAACAAAGATTATGGCTTAATTTTCCATTTG-ACAGAGGAAACCAGTTATAGCCAAGACCAGCTGTGTTACTAGG------CCTCCC-----TCATCTTTCTTGGAAC-AAATAT------TAAGTGTTGTCTACAGTTAGAATGTGGAACCTCCAAAT-----TCCACTTGTTGTCCTGACTAAGCTTCAGTGTAATTATATAAAGTGCTTTCAGAAAGGGGTACACCTATTCCATTATCCTTCTAAATTTAGAGATAATAAATTTTGACATCCTCCAGGGGAAG-AAAAATCTTCAAAACTCTGAT-GAAAGCAAACCCATGAGCAA i canFam3.chr3 I 14 C 0 s dasNov3.JH570378 1238316 920 - 11655695 TTTTCTTGTC-GCAGCTCTTCCCTCTTTGCTATTATAGTCCAGTGTAA-CTTA-CTCTGGGGGCTAGAAATTCCTTGGGGCTCTTGTTCTCTTTGAGCATCAGCCTGGT-------------G---CTTAGCCTTGAAATATGCCTTGAA-TCTCTGCTCCTTCCCTCCAGAC-AGATCTTCTCCAGGCTTCTGGAAAAT------TTGAATAATTTATCAAGTTTCCTATGCAGTTCCCCAAATCCCTGCATGTTCAGAAGGGCAGGAAAGCCAG--------------------TA--GGCACACAGACCTGGTTATTCTTTGC--------TACT---GTTTCATAGCAAGTT-AGATGGTACTAATCCC----CAGATGTGTTCTGAAGCTTTCAAGGACACAATGAGGCCACATCAATTATCTAAACATTAACTGGT-TAGCCATTTCACTGATA-GCAGTCAACACAAAAGA---ATATT-TGCTA--ATGCTATTTGATATACTAATAAGTGCTTTTCTAGGTTTCCATGTAAATATCTTGTCTCCAGTGTTATTACCAAGACTCAACACTTCTTCAGATTTAATAACTGATAACTCC-CAATTAATTCCCCATTGTCTTCATAGAAATTAATCACAGCATAA----------ATTATCTGATGTCATGGGAATTTAATAACAGAGATTTTGGCCTCATATTTCATTAGTCTGTAGGAGAGCAACTGTGACCAAGACTAGCTGTGCTA-GTAACACCCCCCCCCC--CCAATATCTTTACTGGGAC-AAATATTAATAAAAAGAGTTATCTGTAGTTAGCATGTGGAATCCCCAAAT-----TCCATTTGTTGTTCTGCCTGAACTTCAGTGAAATTATATAAAGTACTTTGATAAGAGGGTGTACCTGTTCCATTATCCTTCTAAATTTAGATATGATAAATTTTGACATCCGCTAGCGGAAGAAAAAATCTTGAAAACTCTGAT-GAAAGCAAACCCATGAACAA i dasNov3.JH570378 C 0 C 0 e otoGar3.GL873536 1302270 1866 - 29863360 I a score=1987020.000000 s hg38.chr5_GL383530v1_alt 37235 113 + 101241 ATTTAAAAGGTAATGTTAATGTTAAATTCCAGGAAAGAAAA---ACTATTTACAGTATATGCTAGGAATATTTGGAAACAATACTAGGAAATATGAATGTGC--------ATGATTAATAAGTA s panTro5.chr5 20265985 113 + 181907262 ATTTAAAAGGTAATGTTAATGTTAAATTCCAGGAAAGAAAA---GCTATTTACAGTATATGCTAGGAATATTTGGAAACAATACTAGGAAATATGAATGTGC--------ATGATTAATAAGTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20282341 113 + 183735486 ATTTAAAAGGTAATGTTAATGTTAAATTCCAGGAAAGAAAA---GCTATTTACAGTATATGCTAGGAATATTTGGAAACAATACTAGGAAATATGAATGTGC--------ATGATTAATAAGTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4769132 112 - 13748885 ATTTAAAAGGTAATGTTAATGTTAAATTCCAGGAAAGAAAA---GCTATTTACAGTATATGCTAGGAATATTTGGAAACAATA-TAGGAAATATGAATGTGC--------ATGATTAATAAGTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53805882 113 - 163208435 ATTTAAAAGGTAATGTTAATGTTAAATTCCAGGAAAGAAAA---GCTATTTACAGTATATGCTAGGAATATTTGGAAACAATACTAGGAAATATGAATGTAC--------ATGATTAATAAGTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87832266 112 - 180051392 ATTTAAAAGGTAATGTCAATGTTAAATTCCAGGAAAG-AAA---GCTATTTACAGTATATGCTAGGAATATTTGAAAACAATACTAGGAAATCTGAATGTGC--------ATGATTAATAAGTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87936686 112 - 181584905 ATTTAAAAGGTAATGTCAATGTTAAATTCCAGGAAAG-AAA---GCTATTTACAGTATATGCTAGGAATATTTGAAAACAATACTAGGAAATCTGAATGTGC--------ATGATTAATAAGTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1159605 112 - 8785636 ATTTAAAAGGTAATGTCAATGTTAAATTCCAGGAAAG-AAA---GCTATTTACAGTATATGCTAGGAATATTTGAAAACAATACTAGGAAATCTGAATGTGC--------ATGATTAATAAGTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1627817 112 + 27333823 ATTTAAAAGGTAATGTCAATGTTAAATTCCAGGAAAG-AAA---GCTATTTACAGTATATGCTAGGAATATTTGAAAACAATACTAGGAAATCTGAATGTGC--------ATGATTAATAAGTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1897914 112 - 91010382 ATTTAAAAGGTAATGTCAATGTTAAATTCCAGGAAAG-AAA---GCTATTTACAGTATATGCTAGGAATATTTGAAAACAATACTAGGAAATATGAATGTGC--------ATGATTAATAAGTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2008957 112 + 5179401 ATTTAAAAGGTAATGTCAATGTTAAATTCCAGGAAAG-AAA---GCTATTTACAGTATATGCTAGGAATATTTGAAAACAATACTAGGAAATCTGAATGTGC--------ATGATTAATAAGTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7715011 112 - 21726897 ATTTAAAAGGTAATGTCAATGTTAAATTCCAGGAAAG-AAA---GCTATTTACAGTATATGCTAGGAATATTTGAAAACAATACTAGGAAATATGAATGTGC--------ATGATTAATAAGTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112535547 113 + 204313951 ATTTAAAAGGTAATGTCAATGTTAAATTCCAGGAAAGACAA---GCTATTTACAGTATATGCTAGGAGTATTTGGAAACAATACTAGGAAATATGAAGATGC--------ATGATTAATAAGTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44981252 113 + 71252344 ATTTAAAAGGTAATGTCAATGTTAAATTCCAGGAAAGAAAA---GCTATTTACAGTATATGCTAGGAATATTTGGAAACAATACTAGGAAATATGAAGGTGC--------ATGATTAATAAGTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 344943 113 - 1393929 ATTTAAAAGGTAATATCAATGTTAAATTCCAGGAAAGAAAA---GTTATTTACAGTATATGCTAGGAATATTTGGAAACAATACTAGGAAATATGAAGGTGC--------ATGATTAATAAGTA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1422189 113 - 15889662 ATTTAAAAGGTAATGTCAATGTTAAATTCCAGGAAAGAAAA---GCTATTTACAGTATATGCTAGGAATATTTGGAAACAATACTAGGAAATATGAAGGTGC--------ATGATTAATAAGTA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84832977 121 + 108143057 ATTTAAAAGGTAATAGCAATGTTAAATTCCAGGAAAGGAAA---GCTATTTACAGTATATGCTAGAAATATTTGGAGACAATACTAGGAAATATGAATGTGCTAGAGTCTGTGATTAATAAGTG i micMur3.chr12 C 0 I 57 s proCoq1.NW_012147189v1 603254 121 - 10520994 ATTTAAAAGGTAATATCAATGTTAAATTCCAGGAAAGGAAA---GCTATTTACGGTATATGCTAGAAATATTTGGAAACAATACTAGGAAATATGAATGTGCTAGAGTGCATGATTAATAAGTG i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 28559220 119 + 29863360 ATTTAAAAGATAATATCAAAGTTAAATTCCAAGAAAGAAAA---CCTATTCACAGTATATGGTAGGAATGTTTGGAAAC--TATTAGGAAACAGGAATGTGCTAGACAGCATGTTTAATAAGTG i otoGar3.GL873536 n 1866 C 0 s mm10.chr13 76461360 121 + 120421639 --TTTAATAATGATGTCGACATTAAATTCCAAGAAAGAAAAGTTGCTATTTACAGTATAGGCTATGAATATTTGGAAACAATACCAGGAAACATGAA-GTGCTAGAGTGTGTGATTAATAAGTA i mm10.chr13 C 0 C 0 s canFam3.chr3 14319322 121 + 91889043 ATTTAATAAGTAATGGCAATGGTAAATTCCAGGAAAGAAAA---GCTATTTACAGTGTATGCTAGGAATATTTGGAAACAATACTAGGAAATATGAATGTGCTAGAATGCATGAGTAATACATA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1239236 116 - 11655695 ATTTAAAAAGTAATGTCAATGTTAGATTCCAGGAAAGAAAA---TCTATTTACAGTATATACTTGAAATA-ATAAAAACAATACTAGGAAATATGAATGTGCTAGAACGAATGAGTAATG---- i dasNov3.JH570378 C 0 C 0 a score=405837.000000 s hg38.chr5_GL383530v1_alt 37348 28 + 101241 TTTTTTAAAGTTTTCAAAGAGTATCAGT s panTro5.chr5 20266098 28 + 181907262 TTTTTTAAAGTTTTCAAAGAGTATCAGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20282454 28 + 183735486 TTTTTTAAAGTTTTCAAAGAGTATCAGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4769244 28 - 13748885 TTTTTTAAAGTTTTCAAAGAGTATCAGT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53805995 28 - 163208435 TTTTTTAAAGTTTTCAAAGAGTATCAGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87832378 28 - 180051392 TTTTTTAAAGTTTTCAAAGAGTATCAGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87936798 28 - 181584905 TTTTTTAAAGTTTTCAAAGAGTATCAGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1159717 28 - 8785636 TTTTTTAAAGTTTTCAAAGAGTATCAGT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1627929 28 + 27333823 TTTTTTAAAGTTTTCAAAGAGTATCCGT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1898026 28 - 91010382 TTTTTTAAAGTTTTCAGAGAGTATCAGT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2009069 28 + 5179401 TTTTTTTAAGTTTTCAAAGAGTATCCGT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7715123 28 - 21726897 TTTTTTAAAGTTTTCAAAGAGTATCAGT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112535660 28 + 204313951 TTTTTTAAAGTTTTCAAAGAGCATCGGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44981365 28 + 71252344 TTTTTTAAAGTTTTCAAAGAGCGTCAGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 345056 28 - 1393929 TTTTTTAAAGTTTTCAAAGAGCGTCAAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1422302 28 - 15889662 TTTTTTAAAGTTTTCAAAGAGTGTCAGT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 603375 28 - 10520994 TTTTTTTAAGTTTGTAAATAGCGTCGGT i proCoq1.NW_012147189v1 C 0 I 17 s otoGar3.GL873536 28559339 28 + 29863360 CGTTTTAAAGTTTACAAATGGCATGGGT i otoGar3.GL873536 C 0 I 17 s mm10.chr13 76461481 27 + 120421639 -TTTTTAAAGTTTACGCATAGCATTTGT i mm10.chr13 C 0 C 0 s canFam3.chr3 14319443 27 + 91889043 TTTTTTAAAGTTTG-GAGTGGTATCAGT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1239352 28 - 11655695 TGTTTTAAAGTTTGTAAATAGCACCTGT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84833098 57 + 108143057 I a score=9031992.000000 s hg38.chr5_GL383530v1_alt 37376 610 + 101241 AATCATACATCTGTAATCTTA-CTGAGAAGTGAGTCTGTCTTGTTGCTTT-CTGAAATCTTTACTGTG--CAT--TTTCAGTTGTGGATTCCACTAGG--GCTGTATA------TACGCATC-----TGCT--AGTGATATACCCTTTGG-ATGGTCAATAAAAATGCCAAGTGAAAAACATTTAAAT--CTTCTTTTTA-TTTAGCAGTTTTCTTCCAGAGGTAGCCTCAGGAGAAATGATACTGGCTGCTCTCTTGTACTTTACTAATAATAGTAATTTAAAGATGAAGTATTTGAAAAGATTGGCATGTAAGTCAGGAAGGGACAGTTGCACAGTTTAGATTGAAGAGAAAATAAGTATCTGTTTGCTTGTTGCCAGATTATCCATCAGCTTAATGCAA--CTGCAATTTCTCACTTC-G-TATGACAGTGTGTTTATAACAAGAATTTATAATTTTGCCATTTCACTTCTCAGTTTGTGTGACCTTATGTCTCTTGC-CATAGCTActtcttagagtgctgtga-t--atcgga--cacctttgacatctggtgggatttcctctgaatgccta-----aggagaaactcataca---atttgtgtagagccat-cccagcaggtacctttcaggcttgggagctt----------------GGAA s panTro5.chr5 20266126 611 + 181907262 AATCATACATCTGTAATCTTA-CTGAGAAGTGAGTCTGTCTTGTTGCTTT-CTGAAATCTTTACTGTG--CAT--TTTCAGTTGTGGATTCCACTAGG--GCTGTATA------TACGCATC-----TGCT--AGTGATATACCCTTTGG-ATGTTCAATAAAAATGCCAAGTGAAAAACATTTAAAT--CTTCTTTTTA-TTTAGCAGTTTTCTTCCAGAGGTAGCGTCAGGAGAAATGATACTGGCTGCTCTCTTGTACTTTACTAATAATAGTAATTTAAAGATGAAGTATTTGAAAAGATTGGCATGTAAGTCAGGAAGGGACAGTTGCACAGTTTAGATTGAAGAGAAAATAAGTATCTGTTTGCTTGTTGCCAGATTATCCATCAGCTTAATGCAA--CTGCAATTTCTCACTTC-G-TATGACAGTGTGTTTATAACAAGAATTTATAATTTTGCCATTTCACTTCTCAGTTTGTGTGACCTTATGTCTCTTGTACATAGCTActtcttagagtgctgtga-t--atcgga--cacctttgacatctggtgggatttcctctgaatgccta-----aggagaaactcataca---atttgtgtagagccat-cccagcaggtacctttcaggcttgGTAGCTT----------------GGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20282482 611 + 183735486 AATCATACATCTGTAATCTTA-CTGAGAAGTGAGTCTGTCTTGTTACTTT-CTGAAATCTTTACTGTG--CAT--TTTCAGTTGTGGATTCCACTAGG--GCTGTATA------TACGCATC-----TGCT--AGTGATATACCCTTTGG-ATGGTCAATAAAAATGCCAAGTGAAAAACATTTAAAT--CTTCTTTTTA-TTTAGCAGTTTTCTTCCAGAGGTAGCATCAGGAGAAATGATACTGGCTGCTCTCTTGTACTTTACTAATAATAGTAATTTAAAGATGAAGTATTTGAAAAGATTGGCATGTAAGTCAGGAAGGGACAGTTGCACAGTTTAGATTGAAGAGAAAATAAGTATCTGTTTGCTTGTTGCCAGATTATCCATCAGCTTAATGCAA--CTGCAATTTCTCACTTC-G-TATGACAGTGTGTTTATAACAAGAATTTATAATTTTGCCATTTCACTTCTCAGTTTGTGTGACCTTATGTCTCTTGTACATAGCTActtcttagagtgctgtga-t--atcgga--cacctttgacatctggtgggatttcctctgaatgccta-----aggagaaactcataca---atttgtgtagagccat-cccagcaggtacctttcaggcttgggagctt----------------GGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4769272 611 - 13748885 AATCATACATCTGTAATCTTA-CTGAGAAGTGAGTCTGTCTTGTTGTTTT-CTGAAATCTTTACTGTG--CAT--TTTCAGTTGTGGATTCCACTAGG--GCTGTATA------TACGCATC-----TGCT--AGTGATATACCCTTTGG-ATGGTCGATAAAAATGCCAAGTGAAAAACATTTAAAT--CTTCTTTTTA-TTTAGCTGTTTTCTTCCAGAGGTAGCATCAGGAGAAATGATACTGGCTGCTCTCTTGTACTTTACTAATAATAGTAATTTAAAGATGAAGTATTTGAAAAGATTGGCATGTAAGTCAGGAAGGGACAATTGCACAGTTTAGATTGAAGAGAAAATAAGTATCTGTTTGCTTGTTGCCAGATTATCCATCAGCTTAATGCAA--CTGCAATTTCTCACTTC-G-TATGACAGTGTGTTTATAACAAGAATTTATAATTTTGCCATTTCACTTCTCGGTTTGTGTGACCTTATGTCTCTTGTACATAGCTActtcttagagtgctgtga-t--attgga--cacctttgacatctggtgggatttcctctgaacgccta-----gggagaaactcataca---atttgtgtagagccat-cccagcaggtacctttcaggcttgGGAGCTT----------------GGAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53806023 608 - 163208435 AATCATACATCTGTAATCTTA-CTGAGAAGTGAATCTATCTTGTTGCTTT-CTGAAATCTTTACTGTG--CAT--TTTCAGTTGTGGATTCCACTAGG--GCTGTATA------TATGCATC-----TGCT--AGTGATATACCCTTTGG-ATAGTCAATAAAAATGCCAAGTGAAAAACACTTAAA-----TCTTTTTA-TTTAGCAGTTTTCTTCCAGAGGTAGCGTTAGGAGAAATGATACTGGCTTCTCTCTTGTATTTTACTAATAATAGTAATTTAAAGATGAAGTATTTGAAAAGATTGGTATGTAAGTCAGGAGGGGACAGTTGCACAGTTTAGATTGAAGAGAAAATAAGTATTTGTTTGCTTGTTGCCAGATTATCCATCAGCTAAATGCAA--CTGCAGTTTCTCACTTC-G-TATGACAGTGTGTTTATAACAAGAATTTATAATTTTGCCATTTCACTTCTCGGTTTGTGTGACCTTATGTCTCTTGTATATAGCTACTTCTTACAGTGCTGTGA-T--ATTGGA--CACCTTTGACATCTGGTGGGATTTCCTCTGAACGCCTA-----AGAAGAAACTCATACA---ATTTGTGTAGAGCCAT-CCCAGCAGGTACCTTTCAGGCTTGGGAGCTT----------------GGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87832406 609 - 180051392 GATCATACATCTGTAATCTTA-CTTAGAAGTGAATCTGTCTTGTTGCTTT-CTGAAATCTTTACTGTG--CAT--TTTCAGTTGTGGATTCCACTAGT--GCTGTATA------TACGCATT-----TGCTAGAGTGATATACCCTTTGG--TAGTCAATAAAAATGCCAAGTGAAAAACATTGAAA-----TCTTTTTA-TTTAGCAGTTTTCTTCCAGAGGTAGCATCAGGAGAAATGATACTGGCTGCTCTCTTATACTTTACTAATAATAGTAATTTAGAGATGAAGTATTTGAAAAGATTGGCATGTAAGTCAGGAGGGGACAGTTGCATAATTTAGATTGAAGAGAAAATAAGTATCTGTTTCCTTGTTGCCAGATTATCCATCAGCTTAATGCAA--CTGCAGTTTCTGACTTT-G-TATGACAATGCGTTTATAACAAGAATTTATAATTTTGCCATTTCACTTCTCGGTTTGTGTGACCTTATGTCTCTTGTACATAGCTActtcttagagtgttgtga-t--attgga--tacctttgacatctggtggaatttcctctgaacgccta-----aggagaaactcatacc---atttctgtagagccat-cgcagcaggtacctttcatgcttgGGAGCTT----------------GGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87936826 609 - 181584905 GATCATACATCTGTAATCTTA-CTTAGAAGTGAATCTGTCTTGTTGCTTT-CTGAAATCTTTACTGTG--CAT--TTTCAGTTGTGGATTCCACTAGT--GCTGTATA------TACGCATT-----TGCTAGAGTGATATACCCTTTGG--TAGTCAATAAAAATGCCAAGTGAAAAACATTGAAA-----TCTTTTTA-TTTAGCAGTTTTCTTCCAGAGGTAGCATCAGGAGAAATGATACTGGCTGCTCTCTTATACTTTACTAATAATAGTAATTTAGAGATGAAGTATTTGAAAAGATTGGCATGTAAGTCAGGAGGGGACAGTTGCATAATTTAGATTGAAGAGAAAATAAGTATCTGTTTCCTTGTTGCCAGATTATCCATCAGCTTAATGCAA--CTGCAGTTTCTGACTTT-G-TATGACAATGCGTTTATAACAAGAATTTATAATTTTGCCATTTCACTTCTCGGTTTGTGTGACCTTATGTCTCTTGTACATAGCTActtcttagagtgttgtga-t--attgga--tacctttgacatctggtggaatttcctctgaacgccTA-----AGGAGAAACTCATACC---ATTTCTGTAGAGCCAT-CACAGCAGGTACCTTTCATGCTTGGGAGCTT----------------GGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1159745 609 - 8785636 GATCATACATCTGTAATCTTA-CTTAGAAGTGAATCTGTCTTGTTGCTTT-CTGAAATCTTTACTGTG--CAT--TTTCAGTTGTGGATTCCACTAGT--GCTGTATA------TACGCATT-----TGCTAGAGTGATATACCCTTTGG--TAGTCAATAAAAATGCCAAGTGAAAAACATTGAAA-----TCTTTTTA-TTTAGCAGTTTTCTTCCAAAGGTAGCATCAGGAGAAATGATACTGGCTGCTCTCTTATACTTTACTAATAATAGTAATTTAGAGATGAAGTATTTGAAAAGATTGGCATGTAAGTCAGGAGGGGACAGTTGCATAATTTAGATTGAAGAGAAAATAAGTATCTGTTTCCTTGTTGCCAGATTATCCATCAGCTTAATGCAA--CTGCAGTTTCTGACTTT-G-TATGACAATGCGTTTATAACAAGAATTTATAATTTTGCCATTTCACTTCTCGGTTTGTGTGACCTTATGTCTCTTGTACATAGCTActtcttagagtgttgtga-t--attgga--tacctttgacatctggtggaatttcctctgaacgccta-----aggagaaactcatacc---atttctgtagagccat-cgcagcaggtacctttcatgcttgGGAGCTT----------------GGAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1627957 609 + 27333823 GATCATACATCTGTAATCTTA-CTTAGAAGTGAATCTGTCTTGTTGCTTT-CTGAAATCTTTACTGTG--CAT--TTTCAGTTGTGGATTCCACTAGT--GCTGTATA------TACGCATT-----TGCTAGAGTGATATACCCTTTGG--TAGTCAATAAAAATGCCAAGTGAAAAACATTGAAA-----TCTTTTTA-TTTAGCAGTTTTCTTCCAGAGGTAGCATCAGGAGAAATGATACTGGCTGCTCTCTTATACTTTACTAATAATAGTAATTTAGAGATGAAGTATTTGAAAAGATTGGCATGTAAGTCAGGAGGGGACAGTTGCATAATTTAGATTGAAGAGAAAATAAGTATCTGTTTCCTTGTTGCCAGATTATCCATCAGCTTAATGCAA--CTGCAGTTTCTGACTTT-G-TATGACAATGCGTTTATAACAAGAATTTATAATTTTGCCATTTCACTTCTCGGTTTGTGTGACCTTATGTCTCTTGTACATAGCTActtcttagagtgttgtga-t--attgga--tacctttgacatctggtggaatttcctctgaacgccta-----aggagaaactcatacc---atttctgtagagccat-cgcagcaggtacctttcatgcttgGGAGCTT----------------GGAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1898054 610 - 91010382 GATCATACATCTGTAATCTTA-CTTAGAAGTGAATCTGTCTTGTTGCTTT-CTGAAATCTTTACTGTG--CAT--TTTCAGTTGTGGATTCCACTAGT--GCTTTATA------TACGCATT-----TGCTAGAGTGATTTACCCTTTGG-ATAGTCAATAAAAATGCCAAGTGAAAAACATTGAAA-----TCTTTTTA-TTTAGCAGTTTTCTTCCAGAGGTAGCGTCAGGAGAAATGATACTGGCTGCTCTCTTATACTTTACTAATAATAGTAATTTAGAGATGAAGTGTTTGAAAAGATTGGCATATAAGTCAGGAGGAGACGGTTGCATAGTTTAGATTGAAGAGAAAATAAGTATCTGTTTCCTTGTTGCCAGATTATCCATCAGCTTAATGCAA--CTGCAGTTTCTCACTTT-G-TATGACAATGCGTTTATAACAAGAATTTATAATTTTGCCATTTCACTTCTCGGTTTGTGTGACCTTATGTCTCTTGTACATAGCTActtcttagagtgttgtga-t--attgga--tacctttgacatctggtggaatttcctctgaacgccta-----aggagaaattcatacC---ATTTCTGTAGGGCCAT-CCCAGCAGGTACCTTTCATGCTTGGGAGCTT----------------GAAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2009097 609 + 5179401 GATCATACATCTGTAATCTTA-CTTAGAAGTGAATCTGTCTTGTTGCTTT-CTGAAATCTTTACTGTG--CAT--TTTCAGTTGTGGATTCCACTAGT--GCTGTATA------TACGCATT-----TGCTAGAGTGATATACCCTTTGG--TAGTCAATAAAAATGCCAAGTGAAAAACATTGAAA-----TCTTTTTA-TTTAGCAGTTTTCTTCCAGAGGTAGCATCAGGAGAAATGATACTGGCTGCTCTCTTATACTTTACTAATAATAGTAATTTAGAGATGAAGTATTTGAAAAGATTGGCATGTAAGTCAGGAGGGGACAGTTGCATAATTTAGATTGAAGAGAAAATAAGTATCTGTTTCCTTGTTGCCAGATTATACATCAGCTTAATGCAA--CTGCAGTTTCTGACTTT-G-TATGACAATGCGTTTATAACAAGAATTTATAATTTTGCCATTTCACTTCTCGGTTTGTGTGACCTTATGTCTCTTGTACATAGCTACTTCTTAGAGTGTTGTGA-T--ATTGGA--TGCCTTTGACATCTGGTGGAATGTCCTCTGAACGCCTA-----AGGAGAAACTCATACC---ATTTCTGTAGAGCCAT-CGCAGCAGGTACCTTTCACGCTTGGGAGCTT----------------GGAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7715151 611 - 21726897 GATCATACATCTGTAATCTTA-CTTAGAAGTGAATCTGTCTTGTTGCTTT-CTGAAATCTTTACCGTG--CAT--TTTCAGTTGTGGATTCCACTAGT--GCTGTATA------TACACATT-----TGCTAGAGTGATATACCCTTTGG-ATAGTCAATAAAAATGCCAAGTGAAAAACATTGAAA-----TCTTTTTA-TTTAGCAGTTTTCTTCCAGAGGTAGCGTCAGGAGAAATGATACTGGCTGCTCTCTTATACTTTACTAATAATAGTAATTTAGAGATGAAGTATTTGAAAAGATTGGCATGTAAGTCAGGAGGGGACATTTGCATAGTTTAGATTGAAGAGAAAATAAGTATCTGTTTCCTTGTTGCCAGATTATCCATCAGCTTAATGCAA--CTGCAGTTTCTCACTTT-G-TATGACAATGCATTTATAACAAGAATTTATAATTTTGCCATTTCACTTCTCGGTTTGTGTGACCTTATGTCTCTTGTACATAGCTActtcttagagtgttgtga-t--attgga--tacctttgacatctggtggaatttcctctgaacgccta-----aggagaaactcacacc---atttctgtagagccat-cccagcaggtacctttcatgcttgggagctt---------------gggaa i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112535688 613 + 204313951 GATTATACATTTGTAATCTTA-CTTGGAAGTGAATCTGTCTTCTTGTTTT-CTGAAATCTTTATTGTG--CAT--TTTCAGTTGTAGAGTCCACTAGG--GTTGTATA------TTGGCATC-----TGCTAGAGTGATGTGCCCTTTGG-GTCGTCAGTACAAATGCCAAGTGAAATACATTGAAAT--CTTCTTTTTA-TTTAGCATTTTTCTTCCAGAGAGAGCATCAAGAGAATTGATACTTGCTGCCCTCTTGTACTTTACTAATGACAGTAATTTAGAGATGAAGTATTTGAAAAGCTTGGCATGTAAGTCAGGAGGGGACAGTTGCACAGTTTAGATTGAAGAGAAAGTAAGTATCTATTTGCTTGTTGCCAGATTATCCATCAGCTTAATGCAA--CTGCAATTTCTCACTTC-A-TATGGCAGTGTGTTTAAAACAAGAATTTACAATTTTGCCATCTCAGTTCTCTGTTTGTGTGACCTTATGTCTTTTGTACATAGCTTCTTCTTAGAGTGTTGTGA-T--ATTGGA--CACCTTTGACGTCTGGTGGGATTTCCTCTGAACGTCTA-----AGGAGAAACTCATATA---ATTTCTGTAGAGCCAC-CTCAGCAGGTACCTTTCAGGCTTGGGAGCTT----------------AGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44981393 606 + 71252344 GATCATACATTTGTAATCTTA-CTTGGAAGTGAATCTGTCTTCTTGTTTT-CTGAAATCTTTATTGCA--CAT--TTTCAGTTGTAGAGTCCACTAGG--GTTGTATA------TTCGCATC-----TGCTAGAGTGATATGCCCTTTGG-GTAGTCAGTACAAATGCCAAGTGAAATACATCAAAA-----TCTTTTTA-TTTAGCATTTTTCTTCTAGAGAGAGTATCAGGAGGAATGATACTTGCTGCACTCTTGTACTTTACTAATGACAGTAATTTAGAGATGAAGTATTTGAAAAGCTTGGCATGTAAGTCAGGAGGGGACAGTTGCACAGTGTAGATTGAAGAGAAAGTAAGTATC----TGCTTGTTGCTAGATTATCCATCAGCTTAATGCAA--CTGCAATTTTTCACTTC-A-TATGACAGTGTACTTAAAACAAGAATTTATAATTTTGCCATCCCACTTCTCCGTTTGTGTGACCTTATGTCTTTTGTACATAGCTTCTTCTTAGAGTGTTGTGA-T--ATTGGA--CACCTTTGACGTCTGGTGAGATTTCCTCTGAATGCTTA-----AGGAGAAACTCATATA---ATTTCTGTAGAGCCAC-CCCAGCAGGTACCTTTCAGGCTTGGGAGCTT----------------GGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 345084 612 - 1393929 GATCATACATTTGTAATCTTA-CTAGGAAGTGAATCTGTCTTCTTGTTTT-CTGAAACCTTTATTGTG--TAT--TTTCAG-TGTTGAGTCCACTAGG--GTTGTATA------TTCGCATC-----TGCTAGAGTGATGTGCCCTTTGG-GTAGTCAGTACAAATGCCAAGTGAAATACATTGAAAT--CATCTTTTTA-TTTAGCATTTTTCTTCCAGAGAGAGCATCAGGAGAAATGATACTTGCTGCACTCTTGTACTTTACTAATGACAGTAATTTAGAGATGAAGTATTTGAAAAGCTTGGCATGTAAGTCAGGAGGGGACAGTTGCACAGC-TAGATTGAAGAGAAAATAAGTATCTGTTTGCTTGTTACCAGATTATCCATCAGCTTAATGCAA--CTGCAATTTCTCACTTC-A-TATGACAGTGTGTTTAAAACAAGAATTTATAATTTTGCCATCTCACTTCTCTGTTTGTGCGACCTTATGTCTTTTGTACGTAGCttcttcttagagtattgtgatt--attgga--cacctttgacatctggtgggatttcctctgaacaccta-----aggagaaactcatata---atttctgtagagccac-cccagcaggtacctttcaggcttgggagctt----------------GGAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1422330 581 - 15889662 GATCATACATTTGTAATCTTATTTTGGAAGTGAATCTGTGTTCTTG-TTT-CTGAAATCTTTATTGTG--CAT--TTTCAGTTGTAGAGTCCACTAGG--GTTGTATA------TACGCATC-----TGCTAGAGTGATGTGCCCTTTGG-GTAGTCAGTACAAATGCCAAGTGAAATACATTGAAAT--CTTCTTTTTA-TTTAGCATTTTTCTTCCAGAGAGAGCATCAGGAGAAATGATACTTGCTGCACTCTTGTACTTTACTAATGACAGTAATTTAGAGATGAAGT--------------------------------GACAGTTGCACAGTTTAGATTGAAGAGAAAGTAAGTATCTGTTTGCTTGTTGCCGGATTATCCATCAGCTTAATGCAA--CTGCAGTTTCTCACTTC-A-TATGACAGTGTGTTTAAAACAAGAATTTATAATTTTATCATCTCATTTCTTGGTTTATGTGACCTTATGTCTTTTGTACATAGCttcttcttagagtattgtga-t--attgga--cacctttgacatctggtgggattttctctgaacgccta-----aggagaaactcatata---atttctgtagagccac-cccagcaggtagctttcaggcttgggagctt----------------GGAA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84833155 645 + 108143057 AATCATGCATCTGTGGTCTTA-CTTGGAAGTGAATCTGTCTTGTTGCTTT-CTGAAATCCTTACTGTGCGTGT--CTTCAGTTGTAGATTCTACTGGG--GCTGTATATAACCTTATATATC-----TGTTAGAGTCATGTACCCTTTGG-GTAGTCAATAAAAATGCTAACCAAGAAGAGTTGGAACTCTCTCTTTTTG-TTTAGTCTTTTCCTTCCACAG--AGCTTCAGGAGAGAGGATGCTGGCTGTACTCTTGTACTTTACTAATGATAGTAATTTGGTGATGAAGTCTTTGAAAAGCTTGGCCTGTAAGTCAGGAGGAGACATTTGCACAGTTTAGATTGAAAAGACAGTAAGTATCTGTTTGCTTGCCGCCATATTATCCGTCAGCCTAATGCAA--CTGCAGTTTCTCATTTTGG-TATGACAGTGTGTTTATAACAAGAATTTATAATTTTTTCATCTCACTTCTCAGTGTGTGTGACCTTATGTCGCTTGTACATGGCTGCGTCTGAGAGTGTTGCAA-T--ATTGgg--cacctttgacatctggtgggaattcctctgcacatctcttcttaggagaaactcatatagacatttCTG-GGGGCCAT-CCCAGCAGGTACCTGTCAGGCTTGGGAGTCTCATTCTCCTCTGAGCTGGAG i micMur3.chr12 I 57 C 0 s proCoq1.NW_012147189v1 603420 645 - 10520994 AATCATGCATCTGTGGTCTTA-CTTGGAAGTGAATCTGTCTCGTTGCTTT-CTGAAATCTTTACTGTGCATGT--CTTCAGCTGTGGATTCTACTAGA--GCTCTATATAACCTTATGCATC-----TGCTAGAGTCATGTACCCTTTGG-GTAGTCAATAAAAATGCTAACCAAGAGGAGTTGAAAGTCTCTCTTTTTA-TTTAGTCTTTTCCTTCCACAG--AGCTTCAAGAGAAAGGATACTGGCTGTACTCTTGTACTTTACTAATGATAGTAATTTGATGATGAAGTCTTTGAAAAGCTTGGCATGTAAGTCAGAAGGAGACATTTACACAGTTTAGATTGAAAAGACAGTAAGTATCTGTTTGCTTGCTGCCATATTATCCATCAGCCTAATGCAA--CTGCAGTTTCTCACTTGAG-CATGACAGTGTGTTTATAATAAGAATTTATAATTTTTCCATCTCACTTCTCAATGTGTGTGACCTTATGTCTCTTGTACATGGCTGCGTCTGAGAGTGTTGTGA-T--ATTGGG--CACCTTTGACATCTGGTGGGATATCCTCTGAATATCTCTTTTTAGGAGAAACTCACATAGACATTTCTG-GGGGCCAT-CCCAACAGGTACCTGTCAGACTTGGGAGCCTCATTCTCCTCTGAGCTGGAG i proCoq1.NW_012147189v1 I 17 C 0 s otoGar3.GL873536 28559384 612 + 29863360 AATCACACATC--TGGTCGTT-CCT-GAAGGAAATCTGTCCTGTCACTTT-CTGAAGTCCGCTCCTCG-GTAT--CTTCAG-TGTGGATTCCACCAGC--GCTGTATGTAAACTTACGCATT-----TGCATGAGTCCTGCACCCTTGGG-GTAGCCAATAAAAATGCTGACCAAGGAGAGATGAAATTCTCTCTTTTTA-TTTAGTCTTTTTCTCCTGGAG--AACTTCAGGGGAAAGGATACTGGTTGCACTTTTGTACTTTACTAATGATAGTGATTTGGAGGTGGAGTCTTTGGAAACCTTG----------CAGGAGGAGACATTTGCACAGTTTAGATTGAGAAGACAGTGAGGATCTG-----TTGCTACCATGTTATCCATCAGCTTAATGCAG--CTGCAGTTTCTCACTTTGG-TATGACA-TGTGCTTAT---AAGAACTTACAATTTTGCCATCTCACTTCTCATTGTATGGGA---------TCTTGTACATGGCTGTGCCTGTCAGTGCTGTGA-T--ACTGGG--CACCTTTGACATCTGGTGGGATTTCCTCTGAACACCTCTTCTTAGCAGAAATTCATATAGGCATTTCTG-GAGGCCAT-TCCAGCAGGTAGCTGTCAGAGTTGGGAGCCTTGTTCTCCTCCAAGCTGGAG i otoGar3.GL873536 I 17 T 19760 s mm10.chr13 76461508 564 + 120421639 GACTGTGCATCATATGTCTCA-C--------------------------T-CTGACTCCTTTACTGTA--CAT---GTCTTCTGTGGATTCAAGTAGGATGCTGCCTG--ACCTTCAGTATCCTACTTGAATGAGTCATGTACTCTCTGG-GTAGT-AATAAAAATTAC-ATTGAATAGAGTTGAAAC--CTCCTTTCTA-CTTCATCTTTTTCTTCTAGAGGCAGCCTTGGGTGAGATGACACTAGCTGCACTCTTGTACATTGCTAATGATAGTAATTTCCAGATGACATCTTTGAGGAACTTGGCATGCAAGTCAGGAGAGGGCAGTATCACAATTTAGAACGAAAGCACACTAAGTATATGT----TTGCTGCCAGATGACCC------------CTA--CCCCAG------------A-TTAAACAACATGCTTATAAAAAGCATTTAAAATTCTGCCCTTTCAAT------TGTGTGAGAATTTTTGTCTTTGATACATGGCTGCTTTTGAGAGCTTTGTAG-C--ATCTGA--TACCTTTAACATTTCATGGA--CTCCACTTAA-ACCTT-----AGAAGTAATTCAGGTA---A-----------ACAT-ATCAGCAGTTACCTGTCAGGCTTGGGAGATTCACCACCCTCTGAGCTGTAG i mm10.chr13 C 0 C 0 s canFam3.chr3 14319470 637 + 91889043 GAGCATACATCTGTGGTCTTA-CTGA-AAGCGAATCTGTCTTGTTGGTCT-TTGAGAGCTTTACCGTG--TGTGCCTCCAATTGTGAACACCGCCAGG--GCTGTGCATAACCATATACATA-----TGCTAGAGTCATGTACCCCTTGGGGTAGTCAATAAAAATGCTAACTGAAAAGAATTGA-----TTTGTTTGTATTTTGGGTTTTTTCTTCCAGAGATAGCTTCAGGAGAAATAATTCTGGCTGCCCTCTTGTAC-TTATTAATGATAGTAATTTGGAGATGACGTCTTCGAAAAGCTTGGCATGCAAGACAGCAGGGAACAGTTGCACAGCTTAGATTGGAGAGACAATAAGTATGTGTTTGTTTGCTGCCAGATTATCCATCCACTTAATGCAGCTCTGCAATTTCTCACTTT-GCTCTATCAGTGTGTTGATAGCAAGAATTTATAATTCT-CCATCTCACTCCTCAGCATGTGTGACC-CACGTCTCTTGTA-ATGGCTGCTTC--GGAGTGTTGTGG-TAGATGGAG--GGGCTTTGACATCTGGTGGAATTTCCTCTGAACACCTC-----GAGAGAAACTCATGTAGACGTTTCTGTTGGGGCAT-CCCAGCAGGTACCTGTCAGCCTTGGGAGCTTCACGCTCTTTTGAGCTGGAA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1239380 643 - 11655695 GATCATACATTTGTGGTTTTA-CTTGAAAGTAAAACTGTGTTGTTGCTTTAAAAAAATCTTAATTGCATATAT--CTTCAGTGGTGAATTCCACTAGG--ACCATATATAAATTTATGCATC-----TGCTAGAGTCATGTGCTCCTTGG-ATAGTCTGTAAAAATGCTAGCTGAAAAG-ACTGAATTATTTTCCTTCTA--CTAGTCCTTTTCTCTCAGTGATCACTTTATGGGAGATCTTACTGGCTGCGCTTTCATACTTTACTAATGATAATAATTTGAAGATTAAATCTTTGAAAATCTTGGCATGCAAGTCAGGAGGCGACAGTTGCATAGCTTAGATTGAAAAGACAATAAATATATGT----TTGCTGCCAGATTATCCATCAACTTAATGCAATTCTGCAATTTCTTGCTCTGG-GATGAGTAAATGTTCCTAATAAGAATTTTAAATTCTACAATCTTGCTTTCCAGTGTGCATGATCTTATGTCTGCTGTACACTGCTGCTTTTGAGAGTGTCATGA-T--TATGGAAGGAACTTTGACACCAGCTGCAATTTCCTTTGAGTTCCAC-----AAGAGAAACTAATTAAGACATTACTCTGGGACCATCCCCAGTACATACCTGGCAGACTTTGGAGCCTCGCACTCCTCTGAGCTATAG i dasNov3.JH570378 C 0 C 0 a score=758058.000000 s hg38.chr5_GL383530v1_alt 37986 51 + 101241 AAATGCTGATAGAACACAGT-GTAGAGGA-ATAAATGCCAAGAGAATATTCTT s panTro5.chr5 20266737 51 + 181907262 AAATGCTGATAGAACACAGT-GTAGAGGA-ATAAATGCCAAGAGAATATTCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20283093 51 + 183735486 AAATGCTGATAGAACACAGT-GTAGAGGA-ATAAATGCCAAGAGAATATTCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4769883 51 - 13748885 AAATGCTGATAGAACACAGT-GTAGAGGA-ATAAATGCCAAGAGAATATGCTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53806631 51 - 163208435 AAATGCTGGTAGAACACAGT-GTAGAGGA-ATAAATGCCAAGAGAATATTCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87833015 52 - 180051392 AAATGCTGGTAGAACACAGTAGTAGAGGA-ATAAATGCCAAGAGAATATTCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87937435 52 - 181584905 AAATGCTGGTAGAACACAGTAGTAGAGGA-ATAAATGCCAAGAGAATATTCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1160354 52 - 8785636 AAATGCTGGTAGAACACAGTAGTAGAGGA-ATAAATGCCAAGAGAATATTCTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1628566 52 + 27333823 AAATGCTGGTAGAACACAGTAGTAGAGGA-ATAAATGCCAAGAGAATATTCTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1898664 52 - 91010382 AAATGCTGGTAGAACACAGTAGTAAAGGA-ATAAATGCCAAGAGAATATTCTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2009706 52 + 5179401 AAATGCTGGTAGAACACAGTAGTAGAGGA-ATAAATGCCAAGAGAATATTCTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7715762 52 - 21726897 aaatgctagtagAACACAGTAGTAGAGGA-ATAAATGCCAAGAGAATATTCTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112536301 52 + 204313951 AAATGCCAGTAGAACACAGTACTATAGGA-ATAAATGCCAAGAGAATATTCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44981999 52 + 71252344 AAATGCCAGTAGAACACAGTACTATAGGA-ATAAATGCCAAGAGAATATTCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 345696 52 - 1393929 GAATGCCAGTAGAACACAGTACTAAAGGA-ATAAATGTCAAGGGAATATTCTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1422911 52 - 15889662 AAATGCCAGTAGAACACAGTACTGTAGGA-ATAAATGCCAAGAGAATATTCTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84833800 52 + 108143057 AAATGCCAGTATGACGCAGTAGCAGAGGACAC-ATTGCCAAGAGAATATTCTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 604065 51 - 10520994 AAATACCAGTATAACACAGTAGCAGAGGA-AC-AATGCCAAGAGAATATTCTT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1304136 51 - 29863360 AAATGCCAGCATAGCACAGAGGCAGGGAA-AT-ACCGTTGAGAGAATATTCTT i otoGar3.GL873536 I 1866 C 0 s mm10.chr13 76462072 51 + 120421639 AAATGTCAACAGCACATGTAATTCAAGAA-AT-AGTCTCAGGAGAATATTCTT i mm10.chr13 C 0 I 16 s canFam3.chr3 14320107 39 + 91889043 AAATGCCAGTAGAACAC-------------AT-AATGCCAAGAAAATAGTCTT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1240023 51 - 11655695 AAATGCCAGTGGAATACAATATCAGATAA-AT-AATGCCAAGAGAATATTTTT i dasNov3.JH570378 C 0 C 0 a score=661569.000000 s hg38.chr5_GL383530v1_alt 38037 40 + 101241 GCTACGGGTAGCTGTGGAAAATGGACAACCTACAGGATAG s panTro5.chr5 20266788 40 + 181907262 GCTACGGGTAGCTGTGGAAAATGGACAACCTACAGGATAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20283144 40 + 183735486 GCTACGGGTAGCTGTGGAAAATGGACAACCTACAGGATAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4769934 40 - 13748885 GCTACGGGTAGCTGTGGAAAATGGACAACCTACAGGATAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53806682 40 - 163208435 GCTATAGGTAGCTGTGGAAAATGGACAACCTACAGGATAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87833067 40 - 180051392 GCTATGGGTAGCTGTGGAAAATGGACAACCTACAGGATGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87937487 40 - 181584905 GCTATGGGTAGCTGTGGAAAATGGACAACCTACAGGATGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1160406 40 - 8785636 GCTATGGGTAGCTGTGGAAAATGGACAACCTACAGGATGG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1628618 40 + 27333823 GCTATGGGTAGCTGTGGAAAATGGACAACCTACAGGATGG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1898716 40 - 91010382 ACTATGGGTAGCTGTGGAAAATGGACAACGTACAGGATGG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2009758 40 + 5179401 GCTATGGGTAGCTGTGGAAAATGGACAACCTACAGGATGG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7715814 40 - 21726897 GCTATGGGTAGCTGTGGAAAATGGACAACCTACAGGATGG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112536353 40 + 204313951 GCCATGGGTAGCTGTGGAAAACGGACAACCTGCAGGATGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44982051 40 + 71252344 GCCATGGGTAGCTGTGGAAAATGGACAACCTGCAGGATGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 345748 40 - 1393929 GCCATGGGTAGCTGTGGAAAATGGACAACCTACAGGATGG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1422963 40 - 15889662 GCCATGGGTAGCTGTGGAAAATTGACAACCTGCAGGATGG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84833852 40 + 108143057 GCTCTGGGTAGCTGTGGAAAAAGGACAGCCTACAGGATGG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 604116 40 - 10520994 GCTCTAGGTAGCTATGGAAAAAGGACAGCCTACAGGATGG i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1304187 40 - 29863360 GCTGTGGGTAGCTGTGGACGAAGGACAGCCTACTGGATGA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14320146 40 + 91889043 GCTTTGGGTAGCTATGGAAAAAGGACAGGCTGTAAGATGG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1240074 40 - 11655695 ATTACAGATAGCTGTAGAAAAAGGACAATTTACAGGATAG i dasNov3.JH570378 C 0 I 442 e mm10.chr13 76462123 16 + 120421639 I a score=91232.000000 s hg38.chr5_GL383530v1_alt 38077 6 + 101241 AGTAGT s panTro5.chr5 20266828 6 + 181907262 AGTAGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20283184 6 + 183735486 AGTAGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4769974 6 - 13748885 AGTAGT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53806722 6 - 163208435 AGTAGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87833107 6 - 180051392 AGTAGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87937527 6 - 181584905 AGTAGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1160446 6 - 8785636 AGTAGT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1628658 6 + 27333823 AGTAGT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1898756 6 - 91010382 AGTAGT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2009798 6 + 5179401 AGTAGT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7715854 6 - 21726897 AGTAGT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112536393 6 + 204313951 AGTAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44982091 6 + 71252344 AGTAGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 345788 6 - 1393929 AGTAGT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1423003 6 - 15889662 AGTAGT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84833892 6 + 108143057 GATAGT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 604156 6 - 10520994 GATAGT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1304227 6 - 29863360 AACAGT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14320186 5 + 91889043 AGTAG- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1240556 6 - 11655695 AGTAGT i dasNov3.JH570378 I 442 C 0 e mm10.chr13 76462123 16 + 120421639 I a score=2384101.000000 s hg38.chr5_GL383530v1_alt 38083 136 + 101241 TTCTTAGTAATTCTCT-GGAAAGGTAGGGGATGACTTTTCCAGCTGTAGTTTCTTGGACCAAAGCCCAAGCTTCCTATGGATGTATCATAGCAAGAATTCCTGGCAACATAACAGTGTCTCC-AATTCTGCCAGCACA s panTro5.chr5 20266834 136 + 181907262 TTCTTAGTAATTCTCT-GCAAAGGTAGGGGATGACTTTTCCAGCTCTAGTTTCTTGGACCAAAGCCCAAGCTTCCTATGGATGTATCATAGCAAGAATTCCTGGCAACATAACAGTGTCTCC-AATTCTGCCAGCACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20283190 136 + 183735486 TTCTTAGTAATTCTCT-GCAAAGGTAGGGGATGACTTTTCCAGCTCTAGTTTCTTGGACCAAAGCCCAAGCTTCCTATGGATGTATCATAGCAAGAATTCCTGGCAACATAACAGTGTCTCC-AATTCTGCCAGCACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4769980 136 - 13748885 TTCTTAGTAATTCTCT-GGAAAGGTAGGGGATGACTTTTCCAGCTCTAGTTTCTTGGACCAAAGCCCAAGCTTCCTATGGATGTATCATAGCAAGAATTCCTGGCAACATAACAGTGTCTCC-AATTCTGCCAGCACA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53806728 137 - 163208435 TTCTTAGTAATTCTCTGGGAAAGGTAGGGGATGACTTTTCCAGCTCTAGTTCCTTGGACCAAAGCCCAAGCTTCCTATGGATGTATCATAGCAAAAATTCCTGGCAACATAACAGTGTCTCC-AATTCTGCCAGCACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87833113 136 - 180051392 TTCTTAGTAATTCTCT-GGAAACGTAGGGGATGACTTTTCCAGCTTTAGTTCCTTGGACCAAAGCCCAAGCTTCCTATGTATGTATCATAGCAAGGATTCCTGGCAACGTAACAGTGTCTCC-AATTCTGCCAGCACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87937533 136 - 181584905 TTCTTAGTAATTCTCT-GGAAACGTAGGGGATGACTTTTCCAGCTTTAGTTCCTTGGACCAAAGCCCAAGCTTCCTATGTATGTATCATAGCAAGAATTCCTGGCAACGTAACAGTGTCTCC-AATTCTGCCAGCACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1160452 136 - 8785636 TTCTTAGTAATTCTCT-GGAAACGTAGGGGATGACTTTTCCAGCTTTAGTTCCTTGGACCAAAGCCCAAGCTTCCTATGTATGTATCATAGCAAGAATTCCTGGCAATGTAACAGTGTCTCC-AATTCTGCCAGCACA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1628664 136 + 27333823 TTCTTAGTAATTCTCT-GGAAACGTAGGGGATGACTTTTCCAGCTTTAGTTCCTTGGACCAAAGCCCAAGCTTCCTATGTATGTATCATAGCAAGAATTCCTGGCAACGTAACAGTGTCTCC-AATTCTGCCAGCACA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1898762 136 - 91010382 TTCTTAGTAATTCTCT-GGAAACGTAGGGGATGACTTTTCCAGCTTTAGTTCCTTGGACCAAAGCCCAAGCTTCCTATGTATGTATCATAGCAAGAATTCCTGGCAATGTAACAGTGTCTCC-AATTCTGCCAGCACA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2009804 136 + 5179401 TTCTTAGTAATTCTCT-GGAAACGTAGGGGATGACTTTTCCAGCTTTAGTTCCTTGGACCAAAGCCCAAGCTTCCTATGTATGTATCATAGCAAGAATTCCTGGCAACGTAACAGTGTCTCC-AATTCTGCCAGCAAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7715860 136 - 21726897 TTCTTAGTAATTCTCT-GGAAACGTAGGGGATGACTTTTCCAGCTTTAGTTCCTTGGACCAAAGCCCAAGCTTCCTATGTATGTATCATAGCAAGAATTCCTGGCAATGTAACAGTGTCTCC-AATTCTGCCAGCACA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112536399 136 + 204313951 TTCTTAGTAATTCTCT-GGAAAGGTAGGGGATGACTTTTCCAGTTCTGGTTCCTTGGACCAAAGCCCAAGCTTCCTATGGATGAATCATAGCAAGAATTCCTGGCAACATAACAGTGTCTCC-AGTTCTGCCAGCACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44982097 136 + 71252344 TTCTTAGTAATTCTCT-AGAAAGGTAGGGGATGACTTTTCCAGTTCTGGTTCCTTGGACCAAAGCCCAAGCTTCCTATGGATGTATCATAGCAAGAATTCCTGGCAACATAACAGTGTCTCC-AGTTCTGCCAGCACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 345794 136 - 1393929 TTCTTAGTAATTCTCT-GGAAAGGTAGGGAATGACTTTTCCAGTTCTGGTTCCTTGGACCAAAGCCCAAGCTTCCTATGGATGTATCATAGCAAGAATTCCTGGCAACATGACAGTGTCTCC-AGTTCTGCCAGCACA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1423009 136 - 15889662 TTCTTAGTAATTCTCT-GGAAAGGTAGGGGATGACTTTTCCAGTTCTGGTTCCTTGGACCAAAGCCCAAGCTTCCTATGGATGTATCATAGCAAGAATTCCTGGCAACATAACAGTGTCTCC-AGTTCTTCCAGCACA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84833898 136 + 108143057 TCCTTGGTAATTCTCT-GGAAAGGCAGGGGCTGACTTTTCCAGCTCTAGCTCCTTGGATCAAAGCCCAGGCTTCCTATGGATGTATAATAGCAAGAGTTCCTGGCAACATAGCAACATCTAC-AATTCTGCCAGCACA i micMur3.chr12 C 0 I 238 s proCoq1.NW_012147189v1 604162 136 - 10520994 TTCTTAGTAATTCTCT-GGAAAGGCAGGGGCTGACTTTTCCAGCTCTAGCTCCTTGGATCAAAGCCCAGGCTTCCTATGGATGTGTAATAGCAAGAGTTCCTGGCAACACAGCAATATCTAC-AATTCTGCCAGCACA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1304233 134 - 29863360 GCCTTAGCAATTCTCT-GGAAATACAGGGACTGACCTTTCCAGCTCTAGCTCCTTGGATCAAAGGCCAGGCTTCCTGTGGATGCATTGTAGCAAGAATTCCTGGCAGCATGGCTGTATCTGC-AGCTCTGCTGGCA-- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76462139 132 + 120421639 TCCTAAATAATTCTCT-GGAAAGGCAGATGGAGATTTTTCCA--TCCAGTTCCTTGGATCAAAGCTCAGGCTTCC-ATGGATGCATCATAGCAAGAATTCCTGGTGATAT--TAGTAGCTCCTAGTTGTGCCAGAACA i mm10.chr13 I 16 C 0 s canFam3.chr3 14320191 136 + 91889043 TTCTTAGTAATTCTCT-GGAAAGGCAAGGGATGATTTTCCCAGCACTAGTTCTCTGGACTAAAGCCCAGGCTTCCTATGGACATGCCATAGCAAGAATTCCTGGCAACGTAGCGGGATCTCC-AATTATGCCAGCATA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1240562 130 - 11655695 CTCTCAATAATTTTTT-AGAAAGTCAAGGAATAACTTTCCCAGCTCTAGTTTCTTGGAGTAAAGCCTGGGCTTCCTATGGGCATAACATAACAA---TTTCTGGCACCATAGCAGTATCTCC-AGTTATGCCAGC--- i dasNov3.JH570378 C 0 C 0 a score=2217480.000000 s hg38.chr5_GL383530v1_alt 38219 169 + 101241 AGCTTGCTTACTGAGTTATCTGTAAATAA------CA-TGACACAAAGGCATTT---CCAAAGTCAAGACTGTTT-TTAGGTAAGATTTAGTGTATAT---TTTTATTCACTGGAAAACGAAATGCTATTTATTATA---------------------GTCCCTCTTAGAGTACCATGA-A-GAATGGAT--ATAACAAATGCCAAAG s panTro5.chr5 20266970 169 + 181907262 AGCTCGCTTACTGAGTTATCTATAAATAA------CA-TGACACAAGGGCATTT---CCAAAGTCAAGACTGTTT-TTAGGTAAGATTTAGTGTATAT---TTTTATTCACTGGAAAACGAAATGCTATTTATTATA---------------------GTCCCTCTTAGAGTACTATGA-A-GAATGGAT--ATAACAAATGCCAAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20283326 169 + 183735486 AGCTTGCTTACTGAGTTATCTATAAATAA------CA-TGACACAAGGGCATTT---CCAAAGTCAAGACTGTTT-TTAGATAAGATTTAGTGTATAT---TTTTATTCACTGGAAAACGAAATGCTATTTATTATA---------------------GTCCCTCTTAGAGTACTATGA-A-GAATGGAT--ATAACAAATGCCAAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4770116 169 - 13748885 AGCTTGCTTACTGAGTTATCTATAAATAA------CA-TGACACAAGGGCATTT---CCAAAGTCAAGACTGTTT-TTAGGTAAGATTTAGTGTATAT---TTTTATTCACTGGAAAACAAAATGCTATTTATTATA---------------------GTCCCTCTTAGAGTACCATGA-A-GAATGGAT--ATAACAAATGCCAAAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53806865 169 - 163208435 AGCTTGCTTACTGAGTTATCTATAAATAA------CA-TGACACAAGGGCATTT---CCAAAGTCAAGACTGTTT-TTAGGTAAGATTTAGTGTATAT---TTTTATTCATTGGAAAATGAAATGCTATTTATTATA---------------------GTCCCTCTTAGAGTACCATGA-A-GAATGGAT--ATAACAAATGCCAAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87833249 175 - 180051392 AGCTTGCTTACTGAGTTATCTATAAATAGGATGGTCA-TGACACAAGGGCATTT---CCAAAGTCGGGACTGTTT-TTAGGTAACATTTAGTGTATAT---TTTTATTCATTGGAAAAGGCAATGCTATTTATTATA---------------------CTCCCTCTTAGAGTACCATGA-A-GAATGGAT--ATAACAAATGCCAAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87937669 175 - 181584905 AGCTTGCTTACTGAGTTATCTATAAATAGGATGGTCA-TGACACAAGGGCATTT---CCAAAGTCGGGACTGTTT-TTAGGTAACATTTAGTGTATAT---TTTTATTCATTGGAAAAGGCAATGCTATTTATTATA---------------------CTCCCTCTTAGAGTACCATGA-A-GAATGGAT--ATAACAAATGCCAAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1160588 175 - 8785636 AGCTTGCTTACTGAGTTATCTATAAATAGGATGGTCA-TGACACAAGGGCATTT---CCAAAGTCGGGACTGTTT-TTAGGTAACATTTAGTGTATAT---TTTTATTCATTGGAAAAGGCAATGCTATTTATTATA---------------------CTCCCTCTTAGAGTACCATGA-A-GAATGGAT--ATAACAAATGCCAAAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1628800 175 + 27333823 AGCTTGCTTACTGAGTTATCTATAAATAGGATGGTCA-TGACACAAGGGCATTT---CCAAAGTCGGGACTGTTT-TTAGGTAACATTTAGTGTATAT---TTTTATTCATTGGAAAAGGCAATGCTATTTATTATA---------------------CTCCCTCTTAGAGTACCATGA-A-GAATGGAT--ATAACAAATGCCAAAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1898898 175 - 91010382 AGCTTGCTTACTGAGTTATCTATAAATAGGATGGTCA-TGACACAAGGGCATTT---CCAAAGTCGGGACTGTTT-TTAGGTAACATTTAGTGTATAT---TTTTATTCTTTGGAAAAGGCAGTGCTATTTATTATA---------------------GTCCCTCTTAGAGTTCCATGA-A-GAATGGAT--ATAACAAATGCCAAAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2009940 175 + 5179401 AGCTTGCTTACTGAGTTATCTATAAATAGGATGGTCA-TGACACAAGGGCATTT---CCAAAGTCGGGACTGTTT-TTAGGTAACATTTAGTGTATAT---TTTTATTCATTGGAAAAGGCAATGCTTTTTATTATA---------------------CTCCCTCTTAGAGTACCATGA-A-GAATGGAT--ATAACAAATGCCAAAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7715996 175 - 21726897 AGCTTGCTTGCTGAGTTATCTATAAATAGGATGGTCA-TGACACAAGGGCATTT---CCAAAGTCAGGACTGTTT-TTAGGTAACATTTAGTATATAT---TTTTATTCATTGGAAAAGGCAATGCTATTTATTATA---------------------GTTCCTCTTAGAGTATCATGA-A-GAATGGAT--ATAACAAATGCCAAAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112536535 174 + 204313951 AGCTTGCTTACTAAGTTATCTATAAATAGGATCGTCA-TGGCACAAGGGCATTT---CCAAAGTCAAGATTGTTT-TTAGGTAACATTTAGTGTATAT---TTTTACTCATTGGAAAAGGAAATGCTATTTATTATA---------------------GTCCCTCTTAGTGTACCATGA-A-GAATAGA---ATAACAAATGCCAAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44982233 163 + 71252344 AGCTTGCTTACTGAGTTATCTATAAATAGGATGGTCA-TGACACAAGCACATTT---CCAAAGTCAAGATTGTT------------TTTAGCATATAT---TTTTACTCATTGGAAAAGGAAATGCTATTTATTATA---------------------GTCCCTCTTAGTGTACCATGA-A-TAATGGA---ATAACAAATGCTAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 345930 174 - 1393929 AGCTTGCTTGCTGAGTTATCTATAAATAGGATGGTCA-TGACACAAGGGCATTT---CCAAAGTCAAGATTGTTT-TTAGGTAACATTTAGTGTATAT---TTTTACTCATTGGAAAAGGAAATCCTATTTATTTTA---------------------GTCCCTTTTAGTGTACCATGA-A-GAATGGA---ATAACAAATGCCAAAG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1423145 174 - 15889662 AGCTTGCTTACTGAGTTATCTATAAATAGGATGGTCA-TGACACAAGGGCGTTT---CCAAAGTCAAGATTATTT-TTAGGTAACATTTAGCATATAT---TTTTACTCATTGGAAAAGGAAATGATATTTATTATA---------------------GTCCCTCTTAGTGTACCATGA-A-GAATGGA---ATAACAAATGCCAAAG i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 604298 165 - 10520994 ----CGCGTACAGAGTTATCTATAAATAGGAAGGTCA-TGACAC-AGGGCATTT---ACAAAGTCAAGATTATTTTTTAGGTAATATTTAGTATGTAT---TTTCCTTCATAGGAAAAGGAAACCCTATTTGTCATA---------------------GGCTCTCTTAGAGTACCATAA-A-------AA--AATGTTTACAACAAAT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1304367 164 - 29863360 --CCCGTGTGCAGAGTTGTCTATAAACAGGAAGGTCA-TGATACAAGAACATTC---ACCAAGTCAAGACTATTTACCAGGTAATATTTAGTATGTAA---TTTTCTTCATTGGAAAAGGAAATCCTTTCTCTCAAA-------------------------CTTTCAGAGTACCATAA-A-------AT--ATGATAGATATCAAAG i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76462271 166 + 120421639 ------CTTTAAGAGTCATCTGT-AGTAGGAAGGGCA-TTGCCACAGGGTATTT---ATAGTCTTAA-ACAACCT-TTATATAATGCTTCATATAGTT---CTTTCTTTACCAGAAAAGGAAA--CTATTTATCGTA---------------------GTCTCTGTCAGTTTACCATGACA-AAGTGTTT--ATAACAAATGCCACAG i mm10.chr13 C 0 I 235 s canFam3.chr3 14320327 173 + 91889043 ----CACTTACAGAGACATCTATGAATAGAAAGGACATTGACAC-AGGGCATTG---ACAAAGTCATGACTATTT-TTAGATAACATTTAGTGTATAC---ATTTTCTCACTGGAAAAGGAGTCTCTATTTACCATA---------------------GGCTTCCTTAGACTACTAGGA-A-AAACATGTTAACAACAAATGCCAAAC i canFam3.chr3 C 0 I 4 s dasNov3.JH570378 1240692 200 - 11655695 --CACACTTACAGAGTTATCTATGAATAGGAAGGACA-CAA-ACAAGGGCATTGACATCAAAGTCACAAGTAATT-TGAAATAACATTTAGTATGTATTTATTTTTCTCATTGGAAAAGGTAAACCTATTCATCATAGAAACTTCAGAAAATTCCATAGGCTCTCTTAGACTACCATGA-AAAAATGTTT--ATAATAAAGGCCAAAG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84834034 238 + 108143057 I a score=1023933.000000 s hg38.chr5_GL383530v1_alt 38388 77 + 101241 AT--AAGAGTTAATTTATTTATAATATGTTTAACAAATATTTCAACATCAAAGAAAGTAAA-TTTTAGTTTTTCAAATAA s panTro5.chr5 20267139 77 + 181907262 AT--AAGAGTTAATTTATTTATAATATGTTTAACAAATATTTCAACATCAAAGAAAGTAAA-TTTTAGTTTTTCAAATAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20283495 77 + 183735486 AT--AAGAGTTAATTTATTTATAATATGTTTAACAAATATTTCAACATCAAAGAAAGTAAA-TTTTAGTTTTTCAAATAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4770285 77 - 13748885 AT--AAGAGTTAATTTATTTATAATATGTTTAACAAATATTTCAACATCAAAGAAAGTAAA-TTTTAGTTTTTCAAATAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53807034 78 - 163208435 AT--AAGAATTAATTTATTTATAGTATGTTTAACAAATATTTCAACATCAAAGATAGTAAACTTTTAGTTTTTCAAATAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87833424 80 - 180051392 ATAAAAGAGTTAATTTATTTATAATATGTTTAACAAATATTTCAACATCAAAGAAAGTAAACTTTTAGTTTTTCAAATAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87937844 80 - 181584905 ATAAAAGAGTTAATTTATTTATAATATGTTTAACAAATATTTCAACATCAAAGAAAGTAAACTTTTAGTTTTTCAAATAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1160763 80 - 8785636 ATAAAAGAGTTAATTTATTTATAATATGTTTAACAAATATTTCAACATCAAAGAAAGTAAACTTTTAGTTTTTCAAATAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1628975 80 + 27333823 ATAAAAGAGTTAATTTATTTATAATATGTTTAACAAATATTTCAACATCAAAGAAAGTAAACTTTTAGTTTTTCAAATAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1899073 80 - 91010382 ATAAAAGAGTTAATTTATGTATAATATGTTTAACAAACATTTAAACATCAAAGAAAGTAAACTTTTAGTTTTTCAAATAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2010115 80 + 5179401 ATAAAAGAGTTAATTTATTTATAATATGTTTAACAAATATTTCAACATCAAAGAAAGTAAACTTTTAGTTTTTCAAATAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7716171 80 - 21726897 ATAAAAGAGTTAATTTATGTATAATATGTTTAACAAATATTTCAACATCAAAGAAAGTAAACTTTTAGTTTTTCAAATAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112536709 80 + 204313951 ATAAAAGAGTTAATTTATTTATAATATGTTTAACAAACATTTCAACATCAAAGAAAGCAAACTTTTAGTTTTTCAAATAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44982396 80 + 71252344 ATAAAAGAGTTAATTTATTTATAATATGTTTAACAAACATTTCAACATTAAAGAAAGCAAACTTTTAGTTTTTCAAATAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 346104 80 - 1393929 ATAAAAGAGTTAATTTATTTATAATATGTTTAACAAACATTTCAACATCAAAGAAAGCAAACTTTTAGTTTTTCAAATAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1423319 80 - 15889662 ATAAAAGAGTTAATTTATTTATAATGTGTTTAACAAACATTTCAACATCAAAGAAAGCAAATTTTTAGTTTTTCAAATAA i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 604463 80 - 10520994 GTCAAAGAGTTAATTTATTTATAATGTGTTCCACAAACATATCAAAATCAAAGAAGGTAAACTATTGGTTTATGAAATCC i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1304531 78 - 29863360 ATAAAAGAGTTAATTCATTTATGATGTATTTCACAAGC--ATCAAAATCAAAAAAGACAAACTATTGGTTTATCAAACCA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14320504 73 + 91889043 ATCAAAGAGTTAACCTATTGGTGACTTGTTTC-----CATTC--AGATCAAAGAAGGTAGATTCTTGGTTTATCAAATTG i canFam3.chr3 I 4 I 33 s dasNov3.JH570378 1240892 73 - 11655695 ATCAAAGAGTTAATTTAATTGTAATGCCTTTTA-------GTTAAAAACAAAGAAAGTAAACTCTTGATTTATCAAATCA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84834034 238 + 108143057 I e mm10.chr13 76462437 235 + 120421639 I a score=848120.000000 s hg38.chr5_GL383530v1_alt 38465 64 + 101241 AG------AAATATCTTAA--------------------TTTCTGTTCATAGACATTAAGCAAATATTGAATTGTTTCAA-AATGTTATCC s panTro5.chr5 20267216 64 + 181907262 AG------AAATATCTTAA--------------------TTTCTGTTCATAGACATTAAGCAAATATTGAATTGTTTCAA-AATGTTATCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20283572 64 + 183735486 AG------AAATATCTTAA--------------------TTTCTGTTCATAGACATTAAGCAAATATTGAATTGTTTCAA-AATGTTATCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4770362 64 - 13748885 AG------AAATATCTTAA--------------------TTTCTGTTCATAGACATTAAGCAAATATTGAATTGTTTCAA-AATGTTATCC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53807112 64 - 163208435 AG------ACATATCTTAA--------------------TTTCTGTTTATAGACATTAAGCAAATATTGAATTGTTTCAA-AATGTTATCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87833504 64 - 180051392 AG------AAATATCTTAA--------------------TTGCTGTTCACAGATGTCAAGCAAATATTGAATTGTTTCAA-AATGTTATCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87937924 64 - 181584905 AG------AAATATCTTAA--------------------TTGCTGTTCACAGATGTCAAGCAAATATTGAATTGTTTCAA-AATGTTATCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1160843 64 - 8785636 AG------AAATATCTTAA--------------------TTGCTGTTCACAGATGTCAAGCAAATATTGAATTGTTTCAA-AATGTTATCC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1629055 64 + 27333823 AG------AAATATCTTAA--------------------TTGCTGTTCACAGATATCAAGCAAATATTGAATTGTTTCAA-AATGTTATCC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1899153 64 - 91010382 AG------AAATATCTTAA--------------------TTGCTGTTCACAGATGTCAAGCAAATATTGAATTGTTTCAA-AATGTTATCC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2010195 64 + 5179401 AG------AAATATCTTAA--------------------TTGCTGTTCACAGATGTCAAGCAAATATTGAATTGTTTCAA-AATGTTATCC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7716251 64 - 21726897 AG------AAATGTCTTAA--------------------TTTCTGTTCACAGATGTTAAGCAAATATTGAATTGTTTCAA-AATGTTATCC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112536789 66 + 204313951 AG------AAAAATCTTAAA------------------ATTCGTGTTCATAAACATTAAGCAAATATCGAATTATTTCAA-AATGTTATCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44982476 66 + 71252344 AG------AAAAATCTTAAA------------------ATTTGTGTTCATAAACATTAAGCAAATATTGAATTCTTTCAA-AATATTATCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 346184 61 - 1393929 AG------AAAAATCT-----------------------TTTGTGTTCATCAACATTAAGCAATTATTGAATTGTTTCAA-AATGTTATCC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1423399 66 - 15889662 AG------AAAAATCTTAAA------------------ATTTGTGTTCATAAACATTAAGCAAATATTGAATTGTTTCAA-AATGTTATCC i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84834272 64 + 108143057 AG------AAATATATTAA--------------------TTTGCGTTCATAGACATTAAGCAAATATGGAATTGTTTCAA-ACTATTATCC i micMur3.chr12 I 238 I 367 s proCoq1.NW_012147189v1 604543 64 - 10520994 AG------AAATATATGAA--------------------TTTGTGTTCATAGACATTAAGCAAACATGGAATTGTTTCAA-AATGTTATCT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1304609 48 - 29863360 GG------AAATACATTAAT-------------------TTTGTGTTTATGGACATTAAG-----------------CAA-AATGTCATTT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14320610 91 + 91889043 agtatattaaatatattaatCTGAAAGTTATTGGAAATGTTTAATTTCAAAGACATCAAGAAAATATTGAATTGTTCCAATAATGTTATCC i canFam3.chr3 I 33 C 0 s dasNov3.JH570378 1240965 65 - 11655695 AG------ACAGATATTAA--------------------TTTCTGTTCATAGACATCAAGCAAAAATTGCATTGTTTAAAAAATATTATCC i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76462437 235 + 120421639 I a score=699139.000000 s hg38.chr5_GL383530v1_alt 38529 60 + 101241 CTTTAGATAGAATAAAGGTTTTCTTGTTTGTATA------------TTTTTGT-TTTGAATTCTTTAGGTATT- s panTro5.chr5 20267280 60 + 181907262 CTTTAGATAGAATAAAGGTTTTCTTGTTTGTATA------------TTTTTGT-TTTGAATTCTTTAGGTATT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20283636 60 + 183735486 CTTTAGATAGAATAAAGGTTTTCTTGTTTGTATA------------TTTTTGT-TTTGAATTCTTTAGGTATT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4770426 60 - 13748885 CTTTAGATAGAATAAAGGTTTTCTTGTTTGTATA------------TTTTTGT-TTTGAATTCTTTAGGTATT- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53807176 61 - 163208435 CTTTAGATAGAATAAAGGTTTTCTTGTTTGTATA-T----------TTTTTGT-TTTGAATTCTTTAGGTATT- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87833568 61 - 180051392 CTTTAGATAGAATAAAGGTTTTCTCATTTGTATA-T----------TTTTTGT-TTTGAATTCTTTAGGTATT- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87937988 61 - 181584905 CTTTAGATAGAATAAAGGTTTTCTCATTTGTATA-T----------TTTTTGT-TTTGAATTCTTTAGGTATT- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1160907 62 - 8785636 CTTTAGATAGAATAAAGGTTTTCTCATTTGTATATT----------TTTTTGT-TTTGAATTCTTTAGGTATT- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1629119 61 + 27333823 CTTTAGATAGAATAAAGGTTTTCTCATTTGTATA-T----------TTTTTGT-TTTGAATTCTTTAGGTATT- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1899217 61 - 91010382 CTTTAGATAGAATAAAGGTTTTCTCATTTGTGTA-T----------TTTTTGT-TTTGAATTCTTTAGGTATT- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2010259 61 + 5179401 CTTTAGATAGAATAAAGGTTTTCTCATTTGTATA-T----------TTTTTGT-TTTGAATTCTTTAGGTATT- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7716315 61 - 21726897 CTTTAGATAGAATAAAGGTTTTCTCATTTGTATG-T----------TTTTTGT-TTTGAATTCTTTAGGTATT- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112536855 68 + 204313951 CTTTAGATAGAATAAAGATTTTTGGGTTTATGTA-TTTTTT---TGTTTTTGT-TTTGAATTCTTTAGGTATT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44982542 65 + 71252344 CTTTAGATAGAATAAAGGTTTTCGTGTTTGTCTA-TTTTT------TTTTTGT-TTTGAATTCTTTAGGTATT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 346245 71 - 1393929 CTTTAGATAGAATAAAGGtttttgtgtttgtgta-ttttttttgtttttttgt-tttGAATCCTTTAGGTATT- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1423465 62 - 15889662 CTTTAGATAGAATAAATGTTTTTGTGTTTGTGTA-TT---------TTTTTGT-TTTGAATTCTTTAGGTATT- i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 604607 63 - 10520994 CTTCAGGTAATATAAAGGTTTT-TTGTTTGTGTG-TTG--------TTTTTGTCTTTTAACTTGTTAGATATT- i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1304657 57 - 29863360 CTTCAG-----ATAAAGACTTT-TTATTTGTGTA-GC---------TTTTTGTCTTTTAATTTCTTAGGCATT- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14320701 60 + 91889043 CTTCAGGTAGTGTAAAAGTTTTTGTGCTTTT-TG-T----------TTTTGCT-TTTTAATTCTTTAGGTAtt- i canFam3.chr3 C 0 I 1135 s dasNov3.JH570378 1241030 52 - 11655695 TTTCAGGTAGTATAAAGATTTT----------TG-T----------TTATGTT-TTTAAAATTTTTTGGTATCT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84834336 367 + 108143057 I e mm10.chr13 76462437 235 + 120421639 I a score=508541.000000 s hg38.chr5_GL383530v1_alt 38589 41 + 101241 AAAAGTGTGTAGAGGCTAATGTTAGTCAAAGTGTCTGTGTT s panTro5.chr5 20267340 41 + 181907262 AAAAGTGTGTAGAGGCTCATGTTAGTCAAAGTGTCTGTGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20283696 41 + 183735486 AAAAGTGTGTAGAGGCTAATGTTAGTCAAAGTGTCTGTGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4770486 41 - 13748885 AAAAGTGTGTAGAGGCTAATGTTAGTCAAAGTGTCTGTGTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53807237 41 - 163208435 AAAAGTGTGTACAGGCTAATGTTAGTCAAAGTGTCTGCGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87833629 41 - 180051392 AAAGGTGTGTACAGGCTAATGTTAGTCAAAGTGTCTGTGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87938049 41 - 181584905 AAAGGTGTGTACAGGCTAATGTTAGTCAAAGTGTCTGTGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1160969 41 - 8785636 AAAGGTGTGTACAGGCTAATGTTAGTCAAAGTGTCTGTGTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1629180 41 + 27333823 AAAGGTGTGTACAGGCTAATGTTAGTCAAAGTGTCTGTGTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1899278 41 - 91010382 AAAGGTGTGTACTGGCTAATGTTAGTCAAAGTGTCTGTGTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2010320 41 + 5179401 AAAGGTGTGTACAGGCTAATGTTAGTCAAAGTGTCTGTGTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7716376 41 - 21726897 AAAGGTGTGTACAGGCTAATGTTAGTCAAAGTGTCTGTGTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112536923 41 + 204313951 AATAGTGTATAGAGGCTAATGTTAGTCAAAGGGTCTATGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44982607 41 + 71252344 AAAAGTGTGTAGAGGCTAATGTTAGTCAAAGGGTCTATGTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 346316 41 - 1393929 AAAAGTGTGTAGAGGCTAATGTTAGTCAAAGGGTCTATGTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1423527 41 - 15889662 AAAAGTGTGTAGAGGCTAATGTTAGTCAAAGGGTCTATGTT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 604670 36 - 10520994 -AAAGTGTGCACAGGCTAATGTTAGTTAAAGTAGTAG---- i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1304714 37 - 29863360 GAAAGTGTGCATAGGCTAATGTTAGTTAAAGTAGTAG---- i otoGar3.GL873536 C 0 C 0 s dasNov3.JH570378 1241082 41 - 11655695 AAAAATGTACACAGGCTAATGTTAATCAAGGTATCAGAGTT i dasNov3.JH570378 C 0 I 1782 e canFam3.chr3 14320761 1135 + 91889043 I e micMur3.chr12 84834336 367 + 108143057 I e mm10.chr13 76462437 235 + 120421639 I a score=245165.000000 s hg38.chr5_GL383530v1_alt 38630 24 + 101241 TAGAA-----CTCCCTCCCACAAA--------------CTAGA s panTro5.chr5 20267381 24 + 181907262 TAGAA-----CTCCCTCCCACAAA--------------CTAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20283737 24 + 183735486 TAGAA-----CTCCCTCCCACAAA--------------CTAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4770527 24 - 13748885 TAGAA-----CTCCCTCCCACAAA--------------CTAGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53807278 24 - 163208435 TAGAA-----CTCCCTCCCACAAA--------------CTAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87833670 24 - 180051392 TAGAA-----CTCCCTCCCACAAA--------------CTAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87938090 24 - 181584905 TAGAA-----CTCCCTCCCACAAA--------------CTAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1161010 24 - 8785636 TAGAA-----CTCCCTCCCACAAA--------------CTAGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1629221 24 + 27333823 TAGAA-----CTCCCTCCCACAAA--------------TTAGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1899319 24 - 91010382 TAGAA-----CTCCCTCCCACAAA--------------CTAGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2010361 24 + 5179401 TAGAA-----CTCCCTCCCACAAA--------------CTAGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7716417 24 - 21726897 TGGAA-----CTCCCTCCCACAAA--------------CTAGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112536964 23 + 204313951 TAGAA-----ATCTCTCCCG-AAA--------------CTAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44982648 24 + 71252344 TAGAA-----ATCTCTCCCACAAA--------------CTAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 346357 24 - 1393929 TAGAA-----ATCTCCCCCACAAA--------------CGAGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1423568 24 - 15889662 TAGAA-----ATCTCTCCCACAAA--------------CTAGA i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 604706 38 - 10520994 TAGAA-----CACACCCCCTCAaaaaaaccccagtggcctaaa i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1304751 43 - 29863360 TAGAACCTCCCCCTCCCCCCAAAAAGAACCCCAGTGGCTTAAA i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14320761 1135 + 91889043 I e micMur3.chr12 84834336 367 + 108143057 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I a score=2336652.000000 s hg38.chr5_GL383530v1_alt 38654 203 + 101241 TATTTTATAAG---------TTTTGTTTACCTCCCTTAACTAGAGTTTGAGAGGTAGGTGGTTGCTGGCTCAAAGATTTCAGAGTTTAGTTCTTCAAATTTTTTTT-ACCCTATTCTTTGTGGCCTTCTTATGGTTACAAGATAGGTGCTCCATCTCTAACATTATATCCATATTTCA-GGCAGAAAAAAGGAGAG-AAAAAAAG--CAGAAAGGCT s panTro5.chr5 20267405 203 + 181907262 TATTTTGTAAG---------TTTTGTTTACCTCCCTTAACTAGAGTTTGAGAGGTAGGTGGTTGCTGGCTCAAAGATTTCAGAGTTTAGTTCTTGCAATTTTTTTT-ACCCTATTCTTTGTGGCCTTCTTATGGTTACAAGATAGGTGCTCCATCTCTAACATTATATCCATATTTCA-GGCAGAAAAAAGGAGAG-AAAAAAAG--CAGAAAGGCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20283761 203 + 183735486 TATTTTATAAG---------TTTTGTTTACCTCCCTTAACTAGAGTTTGAGAGGTAGGTGGTTGCTGGCTCAAAGATTTCAGAGTTTAGTTCTTGCAATTTTTTTT-ACCCTATTCTTTGTGGCCTTCTTATGGTTACAAGATAGGTGCTCCATCTCTAACATTATATCCATATTTCA-GGCAAAAAAAAGGAGAG-AAAAAAAG--CAGAAAGGCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4770551 205 - 13748885 TATTTTATAAG---------TTTTGTTTACCTCCCTTAACTAGAGGTTGAGAGGTAGGTGGTTGCTGCCTCAAAGATTTCAGAGTTTAGTTCCTGCAATTTTTTTTAACCCTATTCTTTGTGGCCTTCTTATGGTTACAAGATAGGTGCTCCATCTCTAACATTATATCCATATTTCA-GGCAGAAAAAAGGAGAGAAAAAAAAG--CAGAAAGGCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53807302 204 - 163208435 TATTTTGTAAG---------TTTTGTTTACCTCCCTTAACTAGAGATTGAGAGGTAGGTGGTTGCTGGCTTAAAGATTTCAGAGTTTAGTTCCTGCAATTTTTTCC--CCCTATTCTTTGTGGCCTTCTTATGGTTACAAGATAGGTGCTCCATCTCTAACATTACATCCATATTTCATGGAGaaaaaaaggagaggaaaaaaag--cagaaaggct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87833694 203 - 180051392 TATTTTATAAG---------TTTTGTTTACCTCCCTTAACTAGAGGTTGAGAGGTAGGTGGTTGCTGGCTCAAAGATTTCAGAGTTTAGTCCTTGCAATTTTTTTT-CCCCTATTCTTTGTGGCCTTCTTATGGTTACAAGATAGGTGCTCCATCTCTAACATTACATTCATATTTCA-GGTAGAAAAAAAGGAGA-GAAAAAAG--CAGAAAGGCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87938114 203 - 181584905 TATTTTATAAG---------TTTTGTTTACCTCCCTTAACTAGAGGTTGAGAGGTAGGTGGTTGCTGGCTCAAAGATTTCAGAGTTTAGTCCTTGCAATTTTTTTT-CCCCTATTCTTTGTGGCCTTCTTATGGTTACAAGATAGGTGCTCCATCTCTAACATTACATTCATATTTCA-GGTAGAAAAAAAGGAGA-GAAAAAAG--CAGAAAGGCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1161034 203 - 8785636 TATTTTATAAG---------TTTTGTTTACCTCCCTTAACTAGAGGTTGAGAGGTAGGTGGTTGCTGGCTCAAAGATTTCAGAGTTTAGTCCTTGCAATTTTTTTT-CCCCTATTCTTTGTGGCCTTCTTATGGTTACAAGATAGGTGCTCCATCTCTAACATTACATTCATATTTCA-GGTAGAAAAAAAGGAGA-GAAAAAAG--CAGAAAGGCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1629245 203 + 27333823 TATTTTATAGG---------TTTTGTTTACCTCCCTTAACTAGAGGTTGAGAGGTAGGTGGTTGCTGGCTCAAAGATTTCAGAGATTAGTCTTTGCAATTTTTTTT-CCCCTATTCTTTGTGGCCTTCTTATGGTTACAAGATAGGTGCTCCATCTCTAACATTACATTCATATTTCA-GGTAGAAAAAAAGGAGA-GAAAAAAG--CAGAAAGGCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1899343 204 - 91010382 TATTTTATAAG---------TTTTGCTCACCTCCCTTAACTAGAGGTTGAGAGGTAGGTGGTTGCTGGCTCAAAGATTTCAGAGTTTAGTCCTTGCAATTTTTTTTCCCCCTATTCTTTGTGGCCTTCTTATGGTTACAAGATAGGTGCTCCATCTCTAACATTACATTCATATTTCA-GGCAGAAAAAAAGGAGA-GAAAAAAG--CAGAAAGGCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2010385 203 + 5179401 TATTTTATAAG---------TTTTGTTTACCTCCCTTAACTAGAGGTTGAGAGGTAGGTGGTTGCTGGCTCAAAGATTTCAGAGTTTAGTCCTTGCAATTTTTTTT-CCCCTATTCTTTGTGGCCTTCTTATGGTTACAAGATAGGTGCTCCATCTCTAACATTACATTCATATTTCA-GGTAGAAAAAAAGGAGA-GAAAAAAG--CAGAAAGGCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7716441 192 - 21726897 TATTTTATAAG---------TTTTGCTTACCTCCCTTAACTAGAGGTTGAGAGGTAGGTGGTTGCTGGCTCAGAGATTTCAGAGTTTAGTCCTTGCAATTTTTTTC-CCCCTATTCTTTGTGGCCTTCTTATGGTTACAAGATAGGTT-----------ACATTACATTCATATTTCA-GGCAGTAAAAAAGGAGA-GAAAAAAG--CAGAAAGGCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112536987 195 + 204313951 TA-----TAAG---------TTTTGTTTACCTCCCTTAACTAGAGGTTGAGAGGTAGGTGATTGCTGGCTCAAAGATTCCAGAGTTTAGTTCCTGCAAATGTTTT--CCCCTACTCTTTGTGGACTTTTTATGGTTGCAAGATAGGGGCTCCATCACTAACATTATATCCATATTTCA-GGCAGAaaaaaaggaga-g-aaaaag--cagaaa-gct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44982672 195 + 71252344 TG-----TAAG---------TTTTGTTTACCTCCCTTAACTAGAGGTTGAGAGGTAGGTAATTGTTGGCTCAAAGATTTCAGAGTTTAGTTCCTGCAAATGTTTC--CCCCTATTCTTTGTGGCCTTTTAATGGTTGCAAGATAGGTGCTCCATCTCTAACATTATATCCATATTTCA-GGCagaaaaaaaggaga-g-aaaaag--cggaaa-gct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 346381 195 - 1393929 TA-----TAAA---------TTTTGTTTACCTTCCTTAACTAGAAGTTGAGAGGTAGGTGATTGCTGGCTCAAAGATTTCAGAGTTTAGTTCCTGCAAATGTTTC--CCCCTATTCTTTGTGGCCTTTTTATGGTTGCAAGATAGGTGCTCCATCTCTAACATTATATCCATATTTCA-GGCAG-AAAAAAGGAGA-G-AAAAAG--CAGAAAGGCT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1423592 194 - 15889662 TA-----TAAG---------TTTTGTTTACCTCCCTTAACTAGATGTTGAGAGGTAGGTGATTGCTGGCTCAAAGATTTCAGAGTTTAGTTCCTGCAAATGTTT---CCCCTATTCTTTGTGGCCTTTCTATGGTTGCAAGATAGGTGCTCCATCTCTAACATTATATCCATATTTCA-GGCAGAAAAAAAGGAGA-G-AAAAAG--CAGAAA-GCT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 604744 205 - 10520994 tatattataag---------ttttatttttctcacttaagtagaagttgagaggtaggtagttgttggctc-aggatttcagagtttaggttttgcaaattctcttttccctttcctttatggtcttcttatggttacaagatagctattccgtcttcaatattgcattcgtatttca-ggcagtaggaaagggag-ggaaaaaaatcagaaaagct i proCoq1.NW_012147189v1 C 0 I 6 s otoGar3.GL873536 1304794 200 - 29863360 TGTTTTATAAGCtttttttttttttttttttttGCTTAACTAGACATTTAGAGGTAGGTGGTTGCTACCTCAAGGATTTTAGAGTTTAGGTCTTCAAAATTCTCTTTCCTCTTTC---------CTTCTAATGGTTACACAATAGCTGTTCCATCTCCAATGTCACATTCATATTT-----CAGTAAAAAAGGGAG-GGAAAGGG--CAGAAAGTCT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14321896 191 + 91889043 TATTatagaaa---------tttcatttttctcaccaaactaaaagctgggaggtaggtagttactggctcaaggattctagagtctaggttctgcaaatttctt--gcccttttcattgtgg---tctcatggttagaagacagctgctccatctctaacatcacatccatattcca-ggcagaaagaatgggag-gaaaaaaa--gT-------- i canFam3.chr3 I 1135 C 0 e micMur3.chr12 84834336 367 + 108143057 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I a score=394367.000000 s hg38.chr5_GL383530v1_alt 38857 77 + 101241 AAAAAGAAAAAAATAACAAGGCTAAAAAAG--CAAAAAATAGCAACAAGGCTAACAAAGA-AAAAAAAGGA-GGAAAATAA s panTro5.chr5 20267608 77 + 181907262 AAAAAGAAAAAAATAACAAGGCTAAAAAAG--AAAAAAATAGCAACAAGGCTAACAAAGA-AAAAAAAGGA-GGAAAATAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20283964 77 + 183735486 AAAAAGAAAAAAATAACAAGGCTAAAAAAG--AAAAAAATAGCAACAAGGCTAACAAAGA-AAAAAAAGGA-GGAAAATAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4770756 75 - 13748885 AAAAAG-AAAAAATAACAAGGCTAAAAAAG---AAAAAATAGCAGCAAGGCTAACAAAGA-AAGAAAAGGA-GGAAAAAAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53807506 75 - 163208435 aaaaag-aaaaaataacaaggctaaaaaag--aaaaaaatagcagcaaggctaacaaaga-aaaaaaagga-ggaaaa-aa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87833897 76 - 180051392 AAAAAG-AAAAAGTAGCAAGGCTAAAAGAG---AAAAAATAGCAGCACGGCTAACAAAAT-AAAAAAAGGAGGGGAAAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87938317 76 - 181584905 AAAAAG-AAAAAGTAGCAAGGCTAAAAGAG---AAAAAATAGCAGCACGGCTAACAAAAT-AAAAAAAGGAGGGGAAAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1161237 76 - 8785636 AAAAAG-AAAAAGTAGCAAGGCTAAAAGAG---AAAAAATAGCAGCACGGCTAACAAAAT-AAAAAAAGGAGGGGAAAAAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1629448 76 + 27333823 AAAAAG-AAAAAGTAGCAAGGCTAAAAGAG---AAAAAATAGCAGCATGGCTAACAAAAT-AAAAAAAGGAGGGGAAAAAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1899547 76 - 91010382 AAAAAG-AAAAAGTAGCAAGGCTAAAAGAG---AAAAAATAGCAGGATGGCTAACAAAAT-AAAAAAAGGAGGGGAAAAAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2010588 76 + 5179401 AAAAAG-AAAAAGTAGCAAGGCTAAAAGAG---AAAAAATAGCAGCACGGCTAACAAAAT-AAAAAAAGGAGGGGAAAAAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7716633 75 - 21726897 AAAAAGAAAAAAATAGCAAGGCTAAAAGAG---AAAAAATAGCAGCACGGCTAACAAAGA-AAAAAAAGGA--GGAAAAAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112537182 46 + 204313951 gaaaag--aaaaatagtaaggctaacaaag---a---------------------------aaaaaacgaa---agaagaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44982867 64 + 71252344 aaaaag--aaaaatagcaaggctaaaaaag---aaaaaagaac---aaggcaaac------aaaaaaggaa---gaaaaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 346576 70 - 1393929 AAAAAG--AAAAATATCAAGGCTAAAAAAG---AAAAAAGAGC---AAGGCAAACAAAGAAAAGAAAAGGA---AGAAAAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1423786 69 - 15889662 AAACAG--AAAAATAGCAAGGCTTAAAAAG---AAAAAAGAGC---ATGGAAAACATAGA-AAGAAAAGGA---AGAAAAA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1304994 6 - 29863360 -----------------CATGCT---------------------------------------------------------- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14322087 36 + 91889043 --------AAAAAAAAAAAAGTAAAAGAAATTCATGAATTAGCA------------------------------------- i canFam3.chr3 C 0 C 0 e micMur3.chr12 84834336 367 + 108143057 I e proCoq1.NW_012147189v1 604949 6 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I a score=42296.000000 s hg38.chr5_GL383530v1_alt 38934 3 + 101241 AGC s panTro5.chr5 20267685 3 + 181907262 AGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20284041 3 + 183735486 AGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4770831 3 - 13748885 AGC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53807581 3 - 163208435 aGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87833973 3 - 180051392 AGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87938393 3 - 181584905 AGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1161313 3 - 8785636 AGC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1629524 3 + 27333823 AGC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1899623 3 - 91010382 AGC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2010664 3 + 5179401 AGC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7716708 3 - 21726897 AGC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112537228 3 + 204313951 agC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44982931 3 + 71252344 aGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 346646 3 - 1393929 AGC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1423855 3 - 15889662 AGC i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 604955 3 - 10520994 agt i proCoq1.NW_012147189v1 I 6 C 0 s otoGar3.GL873536 1305000 3 - 29863360 AGC i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14322123 0 + 91889043 C e micMur3.chr12 84834336 367 + 108143057 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I a score=6996062.000000 s hg38.chr5_GL383530v1_alt 38937 506 + 101241 TGAGTTTGCTCCGTTTTTGAGTAATTGCTCAATCCAATTAAATGTCATTGGCCAGAATTGTATTGTATGGCCTCTCCTCTCTGCCAGACAG-CTGATTATTGTTTTTTACATGATAACATGATGATCTCCCAGCCCCTAAAATGACATTCTCTTATGAAAGAAGACAGAAAGGGAAGGAAATCAGTCTATCAC-------AAAAATCC-ATCTTTATTGCTACCTCTTAAATAATTTTCAAATCTATTCATATTTCTGTATTTCCATTTATATCATGTTTTAACAGACAAGGAATAAG---AAATCAGTTAATTGAATTgatcagggagggtctcagggaggagatgagacttgaaaatgggttttgaggtttagctattgcttggagaagagaggaaggtaggaattccaagcaa-aagggaagaaaggataaaagctccaagatggacgtgatcatggtacatacatatgagtgtgattatggttatgggcaaagagacaattaggagataagacTT s panTro5.chr5 20267688 506 + 181907262 TGAGTTTGCTCCCTTTTTGAGTAATTGCTCAATCCAATTAAATGTCATTGGCCAGAATTGTATTGTATGGCCTCTCCTCTCTGCCAGACGG-CTGATTATTGTTTTTTACATGATAACATGATGATCTCCCAGCCCCTAAAATGACATTCTCTTATGAAAGAAGACAGAAAGGGAAGGAAATCAGTCTATCAC-------AAAAATCC-ATCTTTATTGCTACCTCTTAAATAATTTTCAAATCTATTCATATTTCTGTATTTCCATTTATATCATGTTTTAACAGACAagaaataag---aaatcagttaattgaattgatcagggagggtctcagggaggagatgagacttgaaaatgggttttgaggtttagctattgcttggagaagagaggaaggtaggaattccaagcaa-aagggaagaaaggataaaagctccaagatggacgtgatcatggtacatacatatgagtgtgattatggttatgggcaaagagacaattaggagataagacTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20284044 506 + 183735486 TGAGTTTGCTCCCTTTTTGAGTAATTGCTCAATCCAATTAAATGTCATTGGCCAGAATTGTATTGTATGGCCTCTCCTCTCTGCCAGACAG-CTGATTATTGTTTTTTACATGATAACATGATGATCTCCCAGCCCCTAAAATGACATTCTCTTATGAAAGAAGACAGAAAGGGAAGGAAATCAGTCTATCAC-------AAAAATCC-ATCTTTATTGCTACCTCTTAAATAATTTTCAAATCTATTCATATTTCTGTATTTCCATTTATATCATGTTTTAACAGACAagaaataag---aaatcagttaattgaattgatcagggagggtctcagggaggagatgagacttgaaaatgggttttgaagtttagctattgcttggagaagagaggaaggtaggaattccaagcaa-aagggaagaaaggataaaagctccaagatggacgtgatcatggtacatacatatgagtgtgattatggttatgggcaaagagacaattaggagataagacTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4770834 506 - 13748885 TGAGTTTGCTCCCTTTTTGAGTAATTGCTCAATCCAATTAAATGTCATTGGCCAGAATTGTATTGTATGGCCTCTCCTCTCTGCCAGACGG-CTGATTATTGTTTTTTACATGATAACATGATGATCTCCCAGCCCCTAAAATGACATTCTCTTATGAAAGAAGACGGAAAGGGAAGGAAATCAGTCTATCAC-------AAAAATCC-ATCTTTATTGCTACCTCTTAAATAATTTTCAAATCTATTCATATTTCTGTATTTCCATTTATATCATGTTTTAACAAACAagaaataag---aaatcagttaattgaattgatcagggagggtctcagggaggagataagacttgaaaatgggttttgaggtttagctattgcttggagaagagaggaaggtaggaattccaagcaa-aagggaagaaaggataaaagctccaagatggacgtgatcatggtacatgcatatgagtgtgattatggttatgggcaaagagacaattaggagataagactT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53807584 493 - 163208435 TGAGTTTGCTCCCTTTTTGAGTAATTG-------------AATGTCATTGGCCAGAATTGTATTGTATGGCCTCTCCTCTCTGCCAGACGG-CTGATTATTGTTTTTTACATGATAACATGATGATCTCCCAGCCCCTAAAATGACATTCTCTTATGAAAGAAGACAGAAAGGGAAGGAAATCAGTCTATCAC-------AAAAATCC-ATCTGTATTGCTACCTCTTAAATAATTTTCAAATCTATTCATATTTCTGTATTTCTATTTATATCATATTTTAACAAATGAGAAATAAG---AAATCAGTTAATTGAATTgatcagggagggtctcagggaggagatgagacttgaaaatgggttttgagatttagctattgcttggagaagaaaggaaggtaggaattccaagcaa-aagggaagaagggttaaaagctccaagatggacatgatcatggtacatacatatgagtgtgattatggttatggacaaagagacaattaggagataagacTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87833976 504 - 180051392 TGAGTTTGTTCCCTTTTTGAGTAATTGCTCAATCCACTTTTATGTCATTGGCTAGAATTGTATTGTATGGTCTCTCCTCTCTGCCAGACAGGCTGATTATTGTTTTTTACATGATAACATGAAGATCTCCCAGCCCCTAAAATGATATTCTCTCATGAAAGAAGACAGAAAGGGAAGGAAATCAGTCTATCAC-------AAAAATTC-ATCTTTAATGCTACCTTTTAAATAATTTTCAAATCTATTCATATTTCTGTATTTCCATTTATATCATATTTTAAcaaatgagaaat------aaatcagttggttgaattgatcagggagggtctcaaggaggagatgagacttgaaaatgggttttgaggtttagctattgtttggagaagaagggaaggtaggaattccaagcaa-aagggaagaagggataaaagctccaagatggATGTGATCATGGTACATACATATGAGTGTGATTATGGTTATGGGCAGAGAGACAATTAGGAGATAAGATTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87938396 504 - 181584905 TGAGTTTGTTCCCTTTTTGAGTAATTGCTCAATCCACTTTTATGTCATTGGCTAGAATTGTATTGTATGGTCTCTCCTCTCTGCCAGACAGGCTGATTATTGTTTTTTACATGATAACATGAAGATCTCCCAGCCCCTAAAATGATATTCTCTCATGAAAGAAGACAGAAAGGGAAGGAAATCAGTCTATCAC-------AAAAATTC-ATCTTTAATGCTACCTCTTAAATAATTTTCAAATCTATTCATATTTCTGTATTTCCATTTATATCATATTTTAACAAATGAGAAAT------AAATCAGTTGGTTGAATTgatcagggagggtctcaaggaggagatgagacttgaaaatgggttttgaggtttagctattgtttggagaagaagggaaggtaggaattccaagcaa-aagggaagaagggataaaagctccaagatggatgtgatcatggTACATACATATGAGTGTGATTATGGTTATGGGCAGAGAGACAATTAGGAGATAAGATTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1161316 490 - 8785636 TGAGTTTGTTCCCTTTTTGAGTAATTGCTCAATCCACTTTTATGTCATTGGCTAGAATTGTATTGTATGGTCTCTCCT--------------CTGATTATTGTTTTTTACATGATAACATGAAGATCTCCCAGCCCCTAAAATGATATTCTCTCATGAAAGAAGACAGAAAGGGAAGGAAATCAGTCTATCAC-------AAAAATTC-ATCTTTAATGCTACCTCTTAAATAATTTTCAAATCTATTCATATTTCTGTATTTCCATTTATATCATATTTTAAcaaatgagaaat------aaatcagttggttgaattgatcagggagggtctcaaggaggagatgagacttgaaaatgggttttgaggtttagctattgtttggagaagaagggaaggtaggaattccaagcaa-aagggaagaagggataaaagctccaagatggATGTGATCATGGTACATACATATGAGTGTGATTATGGTTATGGGCAGAGAGACAATTAGGAGATAAGATTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1629527 504 + 27333823 TGAGTTTGTTCCCTTTTTGAGTAATTGCTCAATCCACTTTTATGTCATTGGCTAGAATTGTATTGTATGGCCTCTCCTCTCTGCCAGACAGGCTGATTATTGTTTTTTACATGATAACATGAAGATCTCCCAGTCCCTAAAATGATATTCTCTCATAAAAGAAGACAGAAAGGGAAGGAAATAAGTCTATCAC-------AAAAATTC-ATCTTTAATGCTACCTCTTAAATAATTTTCAAATCTATTCATATTTCTGTATTTCCATTTATATCATATTTTAAcaaatgagaaat------aaatcagttggttgaattgatcagggagggtctcagggaggagatgagacttgaaaatgggttttgaggtttagctattgtttggagaagaagggaaggtaggaattccaagcaa-aagggaagaagggataaaagctccaagatggATGTGATCATGGTACATACATATGAGTGTGATTATGGTTATGGGCAGAGAGACAATTAGGAGATAAGATTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1899626 504 - 91010382 TGAGTTTGTTCCCTTTTTGAGTAATTGCTCAATCCACCTTTATGTCATTGGCTAGAATTGTATTGTATGGCCTCTCCTCTCTGCCAGACAGGCTGATTATTGTTTTTTACATGATAACATGAAGATCTCCCAGCCCCTAAAATGATATTCTCTCATGAAAGAAGACAGAAAGGGAAGGAAATCAGTCTATCAC-------AAAAATTC-ATCTTTAATGCTACCTCTTAAATAATTTTCAAATCTATTCATATTTCTGTATTTCCATTTATATCATATTTTAACAAATGAGAAAT------AAATCAGTTGATTGAATTGATCAGGGAGGGTCTCAGGGAGGAGATGAGACTTGAAAATGGGTTTTGAGGTTTAGCTATTGTTTGAAGAAGAAGGGAAGGTAGGAATTCCAAGCAA-AAGGGAAGAAGGGATAAAAGCTCCAAGATGGACGTGATCATGGTACATACATATGAGTGTGATTATGGTTATGGGCAGAGAGACAATTAGGAGATAAGACTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2010667 504 + 5179401 TGAGTTTGTTCCCTTTTTGAGTAATTGCTCAATCCACTTTTATGTCATTGGCTAGAATTGTATTGTATGGCCTCTCCTCTCTGCCAGACAGGCTGATTATTGTTTTTTACATGATAACATGAAGATCTCCTAGCCCCTAAAATGATATTCTCTCATGAAAGAAGACAGAAAGGGAAGGAAATAAGTCTATCAC-------AAAAATTC-ATCTTTAATGCTACCTCTTAAATAATTTTCAAATCTATTCATATTTCTGTATTTCCATTTATATCATATTTTAAcaaatgagaaat------aaatcagttggttgaattgatcagggagggtctcagggaggagatgagacttgaaaatgggttttgaggtttagctgttgtttggagaagaagggaaggtaggaattccaagcaa-aagggaagaagggataaaagctccaagatggATGTGATCATGGTACATACATGTGAGTGTGATTATGGTTATGGGCAGAGAGACAATTAGGAGATAAGATTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7716711 504 - 21726897 TGAGTTTGTTCCCTTTTTGAGTAATTGCTCAATCCACTTTTATGTCATTGGCCAGAATTGTATTGTATGTCCTCTCCTCTCTGCCAGACAGGCTGTTTATTGTTTTTTACATGATAACATGAAGATCTCCCAGCCCCTAAAATGACCTTCTCTCATGAAAGAAGACAGAAAAGGAAGGAAATCAGTCTATCAC-------GAAAATTC-ATCTTTAATGCTACCTCTTAAATGATTTTCAGATCTATTCCTATTTCTGTATTTTCATTTATATCATATTTTAAcaaatgagaaat------aaatcagttgattgaattgatcagggagggtctcagggaggagatgagacttgaaaatgggttttgaggtttaggtattgtttggagaagaagggaaggtaggaattccaagcaa-aagagaaggagggataaaagctccaagatggacgtgatcatggtacatatatatgagtgtgattatggttatgagcagagagaaaattaggagataagactT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112537231 507 + 204313951 TGAATTTGCTCCCTTTTTGAGTAATTGCTCAATCCACTTATATGTCATTGGCCATAATTGTATTGTATGGCCTCTCCCCTCTGCCAGCCAGGCTGACTACTGTTTTTTACGTGATAACATGATGATCTCCCAGCCCCTAAAATGACATTCTCTTAGGAAAGAA-ACAGAAAGGGAAGGAAATCAGCCTATCACACAAAAAAAAAATCC-ATCTTTAATGCTACCTCTTAAATAATTTTCAAATCTATTCATATTTCTGTATTTCCATTTATATCATAGTTTAACAAATGAGAAATAAG----AATCAGTT-----AATTGATCAGGAAGGGTCTCAGGGAGGAGATGAGACTTGAAAATGGGTTTTGAGGTTTAACTATTGTTTGCAGAAGAAAGGAAGGCAGGAATTCTGAGCAA-AAGGAAAAAAGGGATAAAAGCTCCAAGATGGACATGATCATGGTACATACATGTGAGTGTGATTATGGTTATGGGCAAAGAGATAATTAGGAGATAAGACTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44982934 504 + 71252344 TGAGTTTGCTCCCTTTTTGACTAATT-CTCAATCCACTTATATGTCATTGGCCAGAATTGTATTGTATGGCCTCTCCTCTCTGCCAGCCAGGCTGATTATTATTTTTTACATGATAACATGATGATCTCTCAGCCCCTAAAATGACATTCTCTTAGGAAAAAAGACAGAAAGGGAAGGAAATCAGCCTATCAC----AAAAAAAATCC-ATCTTTAATGCTACCTCTTAAATAACTTTCAAACCTATTCATATTTCTGTATTTCCATTTATATCATAGTTTAACAAATGAGAAATAAG---AAATCAGTT-----AATTGATCAGGGAGGGTCTCAGGGAGGAGATGAGACTCGAAAATGGGTTTTGGGGTTTAGCTATTGTTTGCAGAAGAAAGGAAGGTAGGAATTCTGAGCAA-AAAGGAACAAAGGATACAAGCTCCAAGATGGACATGATCATGGTACATACATATGGGTGTGATTATGGTTATGGGCAAAGAGACAATTAGGAGATAAGACTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 346649 498 - 1393929 TGAGTTTACTCCCTTTTTGAGTAATTGCTCAATCCACTTATATGTCATTGGCCAAAATTGTATTGTATGGCCTCTCCTCTCTGCCAGCCAGGCTGATTATTGTTTTTTACATGATAACATGATGATCTCCCAGCCCCTAAAATGACATTCTCTTAGGAAAGAAGACAGAAAGGGAAGGAAATCAGCCTATCAC-----AAAAAAATCC-ACCTTTAATGCTACCTC--AAATAATTTTCAAATCTATTCATATTTCTGTATTTCCATTTATATCATAGTTGAACaaatgagaaataag------tcagtt-----aattgatcagggagggtctcagggaggagatgagacttgaaaatgggttttgaggtttagctattgtttgcagaagaaagaaaggtaggaattctgagcaa-aagggaaaaaggcataaAAGTTCCAAGA-AGACATGATCATGGTACATACCTATGAGTGTGATTATGGTTATGGGCAAAGAGACAATTAGGAGATAAGACTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1423858 504 - 15889662 TGAGTTTGCTCCCTTTTTGAGTAATTGCTCAATCCACTTATATGTCATTGGCCAGAATTGTATTGTATGGCCTCTCCTCTCTGCCAGCCAGGCTGATTATTGTTTTTTACATGATAACATGATGATCTCCCAGCCCCTAAAATGACATTCTCTTAGGAAAAAAGACAGAAAGGGAAGGAAATCAGCCTATCAC-----AAAAAAATCC-ATCTTTAATGCTACCTCTTAAATAATTTTCAAATTTATTCATATTTCTGTATTTCCATTTATATCACAGTTTAACAAATgagaaataag---aaatcagtt-----aattgatcagggagggtctcagggaggagatgagacttgaaaatgggttttgaggtttagctattgtttgcagaagaaaggaaggtaggaatgctgagcaa-aagggaaaatgggataaaagctccaagatggacatgATCATGGTACATACATATGAGTGTGATTATGGTTATGGGCAAAGAGACAATTAGGAGATAAAACTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84834703 499 + 108143057 tgagtttgctctctttttgagtaactactcaacccacttatgtctcattggccagaatggtgttgtatggcctctcctctctgccagacaggctgACTGCTGCTTTCTAGATGAGAACATTATGATCTCCCACCCCCCAAAATGACATTCTCTTAGGAAGAAGGACAAAAAGGGTAGGAAATCAGTTTATCAC-------AAAATTCC-ATCTTTAATGTTACCTCTTAAATAATCCCCAAATCTATTCATATTTCTATAATTCCATTTATATCATA-TTTAACAAATgag----aagaggaaatcagttaattgaattgatcaaggaggatctctgagaggaggtgagacgcaaaaatgggttttaagg-ttagttatagtttggagaagaaagtggggtaggaattccaaacaa-aaggacagaagggataaaagtcccaagatggaaatgatcatggtaca-----atgagcgtgattatggttatgagaaaagagactagtaggagataagactT i micMur3.chr12 I 367 I 227 s proCoq1.NW_012147189v1 604958 501 - 10520994 tgagtttgctctctttttgggtaactacttaatccacttatatctcattggccagaattgtattgtatggcctctcctctctgccagacaggctgACTGTTACTTTCTAGATGAGAACATTATGATGTCCCACCCCCCAAAATAACATTCTCTTAGGAAGGAGGACAGAAAGGGTAGGAAAT-AGTTTATCAC-------AAAACTCC-ATCTTTAATGTTACCTCTTAAATAATTCTCAAAACTATTCATATTTCTGTAATTCCATTTATATCATA-TTTAACAAATGAGAAATAAGAGGAAATCAGTTAATTGAATTGATCAAGGAGGATTTCTGA---GAGATGAGACACAAAAATGGCTTTTCAGGTTTAGATATAGTTTGGAGAAGAAAGTGGGGTAGGAATTCTAAACAA-AAGGACAAAAGGGATAAAAGTCCCAAGATGGAAATGATCATGGTACA----TATGAGTATGATTTTGGTTATGGGAAAACAGACAAGTAGGAGATAAGACTT i proCoq1.NW_012147189v1 C 0 I 105 s otoGar3.GL873536 1305003 486 - 29863360 TGGGTTTGCTCTC--ACTGAGTAACTACTCAGCCCACTTATG--TAATTGGCCAGAGGTGTAT--TATGGCCTCTCCTATCTGCCAGGTGGGCCGTTCACTGCTTTCTAGATGAGATCATC-TGATCACCTGTTCCCCAAAATGATGTTATCTGA-GAAGGAGGACAGAAAGGGCATGAAATCAGTTTATCAC-------AAAAATTC-ATCTTTAATGTCACCTCTTACATAAATCTCAAGCCTATTTTTATTTCTACATTTTCATTT-----ATA-TTTAACAAATGAGAAATAGGAAGAAATCAGTTAATTGACT-----aagaaggatttctgggtggaggtgcaattcacacatgagttttgaggtctcgctatagcttggagaagaaaatagggtatgaattccaagcaa-aaggacagaagggataaaagtcccaagatggaaatgaTCA-AGTACA----TGTGAGTGTGTTTAGGGTTATGGGAAAAGAGACAGTTAGAAGATCTGACTT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14322123 503 + 91889043 TGAGTTTACTCCCTTTTTGAGAAACTCTTCAGTCTACCTATATCTCATTGGCCAGAATTATATTGCAGGACATCCTCTGCCTGCCAGAGAAGCTGGTTGTTGTTTTCTGGATGAGAACATTACTATTCCTCACTCGACAAATTGACATTCTCTTAGAAAGGAAAATGGAAATGGTAGGAAATTAGTCTGTCAT-------AAAAATCCTATCATTAATGTTATGTC--AAATAATTCTTAAATCTATTCATATTTCTTTATTCCCCTGT-TACTATA-TTTAGCAAATTAGAGAAAAGAAGATATCAGTTAATTGGATTGATCAGGGAGTATATCATG-AGGATGTGGGACTGGAAGATGAATTTTGAAGGTTAGTTATCCTTTGGAGAAGAAAGTGGGGTAGGAGTTCTAAGCAAGAAGAAAAGAGGGAATAAAAGCCCCAGGATGGAAATGATCATCGTACA----TATGAGTGTGATTCTGGTTATGGGCAAAGAGACAATTAGGAGATCAGAGTT i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I a score=316260.000000 s hg38.chr5_GL383530v1_alt 39443 29 + 101241 TCTTGATCTGAGATGTTTGAGACAATC--tt s panTro5.chr5 20268194 29 + 181907262 TCTTGATCTGAGATGTTTGAGACAATC--tt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20284550 28 + 183735486 TCTTGATCTGAGATGTTTGAGACAATC---t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4771340 31 - 13748885 TCTTGATCTGAGATGTTTGAGACAATCtttt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53808077 29 - 163208435 TCTTGATCTGAGATGTTTGAGATAATC--TT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87834480 29 - 180051392 CCTTGATGTGAGATGTTTGAGACAATC--TT i rheMac8.chr6 C 0 I 6049 s macFas5.chr6 87938900 29 - 181584905 CCTTGATGTGAGATGTTTGAGACAATC--TT i macFas5.chr6 C 0 I 6046 s macNem1.NW_012011400v1 1161806 29 - 8785636 CCTTGATGTGAGATGTTTGAGACAATC--TT i macNem1.NW_012011400v1 C 0 I 5939 s cerAty1.NW_012002401v1 1630031 29 + 27333823 CCTTGATGTGAGATGTTTGAGACAATC--TT i cerAty1.NW_012002401v1 C 0 I 6047 s chlSab2.chr4 1900130 29 - 91010382 CCTTGATCTGAGATGTTTGAGACAATC--TT i chlSab2.chr4 C 0 I 6162 s manLeu1.NW_012103732v1 2011171 29 + 5179401 CCTTGATGTGAGATGTTTGAGACAATC--TT i manLeu1.NW_012103732v1 C 0 I 15645 s colAng1.NW_012115488v1 7717215 29 - 21726897 CCTTGATCTGAGATGTTTGTGACCATC--TT i colAng1.NW_012115488v1 C 0 I 6211 s calJac3.chr2 112537738 29 + 204313951 TCTTGATCTGAGATGTTTGAGATAATC--TT i calJac3.chr2 C 0 I 3709 s saiBol1.JH378106 44983438 29 + 71252344 TCTTGATCTGAGTTGTTCGAGACAATC--TT i saiBol1.JH378106 C 0 I 6293 s cebCap1.NW_016107830v1 347147 29 - 1393929 CCTTGATCTGAGATGTTTGAGACAATC--TT i cebCap1.NW_016107830v1 C 0 I 6318 s aotNan1.NW_018506370v1 1424362 29 - 15889662 TCTTGATCTGAGATGTTTGAGACAATC--TT i aotNan1.NW_018506370v1 C 0 I 6047 s otoGar3.GL873536 1305489 29 - 29863360 GCTCGAGCTGAGAAGTTGAAGATGATT--TT i otoGar3.GL873536 C 0 I 1 s canFam3.chr3 14322626 29 + 91889043 GCATGAGCTAAGATGTTTAGAAAAATC--TT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I a score=1698477.000000 s hg38.chr5_GL383530v1_alt 39472 1915 + 101241 ttt--------tttttatactttaagttttagggtacgtgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcatccattaactcgtcattta-cattaggtatatctcctaatgctatccctcccccctccccccaccccacaacagtccccggtgtgtgatgctccccttcctgtgtccatgtgttctcattgttcagttcccacctacgagtgagaacatgcagtgtttggttttttgtccttgccatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacaagaactcatcattttctatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctattgttgttggacatttggagtggttccaagtctttgctattgtgaatagtgccgcaataaacatatatgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctaggtcaaatggtatttctagttctagatccctgaggaatcgccaccctgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgacttcttaatgatcgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccaataatgatgagcatc-tttcatgtg-ttttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccacttgtagatggggttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggctattagccctttgtcagatgagtaggttgccaaaattttct-cccattctgtaggttgcctgttcactctgatggtggtttcttttgctgtgcagaagctctttagtttgattagatcccatttgtcaatgttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatgatattgcctaggttttcttctagggtttttatggttttaggcctaacatgtaagtctttaatccaccttgaagtaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagcccattttcccagcaccatttattaaatggggaatccttt-ccccattgcttgtttttctcaggtttgtcaaagatcagatagttgtagatatgcggcattatttctgagggctctgttctgttccattgatctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgttcttttggcttgggattgacttgatgatgcgggctcttttttggttccatatgaactttaaaatagttttttccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctacaacttaccttgggcagtattgccattttcatggtattgattcttcctacccatgagcat-gaatgttctt-catttgtttgtatcttcttttatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaaggtggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtctgttactggtgtataagaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagatttggggctgagacaatggggttttctagat s panTro5.chr5 20268223 1916 + 181907262 ttt--------tttttatactttaagttttagggtacgtgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcatccattaactcgtcattta-cattaggtatatctcctaatgctatccctccccactccccccaccccacaacagtccccggtgtgtgatgctccccttcctgtgtccatgtgttctcattgttcagttcccacctacgagtgagaacatgcagtgtttggttttttgtccttgcaatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttctatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctattgttgttggacatttggagtggttccaagtctttgctattgtgaatagtgccgcaataaacatatatgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctaggtcaaatggtatttctagttctagatccctgaggaatcaccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgacttcttaatgatcgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagagatgatgagcatcttttcatgtg-ttttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccacttgtagatggggttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggctattagccatttgtcagatgagtaggttgccaaaattttct-cccattctgtaggttgcctgttcactctgatggtggtttcttttgctgtgcagaagctctttagtttgattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatgatattgcctaggttttcttctagggtttttatggttttaggtctaacatgtaagtctttaatccaccttgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatccttt-ccccattgcttgtttttctcaggtttgtcaaagatcagatagttgtagatatgcggcattatatctgagggctctgttctgttccattgatctgtatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgttcttttggcttgggattgacttgacaatgcgggctcttttttggttccgtatgaactttaaaatagttttttccaattctgtgaagaaagtcattgggagcttgatggggatggcattgaatctacaacttaccttgggcagtattgccattttcacggtattgattcttcctacccatgagcat-gaatgttctt-catttgtttgtatcttcttttatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaaggtggattcctaggtattttattctctttgaagcaattgtgaatgggagttccctcatgatttggctctctgtttgtctgttactggtgtataagaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagatttggggctgagacaatggggttttctagat i panTro5.chr5 C 0 I 4057 s panPan2.chr5 20284578 1915 + 183735486 ttt--------tttttatactttaagttttagggtacgtgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcatccattaactcgtcattta-cattaggtatatctcctaatgctatccctcccccctccccccaccccacaacagtccccggtatgtgatgctccccttcctgtgtccatgtgttctcattgttcagttcccacctacgagtgagaacatgcagtgtttggttttttgtccttgcaatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttctatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctattgttgttggacatttggagtggttccaagtctttgctattgtgaatagtgccgcaataaacatatatgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctaggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgacttcttaatgatcgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagagatgatgagcatcttttcatgtg-ttttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccacttgtagatggggttgtttg-ttttttcttgtaaatttgtttgagttcattgtagattctggctattagccatttgtcagatgagtaggttgccaaaattttct-cccattctgtaggttgcctgttcattctgatggtggtttcttttgctgtgcagaagctctttagtttgattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatgatattgcctaggttttcttctagggtttttatggttttaggtctaacatgtaagtctttaatccaccttgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatccttt-ccccattgcttgtttttctcaggtttgtcaaagatcagatagttgtagatatgcggcattatatctgagggctctgttctgttccattgatctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgttcttttggcttgggattgacttgacaatgcgggctcttttttggttccgtatgaactttaaaatagttttttccaattctgtgaagaaagtcattgggagcttgatggggatggcattgaatctacaacttaccttgggcagtattgccattttcacggtattgattcttcctacccatgagcat-gaatgttctt-catttgtttgtatcttcttttatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaaggtggattcctaggtattttattctctttgaagcaattgtgaatgggagttccctcatgatttggctctctgtttgtctgttggtggtgtataagaatgcttgtggtttttgcacattgattttgtatcctgagagtttgctgaagttgcttatcagcttaaggagatttggggctgagacaatggggttttctagat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4771371 1921 - 13748885 ttt--------tttttatactttaagttttagggtacatgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcattta-cattaggtatatctcctaatgctatccctccccttgctgcctaccccacaacagtccccggtgtgtgatgctccccttcctgtgtccatgtgttctcattgttcagttcccacctacgagtgagaacatgtggtgtttggttttttgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatagactcatcattttttatggctgcatagtattccatggtgtatatgtgccacatttgcttaatccagtctatcgttgttggacatttggagtggttccaagtctttgctattgtgaatagtgccacaataaacatacgtgtgcacgtatctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctaggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgacttcttaatgatcgccattctaactggtgtgagatggtatctcatagtggttttgatttgcatttctctgatggccagtaatgatgagcatcttttcatgtgtttttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccacttgtagatggggttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatatcagccctttgtcaaatgagtaggttgccaaaattttctccccattctgtaggttgcttgttcactctgatgatggtttcttttgctgtgcagaagctctttagtttgattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagagatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacatgtaagtctttaatccaccttgaattaatttttgtataaggtgtaaggaaggggtccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatcctttcccccattgcttgtttttctaaggtttgtcaaagatcagatagttgtagatatgcggcattatttctgagggctctgttctgttccattgatctatatctctgttttggtaccagtactatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgttcttttggcttaggattgacttggcgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctacaacttaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatcctcttttgtttcattgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaacgcgagttcactcatgatttggctctctgtttgtctattattggtgtataagaatgcttgtgatttttgtgtattgattttgtatcctgagactttgctgaagttggttatcagcttaaggagattttgggctgagacgatggggttttctagat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53808106 1923 - 163208435 ttttattattattattatactttaagttctagggtacatgtgcacaacgggcaggtttgttaaatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttagcattaggtatatctcctaatgctatccctcccccctccccccaccccacaacagttgccggtgtgtgatgctccccttcctgtgtccatgtgttctcattgttcagttcccacctgtgagtgagaacatgtggtgtttggttttttgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccatattttcttaatccagtctatcattgttggacatttaggttggttccaagtctttgctattgtgaatagtgccacaataaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatataccccgtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcttgactttttaatgatcgccattctaactggtgtgagttggtagctcattgtagttttcatttgcatttctctgatggccagtgatgatgagcatcttttcatgtg-ttttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcgcccactttttgatgggcttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgattaggttgcgaaaattgtct-cccattctgtaggttgcctgttcactctgatggtggtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacatgtaagtctttaatccaccttgaattaatttttgtataaggtataaggaagggatccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatccttt-ccccattgc----ttttgtcaggtttgtcaaagatcagatagttgtagataggtggcattatttctcagggctctgttctgttccattgatctatgtctctgttttggtaccagtaccatgctgttttggttactgtagccttgtaatatagtttgaagtcaggtagcgtgatgcctccagctttgttcttttggcttaggattgacttggcgatgcaggttcttttttggttctatctgaactttaaagtagttttttccaattctgtaaagaaagttattggtagcttgatggggatggcattgaatctataaattaccttgggcagtatggccattttcatgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaaattggattcctaggtattttattctctttgaagcaatcgtgaatggaagttcactcaggatttggctctctgtttgtctgttattggtgtataagtatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacaatggggttttctagat i nomLeu3.chr2 C 0 C 0 e canFam3.chr3 14322655 0 + 91889043 C e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I e aotNan1.NW_018506370v1 1424391 6047 - 15889662 I e cebCap1.NW_016107830v1 347176 6318 - 1393929 I e saiBol1.JH378106 44983467 6293 + 71252344 I e calJac3.chr2 112537767 3709 + 204313951 I e colAng1.NW_012115488v1 7717244 6211 - 21726897 I e manLeu1.NW_012103732v1 2011200 15645 + 5179401 I e chlSab2.chr4 1900159 6162 - 91010382 I e cerAty1.NW_012002401v1 1630060 6047 + 27333823 I e macNem1.NW_012011400v1 1161835 5939 - 8785636 I e macFas5.chr6 87938929 6046 - 181584905 I e rheMac8.chr6 87834509 6049 - 180051392 I a score=5453673.000000 s hg38.chr5_GL383530v1_alt 41387 6056 + 101241 atacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaactgaataccctttatttccttctcctgcctaattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccag-tttttgtccattcagtatgatgttggctgtgggtttgtcatagatacatcttattat------------------------------tttgagatacgtcccatgaatacctaatttattgagag-tttttagcatgaagcattgttgaattttttcaaaggccttttctgcatctattgagataatcatgtggtttttgtctttggttctgtttatatgatggattacgtttattgattttcatatgttgaagcagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctggattcggtttgccagtattttattgaggatttttgcatcaatgttcatcaaggatgttggtctaaaattatttatttAGAAAGCAGAATGGgagagatgttgagtaagatggccaaatagaaggcttcactgattgttccccctgcaaggacaccagtttaacaactatttaaacaacaa-aaaaaaagcaagttcctgagaaccaaaaatcaggtgagcactcacagttcctgattttaacttcatatcactgaaagagccactgaaaagagtaggagacagtcttgaagtgctgatgccacccctcccgcatctcctatgccccaaacgtgcagcgcagagagagaatctatgtgcttgggagaaggagagcacagcaattgtgagacattgtgttgaattcagtggtgccctatcacaacagaaagctaagccagctgaactcagttgaccccctactcatggaaggagtattttaactggccctagccggaagggaatcacccatcccagctgtcagaactggagttctggcaagccttgccaccacagaataaagtgcctctgaaaccctaaataaacttaaaaggcagtctaggcaacaaggactgtaactcctaggcaggtcctagtgctgaactgggctcagaaccagtggactggggggacacatgacctactgagacaacagccagggaggctaagggaatgcttgccccacccctctccccagtcccaggctgaacagctcgcagctccaaatgagaccccttccttccgcgtgaggagagagaagattgaagaggactttgtctttcatctaggatactggcatagccacagtaggaaaggacacctgtcagagtcaggaggccaactttcaggccctcgctcctggacaatatttctagacacaccctggactggaagggaacccactcccttgaaaggaaggacccagtcctggcaggcctcataccctgctgactaaagaacacttgatccctgaataaccagcagtgataccaaggtaatat-gccacaggccttgggtgagaccctgagacttactggcttcaggtgagatttagcatattcccagctctggtggctatggggagagactccttcttcttgagaaaagcagagggaaaagtaaagggaactttggcttgcatcttgaagagcccttggcccttaagtgaacatcagtgggtaccagcttggccatgagagtagagcacaagtgggatcttgggttccccagttctaggccttgggccttggatcgcatttctggacctgccctgggccagagggaagtccactaccctgaagatgagtcccagggcagggagcattcaccacaagctgactgaagagcgcttggcctttaagtgaacatcagtggtagcctagcagtactccccatgggtctgtagtggtggcaatgggatgaggcccctctgcctttggaaaagggagggaagagtgggaaggactgtgttttgtggtttgagtgccagctcagccacagtacagtagaacactgagtacacttctaaggttttaaactccagtctctggctcctggatggcatctgtggacttgcctggagattaggggaacttgccaccctgaagggaaggacacaaacctggctggctttgccatgtgctgattgtagagccccaagtccttgagcaaacataggcagtagtcagcggtgatcactggccttgagtgagacccagtgctatgctggcttcaggtctgacccagcatagccccagtcgtggccacaggggtacttgtgtcacccaacctctagctctagatatctcagaacagagacagactccatttgtttgggagaaagaaagggacaagaacaagagtatctgttggtaatccagagaattcttctggatcttacccaagaccaccaaggtggtacctctttgagtttgtaagaaccacagtattactggacttggggtgccccataatgcagataaggcttagatcacaacactcaagtcccttcaaatactggaaagccttcccaagaaagagggctacaaacaagcccagactgtggagactaaaataaatatctaattcttcaatgcccagacactgatgaacatccacagcattgagaccagccaggaaaacatgacctcaccaaaggaactgaataaggcactagagaccaatcctggggaaacagagatatgtaacctttcagacaaagaattcaaaataggtgttttgaggaactcaaagaatttcaagacaatacagagaaggaattcagaatgctgttggataaactgaacaaagagattgacatgattagaaaaaatcaagcagaaattccggagttgaaatgcaatcgacataccaaagagtgcatcagagtcttttaatgacaaaattgatcaaacggaagaaggaataagtgagcttgcagacaagctatttgaaaatacacag----aggagacaaaagaaaaaataataaaaaacaacaaagcatattttctacaggatgtagaaaatagtctcggaagggcaaatctaagagataaggcattaaagaggaggtagagaaagcgatagaggtagaaagtttattgaaaaggataataacagagaaacttcccaagcctcaagaaagatatcaatatccaagtacaagaaggttatagaacaccaaacagatttaactcaaagaagcctacctcaaggcatttaatgaccaaactccccaaagtcaaggataaataaaggatcctaaaagcggcaagagaaaaaa-caaacaaacaaataacataccatagagcaccagtccatctggcagcagacttttcagtggaaatcttacaggccaggagagagtggcatggcatatttaaagtactgaagg-aaaaaacaccttttaccttagtagtatatctgaaaaatatccttcaaacacaaaggagaaatgaggactgtcccagacaaaggctgaaggatttcatcatcaccagacttatcctacaagaaatgctaaagggagtacttcagttttttaaaaaaaaggatgttaatgagcaataagaagtcatctgaaggtgtaaaacttactggtaatggtaagtatatagaaaaacacagaatattataacactataactgtggtgtgtaatctacttctatcccaagaagaaagactaaatgaaccaataaaaaataactacaacagtttttcaagacacagtcaatacaataagatataaatagaaacaacaagataaaaagtggagggatacagcactttgggaggccaagatgggcagattacctgaggtcaggaattcgagaccagcctggccaaaatggtgaaacccgtctctactaaaaatacaaaaactagccaggcgtggtggcacaagcctgtaatcccagctacttgggaggttgagacaggagaattgcttgatcctgggagacggaggttgcagtgagtcaacatcacgccactgtacttcagcctggccggcagagcaagact--gtctcaaataaataaataaataaataaaagtggagggatgaagttaaggtgtagagcttttatcagttttctttttacttttttatgtaaacagtattaggttgttatcaacttaaaatgatggattataagatagtatttgcaagccttatgctaacctcaaataaaaaaatacaatagatatgcaaaacataagaagcaagaaattaaaccatattaccagagaaaatcaccttcactagagagaggacaggaagaaaagaaaaaaggaagagaagaccgcaaaacaaccagaaaacaaataacaaaatggaaggagtaagtctttatttatcaataataacattaatgcaaatggacaaaactctccaatcaaaagacatagaatggctgaatggatt-aaaaaaaccaagacccagtgatctgttgcctgcaataaatgcactttacttataaagataaatatagattgaaagtaaggggatggaaaaagacattccatgccaatggaaactaaaaaagagcaggatttgcaatacttagatcagaaaaaatagaattcaagacaaaacattgagaagagacaaagtaaggtcactgtataatgataaaggggtcaattcagcaggaggatatgattattgtaaatatatatgcatccaacactggggcacccagatatataaagcaaatattattagagctaaagagaaagatcgattccaataaaataatagctggagacttcaacaccacactttcagcattggacagattttctagagagaaaatcaaccaagaaacattggacttaatctgcactatagatcaaatggatctaatagatatttacagaacatttcatccaacagctacagaaaacacattcttttcttcagtacatggatcgttctcaaggatggatcggtatgttaggtcacaaaacaagtcttagagcattcaaaaacttgaaatagtatcaagcatgttctctgaccacaatggaataaactagaaatcaataacaagagtaattttggaaactatacaaacacatggaaattaaacaatatgc-cccgaatgaccagtgggtcaatgaagaaattaaggaggaaattgaaaaatttctttaaacaaatg--ataatagaaacacaacataccaaaacctgtgggacacagtgaaaacaatgcagagagggtagctgatagctctaagtgtctacatcaaaaaagaagaaaaacttcaaataaataacctaaagatgcattttaaggaattagaaaagcaagcggaaa-ttgaaccc-aaaattagtagaaa-aaaagaaataatgaaaatcaaagcagaaat-aaatgaatttgaaatgaagaaattaatacaaaagatcaataaaataaaagttggttttttaaaaagatgaaaacaatttgtaaaactttagccagactagtaagaaaaaagagagaagatccaaacagataaaattagagttgaagaagcagacattacaactgatactgcagaaattgaaaggatcattagtggctactgtgagcaactatatgccagtaaattggaaaatctagaagaaatgagtgaatttctagatacatacaaccttccaagattgaaccatgaagaaatccaaaatatgaacagaccaataacaagtagtgagatcaaagctgtaataaaaaggctgccatcaacaataagcccaggacctgaaggcttcactgctgaatctaccaaatatATATTTAAAtttttttatttccataggttattggggaacaggtggtgattggttccatgagtaagttgtttagtggtgatttgtgagattttggtgcacccatcactcgagcagtatTGAAGTTgattgaagaattaatattgctaaaatgtccatattacttaaagcaatagacaagtttaatgcaatccctatccaaataccaagtgtgcaagtctcatccaggttgctgtgaatgccattaagtcattcctttctatggatgagtagtattccat s panTro5.chr5 20274196 6057 + 181907262 ATacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaactgaataccctttatttccttctcctgcctaattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccag-tttttgtccattcagtatgatgttggctgtgggtttgtcataggtacatcttattat------------------------------tttgagatatgtcccatgaatacctaatttattgagag-tttttagcatgaatcgttgttgaattttttcaaaggccttttctgcatctattgagataatcatgtggtttttgtctttggttctgtttatatgatggattatgtttattgattttcatatgttgaaccagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctggattcggtttgccagtattttattgaggatttttgcatcaatgttcatcaaggatgttggtctaaaattatttatttAAAAAGCAGAATGGgagagatgttgagtaagatggccaaacagaaggcttcactgattgttccccctgcaaggacaccaatttaacaactatttaaacaacaacaaaaaaagcaagttcctgagaaccaaaaatcaggtgagcactcacagttcctgattttaacttcatatcactgaaagagccactgaaaagagtaggagacagtcttgaagtgctgatgccacccctcccgcatctcctatgccccaaacgtgcagcgcagagagagaatctatgtgcttgggagaaggagagcacagcaattgtgagacattgcattgaattcagtggtgccctatcacaacagaaagctaagccagctgaactcagttgaccccctactcatggaaggagtattttaactggccctagcccgaagggaatcagccatcccagctgtcagaactggatttctggcaagccttgccaccacaggataaagtgcttctgaaaccctaaataaacttaaaaggcagtctaggcaacaaggactgtaactcctaggcaagtcctagtgctgaactgggctcagaaccagtggactggggggacacatgacctactgagacaacagccagggaggctaagggaatgcttgccccacccctctccccaatcccaggctgaactgctcgcagctccaaatgagaccccttccttccgcgtgaggatagagaagattaaagaggactttgtctttcatctaggatactggcatagccacagtaggaaaggacacctgtcagagtcaggaggccaactttcaggccctcgctcctggacaatatttctagacacaccctggactggaagggaacccactcccgtgaaaggaagggcccagtcctggcaggcctcatcccctgctgactaaagaacacttgatccctgaataaccagcagtgataccaaggtaatat-gccacaggccttgggtgataccctgagacttactggcttcaagtgagatttagcatattcccagctctggtggctatggggagagactccttcttcttgagaaaatcagagggaaaagtaaagggaactttggcttgcatcttgaagagcccttggcccttaagtgaacatcagtgggtaccagcttcgccatgagggtagagcacaagtgggatcttgggttccccagttctaggccttgggcattggatcgcatttctggacctgccctgggccagagggaagtccactgccctgaagatgagtcccagggcggggagcattcaccacaagctgactgaagagcccttggcccttaagtgaacatcagtggtagcctagcagtactccccatgggtctgtagtggtggcaatgggatgaggcccctctgcctttggaaaagggagggaagagtgggaaggactgtgttttgtggtttgagtgcgagctcagccacagtacaatagaacactgagtacacttctaaggttttaaactccagtctctggctcctggatggcatctgtggacttgcctggagattaggggaacttgccaccctgaagggaaggacacaaacctggctggctttgccatctgctgattgtagagccccaagtccttgagcaaacgtaggcagtagtcagcggtgattactggccttgagtgagacccagtgctatgctggcttcaggtctgacccagcataatcccagtcgtggccataggggtgcttgtgtcacccaacctctagctctagatatctcagaacagagacagactccatttgtttgggagaaagaaagggacaagaacaagagtatctgttggtaatccagagaattcttctggatctttcccaagaccaccaacgtggtacctctttgagtttgtaagaaccacagtattactggacttgggatgccccataatgcagataaggcttagatcacaacactcaagtcccttcaaatactggaaagccttcccaagaaagagggctacaaacaagcccagactgtggagactgaaataaatatgtaattcttcaatgcctagacactgatgaacatccacagcattgagaccatccaggaaaatatgatctcaccaaaggaactgaataaggcactagagaccaatcctggggaaatagagatatgtaacctttcagacaaagaattcaaaataggtgttttgaggaactcaaagaatttcaagacaatacagagaaagaattcagaatgctgttggataaactgaacaaagagattgacatgattagaaaaaatcaagcagaaattccagagttgaaatgcaattgacataccaaagagtgcgtcagagtcttttaatgacaaaattgatcaaacggaagaaggaataagtgagcttgcagacaagctatttgaaaatacacagtcagaggagacaaaagaaaaaataataaaaaacaacaaagcatattttctacaggatgtagaaaatagtctcagaagggcaaatctaagagataaggcattaaagaggaggtagagaaagagatagaggtagaaagtttattgaaaaggataataacagagaaacttcccaagcctcaagaaagatatcaatatccaagtacaagaaggttatagaacaccaaacagatttaactcaaagaagcctacctcaagacatttaataaccaaactccccaaagtcaaggataaataaaggatcctaaaagcggcaagagaaaaaaacaaacaaacaaataacataccatagagcaccagtccatctggcagcagacttttcagtggaaatcttacaggccaggagagagtggcatgacatatttaaagtactgaagg-aaaaaacaccttttaccttagtagtatatctgaaaaatatccttcaaacacaaaggagaaatgaagaccctcccagacaaaggctgaaggatttcatcatcaccagacctatcctacaagaaatgctaaagggagtacttcaattttttaaaaaaa-ggatgttaatgagcaataagaagtcatctgaaggtgtaaaacttactggtaatggtaagtatatagaaaaacacagaatattataacactataactgtggtgtgtaatctacttctatcccaagaagaaagactaaatgaaccaataaaaaataactacaacagtttttcaagacacagtcaatacaataagatataaatagaaacaacaagataaaaagtggagggatacagcactttgggaggccaagatgggcagattacctgaggtcaggaattcgagagcagcctggccaacatggtgaaacccatctctactaaaaatacaaaaagtagccaggcttggtggcacaagcctgtaatcccagctactcgggaggttgagacaggagaattgcttgatcctgggagacggagattgcagtgagtcaacatcacgccactgtacttcagcctggccagcagagcaagactctgtctcaaataaataaataaataaa----agtggagggatgaagttaaggtgtagagcttttatcagttttctttttacttttttatgtaaacagtattaggttgttatcaacttaaaatgatggattataagatagtatttgcaagccttatgctaacctcaaataaaaaaatacaatagatatgcaaaacataagaagcaagaaattaaaccatattaccagagaaaatcaccttcactagatagaggacaggaagaaaagaaaaaaggaagagaagaccgcaaaacaaccagaaaacaaataacaaaatggaaggagtaagtctttatttatcaataataacattaatgcaaatggacgaaactctccaatcaaaagacatagaatggctgaatggatt-aaaaaaaccaagacccagtgatctgttgcctgcaataaatgcactttacttgtaaagataaatatagattgaaagtaaggggatggaaaaagacattccatgccaatggaaactaaaaaagagcaggatttgcaatacttagatcagaaaaaatagaattcaagacaaaacattaagaagagacaaagtaaggtcactgtataatgataaaggggtcaattcagcaggaggatatgattattgtaaatatatatgcatccaacactggggcacccagatatataaagcaaatattattagagctaaagagaaagattgattccaataaaataatagctggagtcttcaacaccacactttcagcattggacagattttctagagagaaaatcaaccaagaaaaattggacttaatctgcactatagatcaaatggatctaatagatatttacagaacatttcatccaacagctacagagaacacattcttttcttcagtacatggattgttctcaaggatggatca-tatgttaggtcacaaaacaagtcttagagcattcaaaaacttgaaatagtatcaagcatgttctctgaccacaatggaataaactagaaatcaataacaagagtaattttggaaactatacaaacacatggaaattaaacaatatgc-cctgaatgtccagtgggtcaatgaagaaattaaggaggaaattgaaaaatttctttaaacaaatg--ataatagaaacacaacataccaaaacctgtgggacacagtgaaaacaatgcagagagggtagctgatagctctaagtgtctacatcaaaaaagaagaaaaacttcaaataaataacctaaagatgcattttaaggaattagaaaagcaagcggaaa-ttgaaccc-aaaattagtagaag-aaaagaaataatgaaaatcaaagcagaaat-aaatgaatttgaaatgaagaaattagtacaaaagatcaataaaataaaagttggttttttaaaaagatgaaaacaatttgtaaaactttagccagactagtaagaaaaaagagagaagatccaaacagataaaattagagttgaagaagcagacattacaactgatactgcagaaattgaaaggatcattagtggctactgtgagcaactatatgctagtaaattggaaaatctagaagaaatgagtaaatttctagatacatacaaccttccaagattgaaccatgaagaaatccaaaatatgagcagaccaataacaagtagtgagatcaaagctgtgataaaaaggctaccatcaacaataagcccaggacctgaaggcttcactgctgaatctaccaaatatATATTTAAAtttttttatttccataggttatgggggaacaggtggtgattggttatatgagtaagttgtttagtggtgatttgtgagattt-ggtgcacccatcactcgagcagtattgaagttgattgaagaattaatattgctaaaatgtccatattacttaaagcaatagacaagtttaatgcaatccctatccaaataccaagtgtgcaagtctcatccaggttgctgtgactgccattaattcattcctttctatggatcagtagtattccat i panTro5.chr5 I 4057 C 0 s panPan2.chr5 20286493 6056 + 183735486 atacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaactgaataccctttatttccttctcctgcctaattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccag-tttttgtccattcagtatgatgttggctgtgggtttgtcatagatacatcttattat------------------------------tttgagatatgtcccatgaatacctaatttattgagag-tttttagcatgaatcgttgttgaattttttcaaaggccttttctgcatctattgagataatcatgtggtttttgtctttggttctgtttatatgatggattatgtttattgattttcatatgttgaaccagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctggattcggtttgccagtattttattgaggatttttgcatcaatgttcatcaaggatgttggtctaaaattatttatttAAAAAGCAGAATGGgagagatgttgagtaagatggccaaacagaaggcttcactgattgttccccctgcaaggacaccaatttaacaactatttaaacaacaacaaaaaaagcaagttcctgagaaccaaaaatcaggtgagcactcacagttcctgattttaacttcatatcactgaaagagccactgaaaagagtaggagacagtcttgaagtgctgatgccacccttcccgcatctcctatgccccaaacgtgcagcgcagagagagaatctatgtgcttgggagaaggagagcacagcaattgtgagacattgcattgaattcagtggtgccctatcacaacagaaagctaagccagctgaactcagttgaccccctactcatggaaggagtattttaactggccctagcccgaagggaatcacccatcccagctgtcagaactggatttctggcaagccttgccaccacaggataaagtgcttctgaaaccctaaataaacttaaaagacagtctaggcaacaaggactgtaactcctaggcaagtcctagtgctgaactgggctcagaaccagtggactggggggacacatgacctactgagacaacagccagggaggctaagggaatgcttgccccacccctctccccaatcccaggctgaacagctcgcagctccaaatgagaccccttccttccgcgtgaggatagagaagattaaagaggactttgtctttcatctaggatactggcatagccacagtaggaaaggacacctgtcagagtcaggaggccaactttcaggccctcgctcctggacaatatttctagacacaccctggactggaagggaacccactcccgtgaaaggaagggcccagtcctggcaggcctcatcccctgctgactaaagaacacttgatccctgaataaccagcagtgataccaaggtaatat-gccacaggccttgggtgataccctgagacttactggcttcaagtgagatttagcatattcccagctctggtggctatggggagagactccttcttcttgagaaaatcagagggaaaagtaaagggaactttggcttgcatcttgaagagcccttggcccttaagtgaacatcagtgggtaccagcttcgccatgagggtagagcacaagtgggatcttgggttccccagttctaggccttgggccttggatcgcatttctggacctgccctgggccagagggaagtccactgccctgaagatgagtcccagggcggggagcattcaccacaagctgactgaagagcccttggcccttaagtgaacatcagtggtagcctagcagtactccccatgggtctgtagtggtggcaatgggatgaggcccctctgcctttggaaaagggagggaagagtgggaaggactgtgttttgtggtttgagtgcgagctcagccacagtacaatagaacactgagtacacttctaaggttttaaactccagtctctggctcctggatggcatctgtggacttgcctggagattaggggaacttgccaccctgaagggaaggacacaaacctggctggctttgccatctgctgattgtagagccccaagtccttgagcaaacgtaggcagtagtcagcggtgattactggccttgagtgagacccagtgctatgctggcttcagatctgacctagcatagtcccagtcgtggccacaggggtgcttgtgtcacccaacctctagctctagatatctcagaacagagacagactccatttgtttgggagaaagaaagggacaagaacaagagtatctgttggtaatccagagaattcttctggatctttcccaagaccaccaacgtggtacctctttgagtttgtaagaaccacagtattactggacttgggatgccccataatgcagataaggcttagatcacaacactcaagtcccttcaaatactggaaagccttcccaagaaagagggctacaaacaagcccagactgtggagactgaaataaatatctaattcttcaatgcctagacactgatgaacatccacagcattgagaccatccaggaaaacatgatctcaccaaaggaactgaataaggcactagagaccaatcctggagaaatagagatatgtaacctttcagacaaagaattcaaaataggtgttttgaggaactcaaagaatttcaagacaatacagagaaagaattcagaatgctgttggataaactgaacaaagagattgacatgattagaaaaaatcaagcagaaattccagagttgaaatgcaatcgacataccaaagagtgcgtcagagtcttttaatgacaaaattgatcaaacggaagaaggaataagtgagcttgcagacaagctatttgaaaatacacagtcagaggagacaaaagaaaaaataataaaaaacaacaaagcatattttctacaggatgtagaaaatagtctcagaagggcaaatctaagagataaggcattaaagaggaggtagagaaagagatagaggtagaaagtttattgaaaaggataataacagagaaacttcccaagcctcaagaaagatatcaatatccaagtacaagaaggttatagaacaccaaacagatttaactcaaagaagcctacctcaagacatttaataaccaaactccccaaagtcaaggataaataaaggatcctaaaagtggcaagagaaaaaa-caaacaaacaaataacataccatagagcaccaatccatctggcagcagacttttcagtggaaatcttacaggccaggagagagtggcatgacatatttaaagtactgaagg-aaaaaacaccttttaccttagtagtatatctgaaaaatatccttcaaacacaaaggagaaatgaagaccctcccagacaaaggctgaaggatttcatcatcaccagacctatcctacaagaaatgctaaagggagtacttcaattttttaaaaaaa-ggatgttaatgagcaataagaagtcatctgaaggtgtaaaacttactggtaatggtaagtatatagaaaaacacagaatattataacactataactgtggtgtgtaatctacttctatcccaagaagaaagactaaatgaaccaataaaaaataactacaacagtttttcaagacacagtcaatacaataagatataaatagaaacaacaagataaaaagtggagggatacagcactttgggaggccaagatgggcagattacctgaggtcaggaattcgagagcagcctggccaacatggtgaaacccatctctactaaaaatacaaaaagtagccaggcttggtggcacaagcctgtaatcccagctactcgggaggttgagacaggagaattgcttgatcctgggagacggagattgcagtgagtcaacatcacgccactgtacttcagcctggccagcagagcaagactctgtctcaaataaataaataaataaa----agtggagggatgaagttaaggtgtagagcttttatcagttttctttttacttttttatgtaaacagtattaggttgttatcaacttaaaatgatggattataagatagtatttgcaagccttatgctaacctcaaataaaaaaatacaatagatatgcaaaacataagaagcaagaaattaaaccatattaccagagaaaatcaccttcactagatagaggacaggaagaaaagaaaaaaggaagagaagaccgcaaaacaaccagaaaacaaataacaaaatggaaggagtaagtctttatttatcaataataacattaatgcaaatggacgaaactctccaatcaaaagacatagaatggctgaatggatt-aaaaaaaccaagacccagtgatctgttgcctgcaataaatgcactttacttgtaaagataaatatagattgaaagtaaggggatggaaaaagacattccatgccaatggaaactaaaaaagagcaggatttgcaatacttagatcagaaaaaatagaattcaagacaaaacattaagaagagacaaagtaaggtcactgtataatgataaaggggtcaattcagcaggaggatatgattattgtaaatatatatgcatccaacactggggcacccagatatataaagcaaatattattagagctaaagagaaagattgattccaataaaataatagctggagtcttcaacaccacactttcagcattggacagattttctagagagaaaatcaaccaggaaaagttggacttaatctgcactatagatcaaatggatctaatagatatttacagaacatttcatccaacagctacagagaacacattcttttgttcagtacatggattgttctcaaggatggatca-tatgttaggtcacaaaacaagtcttagagcattcaaaaacttgaaatagtatcaagcatgttctctgaccacaatggaataaactagaaatcaataacaagagtaattttggaaactatacaaacacatggaaattaaacaatatgc-actgaatgaccagtgggtcaatgaagaaattaaggaggaaattgaaaaatttctttaaacaaatg--ataatagaaacacaacataccaaaacctgtgggacacagtgaaaacaatgcagagagggtagctgatagctctaagtgtctacatcaaaaaagaagaaaaacttcaaataaataacctaaagatgcattttaaggaattagaaaagcaagcggaaa-ttgaaccc-aaaattagtagaag-aaaagaaataatgaaaatcaaagcagaaat-aaatgaatttgaaatgaagaaattagtacaaaagatcaataaaataaaagttggttttttaaaaagatgaaaacaatttgtaaaactttagccagactagtaagaaaaaagagagaagatccaaacagataaaattagagttgaagaagcagacattacaactgatactgcagaaattgaaaggatcattggtggctactgtgagcaactatatgccagtaaattggaaaatctagaagaaatgagtaaatttctagatacatacaaccttccaagattgaaccatgaagaaatccaaaatatgagcagaccaataacaagtagtgagatcaaagctgtgataaaaaggctaccatcaacaataagcccaggacctgaaggcttcactgctgaatctaccaaatatATATTTAAAtttttttatttccataggttatgggggaacaggtggtgattggttatatgagtaagttgtttagtggtgatttgtgaggttt-ggtgcacccatcactcgagcagtattgaagttgattgaagaattaatattgctaaaatgtccatattacttaaagcaatagacaagtttaatgcaatccctatccaaataccaagtgtgcaagtctcatccaggttgctgtgaatgccattaattcattcctttctatggatcagtagtattccat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4773292 6055 - 13748885 atacagtcatgtcatctgc-aacagggacaatttgacttcctcttttcctaattgaataccctttatttctttctcctgcctaattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttccaagggaatgcttccagttttttgtccattcagtatgatattggctgtgggtttgtcatagatacctcttattat------------------------------tttgagatacgtcccatgaatacctaatttattgagagttttttagcatgaagggttgttgaattttgtcaaaggccttttctgcatctattgagataatcatgtggtttttgtctttggttctgtttatatgctggattatgtttattgattttcatatgttgaagcagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctggattcggtttgccagtattttattgaggatttttgcatcaatgttcatcaaggttgttggtctaaaattatttatttAAAAAGCAGAATGGgagagacgttgagtaagatggccaaatagaaggctccactgattgttccccctgcaaggacaccaagttaacaactatttaaacaacaaaaaaaaaagcaagttcctgagaaccaaaaatcaggtgagcactcacagttcccgattttaacttcatatcactgaaagagccactgaaaagagtaggagacagtcttgaagtgctgatgccacccctcccgcatctcctctgccccaaacgtgcagtgcagagagagactctatgtgcttgggagaaggagagcacagcaattgtgagacattgcattgaattcagtggtgccctatcacaacagaaagctaagccagctgaactcagttgaccccccactcatggaaggagtattttaaccggccctagccggaagggaatcacccatcccagctgtcagaactggagttctggcaagccttgccaccacaggataaagtgcttctgacaccctaaataaacttaaaaggcagtctaggcaacaaggactgtaactcctaggcaagtcctagtgctgaactgggctcagaaccagtggactggggggacacatgacctattgagacaacagccagggaggctaagggaatgcttgccccacccctctccccaatcccaggctgaacagctcgcagctccaaatgagaccccttccttccacgtgaggagagagaagattaaagaggactttgtctttcatctaggatactggcatagccacagtaggaaaggacacctgtcagagtcaggaggccaactttcaggccctcgctcctggacaatatttctagacacaccctggactggaagggaacccactcccttgaaaggaaggggccagtcctggtaggcctcatcccctgctgactaaagaacacttgatccctgaataaccagcagtgataccaaggtaatatggccacaggccttgggtgagaccctgagacttactggcttcaagtgagatttagcatattcccagctctggtggctatggggagagactccttcttcttgagaaaagcagagggaaaagtaaagggaactttggcttgcatcttgaagagcccttggctcttaagtgaacatcagtgggtaccagcttggccatgagggtagagcagaggtgggatcttgggttccccagttctaggccttgggccttggatcgcatttctggacctgccctgggccagagggaagtctactgccctgaagatgagtcccagggcagggagcattcaccacaagctgactgaagagcccttggcccttaagtgaacatcagtggtagcctagcagtactccccatgggtctgtagtggtggcaatgggatgaggcccctctgcctttggaaaagggagggaagagtgggaaggactgtgttttgtggtttgagtgccagctcagccacagtacagtagaacactgagtacaattctaaggttttaaactccagtctctggctcctggatggcatctgtagacttgcctggagattaggggaacttgccaccctgaagggaaggacacaaacctggctggctttgccatgtgctgattgtagagccccaagtccttgagcaaacataggcagtagtcagcggtgatcactggccttgagtgagacccagtgctatgctggcttcaggtctgacccagcatagtcccagtcgtgaccacaggggtgcttgtgtcacccaacctctagctctagatatctcagaacagagacagactccatttgtttgggagaaagaaagggacaagaacaagagtatctgttggtaatccagagaattcttctggatcttacccaagaccaccaaggtggtacctctttgagtttgtaagaaccacagtattactggacttggggtgccccataatgcagataaggcttagatcacaacactcaagtcccttcaaatactggaaagccttcccaagaaagagggctacaaacaagcccagactgtggagactaaaataaatatctaattcttcaatgcccagacactgatgaacatccacagcattgagaccatccaggaaaacatgacctcaccaaaggaactgaataaggcactagagaccaatcctggggaaatagagatatgtaacctttcagacaaagaattcaaaataggtgttttgaggaactcaaagaatttcaagacaatacagagaaggaattcagaatgctgttggataaactgaacaaagagattgacatgattagaaaaaatcaagcagaaattccagagttgaaatgcaatcgacataccaaagagtgcatcagagtcttttaatgacaaaattgatcaaacggaagaaggaataagtgagcttgcagacaagctatttgaaaatacacagtcagaggagacaaaag-aaaaataataaaaaacaacaaagcatattttctacaggatgtagaaaatagtctcagaagggcaaatctaagagataaggcattaaagaggaggtagagaaagagatagaggtagaaagtttattgaaaaggataataacagagaaacttcccaagcctcaagaaagatatcaatatccaagtacaagaaggttatagaacaccaaacagatttaactcaaagaag-ctacctcaaggcatttaataaccaaactccccaaagtcaaggataaataaaggatcctaaaagcggcaagagaaaaaaacaaacaaacaaataacataccatagagcaccagtccatctggcagcagacttttcagtggaaatcttacaggccaggagagagtggcatgacatatttaaagtactgaaggaaaaaaacaccttttaccttagtagtatatctgaaaaatatccttcaaacacaaaggagaaatgaagactgtctcagacaaaggctgaaggatttcatcatcaccagacctatcctacaagaaatgctaaagggagtacttcaatttttttaaaaaaaggatgttaatgagcaataagaagtcatctgaaggtgtaaaacttactggtaatggtaagtatatagaaaaacacagaatattataacactataactgtggtgtgtaatctacttctatcccaagaagaaagactaaatgaaccaataaaaagtaactacaacagtttttcaagacacagtcaatacaataagatataaatagaaacaacaagataaaaagtggagggatacagcactttgggaggccaagatgggcagattacctgaggtcaggaattcgagaccagcctggccaacatggtgaaacccgtctctactaaaaatacaaaaactagccaggcgtggtggcacaagcctgtaatcccagctactcgggaggttgagacaggagaattgcttgatcctgggagacagaggttgcagtgagtcaacatcacgccactgtacttcagcctggctggcagagcaagactctgtctcaaataaataaataaa--------agtggagggatgaagttaaggtgtagagcttctatcagttttctttttacttttttatgtaaacagtattaggttgttatcaacttaaaatgatggattataagatagtatttgcaagccttatgctaacctcaaataaaaaaatacaatagatatgcaaaacataagaagcaagaaattaaaccatattaccagagaaaatcaccttcactagatagaggataggaagaaaagaaaaaaggaagagaagaccacaaaacaaccagaaaacaaataacaaaatggaaggagtaagtctttatttatcaataataacattaatgcaaatggatgaaactctccaatcaaaagacatagaatggctgaatggatt-aaaaaaaccaagacccagtgatctgttgcctgcaataaatgcactttacttgtaaacataaatatagattgaaagtaaggggatggaaaaagacattccatgccaatggaaactaaaaaagagcaggatttgcaatacttagatcagaaaaaatagaattcaagacaaaacattaagaagagacaaagtaaggtcactgtataatgataaaggggtcaattcagcaggaggatatgattattttaaatatatatgcatccaacactggggcacccagatatataaagcaaatattattagagctaaagagaaagatcgattccaataaaataatagctggagacttcaacaccacactttcagcattggacagattttctagagagaaaatcaaccaagaaaaattggacttaatctgcagtatagatcaaatggatctaatagatatttacagaacgtttcatccaacagctacagaaaacacattcttttcttcagtacatggatcgttctcaaggatggatca-tatgttaggtcacaaaacaagtcttagagcattcaaaaacttgaaatagtatcaagcatgttctctgaccacaatggaataaactagaaatcaataacaagagtaattttggaaactatacaaacgcatggaaattaaacaatatgc-cctgaatgaccagtgggtcaatgaagaaattaaggagaaaattgaaaaatttctttaaacaaatg--ataatagaaacacaacataccaaaacctgtgggacacagtgaaaacaatgcagagagggtagctgatagctctaagtgtctacatcaaaaaagaagaaaaacttcaaataaataacctaaagatgcattttaaggaattagaaaagcaagcggaaa-ttgaaccc-aaaattagtagaag-aaaagaactaatgaaaatcaaagcagaaat-aaatgaatttgaaatgaagaaattaatacaaaagatcaataaaat-aaagttggttttttaaaaagatgaaaacaatttgtaaaactttagccagactagtaagaaaaaagagagaagatccaaacaaataaaattagagttgaagaagcagacattacaactgatactgcagaaattgaaaggatcattagtggctactgtgagcaactatatgccagtaaattggaaaatctagaagaaatgagtaaatttctagatacatacaaccttccaagattgaaccatgaagaaatccaaaatatgaacagaccaataacaagtagtgagatcaaagctgtaataaaaaggctgccatcaacaataagcccaggacctgaaggcttcactgctgaatctaccaaatatATATTTAAAtttttttatttccataggttattggggaacaggtggtgattggttacatgagtaagttgtttagtggtgatttgtgagattttggtgcacccatcactcgagcagtattgaagttgattgaagaattaatattgctaaaatgtccatattacttaaagcaatagacaagtttaatgcaatccctatccaaataccaagtgtgcaagtctcatccaggttgctgtgaatgccattaagtcattcctttctatggatgagtagtattccat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53810029 6086 - 163208435 atacaatcatgtcatctgcaaacagggacaatttgacctcctcttttcctaattgaatgccctttatttccttcacctgcctgattgccctggccagaacttccaacactatgttgaatagtagtggtgagagaggtcatccctgtcttgtgccagttttcaaaggcaatgcttccag-tttttgtccattcagtatgatattggctgtgggtttgtcatagatagctcttattatctatagataatatagatagctctcatatcatttgagatatgtcccatgaatacctaatttatggagag-tttttagcatgaagggttgttgaattttgtcaaaggccttttctgcatctattgagataatcatgtggtttttgtctttggttctgtttatatgctggattacatttattgatttttgtatgttgaaccagccttgcatcccagggatgaagcccacttgatcatggtgtgtaagctttctgatgtgctgctggattcagtttgccagcattttattgaggatttttgcgtcagtgttcatcaaggatattggtctaaaattatttatttAAAAAGCAGAATGGgagagatgttgagtaagatggccaaatagaaggctccactgattgttccccctgcaaggacaccaatttaacaactattttaacaacaacaacaaaagcacgttcatgagaaccaaaaatcaggtgagcactcacagttcctgattttaacttcacatcactgaaagagccactgaaaagagtaggagacagtcttgaagtgctgatgccacccctcccgcatctcctatgccccaaatttgcagcgcagagaaagaatctatgtgcttgggagaaggagagcacagcaattgtgagacattgcattgaattcagtggtgctctatcacaacagaaagctaagccagctgaactcagttgacccccgactcatggaaggagtattttaaccggccctagccagaagggaatcacgcatcccagctgtcagaactggagttctggcaaggcttgctaccacaggataaagtgcttccgaaaccctaaataaacttaaaaggcagtctaggcaacaaggactgtaactcctaggcaggtcctagtgctgaactgggctcagaagcagtggactgagggggcacatgacctactgagaaaacagccagggaggctaagggaatgcttgcaccacccgtctccccagtcccaggctgaacagctcgcagctccagatgagaccccttccttccgcgtgaggagagagaagattaaagaggactttgtctttcatctaggatactggcacagccacagtaggaaaggacaccagtcagagtcaggaggccaactttcaggccctagctcctggacaatatttctagacacaccctggactggaaggaaacccactcccttgaaaggaagggcccagtcctggcacgcctcatcccctgctgactaaagaacacttgatccctgaataaccagcagtgataccaaggtaatgt-gccacaggccttaggtgagaccctgagacttactggcttcaagtgagattcagcatattcccagctctggtggctatggggagagactccttcttcttgggaaaagcagaggaaaaagtaaagggaactttggcttgcaccttgaggagcccttggcccttaagtgaacatcagtgggtaccagcttggccatgagggtagagcacaagtgggatcttgggttccccagttctaggccttgggccttggatggcatttctggacctgccctgggccagagggaagtccactgccctgaagatgagtcccagggcaggcagcattcaccacaagctgactgaagagcccatggcccttaagtgaacatcagtggtagcctagcagtactccccatgggtctgtagtggtggcagtgggatgagaaccctctgcctttggaaaagggagggaagagtgggaaggactgtgttttgtggtttgagtgccagctcagccacagtacagtagaacactgagtatacttctaaggttttaaactccagtctctggctcctggatggcatctgtggacttgcctggagattaggggaacttgccaccctgaagggaaggacacaaacctggctggctttgccatgtgctgattgtagagctccaagtccttgagcaaacataggcactagtcagcagtgaccactggccttgagtgagacccagtgctatgctggcttcaggtctgacccagcacagtcccagttgtggccacaggggtgcttgtgtcacccaacctctagctctaggcatctcagaacagagacagactccatttgtttgggagaaagaaagggacgagaacaagagtatctgttggtaatccagagaattcttctggatcttacccaagactaccaaggtggtacctctttgagtttgtaagaaccacagtattactggacttggggtgccccataatgcagataaggcttagatcacaacactcaagtcccttcaaatactggaaagccttcccaagaaagagggctacaaacaagcccagactgtggagactaaaataaatatctaattcttcaatgcccagacactgatgaacatccacagcattgagaccatccggggaaacatgacctcaccaaaggaactaaataaggcactagagaccaatcctggggaaacagagatatgtaacctttcagacaaagaattcaaaataggtgttttgaggaactcaaagaatttcaagacaatacagagaaggaattcagaatgctgttggataaactgaacaaagagattgacatgattagaaaaaatcaagcagaaattccagagttgaaatgcaatcgacataccaaagactgcatcagagtcttttaatgacaaaattgatcaaactgaagaaagaataagtgagcttgcagacaagctatttgaaaatacgcagtcagaggagacaaaagaaaaaataataaaaaacaacaaagcata---cctacaggatgtagaaaatagtctcagaagggcaagtctaagagataaggcattaaagaggaggtggagaaagagatagaggtagaaagtttattgaaaaggataataacagagaaacttcccaagcctcaagaaagatatcagtatccaagtacaagaagatcatagaacaccaaacagattgaactcaaagaagcctacctcaaggcatttaacaaccaaactccccaaagtcaaggataaataaaggattctaaaagcggcaagaggaaaaaacaaacaaacaaataacataccatagagcaccagtccatccggcagcagacttttcagtggaaatcttacaggccaggagagagtggcatgacatatttaaagtactgaagg-aaaaaacaccttttaccttagtagtatatctgaaaaatatccttcaaacacaaaggagaaatgaagactgtcccagacaaaggttgaaggatttcatcatcaccagacctatcctacaagaaatgctaaagggagtacttcaattttttaaaaaaa-ggatgttaatgagcaataagaagtcatctgaaggtgtaaaacttactggtaatggtaagtatatagaaaaacatagaatattataacactataactgtggtgtgtaatctacttctatcccaagaaggaagactaaatgaaccaatcaaaaataactacaacagtttttcaagacacagtcaatacaataagatataaatagaaacaagaagataaaaagtagagggatacagcactttgggaggccaagatgggcagattacctgaggtcaggaattcgagaacagcctcgccaacctggtgaaacccgtctctactaaaaatacaaaaactagccaggcgtggtggcacaagcctgtaatcccagctactcgggaggttgaggcaggagaattgcttgatcctgggagatggaggttgcagtgagtcaacatcatgccactgtacttcagcctggccgacagagcaagactctgtctcaaataaataaataaatgaa----agtggagggatgaagttaaggtgtagagcttttatcagttttctttttacttttttatgcaaacagtattaggttgttatcaacttaaaatgatagattataagatagtatttgcaagccttatgctaacctcacataaaaaaatacaatagatatgcaaaacataagaagcaagaaattaaaccatattaccagagaaaaccaccttcactaaatagaggacaggaagaaaggaaaa----aggaaaagaccacaaaacaaccagaaaacaaataacaaaatggaaggagtaagtctttatttatcgataataacattaatgcaaatggactaaactctccaatcaaaagacatagaatggctcaatggattaaaaaaaaccaagacccagtgatctgctgcctgcaataaatgcactttacttgtaaagataaatatagactgaaagtaaggggatggaaaaagacattccgtgccaatggaaaccaaaaaagagcaggattagcaatacttagatcagaaaaaatagaattcaagacaaaacattaagaagagacaaagtaaggtcactgtataatgataaaggggtcaattcagcaggaggatatgattattgtaaatatatatgcatccaacactggggcacccagatacataaagcaaatattattagagctaaagagaaagatagattccaatacaataatagctggagacttcaacaccccactttcagcattggacagattttctagagagaaaatcaaccaagaaacattggacttaatctgcactatagatcaaatgaatctaatagatatttacagaacatttcatccaacagctacagaaaacacattcttttcttcagtacatggatcgttctcaaggatggatca-tatgttaggtcacaaaacaagtcttagaacattcaaaaacttgaaataatatcaagcatgttctctgaccacaatggaataaactagaaatcaacaacaagaggaattttggaaactatacaaacacatggaaattaaacaatatgctcctgaatgaccagtgggtcaatgaagaaattaaggaggaaattgaaaaatttctttaaacaaatgatataatagaaacacaacataccaaaacctatgggacacagtgaaaacaatgcagagagggcagctgatagctctaagtgtctacatcaaaaaagaagaaaaacttcaaataaataacctaaagatgcattttaaggaattagagaagcaagaggaaatttgaacccaaaaattagtagaagaaaaagaaataataaaaatcaaagcagaaataaaatgaatttgaaatgaagaaattaatacaaaagatcaataaaataaaagttggttttttaaaaagacgaaaacaatttgtaaaactttagccagactagtaagaaaaaaga---aagatccaaaaagataaaattagagttgaaaaagcagacattacaactgatactgcagaaattgaaaggatcattagtggctactgtgagcaactatatgccagtaaattggaaaatctagaagaaatgagtaaatttctagatacatacaaccttccaagattgaaccatgaagaaatccaaaatatgaacagaccaataacaagtagtgagatcaaagctgtaataaaaagcctgctatcaacaataagcccaggacccgaaggcttcactgctgaatctaccaaatatATATTTAAAtttttttatttccataggttattggggaacaggttgtgattggttacatgagtaagttgtttagtggtgatttgtgagattttggtgcacccatcactcaagcagtatTGAAGtggattgaagaattaatattgctaaaatgtccatattacttaaagcaatagacaagtttaatgcaattcctatccagataccaaGTGTGcaagtctcacccaggttgctgtgaacgccattaattcattcctttctatggatgagtagtattccat i nomLeu3.chr2 C 0 C 0 e canFam3.chr3 14322655 0 + 91889043 C e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I e aotNan1.NW_018506370v1 1424391 6047 - 15889662 I e cebCap1.NW_016107830v1 347176 6318 - 1393929 I e saiBol1.JH378106 44983467 6293 + 71252344 I e calJac3.chr2 112537767 3709 + 204313951 I e colAng1.NW_012115488v1 7717244 6211 - 21726897 I e manLeu1.NW_012103732v1 2011200 15645 + 5179401 I e chlSab2.chr4 1900159 6162 - 91010382 I e cerAty1.NW_012002401v1 1630060 6047 + 27333823 I e macNem1.NW_012011400v1 1161835 5939 - 8785636 I e macFas5.chr6 87938929 6046 - 181584905 I e rheMac8.chr6 87834509 6049 - 180051392 I a score=252222.000000 s hg38.chr5_GL383530v1_alt 47443 446 + 101241 tatatatatataatgttttatatatTACATAATATTTTTATATataatatttcatatatattttatatatat---------------------atcattttctttatccactcattaaatgatgggcttttgattggttccacatttttgcaattgagaattgtgatgctataaacatgcatgtgtaggtatctttttcgtataattacttcttttacactgcactcaatttgtagtcttttatccctca----------------------------------------------cccctttccaccctttcctcctgagtccccaaagtccattgcatcattcttatgcctttgcatcctcatagcttagctcccacatataagtgagaacatatgatgtttggttttccattcctgagttacttcacttagaataatagtctccagtctcacccaggttgctgtgaatgccattaattcattcctttctatggatgagtagtattccatt s panTro5.chr5 20280253 511 + 181907262 tttatatatataatgttttatatattacataatatttttatatataatatttcatatatattttatatatatcatattttatat--tatatatatcattttctttatccactcattaaatgatgggcttttgattggttccacatttttgcaattgagaattgtgatgctataaacatgcatgtgtaagtatctttttcgtataattacttcttttacactgcactcaatttgtagtcttttatccctcaATTACTTcagttacactgcactcaatttgtagtcttttatccctcacccctttccaccctttcctcctgagtccccaaagtccattgcatcattcttatgcctttgcatcctcatagcttagctcccacatatgagtgagaacatatgatgtttggttttccattcctgagttacttcacttagaataataggctccagtctcacccaggttgctgtgaatgccattaattcattcctttctatggatgagtagtattccatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20292549 513 + 183735486 tttatatatataatgttttatatattacataatatttttatatataatatttcatatatattttatatatatcatattttatattatatatatatcattttctttatccactcattaaatgatgggcttttgattggttccacatttttgcaattgagaattgtgatgctataaacatgcatgtgtaagtatctttttcgtataattacttcttttacactgcactcaatttgtagtcttttatccctcaATTACTTcagttactctgcactcaatttgtagtcttttatccctcacccctttccaccctttcctcctgagtccccaaagtccattgcatcattcttatgcctttgcatcctcatagcttagctcccacatatgagtgagaacatatgatgtttggttttccattcctgagttacttcacttagaataataggctccagtctcacccaggttgctgtgaatgccattaattcattcctttctatggatgagtagtattccatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4779347 511 - 13748885 tatatatatataatgttttatatattatataatatttttatatataatatttcatatatattttatgtatatcatattttatgt--tatatatatcattgtctttattcactcattaaatgatgggcttttgattgtttccacatttttgcaattgagaattgtgatgctataaacatgcatgtgtaagtatctttttcgtataattacttcttttacactgcactcaatttgtagtcttttatccctcaATTACTTcagttacactgcactcaatttgtagtcttttatccctcacccctttccaccctttcctcctgagtccccaaagtccattgcatcattcttatgcctttgcatcctcatagcttagctcccagatatgagtgagaacatatgatgattggttttccactcctgagttacttcacttagaataatagtctccagtctcacccaggttgctgtgaatgccattaattcattcctttctatggatgagtagtattccatt i gorGor5.CYUI01014999v1 C 0 C 0 e canFam3.chr3 14322655 0 + 91889043 C e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I e aotNan1.NW_018506370v1 1424391 6047 - 15889662 I e cebCap1.NW_016107830v1 347176 6318 - 1393929 I e saiBol1.JH378106 44983467 6293 + 71252344 I e calJac3.chr2 112537767 3709 + 204313951 I e colAng1.NW_012115488v1 7717244 6211 - 21726897 I e manLeu1.NW_012103732v1 2011200 15645 + 5179401 I e chlSab2.chr4 1900159 6162 - 91010382 I e cerAty1.NW_012002401v1 1630060 6047 + 27333823 I e macNem1.NW_012011400v1 1161835 5939 - 8785636 I e macFas5.chr6 87938929 6046 - 181584905 I e rheMac8.chr6 87834509 6049 - 180051392 I e nomLeu3.chr2 53816115 0 - 163208435 C a score=734061.000000 s hg38.chr5_GL383530v1_alt 47889 829 + 101241 atttat-atgtatataaaatatatattttatctaatatatatatatttaattttctttatccactcattaaatgatgggcttttgattggttccacattttttgcaattgagaattgcggtgctataaacatgcatgtgcaagtatctttttcgtataattacttcttttcctctgggtagacacctagtagtgggactgctggatcaaatggtagttctacttttagttctttaaggaatctccatacttttccacagtggctgtactagtttacattcccaccagtagtgtaa---------ctgttcaccgcattcacgccaacatc-ttttatttttttaattttttgattatggccattcttgtaagagtaaagtggtattgcattgtggttttgatttgcatttctctaatcattagtgatgttgagcattttttatatatttgtggctcatttgtatatcttctcttaagaattgtcaattcatgttcttagcccactttttgatgcgattgtttgctttttcttgataatttgagttcattgtagattctagatattagtcctttgtcagatgtatagtgaatctaccaaatatttaaagaagaactaataccaatcttattcaagctattttgaaaaaggaagaggagggaatacatccaaactcattatatgaggccagtattacctgataccaaaatcagacaaaggcacataaaaaa-tcactacaggccaatatatttgatgaaaattgacataaaaatcttcaagaaaatattagcaaactgaattcaacaatacattaaaaagatcattcatcatgaccaagtgag s panTro5.chr5 20280764 839 + 181907262 atttat-gtgtatataaaatatatattttatctaatatatatatatttaattttctttatccactcattaaatgatgggcttttgattggttccacattttttgcaattgagaattgcgatgctataaacatgcatgtgcaggtatctttttcgtataattacttcttttcctctgggtagacgcctagtagtgggactgctggatcaaatggtagttctacttttagttctttaaggaatctccatacttttccacagtggctgtactagtttacattcccaccagtagtgtagaagtgttccctgttcaccgcattcacgccaacatc-ttttttttttttaattttttgattatggccattcttgtaagagtaaagtggtattgcattgtggttttgatttgcatttccctaatcattagtgatgttgagcattttttatatatttgttgctcatttgtatatcttcttttaagaattgtcaattcatgttcttagcccactttttgttgcgattgtttgctttttcttggtaatttgagttcattgtagattctagatattagtcctttgtcagaggtatagtgaatctaccaaatatttaaagaagaactaataccaatcttattcaagctattttgaaaaaggaagaggagggaatacatccaaactcattatatgaggccagtattacctgataccaaaatcagacaaaggcacataaaaaaatcactacaggccaatatatttgatgaaaattgacataaaaatcttcaagaaaatattagcaaactgaattcaacaatacattaaaaagatcattcatcatgaccaagtgag i panTro5.chr5 C 0 C 0 s panPan2.chr5 20293062 839 + 183735486 atttat-gtgtatataaaatatatattttatctaatatatatatattaaattttctttatccactcattaaatgatgggcttttgattggttccacattttttgcaattgagaattgcggtgctataaacatgcatgtgcaagtatctttttcgtataattacttcttttcctctgggtagacgcctagtagtgggactgctggatcaaatggtagttctacttttagttctttaaggaatctccatacttttccacagtggctgtactagtttacattcccaccagtagtgtagaagtgttccctgttcaccgcattcacgccaacatc-ttttttttttttaattttttgattatggccattcttgtaagagtaaagtggtattgcattgtggttttgatttgcatttccctaatcattagtgatgttgagcattttttatatatttgttgctcatttgtatatcttcttttaagaattgtcaattcatgttcttagcccactttttgttgcgattgtttgctttttcttggtaatttgagttcatcgtagattctagatattagtcctttgtcagaggtatagtgaatctaccaaatatttaaagaagaactaataccaatcttattcaagctattttgaaaaaggaagaggagggaatacatccaaactcattatatgaggccagtattacctgataccaaaatcagacaaaggcacataaaaaaatcactacaggccaatatatttgatgaaaattgacataaaaatcttcaagaaaatattagcaaactgaattcaacaatacattaaaaagatcattcatcatgaccaagtgag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4779858 840 - 13748885 atttat-atgtatataaaatatatattttatctaatatatatatatttaattttctttatccactcattaaatgatgggcttttgattggttccacattttttgcaactgagaattgcagtgctataaacatgcttgtgcaagtatctttttcgtataattacttcttttcctctgggtagacacctagtagtgggactgctggatcaaatggtagttctacttttagttctttaaggaatctccatacttttccacagtggctgtactagtttacattcccaccagtagtgtagaagtgttccctgttcactgcattcacgccaacatctttttttttttttaattttttgattatggccattcttgtaagagtaaagtggtattgcattgtggttttgatttgcatttccctaatcattagtgatgttgagcattttttatatatttgttgctcatttgtatatcttcttttaagaattgtcaattcatgttcttagcccactttttgatgcgattgtttgctttttcttgataatttgagttcattgtagattctagatattagtcctttgtcagatgtatagtgaatctaccaaatatttaaagaagaactaataccaatcttattcaagctattttgaaaaaggaagaggagggaatacaccaaaactcattatatgaggccagtattaccttataccaaaatcagacaaaggcacataaaaaaatcactacaggccaatatatttgatgaaaattgacataaaaatcttcaagaaaatattagcaaactgaattcagcaatacattaaaaagatcattcaccatgaccaagtgag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53816115 837 - 163208435 atttataaggtatataaaatatatattttatctaatatatatat----aattttctttatccactcattatatgatgggcttttggttggttccacattttttgcaattgagaattgtggtgctgtaaacatgcatgtacaagtatctttttcgtataattacttcttttcctctgggtagacacctagtagtgggattgctggatcaaatggtagttctacttttagttctttaaggaatctccatacttttctatagtggctgtactagtttacattcccaccagtagtgtagaagtgttccctgttcaccgcattcatgccaacatctatttttttggggggttttattattatgaccattcttgtaggactaaggtggtattgcattgtggttttgatttgcatttccctaatcattagtgatgttgagcattttttatatatttgttgctcgtttgtatatcttcttttaagaattgtcaattcatattcttagcccactttttgatgcgattgtttgctttttcttgataatttgagttcattgtagattctagatattagttctttgtcagatgtatagTAAAtctaccaaatatttaaagaagaactaataccaatcttattcaagctattttggaaaaggaagaggagggaatacatccagactcattatatgagtccagtattacctgataccaaaatcagacaaaggcacataaaaaaatcactacaggccaatgtatttgatgaaaatttatataaaaatcttcaagaaaatattagcaaactgaattcaacaatacattaaaaagatcattcatcatgatcaagtgag i nomLeu3.chr2 C 0 C 0 e canFam3.chr3 14322655 0 + 91889043 C e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I e aotNan1.NW_018506370v1 1424391 6047 - 15889662 I e cebCap1.NW_016107830v1 347176 6318 - 1393929 I e saiBol1.JH378106 44983467 6293 + 71252344 I e calJac3.chr2 112537767 3709 + 204313951 I e colAng1.NW_012115488v1 7717244 6211 - 21726897 I e manLeu1.NW_012103732v1 2011200 15645 + 5179401 I e chlSab2.chr4 1900159 6162 - 91010382 I e cerAty1.NW_012002401v1 1630060 6047 + 27333823 I e macNem1.NW_012011400v1 1161835 5939 - 8785636 I e macFas5.chr6 87938929 6046 - 181584905 I e rheMac8.chr6 87834509 6049 - 180051392 I a score=3025.000000 s hg38.chr5_GL383530v1_alt 48718 3 + 101241 att s panTro5.chr5 20281603 3 + 181907262 att i panTro5.chr5 C 0 C 0 s panPan2.chr5 20293901 3 + 183735486 att i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4780698 3 - 13748885 att i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53816952 3 - 163208435 att i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87944975 3 - 181584905 ata i macFas5.chr6 I 6046 C 0 e canFam3.chr3 14322655 0 + 91889043 C e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I e aotNan1.NW_018506370v1 1424391 6047 - 15889662 I e cebCap1.NW_016107830v1 347176 6318 - 1393929 I e saiBol1.JH378106 44983467 6293 + 71252344 I e calJac3.chr2 112537767 3709 + 204313951 I e colAng1.NW_012115488v1 7717244 6211 - 21726897 I e manLeu1.NW_012103732v1 2011200 15645 + 5179401 I e chlSab2.chr4 1900159 6162 - 91010382 I e cerAty1.NW_012002401v1 1630060 6047 + 27333823 I e macNem1.NW_012011400v1 1161835 5939 - 8785636 I e rheMac8.chr6 87834509 6049 - 180051392 I a score=4095.000000 s hg38.chr5_GL383530v1_alt 48721 1 + 101241 t s panTro5.chr5 20281606 1 + 181907262 t i panTro5.chr5 C 0 C 0 s panPan2.chr5 20293904 1 + 183735486 t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4780701 1 - 13748885 t i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53816955 1 - 163208435 t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87840558 1 - 180051392 t i rheMac8.chr6 I 6049 C 0 s macFas5.chr6 87944978 1 - 181584905 t i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1167774 1 - 8785636 t i macNem1.NW_012011400v1 I 5939 C 0 s cerAty1.NW_012002401v1 1636107 1 + 27333823 t i cerAty1.NW_012002401v1 I 6047 C 0 s chlSab2.chr4 1906321 1 - 91010382 t i chlSab2.chr4 I 6162 C 0 e canFam3.chr3 14322655 0 + 91889043 C e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I e aotNan1.NW_018506370v1 1424391 6047 - 15889662 I e cebCap1.NW_016107830v1 347176 6318 - 1393929 I e saiBol1.JH378106 44983467 6293 + 71252344 I e calJac3.chr2 112537767 3709 + 204313951 I e colAng1.NW_012115488v1 7717244 6211 - 21726897 I e manLeu1.NW_012103732v1 2011200 15645 + 5179401 I a score=4944170.000000 s hg38.chr5_GL383530v1_alt 48722 1074 + 101241 atcccagggatgtgaggatggttctacattcacaaatcagtcaatgtgataaatcaaaacaacagaatgaagaacaaaa---accatatgatcatttcaatgaatgctgaaaaagcatttgataaaactcaacatcccttcatgataaaatccccaaaaagtaactgggtatagaaggaacatacctcaacacaatcaaagacatatatgacagacccatagctggcatcatattgaatggggaaaagctgaaagcctttcctctaagatcttgaacatgacaaggatacccactttcaccaccgttattcaacatagtactggaagtcttagctagagaaatcagacgagaaagaaataaaggccatccaaactggaaaggaagaaatcaaattatccttgtttgcagatgatgtgatcttatatttcaaaaaacctaaagactcacca-aaaaaactactagaacagataagcaaattcagcaaagttgtaaaatacaaaatcgacatacaaaaatcagtagcatttccatgtgccaacagtgaacaatctgaaaaggaaatcaagaaagtaatcttgtttacagtagttac-----aaataaaataaaatctattaggatttaacgaaagacgtgaaagatctctataatgaaaactaaaatatattg--ataagaaattgaagaggacacacaaaaactggaaagatactccatgttcatggattgaagaattaatattgctaaaatgtccatattacctaaagcaacagacaagtttaatgcaatccctatccaaataccaatgatttggatctaccaatctatttcttattcacagaaatag-aaaaaacaattctaaaatttatataaaaccacaaaatatcctgg-tagccaaagctatcctaagcaaaaagaacaaaactggaggaatcacattacctgactttaaattatactacaaagctatagtaaccaaaatggcatggtactggcataaaaacaaacacataaatcagtggaacagaatagataacccagagataaatccatacatatacagtgaacttatttttgacagacg s panTro5.chr5 20281607 1075 + 181907262 atcccagggatgtgaggatggttctacattcacaaatcagtcaatgtgatacatcagaacaacagaatgaagaacaaaa---accatatgatcatgtcaatgaatgctgagaaagcatttgataaaactcaacatctcttcatgataaaaaccccaaaaagtaactgggtatagaaggaacatacctcaacacaatcaaagacatatatgacagacccatagctggcatcatattgaatggggaaaagctgaaagcctttcctctaagatcttgaacatgacaaggatacccactttcaccaccgttattcaacatagtactggaagtcttagctagagaaatcagatgagaaagaaataaaggccatccaaactggaaaggaagaaatcaaattatccttgtttgcagatgatgtgatcttatatttcaaaaaacctaaagactcacca-aaaaaactactagaacagataagcaaattcagtaaagttgtaaaatacaaaatcgacatacaaaaatcagtagcatttccatgtgccaacagtgaacaatctgaaaaggaaataaagaaagtaatcttgtttacagtagttac-----aaataaaataaaatctattaggatttaaccaaagacgtgaaagatctctataatgaaaactaaaatatattg--ataagaaattgaagaggacacacagaaactggaaagatactccatgttcatggattgaagaattaatattgctaaaatgtccatattacctaaagcaatagacaagtttaatgcaatccctatccaaataccaatgatttggatctaccaatctatttcttattcacagaaatag-aaaaaacaattctaaaatttatataaaaccacaaaacatcctgaatagccaaagctatcctaagcaaaaagaacaaaactggaggaatcacattacctgactttaaattatactacaaagctatagtaaccaaaatggcatggtactggcataaaaacaaacacataaatcagtggaacagaatagataacccagagataaatccatacatatacagtgaacttaattttgacagagg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20293905 1075 + 183735486 atcccagggatgtgaggatggttctacattcacaaatcagtcaatgtgatacatcagaacaacagaatgaagaacaaaa---accatatgatcatgtcaatgaatgctgaaaaagcatttgataaaactcaacatctcttcatgataaaaaccccaaaaagtaactgggtatagaaggaacatacctcaacacaatcaaagacatatatgacagacccatagctggcatcatattgaatggggaaaagctgaaagcctttcctctaagatcttgaacatgacaaggatacccactttcaccaccgttattcaacatagtactggaagtcttagctagagaaatcagacgagaaagaaataaaggccatccaaactggaaaggaagaaatcaaattatccttgtttgcagatgatgtgatcttatatttcaaaaaacctaaagactcacca-aaaaaactactagaacagataagcaaattcagtaaagttgtaaaatacaaaatcgacatacaaaaatcagtagcatttccatgtgccaacagtgaacaatctgaaaaggaaataaagaaagtaatcttgtttacagtagttac-----aaataaaataaaatctattaggatttaaccaaatacgtgaaagatctctataatgaaaactaaaatatattg--ataagaaattgaagaggacacacaaaaactggaaagatactccatgttcatggattgaagaattaatattgctaaaatgtccatattacctaaagcaatagacaagtttaatgcaatccctatccaaataccaatgatttggatctaccaatctatttcttattcacagaaatag-aaaaaacaattctaaaatttatataaaaccacaaaatatcctgaatagccaaagctatcctaagcaaaaagaacaaaactggaggaatcacattacctgactttaaattatactacaaagctatagtaaccaaaatggcatggtactggcataaaaacaaacacataaatcagtggaacagaatagataacccagagataaatccatacatatacagtgaacttaattttgacagagg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4780702 1071 - 13748885 atcccagggatgtgaggatggttctgcattcacaaatcagtcaatgtgatacatcaaaacaacagaatgaagaacaaaa---accatatgatcatttcaatgaatgctgaaaaagcatttgataaaactcaacatcccttcatgataaaaacccc---aagtaactgggtatagaaggaacatacctcaacacaatcaaagacatatatgacagacccatagctggcatcatattgaatggggaaaagctgaaagcctttcctctaagatcttgaacatgacaaggatacccactttcaccaccgtttttcaacatagtactggaagtcttagctagagaaatcagacgagaaagaaataaaggccatcgaaactggaaaggaagaaatcaaattatccttgtttgcagatg-tgtgatcttatatttcaaaaaacctaaagactcacca-aaaaaactactagaacagataagcaaattcagtaaagttgtaaaatacaaaatcgacatacaaaaatcagtagcatttccatgtgccaacagtgaacaatctgaaaaggaaatcaagaaagtaatcttgtttacagtagttac-----aaataaaataaaatctattaggatttaaccaaagacatgaaagatctctataatgaaaactaaaatatattg--ataagaaattgaagaggacacacaaaaactggaaagatactccatgttcatggattgaagaattaatattgctaaaatgtccatattacctaaagcaatagacaagtttaatgcaatccctatccaaataccaatgatttggatctaccagtctatttcttattcacagaaatag-aaaaaacaattctaaaatttgtataaaaccacaaaatatcctgaatagccaaagctatcctaagcaaaaagaacaaaactggaggaatcacattacctgactttaaattatactacaaagctatagtaaccaaaatggcatggtactggcataaaaacaaacacataaatcagtggaacagaatagataacccagagataaatccatacatatacagtgaacttatttttgacagagg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53816956 1057 - 163208435 atcccagggatgtgaggatggttctacattcacaaatcagtcaatgtgatacatcaaaacaacagaatgaagaacaaaa---accatatgatcatttcaatgaatgctgaaaaagtatttgataaaactcaacatcccttcatgataaaaaccccaaaaagcaactgggtatggaaggaacatacctcaacacaatcaaagacatatatgacagacccatagctggcatcatattgaatggggaaaagctgaaagcctttcctctaagatcttgaacatgacaaggatacccactttcaccaccgttattcaacatagtactggaagtcttagctagagaaatcagatgagaaagaaataaaggccatccaaacaggaaaggaagaaatcaaattatccttgtttgcagatgatgtgatcttatatttctaaaaacctaaagactcacca-aaaaaactactagaacagataagcaaattcagtaaagttgtaagatacaaaatcgacatacaaaaatcagtagcatttccatttgccaacagtgaacaatctgaaaaggaaatcaagaaagtaatcttatttacagtagttac-----aaataaaataaaatatattaggaattaaccaaagaagtgaaagatctctataatgaaaactaaaatatattgatataagaaattgaagaggacacacaaaaactggaaagatactccatgttcatggattgaagaattaatattgctaaaatgtccatattacctaaagcaatagacaagtttaatgcaatgcctatccaaataccgatga--------------------cattattcacagaaatat-aaaaaatgattctaaaatttatataaaaccacaaaatatcctgaatagccaaagctatcctaagcaaaaagaacaaaactggaggaatcacattacctgactttaaattatactacaaagctatagtaaccaaaacggcatggtactggcataaaaacaaacacataaatcagtggaacagaatagagaacccagagataaatccatacatatacagtgaacttatttttgacagagg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87840559 1051 - 180051392 atcccagaggtgtgaagatggttctacattcacacatcggtcaatgtgatacatcagaacaacataatgaaatacaaaaaccaccatatgatcatttcaatgaatgctgaaaaagcatttgataaaactcaacatcgcttcatgataaaaaccccaaaaagtaactgggtatagaaggaacatacctcaacaaaatcaaagacgtgtatgacagacctatagctggcatcatattgaatggggaaaagctgaaagcctttcctgtaagatcttgaacatgacaaggatgccctctttcaccactggtattcaacatagtgctagaaggcttagctagataaatcagatgagtaagaaataaaggccatccaaactggaaaggaagaaatcaaattatccttgtttgcagatgatgtgatcttatatttcaaaaaacctaaagactccacc-aaaaaactactagaacagataagcaaattcagtaaagttgtaagatacaaaattaacatacaaaaatcagtagcatttccatgtgccaacagtgaacagtctgaaaaagaaatcaagaaaataatcttatttacagtagttac-----aaataaaataaaatatattaggaattaaccaaagaagtgaaagatctctatagtgaaaactaaaaaatattgatataagaaattgaagaggacacacaaaaaatggaaagatacgccatgttcatagattgaagaattaatattgctaaaatgtccatattacctaaagcaacagacaagtttaatgcaatccctgtccaaataccaa-----------------------cattattcacagaaatag-aaaaaacaattctaaaatttatatgaaatgacaaaatatcctgaatagccaaagctatcctgagcaaaaagaacaaaactggaggaatcacattacctgact-----ttatactacaaagttatagtaaccaaaatggcatggtactggcataaaaacaaacacataaatcagtggaacagaatagaagacccagagataaatccata-atattcagtgaaattatttttgacagagg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87944979 1051 - 181584905 atcccagaggtgtgaagatggttctacattcacacatcggtcaatgtgatacatcagaacaacataatgaaatacaaaaaccaccatatgatcatttcaatgaatgctgaaaaagcatttgataaaactcaacatcgcttcatgataaaaaccccaaaaagtaactgggtatagaaggaacatacctcaacaaaatcaaagacgtgtatgacagacctatagctggcatcatattgaatggggaaaagctgaaagcctttcctgtaagatcttgaacatgacaaggatgccctctttcaccactggtattcaacatagtgctggaaggcttagctagataaatcagatgagtaagaaataaaggccatccaaactggaaaggaagaaatcaaattatccttgtttgcagatgatgtgatcttatatttcaaaaaacctaaagactccacc-aaaaaactactagaacagataagcaaattcagtaaagttgtaagatacaaaattaacatacaaaaatcagtagcatttccatgtgccaacagtgaacagtctgaaaaagaaatcaagaaaataatcttatttacagtagttac-----aaataaaataaaatatattaggaattaaccaaagaagtgaaagatctctatagtgaaaactaaaaaatattgatataagaaattgaagaggacacacaaaaaatggaaagatacgccatgttcatagattgaagaattaatattgctaaaatgtccatattacctaaagcaacagacaagtttaatgcaatccctatccaaataccaa-----------------------cattattcacagaaatag-aaaaaacaattctaaaatttatatgaaatgacaaaatatcctgaatagccaaagctatcctgagcaaaaagaacaaaactggaggaatcacattacctgact-----ttatactacaaagttatagtaaccaaaatggcatggtactggcataaaaacaaacacataaatcagtggaacagaatagaggacccagagataaatccata-atattcagtgaaattatttttgacagagg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1167775 1051 - 8785636 atcccagaggtgtgaagatggttctacattcacacatcggtcaatgtgatacatcagaacaacataatgaaatacaaaaaccaccatatgatcatttcaatgaatgctgaaaaagcatttgataaaactcaacatcgcttcatgataaaaaccccaaaaagtaactgggtatagaaggaacatacctcaacaaaatcaaagacgtgtatgacagacctatagctggcatcatattgaatggggaaaagctgaaagcctttcctgtaagatcttgaacatgacaaggatgccctctttcaccactggtattcaacatagtgctggaaggcttagctagataaatcagatgagtaagaaataaaggccatccaaactggaaaggaagaaatcaaattatccttgtttgcagatgatgtgatcttatatttcaaaaaacctaaagactccacc-aaaaaactactagaacagataagcaaattcagtaaagttgtaagatacaaaattaacatacaaaaatcagtagcatttccatgtgccaacagtgaacagtctgaaaaagaaatcaagaaaataatcttatttacagtagttac-----aaataaaataaaatatattaggaattaaccaaagaagtgaaagatctctatagtgaaaactaaaaaatattgatataagaaattgaagaggacacacaaaaaatggaaagatacgccatgttcatagattgaagaattaatattgctaaaatgtccatattacctaaagcaacagacaagtttaatgcaatccctatccaaataccaa-----------------------cattattcacagaaatag-aaaaaagaattctaaaatttatatgaaatgacaaaatatcctgaatagccaaggctatcctgagcaaaaagaacaaaactggaggaatcacattacctgact-----ttatactacaaagttatagtaaccaaaatggcatggtactggcataaaaacaaacacataaatcagtggaacagaataaaggacccagagataaatccata-atattcaatgaaattatttttgacagagg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1636108 1052 + 27333823 atcccagaggtgtgaagatggttctacattcacacatcagtcaacgtgatacatcagaacaacataatgaaatacaaaaaccaccatatgatcatttcaatgaatgctgaaaaagcatttgataaaactcaacatcgcttcatgataaaaaccccaaaaagtaactgggtatagaaggaacatacctcaacaaaatcaaagacgtgtatgacagacctatagctggcatcatattgaatggggaaaagctgaaagcctttcctgtaagatcttgaacatgacaaggatgccctctttcaccaccggtattcaacatagtgctggaaggcttagctagataaatcagatgagtaagaaataaaggccatccaaactggaaaggaagaaatcaaattatccttgtttgcagatgatgtgatcttatatttcaaaaaacctaaagactccacc-aaaaaactactagaacagataagcaaattcagtaaagttgtaagatacaaaattaacatacaaaaatcagtagcatttccgtgtgccaacagtgaacagtctgaaaaagaaatcaagaaaataatcttatttacagtagttac-----aaataaaataaaatatattaggaattaaccaaagaagtgaaagatctctatagtgaaaactaaaaaatattgatataagaaattgaagaggacacacaaaaaatggaaagatacgccatgttcatagattgaagaattaatattgctaaaatgtccatattacctaaagcaacagacaagtttaatgcaatccctatccaaataccaa-----------------------cattattcacagaaatagaaaaaaacaattctaaaatttataggaaatgacaaaatatcctgaatagccaaagctatcctgagcaaaaagaacaaaactggaggaatcacattacctgact-----ttatactacaaagttatagtaaccaaaatggcatggtactggcataaaaacaaacacataaatcagtggaacagaatagaggacccagagataaatccata-atattcagtgaaattatttttgacagagg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1906322 1059 - 91010382 atcccagaggtgtgaagatggttctacattcacacatcagtcaatgtgatacatcagaacaacataatgaaatacaaaaaccaccatatgatcatttcaatgaatgctgaaaaagcatttgataaaactcaacatcgcttcatgataaaaaccccaaaaagtaactgggtatagaagggacatacctcaacaaaatcaaagacgtgtatgagagacctatagctggcatcatattgaatggggaaaagctgaaagcctttcatgtaagatcttgaacatgacaagaatgccctctttcaccaccagtattcaacatagtactggaaggcttagctagataaatcagatgagtaaaaaataaaggccatccaaactgggaaggaaaaaatcaaattatccttgtttgcagatgatgtgatcttatatttcaaaaaacctaaagactccacc-aaaaaactactagaacagataagcaaattcagtaaagttgtaagatacaaaatcaacatacaaaaatcagtagcatttccatgtgccaacagtgaacaatctgaaaaagaaatcaagaaaataatcttatttacagtagttacaaataaaataaaataaaatatattaggaattaaccaaagaagtgaaagatctctatagtgaaaactaaaaaatattgatataagaaattgaagaggacacacaaaaaatggaaagatacgccatgttcatagattgaagaattaatattgctaaaatgtccatattacctaaagcaacagacaagtttaatgcaatccctatccaaataccaacgg--------------------cattattcacagaaatag-aaaaaacaattctaaaatttatatgaaaccacaaaatatcctgaatagccaaagctatcctgagcaaaaagaacaaaactggaggaatcacattacctgact-----ttatactacaaagttgtagtaaccaaaatggcatggtactggcataaaaacaaacacataaatcagtggaacagaatagaggacccatagataaattcata-atattcagcgaaattatttttgacagagg i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7723455 1056 - 21726897 atcccagaggtgtggagatggttctacattcacacatcagtcaatgtgatacatcagaacaacagaatgaaatacaaaaaccaccatatgatcatttcaatgaatgctgaaaaagcatttgataaaactcaacatcgcttcatgataaaaaccccaaaaagtaactgggtatagaaggaacatacctcaacaaaatcaaagacgtgtatgacagacccatagctggcatcatattgaatggggaaaagctgaaagcctctcctctaagatcttgaacatgacaaggatgccctctttcaccactgttattcaacatagtactggaaggcttagctagataaatcagatgagtaagaaataaaggccatccaaactggaaaggaagaaatcaaattatccttgtttgcagatgatgtgatcttatatttcaaaaaacctaaagactctaccaaaaaaactactagaacagataagcaaattcagtaaagctgtaagatacaaaatcaacatacaaaaatcagtagcatttccatgtgccaacagtgaacaatctgaaaaagaaatcaagaaagtaatcttatttacagtagttac-----aaataaaataaaatatattaggaattaaccaaagaagtgaaagatctctataatgaaaactaaaaaatattgatataagaaattgaagaggacacacaaaaaatggaaagatatgccatgttcatagattgaagaattaatattgctaaaatgtccatattacctaaagcaacagacaagtttaatgtaatccctatccaaataccaacga--------------------cattattcacaaaaatag-aaaaaacaattctaaaatttatatgaaaccacaaaatatactgaatagctaaagctatcctgagcaaaaagaacaaaactggaggaatcacattacctgact-----ttatactacaaagttatggtaaccaaaatggcatggtactggcataaaaacaaacacataaatcagtggaacagaatagaggacccagagataaatccatacatattcagtgaaattatttttgacagagg i colAng1.NW_012115488v1 I 6211 C 0 e canFam3.chr3 14322655 0 + 91889043 C e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I e aotNan1.NW_018506370v1 1424391 6047 - 15889662 I e cebCap1.NW_016107830v1 347176 6318 - 1393929 I e saiBol1.JH378106 44983467 6293 + 71252344 I e calJac3.chr2 112537767 3709 + 204313951 I e manLeu1.NW_012103732v1 2011200 15645 + 5179401 I a score=2707409.000000 s hg38.chr5_GL383530v1_alt 49796 351 + 101241 tgccaggaacatacattgggaaaaggaccacctcttcaataaacagtgctgggaaaactggatatccatatgaaagagaatgaaattagaccctatctctcaccatatacaaaaatcaaaccaaaatggattaaagacttaagtctaaaacctcaaactatgaaactactaaaagagaacatcggggaaac-tttctaggacattggaccaagtaaagatttcttaagtaatacctcacaaacacaggcaaccaaagcaaaaatggacaaatgggattacataaagttaaaaagcttctgaacagcaaagaaaacaatcaacaaagtgaagagacatccaacagaatgggaa s panTro5.chr5 20282682 351 + 181907262 tgccaggaacatacattgggaaaaggaccacctcttcaataaacagtgctgggaaaactggatatccatgtgaaagagaatgaaattagaccctatctctcaccatatataaaaatcaaaccaaaatggattaaagacttaagtctaaaacctcaaactatgaaactactaaaagagaacattggggaaac-tttctaggacattggaccaagtaaagatttcttaagtaatacctcacaaacacaggcaaccaaagcaaaaatggacaaatgggattacataaagttaaaaagcttctgaacagcaaagaaaacaatcaacaaagtgaagagacatcccacagaatgggaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20294980 351 + 183735486 tgccaggaacatacattgggaaaaggaccacctcttcaataaacagtgctgggaaaactggatatccatgtgaaagagaatgaaattagaccctatctctcaccatatacaaaaatcaaaccaaaatggattaaagacttaagtctaaaacctcaaactatgaaactactaaaagagaacattggggaaac-tttctaggacattggaccaagtaaagatttcttaagtaatacctcacaaacacaggcaaccaaagcaaaaatggacaaatgggattacataaagttaaaaagcttctgaacagcaaagaaaacaatcaacaaagtgaagagacatcccacagaatgggaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4781773 351 - 13748885 tgccaggaacatacattgggaaaaggaccacctcttcaataaacagtgctgggaaaactggatatccatatgaaagagaatgaaattagaccctatctctcaccatatacaaaaatcaaaccaaaatggattaaagacttaagtctaaaacctcaaactatgaaactactaaaagagaacattggggaaac-tttctaggacattggaccaagtaaagatttcttaagtaatacctcacaaacacaggcaaccaaagcaaaaatggacaaatgggattacataaagttaaaaagcttctgaacagcaaagaaaacaatcaacaaagtgaagagacatcccacagaatgggaa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53818013 341 - 163208435 tgccaggaacatacattgggaaaaggaccacctcttcaataaacagtgctgggaaaactggatatccatatgaaagagaatgaatttagaccctatctctcaccatatacaaaaatcaaaccaaaatggattaaagacttaagtttaaaacctcaaactatg-----------agagaacattggggaaacttttctaggacattggaccaggtaaagatttcttaagtaatacctcacaaacacaggcaaccaaagcaaaaatggacaaatgggattacataaagttaaaaagcatctgaacagcaaagaaaacaatcaacaaagtgaagagacaacccacagaatgggaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87841610 349 - 180051392 tgccaggaacatacattgggaaaaggaccacctcttcaataaacagtgctgggaaaactggatatccatatgcaagagaatgaaattagaccctatctctcaccatacacaaaaatcaaataaaaatggattaaagacttaagtctaaaacctcaaattatgaaactatta--agagaatattggggaaac-tttctaggacattggaccaggtaaagatttcttaagtaatacctcacaaacacaggcaaccaaagcaaaaatggacaaatgggattacatcaagttaaaaagcttctgaacagcaaagaaaacaatcaacaaagtgaagagacaacccacagaatgggag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87946030 349 - 181584905 tgccaggaacatacattgggaaaaggaccacctcttcaataaacagtgctgggaaaactggatatccatatgcaagagaatgaaattagaccctatctctcaccatacacaaaaatcaaataaaaatggattaaagacttaagtctaaaacctcaaattatgaaactatta--agagaatattggggaaac-tttctaggacattggaccaggtaaagatttcttaagtaatacctcacaaacacaggcaaccaaagcaaaaatggacaaatgggattacatcaagttaaaaagcttctgaacagcaaagaaaacaatcaacaaagtgaagagacaacccacagaatgggag i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1168826 349 - 8785636 tgccaggaacatacattgggaaaaggaccacctcttcaataaacagtgctaggaaaactggatatccatatgcaagagaatgaaattagaccctatctctcaccatacacaaaaatcaaataaaaatggattaaagacttaagtctaaaacctcaaattatgaaactatta--agagaatattggggaaac-tttctaggacattggaccaggtaaagatttcttaagtaatacctcacaaacacaggcaaccaaagcaaaaatggacaaatgggattacatcaagttaaaaagcttctgaacagcaaagaaaacaatcaacaaagtgaagagacaacccacagaatgggag i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1637160 349 + 27333823 tgccaggaacatacattgggaaaaggaccacctcttcaataaacagtgctgggaaaactggatatccatatgcaagagaatgaaattagaccctatctctcaccatacacaaaaatcaaataaaaatggattaaagacttaagtctaaaacctcaaattatgaaactatta--agagaatattggggaaac-tttctaggacattggaccaggtaaagatttcttaagtaatacctcacaaacacaggcaaccaaagcaaaaatggacaaatgggattacatcaagttaaaaagcttctgaacaacaaagaaaacaatcaacaaagtgaagagacaacccacagaatgggag i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1907381 349 - 91010382 tgccaggaacatacattgggaaaaggaccacctcttcaataaacagtactgggaaaactgggtatccatatgcaagagaatgaaattagaccctatctctcaccatacacaaaaatcaagtaaaaatagattaaagacttaagtctaaaacttcgaattatgaaactatta--agagaacattggggaaac-tttctaggacattggaccaggtaaagatttcttaagtaatacctcacaaacacaggcaaccaaagcaaaaatggacaaatggtattacatcaagttaaaaagcttctgaacagcaaagaaaacaatcaacaaagtgaagagacaacccacagaatgggag i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7724511 349 - 21726897 tgccaggaacatacattggggaaaggaccacctcttcaataaacagtgctgggaaaactggatatccatatgcaagagaatgaaattagaccctctctctcaccatacacaaaaatcaaatcaaaatggattaaagacttaagtctaaaacctcaaattatcaaactatta--agagaacattggggaaac-tttctaggacattggaccaggtaaagatttcttaagtaatacctcacaaacacaggcaaccaaagcaaaaatggacaaatgggattacatcaagttaaaaagcttctgaacagcaaagaaaaccatcaacaaagtgaagagacaacccacagaatgggag i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112541476 351 + 204313951 tgcctggaacatacattgggaaaaggaccatctcttcaataaacagtgctgggaaaactggatatccatatgcaagaaaatgaaactagaccctatctctcactgtataaaaaaatcaaataaaaatggattaaagacttaagtccaagacctcaaactgtgaaaatactaaaagagaacattggggaaac-tttccaggacatccgactaggtaaagatttcttaagcagtacctcacaaacacaggcaaccaaagcaaaaatggacaaatgggatcacatcaagtgaaaaagcttctgaacagcaaaggaaacaatgaacaaaatgaagagacaacctacagaatgggag i calJac3.chr2 I 3709 C 0 s saiBol1.JH378106 44989760 350 + 71252344 tgcctggaacatacattgggaaaaggaccatctcttcaataaacagtgctgggaaaactggatatccatatgcaagaaaatgaaactagaccctatctctcaccatat-aaaaaatcaaataaaaattgattaaagacttaaatctaagacctcaaactatgaaaatactaaaagagaacactggggaaac-tttctaggacattggaccgggtaaagacttcttaagcagtacctcacaaacacaggcaaccaaagccaaaatggacaaatgggaccacatcaagttaaaaagcttctgaatggcaaaggaaacaatgagcaaaatgaagagacaacccacagaatgggag i saiBol1.JH378106 I 6293 C 0 s cebCap1.NW_016107830v1 353494 351 - 1393929 tgcctggaacatagattgggaaaaggatcgtctcttcaataaacagtgctgggaaaactggatatccatatgcaagaaaatgaaactagaccctatctctcaccatataaaaaaatcaaataaaaatggattaaaaacttaaatctaaggcctcaaactatgaaaatactaaaagagaacattggggaaac-tttctaggaccttggactgggtaaagacttcttaagcagtacctcacaaacacaggcaaccaaagcaaaaatggacaaatgggatcacatcaagttaaaaagcttctgaacagcaaaggaaacaatgaacaaaatgaagagacaacccacagaatgggag i cebCap1.NW_016107830v1 I 6318 C 0 e canFam3.chr3 14322655 0 + 91889043 C e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I e aotNan1.NW_018506370v1 1424391 6047 - 15889662 I e manLeu1.NW_012103732v1 2011200 15645 + 5179401 I a score=855719.000000 s hg38.chr5_GL383530v1_alt 50147 109 + 101241 aaaatatttgcaaactatccctctggcaagtaattaataaccagaatatataaggagctcaaactactctatagg-aaaaagaatgttataatctgaatt-aaaaatagac s panTro5.chr5 20283033 109 + 181907262 aaaatacttgcaaactatccctctggcaagtaattaataaccagaatatataaggagctcacactactctatagg-aaaaagaatcttataatctgaatt-aaaaatagac i panTro5.chr5 C 0 C 0 s panPan2.chr5 20295331 109 + 183735486 aaaatatttgcaaactatccctctggcaagtaattaataaccagaatatataaggagctcacaatactctatagg-aaaaagaatcttataatctgaatt-aaaaatagac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4782124 109 - 13748885 aaaatgtttgcaaactatccctctggcaagtaattaataaccagaatatataaggagctcaaactactctatagg-aaaaagaatcttataatctgaatt-aaaaatagac i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53818354 109 - 163208435 aaaatatttgcaaactatccctctggcaagtaattaataaccagaacatataaggagctcaaactactctatagg-aaaaagaatcttataatctgagtt-aaaaatagac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87841959 110 - 180051392 aaaatatttgcaaactatccatctggcaagtgattaataaccagaatatataaggagctcaaactactctatacg-aaaaagaatcttataacttgaattaaaaaatagac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87946379 110 - 181584905 aaaatatttgcaaactatccatctggcaagtgattaataaccagaatatataaggagctcaaactactctatacg-aaaaagaatcttataacttgaattaaaaaatagac i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1169175 110 - 8785636 aaaatatttgcaaactatccatctggcaagtgattaataaccagaatatataaggagctcaaactactctatagg-aaaaagaatcttataacttgaattaaaaaatagac i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1637509 110 + 27333823 aaaatatttgcaaactatccatctggcaagtgattaataaccagaatatataaggagctcaaactactctatagg-aaaaagaatcttataacttgaattaaaaaatagac i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1907730 110 - 91010382 aaaatatttgcaaactatccatctggcaagtgattaataaccagaatatataaggagctcaaactactctatagg-aaaaagaatcttgtaacttgaattaaaaaatagac i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2026845 110 + 5179401 aaaatatttgcaaactatccatctggcaagtgattaataatcagaatatataaggagctcaaactactctatagg-aaaaagaatcttataacttgaattaaaaaatagac i manLeu1.NW_012103732v1 I 15645 C 0 s colAng1.NW_012115488v1 7724860 111 - 21726897 aaaatatttgcaaactatccatctggcaagtgattaataaccagaatatataaggagctcaaactactctataggaaaaaagaatcttataacttgaattaaaaaatagac i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112541827 94 + 204313951 aaaacatttgcaaactatccatctgacaagtgattaataaccagaatatata-----ctcaaactactccatagg-aaaaaaaa---cataatttgaatttaa-------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44990110 101 + 71252344 aaaacatttgcaaactatccatctgacgagtgattaataaccagaatatataagaagctcaaactactccctagg-aaaaaaaa-attataatctgaatttta-------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 353845 101 - 1393929 aaaacatttgcaaattatccatctgacaagtgattaataaccagaatatgtaaggagctcaaactactccatagg-aaaaaaaa-cttataatctgaatttta-------- i cebCap1.NW_016107830v1 C 0 C 0 e canFam3.chr3 14322655 0 + 91889043 C e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I e aotNan1.NW_018506370v1 1424391 6047 - 15889662 I a score=5081697.000000 s hg38.chr5_GL383530v1_alt 50256 511 + 101241 aaaa-atctcaatagacatttctcaaaagaagacatgcagatggaaaacaggtgctcaacatcattgatcatcatagaaatgcaaatcaaaactacagtgagataccatctcatgccagttagagtggcttttatcccaaagtcaggcaatcacaaatgctggcgaggttgtggagaaaagggaattctggtacgctgttgttgggagtgtaaattagtaaaaccactatggagaacagtttggcggctcctcataaaagtaaaaatagagctaccatatgctccagcaatcccactgctgggtatgtcccctcgcaaaaaggaaagcat-tatattgaagagatatctgcacttccatgttaattgcagcactgttcaaaatagcgaagattgggaagcaatcttaagtgtccatcaacagatgaatggataaagaaaatgtggtacatatacagaatggagtactaatcagccatgaaaaagaataagatctcatcatttgt----------ctggaactg s panTro5.chr5 20283142 511 + 181907262 aaaa-atctcaatagacatttctcaaaagaagacatgcagatggaaaacaggtgctcaacatcattgatcatcatagaaatgcaaatcaaaactacagtgagataccatctcatgccagttagagtggcttttatcccaaagtcaggcaatcacaaatgctggcaaggttgtggagaaaagggaattctggtacgctcttgttgggagtgtaaattagtaaaaccactatggagaacagtttggtggttcctcataaaagtaaaaatagagctaccatatgctccagcaatcccactgctgggtatgtacccccgcaaaaaggaaagcat-tatattgaagagatatctgcacttccatgttaattgcagcactgttcaaaatagtgaagattgggaagcaatcttaagtgtccatcaacagatgaatggataaagaaaatgtggtacatatacagaatggagtactaatcagccatgaaaaagaataagatctcatcatttgt----------ctggaactg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20295440 511 + 183735486 aaaa-atctcaatagacatttctcaaaagaagacatgcagatggaaaacaggtgctcaacatcattgatcatcatagaaatgcaaatcaaaactacagtgagataccatctcatgccagttagagtggcttttatcccaaagtcaggcaatcacaaatgctggcaaggttgtggagaaaagagaattctggtacgctgttgttgggagtgtaaattagtaaaaccactatggagaacagtttggtggttcctcataaaagtaaaaatagagctaccatatgctccagcaatcccactgctgggtatgtacccccgcaaaaaggaaagcat-tatattgaagagatatctgcacttccatgttaattgcagcactgttcaaaatagtgaagattgggaagcaatcttaagtgtccatcaacagatgaatagataaagaaaatgtggtacatatacagaatggagtactaatcagccatgaaaaagaataagatctcatcatttgt----------ctggaactg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4782233 511 - 13748885 aaaa-atctcaatagacatttctcaaaagaagacatacagatggaaaacaggtgctcaacatcattgatcatcatggaaatgcaaatcaaaactacagtgagataccatctcatgccagttagagtggcttttatcccaaagtcaggcaatcacaaatgctggcgaggttgtggagaaaagggaattctggtacgctgttgttgggagtgtaaattagtaagaccactatggagaacagtttggcggttcctcataaaagtaaaaatagagctaccatatgctccagcaatcccactgctgggtatgtacccccgcaaaaaggaaagcat-tatattgaagagatatctgcacttccatgttaattgcagcactgttcaaaatagcgaagattggaaagcaatcttaagtgtccatcaacagatgaatggataaagaaaatgtggtacatatatagaatggagtactaatcagccatgaaaaagaataagatctcatcatttgt----------ctggaactg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53818463 511 - 163208435 aaaa-atctcaatagacatttctcaaaagaagacatacagatggaaaacaggtgcgcaacatcattgatcatcatagaaatgcaaatcaaaactacagtgagataccatctcatgccagttagagtggcttttatcccaaagtcaggcaatcacaaatgctggcgaggttgtggagaaaaggaaattctggtacactgttgatgggagtgtaaattagtaaaaccactatggagaatagtttggtggttcctcataaaagtaaaaatagagctaccatttgctccagcaatcccactgctgggtatgtacccccacaaaaaggaaagcag-tatattgaagagatatctgcacttccatgttaattgcagcactgttcaaaatagcgaagattgggaagcaatcttaagtgtccatcaacagatgaatggataaagaaaatgtggtacatatacagaatggagtactaatcagccatgaaaaagaataagatctcatcatttgt----------ctggaactg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87842069 521 - 180051392 aaaagatctcaatagacatttctcaaaagaagacatacagatggaaaacagatgcacaacatcattgatcatcatagaaatgcaaatcaaaactacagtgagatactatctcatgccagttagagtggcttttatcccaaagtcaggcaatcacaaatgctggcaaggatgtagagaaaagggaattctggtacactgttgatgggagtgtaaattagtaaaaccactatggagaacagtttggcggttcctcataaaagtaaaaatagacctaccatatgctccagcaatcccactgctgggtatgtacccccgcaaaaaggaaagcag-tatattgaagagatgtctgcacttccatgttaattgcagcactattcaaaatagcgaagatcgggaagcaatc-taagtgtccatcaacagacgaatggataaagaaaatgtggtacatacacagagtggagtactaatcaaccatgaaaaagaatgagatcttaccatttgcaacaacatgaatggaactg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87946489 521 - 181584905 aaaagatctcaatagacatttctcaaaagaagacatacagatggaaaacagatgcacaacatcattgatcatcatagaaatgcaaatcaaaactacagtgagatactatctcatgccagttagagtggcttttatcccaaagtcaggcaatcacaaatgctggcaaggatgtagagaaaagggaattctggtacactgttgatgggagtgtaaattagtaaaaccactatggagaacagtttggcggttcctcataaaagtaaaaatagacctaccatatgctccagcaatcccactgctgggtatgtacccccgcaaaaaggaaagcag-tatattgaagagatgtctgcacttccatgttaattgcagcactattcaaaatagcgaagatcgggaagcaatc-taagtgtccatcaacagacgaatggataaagaaaatgtggtacatacacagagtggagtactaatcaaccatgaaaaagaatgagatcttaccatttgcaacaacatgaatggaactg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1169285 522 - 8785636 aaaagatctcaatagacatttctcaaaagaagacatacagatggaaaacagatgcacaacatcattgatcatcatagaaatgcaaatcaaaactacagtgagatactatctcatgccagttagagtggcttttatcccaaagtcaggcaatcacaaatgctggcaaggatgtagagaaaagggaattctggtacactgttgatgggagtgtaaattagtaaaaccactatggagaacagtttggcggttcctcataaaagtaaaaatagacctaccatatgctccagcaatcccactgctgggtatgtacccccgcaaaaaggaaagcagttatattgaagagatgtctgcacttccatgttaattgcagcactattcaaaatagcgaagatcaggaagcaatc-taagtgtccatcaacagacgaatggataaagaaaatgtggtacatacacagagtggagtactaatcaaccatgaaaaagaatgagatcttaccatttgcaacaacatgaatggaactg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1637619 521 + 27333823 aaaagatctcaatagacatttctcaaaagaagacatacagatggaaaacagatgcacaacatcattgatcatcatagaaatgcaaatcaaaactacagtgagatactatctcatgccagttagagtggcttttatcccaaagtcaggcaatcacaaatgctggcaaggatgtagagaaaagggaattctggtacactgttgatgggagtgtaaattagtaaaaccactatggagaacagtttggcggttcctcataaaagtaaaaatagacctaccatatgctccagcaatcccactgctgggtatgtacccccgcaaaaaggaaagcag-tatattgaagagatgtctgcacttccatgttaattgcagcactattcaaaatagcgaagatcgggaagcaatc-taagtgtccatcaacagacgaatggataaagaaaatgtggtacatacacagagtggagtacttatcaaccatgaaaaagaatgagatcttatcatttgcaacaacatgaatggaactg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1907840 521 - 91010382 aaaagatctcagtagatatttctcaaaagaagacatacagatggaaaacaggtgcacaacatcattgatcatcatagaaatgcaaatcaaaactacagtgagatactatctcatgccagttagagtggcttttatcccaaagtcaggcaatcacaaatgctggcaaggatgtagagaaaagggaattctggtacactgttgatgggagtgtaaattagtaaaaccactatggagaacagtttggcggttcctcataaaagtaaaaatagacctaccatatgctccagcaatcccactgctgggtatgtacccccgcaaaaaggaaagcag-tatattgaagagatgtctgcacttccatgttaattgcagcactattcaaaatagcgaagatcgggaagcaatc-taagtgtccatcaacagacgaatggataaagaaaatgtggtacatacacagagtggagtactaatcaaccatgaaaaagaatgagatcttatcatttgcaacaacatgaatggaactg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2026955 521 + 5179401 aaaagatctcaatagacatttctcaaaagaagacatacagatggaaaacagatgcacaacatcattgatcatcatagaaatgcaaatcaaaattacagtgagatactatctcatgccagttagagtggcttttatcccaaagtcaggcaatcacaaatgctggaaagggtgtagagaaaagggaattctggtacactgttgatgggagtgtaaattagtaaaaccactatggagaacagtttggcggttcctcataaaagtaaaaatagacctaccatatgctccagcaatcccactgctgggtatgtacccccacaaaaaggaaagcag-tatattgaagagatgtctgcacttccatgttaattgcagcactattcaaaatagcgaagatcgggaagcaatc-taagtgtccatcaacagacgaatggataaagaaaatgtggtacatacacagagtggagtactaatcaaccatgaaaaagaatgagatcttatcatttgcaacaacatgaatggaactg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7724971 521 - 21726897 aaaagatctcaatagacatttctcaaaagaagacatacagatggaaaacaggtgcacaacatcattgatcatcatagaaatgcaaatcaaaactacagtgagatactatctcatgccagttagagtggcttttatcccaaagtcaggcaatcacaaatgttggcaaggatgtagagaaaagggaattctggtacactgttgatgggagtgtaaattagtaaaaccactatggagaacagtttggcggttcctcataaaagtaaaaatagacctaccatatgctccagcaatcccactgctgggtatgtacccccgcaaaaaggaaagcag-tatattgaagagatgtctgcacttccatgttaattgcaacactattcaaaatagcgaagattgggaagcaatc-taagtgtccatcaacagacgaatggataaagaaaatgtggtacatacacacagtggagtactaatcaaccatgaaaaagaatgagatcttatcatttgcaacaacatgaatggaactg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112541921 515 + 204313951 -aaagatcttaatagacatttctcaaaagaagacatacagatggaaagt--gtgctcaacatcattgatcatcacagaaatgcaaatcaaaactacagcgagacaccatctcacttcagttagaatggcttttatcccaaagtcaggcaattgcaaatgctggcgatgatatggagaaaagggaattctcatacactcttgatggtagtgtaaatcagtaaaatcactatggaaa--agtttggtggtttctcaaaaaggtgagaatagagctacgatatgattcagcaatcccactgctgagtatataccccc-caaaaaggagagcag-tatattgaagagatagctgcactcccatgttaactgcagcactattcaaagtagccaagattgggaagcaatc-tcagggtctattaactgatgaatggataaagaaaatatggtgcatatacagagtggagtactaatcagccatgaaaaagaatgagatcctgtcatttgcaacaatatgaatggaactg i calJac3.chr2 C 0 I 50 s saiBol1.JH378106 44990211 514 + 71252344 -aaagatcttaatagacatttctcaaaagaagacatacagatggaaaacaggtgctcaacatcattgatcatcacagaaatgcaaatcaaaactacagcgagacaccatctcacttcagttagaatggcttctatcccaaagtcaggcaatcacaaatgccggcgatgatattgagaaaagggaattctcatacactgttgatggtagtgttaattagtaaaatcactatggaga--agtttggtggttcctcaaaaaagtgagaatagggctaccat---gttcagcaatcccactgccgagtatataccccc-caaaaaggaaagcag-tatagtgaagagatacctgcactcccatgttcattgcagcactattcaaagcagccaagattgggaagcaatc-taagggtccattaactgatgaatggataaagaaaatgtggtacataaacagagtggagtactaatcagccatgaaaaagaaagagatcctgttatttgcaacaatatgagtggaactg i saiBol1.JH378106 C 0 I 50 s cebCap1.NW_016107830v1 353946 517 - 1393929 -aaatatcttaataaacatttctcaaaagaagacatacagatggaaaacaggtactcaacattattgatcatcacagaaatgcaaatcaaaactacagcgagacaccatctcacttcagttagaatggcttttatcccaaagtcaggcaatcacaaatgctggcgatgacatggagaaaagggaattctcatacactgttgatggtagtgtaaattagtaaaatcactatggaga--agtttggtggttcctcaaaaaactaagaatagagctaccatatgattcagcaatcccattgctgagtatataccccc-caaaaaggaaagcag-tatattgaagagatatctgcactcccatattaattgcagcactattcaaagtagccaagattgggaagcaatc-taagggtccattaactgatgaatggataaagaaaatgtggtacatatacagagtggagtactaatcagccatgaaaaagaatgagatcctgtcatttgcaataatatgaatggaactg i cebCap1.NW_016107830v1 C 0 I 54 s aotNan1.NW_018506370v1 1430438 517 - 15889662 -aaagatcttaatagacatttctcaaaagaagacatacaggtggaaaacaggtgctcaacatcattgatcaccacagaaatgcaaatcaaaactatagcgagacaccatctcacttcagttagaatggcttttatcccaaagtcaggcaatcacaaatgctggcgatgatatggagaaaagggagttctcatacactgttgatggtagtgtaaattagtaaaatcactatggaga--agtttggtggttcctcaaaaaagtaagaatagagctactatatgattcagcaatcccactgctgagtatataccccc-caaaaaggaaagcag-catattgaagagatatctgcactcccatgttaattgcagcactattcaaagtagccaagactgggaagcaatc-taagggtccattaactgatgaatggataaagaaaatgtggtacataaacagagtggagtactaatcaaccatgaaaaggaatgagatcctgttatttgcaacaatatgaatggaactg i aotNan1.NW_018506370v1 I 6047 I 50 e canFam3.chr3 14322655 0 + 91889043 C e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I a score=5711.000000 s hg38.chr5_GL383530v1_alt 50767 4 + 101241 aagg- s panTro5.chr5 20283653 4 + 181907262 gagg- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20295951 4 + 183735486 gagg- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4782744 4 - 13748885 gagg- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53818974 4 - 163208435 gagg- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87842590 4 - 180051392 gaga- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87947010 4 - 181584905 gaga- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1169807 4 - 8785636 gaga- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1638140 4 + 27333823 gaga- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1908361 3 - 91010382 gag-- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2027476 4 + 5179401 gaga- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7725492 4 - 21726897 gaga- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112542486 4 + 204313951 -agtt i calJac3.chr2 I 50 C 0 s saiBol1.JH378106 44990775 4 + 71252344 -agtt i saiBol1.JH378106 I 50 C 0 e canFam3.chr3 14322655 0 + 91889043 C e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I e aotNan1.NW_018506370v1 1430955 50 - 15889662 I e cebCap1.NW_016107830v1 354463 54 - 1393929 I a score=7053082.000000 s hg38.chr5_GL383530v1_alt 50771 723 + 101241 tcattatgttaaatgaaataagctgggcacaaaagaacaaacttcatatcttctcacttatttgtgggagctaaaaatgaaaatgattgaact------catggggagtagaaggctggatacc--aggggctgggaagggtagttggcgagtgtgcagggcagaagtggggatggttaatg-------------gttagaaagaatgaataagacctagtatttgctagcacaacagggtgactgtggtaaaataatttgtgtacattaaaaaataact-aaaagagtataattggattgcttgtaacacaaaggataaatgcttgaggtgatggacatcctgtttaccctgatgtgactattattcattgcatgcctgtatcaaaatatttcatgtaacctgtaaatatagacac-cactatctacccacaaaaattaacaaTAAAAT-----AATAAAGTAGAGCAGAACCAGCAGACAATGACTGAAGGT-ACAGATGGCAAAGGAGAAGCAGGGGAATGACTGTCTGC-CTTCCTCCTATTTCTACTCCAGCATCCCTGTTCTAGCTCTTGCCATCTTGTACCCAAATGACTCGTAGATCCCTCCACTGCATCCTTAGCTAATGGTTTGTTCCATTGTTTTCATATACACCAAAGCTCTGCTATATGTGACCTTGTTATATTCTCAGCAGTCCAAAATGTAAATGTCTTATTTAAAATTTAGAATAAATATCAGACCCAGTAGCTGTC s panTro5.chr5 20283657 723 + 181907262 tcattatgttaaatgaaataagctgggcacagaagaacaaacttcatatcttctcacttatttgtgggagctaaaaatgaaaatgattgaact------catagggagtagaaggctggatacc--aggggctgggaagggtagttggcgagtgggcagggcagaagtggggatggttaatc-------------gttagaaagaatgaataagacctagtatttgctagcacaacagggtgactatggtaaaataatttgtgtacatttaaaaataact-aaaagagtataattggattgcttgtaacacaaaggataaatgcttgaggtgatggacatcgtgtttaccctgatgtgactattattcattgcatgcctgtatcaaaatatttcatgtaacctgtaaatatagacac-cactatctacccacaaaaattaacaaTAAAAT-----AATAAAGTAGAGCAGAACCAGCAGACAATGACTGAAGGT-ACAGATGGCAAAGGAGGAGCAGGGGAATGACTGTCTGC-GTTCCTCCTATTTCTACTCCAGCATCCCTGTTCTAGCTCTTGCCATCTTGTACCCAAATGACTCGTAGATCCCTCCACTGCATCCTTAGCTAATGGTTTGTTCCATTGTTTTCATATACACCAAAGCTCTGCTATATGTGACCTTGTTGCATTCTCAGCAGTCCAAAATGTAAATGTCTTATTTAAAATTTAGAATAAATATCAGACCCAGTAGCTGTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20295955 723 + 183735486 tcattatgttaaatgaaataagctgggcacagaagaacaaacttcatatcttctcacttatttgtgggagctaaaaatgaaaatgattgaact------catagggagtagaaggctggatacc--aggggctgggaagggtagttggcgagtgggcagggcagaagtggggatggttaatc-------------gttagaaagaatgaataagacctagtatttgctagcacaacagggtgactatggtaaaataatttgtgtacatttaaaaataact-aaaagagtataattggattgcttgtaacacaaaggataaatgcttgaggtgatggacatcgtgtttaccctgatgtgactattattcattgcatgcctgtatcaaaatatttcatgtaacctgtaaatatagacac-cactatctacccacaaaaattaacaaTAAAAT-----AATAAAGTAGAGCAGAACCAGCAGACAATGACTGAAGGT-ACAGATGGCAAAGGAGGAGCAGGGGAATGACTGTCTGC-GTTCCTCCTATTTCTACTCCAGCATCCCTGTTCTAGCTCTTGCCATCTTGTACCCAAATGACTCGTAGATCCCTCCACTGCATCCTTAGCTAATGGTTTGTTCCATTGTTTTCATATACACCAAAGCTCTGCTATATGTGACCTTGTTGTATTCTCAGCAGTCCAAAATGTAAATGTCTTATTTAAAATTTAGAATAAATATCAGACCCAGTAGCTGTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4782748 723 - 13748885 tcattatgttaaatgaaataagctgggcacagaagaacgaacttcatatcttctcacttatttgtgggagctaaaaatgaaaatgattgaact------catagggagtagaaggctggatacc--aggggctgggaagggtagttggcaagtgggcagggcagaagtggggatggttaatg-------------gttagaaagaatgaataagacctagtatttgctagcacaacagggtgactatggtaaaataatttgtgtacatttaaaaataact-aaaagagtataattggattgcttgtaacacaaaggatagatgcttgaggtgatggacatcctgtttaccctgatgtgactattattcattgcatgcctgtatcaaaatatttcatgtaacctgtaaatatagacac-cactgtctacccacaaaaattaacaaTAAAAT-----AATAAAGTAGAGCAGAACCAGCAGACAATGACTGAAGGT-ACAGATGGCAAAGGAGGAGCAGGGGAATGACTGTCTGC-CTTCCTCCTATTTCTACTCCAGCATCCCTGTTCTAGCTCTTGCCATCTTCTACCCAAATGACTCATAGATCCCTCCACTGCATCATTAGCTAATGGTTTGTTCCATTGTTTTCATATACACCAAAGCTCTGCTATATGTGACCTTGCTGTATTCTCAGCAGTCCAAAATATAAATGTCTTATTTAAAATTTAGAATAAATATCAGACTCAGTAGCTGTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53818978 737 - 163208435 tcattatgttaaatgaaataagctgggcacagaagaacaaacttcatatcttctcacttatttgtgggagctaaaaatgaaaataattgaact------catagagagtagaaggctggttacc--agaggctgggaagggtagttggcgagtgggcagggcagaagtggggatggttaatgggtac-aaaaatagttagaaaga--tgataagacctagtatttgctagcacaaca-ggtgactatggtaaaataatttgtgtacattt-aaaataactaaaaagagtataattgggttgcctgtaacacaaaggataaatgcttgaagtgatggacgtcctgtttaccctgatgtgactattattcattgcatgcctatatcaaaatatttcatgtaacctgtaaatatagacac-cactatctacccacaaaaattaacaaTAAAATAATAAAATAAAGTAGAGCAGAACCAGCAGACAATGACTGAAGGT-ACAGATGGCAAAGGAGAAGCAGGGGAATGACTGTCTGC-CTTCCTCCTATTTCTACTCCAGCATCCCTGTTCCAGCTCTTGCCATCTTGTACCCAAATGACTCATAGATCCCTCCACTGCATCCTTAGCTAATGGTTTGTTCCATTGTTTTCATATACACCAAAGCTCTGCTATATGTGACCTTGTTGTATTCTCAGCAGTCTAAAATGTAAATGTCTTATTTAAAATTTAGAATAAATATCAGACCCAGTAGCTGTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87842594 741 - 180051392 tcattatgttaaatgaaataaactgggcacagaagaacaaacttcctatcttctcacttaattgtgggagctaaaaatgaaaatgattgaact------cacagggagtagaaggctggttacc--agaggctggaaagggtagttggcgagtgggcagggcagaagtggggatggttaatgggtacaaaaaatagttacaaagaatgaataagatctggtatttgctagcacaacagggtgattatagtaaaataatttgtgtacatttaaaaataact-aaaagagtataattggattgtttataacacaaaggataagtggttgaggtgatgaatgtcctgtttaccctgatgtgattattattcattgcatgcctatatcaaaatatttcgtgtaacccgtaaatatagacac-cactttctacccaccagtattaacaaTAAAATAATAAAATAAAGTAGAGCAGAACTAGCAGACAATGACTGAAGGC-ACAGATGGCAAAGGAGGAGCAGGGAAATGACTGTCTGC-CTTCCTCCTGTTTCTACTCCAGCTTCCCTGTTCCAGCTCTTGCCATCTTGTACCCAAATGACTCGTAGATCCCAGCACTGCATCCTTAGCTAATGGTTTGTTCCACTGTTTTCATATACACCAAAGCTCTGCTATATGTGACCTTCTTGTATTCTCAGCAGTCCAAAATGTTAGTGTCTTATTTAAAATTTAGAATAAATATCAGACTCAGTAGCTGTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87947014 741 - 181584905 tcattatgttaaatgaaataaactgggcacagaagaacaaacttcctatcttctcacttaattgtgggagctaaaaatgaaaatgattgaact------cacagggagtagaaggctggttacc--agaggctggaaagggtagttggcgagtgggcagggcagaagtggggatggttaatgggtacaaaaaatagttacaaagaatgaataagatctggtgtttgctagcacaacagggtgattatagtaaaataatttgtgtacatttaaaaataact-aaaagagtataattggattgtttataacacaaaggataagtggttgaggtgatgaatgtcctgtttaccctgatgtgattattattcattgcatgcctatatcaaaatatttcgtgtaacccgtaaatatagacac-cactttctacccaccagtattaacaaTAAAATAATAAAATAAAGTAGAGCAGAACTAGCAGACAATGACTGAAGGC-ACAGATGGCAAAGGAGGAGCAGGGAAATGACTGTCTGC-CTTCCTCCTGTTTCTACTCCAGCTTCCCTGTTCCAGCTCTTGCCATCTTGTACCCAAATGACTCGTAGATCCCAGCACTGCATCCTTAGCTAATGGTTTGTTCCACTGTTTTCATATACACCAAAGCTCTGCTATATGTGACCTTCTTGTATTCTCAGCAGTCCAAAATGTTAGTGTCTTATTTAAAATTTAGAATAAATATCAGACTCAGTAGCTGTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1169811 741 - 8785636 tcattatgttaaatgaaataaactgggcacagaagaacaaacttcctatcttctcacttaattgtgggagctaaaaatgaaaatgattgaact------cacagggagtagaaggctggttacc--agaggctggaaagggtagttggcaagtgggcagggcagaagtggggatggttaatgggtacaaaaaatagttacaaagaatgaataagatctggtatttgctagcacaacagggtgattatagtaaaataatttgtgtacatttaaaaataact-aaaagagtataattggattgtttataacacaaaggataagtggttgaggtgatgaatgtcctgtttaccctgatgtgattattattcattgcatgcctatatcagaatatttcgtgtaacccgtaaatatagacac-cactttctacccaccagtattaacaaTAAAATAATAAAATAAAGTAGAGCAGAACTAGCAGACAATGACTGAAGGC-ACAGATGGCAAAGGAGGAGCAGGGAAATGACTGTCTGC-CTTCCTCCTGTTTCTACTCCAGCTTCCCTGTTCCAGCTCTTGCCATCTTGTACCCAAATGACTCATAGATCCCAGCACTGCATCCTTAGCTAATGGTTTGTTCCACTGTTTTCATATACACCAAAGCTCTGCTATATGTGACCTTCTTGTATTCTCAGCAGTCCAAAATGTTAGTGTCTTATTTAAAATTTAGAATAAATATCAGACTCAGTAGCTGTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1638144 741 + 27333823 tcattatgttaaatgaaataaactgggcacagaagaacaaacttcctatcttctcacttaattgtgggagctaaaaatgaaaatgattgaact------cacagggagtagaaggctggttacc--agaggctggaaagggtagttggcgagtgggcagggcagaagtggggatggttaatgggtacaaaaaatagttacaaagaatgaataagatctggtatttgctagcacaacagggtgattatagtaaaataatttgtgtacatttaaaaataact-aaaagagtataattggattgtttataacacaaaggataagtggttgaggtgatggatgtcctgtttaccctgatgtgattattattcattgcatgcctatatcaaaatatttcatgtaacccataaatatagacac-cactttctacccacaagtattaaaaaTAAAATAATAAAATAAAGTAGAGCAGAACTAGCAGACAATGACTGAAGGC-ACAGATGGCAAAGGAGGAGCAGGGAAATGACTGTCTGC-CTTCCTCCTGTTTCTACTCCAGCTTCCCTGTTCCAGCTCTTGCCATCTTGTACCCAAATGACTCGTAGATCCCAGCACTGCATCCTTAGCTAATGGTTTGTTCCACTGTTTTCATATACACCAAAGCTCTGCTATATGTGACCTTCTTGTATTCTCAGCAGTCCAAAATGTTAGTGTCTTATTTAAAATTTAGAATAAATATCAGACTCAGTAGCTGTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1908364 739 - 91010382 --attatgttaaatgaaataaactgggcacagaagaacaaacttcctatcttctcacttaattgtgggagctaaaaatgaaaatgattgaact------cacagggagtagaaagctggttacc--agaggctggaaagggtagttggcgaatgggcagggcagaagtgggaatggttaatggatacaaaaaatagttagaaagaatgagtaagacctggtatttgctagcacaacaggatgattatagtaaaataatttgtgtacatttaaaaataact-aaaagagtataattggattgtttgtaacacaaaggataaatggttgaggtgatggatgtcctgtttaccttgatgtgattattattcactgcatgcctatatcaaaatatttcatgtaacccgtaaatatagacac-cactttctacccacaagtattaacaaTAAAATAATAAAATAAAGTAGAGCAGAACTAGCAGACAATGACTGAAGGC-ACAGATGGCAAAGGAGGAGCAGGGGAATGACTGTCTGC-CTTCCTCCTATTTCTACTCCAGCTTCTCTGTTCCAGCTCTTGCCATCTTGTACCCAAATGACTTGTAGATCCCAGCACTGCATCCTTAGCTAATGGTTTGTTCCATTGTTTTCATACACACCAAAGCTCTGCAATATGTGACCTTCTTGTATTCTCAGCAGTCCAAAATGTTAGTGTCTTATTTAAAATTTAGAATAAATATCAGACTCAGTAGCTGTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2027480 741 + 5179401 tcattatgttaaatgaaataaactgggcacagaagaacaaacttcctatcttctcacttaattgtgggagctaaaaatgaaaatgattgaact------cacagggagtagaaggctggttacc--agaggctgggaagggtagttggcgagtgggcagggcagaagtggggatggttaatgggtacaaaaaatagttacaaagaatgaataagatctggtatttgctagcacaacagggtgattatagtaaaataatttgtgtacatttaaaaataact-aaaagagtataattggattgtttataacacaaaagataagtggttgaggtgatggatgtcctgtttaccctgatgtgattattattcattgcatgcctatatcaaaatatttcatgtaacccgtaaatatagacac-cactttctacccacaagtattaacaaTAAAATAATAAAATAAAGTAGAGCAGAACTAGCAGACAATGACTGAAGGC-ACAGATGGCAAAGGAGGAGCAGGGAAATGACTGTCTGC-CTTCCTCCTGTTTCTACTCCAGCTTCCCTGTTCCAGCTCTTGCCATCTTGTACCCAAATGACTCGTAGATCCCAGCACTGCATCCTTAGCTAATGGTTTGTTCCACTGTTTTCATATACACCAAAGCTCTGCTATATGTGACCTTCTTGTATTCTCAGCAGTCCAAAATGTTAGTGTCTTATTTAAAATTTAGAATAAATATCAGACTCAGTAGCTGTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7725496 741 - 21726897 tcattatgttaaatgaaataaactgggcacagaagaacaaacttcctatcttctcacttaattgtgggagctaaaaatgaaaatgattgaact------cacagggagtagaaggctggttacc--agaggctggaaagggtagttggcgagtgggcagggcagaagtggggatggttaatgggtacaaaaaatagttacaaagaatgaataagacctggtatttgctatcacaacagggtgattatagtaaaataatttgtgtacatttaaaaataact-aaaagagtgtaattggattgtttgtaacacaaaggataaatggttgaggtgatggatgtcctgtttaccctgatgtgattattatccattgcatgcctatatcaaaatatttcatgtaacccataaatatagacac-cactttctacccacaagtattaacaaTAAAATAATAAAATAAAGTAGAGCAGAACTAGCAGACAATGACTGAAGGC-ACAGATGGCAAAGGAGGAGCAGGGAAATGACTGTCTGC-CTTCCTCCTATTTCTACTCCAGCTTCCCTGTTCCAGCTCTTGCCGTCTTGTACCCAAATGACTCGTAGATCCCAGCACTGCATCCTTAGCTAATGGTTTGTTCCATTGTTTTCATATACACCAAAGCTCTGCTATATGTGACCTTCTTGTATTCTCAGGAGTCCAAAATGTTAGTGTCTTATTTAAAATTTAGAATAAATATCAGACTCAGTAGCTGTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112542490 728 + 204313951 tcattttgttaaatgaaataagctgggcacagaagaacacacttcatatcttctaatttatttgtgggagctaaaaatgaaaataatt---------tacatagagaatagaaggttggttacc--agaggctgggaagagtagttggcgagtgggcagggtggaagtggggatggttaatgggtacaaaaaatag----aaagaatgaataagacccagtatttgctagcacaacagggtgactacagtaaaataatttgtgtacatttaaaaataact-aaaagagtatcattgaattgtttgtaacacaaaggataaatgcttggtatgaagactatcctgtttatcctgatatgattattattcattgcatgcctgtatcaaaatattttatgtaacccataaatatagacacctactatctacctacaaaaattaacaaTAAAATAATAAAATAAAATTGAGTGGAACCAG----CCATGACTTAAGAT-ACAGATGGCAAAGGAGGATCAGGGGAATGACTGTCTGCCCTTCCTCCTCTTTCTACTCCATCATC-CTATTTCAGTTCTTTCCATCTTGGACCCAAATGACTCATAGATCCCTCTGCCGACTCCTTAGCTAATAGTTTGTTCCATTGTTTTCATATACACCAAAACTCCGCTATATGTGACCT---TGTATTCTCAGCAGTCCAAAATGTAAATGTCTTATTTAAAATTTAGAATAAATATTGGACTCAGTTGCTGTC i calJac3.chr2 C 0 I 49 s saiBol1.JH378106 44990779 738 + 71252344 tcattgtgttaaatgaaataagctgggcacagaagaacaaacttcatatcttctaatttatttgtgggagctaaaaatgaaaataattgaactcatagacatagggagtagaaggttggttacc--agaggctgggaagggtagttggcgagtgggcagggtaaaagtggcgatggttaataggaacaaaaaatag----aaagaatgaataagacccagtatttgctagcacaacagggtgactacagtaaaataatttgtgtacatttaaaaataact-aaaagagtataattgaattgtttgtaacacaaaggatacatgcttggtatgatgaatatcctgtttatcctgatatgattattattcattgcatgcctgtatcaaaatatttcatgtaacccataaatatagacacctactatctacctacaaaaattaacaaTAAAACAATAAAATAACATAGAGCAGAACCAG----CAATGACTTAAGATAACAGATGGCAAAGGAGGAGCAGGGGAATGACTGTCTGCCCTTCCTCCTATTTCTACTCCAGCATC-CTATTTCAGTTCTTTCCGTCTTGGACCCAAATGACTGATAGATCCCTCTGCCGACTCCTTAGCTAATGGTTTGTTCCATTGTTTTCATATACACCAAAGCTCCACTGTATGTGACCT---TGTATTCTCAGCAGTCCAAAATGTAAATGTCTTATTTAAAATTTGGAATAAATATTGGACTCAGTAGCTGTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 354517 731 - 1393929 tcattatgttaaatgaaataagctgggcacagaagaacaaattttacatcttctaatttatttgtgggagctaaaaatgaaaataattgaact------catagggagtagaaggttggttacc--agaggctgggaggggtagttggtgagtggccagggtggaagtgaggatggttaatgggtacaaaaaatag----aaagaatgcataagacccaatatttgctagtacaacagggtgactacagtaaaataatttgtgtacatttaaaaataact-aaaagagtataattgaattgtttgtaacacaaaggataaatgcttggtatgatgaatatcctgtttatcctgatatgatgattattcattgcatgcctgtatcaaaatatttcatgtaacccataaatatagacacctactatctacctacacaagttaacaaTAAAACAATAAAATAAAATAGAGCAGAACCAG----CAATGACTTAAGAT-ACAGATGGCAAAGTAGGAGCAGGGGAATGACTGTGTGCCCTTCCTCCTATTTCTACTCCAGCATC-CTATTTCAGTTCTTTCCATCTTGGACCCAAATGACTGATAGATCCCTCTGCCAACTCCTTAGCTAATTGTTTGTTCCATTGTTTTCATATACACCAAATCTCCACTATATGTGACCT---TGTATTCTCAGCAGTCCAAAATGTAAATGTCTTATTTAAAATTTAGCATAAATATTGGACTCAGTAGCTGTC i cebCap1.NW_016107830v1 I 54 C 0 s aotNan1.NW_018506370v1 1431005 726 - 15889662 tcattatgttaaatgaaata----------agaagaataaacttcatatcttctaatttatttgtgggagctaaaaatgaaaataattgaactcacagacatagggagtagaaggttggttactagagaggctgggaagggtagttgacgagtgggcagggtggaagtggggatggttaatcggtacaaaaaacag----aaagaatgaataagacccagtatttgctagcacaacagggtgactacagtaaaataatttgtgtacatttaaaaagaact-aaacgagtataattgaattgtttgtaacacaagggataaatgcttgatatgatgaatatcctgtttatcctgatatgattattattcattgcatacctgtatcaaaatatttcatgtaacccataaatatagacac---ctatctacctacaaaaattaacaaTAAAACAATAAAATAAAATAGAGCAGAACCAG----CAATGACTTAAGAT-ACAGATGGCAAAGGAGGAGCAGGGGAATGACTGTTTGCTCTTCCTCCTATTTCTACTCCAGCATC-CTATTTCAGTTCTTTCCATCTTGGACCCAAATGACTGATAGATCCCTCTGCTGACTCCTTAGCTAATGGTTTGTTCCATTGTTTTCATATACACCAAAGCTCCACTATATGTGACCT---TGTATTCTCAGCAGTCCAAAATGTAAATGTCTTGTTTAAAACTTAGAATAAATATTGGACTCAGTAGCTGTC i aotNan1.NW_018506370v1 I 50 C 0 e canFam3.chr3 14322655 0 + 91889043 C e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I a score=117495.000000 s hg38.chr5_GL383530v1_alt 51494 12 + 101241 CAAAAATTCTAG s panTro5.chr5 20284380 12 + 181907262 CAAAAATTCTAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296678 12 + 183735486 CAAAAATTCTAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783471 12 - 13748885 CAAAAATTCTAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819715 12 - 163208435 CAAAAATTCTAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843335 12 - 180051392 CAAAAATTCTAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87947755 12 - 181584905 CAAAAATTCTAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170552 12 - 8785636 CAAAAATTCTAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1638885 12 + 27333823 CAAAAATTCTAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909103 12 - 91010382 CAAAAATTCTAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028221 12 + 5179401 CAAAAATTCTAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726237 12 - 21726897 CAAAAATTCTAG i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 44991517 12 + 71252344 CAAAAATTCTAG i saiBol1.JH378106 C 0 I 6 s cebCap1.NW_016107830v1 355248 12 - 1393929 CAAAAATTCTAG i cebCap1.NW_016107830v1 C 0 I 30 s aotNan1.NW_018506370v1 1431731 12 - 15889662 CAAAAATTCTAG i aotNan1.NW_018506370v1 C 0 I 3 e canFam3.chr3 14322655 0 + 91889043 C e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I e calJac3.chr2 112543218 49 + 204313951 I a score=153619.000000 s hg38.chr5_GL383530v1_alt 51506 28 + 101241 GGTCAAATGAAAAAGATCTATACAAAAA s panTro5.chr5 20284392 28 + 181907262 GGTCAAATGAAAAAGATCTATACAAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296690 28 + 183735486 GGTCAAATGAAAAAGATCTATACAAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783483 28 - 13748885 GGTCAAATGAAAAAGATCTATACAAAAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819727 28 - 163208435 GGTCAAATGAAAAAGATCTATACAAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843347 28 - 180051392 AAGCAAATGAAAAAGATCTATACAAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87947767 28 - 181584905 AAGCAAATGAAAAAGATCTATACAAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170564 28 - 8785636 AAGCAAGTGAAAAAGATCTATACAAAAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1638897 28 + 27333823 AAGCAAATGAAAAAGATCTATACAAAAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909115 28 - 91010382 AAGCAAATGAAAAAGATCTATACAAAAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028233 28 + 5179401 AAACAAATGAAAAAGATCTATACAAAAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726249 28 - 21726897 AAGCAAATGAAAAAGATCTATACAAAAA i colAng1.NW_012115488v1 C 0 C 0 e canFam3.chr3 14322655 0 + 91889043 C e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I e aotNan1.NW_018506370v1 1431743 3 - 15889662 I e cebCap1.NW_016107830v1 355260 30 - 1393929 I e saiBol1.JH378106 44991529 6 + 71252344 I e calJac3.chr2 112543218 49 + 204313951 I a score=14312.000000 s hg38.chr5_GL383530v1_alt 51534 4 + 101241 AGAA s panTro5.chr5 20284420 4 + 181907262 AGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296718 4 + 183735486 AGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783511 4 - 13748885 AGAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819755 4 - 163208435 AGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843375 4 - 180051392 AGAA i rheMac8.chr6 C 0 I 2 s macFas5.chr6 87947795 4 - 181584905 AGAT i macFas5.chr6 C 0 I 2 s macNem1.NW_012011400v1 1170592 4 - 8785636 AGAA i macNem1.NW_012011400v1 C 0 I 2 s cerAty1.NW_012002401v1 1638925 4 + 27333823 AGAA i cerAty1.NW_012002401v1 C 0 I 2 s chlSab2.chr4 1909143 3 - 91010382 AGA- i chlSab2.chr4 C 0 I 2 s manLeu1.NW_012103732v1 2028261 3 + 5179401 AGA- i manLeu1.NW_012103732v1 C 0 I 2 s colAng1.NW_012115488v1 7726277 4 - 21726897 AGAA i colAng1.NW_012115488v1 C 0 I 2 s canFam3.chr3 14322655 4 + 91889043 AGAG i canFam3.chr3 C 0 C 0 e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462437 235 + 120421639 I e otoGar3.GL873536 1305518 1 - 29863360 I e aotNan1.NW_018506370v1 1431743 3 - 15889662 I e cebCap1.NW_016107830v1 355260 30 - 1393929 I e saiBol1.JH378106 44991529 6 + 71252344 I e calJac3.chr2 112543218 49 + 204313951 I a score=49122.000000 s hg38.chr5_GL383530v1_alt 51538 14 + 101241 ---TTTTTTTATA--A-------------AAA s panTro5.chr5 20284424 14 + 181907262 ---TTTTTTTACA--A-------------AAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296722 14 + 183735486 ---TTTTTTTACA--A-------------AAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783515 14 - 13748885 ---TTTTTTAATA--A-------------AAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819759 14 - 163208435 ---TTTTTTTAAA--A-------------AAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843381 14 - 180051392 ---TTTTTTTTAA--A-------------AAA i rheMac8.chr6 I 2 C 0 s macFas5.chr6 87947801 16 - 181584905 ---TTTTTTTTTTAAA-------------AAA i macFas5.chr6 I 2 C 0 s macNem1.NW_012011400v1 1170598 14 - 8785636 ---TTTTTTTTTT--T-------------AAA i macNem1.NW_012011400v1 I 2 C 0 s cerAty1.NW_012002401v1 1638931 14 + 27333823 ---TTTTTTTAAA--A-------------AAA i cerAty1.NW_012002401v1 I 2 C 0 s chlSab2.chr4 1909148 14 - 91010382 ---TTTTTTTAAA--A-------------AAA i chlSab2.chr4 I 2 C 0 s manLeu1.NW_012103732v1 2028266 14 + 5179401 ---TTTTTTTAAA--A-------------AAA i manLeu1.NW_012103732v1 I 2 C 0 s colAng1.NW_012115488v1 7726283 12 - 21726897 ---TTTTTT--AA--A-------------AAA i colAng1.NW_012115488v1 I 2 C 0 s mm10.chr13 76462672 27 + 120421639 ---TTTTTTTATA--ACTGTTTCTTTGCGAAG i mm10.chr13 I 235 C 0 s canFam3.chr3 14322659 14 + 91889043 GTATTTCTTTAAA--A---------------- i canFam3.chr3 C 0 C 0 e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e otoGar3.GL873536 1305518 1 - 29863360 I e aotNan1.NW_018506370v1 1431743 3 - 15889662 I e cebCap1.NW_016107830v1 355260 30 - 1393929 I e saiBol1.JH378106 44991529 6 + 71252344 I e calJac3.chr2 112543218 49 + 204313951 I a score=479780.000000 s hg38.chr5_GL383530v1_alt 51552 70 + 101241 AGTAGGGTGAATGGAGTTAGCTATGTCAAATACCCAGATTTGGTTGTCATT--ATAGCACCACGGAGACACC s panTro5.chr5 20284438 70 + 181907262 AGTAGGGTGAATGGAGTTAGCTATGTCAAATACCCAGATTTGGTTGTCATT--ATAGCACCACGGAGACACC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296736 70 + 183735486 AGTAGGGTGAATGGAGTTAGCTATGTCAAATACCCAGATTTGGTTGTCATT--ATAGCACCACGGAGACACC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783529 70 - 13748885 AGTAGGGTGAATGGAGTTAGCTATGTCAAATATCCAGATTTGGTTGTCATT--ATAGCACCACGGAGACACC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819773 70 - 163208435 AGTAGGGTGAATGGAGTTAGCTATGTCAAATACTCAGATTTGGTTGTCATT--GTAGCACCACGGAGACACC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843395 70 - 180051392 AGTAGGGTGAATGCAGATAGCTATGTCAGATACTCAGATTTGCTTGTCATT--ATAGCACCACGGAGACACC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87947817 70 - 181584905 AGTAGGGTGAATGCAGATAGCTATGTCAGATACTCAGATTTGCTTGTCATT--ATAGCACCACGGAGACACC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170612 70 - 8785636 AGTAGGGTGAATGCAGATAGCTATGTCAGATACTCAGATTTGCTTGTCATT--ATAGCACCACGGAGACACC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1638945 70 + 27333823 AGTAGGGTGAATGCAGATAGCTATGTCAGATACTCAGATTTGCTTGTCATT--ATAGCACCACGGAGACACC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909162 70 - 91010382 AGTAGAGTGAATGGAGATAGCTATGTCAGATACTCAGATTTGCTTGTCATT--ATAGCACCACGGAGACACC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028280 70 + 5179401 AGTAGGGTGAATGCAGATAGCTATGTCAGATACTCAGATTTGCTTGTCATT--ATAGCACCACGGAGACACC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726295 70 - 21726897 AGTAGGGTGAATGGAGATAGCTATGTCAGATACTCAGATTTGCTTGTCATT--ATAGCACCACGGAGACACC i colAng1.NW_012115488v1 C 0 C 0 s otoGar3.GL873536 1305519 71 - 29863360 AATGAAGTGGATGGAGATCACCATGCCAGATACTCAATCAGGATCATTCCTGGGTAGCATTGTGGAGA-ACC i otoGar3.GL873536 I 1 I 1 s mm10.chr13 76462699 67 + 120421639 TACACGGTAAA--GAGGGAGCTGTATTGGATACTTAAATTTGATTGTTAC---ATAGAATTGTTGGAGTAGC i mm10.chr13 C 0 I 1 s canFam3.chr3 14322673 69 + 91889043 AGTAGAATGGTTGGAGAGAACTGTGTCAGATACTCAGATCTGATTTTTAT---ATAGCATTATGGAGAAGCA i canFam3.chr3 C 0 C 0 e micMur3.chr12 84835202 227 + 108143057 I e proCoq1.NW_012147189v1 605459 105 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e aotNan1.NW_018506370v1 1431743 3 - 15889662 I e cebCap1.NW_016107830v1 355260 30 - 1393929 I e saiBol1.JH378106 44991529 6 + 71252344 I e calJac3.chr2 112543218 49 + 204313951 I a score=149679.000000 s hg38.chr5_GL383530v1_alt 51622 27 + 101241 TGAAACAATCTAAATTA-AGTCTGAGGA s panTro5.chr5 20284508 27 + 181907262 TGAAACAATCTAAATTA-AGTCTGAGGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296806 27 + 183735486 TGAAACAATCTAAATTA-AGTCTGAGGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783599 27 - 13748885 TGAAACAATCTAAATTA-AGTCTGAGGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819843 27 - 163208435 TGAAACAATCTAAATTA-AGTCTGAGGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843465 22 - 180051392 TGAAACAATCTAAA------TCTGAGGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87947887 22 - 181584905 TGAAACAATCTAAA------TCTGAGGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170682 22 - 8785636 TGAAACAATCTAAA------TCTGAGGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639015 22 + 27333823 TGAAACAATCTAAA------TCTGAGGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909232 22 - 91010382 TGAAGCAATCTAAA------TCTGAGGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028350 22 + 5179401 TGAAACAATCTAAA------TCTGAGGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726365 22 - 21726897 TGAAACAATCTAAA------TCTGAGGA i colAng1.NW_012115488v1 C 0 C 0 s proCoq1.NW_012147189v1 605564 27 - 10520994 TGAAGCAATCCAAACTA-AGTCCAAGGA i proCoq1.NW_012147189v1 I 105 C 0 s otoGar3.GL873536 1305591 27 - 29863360 GGAAGCAATCCAAATTA-AGTCAAAGGA i otoGar3.GL873536 I 1 C 0 s mm10.chr13 76462767 27 + 120421639 TGAATCAACCTTCATTA-AATCCAAGTT i mm10.chr13 I 1 C 0 s canFam3.chr3 14322742 28 + 91889043 TGAAGGAATCCAAATTATACTCTAAGAG i canFam3.chr3 C 0 C 0 e micMur3.chr12 84835202 227 + 108143057 I e dasNov3.JH570378 1241123 1782 - 11655695 I e aotNan1.NW_018506370v1 1431743 3 - 15889662 I e cebCap1.NW_016107830v1 355260 30 - 1393929 I e saiBol1.JH378106 44991529 6 + 71252344 I e calJac3.chr2 112543218 49 + 204313951 I a score=29898.000000 s hg38.chr5_GL383530v1_alt 51649 3 + 101241 AAA s panTro5.chr5 20284535 3 + 181907262 AAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296833 3 + 183735486 AAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783626 3 - 13748885 AAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819870 3 - 163208435 AAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843487 3 - 180051392 AAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87947909 3 - 181584905 AAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170704 3 - 8785636 AAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639037 3 + 27333823 AAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909254 3 - 91010382 AAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028372 3 + 5179401 AAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726387 3 - 21726897 AAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543267 3 + 204313951 AAG i calJac3.chr2 I 49 C 0 s proCoq1.NW_012147189v1 605591 3 - 10520994 AAG i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1305618 3 - 29863360 AAG i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76462794 3 + 120421639 AAG i mm10.chr13 C 0 C 0 s canFam3.chr3 14322770 3 + 91889043 AAG i canFam3.chr3 C 0 C 0 e micMur3.chr12 84835202 227 + 108143057 I e dasNov3.JH570378 1241123 1782 - 11655695 I e aotNan1.NW_018506370v1 1431743 3 - 15889662 I e cebCap1.NW_016107830v1 355260 30 - 1393929 I e saiBol1.JH378106 44991529 6 + 71252344 I a score=69092.000000 s hg38.chr5_GL383530v1_alt 51652 6 + 101241 CTCTAA s panTro5.chr5 20284538 6 + 181907262 CTCTAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296836 6 + 183735486 CTCTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783629 6 - 13748885 CTCTAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819873 6 - 163208435 CTCTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843490 6 - 180051392 TTCTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87947912 6 - 181584905 TTCTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170707 6 - 8785636 TTCTAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639040 6 + 27333823 TTCTAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909257 6 - 91010382 TTCTAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028375 6 + 5179401 CTCTAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726390 6 - 21726897 TTCTAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543270 6 + 204313951 CTCTAA i calJac3.chr2 C 0 C 0 s aotNan1.NW_018506370v1 1431746 6 - 15889662 CTCTAA i aotNan1.NW_018506370v1 I 3 C 0 s proCoq1.NW_012147189v1 605594 6 - 10520994 CTCTAA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1305621 6 - 29863360 CCCCAA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76462797 6 + 120421639 CTCTAC i mm10.chr13 C 0 C 0 s canFam3.chr3 14322773 6 + 91889043 CTCTAA i canFam3.chr3 C 0 C 0 e micMur3.chr12 84835202 227 + 108143057 I e dasNov3.JH570378 1241123 1782 - 11655695 I e cebCap1.NW_016107830v1 355260 30 - 1393929 I e saiBol1.JH378106 44991529 6 + 71252344 I a score=217469.000000 s hg38.chr5_GL383530v1_alt 51658 26 + 101241 TCCTTAAAGTCT-GAAAAAGAGTAGAA------------------------------------------- s panTro5.chr5 20284544 26 + 181907262 TCCTTAAAGTCT-GAAAAAGAGTAGAA------------------------------------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296842 26 + 183735486 TCCTTAAAGTCT-GAAAAAGAGTAGAA------------------------------------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783635 26 - 13748885 TCCTTAAAGTCT-GAAAAAGAGTGGAA------------------------------------------- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819879 26 - 163208435 TCCTTAAAGTCT-GAAAAAGAGTAGAA------------------------------------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843496 26 - 180051392 TCCTTAAGGTCT-GAAACAAAGTAAAA------------------------------------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87947918 26 - 181584905 TCCTTAAGGTCT-GAAACAAAGTAAAA------------------------------------------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170713 26 - 8785636 TCCTTAAGGTCT-GAAACAAAGTAAAA------------------------------------------- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639046 26 + 27333823 TCCTTAAGGTCT-GAAAAAAAGTAAAA------------------------------------------- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909263 26 - 91010382 TCCTTAAGGTCT-GAAAAAAAGTAAAA------------------------------------------- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028381 26 + 5179401 TCCTTAAGGTCT-GAAAAAAAGTAAAA------------------------------------------- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726396 26 - 21726897 TCCTCAAGGTCT-GAAAAAAAGTAAAA------------------------------------------- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543276 21 + 204313951 TCCTTAAGGTCT-GAAAAAGAA------------------------------------------------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44991535 21 + 71252344 TCCTTAAGGTCT-GAAAAAGAA------------------------------------------------ i saiBol1.JH378106 I 6 C 0 s aotNan1.NW_018506370v1 1431752 21 - 15889662 TCCTTAAGGTCT-GAAAAAGAA------------------------------------------------ i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 605600 26 - 10520994 TCCTACAGGTCT-AAAAAAGAATAGAA------------------------------------------- i proCoq1.NW_012147189v1 C 0 I 62 s otoGar3.GL873536 1305627 27 - 29863360 TCCTAGAGGTCTAAAAAAAGAATGGAA------------------------------------------- i otoGar3.GL873536 C 0 I 63 s mm10.chr13 76462803 26 + 120421639 ACCTTATGCTGA-GAAAATGGATAGCA------------------------------------------- i mm10.chr13 C 0 C 0 s canFam3.chr3 14322779 69 + 91889043 TTCTTAATATCT-GAAAAAGAAGGAAACTCATCACTCAATGAAGCCTCCATCGACAGCTACTTAATAGGC i canFam3.chr3 C 0 C 0 e micMur3.chr12 84835202 227 + 108143057 I e dasNov3.JH570378 1241123 1782 - 11655695 I e cebCap1.NW_016107830v1 355260 30 - 1393929 I a score=10424.000000 s hg38.chr5_GL383530v1_alt 51684 1 + 101241 A s panTro5.chr5 20284570 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296868 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783661 1 - 13748885 A i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819905 1 - 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843522 1 - 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87947944 1 - 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170739 1 - 8785636 A i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639072 1 + 27333823 A i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909289 1 - 91010382 A i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028407 1 + 5179401 A i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726422 1 - 21726897 A i colAng1.NW_012115488v1 C 0 C 0 s micMur3.chr12 84835429 1 + 108143057 A i micMur3.chr12 I 227 C 0 s proCoq1.NW_012147189v1 605688 1 - 10520994 A i proCoq1.NW_012147189v1 I 62 C 0 s otoGar3.GL873536 1305717 1 - 29863360 G i otoGar3.GL873536 I 63 C 0 s mm10.chr13 76462829 1 + 120421639 A i mm10.chr13 C 0 I 91 s canFam3.chr3 14322848 1 + 91889043 A i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 1241123 1782 - 11655695 I e aotNan1.NW_018506370v1 1431773 0 - 15889662 C e cebCap1.NW_016107830v1 355260 30 - 1393929 I e saiBol1.JH378106 44991556 0 + 71252344 C e calJac3.chr2 112543297 0 + 204313951 C a score=9090.000000 s hg38.chr5_GL383530v1_alt 51685 1 + 101241 T s panTro5.chr5 20284571 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296869 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783662 1 - 13748885 T i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819906 1 - 163208435 T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843523 1 - 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87947945 1 - 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170740 1 - 8785636 T i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639073 1 + 27333823 T i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909290 1 - 91010382 T i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028408 1 + 5179401 T i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726423 1 - 21726897 T i colAng1.NW_012115488v1 C 0 C 0 s micMur3.chr12 84835430 1 + 108143057 T i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 605689 1 - 10520994 T i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1305718 1 - 29863360 C i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14322849 1 + 91889043 T i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462830 91 + 120421639 I e aotNan1.NW_018506370v1 1431773 0 - 15889662 C e cebCap1.NW_016107830v1 355260 30 - 1393929 I e saiBol1.JH378106 44991556 0 + 71252344 C e calJac3.chr2 112543297 0 + 204313951 C a score=706847.000000 s hg38.chr5_GL383530v1_alt 51686 54 + 101241 ------------AGCCCATCTCGTTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GGTGATTTAT------- s panTro5.chr5 20284572 54 + 181907262 ------------AGCCCATCTCATTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GGTGATTTAT------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296870 54 + 183735486 ------------AGCCCATCTCATTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GGTGATTTAT------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783663 54 - 13748885 ------------AGCCCATCTCGTTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GGTGATTTAT------- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819907 54 - 163208435 ------------AGCCCATCTCGTTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GGTGATTTAT------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843524 51 - 180051392 ------------ATCC---CTTGTTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GGTGATTCAT------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87947946 51 - 181584905 ------------ATCC---CTTGTTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GGTGATTCAT------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170741 51 - 8785636 ------------ATCC---CTTGTTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GGTGATTCAT------- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639074 51 + 27333823 ------------ATCC---CTTGTTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GGTGATTCAT------- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909291 51 - 91010382 ------------ATCC---CTTGTTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GGTGATTCAT------- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028409 50 + 5179401 ------------ATCC---CTTGTTCGA-GCCATCCTAGAATTTTCTAAGTTTTTA-GGTGATTCAT------- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726424 51 - 21726897 ------------ATCC---CTTGTTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GGTGATTCAT------- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543297 54 + 204313951 ------------AGCCCATCTCGTTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GGTGATTTGC------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44991556 54 + 71252344 ------------AGCCCATCTCGTTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GATGATTTGC------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 355290 54 - 1393929 ------------AGCCCATCTTGTTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GGTGATTTGC------- i cebCap1.NW_016107830v1 I 30 C 0 s aotNan1.NW_018506370v1 1431773 54 - 15889662 ------------AGCCCATCTCGTTCGAGGCCATCCTAGAATTTTCTAAGTTTTTA-GATGATTTGT------- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84835431 54 + 108143057 ------------AGCCCATCTTGTTTGAGGCAATCCTAGAATTTTCTAAGTTTTTA-GGTGATTTGT------- i micMur3.chr12 C 0 I 17 s proCoq1.NW_012147189v1 605690 54 - 10520994 ------------AGCCCATTTTGTTTGAGGCTATCCTAGAATTTTCTAAGTTTTGG-GGTGATTTAT------- i proCoq1.NW_012147189v1 C 0 I 19 s otoGar3.GL873536 1305719 54 - 29863360 ------------AGCCCATCTCATTTGAGGCCATGCTAGAATTTTCTAAGTGTTTA-GGTGATTTAC------- i otoGar3.GL873536 C 0 I 7 s canFam3.chr3 14322850 73 + 91889043 TTCCCGTTTCTATACTCATTATCTTTCAGGCTATTTT-GAATTTTCTAAGTTTTTAGGGTAATGTATATTTCAT i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462830 91 + 120421639 I a score=45981.000000 s hg38.chr5_GL383530v1_alt 51740 6 + 101241 CGCCGT s panTro5.chr5 20284626 6 + 181907262 TGCTGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296924 6 + 183735486 TGCTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783717 6 - 13748885 CGCCGT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819961 6 - 163208435 CGCCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843575 6 - 180051392 TGCCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87947997 6 - 181584905 TGCCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170792 6 - 8785636 TGCCTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639125 6 + 27333823 TGCCTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909342 6 - 91010382 TGCCTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028459 6 + 5179401 TGCCTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726475 6 - 21726897 TGCCTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543351 6 + 204313951 TGCCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44991610 6 + 71252344 TGCCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 355344 6 - 1393929 TGCCTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1431827 6 - 15889662 TGCCTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84835502 2 + 108143057 TG---- i micMur3.chr12 I 17 C 0 s otoGar3.GL873536 1305780 3 - 29863360 TGC--- i otoGar3.GL873536 I 7 C 0 s canFam3.chr3 14322923 6 + 91889043 TACCTT i canFam3.chr3 C 0 C 0 e proCoq1.NW_012147189v1 605744 19 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462830 91 + 120421639 I a score=147663.000000 s hg38.chr5_GL383530v1_alt 51746 11 + 101241 CCTGGAATAGG s panTro5.chr5 20284632 11 + 181907262 CCTGGAATAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296930 11 + 183735486 CCTGGAATAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783723 11 - 13748885 CCTGGAATAGG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819967 11 - 163208435 CCTGGAATAGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843581 11 - 180051392 CCTGGAATAGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948003 11 - 181584905 CCTGGAATAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170798 11 - 8785636 CCCGGAATAGG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639131 11 + 27333823 CCTGGAATAGG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909348 11 - 91010382 CCTGGAATAGG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028465 11 + 5179401 CCTGGAATAGG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726481 11 - 21726897 CCTGGAATAGG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543357 11 + 204313951 CCTGGAATAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44991616 11 + 71252344 CCTGGAATAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 355350 11 - 1393929 CCTGGAATAGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1431833 11 - 15889662 CCTGGAATAGA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84835504 11 + 108143057 CCTGGAACATG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 605763 11 - 10520994 CCTGGAACATG i proCoq1.NW_012147189v1 I 19 C 0 s otoGar3.GL873536 1305783 5 - 29863360 ------CTATG i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14322929 11 + 91889043 CCTAGAACATA i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 1241123 1782 - 11655695 I e mm10.chr13 76462830 91 + 120421639 I a score=544384.000000 s hg38.chr5_GL383530v1_alt 51757 43 + 101241 GGAAGTACTCATGTATTTGCAGAGTCAAATTCAATGGAATTTC s panTro5.chr5 20284643 43 + 181907262 GGAAGTACTCATGTATTTGCAGAGTCAAATTCAATGGAATTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296941 43 + 183735486 GGAAGTACTCATGTATTTGCAGAGTCAAATTCAATGGAATTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783734 43 - 13748885 GGAAGTACTCACGTATTTGCAGAGTCAAATTCAATGGAATTTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53819978 43 - 163208435 AGAAGTACTCATGTATTTGCAGAGTCAAATTCAATGGAATTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843592 43 - 180051392 GGAAGTATTCGTGTATTTGCAGAGTCAAATTCAATTGAATTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948014 43 - 181584905 GGAAGTATTCGTGTATTTGCAGAGTCAAATTCAATTGAATTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170809 43 - 8785636 GGAAGTATTCGTGTATTTGCAGAGTCAAATTCAATTGAATTTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639142 43 + 27333823 GGAAGTATTCATGTATTTGCAGAGTCAAATTCAATTGAATTTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909359 43 - 91010382 GGAAGAATACATGTATTTGCAGAGTCAAATTCAATTGAATTTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028476 43 + 5179401 GGAAGTATTCATGTATTTGCAGAGTCAAATTCAATTGAATTTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726492 43 - 21726897 GGAAGTATTCATGTATTTGCAGAGTCAAATTCAATTGAATTTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543368 43 + 204313951 GGAGGTGCTTATGTATTTGCAGAATCAAGTTCAATTGAATTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44991627 43 + 71252344 GGAGGTACTTATGTATTTGCAGAATCAAGTTCAATTGAATTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 355361 43 - 1393929 GGAGGTACTTATGTATTTGCAGAATCAAGTTCAACTGAATTTC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1431844 43 - 15889662 GGACATACTTATGTATTTGCAGAATCAAGTTCAATTGAATTTC i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84835515 43 + 108143057 GGAAGTAATCATATATTTTCAGAATCAAATTAAATTGAATTTC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 605774 43 - 10520994 GGAAGTAATCACATATTTGCAGAATCAAATTAAATTGAATTTC i proCoq1.NW_012147189v1 C 0 I 45 s otoGar3.GL873536 1305788 43 - 29863360 GCAAATCATCATATATTGGCAGAATCAAATAAAACTGTATTTC i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76462921 43 + 120421639 GAACACACAAGTACATTTGCAGAATCAGGTTCAGTTCCATTTG i mm10.chr13 I 91 C 0 s canFam3.chr3 14322940 7 + 91889043 GGAAGAA------------------------------------ i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 1241123 1782 - 11655695 I a score=497436.000000 s hg38.chr5_GL383530v1_alt 51800 45 + 101241 CCCCACTCAGCAACACTCTT-GGAATGGCACTACCCCTTAGTGTTA s panTro5.chr5 20284686 45 + 181907262 CCCCACTCAGCAACACTCTT-GGAATGGCACTGCCCCTTAGTGTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20296984 45 + 183735486 CCCCACTCAGCAACACTCTT-GGAATGGCACTGCCCCTTAGTGTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783777 45 - 13748885 CCCCACTCAGCAACACTCTT-GGAATGGCACTACCCCTTAGTGTTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820021 46 - 163208435 CCCCACTCAGCAACACTCTTGGGAATGGCACTACCCCTTAGTGTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843635 46 - 180051392 CCCCACTTAGCAACACTATTGGGAATGGCGCCACCCCTTAGTGTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948057 46 - 181584905 CCCCACTTAGCAACACTATTGGGAATGGCGCCACCCCTTAGTGTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170852 46 - 8785636 CCCCACTTAGCAACACTATTGGGAATGGCGCCACCCCTTAGTGTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639185 46 + 27333823 CCCCACTTAGCAACACTATTGGGAATGGCGCCACCCCTTAGTGTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909402 46 - 91010382 CCCCACTTAGCAACACTATTGGGAATGGCGCCACCCTTTAGTGTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028519 46 + 5179401 CCCCACTTAGCAACACTATTGGGAGTGGCGCCACCCCTTAGTGTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726535 46 - 21726897 CCCCACTTAGCAACACTATTGGGAATGGCGCCACCCCTTAGTGTTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543411 46 + 204313951 CCCCACTCAGCAACACTCTTGGGAATGGCACCACCCCATGGTGTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44991670 46 + 71252344 CCCCACTCAGCAACACTCCGGGGAATGGCACCACCCCGTAGTGTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 355404 46 - 1393929 CCCCACTCAGCAACACTCTTGGGAATGGCACCACCCCATGGTGTTA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1431887 46 - 15889662 CCCCACTCAGCAACACTATTGGGAATGGCACCACCCCATAGTGTTA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84835558 45 + 108143057 TACTTCTCAGCAACACTGTT-GGGATGGCCCCACCCCATAGCTCCT i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1305831 46 - 29863360 CAGTATTCCACAACATTGTTAGGAATGGCTCCACCCCATAGCTCCT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76462964 44 + 120421639 CTTTTCTCACTGACACT--TGAGAGTGGCCTCTTCTCCTACCTCCC i mm10.chr13 C 0 C 0 e canFam3.chr3 14322947 0 + 91889043 C e proCoq1.NW_012147189v1 605817 45 - 10520994 I e dasNov3.JH570378 1241123 1782 - 11655695 I a score=1597488.000000 s hg38.chr5_GL383530v1_alt 51845 130 + 101241 GCTGAA-------------------AGGTCAGGCCTAAGCTGAC----ACGTTGGTTTCTCCAGAAATG-TC------TTTTT---TCCCAGACA-----------AAGGAAAGCACATTCATAGCTGATG-ATCTGAGCCAAATATACGTTCTCTTGAGAATTTAAGCTGATGG s panTro5.chr5 20284731 130 + 181907262 GCTGAA-------------------AGGTCAGGCCTAAGCTGAC----ACGTTGGTTTCTCCAGAAATG-TC------TTTTT---TCCCAGACA-----------AAGGAAAGCGCATTCATAGCTGATG-ATCTGAGCCAAATATACGTTCTCTTGAGAATTTAAGCTGATGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297029 130 + 183735486 GCTGAA-------------------AGGTCAGGCCTAAGCTGAC----ACGTTGGTTTCTCCAGAAATG-TC------TTTTT---TCCCAGACA-----------AAGGAAAGCGCATTCATAGCTGATG-ATCTGAGCCAAGTATACGTTCTCTTGAGAATTTAAGCTGATGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783822 130 - 13748885 GCTGAA-------------------AGGTCAGGCCTAAGCTGAC----ACGTTGGTTTCTCCAGAAATG-TC------TTTTT---TCCTAGACA-----------AAGGAAAGCGCATTCATAGCTGATG-ATCTGAGCCAAATATACGTTCTCTTGAGAATTTAAGCTGATGG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820067 131 - 163208435 GCTGAA-------------------AGGTCAGGCCTAAGCTGAC----ACGTTGGTTTCTCCAGAAATGTTT------TTTTT---TCCCAGACA-----------AAGGAAAGCACATTAATAGCTGATG-ATCTGAGCCAAATGTATGTTTTCTTGAGAATTTAAGCTGATGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843681 126 - 180051392 GCTGAA-------------------AGGTCAGGCCTAAGCTGAC----ACGTTGGTTTCTCCAGACATG-TC------TTTTT---TCC----CA-----------AAGGAAAGCACATTCATAGCTGATG-ATCTGAGCCGAATATACGTTATCTTGAGAATTTAAGCTGATGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948103 126 - 181584905 GCTGAA-------------------AGGTCAGGCCTAAGCTGAC----ACGTTGGTTTCTCCAGACATG-TC------TTTTT---TCC----CA-----------AAGGAAAGCACATTCATAGCTGATG-ATCTGAGCCAAATATACGTTATCTTGAGAATTTAAGCTGATGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1170898 126 - 8785636 GCTGAA-------------------AGGTCAGGCCTAAGCTGAA----ACGTTGGTTTCTCCAGACATG-TC------TTTTT---TCC----CA-----------AAGGAAAGCACATTCATAGCTGATG-ATCTGAGCCAAATATACGTTATCTTGAGAATTTAAGCTGATGG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639231 126 + 27333823 GCTGAA-------------------AGGTCAGGCCTGAGCTGAC----ACGTTGGTTTCTCCAGACATG-TC------TTTTT---TCC----CA-----------AAGGAAAGCACATTCATAGCTGATG-ATCTGAGCCAAATATACGTTATCTTGAGAATTTAAGCTGATGG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909448 126 - 91010382 GCTGAA-------------------ACGTCAGGCCTAAGCTGAC----ACATTGGTTTCTCCAGACATG-TC------TTTTT---TCC----CA-----------AAGGAAAGCACATTCATAGCTAATG-ATCTGAGTCAAATATACGTTATCTTGAGAATTTAAGCTGATGG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028565 126 + 5179401 GCTGAA-------------------AGGTCAGGCCTAAGCTGAC----ACGTTGGTTTCTCCAGACATG-TC------TTTTT---TCC----CA-----------AAGGAAAGCACATTCATAGCTGATG-ATCTGAGCCAAATATACGTTATCTTGAAAATTTAAGCTGATGG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726581 126 - 21726897 GCTGAA-------------------AGGTCAGGCCTAAGCTGAC----ACGTTGGTTTCTCCAGACATG-TC------TTTTT---TCC----CA-----------AAGGAAAGCACATTCATAGCTGATG-ATCTGAGTCAAATATACGTTATGTTGAGAATTTAAGCTGATAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543457 128 + 204313951 GCTGAA-------------------AGGTCAGGCCTAGACTGAC----ATGTTGCTTTCTCCAGACATG-TC------TTTTT---TCCCAGAC-------------AGGAAAGCACATTTATAGCCGATG-ATCTGAGCCAAATATACGCTCTCTTGAGAATTTAAGCTGATGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44991716 129 + 71252344 GCTGAA-------------------AGGTCAGGTCTAGACTGAC----ATGTTGGTTTCTCCAGACATG-TC-----TTTTTT---TCCCAGAC-------------AGGAAAGCATATTTAAAGCCGATG-ATCTGAGCCAAATATATGCTCTCTTGAGAATTTAAGCTGATAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 355450 147 - 1393929 GCTGAAAGGTCAGGCCTAGACTGACAGGTCAGGCCTAGACTGAC----ATGTTAGTTTCTCCAGACATG-TC------TTTTT---TCCCAGAC-------------AGGAATGCACATTTATAGCCGATG-ATCTGAGCCAAATATATGCTCTCTTGAGAGTTTAAGCTGATGG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1431933 130 - 15889662 GCTGAA-------------------AGGTCAGGTCTAGACTGAC----ATGTTGGTTTCTCCAGACATG-TC----TTTTTTT---TCCTGGAC-------------AGGAAAGCACATTTATAGCCGATG-ATCTGAGCCAAATATATGCTCTCTTGAGAATTTAAGCTGATGG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84835603 139 + 108143057 GCTGAG-------------------AAGTCAGGCCTAAGCTGCC----AGGTTGGTTTCCCCAGAAGTG-TT------TTTTC---CCCCACACC--ACCTGAGTCAGAGGAAGCACATTCATAGTATATG-ATCTGTGCCAAATATATCTTCTCCTGAGAATTTGAGCTAAGGG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 605862 139 - 10520994 GCTGAA-------------------AAGTCAGGCCTAAGCTGCC----AGGTTGGTTTCTCCAGAAGTG-TC------TTTTT---TCCCACACC--ACCTGAGTCAGAGGAAGCACATTCATAGCACATG-ATTTGTGCCAAATTTATCTTCTCTTGAGAATTTAAGCTAAGGG i proCoq1.NW_012147189v1 I 45 C 0 s otoGar3.GL873536 1305877 139 - 29863360 GCCAAG-------------------AGGTCAGACCAAAGCTGCC----AGGTTGGTTTCTCCAGAAGTG-TC------TTTTT---TCCCACACA--AACCGAGTTAGAGGAAGCACATTCATAGCATATG-ATCTGTGCTAAATATATCTTTTCTTGTGAATTTAAGCTAAGGG i otoGar3.GL873536 C 0 I 367 s mm10.chr13 76463008 147 + 120421639 ATGGAA-------------------GGGTCAGACTTAAGCAGACTTAAGCATTAGTTTCTCAGGTTGTC-TCCCTCTCTTTCT---CCCCCCAGAGCATCTCAGACAGAGCAAGCTCA-TCATAGCATCTGAATGTGATACAAATAT----TTTCTCAAGAATTCAAGCAAAATA i mm10.chr13 C 0 C 0 s canFam3.chr3 14322947 118 + 91889043 -------------------------------------AAAAGAC----ATGTGTCTTTTTC---ATGTG-TC------TGTCTATGTCTCATAGACCACCTGAGTCAGAGGAAGCTTATTCACAGTAGACG-ATATGAACTAGATAAATTTTCTCTTGAGAAC-----CTGAGGG i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 1241123 1782 - 11655695 I a score=966174.000000 s hg38.chr5_GL383530v1_alt 51975 68 + 101241 TTTCTGAGGGTCTTACTAATTTAGTTGTCAGGAACAAAAGGATCA---------GGTCAGGT-GAAAATGGAGTCTCC s panTro5.chr5 20284861 68 + 181907262 TTTCTGAGGGTCTTACTAATTTAGTTGTCAGGAACAAAAGGATCA---------GGTCAGGT-GAAAATGGAGTCTCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297159 68 + 183735486 TTTCTGAGGGTCTTACTAATTTAGTTGTCAGGAACAAAAGGATCA---------GGTCAGGT-GAAAATGGAGTCTCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4783952 68 - 13748885 TTTCTGAGGGTCTTACTAATTTAGTTGTCAGGAACAAAAGGATCA---------GGTCAGGT-GAAAATGGAGTCTCC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820198 68 - 163208435 TTTCTGAAGGTCTTACTAATGTAATTGTCAGGAACAAAAGAATCA---------GGTCAGGT-GAAAATGGAGTCTCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843807 68 - 180051392 TTTCTGAGGGTCTTACTAATTTAGTTGTCAGGAACAAAAGGATCA---------GGTCAGGT-GAAAATGGAGTCTCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948229 68 - 181584905 TTTCTGAGGGTCTTACTAATTTAGTTGTCAGGAACAAAAGGATCA---------GGTCAGGT-GAAAATGGAGTCTCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1171024 68 - 8785636 TTTCTGAGGGTCTTACTAATTTAGTTGTCAGGAACAAAAGGATCA---------GGTCAGGT-GAAAATGGAGTCTCC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639357 68 + 27333823 TTTCTGAGGGTCTTATTAATTTAGTTATCAGGAACAAAAGGATCA---------GGTCAGGT-GAAAATGGAGTCTCC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909574 68 - 91010382 TTTCTGAGGGTCTTATTAATTTAGTTGTCAGGAACAAAAGGATCA---------GGTCAGGT-GAAAATGGAGTCTCC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028691 68 + 5179401 TTTCTGAGGGTCTTATTAATTTAGTTGTCAGGAACAAAAGGATCA---------GGTCAGGT-GAAAATGGAGTCTCC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726707 68 - 21726897 TTTCTGAGGGTCTTATTAATTTAGTTGTCAGGAACAAAAGGATCA---------GGTCAGGT-GAAAATGGAGTCTCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543585 68 + 204313951 TTTCTGAGGGTCTTAATAATTTAGTTGTCAGAAACAAAAGGATCA---------GAACATGT-GACAGTGGAGTCTCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44991845 67 + 71252344 CTTCTGAGGGTCTTAATAATTTAGTTGTCAGGAA-AAAAGGATCA---------GAACATGT-GAAAATGGAGTCTCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 355597 68 - 1393929 TTTCTGAGAGTCTTGATAATTTAGTTGTCAGGAACAAAAGGATCA---------GAACATGT-GAAAATGGAGTCTCC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1432063 68 - 15889662 TTCCTGAGGGTCTTAATAATTTAGTTGTCAGGAACAAAAGGATCA---------GAACATGT-GAAAATGGAGTCTCC i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84835742 68 + 108143057 TTTTTGAGAGTCTTAATAACTTAATTGTCAGGAACAAAACAGCCA---------GACCATGT-GAAACTGGGATCACT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 606001 69 - 10520994 TTTTTGAGAGTCTTAATAATTTAGTTGTCAGGAACAAAACAACCA---------GACCATGTGGAAACTGGGATCACT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1306383 77 - 29863360 TTTTTGAGATTCTTAATAATTTAGTTTTCAGGAACAAAACAGCTGTGTGAAAATGGCCATGT-GAAAATGGGGTCACT i otoGar3.GL873536 I 367 C 0 s mm10.chr13 76463155 62 + 120421639 TTTTCAAGAG------CAATTTAGTTGTCAGGAGCAAAACCACCA---------GTCTGTGT-GAAGATGGGGCCATG i mm10.chr13 C 0 C 0 s canFam3.chr3 14323065 64 + 91889043 TTTCTGAGAGTCTTCATAATTTTACTCTCAGTAACAGAACTACCT-------------ACCT-GGAAATAGGGTCACT i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 1241123 1782 - 11655695 I a score=1782701.000000 s hg38.chr5_GL383530v1_alt 52043 131 + 101241 GACAGCTAAAGCTATAGGCAGACCAAAGTGATGAGGGGCAAGGGAG----GCCAT-AATCCTGGAA----CAGAGGA-AGCTGTTTTGCA-TGGAG--AAAGGTGCAGGGAGGAGC--AAATGGGAAGGCATCACTCTAGAGACAT s panTro5.chr5 20284929 131 + 181907262 GACAGCTAAAGCTATAGGCAGACCAAAGTGATGAGGGTCAAGGGAG----GCCAT-AATCCTGGAA----CAGAGGA-AGCTGTTTTGCG-TGGAG--AAAGGTGCAGGGAGGAGC--AAATGGGAAGGCATCACTCTAGAGACAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297227 131 + 183735486 GACAGCTAAAGCTATAGGCAGACCAAAGTGATGAGGGTCAAGGGAG----GCCAT-AATCCTGGAA----CAGAGGA-AGCTGTTTTGCG-TGGAG--AAAGGTGCAGGGAGGAGC--AAATGGGAAGGCATCACTCTAGAGACAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4784020 131 - 13748885 GACAGCTAAAGCTATAGGCAGACCAAAGTGATGAGGGGCAAGGGAT----GCCAT-AATCCAGGAA----CAGAGGA-AGCTGTTTTGCA-TGGAG--AAAGGTGCAGGGAGGAGC--AAATGGGAAGGCATCACTCTAGAGACAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820266 135 - 163208435 GACAGCTAAAGCTATAGGCAGACCAAAGTAATGAGGGGCAAGGGAG----GCCAT-AATCCTGGAACAGTCAGAGAA-AGCTGTTTTGCT-TGGAG--AAAGGTGCAGGGAGGAGC--AAATGGGAAGGCATCACTCTAGAGACAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87843875 136 - 180051392 GACAGCTAAAGCTATAGTCAGAGCAAAGTGGTGAGGGGCAAGGGAG----GCCAT-AATCCTGGAACAGTCAGAGGA-AGCTGTATTGCG-TGGAG-AAAAGGTGCAGGGAGGAGC--AAATGGGAAGGCATCACTCTAGAGACAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948297 136 - 181584905 GACAGCTAAAGCTATAGTCAGAGCAAAGTGGTGAGGGGCAAGGGAG----GCCAT-AATCCTGGAACAGTCAGAGGA-AGCTGTATTGCG-TGGAG-AAAAGGTGCAGGGAGGAGC--AAATGGGAAGGCATCACTCTAGAGACAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1171092 136 - 8785636 GACACCTAAAGCTATAGTCAGAGCAAAGTGGTGAGGGGCAAGGGAG----GCCAT-AATCCTGGAACAGTCAGAGGA-AGCTGTATTGCA-TGGAG-AAAAGGTGCAGGGAGGAGC--AAATGGGAAGGCATCACTCTAGAGACAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639425 136 + 27333823 GACAGCTAAAGCTATAGTCAGAGCAAAGTGGTGAGGGGCAAGGGAG----GCCAT-AATCCTGGAACAGTCAGAGGA-AGCTGTATTGCG-TGGAG-AAAAGGTGCAGGGAGGAGC--AAATGGGAAGGCATCACTCTAGAGACAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909642 136 - 91010382 AACAGCTAAAGCTATAGTCAGACCAAAGTGGTGAGGGGCAAGGGAG----GCCAT-AATCCTAGAACAGTCAGAGGA-AGCTGTATTGCA-TGGAG-AAAAGGTGCAGGGAGGAGC--AAATGGGAAGGCATCGCTCTAGAGACAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028759 136 + 5179401 GACAGCTAAAGCTATAGTCAGAGCAAAGTGGTGAGGGGCAAGGGAG----ACCAT-AATCCTGGAACAGTCAGAGGA-AGCTGTATTGCG-TGGAG-AAAAGGTGCAGGGAGGAGC--AAATGGGAAGGCATCACTCTAGAGACAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726775 136 - 21726897 GACAGCTAAAGCTATAGGCGGACCAAAGTGGAGAGGGGCAAGGGAG----GCCAT-AATCCTGGAACAGTCAGAGGA-AGCTGTATTGCA-TGGAG-AAAAGGTGCAGGGAGGGGC--AAATGGGAAGGCATCACTCTGGAGACAC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543653 136 + 204313951 GACAGCTAAAGCTATAGGCAGACGGAAGTGGTAAGGGGCAAGGGAG----GCTAT-AATCCTGGAAGCATCAAAGGA-AGCTGTTTTGCA-TGGAG-AAAAGGTACAGGGAAAAGC--AAATGCGAAGGCATCACTCTAGAGACAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44991912 136 + 71252344 GACAGCTAAAGCTATAGGCAGACAGAAGTGGTAAGGGGCAGGGGAG----GCTAT-AATCCTGGAACCATCATAGGA-AGCGATTTTGCA-TGGAG-AAAAGGTGCAGGGAGAAGC--AAATGGGAAGGCATCACTCTAGAGACAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 355665 136 - 1393929 GACAGCTAAAGCTATAGGCAGATGGAAGTAGTAAGGGGCAGGGGAG----GCTAT-AATCCTGGAACCGTCAGAGGA-AGCTGTTTTGCA-TGGAG-AAAAGGTGCAGGGAGAAGC--AAATGGAAAGGCGTCACTCTAGGGACAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1432131 135 - 15889662 GACAGCTAAAGCTATAGGCAGACAGAAGTGGTAAGGGGCAGGGGAG----GCTAT-AATCCTGGAACCGTCAGAGGA-AGCTATTTTGCA-TGGAG--AAAGGTGCAGGGAGAAGC--AAATGGGAAGGCGTCACTCTAGAGACAT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84835810 134 + 108143057 GACAGCTAAAGCTATAAGCAGACCAAAGTGATGAGGGG--AGGGAG----GTCAT-AATCCAGGAACAACCAGGGGA-AGCTAGCTTGCG-TGAAG-AGAAAGTGCAGAGAGAAGC--AAATGGGAAGGCATCACCCCAAAGACAT i micMur3.chr12 C 0 I 217 s proCoq1.NW_012147189v1 606070 129 - 10520994 GACAGCTAAAGCTATAAGCAGACCAAAGTGATGAGGGG--AGGGAG----GTCAT-AATCCAGGAACAATCAGGGGA-AGCTA-----CA-TGGAG-AGAAAGTGCAGAGAAAAGC--AAATAGGAAGGCATCACCCCAAAGACAT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1306460 132 - 29863360 GATAGCTAAAGCTATAAGCAGACCAGAGTGA-GAGGGT--GGGAAG----GCCAT-GGCCCAGGAACAACCAGAAGA-AGCTGGTTTGCATTAGAG-ACAAAATGCAGGGAGGAGC--AAATGGGTGGCTAC--ACCCAAAGGCTT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76463217 115 + 120421639 GATAG---AGATTATAGGCAGATCAAAGTAATGAG---CAGGGGAGAATAGCCTC-AATCCAGGAATAGTCTCCAGACAGC-------CC-TGGAA--AGAAGTTTGGGGACAGTC--TAATGGG-AGGCACCAT----------- i mm10.chr13 C 0 C 0 s canFam3.chr3 14323129 112 + 91889043 GACCAGGAGATCCA-------------------AGAGAGAGAGGAG----GATATAAATCCAAG------CAGAGGA-AGCCATTGCTCA-TGGAGAAAAAAGTGCAAAGAGAAGC--AAATAGGAAGGT-TTATGCTGAAGACAT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1242905 105 - 11655695 GAGAGCTTAAGCTGCATGTAGACCA-------------------------GGAAT-AA------------GGGAGGA-CACTGTTTTATA-AGGAG-AAAAAGCCCAAAGAGAAACAGAAATTGGAAGGCATAACCCCAAAGATAC i dasNov3.JH570378 I 1782 C 0 a score=208876.000000 s hg38.chr5_GL383530v1_alt 52174 18 + 101241 CA----------AAGTTTCCTGTTCTCG s panTro5.chr5 20285060 18 + 181907262 CA----------AAGTTTCCTGTTCTCG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297358 18 + 183735486 CA----------AAGTTTCCTGTTCTCG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4784151 18 - 13748885 CA----------AAGTTTCCTGTTCTCG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820401 18 - 163208435 CA----------AAGTTTCCTGTTCTCG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844011 18 - 180051392 CA----------AAGTTTCCTGTTCTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948433 18 - 181584905 CA----------AAGTTTCCTGTTCTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1171228 18 - 8785636 CA----------AAGTTTCCTGTTCTCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639561 18 + 27333823 CA----------AAGTTTCCTATTCTCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909778 18 - 91010382 CA----------GAGTTTCCTGTTCTCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028895 18 + 5179401 CA----------AAGTTTCCTGTTCTCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726911 18 - 21726897 CA----------AAGTTTCCTGTTCTCG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543789 18 + 204313951 CA----------AGGTTTTCTGTTTTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992048 18 + 71252344 CA----------AGGTTTCCTGTTCTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 355801 18 - 1393929 CA----------AGGTTTTCTGTTCTCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1432266 18 - 15889662 CA----------AGGTTTCCTATTCTCA i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 606199 18 - 10520994 TA----------AACATTCCCATTCCCA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1306592 11 - 29863360 -----------------TCCCGATTCTA i otoGar3.GL873536 C 0 I 7 s mm10.chr13 76463332 14 + 120421639 --------------GTTTCTGGTTCCCA i mm10.chr13 C 0 C 0 s canFam3.chr3 14323241 18 + 91889043 CA----------AAGTTTCCAGTTCTTA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1243010 28 - 11655695 CAACTTTGTGATACATTTCTTGTTTTAG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84835944 217 + 108143057 I a score=1378965.000000 s hg38.chr5_GL383530v1_alt 52192 97 + 101241 GAGGTTTGGCTTGACTTCACCCTTCTTCCCATGAAAATCTGTAGTGTCCTTTCAGTA--AATTTTCT---TTCCTTAAACTAGTTTGTATGGATTTCTGTTT s panTro5.chr5 20285078 97 + 181907262 GAGGTTTGGCTTGACTTCACCCTTCTTCCCATGAAAATCTGTAGTGTCCTTTCAGTA--AATTTTCT---TTCCTTAAACTGGTTTGTATGGATTTCTGTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297376 97 + 183735486 GAGGTTTGGCTTGACTTCACCCTTCTTCCCATGAAAATCTGTAGTGTCCTTTCAGTA--AATTTTCT---TTCCTTAAACTGGTTTGTATGGATTTCTGTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4784169 97 - 13748885 GAGGTTTGGCTTGACTTCACCCTTCTTCCCATGAAAATCTGTAGTGTCCTTTCAGTA--AATTTTCT---TCCCTTAAACTGGTTTGTATGGATTTCTGTTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820419 97 - 163208435 GAGGTTTGGCTTGACTTCACCCTTCTTCCCATGGAAATCCGTAGTGTCCTTTCGGTA--AATTTTCT---TTCCTTAAACTGTTTTGTATGGATTTCTGTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844029 97 - 180051392 GAGGTTTTGCTTGACTTCATCCTTCTTCCCATGAAAATCCGCATTGTCCTTTCAGTA--AGTTTTCT---TTCCTTAAACTGGTTTGTATTGATTTCTGTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948451 97 - 181584905 GAGGTTTTGCTTGACTTCATCCTTCTTCCCATGAAAATCCGCATTGTCCTTTCAGTA--AGTTTTCT---TTCCTTAAACTGGTTTGTATTGATTTCTGTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1171246 97 - 8785636 GAGGTTTTGCTTGACTTCATCCTTCTTCCCATGAAAATCCGCATTGTCCTTTCAGTA--AGTTTTCT---TTCCTTAAACTGGTTTGTATTGATTTCTGTTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639579 97 + 27333823 GAGGTTTCGCTTGACTTCATCCTTCTTCCCATGAAAATCTGCATTGTCCTTTCAGTA--AGTTTTCT---TTCCTTAAACTGGTTTGTATGGATTTCTGTTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909796 97 - 91010382 GAGGTTTCGCTTGACTTCATCCTTCTTCCCATGAAAATCTGCATTGTCCTTTCAGTA--AGTTTTCT---TTCCTTAAACTGGTTTGTATGGATTTCTGTTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2028913 97 + 5179401 GAGGTTTCGCTTGACTTCATCCTTCTTCCCATGAAAATCTGCATTGTCCTTTCAGTA--AGTTTTCT---TTCCTTAAACTGGTTTGTATGGATTTCTGTTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7726929 97 - 21726897 GAGGTTTGGCTTGACATCATCCTTCTTCCCGTGAAAATCTGCATTGTCCTTTCAGCA--AATTTTCT---TTCCTTAAACTGGTTTGTATGGATTTCTGTTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543807 95 + 204313951 GAGGTTTGGCTTGACTTCACCCTTC--CTCACGAAAGTCTGCAGGGTCCTTTCAGTA--CATTTTCT---TTCCTTAAACTGGTTTGTATGGGTTTCTGTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992066 97 + 71252344 GAGGTTTGGCTTGACTTCATCCTTCTTCTTATGAAAATCTGCAGTGTCCTTTCAGTA--CATTTTCT---TTCCTTAAACTGATTTGTATGGGTTTCCGTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 355819 95 - 1393929 GAGGTTTGACTTGACTTCACCCTTC--CTCACGGAATTCTGCAGTGTCCTTTCAGTA--CATTTTCT---TTCCTTAAACTGGTTTGTATGGGTTTCTGTTT i cebCap1.NW_016107830v1 C 0 I 22 s aotNan1.NW_018506370v1 1432284 97 - 15889662 GAGGTTTGGCTTGACTTCACCCTTCTTCTTACAAAAATCTACAGTGTCCTTTCAGTA--CATTTTCT---TTTCTTAAACTGGTTTGTTTGGGTTTCTGTTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84836161 94 + 108143057 GAGGTTTGGCTTGACTTCACATTTCCTTCCATGAAAATCTGCAGTGTACTTTCAGTA--AATT---T---TTTAATAAATTGGTTTATATGGGTCTCTGTTT i micMur3.chr12 I 217 C 0 s proCoq1.NW_012147189v1 606217 94 - 10520994 AAGCTTTGACTTGACTTCATATTTCCTTCCATGAAAATCCTCAGTGTACTTTCAGTA--AATT---T---TTTAATAAATTGGTTTATATGGGTCTCTGTTT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1306610 94 - 29863360 GAGCTTTGGCTCCACTTCACATTTCCTTCCATGAAAACCTGCAGTGTTCTTTCAATC--AGTT---G---TTTCATAAACTGATTTGTGTGGGTTTTTGTTT i otoGar3.GL873536 I 7 C 0 s mm10.chr13 76463346 75 + 120421639 AAGGTTTCAGTGGACCTGACATTTCCTTCCA-GAAGACCTGCAATCTTTTCACAGGG--CTTCTCCT---TT-------------------GACTTCTTT-- i mm10.chr13 C 0 C 0 s canFam3.chr3 14323259 91 + 91889043 GAGGTTTGGCTTGACTTTACTTTTCCTGCAGTGAAAATCT--AGTGTCCCTTCATTA--AGTTTTCTTAGTTTCTTAGA-------GCATGGGTTTCTCTTT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1243038 98 - 11655695 -GCATTTGGCTTAACTTCAATTTTTTTCCTATGATAATTCATAGTGTCCTTTCTGTAATATTTTTCT---TCACTTAAACTAGTTTTTATGGGTTTCTTTTT i dasNov3.JH570378 C 0 C 0 a score=453406.000000 s hg38.chr5_GL383530v1_alt 52289 52 + 101241 CTTGCTATCAG----ACCTAA------------CAAAAA----GAGAAATGTATTTGAATA-----ATATACCTATA s panTro5.chr5 20285175 52 + 181907262 CTTGCTATCAG----ACCTAA------------CAAAAA----GAGAAATGTATTTGAATA-----ATATACCTATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297473 52 + 183735486 CTTGCTATCAG----ACCTAA------------CAAAAA----GAGAAATGTATTTGAATA-----ATATACCTATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4784266 52 - 13748885 CTTGCTATCAG----ACCTAA------------CAAAAA----GAGAAATGTATTTGAATA-----ATATACCTATA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820516 52 - 163208435 CGTGCTATCAG----ACCTAA------------CAAAAA----GAGAAATGTATTTGAATA-----ATATACCTATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844126 52 - 180051392 CTTGCTATCAG----ACCTAA------------CGAAAA----GAGAAATGTATTTGAATA-----ATATACCTATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948548 52 - 181584905 CTTGCTATCAG----ACCTAA------------CGAAAA----GAGAAATGTATTTGAATA-----ATATACCTATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1171343 52 - 8785636 CTTGCTATCAG----ACCTAA------------CGAAAA----GAGAAATGTATTTGAATA-----ATATACCTATA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639676 52 + 27333823 CTTGCTATCAG----ACCTAA------------CGAAAA----GAGAAATGTATTTGAATA-----ATATACCTATA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909893 52 - 91010382 CTTGCTATCAG----ACCTAA------------CAAAAA----GAGAAATGTATTTGAATA-----ATATACCTATA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029010 52 + 5179401 CTTGCTATCAG----ACCTAA------------CGAAAA----GAGAAATGTATTTGAATA-----ATATACCTATA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727026 52 - 21726897 CTTGCTATCAG----ACCTAA------------TGAAAA----GAGAAATGTATTTGAATA-----ATATACCTATA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543902 29 + 204313951 TTTAT-------------------------------------------ATGTATTTGAAGA-----ATATACCTGTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992163 29 + 71252344 TTTAC-------------------------------------------ATGTATTTGAAGA-----ATATACCTGTA i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1432381 29 - 15889662 TTTAC-------------------------------------------ATGTATTTGAAGA-----ATATACCTATA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84836255 56 + 108143057 TTTGCTATCAGTTATACCTAA------------CAAAAG----CAAAAATGCATTTGAATA-----ATATTCCTATA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 606311 56 - 10520994 CTTGCTATCAGTTATACCTAA------------CAGAAA----CAAAAATATATTTGAACA-----ATTTTCCTATA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1306704 63 - 29863360 CTTGCTATCAGTTATACCTAAACCCTCTCCCCCCA---------AAAAATACATTTGGATA-----ATATTCCTATA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76463421 65 + 120421639 GATTCTATCAGCAATCTCTAA------------CAAAAGAACTGGTTGGTGTATCTGCATGCATGTGGATGCCTATA i mm10.chr13 C 0 I 246 s canFam3.chr3 14323350 56 + 91889043 CTTGCTATTAGTTATACTCGC------------CACAGA----CAGAAATATATTTAAATG-----ATATTTCTCTA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1243136 53 - 11655695 CTTGGGATAAATTAAACCTAA------------TGAA------GACAAATACGTTTGAATA-----ATATATCCTT- i dasNov3.JH570378 C 0 C 0 e cebCap1.NW_016107830v1 355914 22 - 1393929 I a score=1087986.000000 s hg38.chr5_GL383530v1_alt 52341 91 + 101241 ATATCTCATTGGGAGGAATAAGA-TTACATTAAATGAGGGAGACACTATTGACATGTTGTATCTCTTTAAATGGCAATATAAAATCAGTGCA s panTro5.chr5 20285227 91 + 181907262 ATATCTCATTGGGAGGAATAAGA-TTACATTAAATGAGGGATACACTATTGACATGTTGTATCTCTTTAAATGGCAATATAAAATCAGTGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297525 91 + 183735486 ATATCTCATTGGGAGGAATAAGA-TTACATTAAATGAGGGATACACTATTGACATGTTGTATCTCTTTAAATGGCAATATAAAATCAGTGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4784318 91 - 13748885 ATATCTCATTGGGAGGAATAAGA-TTACATTAAATGAGGGATACACTATTGACATGTTGTATCTCTTTAAATGGCAACATAAAATCAGTGCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820568 91 - 163208435 ATTTCTCATTGGGAGGAATAAGA-TTACATTAGATGAGGGAGACACTATTGACTTGTTGTATCTCTTTAAATGGCAATATAAAATCAGTGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844178 90 - 180051392 AT-TCTTATTGGGAGGAATAAGA-TTACATTAAATGAGGGAGACACTATTGACATGTTATGGCTCTTTAAATGGCAATATAAAATCAGTGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948600 90 - 181584905 AT-TCTTATTGGGAGGAATAAGA-TTACATTAAATGAGGGAGACACTATTGACATGTTATGGCTCTTTAAATGGCAATATAAAATCAGTGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1171395 90 - 8785636 AT-TCTTATTGGGAGGAATAAGA-TTACATTAAATGAGAGAGACACTATTGACATGTTATGGCTCTTTAAATGGCAATATAAAATCAGTGCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639728 90 + 27333823 AT-TCTTATTGGGAGGAATAAGA-TTACATTAAATGAGGGAGACACTATTGACATGTTATGGCTCTTTAAATGGCAATATAAAATCAGTGCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1909945 90 - 91010382 AT-TCTTATTGGGAGGAATAAGA-TTACATTAAATGAGGGAGACACTATTGACATGTTATGGCTCTTTAAATGGCAATATAAAATCAGTGCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029062 90 + 5179401 AT-TCTTATTGGGAGGAATAAGA-TTACATTAAATGAGGGAGACACTATTGACATGTTATGGCTCTTTAGATGGCAATATAAAATCAGTGCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727078 90 - 21726897 AT-TCTTATCGGGAGAAATAAGA-TTACATTAAATGAGGGAGACACTATTGACATGTTATGGCTCTTTAAACGGCAATATAAAATCAGTGCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112543931 91 + 204313951 ATTTCTTATTTGGTGGAAAAAGA-TTATATTAAATGAAGGAGACACTACTGACATGTTATATCTCTTTAAATGACAATATAAAATCATTGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992192 83 + 71252344 ATTTATTATTTGGTGGA---------ATAATAAATGAAGGAGACACTATTGACATGTTATATCTCTTTAAATGACAATATAAAATCATTGCA i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1432410 91 - 15889662 ATTTCTTATTTGGTGGAATAAGA-TTACATTAAATGAAGGAGACACTATTGACATGTTATAGCTCTTTAAATGACAATATAAAATCATTGCA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84836311 88 + 108143057 ATTTCCTAT-GGGAGGAATGAGA-TTACATTAAATAAGGGAGGCACT-TTGATATGTTCTATCTCTTTCA-GGGTGATATAAAATCAGTGCA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 606367 89 - 10520994 ATTTCCCAT-GGGAGAAATGAGA-TTACATTAAATAAGGGAGGCATT-TTGATATGTTCTGTCTCTTTAACTGGCAATATAAAATCAGTGCA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1306767 89 - 29863360 ATTTCCTAT-GGGAAGAATGAGA-TTACCTTGTATAAGGGAGGCAAG-TTGATATTTTATATCTCTTTAAGTGGCAATATAAAATCAGTGCA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14323406 90 + 91889043 TTTGCCTATT-AGAGGGATGAGA-TTACATTAAAAAGGAGAGGTACTATTGATACATTATATCTTTTTAAGTGGCAGTTTAAAATCAGTGCA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1243189 85 - 11655695 --TTCTGCT--GGAGGAATGAGACCTACATTTAAAAAAGGAAGCGTTATTAA--TGTTACATCTTTTTAAATG-CAATATAAAAGCAAGGCA i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76463486 246 + 120421639 I e cebCap1.NW_016107830v1 355914 22 - 1393929 I a score=147385.000000 s hg38.chr5_GL383530v1_alt 52432 9 + 101241 ACCACATTC s panTro5.chr5 20285318 9 + 181907262 ACCACATTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297616 9 + 183735486 ACCACATTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4784409 9 - 13748885 ACCACATTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820659 9 - 163208435 ACCACATTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844268 9 - 180051392 ACCACATTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948690 9 - 181584905 ACCACATTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1171485 9 - 8785636 ACCACATTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639818 9 + 27333823 ACCACATTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910035 9 - 91010382 ACCACATTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029152 9 + 5179401 ACCACATTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727168 9 - 21726897 ACCACATCC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544022 9 + 204313951 GCCACATTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992275 9 + 71252344 ACCACATTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 355936 9 - 1393929 ACCACGTTC i cebCap1.NW_016107830v1 I 22 C 0 s aotNan1.NW_018506370v1 1432501 9 - 15889662 ACCACATTC i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84836399 9 + 108143057 ATCACATTC i micMur3.chr12 C 0 I 91 s proCoq1.NW_012147189v1 606456 9 - 10520994 ATCACATTC i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1306856 9 - 29863360 ATCATGTTC i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14323496 9 + 91889043 ACCAAATTC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1243274 9 - 11655695 AACATATTT i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76463486 246 + 120421639 I a score=310014.000000 s hg38.chr5_GL383530v1_alt 52441 25 + 101241 CAACTGTCTTATTCTTGAATTATTA--------- s panTro5.chr5 20285327 25 + 181907262 CAACTGTCTTATTCTTGCATTATTA--------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297625 25 + 183735486 CAACTGTCTTATTCTTGCATTATTA--------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4784418 25 - 13748885 CAACTGTCTTATTCTTGCATTATTA--------- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820668 25 - 163208435 CAACTGTCTTATTCTTGCATTATTA--------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844277 25 - 180051392 CAACTGTCTTATTCTTGCATTATTA--------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948699 25 - 181584905 CAACTGTCTTATTCTTGCATTATTA--------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1171494 25 - 8785636 CAACTGTCTTATTCTTGCATTATTA--------- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639827 25 + 27333823 CAACTGTCTTATTCTTGCATTATTA--------- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910044 25 - 91010382 CAACTGTCTTATTCTTGCATTATTA--------- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029161 25 + 5179401 CGACTGTCTTATTCTTGCATTATTA--------- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727177 25 - 21726897 CAACTGTCTTATTCTTGCATTATTA--------- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544031 25 + 204313951 CAACTGCGTTATTCTTGCATTATTT--------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992284 25 + 71252344 CAACTGTGTTATTCTTACATTAATT--------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 355945 25 - 1393929 CAACTGTGTTATTCTTGCATTATTT--------- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1432510 25 - 15889662 CAACTGTGTTATTCTTGCATTATTT--------- i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 606465 24 - 10520994 -AACTGCCTTATTCTTGCATCATTA--------- i proCoq1.NW_012147189v1 C 0 I 67 s otoGar3.GL873536 1306865 23 - 29863360 -CACTGTTTTATTCTTGCATCATA---------- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14323505 25 + 91889043 CTCCAATCTTATTCTTGCATGATAA--------- i canFam3.chr3 C 0 I 9 s dasNov3.JH570378 1243283 32 - 11655695 TAGCTGTCT--GTCTTGCATGATGAACATCATTA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84836408 91 + 108143057 I e mm10.chr13 76463486 246 + 120421639 I a score=472226.000000 s hg38.chr5_GL383530v1_alt 52466 43 + 101241 C---TCATGTTTCAAAATAGAACA-TTTGTAGGACTGA-TAGTAAAAT s panTro5.chr5 20285352 43 + 181907262 C---TCATGTTTCAAAATAGAACA-TTTGTAGGACTGA-TAGTAAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297650 43 + 183735486 C---TCATGTTTCAAAATAGAACA-TTTGTAGGACTGA-TAGTAAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4784443 43 - 13748885 C---TCATGTTTCAAAATAGAACA-TTTGTAGGACTGA-TAGTAAAAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820693 43 - 163208435 C---TCGTGTTTCAAAATAGAACA-GTTGTAGGACTGA-TAGTAAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844302 43 - 180051392 C---TCATGTTTCAAAATAGGAAA-TTTGTAGGACTTA-TAGTAAAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948724 43 - 181584905 C---TCATGTTTCAAAATAGGAAA-TTTGTAGGACTTA-TAGTAAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1171519 43 - 8785636 C---TCATGTTTCAAAATAGGAAA-TTTGTAGGACTTA-TAGTAAAAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639852 46 + 27333823 CAATTCATGTTTCAAAATAGGAAA-TTTGTAGGACTTA-TAGTAAAAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910069 43 - 91010382 C---TCATGTTTCAAAACGGAAAA-TTTGTAGGACTTA-TAGTAAAAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029186 43 + 5179401 C---TCATGTTTCAAAATAGGAAA-TTTGTAGGACTTA-TAGTAAAAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727202 43 - 21726897 C---TCATGTTTCAAAATAGAAAA-TTTGTAGGACTTA-CAGTAAAAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544056 44 + 204313951 C---TCATGTTTCGAAATAGAAAAATTTGTAGGACTGA-TAGTGAAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992309 44 + 71252344 T---TCATGTTTCAAAATAGAAAAGTTTGTAGGACTGA-TAGTAAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 355970 43 - 1393929 C---TCATGTTTCAAAATAGAAAA-TTTGTAGGACTGA-TAGTAAAAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1432535 44 - 15889662 C---TCATGTTTCAAAATAGAAAAATTTGTAGGACTGA-TAGTAAAAT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1306888 41 - 29863360 -----CATGTTTGAAAATGGAAAA-GTTTTAGGACTGA-TAGCTAAGT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14323539 35 + 91889043 ---TTCCTGTTTGAAA---------ATTGCAGGATTGG-TAGTGAAtt i canFam3.chr3 I 9 C 0 s dasNov3.JH570378 1243315 41 - 11655695 ---TTCATGTTTGAAAATAGA----ATTGTAGGATTGATTAATGAAGT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84836408 91 + 108143057 I e proCoq1.NW_012147189v1 606489 67 - 10520994 I e mm10.chr13 76463486 246 + 120421639 I a score=17980.000000 s hg38.chr5_GL383530v1_alt 52509 3 + 101241 ATT s panTro5.chr5 20285395 3 + 181907262 ATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297693 3 + 183735486 ATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4784486 3 - 13748885 ATT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820736 2 - 163208435 A-T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844345 3 - 180051392 ATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948767 3 - 181584905 ATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1171562 3 - 8785636 ATT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639898 3 + 27333823 ATT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910112 3 - 91010382 ATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029229 3 + 5179401 ATT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727245 3 - 21726897 ATT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544100 3 + 204313951 ATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992353 3 + 71252344 ATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 356013 3 - 1393929 ATT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1432579 3 - 15889662 ATT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1306929 1 - 29863360 C-- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76463732 3 + 120421639 ACT i mm10.chr13 I 246 C 0 s canFam3.chr3 14323574 2 + 91889043 -tt i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1243356 3 - 11655695 GTC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84836408 91 + 108143057 I e proCoq1.NW_012147189v1 606489 67 - 10520994 I a score=39480.000000 s hg38.chr5_GL383530v1_alt 52512 2 + 101241 TT s panTro5.chr5 20285398 2 + 181907262 TT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297696 2 + 183735486 TT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4784489 2 - 13748885 TT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820738 2 - 163208435 TT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844348 2 - 180051392 TT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948770 2 - 181584905 TT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1171565 2 - 8785636 TT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639901 2 + 27333823 TT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910115 2 - 91010382 TT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029232 2 + 5179401 TT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727248 2 - 21726897 TT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544103 2 + 204313951 TT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992356 2 + 71252344 TT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 356016 2 - 1393929 TT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1432582 2 - 15889662 TT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84836499 2 + 108143057 TT i micMur3.chr12 I 91 C 0 s proCoq1.NW_012147189v1 606556 2 - 10520994 TT i proCoq1.NW_012147189v1 I 67 C 0 s otoGar3.GL873536 1306930 2 - 29863360 TT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76463735 2 + 120421639 CT i mm10.chr13 C 0 C 0 s canFam3.chr3 14323577 2 + 91889043 tt i canFam3.chr3 I 1 I 214 s dasNov3.JH570378 1243359 2 - 11655695 TT i dasNov3.JH570378 C 0 C 0 a score=2135516.000000 s hg38.chr5_GL383530v1_alt 52514 148 + 101241 TTTAAAAATA-AAAGTCTGTATTATC----TCTGAAGTTAGTACAAATTATCTTAAACTGCTTTTAT-GTAC------------------TTGTTAGT-----------------CCCATTACTCATCACAATTTTTCCAATCATGGAACCTCTAATAACATAATTAGGATAGGAAGGATATAAGTGGA s panTro5.chr5 20285400 148 + 181907262 TTTAAAAATA-AAAGTCTGTATTATC----TCTGAAGTTAGTACAAATTATCTTAAACTGCTTTTAT-ATAC------------------TTGTTAGT-----------------CCCATTACTCATCATAATTTTTCCAATCATGAAACCTCTAATAACATAATTAGGATAGGAAGGATATAAGTGGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297698 148 + 183735486 TTTAAAAATA-AAAGTCTGTATTATC----TCTGAAGTTAGTACAAATTATCTTAAACTGCTTTTAT-ATAC------------------TTGTTAGT-----------------CCCATTACTCATCATAATTTTTCCAATCATGAAACCTCTAATAACATAATTAGGATAGGAAGGATATAAGTGGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4784491 148 - 13748885 TTTAAAAATA-AAAGTCTGTATTATC----TCTGAAGTTAGTACAAATTATCTTAAACTGCTTTTAT-ATAC------------------TTGTTAGT-----------------CCCATTACTCATCAAAATTTTTCCAATCATGAAACCTCTAATAACATAATTAGGATAGGAAGGATATAAGTGGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820740 148 - 163208435 TTTAAAAATA-AAAGTCTGTATTATC----TCTGAAGTTAGTAGAAATTATCTTAAACTGCTTTTAT-ATAC------------------TTGTTAGT-----------------CCCATTACTCATCACGATTTTTCCAATCATGAAACCTCTAATAACATAATTAGGATAGGAAGGATATAAGTGGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844350 148 - 180051392 TTTAAAAATA-AAAGTCTGTATTATC----TCTGAAGTTAGTACAAATTATCTTAAACTACTTTTAT-ATAC------------------TTGTTAGT-----------------CCCATTACTCATCACAATTTTTCCAATCATGAAACCTCTAATAACATAATTAGGATAGGAAGGATATAAGTGGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948772 148 - 181584905 TTTAAAAATA-AAAGTCTGTATTATC----TCTGAAGTTAGTACAAATTATCTTAAACTACTTTTAT-ATAC------------------TTGTTAGT-----------------CCCATTACTCATCACAATTTTTCCAATCATGAAACCTCTAATAACATAATTAGGATAGGAAGGATATAAGTGGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1171567 148 - 8785636 TTTAAAAATA-AAAGTCTGTATTATC----TCTGAAGTTAGTACAAATTATCTTAAACTACTTTTAT-ATAC------------------TTGTTAGT-----------------CCCATTACTCATCACAATTTTTCCAATCATGAAACCTCTAATAACATAATTAGGAAAGGAAGGATATAAGTGGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1639903 148 + 27333823 TTTAAAAATA-AAAGTCTGTATTATC----TCTGAAGTTAGTACAAATTATCTTAAACTACTTTTAT-ATAC------------------TTGTTAGT-----------------CCCATTACTCATCACAATTTTTCCAATCATGAAACCTCTAATAACATAATTAGGATAGGAAGGATATAAGTGGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910117 148 - 91010382 TTTAAAAATA-AAAGTCTGTATTATC----TCTGAAGTTAGTATAAATTATCTTAAACTACTTTTAT-ATAC------------------TTATTAGT-----------------CCCATTACTCATCACAATTTTTCCAATCATGAAACCTCTAATAACATAATTAGGATAGGAAGGATGTAAGTGGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029234 148 + 5179401 TTTAAAAATA-AAAGTCTGTATTATC----TCTGAAGTTAGTACAAATTATCTTAAACTACTTTTAT-ATAC------------------TTGTTAGT-----------------CCCATTACTCATCACAATTTTTCCAATCATGAAGCCTCTAATAACATAATTAGGATAGGAAGGATATAAGTGGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727250 149 - 21726897 TTAAAAAATA-AAAGTCTGTATTATC----TCTGAAGTTAGTACAAAGTATCTTAAACTACTTTTATAATAC------------------TTGCTAGT-----------------CCCATTACTCATCACAATTTTTCCAATCATGAAACCTCTAATAACATAATTAGGATAGGAAGGATATAAGTGGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544105 141 + 204313951 TT---TAATA-AAAGTCTGTGTTATC----TCTGCAGTTAGTACAGATTATCTTAAATTGCTTTTAT-ATAC------------------TTGTTAGT-----------------CCCATTACTGATCACAATTTCTC----CATGAAACCTTTAATAACATAATTAGGATAGGAAGGATATAAGTGGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992358 146 + 71252344 TT--AAAACA-AAAGGCTGTGTTATC----TCTGAAGTTAGTACAGATTATCTTAAATTGTTTTTAT-ATAC------------------TTGTTAGT-----------------CCCATTACTGATCACAATTTTTCCAAACATGAAAACTCCAATAATATAATTAGGAGAGGAAAGGTATAAGTGGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 356018 150 - 1393929 TT--AAAATA-AAACGCTGTGTTATTACAGCCTGAAGTTAGTACAGATTATCTTAAATTGCTTTTAT-ATAC------------------TTGTTAGT-----------------CTCTTTACTGATCACAATTTTTCCAAACATGAAACCTCTAATAACATAATTAGGATAGGAAGGATATAAGTGGA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1432584 147 - 15889662 TA-AAAAATA-AAAGTCTGTGTTATC----TCTGAAGTTAGTACAGATTATCTTAAATTGCTCTTAT-ATAC------------------TTGTTAGT-----------------CCCATTACTGATCACAATTTTTCCAAACATGAAACCTTTAATAACATAATTAGGATAGGAAGGATATAAGTGGA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84836501 143 + 108143057 TTTAAAAATG-AAAGTCTGTACTATC----TCTG-AGTTAGTGCAGGTTGTCTTAATCTACTATTAT-TTAT------------------TTATTAAT-----------------CCCATTAATGATCACAATCTACCCAATCATGGGAGCTCTAATAACA----CAGGGTAGGAAGGATGTAAGTGGA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 606558 143 - 10520994 TTTAAAAATG-GAAGTCTGTATTATC----TCTG-AGTTAGTGCAGATTGTCTTAATCTACTATTAT-TTAC------------------TTATTAGT-----------------CCCATTAATGATCACAATTTACCCAATCATGGGAGCTCTAATAACA----TAGGGTAGGAAGGATATAAGTGGA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1306932 145 - 29863360 TTTAAAAATGAAAAGTCTGTATTTAA----TCTGAAGGTAGTACAGATTATCCTAAGCTACCATGAT-TTAC------------------TTATTAGT-----------------TCCATTAATGATCACAGTTTACCCAATCATGAGAGCTCTAATAACA----TGGGATAGGAAGGATAGAGGTGGA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76463737 122 + 120421639 TTTAAAATTG-AAAATTTCCATAACC----TCTGATGTTATTGCAAG----CTTAGTCTGCTAAAAC---------------------------TAAG-----------------TCCATCAGTTCTACCAGCTTACCTACTCAAAATTGCTTTAGTAAAACA--------------GACATAAGTGCA i mm10.chr13 C 0 C 0 s canFam3.chr3 14323793 139 + 91889043 TTTTAAAAAA-GAAGTCTGTGTCATC----TCTGAAATTCACGCAGATTGTCTTAATGTACTATTAT-TTAC------------------ATATTAGT-----------------CCAATTAATTATCACAATTCATCCAATCTTGGAAGCTCTAATAACA---------TAGGGAGGATATAAGTGGA i canFam3.chr3 I 214 C 0 s dasNov3.JH570378 1243361 170 - 11655695 --TAAAAATT-AAAG-------TATC----TCTGATCTTAGTGCCAATTGTCTTAATCTACTGTTAT-CTATAGTTATTTACTTACTCTACTATTATTTAAACTACTGTATATTATCAATTAATGATAACAATTTGTTCATTCCTGGAAGCCCTAATAACA----GAGGATAGGGAGGATTTAAGTGGA i dasNov3.JH570378 C 0 C 0 a score=1104195.000000 s hg38.chr5_GL383530v1_alt 52662 78 + 101241 TTTTCTATATTTTTATCAGGAAAATCTGAATGTTCTATAGGGGTCCATCAGAAATGTGTTTGGTGAAAAGGCCCCAAA s panTro5.chr5 20285548 78 + 181907262 TTTTGTATATTTTTATCAGGAAAATCTGAATGTTCTATAGGGGTCCATCAGAAATGTGTTTGGTGAAAAGGCCCCAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297846 78 + 183735486 TTTTGTATATTTTTATCAGGAAAATCTGAATGTTCTATAGGGGTCCATCAGAAATGTGTTTGGTGAaaaggccccaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4784639 78 - 13748885 TTTTCTATATTTTTATCAGGAAAATCTGAATGTTCTATAGGGGTCCATCAGAAATGTGTTTGGTGAAAAGGCCCCAAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820888 78 - 163208435 TTTTCTATATTTTTATCAGGAAAATCTGAATGTTCTATAGGGGTCCATCAGAAATGTGTTTGGTGAAAAGGCCCCAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844498 78 - 180051392 TTTTCTATATTTTTATCAGGAAAATCTGAATGTTCTATAGGGGTCCATCAGAAATGTGTTTGGTGAAAAGGCCCCAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948920 78 - 181584905 TTTTCTATATTTTTATCAGGAAAATCTGAATGTTCTATAGGGGTCCATCAGAAATGTGTTTGGTGAAAAGGCCCCAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1171715 78 - 8785636 TTTTCTATATTTTTATCAGGAAAATCTGAATGTTCTATAGGGGTCCATCAGAAATGTGTTTGGTGAAAAGGCCCCAAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640051 78 + 27333823 TTTTCTATATTTTTATCAGGAAAATCTGAATGTTCTATAGGGGTCCATCAGAAATGTGTTTGGTGAAAAGGCCCCAAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910265 78 - 91010382 TTTTCTATATTTTTATCAGGAAAATCTGAATGTTCTATAGGGGTCCATCAGAAATGTGTTTGGTGAAAAGGCCCCAAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029382 78 + 5179401 TTTTCTATATTTTTATCAGGAAAATCTGAATGTTCTATAGGGGTCCATCAGAAATGTGTTTGGTGAAAAGGCCCCAAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727399 78 - 21726897 TTTTCTATATTTTTATGAGGAAAATCTGAATGTTCTATAGGGGTCCATCAGAAATGTGTTTGGTGAAAAGGCCCCAAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544246 78 + 204313951 TTTTTTATATTTTTATCAGGAAAATCTGAATGTTCTATAGGGGTTCATCAGTAATGTGTTTAGTGAAAAAGCCGCAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992504 78 + 71252344 TTTTCTATATTTTTATCAGGAAAATCTGGATGTTCTGTAGGGGTCCATCAGTAATGTGTTTAGTGAAAAGGCCACAAA i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1432731 78 - 15889662 TTTTCTATATTTTTATCAGGAAAATCTGAATGTTCTATAGGGGTCCATCAGTAATGTGTTTAGTGaaaaggccacaga i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84836644 77 + 108143057 TTTTCTATATTTTTATCACAAAAATCAGAAGGTTCTGTAGGCACCAATCAGAAGTGTGTTTAGt-aaaaggccacaaa i micMur3.chr12 C 0 I 190 s proCoq1.NW_012147189v1 606701 78 - 10520994 TTTTCTATATTTTTATCAGTAAAATCAGAAGGTTCTATAGGGGCCAATCAGAAGCATGTTTAGTAaaaaggccacaaa i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1307077 78 - 29863360 TTTTCTATATTTTTATCAGGAAAATCGGAAGATTCTAGAGGGGCCAATTAGTAGCATGTTTAGTAGAAAGGCCACAAA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76463859 65 + 120421639 -----------TTTCTTGGTAAATCAAGGGTCTTCTTTAGGGATTCTTCAGAAA--GGCCTAGTAAAAAGGCCATAAC i mm10.chr13 C 0 C 0 s canFam3.chr3 14323932 77 + 91889043 TTTTCCACATTTTTTGGGGGAAAGTTAGAATGTTCTATAGGGACCAATCAGAAGTACATTTAGT-AAAAGAACACAAA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1243531 65 - 11655695 TTTTGTCCATTTTTATTTAAGAAACCAGAAGATTCTCTAAGGG-------------TGTTCAATAAAAGGGTTACAAA i dasNov3.JH570378 C 0 C 0 e cebCap1.NW_016107830v1 356168 0 - 1393929 C a score=2441455.000000 s hg38.chr5_GL383530v1_alt 52740 207 + 101241 ACTCTGATTATGTGACAACTTCCTTGTTCTTATGAACCTTTCAGGTTTACCACAGATAGCATAATCACCTCCTTGATTTATTTGATGAAAATTACCTCATAAGCCCAACTCGACC-TTAGATAGTTCATCAGAGTGGATCCAGGGATGCTGCAAAGTAAACACTGATTATAAGAGAAGGTGTTGACACCGCAGCTCAGGGCAAGCACT s panTro5.chr5 20285626 207 + 181907262 ACTCTGATTATGTGACAActtccttgttcttatgaacctttcaggtttaccacagatatcataatcacctccttgatttatttgatgaaaattacctcataagcccaactcgacc-ttagatagttcatcagagtggatccagggatgctgcaaagtaagcactgattataagagaaggtgttgacaccgcagctcagggcaagcact i panTro5.chr5 C 0 C 0 s panPan2.chr5 20297924 207 + 183735486 actctgatgatgtgacaacttccttgttcttatgaacctttcaggtttaccacagatatcataatcacctccttgatttatttgatgaaaattacctcataagcccaactcgacc-ttagatagttcatcagagtggatccagggatgctgcaaagtaagcactgattataagagaaggtgttgacaccgcagctcagggaaagcact i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4784717 207 - 13748885 ACTCTGATTATGTGACAActtccttgttcttatgaacctttcaggtttaccacagatatcataatcacctccttgatttatttgatgaaaattacctcataagcccaactcgacc-ttagatagttcatcaaagtggatccagggatgctgcaaagtaagcactgattataagagaaggtgttgacaccgcagctcAGGGCAAGCACT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53820966 207 - 163208435 ACTCTGATTATGTGACAAATTCCTTGTTCTTATGAACCTTTCAGGTTTACCACAGATATGATAATCACCTCCTTGATTTATTTGATGAAAATTACCTCATAAGCCCAACTCAACC-TTAGATAGTTCATCAGAGTGGATCCAGGGATGCTTCAAAGTAAGCACTGATTATAGAAGAAGGTGTTGACACCACAGATCAGGGTAAGCACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844576 207 - 180051392 ACTCTGATTATGTGACAGcttccttgttcttatgagcctttcaggtttaccacagataccataatcacctccttgatttatttggtgaaaattacctcataagccaagctcgacc-ttagatagTTCATCAGAGTGGATCCAGGGATGCTGCAAAGTAAGCACTGATTACAAGAGAAGGTGTTGACACCACAGCTCAGGGTAAGCACT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87948998 207 - 181584905 ACTCTGATTATGTGACAGCTTCCTTGTTCTTATGAGCCTTTCAGGTTTACCACAGATACCATAATCACCTCCTTGATTTATTTGGTGAAAATTACCTCATAAGCCAAGCTCGACC-TTAGATAGTTCATCAGAGTGGATCCAGGGATGCTGCAAAGTAAGCACTGATTACAAGAGAAGGTGTTGACACCACAGCTCAGGGTAAGCACT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1171793 207 - 8785636 ACTCTGATTATGTGACAGcttccttgttcttatgagcctttcaggtttaccacagataccataatcacctccttgatttatttggtgaaaattacctcataagccaagctcgacc-ttagatagttcatcaaagtggatccagggatgctgcaaagtaagcactgaTTACAAGAGAAGGTGTTGACACCACAGCTCAGGGTAAGCACT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640129 207 + 27333823 ACTCTGATTATGTGACAGcttccttgttcttatgagcctttcaggtttaccacagataccataatcacctccttgatttatttggtgaaaattacctcataagccaagctcgacc-ttagatagTTCATCAGAGTGGATCCAGGGATGCTGCAAAGTAAGCACTGATTACAAGAGAAGGTGTTGACACCACAGCTCAGGGTAAGCACT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910343 207 - 91010382 ACTCTGATTATGTGACAGCTTCCTTGTTCTTATGAGCCTTTCAGGTTTACCACAGATACCATAATCACCTCCTTAATTTATTTGATGAAAATTACCTCATAAGCCAAACTCAACC-TTAGATAGTTCATCAGAGTGGATCCAGAGATGCTGCAAAGTAAGCACTGATTACAAGAGAAGGTGTTGACACCACAGTTCAGGGTAAGCACT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029460 207 + 5179401 ACTCTGATTATGTGACAGcttccttgttcttatgagcctttcaggtttaccacagataccataatcacctccttgatttatttggtgaaaattacctcataagccaagctcgacc-ttagatagTTCATCAGAGTGGATCCAGGGATGCTGCAAAGTAAGCACTGATTACAAGAGAAGGTGTTGACACCACAGCTCAGGGTAAGCACT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727477 207 - 21726897 ACTCTGATTATGTGACAGCTTCCTTGTTCTTATGAGCCTTTCAGGTTTACCACAGATACCATAATCACCTCCTTGATTTATTTGATGAAAATTACCTCATAAGCCAAACTCGACC-TTAGATAGTTCATCAGAGTGGATCCAGGGATGCTGCAAAGTAAGAACCGATTACAAGAGAAGGTGTTGACACCACAGCTCAGGGTAAGCACT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544324 205 + 204313951 ACTGTGACTATGTGTCAGCTTCCTTGTTCTTGTGAGCCTTTCGGGTTTACCACAGAT---ATAATCATCTCCTTGATTTATTTGATGAAAATTACCACATAAGCCAAACTCAGCCTTAAGAAAGTTCATCAGAGTGGATCCAGGGATGCTGCAAAGTCAGCACTGGTTACAAGAGAAGGGGTTGCAACCACAGCTCAGGGTAAGCACC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992582 204 + 71252344 ACTGTGATTATGTGACAACTTCCTTGTTCTTGTGAGCCTTTTGGGTTTCCCACAGAT---ATAATCACCTCCTTGATTTATTTGATGAAAATTACCTCATAAGCCAAACTCATCC-TGAGACAGTTAATCAGAGTGGATCCAGGGATGCTGCAAAGTAGGCACTGGTTACAAGAGGAGGGGTTGCCACCAGAGCTCAGGGTAAGTACC i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1432809 204 - 15889662 actgtgattatgtgacaacttccttgttcttgtgagccttttgggtttaccacagat---atagtcacctccttgatttatttgatgaaaattatctcataagccaaactcaacc-ttagacagttcatcagagtggatccagggatgctgcaaagtaaccactggttacaagagaaggggttgccaccacagctcagGGTAAGCACT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 606779 193 - 10520994 gccatggttacatggcaccttccctattcttgtgagacttttggtcttcccacagatatcataatcacctccttaatctttctgatg--------------agccaaacttgact-tttgatggttcatcagagtggatccaaggttgctgcagagcaagcagtGATCACAAGAGAAGGTGTTGCCTCCATAGCTCAGTTTAAGCAGC i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1307155 161 - 29863360 TCCACGGCTATGTGGC-CCGTCCCCATTCTTCTGAGAGTGTTGGTCTTCCCACAGACACTACATTCACCTCCTTAATCTTTTTAATG--------------AGCC--ACTGGACC-TTTGATGGTTCCTTAGAGTGGAACCA--GCTGCAGCAAAGCCAGCAGTAAATACTG-------------CTCCACAGC-------------- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76463924 187 + 120421639 ATCATAGTTATGGG---GACTAACTATGTGTATGTA--TTTTGGTTTTGTCACAAATAACATCA-CACTTTCCTCATCTGCTGGATG------------TGAGCTAAACATGGCC-CTAGATGGTTTGTTATAGTGGGCCCAGGGGTACTGCAAAGCAAGTATAGATCACAGGA-AAGCTGTTGCTACCACAGTTGA-TTCAAGAAAT i mm10.chr13 C 0 C 0 s canFam3.chr3 14324009 206 + 91889043 ACCATGGTTATGGGTTACCTTCTCTATTGTTCTGAGACTTTTGGTCTTACCGCAGTAATCACAATCACCTCCTTGGACTGTTGGATGAGAATTGTGTCATGCGCCAAACTTGACC-TTGAGTAGTTCATCAGCATGAATCCAGGGATGCTGCAAAGCAAGCACTAATTACAAGAGAAGGTGTTGCTCTCACTGCTCAGTTTAAGCAG- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1243596 203 - 11655695 ACCATGGTTATATGGCACCATTCCTGTTCTTGTGAAACTTT-GGTTTTGCCACAGTTAGTACAATCACTTCTTTGGTCTGTGTGCTGAGAATTACCCAATGTGCTAAACTTGACC-TTAGATGGTTCATCAGAATGGATTCAGGGATGCTGCA-ATTAAGTGCTGATCACAAGAG--GGGATCACTACCACTGCTCAAGTTAAGCAGC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84836721 190 + 108143057 I e cebCap1.NW_016107830v1 356168 0 - 1393929 C a score=1188673.000000 s hg38.chr5_GL383530v1_alt 52947 95 + 101241 TGCCTGAGATGAAGAATAAAGGTAGAGAGACCTCAATCAGTGTCAAAAGAAATGCCATCATTAGGGTCATATAATTTTGTTTTGTTTGGTTTTGT s panTro5.chr5 20285833 95 + 181907262 tgcctgagatgaagaatgaaggtagagagacctcaatcagTGTCAAAAGAAATGCCATCATTAGGGTCATATAATTTTGTTTTATTTGGTTTTGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298131 95 + 183735486 tgcctgagatgaagaatgaaggtagagagacctcaatcagTGTCAAAAGAAATGCCATCATTAGGGTCATATAATTTTGTTTTATTTGGTTTTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4784924 95 - 13748885 TGCCTGAGATGAAGAATGAAGGTAGAGAGACCTCGATCAGTGTCAAAAGAAATGCCATCATTAGGGTCATATAATTTTGTTTTGTTTGGTTTTGT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53821173 95 - 163208435 TGCCTGAGATGACGAATGAAGGTGGAGAGACCTCAATCAGTGTCAAAAGAAATGCCATCATTAGGGTCATATAATTTTGTTTTGTTTGGTTTTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844783 92 - 180051392 TGCCTGAGATGAAGAATGAAG---GAGAGACCTCAATCAATGTGAAAAGAAATGTCATCATTACGGTCATATAATTTTGTTTTGTTTGGTTTTGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949205 92 - 181584905 TGCCTGAGATGAAGAATGAAG---GAGAGACCTCAATCAATGTGAAAAGAAATGTCATCATTACGGTCATATAATTTTGTTTTGTTTGGTTTTGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172000 92 - 8785636 TGCCTGAGATGAAGAATGAAG---GAGAGACCTCAATCAATGTGAAAAGAAATGTCATCATTACGGTCATATAATTTTGTTTCGTTTGGTTTTGT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640336 92 + 27333823 TGCCTGAGATGAAGAATGAAG---GAGAGACCTCAATCAATGTGAAAAGAAATGTCATCATTATGGTCATATAATTTTGTTTTGTTTGGTTTTGT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910550 92 - 91010382 TGCCTGAGATGAAGAATGAAG---GAGAGACCTCAATCAATGTGAAAAGAAATGCCATCATTAGAGTCATATAATTTTGTTTTGTTTGGTTTTGT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029667 92 + 5179401 TGCCTGAGATGAAGAATGAAG---GAGAGACCTCAATCAATGTGAAAAGAAATGTCATCATTACGGTCATATAATTTTGTTTTGTTTGGTTTTGT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727684 92 - 21726897 TGCCTGAGATGAAGAAGGAAG---GAGAGACCTCAATCAATGTGAAAAGAAATGCCATCATTAGGGTCATATAATTTTGTTTTGTTTGGTTTTGT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544529 95 + 204313951 TGCCTGAGATGAAGAATGAAGGTAGAGAGGCCTCAATAAATGTCAAAAGAAATGCCATCATTAGAGTCATACAATTTTGTTTTGTTTGGTTTTGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992786 95 + 71252344 TGCCTGAGATGAAGAGTGAAGGCAGAGAAGCCTCAATAAATGTCAAAAGAAATGCCATCATTAGGGTCATAGAATTTTGTTGTGTTTGGTTCTGT i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1433013 95 - 15889662 TGCCTGAGATGAAGAATGAAGGCGGAGAGGCCTCAATAAATGTCAAAAGAAATGCCATGATTAGGGTCATATAATTTTGTTTGGTTTGGTTTTGT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84836911 95 + 108143057 TGCCTGAGATGAAGAATGAAGGTGAGGAGACTTCAGTGAGTGTCAAAAGAAACACCATTATCAGGGTCATATAATTTTGCTTGGTTTGGTTTTGT i micMur3.chr12 I 190 I 85 s proCoq1.NW_012147189v1 606972 95 - 10520994 TGCCTGAGATGAAGAATGAAGGTGAGGAGACCTCAACGAGTGTCAAAAGAAACACCATTATCAGGGTCATATAATTTTGCTTGGTTTGGTTTTGT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1307316 89 - 29863360 --CATGGGGCTGAGAAAGGAGGTG-GGAGAC-TCAGCGGGTGTC-AGAGAAATGCCATTATCAGTGCCACGCAATTTTGACT-GCTTGATTTTGT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76464111 88 + 120421639 --CCTAAGATAAACAGTGGAAGAGAAGGGACTCTGGCAAATGTCAAAGGAAATCCCATCACCAACACCTTATAATTTTGTTTTATCTCAT----- i mm10.chr13 C 0 C 0 s canFam3.chr3 14324215 72 + 91889043 ---CTGAGAGGAAGAATGAAG--------------------GTCAAAAGAACTGCCATGATCAGGGTCATACAACTTGGTTTGATGTGATGTAGC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1243799 79 - 11655695 TGCCTGAGATGAGGAATTGAGGAGGGGAAACCTTAGCAAGTGTCCATCAAAATGTTACTATGAGGGCCATATGATTTGT---------------- i dasNov3.JH570378 C 0 C 0 e cebCap1.NW_016107830v1 356168 0 - 1393929 C a score=45864.000000 s hg38.chr5_GL383530v1_alt 53042 5 + 101241 ATCAT s panTro5.chr5 20285928 5 + 181907262 ATCAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298226 5 + 183735486 ATCAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785019 5 - 13748885 ATCAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53821268 5 - 163208435 GTCAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844875 5 - 180051392 ATCAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949297 5 - 181584905 ATCAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172092 5 - 8785636 ATCAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640428 5 + 27333823 ATCAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910642 5 - 91010382 ATCAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029759 5 + 5179401 ATCAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727776 5 - 21726897 ATCAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544624 5 + 204313951 ATCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992881 5 + 71252344 ATCAT i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1433108 5 - 15889662 ATCAT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 607067 5 - 10520994 CTTAT i proCoq1.NW_012147189v1 C 0 I 16 s otoGar3.GL873536 1307405 5 - 29863360 CTTAT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14324287 5 + 91889043 TTTGC i canFam3.chr3 C 0 I 3 s dasNov3.JH570378 1243878 5 - 11655695 ATTGG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84837006 85 + 108143057 I e mm10.chr13 76464199 0 + 120421639 C e cebCap1.NW_016107830v1 356168 0 - 1393929 C a score=270872.000000 s hg38.chr5_GL383530v1_alt 53047 21 + 101241 TAAAAAGTCCTCTCTATAATA s panTro5.chr5 20285933 21 + 181907262 TAAAAAGTCCTCTCTACAATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298231 21 + 183735486 TAAAAAGTCCTCTCTACAATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785024 21 - 13748885 TAAAAAGTCCTCTCTACAATA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53821273 21 - 163208435 TAAAAAGTCCTCTCTACAATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844880 21 - 180051392 TAAAAAGTCCTCTCTACGATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949302 21 - 181584905 TAAAAAGTCCTCTCTACGATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172097 21 - 8785636 TAAAAAGTCCTCTCTACGATA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640433 21 + 27333823 TAAAAAGTCCTCTCTACGATA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910647 21 - 91010382 TAAAAAGTCCTCTCTACGATA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029764 21 + 5179401 TAAAAAGTCCTCTCTACGATA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727781 21 - 21726897 TAAAAAGTCCTCTCTACAATA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544629 21 + 204313951 TAAAAAGTCCTCTCTACAATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992886 21 + 71252344 TAAAAAGTCCTCTCTACAATG i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1433113 21 - 15889662 TAAAAAGTCCTCTCTACAATA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1307410 19 - 29863360 --GAAAGTCCTCTCTGTAATA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76464199 19 + 120421639 --GAAACTTCTCTCTGCAATA i mm10.chr13 C 0 C 0 s canFam3.chr3 14324295 21 + 91889043 AGGGAGGTCCTCTCTGTAATA i canFam3.chr3 I 3 C 0 s dasNov3.JH570378 1243883 20 - 11655695 -TGAAAATCCTCTCTATAATA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84837006 85 + 108143057 I e proCoq1.NW_012147189v1 607072 16 - 10520994 I e cebCap1.NW_016107830v1 356168 0 - 1393929 C a score=465995.000000 s hg38.chr5_GL383530v1_alt 53068 43 + 101241 GGAATAAGGATATTTAGAAGGAAAAGACTTGTATGGAACTCT-G s panTro5.chr5 20285954 43 + 181907262 GGAATAAGGATATTTAGAAGGAAAAGACTTGTATGGAACTCT-G i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298252 43 + 183735486 GGAATAAGGATATTTAGAAGGAAAAGACTTGTATGGAACTCT-G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785045 43 - 13748885 GGAATAAGGATATTTAGAAGGAAAAGACTTGTATGGAACTCT-G i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53821294 43 - 163208435 GGAATAAGGATATTTAGAAGGAAAAGACTTGTATGGAACTCT-G i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844901 43 - 180051392 GCAATAAGGATATTTAGAAGGAAAGGACTTGTGTGGAACTCT-G i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949323 43 - 181584905 GCAATAAGGATATTTAGAAGGAAAGGACTTGTGTGGAACTCT-G i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172118 43 - 8785636 GCAATAAGGATATTTAGAAGGAAAGGACTTGTGTGGAACTCT-G i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640454 43 + 27333823 GCAATAAGGATATTTAGAAGGAAAGGATTTGTGTGGAACTCT-G i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910668 43 - 91010382 GCAATAAGGATATTTAGAAGGAAAGGACTTGTGTGGAACTCT-G i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029785 43 + 5179401 GCAATAAGGATATTTAGAAGGAAAGGACTTGTGTGGAACTCT-G i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727802 43 - 21726897 GCAATAAGGATATTTAGAAGGAAAGGACTTGTATGGAATTCT-G i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544650 42 + 204313951 GGAATAAGGGTATTTCGAAGGAAAAGACTTGTTTCAAACTGT-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992907 43 + 71252344 GGAATAAGGATATTTACAAGGAAAAGACTAGTTTTGAACTCT-G i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1433134 43 - 15889662 GGAATAAGGATATTTAGAAGGAAAAGACTTGTTTTACACTCT-G i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 607088 44 - 10520994 GGAATAAGCATGTTTAGGAGGAAAGGACTTGTTTTGAATTCTGG i proCoq1.NW_012147189v1 I 16 C 0 s otoGar3.GL873536 1307429 44 - 29863360 GGAATAAAGATGATCAGAAGGAAAGGACTTGCTTTGACTTCTAG i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76464218 38 + 120421639 GAAGTATAGATCTTTTCTA-GAAAGGGCTTGTTTAAA----T-C i mm10.chr13 C 0 C 0 s canFam3.chr3 14324316 43 + 91889043 GCAGTACAAACATTTGGATGAAAAGAGGCTTTTTCAATTCTT-A i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1243903 43 - 11655695 GGAATAAAGATGTTTAGAGTACAAGGCCTTGTTCTAAATCCT-G i dasNov3.JH570378 C 0 I 12429 e micMur3.chr12 84837006 85 + 108143057 I e cebCap1.NW_016107830v1 356168 0 - 1393929 C a score=199334.000000 s hg38.chr5_GL383530v1_alt 53111 20 + 101241 -TGAGTTGACAGTGTTTTCCT s panTro5.chr5 20285997 20 + 181907262 -TGAGTTGACAGTGTTTTCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298295 20 + 183735486 -TGAGTTGACAGTGTTTTCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785088 20 - 13748885 -TGAGTTGACAGTGTTTTCCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53821337 20 - 163208435 -TGAGTTGACAGTGTCTTCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844944 20 - 180051392 -TGAGTTGACAGTGTCTTCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949366 20 - 181584905 -TGAGTTGACAGTGTCTTCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172161 20 - 8785636 -TGAGTTGACAGTGTCGTCCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640497 20 + 27333823 -TGAGTTGACAGTGTCTTCCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910711 20 - 91010382 -TGAGTTGACAGTGTCTTCCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029828 20 + 5179401 -TGAGTTGACAGTGTCTTCCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727845 20 - 21726897 -TGAGTTGACAGTGTCTTCCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544692 20 + 204313951 -TGAGTTGAGGGTGTCTTGCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992950 20 + 71252344 -TGAGTTGAGGGTGTCTTGCT i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1433177 20 - 15889662 -TGAGTTGAGAGTGTCTTGTT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 607132 20 - 10520994 -CAAATTAAGGATATCCTCCA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1307473 20 - 29863360 -TGAGTTGAAGATTTCCTCTA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76464256 20 + 120421639 -TGAGCTATGGATGACATCTC i mm10.chr13 C 0 I 2 s canFam3.chr3 14324359 20 + 91889043 -TTAATTTGTGGAGTCCTCCA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 10400672 19 + 11655695 CTAATTTA--GATATCTTCCA i dasNov3.JH570378 n 12429 C 0 e micMur3.chr12 84837006 85 + 108143057 I e cebCap1.NW_016107830v1 356168 0 - 1393929 C a score=1441264.000000 s hg38.chr5_GL383530v1_alt 53131 114 + 101241 TCAGTGGGTTTGAATATTCCCTGTGCTGATCCA-----CACCTCT---------GTCTGAATCAGTGACCCTTGGCAAGGTGAGGTGGATAAGG---TATAGGGTGAGTGG-TACAAACCTCCAGTATCTTA s panTro5.chr5 20286017 114 + 181907262 TCAGTGGGTTTGAATATTCCCTGTGCTGATCCA-----CACCTCT---------GTCTGAATCAGTGACCCTTGGAAAGGTGAGGTGGATAAGG---TATAGGGTGAGTGG-TACAAACCTCCAGTATCTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298315 114 + 183735486 TCAGTGGGTTTGAATATTCCCTGTGCTGATCCA-----CACCTCT---------GTCTGAATCAGTGACCCTTGGAAAGGTGAGGTGGATAAGG---TATAGGGTGAGTGG-TACAAACCTCCAGTATCTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785108 114 - 13748885 TCAGTGGGTTTGAATATTCCCTGTGCTGATCCA-----CACCTCT---------GTCTGAATCAGTGACCCTTGGCAAGGTGAGATGGATAAGG---TATAGGGTGAGTGG-TACAAACCTCCAGTATCTTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53821357 114 - 163208435 TCAGTGGGTTTGAATATTCCCTGTGCTGACTCA-----CACCTCT---------GTCTGAATCAGTGACCTTTGGAAAGGTGAGGTGGATAAGG---TATAGGGTGAGTGG-TACAAACCTCCAGTATCTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87844964 114 - 180051392 TCCATGGGTTTGGGCATTACCTGTGCTGACCCA-----CACCTCT---------GTCTGAATCAGTGATCCTTGGAAAGGTGAGGTGGATAAGG---TATAGGGTGACTGG-TACAAACCTCCAGTATCTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949386 114 - 181584905 TCCATGGGTTTGAGCATTCCCTGTGCTGACCCA-----CACCTCT---------GTCTGAATCAGTGATCCTTGGAAAGGTGAGGTGGATAAGG---TATAGGGTGACTGG-TACAAACCTCCAGTATCTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172181 114 - 8785636 TCCATGTGTTTGAGCATTCCCTGTGCTGACCCA-----CACCTCT---------GTCTGAATCAGTGATCCTTGGAAAGGTGAGGTGGATAAGG---TATAGGGTGACTGG-TACAAACCTCCAGTATCTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640517 114 + 27333823 TCCATGGGTTTGAGCATTCCCTGTGCTGACCCA-----CACCTCT---------GTCTGAATCAGCGATCCTTGGAAAGGTGAGGTGGATAAGG---TATAGGGTGAGTGG-TACAAACCTCCAGTATCTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910731 114 - 91010382 TCCATGGGTTTGAGTATTCCCTGTGCTGACCCA-----CACCTCT---------GTCTGAATCAGCGATCCTTGGAAAGGTGAGGTGGATAAGG---TATAGAGTGAGTGG-TACAAACCTCCAGTATCTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029848 114 + 5179401 TCCATGGGTTTGAGCATTCCCTGTGCTGACCCA-----CACCTCT---------GTCTGAATCAGCGATCCTTGGAAAGGTGAGGTGGATAAGG---TATAGGGTGAGTGG-TACAAACCTCCAGTATCTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727865 112 - 21726897 TCCATGGATTTGAGTATTCCCTGTGCTGACCCA-----CACCTC-----------TCTGAATCAGCGATCCTTGGAAAGGTGAGGTGGATAAGG---TATAGGGTGAGTGG-TACAAACCTCCAGTATCTTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544712 114 + 204313951 TTAGTGGGTTTGAATATTCCCTGTGCTGTCCCA-----GACCTCT---------GTCTGAATCAGCGACCCTTGGAAAAGTGAGGTGGATAAAG---TGTAGGGTAAGTGG-TACAAACCTCCAGTATCTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44992970 110 + 71252344 TCAGTGGGTTTGAATATTCCCTGTGCTGACCCA-----GACC-------------TCTGAATCAGTGACCCTTGGAAAGGTGAGGTAGATAAAG---TGTAGGGTAAGTGG-TACAAACCTCCAATATCTTA i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1433197 114 - 15889662 TCAGTGGGTTTGAGTATTCCCTGTGCTGACCCA-----GACCTCT---------GTCTGAATCAGCGACCCTTGGAAAGGTGAGGTGGATAAAG---TGTAGGGTAAGTGG-TACAAACCTCCAGTATCTTA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84837091 115 + 108143057 TCAGTGGGTTTGAATGTTCTCTGTGCTGGCCCA-----TGCCTAC---------GTCTCAGTCAGAGACTCCTAGAAAGGGGAGGCAGATAAGG---TGTTAGATGAGTGGATGCAAACCTCCAGTGTTTTA i micMur3.chr12 I 85 C 0 s proCoq1.NW_012147189v1 607152 115 - 10520994 TCGATGAGTTTGAATATTCTCTGTGCTGGCCCA-----TGCCTGT---------GTCTCAGTCAGAGACCCCTGGAAAGGGGAGGCAGATAAGG---TGTTGGGTGAGTGGATGCAAACCTCCAGTGTTATA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1307493 115 - 29863360 CCAGTGGGTTGGAATATTTTCTATGCTGGCCCA-----TACCTGA---------GTGATGGTCAGAGACCCTTGCAAAGGGGAGGTAGACAAGA---TGTCTGATGAGTTAATGCAGCTCTCCAGGGCTCTA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76464278 104 + 120421639 TCAGTTG--------------TCTGCTAACCTA-----CATCTGT---------GTTTGAGTCACAGTCCCTTGGAAAGGTGAGGTAGATGAGGTTCTGTAGTGTGATTATATGGAAACCCCCAGGAATCTA i mm10.chr13 I 2 I 210 s canFam3.chr3 14324379 128 + 91889043 CTGGACGATTTGAATATTGTCTGTGATAACCTATAGGTTACCTATAGGTTATAGGTCTGAGTCATAGCTCCTTGGAAGGGTGAGGTTT-TAAGA---AGGAGGGTGAGTGGATGCAAGCCTCCAGTTTTCTG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 10400691 114 + 11655695 TCCATAGGTTTGAATATTCTCTGTGCTAATCCA-----TACCTTGA--------GCCTAAGGTAGAGAACCGTGAAAAACTAAGGTACAGAATG---TGCAAGGAAATGAA-TGCAAATCTCTTGTTTTCA- i dasNov3.JH570378 C 0 C 0 e cebCap1.NW_016107830v1 356168 0 - 1393929 C a score=92956.000000 s hg38.chr5_GL383530v1_alt 53245 6 + 101241 CCCCTT s panTro5.chr5 20286131 6 + 181907262 CCCCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298429 6 + 183735486 CCCCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785222 6 - 13748885 CCCCTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53821471 6 - 163208435 CCCCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87845078 6 - 180051392 CCCCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949500 6 - 181584905 CCCCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172295 6 - 8785636 CCCCTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640631 6 + 27333823 CCCCTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910845 6 - 91010382 CCCCTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029962 6 + 5179401 CCCCTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727977 6 - 21726897 CCCTTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112544826 6 + 204313951 CCCCTT i calJac3.chr2 C 0 I 297 s saiBol1.JH378106 44993080 6 + 71252344 TCCCTT i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1433311 6 - 15889662 CCCCTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84837206 6 + 108143057 CCCCTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 607267 6 - 10520994 CCCCTT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1307608 6 - 29863360 CCCCTT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14324507 6 + 91889043 CCCCTG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 10400805 6 + 11655695 CTCACT i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76464382 210 + 120421639 I e cebCap1.NW_016107830v1 356168 0 - 1393929 C a score=87294.000000 s hg38.chr5_GL383530v1_alt 53251 8 + 101241 AAAATATT s panTro5.chr5 20286137 8 + 181907262 AAAATATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298435 8 + 183735486 AAAATATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785228 8 - 13748885 AAAATATT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53821477 8 - 163208435 AAAATATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87845084 8 - 180051392 AAAATATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949506 8 - 181584905 AAAATATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172301 8 - 8785636 AAAATATT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640637 8 + 27333823 AAAATATT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910851 8 - 91010382 AAAATATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029968 8 + 5179401 AAAATATT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727983 8 - 21726897 AAAATATT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112545129 6 + 204313951 aaaaaa-- i calJac3.chr2 I 297 C 0 s saiBol1.JH378106 44993086 8 + 71252344 AGAAAATT i saiBol1.JH378106 C 0 I 296 s aotNan1.NW_018506370v1 1433317 8 - 15889662 AAAAAATT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84837212 8 + 108143057 AACGCATT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 607273 8 - 10520994 AACACATT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1307614 8 - 29863360 AATATGTT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14324513 8 + 91889043 AACACATT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 10400811 8 + 11655695 AACATATT i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76464382 210 + 120421639 I e cebCap1.NW_016107830v1 356168 0 - 1393929 C a score=86304.000000 s hg38.chr5_GL383530v1_alt 53259 6 + 101241 AGTGGA s panTro5.chr5 20286145 6 + 181907262 AGTGGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298443 6 + 183735486 AGTGGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785236 6 - 13748885 AGTGGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53821485 6 - 163208435 AGTGGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87845092 6 - 180051392 AGTGGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949514 6 - 181584905 AGTGGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172309 6 - 8785636 AGTGGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640645 6 + 27333823 AGTGGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910859 6 - 91010382 AGTGGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029976 6 + 5179401 AGTGGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727991 6 - 21726897 AGTGGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112545135 6 + 204313951 aGTGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44993390 6 + 71252344 aGTGGA i saiBol1.JH378106 I 296 C 0 s aotNan1.NW_018506370v1 1433325 6 - 15889662 AGTGGA i aotNan1.NW_018506370v1 C 0 I 288 s micMur3.chr12 84837220 6 + 108143057 ACTGGA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 607281 6 - 10520994 ACTGGG i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1307622 6 - 29863360 ACTGAG i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14324521 6 + 91889043 AGTGGA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 10400819 6 + 11655695 AGTGAA i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76464382 210 + 120421639 I e cebCap1.NW_016107830v1 356168 0 - 1393929 C a score=121812.000000 s hg38.chr5_GL383530v1_alt 53265 8 + 101241 GCTTTATT s panTro5.chr5 20286151 8 + 181907262 GCTTTATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298449 8 + 183735486 ACTTTATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785242 8 - 13748885 GCTTTATT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53821491 8 - 163208435 GCTTTATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87845098 8 - 180051392 GCTTTATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949520 8 - 181584905 GCTTTATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172315 8 - 8785636 GCTTTATT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640651 8 + 27333823 GCTTTATT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910865 8 - 91010382 GCTTTATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029982 8 + 5179401 GCTTTATT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7727997 8 - 21726897 GCTTTATT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112545141 8 + 204313951 GCTTTATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44993396 8 + 71252344 GCTTTATT i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1433619 8 - 15889662 GCTTTGTT i aotNan1.NW_018506370v1 I 288 C 0 s micMur3.chr12 84837226 8 + 108143057 GCTTTATT i micMur3.chr12 C 0 I 43 s proCoq1.NW_012147189v1 607287 8 - 10520994 GCTTTATT i proCoq1.NW_012147189v1 C 0 I 1 s otoGar3.GL873536 1307628 8 - 29863360 GTTTTATT i otoGar3.GL873536 C 0 I 1 s canFam3.chr3 14324527 7 + 91889043 -GATTATT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 10400825 8 + 11655695 GTTTTATT i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76464382 210 + 120421639 I e cebCap1.NW_016107830v1 356168 0 - 1393929 C a score=240951.000000 s hg38.chr5_GL383530v1_alt 53273 21 + 101241 CTGGGGAGA-----------------AGAGGGATCGAG s panTro5.chr5 20286159 21 + 181907262 CTGGGGAGA-----------------AGAGAGATCGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298457 21 + 183735486 CTGGGGAGA-----------------AGAGAGATCGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785250 21 - 13748885 CTGGGGAGA-----------------AGAGGGATCGAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53821499 21 - 163208435 TTGGGGAGA-----------------AGAGGGATTGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87845106 21 - 180051392 TTGGGGAGA-----------------AGAGGGATTGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949528 21 - 181584905 TTGGGGAGA-----------------AGAGGGATTGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172323 21 - 8785636 TTGGGGAGA-----------------AGAGGGATTGAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640659 21 + 27333823 TTGGGGAGA-----------------AGAGGGATTGAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910873 21 - 91010382 TTGGGGAGA-----------------AGAGGGATTGAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2029990 21 + 5179401 TTGGGGAGA-----------------AGAGGGATTGAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7728005 21 - 21726897 TTGGGGAGA-----------------AGAGGGATTGAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112545149 21 + 204313951 TTGGGAAGA-----------------AGAGGGATTGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44993404 21 + 71252344 TTTGGGAGA-----------------AGAGGGATTGAG i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1433627 21 - 15889662 TTGGGGAGA-----------------AGAGGGATTGAG i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 607296 21 - 10520994 TCTGGGATA-----------------AAATAGATTGAG i proCoq1.NW_012147189v1 I 1 C 0 s otoGar3.GL873536 1307637 21 - 29863360 TCCTGGAGA-----------------AAAGAGATTGAG i otoGar3.GL873536 I 1 C 0 s canFam3.chr3 14324534 38 + 91889043 TTGGGGGGAGAAAAAAGAAATGAGAGAAAAGAAATGAG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 10400833 21 + 11655695 TAGGGGAGA-----------------ATAGGGAATTAT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84837234 43 + 108143057 I e mm10.chr13 76464382 210 + 120421639 I e cebCap1.NW_016107830v1 356168 0 - 1393929 C a score=67495.000000 s hg38.chr5_GL383530v1_alt 53294 6 + 101241 ACTGGG s panTro5.chr5 20286180 6 + 181907262 ACTGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298478 6 + 183735486 ACTGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785271 6 - 13748885 ACTGGG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53821520 6 - 163208435 ACTGGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87845127 6 - 180051392 ACTGGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949549 6 - 181584905 ACTGGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172344 6 - 8785636 ACTGGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640680 6 + 27333823 ACTGGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910894 6 - 91010382 ACTGGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2030011 6 + 5179401 ACTGGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7728026 6 - 21726897 ACTGGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112545170 6 + 204313951 ACTGGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44993425 6 + 71252344 ACTGGA i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1433648 6 - 15889662 ACTGGA i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 607317 6 - 10520994 GCAGGC i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1307658 6 - 29863360 GCAAGC i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76464592 6 + 120421639 aatggg i mm10.chr13 I 210 C 0 s canFam3.chr3 14324572 6 + 91889043 GCAGGA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 10400854 6 + 11655695 GCTGGA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84837234 43 + 108143057 I e cebCap1.NW_016107830v1 356168 0 - 1393929 C a score=60643.000000 s hg38.chr5_GL383530v1_alt 53300 4 + 101241 TGAT s panTro5.chr5 20286186 4 + 181907262 TGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298484 4 + 183735486 TGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785277 4 - 13748885 TGAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53821526 4 - 163208435 TGAT i nomLeu3.chr2 C 0 I 757 s rheMac8.chr6 87845133 4 - 180051392 TGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949555 4 - 181584905 TGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172350 4 - 8785636 TGAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640686 4 + 27333823 TGAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910900 4 - 91010382 TGAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2030017 4 + 5179401 TGAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7728032 4 - 21726897 TGAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112545176 4 + 204313951 TGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44993431 4 + 71252344 TGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 356168 4 - 1393929 TGAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1433654 4 - 15889662 TGAT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 607323 4 - 10520994 TGAT i proCoq1.NW_012147189v1 C 0 I 3 s otoGar3.GL873536 1307664 4 - 29863360 TGAC i otoGar3.GL873536 C 0 I 3 s mm10.chr13 76464598 4 + 120421639 tcat i mm10.chr13 C 0 I 29 s canFam3.chr3 14324578 4 + 91889043 TAAT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 10400860 4 + 11655695 AGAG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84837234 43 + 108143057 I a score=71140.000000 s hg38.chr5_GL383530v1_alt 53304 9 + 101241 ---AGAAGTATC s panTro5.chr5 20286190 9 + 181907262 ---AGAAGTATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298488 9 + 183735486 ---AGAAGTATC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785281 9 - 13748885 ---AGAAGTATG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53822287 9 - 163208435 ---agaaGTATC i nomLeu3.chr2 I 757 C 0 s rheMac8.chr6 87845137 9 - 180051392 ---AGAAGTATC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949559 9 - 181584905 ---AGAAGTATC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172354 9 - 8785636 ---AGAAGTATC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640690 9 + 27333823 ---AGAAGTATC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910904 9 - 91010382 ---AGAAGTATC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2030021 9 + 5179401 ---AGAAGTATC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7728036 9 - 21726897 ---AGAAGTATC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112545180 9 + 204313951 ---AGAAGTATC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44993435 9 + 71252344 ---AGAAGTATC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 356172 9 - 1393929 ---AGAAGTATC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1433658 3 - 15889662 ---AGA------ i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 607330 6 - 10520994 ---AGGAGG--- i proCoq1.NW_012147189v1 I 3 C 0 s otoGar3.GL873536 1307671 6 - 29863360 ---AGGAGC--- i otoGar3.GL873536 I 3 C 0 s mm10.chr13 76464631 9 + 120421639 ---TAAAATATT i mm10.chr13 I 29 C 0 s canFam3.chr3 14324582 9 + 91889043 ---GAAAAGACC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 10400864 9 + 11655695 GAAAGAACT--- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84837234 43 + 108143057 I a score=1803917.000000 s hg38.chr5_GL383530v1_alt 53313 127 + 101241 TAGAGCTACCCTTGGGTTAGGCAAAGAA----------------------------------CGTTTGGAGGTCACAGTTCAGCAAGAT-GGG-AATGTGTA-GGGGCATGAGATGTATTGATGAGATGGGAGTTGAAGGGACAA-GA-GAAATCCTCCTTTCTCA s panTro5.chr5 20286199 127 + 181907262 TAGAGCTACCCTTGGGTTAGGCAAAGAA----------------------------------CGTTTGGAGGTCACAGTTCAGCAAGAT-GGG-AATGTGTA-GGGGCATGAGATGTATTGAGGAGATGGGAGTTGAAGGGACAA-GA-GAAATCCTCCTTTCTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298497 127 + 183735486 TAGAGCTACCCTTGGGTTAGGCAAAGAA----------------------------------CGTTTGGAGGTCACAGTTCAGCAAGAT-GGG-AATGTGTA-GGGGCATGAGATGTATTGAGGAGATGGGAGTTGAAGGGACAA-GA-GAAATCCTCCTTTCTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785290 127 - 13748885 TAGAGCTACCCTTGGGTTAGGCAAAGAA----------------------------------CGTTTGGAGGTCACAGTTCAGCAAGAT-GGG-AATGTGTA-GGGGCATGAGATGTATTGAGGAGATGGGAGTTGAAGGGACAA-GA-GAAATCCTCCTTTCTCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53822296 127 - 163208435 TAGGGCTACCCTTGGGTTAGGCAAAGAA----------------------------------CGTTTGGAGGTCACAGTTCAGGAAGAT-GGG-AATGTGTA-GGGGCATGAGATATATTGAGGAGATGGGAGTTGAAGGGACAA-GA-GAAATCGTCCTTTCTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87845146 127 - 180051392 TAGGGCTACCCTTAGATTAGGAAAAGAA----------------------------------TGTTTGGAGGTCACAGTTCACCAAGAT-GGG-AATGTGTA-GGGGCATGAGATGTATTGAGGAGATGGGAGTTGAAGGGACAA-GA-GAAATCCTCCTTTCTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949568 127 - 181584905 TAGGGCTACCCTTAGATTAGGAAAAGAA----------------------------------TGTTTGGAGGTCACAGTTCACCAAGAT-GGG-AATGTGTA-GGGGCATGAGATGTATTGAGGAGATGGGAGTTGAAGGGACAA-GA-GAAATCCTCCTTTCTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172363 127 - 8785636 TAGGGCTACCCTTAGATTAGGAAAAGAA----------------------------------TGTTTGGAGGTCACAGTTCACCAAGAT-GGG-AATGTGTA-GGGGCATGAGATGTATTGAGGAGATGGGAGTTGAAGGGACAA-GA-GAAATCCTCCTTTCTCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640699 127 + 27333823 TAGGGCTACTCTTAGATTAGGAAAAGAA----------------------------------TGTTTGGAGGTCACAGTTCACCAAGAT-GGG-ATTGTGTA-GGGGCATGAGATGTATTGAGGAGATGGGAGTTGAAGGGACAA-GA-GAAATCCTCCTTTCTCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1910913 127 - 91010382 TAGGGCTACCCTTAGATTAGGAAAAGAA----------------------------------TGTTTGGAGGTCTCAGTTCACCAAGAT-GGG-AATGTGTA-GGGGCATGAGATGTATTGAGGAGATGGGAGTTGAAGGGACGA-GA-GAAATCCTCCTTTCTCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2030030 127 + 5179401 TAGGGCTACCCTTAGATTAGGAAAAGAA----------------------------------TGTTTGGAGGTCACAGTTCACCAAGAT-GGG-AATGTGTA-GGGGCATGAGATGTATTGAGGAGATGGGAGTTGAAGGGACAA-GA-GAAATCCTCCTTTCTCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7728045 127 - 21726897 TAGGGCTACCCTTAGATTAGGAAAAGAA----------------------------------TGTTTGGAGGTCACAGTTCACCAAGAT-GGG-AATGTGTA-GGGGCATGAGATGTATTGAGGAGATGGGAGTTGAAGGGACAA-GA-GAAATCCTCCTTTCTCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112545189 127 + 204313951 TAGGGCTACTCGTGGGTTAGGCAAAGAA----------------------------------CATTTAGAGGTCACAGCTCAGCAAGAT-GGG-AATGTGCA-GGGGTATGAAATGTATTGAGGAGATGGGAATTGAAGGGACAA-GA-GAAATCCTCCTTTCTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44993444 127 + 71252344 TAGGGCTACTCTTGGGTTAGGCAAAGAA----------------------------------CGTTTAGAGGTCACAGCTCAGCAAGAT-GGG-AATGTGGA-GGGGCATGAGATGTATTGAGGAGATGGGAATTGAAGGGACAA-GA-GAAATCCTCCTTTCTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 356181 127 - 1393929 TAGGACTACTCTTGGGTTAGGCAAAGAA----------------------------------CGTTTAGAGGTCTCAGCTCAGCAAGAT-GGG-AATGTGTA-GGGGCAGGAGATATATTGAGGAGATGGGAATTGAAGGGACAA-GA-GAAACCCTCCTTTCTCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1433661 92 - 15889662 ---------------------------------------------------------------------AGGTCACAGCTCAGCAAGAT-GGG-AATGTGTA-GGGGCATGAGATGTATTGAGGAGATGGGAATTGAAGGGACAA-GA-GAAATCCTCCTTTCTCA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84837277 128 + 108143057 TAGGGCTACCATTGGGTTAGGCAAAGAA----------------------------------CATCTGGAGGTCACAGCTCAGTGGGATGGGG-AATGCACA-GGGGCATGAGATGTATTGAGGTGATGAAAACTCAAGGGACAA-GA-ATAATTCTCCTTTCTCA i micMur3.chr12 I 43 I 180 s proCoq1.NW_012147189v1 607336 128 - 10520994 TAGAGCTACCATTGGGTTAGGCAAAGAA----------------------------------CATCTGGAGGTCACAGCTCAGTGGGATGGGG-AATGCATA-GGGTCATGAGATGTATTGAGGCGATGAAAACTCAAGGGATAA-GA-ATAATCCTCCTTTCTCA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1307677 113 - 29863360 TGGTACTACCA-TGGGTTAGTT----AG----------------------------------CATCTGGAGGTCACAGACC---------TGG-AATGTGCA-GGGT-ATGAGACATACTGAGGAGAGGAAAATTCAAGGGACAA-GA-AGAATTCTCCTTTCTCA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76464640 160 + 120421639 GGGAGTGGTTCATGTTCTAGATGAGAAAGCAACAAGATGTGAGGGTGAGAGGCTCTAGGTAGCATCTGAAGGTTAAAGCTTAA-AAGAC-GGA-GATGGATGCAGAACATAATGTATACAAAGAAATGGGGACTTGTAGGATGAA-GA-G-AATCCTACTTTCTCA i mm10.chr13 C 0 C 0 s canFam3.chr3 14324591 128 + 91889043 TAGTACTGCCCTTGCATTGGACAAAGAG----------------------------------CATCTGGAGGCCACAACTCAAGGGGAT-GGGAAATATGTG-AGGGT-TGAGATGTATTGAGGAGATGAGAATTTAAGGGACAA-GATGAAATTCTCCTTTCTCA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 10400873 116 + 11655695 TAACATTACCCTTGAATTAGGCAAAGAG----------------------------------CATTTTGATGCCACAGCTCA--------GGG-AG-----A-AGGGCATTGAATGTAATGAGTAGACAGGAATTCAAGAAAAAATTA-AATATCCCGATTTATCA i dasNov3.JH570378 C 0 C 0 a score=920138.000000 s hg38.chr5_GL383530v1_alt 53440 73 + 101241 TATAACCCCTTCGTTCTC---CCCTCCTC---------------CTGCT---------------CTCTTCTGCTTGTTTTACTAAATAATAATGAAGAATCATTGT------------ s panTro5.chr5 20286326 73 + 181907262 TATAACCCCTTCGTTCTC---CCCTCCTC---------------CTGCT---------------CTCTTCTGCTTGTTTTACTAAATAATAATGAAGAATCATTGT------------ i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298624 73 + 183735486 TATAACCCCTTCGTTCTC---CCCTCCTC---------------CTGCT---------------CTCTTCTGCTTGTTTTACTAAATAATAATGAAGAATCATTGT------------ i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785417 73 - 13748885 TATAACCCCTTCGTTCTC---CCCTCCTC---------------CTGCT---------------CTCTTCTGCTTGTTTTACTAAATAATAATGAAGAATCATTGT------------ i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53822423 73 - 163208435 TATAACCCCTTCATTCTC---CCCTCCTC---------------CTGCT---------------CTCTTCTGCTTGTTTTACTAAATAATAATGAACAATCATTGT------------ i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87845273 73 - 180051392 TATAACCCCTTTGTTCTC---CCCTCTTC---------------CTGCT---------------CTCTTCTGCTTGTTTCACTAAATAACAATGAAGAATCATTGT------------ i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949695 73 - 181584905 TATAACCCCTTTGTTCTC---CCCTCTTC---------------CTGCT---------------CTCTTCTGCTTGTTTCACTAAATAACAATGAAGAATCATTGT------------ i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172490 73 - 8785636 TATAACCCCTTTGTTCTC---CCCTCTTC---------------CTACT---------------CTCTTCTGCTTGTTTCACTAAATAACAATGAAGAATCATTGT------------ i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640826 73 + 27333823 TATAACCCCTTCGTTCTC---CCCTCTTC---------------CTGCT---------------CTCTTCTGCTTGTTTCACTAAATAACAATGAAGAATCATTGT------------ i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1911040 73 - 91010382 TATAACCCCTTAGTTCTC---CCCTCCTC---------------CTGCT---------------CTCCTCTGCTTGTTTCACTAAATAACAATGAAGAATCATTGT------------ i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2030157 73 + 5179401 TATAACCCCTTCGTTCTC---CCCTCTTC---------------CTGCT---------------CTCTTCTGCTTGTTTCACTAAATAACAATGAAGAATCATTGT------------ i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7728172 73 - 21726897 TATAACCCCTTCATTCTC---CCCACCTC---------------CTGCT---------------CTCTTCTGCTTGTTTCACTAAATAACAATGAAGAATCATTGT------------ i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112545316 73 + 204313951 TATAACCCCTTTGTTCTC---CCCTCCTC---------------CTGCT---------------CTCTTCTCTTTGTTTTACTAAATAACAATGAATAATCGTTGT------------ i calJac3.chr2 C 0 I 17 s saiBol1.JH378106 44993571 73 + 71252344 TATAACCCCTTTGTTCTC---CTCTCCTC---------------CTGCT---------------CTCTTCTGCTTGTTTTACTAAATAACAATGAAGAATCATTGT------------ i saiBol1.JH378106 C 0 I 17 s cebCap1.NW_016107830v1 356308 72 - 1393929 TATAACCCCTTTGTTCTC---CCCTCCTC---------------CTACT---------------TTCTTCTGCTTGTTTTAC-AAATACCAATGAAGAATCATTGT------------ i cebCap1.NW_016107830v1 C 0 I 17 s aotNan1.NW_018506370v1 1433753 73 - 15889662 TATAACCCCTTCATTCTC---CCCTCCTC---------------CTGCG---------------CTCTTCTGCTTGTTTTACTAATTAACAATGAAGAATCATTGT------------ i aotNan1.NW_018506370v1 C 0 I 17 s proCoq1.NW_012147189v1 607464 42 - 10520994 ----------------------------------------------------------------GTCTTCTGCTTGTTTTACTGAAGAACAGTGAAGGATGATGGT------------ i proCoq1.NW_012147189v1 C 0 I 9 s otoGar3.GL873536 1307790 88 - 29863360 CGTAAGCCGTTCATTCTC---CCTTCTTC---------------CTCTTTCCCCTCATCCCTCTGTCTTCTGCTTGTTTTACCAAAGAACAAGGAAGAATCATTGT------------ i otoGar3.GL873536 C 0 I 1 s mm10.chr13 76464800 68 + 120421639 CACAATTACTTCA--CTA---ATTTCCTT---------------CTATC---------------ATATTCTGCTTATTTTATTAAAGAGC---TGGGGATCACTGT------------ i mm10.chr13 C 0 C 0 s canFam3.chr3 14324719 91 + 91889043 CAAAATCCTTTTATCCTCAATCCCTCCCCTGACCCCCACCCCCGCCACT---------------GTGTTCTGTTTGTTTTCCTAAAGAGAGATGAAGAATCGTTGT------------ i canFam3.chr3 C 0 I 17 s dasNov3.JH570378 10400989 82 + 11655695 --CAAAACTTTTGT-GTC---CCTTCCTC---------------CCACC---------------ACCTTCTACTTGTTTTACTAAAGCAAGATGAAGAATCATGGTATTGTGCATGCT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84837405 180 + 108143057 I a score=69230.000000 s hg38.chr5_GL383530v1_alt 53513 7 + 101241 TATCCCA s panTro5.chr5 20286399 7 + 181907262 TATCCCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298697 7 + 183735486 TATCCCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785490 7 - 13748885 TATCCCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53822496 7 - 163208435 TATCCCG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87845346 7 - 180051392 TATCTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949768 7 - 181584905 TATCTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172563 7 - 8785636 TATCTCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640899 7 + 27333823 TATCTCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1911113 7 - 91010382 TATCTCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2030230 7 + 5179401 TATCTCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7728245 7 - 21726897 TATCTCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112545406 7 + 204313951 CACCCCA i calJac3.chr2 I 17 C 0 s saiBol1.JH378106 44993661 7 + 71252344 CACTCCA i saiBol1.JH378106 I 17 C 0 s cebCap1.NW_016107830v1 356397 7 - 1393929 CACCCCA i cebCap1.NW_016107830v1 I 17 C 0 s aotNan1.NW_018506370v1 1433843 7 - 15889662 CACCCCA i aotNan1.NW_018506370v1 I 17 C 0 s otoGar3.GL873536 1307879 7 - 29863360 TATTTGA i otoGar3.GL873536 I 1 I 2 s mm10.chr13 76464868 7 + 120421639 TTTCTGA i mm10.chr13 C 0 I 5 s canFam3.chr3 14324827 7 + 91889043 CAGCCCA i canFam3.chr3 I 17 C 0 s dasNov3.JH570378 10401071 7 + 11655695 TACCACA i dasNov3.JH570378 C 0 I 7 e micMur3.chr12 84837405 180 + 108143057 I e proCoq1.NW_012147189v1 607506 9 - 10520994 I a score=1556619.000000 s hg38.chr5_GL383530v1_alt 53520 129 + 101241 GGCTCTGCTTTAGGCAAT--C--ATATCCAACTCCTGACCAATTCACTCCACAGTCCTGAGAAGA-TTATATGAGTCTGCCTGGGAAAA----------TGGTCTA----------------ATTAGTG---TGAACTCCCAGCATGTCAGTGAAAACCAGCT s panTro5.chr5 20286406 129 + 181907262 GGCTCTGCTTTAGGCAAT--C--ATATCCAACTCCTGACCAATTCACTCCACAGTCCTGAGAAGA-TGATATGAGTCTGCCTGGAAAAA----------TGGTCTA----------------ATTGGTG---TGAACTCCCAGCATGTCAGTGAAAACCAGCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298704 129 + 183735486 GGCTCTGCTTTAGGCAAT--C--ATATCCAACTCCTGACCAATTCACTCCACAGTCCTGAGAAGA-TGATATGAGTCTGCCTGGAAAAA----------TGGTCTA----------------ATTGGTG---TGAACTCCCAGCATGTCAGTGAAAACCAGCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785497 129 - 13748885 GGCTCTGCTTTAGGCAAT--C--ATATCCAACTCCTGAACAATTCACTTCACAGCCCTGAGAAGA-TTATATGAGTCTGCCTGGGAAAA----------TGGTCTA----------------ATTAGTG---TGAACTCCCAGCACTTCAGTGAAAACCAGCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53822503 129 - 163208435 GGCTCTGCTTTAGGCAAT--C--ATATCCAACTCCTGACCAATTCACTCAACAGTCCTGAGAAGA-TTAGATAAGTCTGCCTGGAAAAA----------TGGTCTA----------------ATTAGTG---TGAACTCCCAGCACATCAGTGAAAACCAGCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87845353 129 - 180051392 GGCTCTGCTTTAGGCAAT--C--ATATCCAACTCCTGAGCAATTCACTCAACAGTCCTGAGAAGA-TTAGATGAGTCTGCCTGGAAAAA----------TGGTCTA----------------ATTAGTG---GGAACTCCCAGCACGTCAGTGAAAACCAGCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949775 129 - 181584905 GGCTCTGCTTTAGGCAAT--C--ATATCCAACTCCTGAGCAATTCACTCAACAGTCCTGAGAAGA-TTAGATGAGTCTGCCTGGAAAAA----------TGGTCTA----------------ATTAGTG---GGAACTCCTAGCACGTCAGTGAAAACCAGCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172570 129 - 8785636 GGCTCTGCTTTAGGCAAT--C--ATATCCTACTCCTGAGCAATTCACTCAACAGTCCTGAGAAGA-TTAGATGAGTCTGCCTGGAAAAA----------TGGTCTA----------------ATTAGTG---GGAACTCCCAGCACGTCAGTGAAAACCAGCC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1640906 129 + 27333823 GGCTCTGCTTTAGGCAAT--C--ATATCCAACTCCTGAGCAATTCACTCAACAGTCCTGAGAAGA-TAAGATGAGTCTGCCTGGAAAAA----------TGGTCTA----------------ATTAGTG---GGAACTCCCAGCACGTCAGTGAAAACCAGCC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1911120 129 - 91010382 GGCTCTGCTTTAGGCAAT--C--ATATCCAACTCCTGAGCAATTCACTCAACAGTCCTGAGAAGA-TTAGATGAGTCTGCCTGGAAAAA----------TGGTCTA----------------ATTAGTG---GGAACCCCCAGCACGTCAGTGAAAACCAGCC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2030237 129 + 5179401 GGCTCTGCTTTAGGCAAT--C--ATATCCAACTCCTGAGCAATTCACTCAACAGTCCTGAGAAGA-TTAGATGAGTCTGCCTGGAAAAA----------TGGTCTA----------------ATTAGTG---GGAACTCCCAGCACGTCAGTGAAAACCAGCC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7728252 129 - 21726897 GGCTCTGCTTTAGGCAAT--C--ATACCCAACTCCTGAGCAATTCACTCAACAGTCCTGAGAAGA-TTAGATGAGTCTGCCTGGAAAAA----------TGGTCTA----------------ATTAGTG---GGAACTTCCAGCATGTCAGTGAAAACCAGCC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112545413 129 + 204313951 GGCTCTGCTTTGGGCAAT--C--ATGTACAATTCCTGACCAATTCACCCAACAGTTCTAAGAAGA-CTAGATGAGTATGCCTGGAAAAA----------TGGTCTA----------------ATTAGTG---TGAAATCCCAGGATATGAGTGAAAACCAGAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44993668 129 + 71252344 GGTTCTGCTTTGGGCAAT--C--ATGTATAATTCCTGACCAATTCACCCAACAGTCTTGAGAAGA-TTAGATGAGTATGCCTGGAAAAA----------TGGTCTA----------------ATTAGTG---TGAACTCCCAGGACATGAGTGAAAACCAGAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 356404 129 - 1393929 GTCTCTGCTTTGGGCAAT--C--ATGTACAATTCCTGACCAATTCACCCAAGAATCCTGAGAAGA-TTGGATGAGTATGCCTGGAAAAA----------TGGTCTA----------------ATTAGTG---TGGACTCCCAGGACATGAGTGAAAACCAGAC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1433850 129 - 15889662 CATTCTGCTTTGGGCAAT--C--ATGTACAATTCCTGACCAATTCACCCAACAGTCCTGAGAAGA-CTAGATGAGTATGCCTGGAAAAA----------TGGTCTA----------------ATTAGTG---TGAACTCCCAGGACATGAGTGAAAACCAGAC i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 607515 129 - 10520994 GGCTCTGCGCTAGGCAAT--CTCGTATCCCCCTCCTGACCAATGCATCCATCAGTCCTGGGAGGA-ATGGATGACTGTGCCTGGCAAAATGATCTGTGGTGGTCTA----------------AGTAGTG---TGAACTCAT------------AGCACTAACC i proCoq1.NW_012147189v1 I 9 C 0 s otoGar3.GL873536 1307888 136 - 29863360 AGCTCTGCTCTAGGCACT--CCTGGGTCCAACCCCTGACCACTGCACCC-TCAGGCCTGAGAGGG-CTGGATGAATCCGCCAGCCAGAATGGTCTGCAGTGGTCTG----------------ATTTGTGAACGGAGCACACA-------AGGGAAAACTAACT i otoGar3.GL873536 I 2 C 0 s mm10.chr13 76464880 139 + 120421639 AGCTATAATCCAAGCTCC-AC--ACAGCCACCTTCAGATCAACCTGCCCAAAGATCCTGAGGTGA-TTTGGTGCTGCTGCCTGAGAGAGTGGTCCTTTGTAGTCTA----------------CTTGGAA---TGAACTCTGAACACATCAGTTATAAGCACT- i mm10.chr13 I 5 C 0 s canFam3.chr3 14324834 140 + 91889043 GGCTTTGCTTTAGGCTCTTCC--GTGTCCAACTTCTAGCCAGTCCA-TCAACAGTCTTGGGAAAACTTAGATGACCCTGCACAGCAAGGTTGTCTGTGGTGATCTA----------------AGTAGCA---TAAACTACC-GATCATTGGTAAAAAGTAGCC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 10401085 146 + 11655695 GGCTCTGCTCTGGGCAATTAC--ACTTCCAATTTCTAATCATCCTAC-CAACAATCCTGGCAGGA-TTAGATAACTTCACATGGTGGAG----------TGGTCTATGGTTGTCTAATTCGTATTGGTG---AGAACTGCCAACACTTCAGTGAAAATTAACC i dasNov3.JH570378 I 7 C 0 e micMur3.chr12 84837405 180 + 108143057 I a score=1050829.000000 s hg38.chr5_GL383530v1_alt 53649 71 + 101241 ATGGTGATTGTGGGTTCAGAAAAAGAATA-TCCACTAGAAGGACTTAGAAATAACACATGGAGAAGTTGTCA s panTro5.chr5 20286535 71 + 181907262 ATGGTGATTGTGGGTTCAGAAAAAGAATA-TCCACTAGAAGGACTTAGAAATAACATATGGAGAAGTTGTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298833 71 + 183735486 ATGGTGATTGTGGGTTCAGAAAAAGAATA-TCCACTAGAAGGACTTAGAAATAACATATGGAGAAGTTGTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785626 71 - 13748885 ATGGTGATTGTGGGTTCAGAAAAAGAATA-TCCACTAGAAGGACTTAGAAATAACATATGGAGAAGTTGTCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53822632 71 - 163208435 ATGGTGATTGTGGGTTCAGAAAAAGAATA-TGCACTAGAAGGACTTAGAAATAACATATGGAGAAGCTGTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87845482 71 - 180051392 ATGGTGATTGTGGGTTCAGAAAAAGACTA-CCCACTAGAGGGACTTAGAAATAACATATGGAGAAGTTGTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949904 71 - 181584905 ATGGTGATTGTGGGTTCAGAAAAAGACTA-TTCACTAGAGGGACTTAGAAATAACATATGGAGAAGTTGTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172699 71 - 8785636 ATGGTGATTGTGGGTTCAGAAAAAGACTA-TCCACTAGAGGGACTTAGAAATAGCATATGGAGAAGTTGTCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1641035 71 + 27333823 AGGGTGATTGTGGGTTCAGAAAAAGACTA-TCCACTAGAGGGACTTAGAAATAACATATGGAGAAGTTGTCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1911249 71 - 91010382 ATGGTGATTGTAGATTCAGAAAAAGACTA-TCCACTAGAAGGACTTAGAAATAACATATGGAGAAGTTGTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2030366 71 + 5179401 ATGGTGATTGTGGGTTCAGAAAAAGAATA-TCCACTAGAGGGACTTAGAAATAACATATGGAGAAGTTGTCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7728381 71 - 21726897 ATGGTGATTGTGGGTTCAGAAAAAGAATA-TCCACTAGAAGGACTTAGAAATAACATATGGAGAAGTTGTCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112545542 71 + 204313951 ATGGTGATTGTGGGTTCAGAAAAAGAATA-TCCACTAGAAGGACTTGGAAATAACATATGGAGAGGTTTTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44993797 71 + 71252344 ATGGTGATTGTGGGCTCAGAAATAGAATA-TCCACTAGAAGGACTTGGAAATAACATATGAAGAGGTTTTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 356533 71 - 1393929 ATGGTGATTGTGGGTTCAGAAATAGAATA-TCCACTAGAAGGACTTGGAAATAACATATGGAGAGGTTTTCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1433979 71 - 15889662 ATGGTGATTGTGGGTTCAGAAAAAGAATA-TCCACTAGAAGGACTTGGAAATAACATATGGAGGGGTTTTCA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84837585 70 + 108143057 ATGGTGATTGTGGAATCAGAAAAGTAATA-TCCATTGGAA-GACTTAGAAATAACATAGAGAGAAGTTGTTA i micMur3.chr12 I 180 C 0 s proCoq1.NW_012147189v1 607644 70 - 10520994 ATGGTGATTGTGGAATCAGAAAAGAAATA-TTCATTAGAA-GACTTAGAAATAACATATGGAGAAGTTGTCA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1308024 39 - 29863360 ACGGTGATTGTGGAATCTGAGAAGAAAGA-TCCATTAGAA-------------------------------- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76465019 67 + 120421639 CTAGTGGTTGTGGAATCAGAAA--GCATA-TCCACTAGGAGGACTT-GAGAGAGCATATATA-AAGTTGCTA i mm10.chr13 C 0 C 0 s canFam3.chr3 14324974 72 + 91889043 CCTGTGATTGTTGAATCAGAAAATTAATATTCCCCTAGAAGGACTTAGAAATAACAAGTAGAAAAGTTGTTA i canFam3.chr3 C 0 I 215 s dasNov3.JH570378 10401231 68 + 11655695 CAGGTCGTTGTGGAACACAAACAGGAATC-TCCATTTAGAGGACTTAGAAATGAGATGTAGA---GTTGTCA i dasNov3.JH570378 C 0 C 0 a score=7471565.000000 s hg38.chr5_GL383530v1_alt 53720 524 + 101241 TTTGCTGTGGCTAGGCACATACATTTTTTATAATTTATATTGAATTGATCATTT-ATTTTCCAAGTAT-TTTTTCAAAAGACAGGCAGAG--ATCGAATGAGTTTCTAAAAACGTGATTACTTGAAGAATTATTTCACTAATCCACACTAGCAAATATCAAAATTGGGAGCGTTACAAGAATCATC------AATTATGTATTACAAGTGGTTCTCAGGGGCTGTAGTTCCAG---------------CATG---------TCCTACACGAATCCAATTTGTTTTCTGCATTCTAGAGTGCTGGACTGTTGATAA-TTACTTTTATG-----------TCAACTTTTCACCAAAAGAT-ATATGTGGTATTCCTTTGCTTAT-AGTACGAATACATTATTTGACTATAGGAGTTAGTTATCAATTCAGTCTA---------TTTGCTTTGAGAAGAG----GAGATTGTTATCTTTTCTTGAGAGGGATCAACTTTTGCC-----TCTATAGTATTACAAATTGTTTCTCTTGGATACATCTGGTATATTGAAGTACTCAATTTGTTTT---ATGATGTGCTTTTAGAACTTG s panTro5.chr5 20286606 524 + 181907262 TTTGCTGTGGCTAGGCACATACATTTTTTATAATTTATACTGAATTGATCATTT-ATTTTCCAAGTAT-TTTTTCAAAAGACAGGCAGAG--ATAGAATGAGTTTCTAAAAACGTGATTACTTGAAGAATTATTTCACTAATCCACACTAGCAAATATCAAAATTGGGAGTGTTACAAGAATCATC------AATTATGTTTTACAAGTGGTTCTCAGGGTCTGTATTTCCAG---------------CATG---------TCCAACATGAATCCAATTTGTTTTCTGCATTCTAGAGTGCTGGACTGTTGATAA-TTACATTTATG-----------TCAACTTTTCACCAAAAGAT-ATATGTGGTATTCCTTTGCTTAT-AGTATGAATACATTATTTGACTATAGGAGTTAGTTATCATTTCAGTCTA---------TTTGCTTTGAGAAGAG----GAGATTGTTATCTTTTCTTGAGAGGGATCAACTTTTGCC-----TCTATAGTATTACAAATTGTTTCTCTTGGATACATCTGGTATATTGAAGTACTCAATTTGTTTT---ATGATGTGCTTTTAGAACTTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20298904 524 + 183735486 TTTGCTGTGGCTAGGCACATACATTTTTTATAATTTATACTGAATTGATCATTT-ATTTTCCAAGTAT-TTTTTCAAAAGACAGGCAGAG--ATAGAATGAGTTTCTAAAAACGTGATTACTTGAAGAATTATTTCACTAATCCACACTAGCAAATATCAAAATTGGGAGTGTTACAAGAATCATC------AATTATGTTTTACAAGTGGTTCTCAGGGTCTGTATTTCCAG---------------CATG---------TCCAACATGAATCCAATTTGTTTTCTGCATTCTAGAGTGCTGGACTGTTGATAA-TTACATTTATG-----------TCAACTTTTCACCAAAAGAT-ATATGTGGTATTCCTTTGCTTAT-AGTATGAATACATTATTTGACTATAGGAGTTAGTTATCATTTCAGTCTA---------TTTGCTTTGAGAAGAG----GAGATTGTTATCTTTTCTTGAGAGGGATCAACTTTTGCC-----TCTATAGTATTACAAATTGTTTCTCTTGGATACATCTGGTATATTGAAGTACTCAATTTGTTTT---ATGATGTGCTTTTAGAACTTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4785697 519 - 13748885 TTTGCTGTGGCTAGGCACGTACATTTTTTATAATTTATACTGAATTGATCATTT-ATTTTCCAAGTAT-TTTTTCAAAAGACAGGCAGAG--ATAGAATGAGTTTCTAACAACGTGATTACTTGAAGAATTATTTCACTAATCCACACTAGCAAATATCAAAATTGGGAGCGTTACAAGAATCATC------AATTATGTATTACAAGTGGTTCTCAGGGTCTGTAGTTCCAG---------------CATG---------TCCTACATGAATCCAATTTGTTTTCTGCATTCTAGAGTGCTGGACTGTTGATAA-TTACTTTTATG-----------TCAACTTTTCACCAAAAGAT-ATATGTGGTATTCCTTTGCTTAT-AGTACGAATACATTATTTGACTATAGGAGTTAGTTATCAATTCAGTCTA---------TTTGCTTT-----GAG----GAGATTGTTATCTTTTCTTGAGAGGGATCAACTTTTGCC-----TCTATAGTATTGCAAATTGTTTGTCTTGCATACACCTGGTATATTGAAGTACTCAATTTGTTTT---ATGATGTGCTTTTAGAACTTG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53822703 548 - 163208435 TTTGCTGTGGCTAGGCACATGCATTTTTTATAATTTATACTGAATTGATCATTT-ATTTTCCAGGTAT-TTTTTCAAAAGACAGGCAGAG--ATAGAATGATTTCCTAAAAACGTGATTACTTGAAGAATTATTTCACTAATCCACACTAGCAAATAACAAAATTGGGAGCGTTACAAGAATCATC------AATTATGTATTACAAGTGGTTCTCAGGGGCTGTAGTTCCAGCAGCCAGGATTCCTACATGTTCCAGGATTCCTACATGAATCCAATTTGTTTTCTGCATTCTAGAGTGCTGGACTGTTGATAA-TTACTTTTATG-----------TTAACTTTTCACCAAAAGAT-ATATGTGGTATTCCTTTGCATAT-AGTATGAATACATTATTTGACTATAGGAGTTAGTTATCAATTCAGTCTA---------TTTGCTTTGAGAAGAG----GAGATTGTTATCTTTTCTTGAGAGGGATCAACTTTTGCC-----TCTATAGTATTACAGATTGTTTCTCTTGGATACATCTGGTATATTGAAGTACTCAATTTGTTTT---ATGATGTGCTTTTAGAACTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87845553 512 - 180051392 TTTGCCATACTT-------TATATTCTTTATAGTTTATATTGAATTGATCATTT-ATTTTCCAAGTAC-TTTTTCAAAAGACAGGCAGAG--ATAGAATGAGTTTCTAAAAATCTGATTACTTGAAGAATTATTTCACTAATCCATACTAGCAAACATCAAATTTGGGAGCGTTACAAGAATCATC------AATTATGTATTACAAGTGGTTCTCAGGGGCTGTAGTTCCAG---------------CATG---------TTCTACATGAATCCAATTTGTTTTCTGCATTCTAGAGTACTGGACTGTTGGTAA-TTACTTTTATG-----------TTAACTTTTCACCAAAAGAT-ACATGTGGTATTCCTTTGCATAT-AGTACAAATACATTATTTGACTATAGGAGTTAGTTATCAATTCAGTCTA---------TTTGCTTT-----GAG----GAGATTGTTATCTTTTCTTAAGAGGGATCAACTTTTGCC-----TCTATAGTATTACAGATTGTTTCCCTTGGATACATCTGGTATATTGAATTACTCAATTTGTTTT---AAGATGTGCTTTTAGAACTTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87949975 512 - 181584905 TTTGCCATACTT-------TATATTCTTTATAGTTTATATTGAATTGATCATTT-ATTTTCCAAGTAC-TTTTTCAAAAGACAGGCAGAG--ATAGAATGAGTTTCTAAAAATCTGATTACTTGAAGAATTATTTCACTAATCCATACTAGCAAACATCAAATTTGGGAGCGTTACAAGAATCATC------AATTATGTATTACAAGTGGTTCTCAGGGGCTGTAGTTCCAG---------------CATG---------TTCTACATGAATCCAATTTGTTTTCTGCATTCTAGAGTGCTGGACTGTTGGTAA-TTACTTTTATG-----------TTAACTTTTCACCAAAAGAT-ACATGTGGTATTCCTTTGCATAT-AGTACAAATACATTATTTGACTATAGGAGTTAGTTATCAATTCAGTCTA---------TTTGCTTT-----GAG----GAGATTGTTATCTTTTCTTAAGAGGGATCAACTTTTGCC-----TCTATAGTATTACAGATTGTTTCCCTTGGATACATCTGGTATATTGAATTACTCAATTTGTTTT---AAGATGTGCTTTTAGAACTTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1172770 512 - 8785636 TTTGCCACACTT-------TATATTCTTTATAGTTTATATTGAATTGATCATTT-ATTTTCCAAGTAC-TTTTTCAAAAGACAGGCAGAG--ATAGAATGAGTTTCTAAAAATCTGATTACTTGAAGAATTATTTCACTAATCCATACTAGCAAACATCAAATTTGGGAGCGTTACAAGAATCATC------AATTATGTATTACAAGTGGTTCTCAGGGGCTGTAGTTCCAG---------------CATG---------TTCTACATGAATCCAATTTGTTTTCTGCATTCTAGAGTGCTGGACTGTTGGTAA-TTACTTTTATG-----------TTAACTTTTCACCAAAAGAT-ACATGTGGTATTCCTTTGCATAT-AGTACAAATACATTATTTGACTATAGGAGTTAGTTATCAATTCAGTCTA---------TTTGCTTT-----GAG----GAGATTGTTATCTTTTCTTAAGAGGGATCAACTTTTGCC-----TCTATAGTATTACAGATTGTTTCCCTTGGATACATCTGGTATATTGAATTACTCAATTTGTTTT---AAGATGTGCTTTTAGAACTTG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1641106 518 + 27333823 TTTGCCATGCTG-GGCACATATATTCTTTATAGTTTATATTGAATTGATCATTT-ATTTTTCAAGTAC-TTTTTCAAAAGACAGGCAGAG--ATAGAATGAGTTTCTAAAAATCTGATTACTTGAAGAATTATGTCACTAATCCATACTAGCAAACATCAAATTTGGGAGCGTTACAAGAATCATC------AATTATGTATTACAAGTGGTTCTCAGGGGCTGTAGTTCCAG---------------CATG---------TTCTACATGAATCCAATTTGTTTTCTGCATTCTAGAGTGCTGGACTGTTGGTAA-TTACTTTTATG-----------TTAACTTTTCACCAAAAGAT-ACATGTGGTATTCCTTTGCATAT-AGTACAAATACATTATTTGACTATAGGAGTTAGTTATCAATTCAGTCTA---------TTTGCTTT-----GAG----GAGATTGTTATCTTTTCTTAAGAGGGATCAACTTTTGCC-----TCTATAGTATTACAAATTGTTTCCCTTGGATACATCTGGTATATTGAATTACTCAATTTGTTTT---AAGATGTGCTTTTAGAACTTG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1911320 524 - 91010382 TTTGCCGTGGCTGGGCACATATATTTTTTATAATTTATATTGAATTGATCATTT-ATTTTCCAAGTAC-TTTTTCAAAAGACAGGCAGAG--ATAGAATGAGTTTCTAAAAATCTGATTACTTGAAGAATTATTTCACTAATCCATACTAGCAAACATCAAATTTGGGAGCGTTACAAGAATCATC------AATTATGTATTACAAGTGGTTCTCAGGGGCTGTAGTTCCAG---------------CATG---------TTCTACATGAATCCAATTTGTTTTCTGCATTCTAGAGTGCTGGACTGTTGATAA-TTACTTTTATG-----------TTAACTTTTCACCAAAAGAT-ACATGTGGTATTCCTTTGCATAT-AGTACAAATACATTATTTGACTATAGGAGTTAGTTATCAATTCAGTCTA---------TTTGCTTTGAGAAGAG----GAGATTATTATCTTTTCTTAAGAGGGATCAACTTTTGCC-----TCTATAGTATTAAAAATTGTTTCTCTTGGATACATCTGGTATATTGAATTACTCAATTTGTTTT---AAGATGTGCTTTTAGAACTTG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2030437 519 + 5179401 TTTGCCGTGGCTGGGCACATATATTTTTTATAGTTTATATTGAATTGATCATTT-ATTTTCCAAGTAC-TTTTTCAAAAGACAGGCAGAG--ATAGAATGAGTTTCTAAAAATCTGATTACTTGAAGAATTATTTCACTAATGCATACTAGCAAACATCAAATTTGGGAGCGTTACAAGAATCATC------AGTTATGTATTACAAGTGGTTCTCAGGGGCTGTAGTTCCAG---------------CATG---------TTCTACATGAATCCAATTTGTTTTCTGCATTCTAGAGTGCTGGACTGTTGGTAA-TTACTTTTATG-----------TTAACTTTTCACCAAAAGAT-ACATGTGGTATTCCTTTGCATAT-AGTACAAATACATTATTTGACTATAGGAGTTAGTTATCAATTCAGTCTA---------TTTGCTTT-----GAG----GAGATTGTTATCTTTTCTTAAGAGGGATCAACTTTTGCC-----TCCATAGTATTACAAATTGTTTCCCTTGGATACATCTGGTATATTGAATTACTCAATTTGTTTT---AAGATGTGCTTTTAGAACTTG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7728452 524 - 21726897 TTTACCATGGCTGGGCACATATATTTTTTATAATTTGTATTGAATTGATCATTT-ATTTTCCAAGTAC-TTTTTCGAAAGACAGGCAGAG--ATAGAATGAGTTTCTAAAAATCTGATTACTTGAAGAATTATTTCACTAATCCATACTAGCAAACATCAAATTTGGGAGCATTACAAGAATCATC------AATTATGTATTACAAGTGGTTCTCAGGGGCTGTAGTTCCAG---------------CATG---------TTCTACATGAATCCAATTTGTTTTCTGCATTCTAGAGTGCTGGACTGTTGATAA-TTACTTTTATG-----------TTAACTTTTCACCAAAAGAT-ATATGTGGTATTCCTTTGCATAT-AGTACAAATACATTATTTGACTATAGGAGTTAGTTATCAATTCAGTCTA---------TTTGCTTTGAGAAGAG----GAGATTGTTATCTTTTCTTAAGAGGGATCAACTTTTGCC-----TCTATAGTATTACAAATTGTTTCTCTTGGATACATCTGGTATATTGAATTACTCAATTTGTTTT---AAGATGTGCTTTTAGAGCTTG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112545613 519 + 204313951 TTTGCTGTGTCTGGGCACATTGATTTTTTATAATTTATACTGAATTTATCATTT-ATTTTCCAAATAT-TTTTTCAAAAGACAGGCAGAG--ATAGAATAAGTTTCTAAAAACCTGTTTACTTGAAGCATTATTTCACAAATCCACCCTAGCAAACATCAAATTTGGGAGCTTTCCAAGAATCATC------AGTTATGTATCACAAGTGGTTCTTGGGGGCCGTAGTTGCAG---------------AATG---------TTCTACATGAATCCAATTTGTTTTCTGCATTCTAGAGTGCTGGACTGTTGATAA-TTACTTGTATG-----------CTAACTTTTCACCAAAAGAT-ATGTGTGGTATTCCTTTGCATAT-AGTACAAATAAATTATTTGACTACAGGAGTTAATTATTAATTTAGTCTA---------TCTGCTTT-----GAG----GAGACTGTTATCTTTTCTTGAGAGGGATCAACTTTTGCC-----TCTACTGTATTATAGATTGTTTCTCTTGGATGTATCTGGTATATTGAAGTATTCATTTTGCTTT---ATGATATGCTTTTAGAAGTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44993868 520 + 71252344 TTTGCTGTGCCTGGTCACatttattttttataatttataCTGAATTTATCATTT-ATTTTCCAAGGAT-TTTTTCAAAAGACAGGGAGAGACATAGAATAAGTTTCTAAAAACCTGTTTACTTGAAGCATTATTTCACTAGTCCACCCTAGCAAACATCAAATTTGGGAGCTTTACAAGAATCATC------AGTTATGTATTACAAGTGGTTCTTGGAGGCTGTA-TTCCAG---------------AATG---------TTCTACATGAATCCAATTTGTTTTCTGCATTCTAGAGTGCTGGACTGTTGATAA-TTACTTTTATG-----------CTAACTTTTCACTGAAAGAT-ATATGTGGTATTCCTTTGCATAC-AGTACAAATAAATTATTTGACTATAGAAGTTAATTATTAATTTAGTCTA---------TCTTCTTT-----GAG----GAGACTGTTATCTTTTCTTGAGAGGGATCAACTTTTACC-----TCTACAGTATTACAAATTGTTTCTCTTGGATGCATCTGGTATATTGAAGTACTCAATTTGCTTT---ATGATATGCTTTTAGAAGTTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 356604 519 - 1393929 TTTGCTGTGCCTGGGCACatttattttttataatttatactgaatttatcattt-atTTTCCAAATAT-TTTTTCAAAAGACAGGCAGAG--ATAGAGTAAGTTTCTAAAAACCTCTTTACTTGAAGCATTATTTCACTAATCCACCCTAGCAAACATCAAATTTGGGAGCTTTACAAGAATCATC------AGTTATGTATTACAAGTGGTTCTCGGGGGCTGTAGTTCCAG---------------AATG---------TTCTACATGAATCCAATATGTTTTCTGCATTCTAGAGTGCTGGACTCTTGATAA-TTACTTTTATG-----------CTAACTTTTCACCAAAAGAT-ATGCGTGATATTCCTTTGCATAT-AGTATGAATAAATTATTTGACTATAGGAGTTAATCATTAATTTAGTCTA---------TCTGTTTT-----GAG----GAGACTGTTATCTTTTCTTGAGAGGGATCAGCTTTTGCC-----TCTACAGTATTATAAATTTTTTCTCTTGGATGCATCTGGTATATTGAAGTACTCAATTTGCTTT---ATGATATGCTTTTAGAAGTTG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1434050 517 - 15889662 TTTGCTGTGCCTGGGCACATTTATTTTTTATAATTTATACTCAGTTTATCATTT-ATTTTCCAAATAT-TTTTTCAAAAGACAGGCAGAG--ATAGAATAAGTTCCTAAAAACCTGTTTACTTGAAGCATTATTTCACTAATCCACCCTAGCAAACATCAAATTTGGGAGCTTTACAAGAATCATA------AGTTATATATTACAAGTAGTTCTCGGGGGCTGTAGTTCCAG---------------AATG---------TTCTACATGAATCCAATTTGTTTTCTGCATTCTAGAGTGCTGGACTGTTGATAA-TTACTTTTATG-----------CTAACTTTTCACCAAAAGAT-ATGTGTGGTATTCCTTTGCAAAT-AGTATGAATAAATTATTTGACTATAGAAGTTAATTATTAATTTAGTCTA---------TCTGCTTT-----GAG----GAGAC--TTATCTTTTCTTGAGAGGGATCAACTTTTGCC-----TCTACAGTATTACAAATTGTTTCTCTTGGATGCATCTGGTATATTGAAGTACTCAATTTGCTTT---ATGATATGCTTTTAGAAGTTG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84837655 524 + 108143057 TTTGCTGTGGCTGGGCACATTTATTTTTGATAATTTATACTGAAT---TTATTT-CTTTTCTAAGTAT-TTTTTCAAAAGAGAGGCAGAG--ATACAAAGAGTTTCTGAAAACGTGATTACTTTAAGAATTATTTCATTAATGAACACTAGCAAACATCAAATTTGGGGGCTTTAGAAGAATCATC------CATGATGTATTACAAGTGGTTCTCAGG--CTGTAGCTCCAG---------------TGTG---------TTCTACATGAATCCAG-CTGTTTTCTGCATCCTAGAGTACTGTACTGTTGATAA-----TTTTATG-----------CTAACTTCGCACCAAACAAT-ATGTGTAGTGTTCCTTTGTATGT-ATAACAAATGGATTATTTGATTGTAGGAGTTAGTTAGCAGTTCAGTCTAAC----TGCTTTGCTTTAAGAACAG----GGAACCATTATCTTTTCTTAGGAGAGATCAGCTTTTGCCCCTAGTCTATAGTGTTACAAATTGTTTCTCTTAGAGATATCAGGTATATCAAAGTACTCAATTTATGTT---ATGATGTGCTTTTAGAACTTC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 607714 523 - 10520994 TTTGCTGTGGCTGAGCACATCTATTTTTGATAATTTATACTGAATTTATTATTT-CTTTTCTAAGTAT-TTTTCCAAAAGAAAGGCAGAG--ATACAATGAGTTTCTGAAAATCTGATTACTTTAAGAATT-----GTTAATGAACGCTAGCAAACGTCAAATTTGAGGGCTTTACAAGAATCATA------AATAATATATTACAAGTGGTTCTTAGG--C----GTTCTAG---------------CATG---------TTCTACATGAATCTAGTCTGTTTTCTGCATCCTAGAGTGCTGAACTGTTGATAA-TTAGTTTTGTG-----------CTAACTTCACACCAAACAAT-ATATGTGGTGTTTCTCTGTATGC-AGTACAAATGGATCATTTGATTGTAGGAGTTAGTTAGCAGTTCAGTCTA-------GCTTTGCTTTAAGAAGGG----GGAACCATTATCCTCTCTTAGGAGGGATCAGCTTTTGCCCTTAGTCTATAGTGTTACAAATTGTTTCTCTTAGAGATACCTGGTATATGAAAGTACTCAATTTATATTATGATGATGTGCTTTAAGGACTTG i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1308063 504 - 29863360 ------------GTGCACATTTATTTT-----ATTAATACTGAACGTGTTATTT-CTTTTCTAAGTAT-TATTCCAGAAGAGAGGCAGAG--ATAGAATGAGTTTCTGAACACCTGGTTACCTTAAGAAATATTTCACTAACAAATACTAGCAAACAGCATATCTATAGGCTTTATATGAATCTTCAATAATAATAATATGTTACAAATTGTTCTTAGG--CTGTAGTTCCAG---------------CATG---------TTCTACCTGAATGCAGTCTGCTTTCTGCTTCCTACAGTGC--------TGGTAA-CTGGTTTTATG-----------CTAACTTTGCATCAGAAAATAATGTGTGCTCTTCCTTTGCGTAT-AGTACAAACAAACTACTTCTTTATAGG----AGTTAGCAGTTCAGTCTAACTAATTGCTTTGCTTTAAGAAGGG----GGAATCATTA-----TCTTGGAAGAGATCAGTTTTTG-----AAGGGATAGTGTTATAAATTGTTTCTCTTAGAGTTACTTGGTATATCAAAGTACTCAATTTATACT---ATGATGTGCTTTTAGAACTCG i otoGar3.GL873536 C 0 I 851 s mm10.chr13 76465086 447 + 120421639 TTTACTGCAGCCAGATACATCTGTTTTTGATAGTTTAT----------TATTTT-CTTCTCCAAGCATACTTTTCAAAAG------AGAG--GGAAAATGGATTTCAGAAAATCTGGTTGC-TGGGGAATTACTCTGCTAATGAAAACTC-TAAGTTTCAGGTTTGGGAGCTTTACAAAAATTGTT------AATTATATACGGCAAGTGGTTCTCTGG--CTACAGTTCTAG---------------CAT----------CTCTACATAAGTGCAATCTGTTTTCTGCTTCCCAGATTCTTCGG-TGTAGATTA---ATTTTCATG-----------CTGACTTTGCATTAA--GAT-ATATGTGAGTGTCCTTTGCATGT-GATGCACGTGGGTTGTTTGAATACAGAATGTAGT----AGTTCAGACCA---------TTTGCTTT-----GAGACCAGGGACTACTATCTCCTCTTG------------------------CCAATAG----------------------------CTGGTCTAGTACTGAACCCAACTGGTACT---GTGATGTGTGTTTACAGCTTG i mm10.chr13 C 0 C 0 s canFam3.chr3 14325261 521 + 91889043 TTTTCTGTGGCTAGGCATATTTATTTTTGATAGTTCATACTGAATTTATTTTTTGGTTTTCCAAATAA-TTTTTTCAAA-------AGAG--AGAGAATGAATTTCTGAAAACTTGATTCCTTGAAATTTTTTTTCACTAGTGAACACTAACAAGCATCAAATTTGGTGGCTTTATAAGAATCATC------AATTGTATATTATAAGTGCTTCTCAGG--TTGTAACTCTAG---------------CATT---------TTATACATAAATCTGATCTA-TCTCTGCCTCCTAGGGGGCTGAGGTGCTGATAG-TTAGTTTTATGCTATCAGAGTTCTAACTTTGCATCAAACTAT-ATGTGCGGTGTTCCTCTGCATGC-AGTACAAGTGGGTTATTTGTTTGTAGGAGTTAG----CAATTC-TTCCC---------TTTGCTGGAAGAAGAG----GGGATGGTCATCTTCTCTTGGGAGGGGTCAGCTTTCACCTGTAGTCTCTATTATTATAA---TTTTTCTTTAGAGATAACTGATATATTGA-GTACCCA-TTTGTATT---ACAGTGTGCTTGTAGAACTTG i canFam3.chr3 I 215 C 0 s dasNov3.JH570378 10401299 511 + 11655695 TTCCCTTTGGCATGGCACATTTATTTTTAATAG----TACTGAACTCATTGTTT-CTTTTCCAACTAT-TTTTC-----AAGAGGCAGAG--AGAGAACAAGTTTCTGAAAGCCTGATTACTTTAC-AAGTATTTCATTAGTAAACACTAGTAAGCATCATATTTGGGGGCTTTACAGAAAACAAC------CTTTCTGTATTACAAGTGG---------GCTTTGGTTATAT---------------CACG---------TTGTATATGAAGCCAATCTGCTGTGTCTGTCTTAGAATGCTGAACTACTGATAGTTTATGCTTATA-----ACAGTTCTAACTTTGCATTAAAAGAT-ATATATAGTGTTCCTCTGTTTATAAGCACAAATGACTTATTTGATTAGAGGAGTTAG----AAGTTCAGTCTG---------TCTGCTATGAAAAGAG----GGATCAGTTATCTTCTTTTGCATAGAATAAGATTTGGTCTCTAGTCGATACTATTCTAAATCTTTTCTCTTAGAGATATTTGGTGTATTGCAGTTC---ATATTTATT---ATGGCATTCCTTTAGAATTTT i dasNov3.JH570378 C 0 C 0 a score=1013642.000000 s hg38.chr5_GL383530v1_alt 54244 71 + 101241 -AAAGAATTTTATTGGAGAGTTCTAGG-TTTTTTATTAAAATTAAAATG-----TAACTTACTAGGCATAAATTACTG s panTro5.chr5 20287130 71 + 181907262 -AAAGAATTTTATTGGAGAGTTCTAGG-TTTTTTATTAAAATTAAAATG-----TAACTTACTAGGCATAAATTACTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20299428 71 + 183735486 -AAAGAATTTTATTGGAGAGTTCTAGG-TTTTTTATTAAAATTAAAATG-----TAACTTACTAGGCATAAATTACTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4786216 69 - 13748885 -AAAGAATTTTATTGGAGAGTTCTAGG-TTTTTTATTAAAATTAAAATG-----TAAC--ACTAGGCATAAATTACTG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53823251 72 - 163208435 -AAAGAATTTTATTGGAGAGTTCTAGGTTTTTTTATTAAAATTAAAATG-----TAACTTACTAGGCATAAATTACTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87846065 76 - 180051392 -AAAGAATTTTATTGGAGAGTTCTAGG-TTTTTTATTAAAATTAAAATGTATTATAAGTTGTTAGGCATAAATTACTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87950487 76 - 181584905 -AAAGAATTTTATTGGAGAGTTCTAGG-TTTTTTATTAAAATTAAAATGTATTGTAAGTTGTTAGGCATAAATTACTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1173282 76 - 8785636 -AAAGAATTTTATTGGAGAGTTCTAGG-TTTTTTATTAAAATTAAAATGTATTGTAAGTTGTTAGGCATAAATTACTG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1641624 76 + 27333823 -AAAGAATTTTATTGGAGAGTTCTAGG-TTTTTAATTAAAATTAAAATGTATTGTAAGTTGTTAGGCATAAATTACTG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1911844 76 - 91010382 -AAAGAATTTTATTGGAGAGTTCTAGG-TTTTTTATTAAAATTAAAATGTATTGTAACTTATTAGGCATAAATTACTG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2030956 76 + 5179401 -AAAGAATTTTATTGGAGAGTTCTAGG-TTTTTTATTAAAATTAAAATGTATTGTAAGTTGTTAGGCATAAATTACTG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7728976 76 - 21726897 -AAAGAATTTTATTGGAGAGTTCTAGG-TTTTTTATTAAAATTAAAATGTATTGTAACTTATTAGACATAAATTACTG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112546132 71 + 204313951 -AAAGAATTTTATGGGAGAGTTCCAGG-TTTTTTATTCAAATTAAGATG-----TAACTTACTTGGTATAAATTCCTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44994388 71 + 71252344 -AAAGAATATTATGGGAGAGTTCCAGG-TTTTTTATTCAAATTAAAATA-----TAACTTACTTGGTATAAATTACTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 357123 71 - 1393929 -AAAGAATTTTATGGGAGAGTTCCAGG-TTTTTTATTCAAATTAAAATG-----TAACCTACTTGGTATAAATTACTG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1434567 62 - 15889662 -AAAGAATTTTATGGGAGAGTTCCAGG-TTTTTTATTCAAATT--------------CTTACTTAGTATAAATTACTG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84838179 74 + 108143057 -AAAGAATTTTATTGGAGAGTTCCAGG-GTTTTGATTAAAATTAAAATTTGTTGTAATTTGCTAGGTGTAAATTAT-- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 608237 74 - 10520994 -AAAGAATTTTATTGGAGAGTTTCAGG-GTTTTGATTAAAATTAAAATTTATTGTAATTTACTAGGTGCAAATTAT-- i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1309418 76 - 29863360 -AAAGAATTTTATTGGAGAGTTTTAGA-GTTTTGattaaaattaaaatttattataatttaCTAGGTATAAATTCTTG i otoGar3.GL873536 I 851 C 0 s mm10.chr13 76465533 76 + 120421639 -AAAGGATTTGAGTGGAGAGCTTGAGA-ACTTTGACTCAAGTTAAAATTTGCTGTGATTTTCTCAGCACAAATAATCA i mm10.chr13 C 0 C 0 s canFam3.chr3 14325782 66 + 91889043 -AAATAACTTTACTGGAGAGTTTTAGG-atttttattaaaattaaaatt----------tattatGCATAGATTATTG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 10401810 65 + 11655695 AAGAGAACTTTATTGGagaatttcaga--ttttgataaaaataagaacctattgta-----------ataaatttctg i dasNov3.JH570378 C 0 n 0 a score=3100161.000000 s hg38.chr5_GL383530v1_alt 54315 241 + 101241 TGTGATAATTATTTCCTCTAGAAGTAATAT--AAAATGAAATATTCCCAGTGTTAGCTCATTATTTACACTCTGGTTTGTGGTTTTTAT-TTTCTTTAGTTTTATTTATTGTTCTGAAATAATCCTAGAAAAATTAA---TGTGCTTTGTTGAGAG-ATTAATTAAACACCCAATAAAATTTA--CTTTTATATTAGAGAACAGATATTCTAGTTGTTTATTTAGTATTGAGATAAATTGATGAATGATA s panTro5.chr5 20287201 237 + 181907262 TGTGATAATTATTTCCTCTAGAAGTAATAT--AAAATGAAATATTCCCAGTGTTAGCTCATTATTTACACTCTGGTTTGTGGTTTTAAT-TTTCTTTAGTTTTATTTATTATTCTGAAATAATCCTAGAAAAATTAA---TGTGCTTTGTTGAGAG-----ATTAAACACCCAATAAAATTTA--CTTTTATATTAGAGAGCAGATATTCTAGTTGTTTATTTAGTATTGAGATAAATTGATGAATGATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20299499 237 + 183735486 TGTGATAATTATTTCCTCTAGAAGTAATAT--AAAATGAAATATTCCCAGTGTTAGCTCATTATTTACACTCTGGTTTGTGGTTTTAAT-TTTCTTTAGTTTTATTTATTATTCTGAAATAATCCTAGAAAAATTAA---TGTGCTTTGTTGAGAG-----ATTAAACACCCAATAAAATTTA--CTTTTATATTAGAGAACAGATATTCTAGTTGTTTATTTAGTATTGAGATAAATTGATGAATGATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4786285 241 - 13748885 TGTGATAATTATTTCCTCTAGAAGTAATAT--AAAATGAAATATTCCCAGTGTTAGCTCATTATTTACACTCTGGTTTGTGGTTTTTAT-TTTCTTTAGTTTTATTTATTGTTCTGAAATAATCCTAGAAAAATTAA---TGTGCTTTGTTGAAAG-ATTAATTAAACACCCAATAAAATTTA--CTTTTATATTAGAGAACAGATATTCTAGTTGTTTTTTTAGTATTGAGATAACTTGATGAATGATA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53823323 243 - 163208435 TGTGATAATTATTTCCTCTAGAAGTAATATACAACATGAAATATTCCCAGTGTTAGCTCATTATTTACACTCTGGTTTGTGGTTTTTAT-TTTCTTTAGTTTTATTTATTGTTCTTAAATAATCCTAGAAAAATTAA---TGTACTTTGTTGAGAG-ATTAATTAAACACCCAATAAAATTTA--CTTTTATATTAGAGAACAGATATTCTAGTTGTTTATTTAGTATTGAGATAAATTGATGAATGATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87846141 240 - 180051392 TGTGATAATTATTTCCTCTGTAAGTAATATACAAAATGAAATATTCCCAGTGTTAGCTCATTATTTACACTCTGGTTTGTGGTTTTTAT-TTTCTTTAGTTTTATTTATTCTTCTGAAATAATCCTAGAGAAATTAA---TGTGCTTTGTTGAGAG----AATTACACACTCAATAAAATTTA--CTTTTATGTTAGAGAATAGATATTCTAGTTGTTTATTCAGTGTTGAGATAAATTGATGAATGATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87950563 240 - 181584905 TGTGATAATTATTTCCTCTGTAAGTAATATACAAAATGAAATATTCCCAGTGTTAGCTCATTATTTACACTCTGGTTTGTGGTTTTTAT-TTTCTTTAGTTTTATTTATTCTTCTGAAATAATCCTAGAGAAATTAA---TGTGCTTTGTTGAGAG----AATTACACACTCAATAAAATTTA--CTTTTATGTTAGAGAATAGATATTCTAGTTGTTTATTCAGTGTTGAGATAAATTGATGAATGATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1173358 240 - 8785636 TGTGATAATTATTTCCTCCGTAAGTAATATACAAAATGAAATATTCCCAGTGTTAGCTCATTATTTACACTCTGGTTTGTGGTTTTTAT-TTTCTTTAGTATTATTTATTCTTCTGAAATAATCCTAGAGAAATTAA---TGTGCTTTGTTGAGAG----AATTACACACTCAATAAAATTTA--CTTTTATGTTAGAGAATAGATATTCTAGTTGTTTATTCAGTGTTGAGATAAATTGATGAATGATA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1641700 240 + 27333823 TGTGATAATTATTTCCTCTGTAAGTAATATACAAAATGAAATATTCCCAGTGTTAGCTCATTATTTACACTCTGGTTTGTGGTTTTTAT-TTTCTTTAGTTTTATTTATTCTTCTGAAATAATCCTAGAGAAATTAA---TGTGCTTTGTTGAGAG----AATTACACACCCAATAAAATTTA--CTTTTATGTTAGAGAATAGATATTCTAGTTGTTTATTCAGTGTTGAGATAAATTGATGAATGATA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1911920 240 - 91010382 TGTGATAATTATTTCCTCTGTAAGTAATATACAAAATGAAATACTCCCAGTGTTAGCTCATTATTTACACTCTGGTTTGTGGTTTTTAT-TTTCTTTAGTTTTATTTATTGTTCTGAAATAATCCTAGAGAAATTAA---TGTGCTTTGTTGAGAG----AATTACACACCCAATAAAATTTA--CTTTTATGTTAGAGAACAGATATTCTAGTTGTTTATTTAGTGTTGAGATAAATTGATGAATGATA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2031032 240 + 5179401 TGTGATAATTATTTCCTCTGTAAGTAATATACAAAATGAAATATTCCCAGTGTTAGCTCATTATTTACACTCTGGTTTGTGGTTTTTAT-TTTCTTTAGTTTTATTTATTCTTCTGAAATAATCCTAGAGAAATTAA---TGTGCTTTGTTGAGAG----AATTACACACCCAATAAAATTTA--CTTTTATGTTAGAGAATAGATATTCTAGTTGTTTATTCAGTGTTGAGATAAATTGATGAATGATA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729052 240 - 21726897 TGTGATAATTATTTCCTCTGTAAGTAATATACAAAATGAAATATTCCCAATGTTAGCTCATTATTTACACTCTGGTTTGTGGTTTTTAT-TTTCTTTAGTTTTATTTATTGTTCTGAAATAATCCTAGAGAAATTAA---TGTGCTTTGTTGAGAG----AATTACACACCCAATAAAATTTA--CTTTTATGTTAGAGAACAGATATTCTAGTTGTTTATTTAGTGTTGAGATAAATTGATGAATGATA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112546203 201 + 204313951 CATGATAA------------------------------------------TGTTAGCTCAGTATTTACACTCTGATTTATGGTTTTTAT-TTCCCTTAGTTTTATTTAGTGTTCTGAAATAATCCTAGAAAAATTAA---TGTGCTTCTTTGAGAGAATTAA-AAAGCACCCAATAAAATTTA--CTTTTATTTTAGAGTACAGATATTCGAGTTGTTTGTTTTGCATTGAGAGAAATTGATGAATGGTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44994459 200 + 71252344 TGTGATAA------------------------------------------TGTTAGCTCATTATTT--ACTCTGATTTATGGTTTTTAT-TTCTTTTAGTTTTATTTAGTGTTCTGAAATAATCATAGAAAAATTGA---TGTGCTTTGTTGAGAGAATTAATTAAGCACCCAATAACATTTA--CTTTTATTTTAGAGAACAGATATTCTAGTTGTTTATTTTGCATTGAGAGAAATTGATGAATGATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 357194 202 - 1393929 TGTGATAA------------------------------------------TGTTAGCTCATTATTTACACTCTGATTTATGGTTTTTAT-TTCGTTTAGTTTTATTTAGTGTTCTGAAATAACCCTAGAAAAATTAA---TGTGCTTTGTTGAGAGAATTAATTAAGCACCCAATAAAAGTTA--CTTTTATTTTAGAGAACAGATATTCTAGTTGTTTATTTTGCATTGAGAGAAATTGATGAATGATA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1434629 202 - 15889662 TGTGATAA------------------------------------------TATTAGCTCATTATTTACACTCTGATTTATGGTTTTTAT-TTCCTTTAGTTTTATTTAGTGTTCTGAAATAATCCTAGAAAAATTAA---TGTGCTTTGTTGCGAGAATTAATTAAGCATCCAATAAAATTTA--CTTTTATTTTAGAGAACAGATATTCTAGTTGTTTATTTTGCATTGAGAGAAATTGATGAATGGTA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84838253 242 + 108143057 TATCATAATTATTTCCTTTAGAAGTAATATGTGAAATGAAATATTACTAATGTTAGCTCATTATTAACACTCTGTTTTATGGTTTTCAT-TTTCTTTAGTTTTATTTAGTGTTCTGAAATAATCCTGAAAGA--TAC---TGTGTTTTGTTAAAAGAATTAATTAAGCACCCCAAAAAATCTA--TTTTTATGTTAGGGAACAGATATTCTAGTTATCTACTTACCATTGAGAAAAATTTATGAATGATA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 608311 242 - 10520994 TGTGATAATTATTTCCTTTAGAAGTAATACATGAAATGAAATATTACTAATGTTAGCTCATTATTTACACTCTGTTTTATGGTTTTTAT-TTTTTTTAGTTTTATTTAGTGTTCTGAAATAATCCTGAAAGA--TAC---TGTGCTTTGTTAAAAGAATTAGTTAAGCACCCAAGAAAATCTA--TTTTTATGTTAGAGAACAGATATTCTAGTTATCTATGTACCATTGAGGGAAATTTATGAATGATA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1309494 228 - 29863360 TGTGATGATTATTTTCCTTTCAAGTAATATATAAAATGAAATATTACTAATGTTATTTCACTG------------TTCATGGTTTTGAT-TTTCTTTAGTTTTATTCAGTGTTCTAAAGTAATCCTGGAAAA--TACTAATGTGCTTTTTTGAAAGAA----TTAAGCACCCAAGAAAATCTA--TTTTTATGGTAGAGAACAGGTATTATAATTATCTACTTAGCATTGAGAGAAATTTATG-ATGGTA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76465609 234 + 120421639 TAAGATAATGACCTTCTTTAG-GGTGGTACATAAGGCATAGT--------CAATAGCTCTCTACTTATACTATGTGTTTTTTTTTAAATGTGTTTTTTGTTTTAGTCAGTGTTCTAAATGAGCCATGAAAACATTAA---TGTTCTTTGTTGAGAG----ATTTAAGAATCTAAGAAGATTTATTTTTTTGTATTAGAGAACAGAGATTCTAGTTATATAGTTAACATTAAGATAAATTTATGAACAATA i mm10.chr13 C 0 C 0 s canFam3.chr3 14325848 241 + 91889043 TGTGATGATTATGTCTCTTAGAAGTAATACATGAAAGAGAATATTACCTAAGTTAGCTCTTTACTT--AGTTTCATTTGTGGTTTTTAT-TTTCTTTTATTTTGTTGAGTGTTCTGAAAGAGACCTTAAAAAATTAA---TGTGATT-GTTGAAAGAATTAATTAAGCACCCAAGAAAATCTA--TTTTTATATTAGAGAACAGACACTCTAGTTATGTATTTTGCATTCAGAGAAATTTATGAATGATA i canFam3.chr3 C 0 C 0 e dasNov3.JH570378 10401875 0 + 11655695 I a score=2179809.000000 s hg38.chr5_GL383530v1_alt 54556 141 + 101241 AGGTTAAATATGCTTGGA-TT--------T-TTTTGAATAAGAAAATAAGATTAGTATTCCACA----------CAAAGCCTTAACATTTATT---------ACACA---------TAGAGAAAATT-----ATTGTATAACAATGTGGTTTGTTATTTTATGGATCGTATGTTATTTGG-----------------------AAAG- s panTro5.chr5 20287438 141 + 181907262 AGGTTAAATATGCTTGGA-TT--------T-TTTTGAATAAGAAAGTAGGATTAGTATTCCACA----------CAAAGCCTTAACATTTATT---------ACACA---------TAGAGAAAATT-----ATTGTATAACAATGTGGTTTGTTATTTTATGGATCATATGTTATTTGG-----------------------AAAG- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20299736 141 + 183735486 AGGTTAAATATGCTTGGA-TT--------T-TTTTGAATAAGAAAGTAAGATTAGTATTCCACA----------CAAAGCCTTAACATTTATT---------ACACA---------TAGAGAAAATT-----ATTGTATAACAATGTGGTTTGTTATTTTATGGATCATATGTTATTTGG-----------------------AAAG- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4786526 142 - 13748885 AGGTTAAATATGCTTGGATTT--------T-TTTTGAATAAGAAAATAAGATTAGTATTCCACA----------CAAAGCCTTAACATTTATT---------ACACA---------TAGAGAAAATT-----ATTGTATAACAATGTGGTTTGTTATTTTATGGATCATATGTTATTTGG-----------------------AAAG- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53823566 141 - 163208435 AGGTTAAATATGCTTGGA-TT--------T-TTTTGAATAAGAAAATAAGATTAGTATTCCACA----------CAAAGCCTTAACATTTATT---------ACACA---------TAGAGAAAATT-----ATTGTATAACAATGTGGTTTGTTATTTTATGGATCATATGTTATTTGG-----------------------AAAG- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87846381 141 - 180051392 AGGTTAAATATGCTTGGA-TT--------T-TTTTGAATAAGAAAATAAGATTAGTATTCCACA----------CAAAGCCTTAAAATTTATT---------ACACA---------TAGAGAAAATT-----ATTGTATAACAATGTCGTTTGCTATTTTATGGATTATATGTTATTTGG-----------------------AAAG- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87950803 141 - 181584905 AGGTTAAATATGCTTGGA-TT--------T-TTTTGAATAAGAAAATAAGATTAGTATTCCACA----------CAAAGCCTTAAAATTTATT---------ACACA---------TAGAGAAAATT-----ATTGTATAACAATGTCGTTTGCTATTTTATGGATTATATGTTATTTGG-----------------------AAAG- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1173598 141 - 8785636 AGGTTAAATATGCTTGGA-TT--------T-TTTTGAATAAGAAAATAAGATTAGTATTCCACA----------CAAAGCCTTAAAATTTATT---------ACACA---------TAGAGAAAATT-----ATTGTATAACAATGTCGTTTGCTATTTTATGGATTATATGTTATTTGG-----------------------AAAG- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1641940 141 + 27333823 AGGTTAAATATGCTTGGA-TT--------T-TTTTGAATAAGAAAATAAGATTAGTATTCCACA----------CAAAGCCTTAAAATTTATT---------ATACA---------TAGAGAAAATT-----ATTGTATAACAATGTCGTTTGCTATTTTATGGATTATATGTTATTTGG-----------------------AAAG- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1912160 141 - 91010382 AGGTTAAATATGCTTGGA-TT--------T-TTTTGAATAAGAAAATAAGATTAGTATTCCACA----------CAAAGCCTTAAAATTTATT---------ACACA---------TAGAGAAAATT-----ATTGTATAACAATGTGGTTTGCTGTTTTACGGATTATATGTTATTTGG-----------------------AAAG- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2031272 141 + 5179401 AGGTTAAATATCCTTGGA-TT--------T-TTTTGAATAAGAAAATAAGATTAGTATTCCACA----------CAAAGCCTTAAAATTTATT---------ACACA---------TAGAGAAAATT-----ATTGTATAACAATGTCGTTTGCTATTTTATGGATTATATGTTATTTGG-----------------------AAAG- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729292 141 - 21726897 AGGTTAAATATGCTTGGA-TT--------T-TTTTGAATAAGGAAATAAGATTAGTATTCCACA----------CAAAGCCTTAAAATTTATT---------ACACA---------TAGAGAAAATT-----ATTGTATAACAATGTGATTTGCTATTTTATGGATTATATGTTATTTGG-----------------------AAAG- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112546404 141 + 204313951 AGGTGAAATATGCTTGGA-TT--------T-TTTTGAATAAGAAAATAAGATTAGTATTCCTCA----------CAAAGCCTTAACATTGATC---------ACACA---------TAAAGAAAATT-----ATTGTATAACAATGTGGTTTGTTATTTTATGGATTATATGTTATTTGG-----------------------AAAG- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44994659 164 + 71252344 AGGTGAAATATGCTTGGA-TT--------T-TCTTGAATAAGAAAATAAGATTAGTATTCTTCA----------CAAAGTCTTAACATTTATC---------ACATA---------TAAAGAAAATT-----ATTGTATAACAATGTGGTTTGTTATTTTTTGGATTATATGTTATTTGGTCCGTTTTGGATTATATGTTATTTGGA- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 357396 141 - 1393929 AGGTGAAATATGCTTGGA-TT--------T-TTTTGAATAAGAAAATAAGATTAGTATTCCGCA----------CAAAGCCTTGACATTTATC---------ACACA---------TAAAGAAAATT-----ATTGTATAACAATGTGGTTTGTTATTTTTTGGATTATATGTTATTTGG-----------------------AAAG- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1434831 141 - 15889662 AGGTGAAATATGCTTGGA-TT--------T-TTTTGAATAAGAAAATAAGATTAGTATTCCTCA----------CAAAGCCTTAACATTTAGC---------ACACG---------TAAAGAAAATT-----ATTATACAACAATGTGGTTTGTTATTTTATGGATTATATGTTATTTGG-----------------------AAAG- i aotNan1.NW_018506370v1 C 0 I 189 s micMur3.chr12 84838495 142 + 108143057 ATGTTAGGTATGTTTGTATTT--------T-TTTTGAATAAGAAAATAAGATTAGTTTTCCACA----------TGAAGCCCTAACATTTATT---------ATACA---------TAGAGAAAATT-----ATTGTATAACAAGGTGGTTTGTTATTTTATGGATTAGATGTTATTTGG-----------------------AAAG- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 608553 141 - 10520994 AGGTTAGGTATGTTTGGA-TT--------T-TTTTGAATAAGAAAATAGGATTAGTTTTCCACA----------TGAAGCCCTAAAATTTATT---------ATACA---------TAGAGAAAATT-----ATTGTATAACAATGTGGTTTGTTCTTTTATGGATCAGATGTTATTTGG-----------------------AAAG- i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1309722 138 - 29863360 AGTTTAGGTATGTTTGGA-TT--------C-TTTTTAATAAGGAAAAAAGATTAGTTTTTCACA----------TAAAGCTCTAAAATTTATT---------ATACA---------TAGAGAAAATT-----A---TATAATAATATGGTTTGTTATTTTATGACTCAGATGTTATTTAA-----------------------AAAG- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76465843 180 + 120421639 AGGATCAGTAAGTTTGAC-TTTTTTCttct-tttttaatatttttattaggt--attttcctcatttacatttccaatgctatAAGTTTGACTTTTAATTGAATATAATAATTCTCTAAATGAAACCTTTAAATTATATAACATTGTAGCTTGCTACTTTATGGACTATGTATTATCTGG-----------------------AAAG- i mm10.chr13 C 0 C 0 s canFam3.chr3 14326089 134 + 91889043 AGGTTAGGCATGTTTAAA-TT--------TCTTTTTAATAGGAAAATAGGTTTGATTTTCCTTG----------TGAAGACTTAAAAATTTTT---------ATGCA---------TAAA------------ATTATGTAACAATGTGGTTTGATACTTTAAGAAAT-CATGTTATTTGG-----------------------AAAG- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1256375 141 - 11655695 aAGTTAAGTATGTTTGGAAAT--------T-TTTTAAATAAGAAAGTGAGATTAATTTTCCATA----------TGAAGTGTTAGAAATTATT---------ATACA---------CTAA-AAACTA-----ATTTTTTAACAATGTGGTTTGTTG-TTTATGGATCATGTATTATTTTG-----------------------GAAAA i dasNov3.JH570378 I 12429 C 0 a score=1380219.000000 s hg38.chr5_GL383530v1_alt 54697 117 + 101241 TAGACAGAT-------------------------------------------------------------AGATGAATAAC--ATTATTTCTGTGCCAAAAATA------CTAAAACTAAAGATAATCACAAACGAATTAACTCTATGTAATTCAAAGGGAATT--GCTGTGA----AATTTACAATAAATA s panTro5.chr5 20287579 117 + 181907262 TAGACAGAT-------------------------------------------------------------AGATGAATAAC--ATTATTTCTGTGTCAAAAATA------CTAAAACTAAAGATAATCACAAACGAATTAACTCTATGTAATTCAAAGGAAATT--GCTGTGA----AATTTACAATAAATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20299877 117 + 183735486 TAGACAGAT-------------------------------------------------------------AGATGAATAAC--ATTATTTCTGTGTCAAAAATA------CTAAAACTAAAGATAATCACAAACGAATTAACTCTATGTAATTCAAAGGAAATT--GCTGTGA----AATTTACAATAAATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4786668 117 - 13748885 TAGACAGAT-------------------------------------------------------------AGATGAATAAC--ATTATTTCTGTGTCAAAAATA------CTAAAACTAAAGATAATCACAAACGAATTAACTCTATGTAATTCAAAGGGAATT--GCTGTGA----AATTTACAATAAATA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53823707 117 - 163208435 TAGACAGAT-------------------------------------------------------------AGATGAATAGC--ATTATTTCTGTGTCAAAAATA------CTAAAACTAAAGATAATCACAAACGAATTAACTCTATGTAATTCAGAGGGAATT--GCTGTGA----AATTTACAGTACATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87846522 117 - 180051392 TGGACAGAT-------------------------------------------------------------AGATGAATAAC--ATTATTTCTGTGTCAAAAATA------CTAACACTAAAGATATTCACAAACGAATTAACTCTATGTAATTCAAAGGGAATT--GCTGTGA----AATTTACAATAGATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87950944 117 - 181584905 TGGACAGAT-------------------------------------------------------------AGATGAATAAC--ATTATTTCTGTGTCAAAAATA------CTAACACTAAAGATATTCACAAACGAATTAACTCTATGTAATTCAAAGGGAATT--GCTGTGA----AATTTACAATAGATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1173739 117 - 8785636 TGGACAGAT-------------------------------------------------------------AGATGAATAAC--ATTATTTCTGTGTCAAAAATA------CTAACACTAAAGATATTCACAAATGAATTAACTCTATGTAATTCAAAGGGAATT--GCTGTGA----AATTTACAATAGATA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642081 117 + 27333823 TGGACAGAT-------------------------------------------------------------AGATGAATAAC--ATTATTTCTGTGTCAAAAATA------CTAACACTAAAGATATTCACAAACGAATTAACTCTATGTAATTCAAAGGGAATT--GCTGTGA----AATTTACAATAGATA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1912301 116 - 91010382 TGGACAGAT-------------------------------------------------------------AGATGAATAAC--ATTATTTCTATGTCAAAAATA------CTAA-ACTAAAGATATTTGCAAACGAATTAACTCTATGTAATTCAAAGGGAATT--GCTGTGA----AATTTACAATAGATA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2031413 117 + 5179401 TGGACAGAT-------------------------------------------------------------AGAAGAATAAC--ATTATTTCTGTGTCAAAAATA------CTAACACTAAAGATATTCACAAACGAATTAACTCTATGTAATTCAAAGGGAATT--GCTGTGA----AATTTACAATAGATA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729433 178 - 21726897 TGGACAGATTAACATTATGAACAATAAATTTTTTATTTTTATTAACAACAAAAATTTATTTATTTATTAACAATAAATAAC--ATTATTTCTGTGTCAAAAATA------CTAAAACTAAAGATATTCACAAACGAATTAACTCTATGTAATTCAAAGTGAATT--GCTGTGA----AATTTACAATAGATA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112546545 117 + 204313951 TGGACAGAT-------------------------------------------------------------AGATGAATAAC--ATTATTTCTGTGCCAGAAATA------CTAAAACTAAATATAACCACAAATGAATTAA-TGTATGTAATTCAAAAGGAATC-GGCCATGA----AATTCACAATAGATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44994823 118 + 71252344 TGAATAGAT-------------------------------------------------------------AGATGAATAAC--ATTATTTCTGTGTCAGAAATA------CTAAAACTAAATATAACCACAAATGAATTAACTCTATGTAATTCAAAAGGAATT-AGCCATGA----AATTCACCATAGATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 357537 118 - 1393929 TGGACAGAT-------------------------------------------------------------AGATGAATAAC--ATTATTTCTGTGTCAGAAATA------CTAAAAGTAAATATAACCACAAATGAATTAACTCTATGTAATTCAGAAGGAATC-GGCCATGA----AATTCACAATAGATT i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84838637 126 + 108143057 CGGACAAAT-------------------------------------------------------------AGATGAATGACATATTATTTATGTGTCAAAAAAACTGAAAATAAAGGTAAAGGGAACCACAAATGAATGAACTTTATGTAATTCAAAGGGAATC-TGCTGTGA----AGTTTACaatagata i micMur3.chr12 C 0 I 91 s proCoq1.NW_012147189v1 608694 126 - 10520994 TGGACAAAT-------------------------------------------------------------AGATGAATGACATATTATTTCTGTGTCAAAAACACTAAACATAAAGGTAAAGGTAACCACAAATTAATGTACTTTATGTAATTCAAAGGGAATC-TGCTGTGA----AATTTACAATGGATA i proCoq1.NW_012147189v1 C 0 I 1 s otoGar3.GL873536 1309860 120 - 29863360 TGAATCAAT-------------------------------------------------------------ATTGGAATGACATATTACTTCTGTATCAAAAATG------ATAAAAATAGAGGTAACCATAAATATATGAACTCAATGTAATTCAAAGTGATTT-TTCTGTTA----AGTTTATTATAGATA i otoGar3.GL873536 C 0 I 1 s mm10.chr13 76466023 87 + 120421639 -TGGGAAAT-------------------------------------------------------------GGATGATTTAT--GTGACATATGTG---AAAACA------CTAAAAATGAAGGTA-----------GTAGATTCCATGTGATTTAGAGGGAAAT-TTCTGTG-------------------- i mm10.chr13 C 0 C 0 s canFam3.chr3 14326223 114 + 91889043 TGGACAAAT-------------------------------------------------------------AGATAAATAAC--ATTATCTCTCTAACAAAAACA------CTTA------ACATAATCTCAAACCAATGAATT---TGTAATTCAAAGAAAAATCTGCTATGGAATTAATTTACGATAGATA i canFam3.chr3 C 0 I 3 s dasNov3.JH570378 1256516 118 - 11655695 TGGATGAAG-------------------------------------------------------------AGATGAATAAC--AGTATTACTCTGACAAAATCC------CTAAAAATAATGATAACCCCAAAATAATGCGCTCCATAAATTTGAGAAAAAATC-TGCTTTGA----AATTCACCGTAGATA i dasNov3.JH570378 C 0 C 0 e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=-3102.000000 s hg38.chr5_GL383530v1_alt 54814 3 + 101241 -CCT s panTro5.chr5 20287696 3 + 181907262 -CCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20299994 3 + 183735486 -CCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4786785 3 - 13748885 -CCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53823824 3 - 163208435 -TCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87846639 3 - 180051392 -TCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951061 3 - 181584905 -TCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1173856 3 - 8785636 -TCC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642198 3 + 27333823 -TCC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1912417 3 - 91010382 -TCC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2031530 3 + 5179401 -TCC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729611 3 - 21726897 -TCC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112546662 3 + 204313951 -TTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44994941 3 + 71252344 -TTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 357655 3 - 1393929 -TTC i cebCap1.NW_016107830v1 C 0 C 0 s proCoq1.NW_012147189v1 608821 2 - 10520994 -TC- i proCoq1.NW_012147189v1 I 1 C 0 s otoGar3.GL873536 1309981 2 - 29863360 -TC- i otoGar3.GL873536 I 1 C 0 s canFam3.chr3 14326340 2 + 91889043 -TT- i canFam3.chr3 I 3 C 0 s dasNov3.JH570378 1256634 3 - 11655695 ATC- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84838763 91 + 108143057 I e mm10.chr13 76466110 0 + 120421639 C e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=215144.000000 s hg38.chr5_GL383530v1_alt 54817 14 + 101241 TAACTTGAATTGCT s panTro5.chr5 20287699 14 + 181907262 TAACTTGAATTGCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20299997 14 + 183735486 TAACTTGAATTGCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4786788 14 - 13748885 TAACTTGAATTGCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53823827 14 - 163208435 TAACTGGAATTGCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87846642 14 - 180051392 TAACTTGAATTGCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951064 14 - 181584905 TAACTTGAATTGCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1173859 14 - 8785636 TAACTTGAATTGCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642201 14 + 27333823 TAACTTGAATTGCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1912420 14 - 91010382 TAACTTGAATTGCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2031533 14 + 5179401 TAACTTGAATTGCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729614 14 - 21726897 TAACTTGAATTGCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112546665 14 + 204313951 TAATTTGAATTGCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44994944 14 + 71252344 TAACTTGAATTGCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 357658 14 - 1393929 TAACTTGAATTGCT i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84838854 14 + 108143057 TAACATGAATTGCT i micMur3.chr12 I 91 C 0 s proCoq1.NW_012147189v1 608823 14 - 10520994 TAACATGAATTGCT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1309983 14 - 29863360 TAACATGAATTGCT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76466110 13 + 120421639 -AACATGGTCAGCG i mm10.chr13 C 0 C 0 s canFam3.chr3 14326342 14 + 91889043 TCACATGAGTTACT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1256637 14 - 11655695 TAACATAAATTACT i dasNov3.JH570378 C 0 C 0 e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=17290.000000 s hg38.chr5_GL383530v1_alt 54831 1 + 101241 T s panTro5.chr5 20287713 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300011 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4786802 1 - 13748885 T i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53823841 1 - 163208435 T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87846656 1 - 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951078 1 - 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1173873 1 - 8785636 T i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642215 1 + 27333823 T i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1912434 1 - 91010382 T i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2031547 1 + 5179401 T i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729628 1 - 21726897 T i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112546679 1 + 204313951 T i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107830v1 357672 1 - 1393929 T i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84838868 1 + 108143057 T i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 608837 1 - 10520994 T i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1309997 1 - 29863360 T i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76466123 1 + 120421639 T i mm10.chr13 C 0 C 0 s canFam3.chr3 14326356 1 + 91889043 T i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1256651 1 - 11655695 T i dasNov3.JH570378 C 0 C 0 e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e saiBol1.JH378106 44994958 0 + 71252344 C a score=17100.000000 s hg38.chr5_GL383530v1_alt 54832 1 + 101241 C s panTro5.chr5 20287714 1 + 181907262 C i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300012 1 + 183735486 C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4786803 1 - 13748885 C i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53823842 1 - 163208435 C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87846657 1 - 180051392 C i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951079 1 - 181584905 C i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1173874 1 - 8785636 C i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642216 1 + 27333823 C i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1912435 1 - 91010382 C i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2031548 1 + 5179401 C i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729629 1 - 21726897 C i colAng1.NW_012115488v1 C 0 C 0 s cebCap1.NW_016107830v1 357673 1 - 1393929 C i cebCap1.NW_016107830v1 C 0 I 9 s micMur3.chr12 84838869 1 + 108143057 C i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 608838 1 - 10520994 C i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1309998 1 - 29863360 C i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76466124 1 + 120421639 C i mm10.chr13 C 0 C 0 s canFam3.chr3 14326357 1 + 91889043 C i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1256652 1 - 11655695 C i dasNov3.JH570378 C 0 C 0 e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e saiBol1.JH378106 44994958 0 + 71252344 C e calJac3.chr2 112546680 0 + 204313951 C a score=874260.000000 s hg38.chr5_GL383530v1_alt 54833 92 + 101241 TTTGGAGAGCAAATTT-CCCCTCCCTCTGGTTGTGAGTTATGAGTAAATATAATACAAATGGTCACTGACTC-AAA-AAAATTTATGGAATTTAT s panTro5.chr5 20287715 92 + 181907262 TTTGGAGAGCAAATTT-CCCCTCCCTCTGGTTGTGAGTTATGAGTAAATATAATTCAAATGGTCACTGACTT-AAA-AAAATTTATGGAGTTTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300013 92 + 183735486 TTTGGAGAGCAAATTT-CCCCTCCCTCTGGTTGTGAGTTATGAGTAAATATAATTCAAATGGTCACTGACTC-AAA-AAAATTTATGGAGTTTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4786804 92 - 13748885 TTTGGAGAGCAAATTT-CCCCTCCCTCTGGTTGTGAGTTATGAGTAAATATAATACAAATGGTCACTGACTC-AAA-AAAATTTATGGAATTTAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53823843 93 - 163208435 TTTGGAGAGCAAATTT-CCCCTCCTTTTGGTTGTGAGTTATGAGTAAATATAATTCAAATGGTCACTGACTCAAAA-AAAATTTATGGAATTTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87846658 92 - 180051392 TTTGGGGAACAAATTT-CCCCTCCCTCTGGTTGTGAGTTATGAGTAAATATAATTCAAATGATCACTGACTC-AAA-AAAATTTATAGAATTTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951080 92 - 181584905 TTTGGGGAACAAATTT-CCCCTCCCTCTGGTTGTGAGTTATGAGTAAATATAATTCAAATGATCACTGACTC-AAA-AAAATTTATAGAATTTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1173875 92 - 8785636 TTTGGGGAACAAATTT-CCCCTCCCTCTGGTTGTGAGTTATGAGTAAATATAATTCAAATGATCACTGACTC-AAA-AAAATTTATAGAATTTAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642217 92 + 27333823 TTTGGGGAACAAATTT-CCCCTCCCTCTGGTTGTGAGTTATGAGTAAATATAATTCAAATGATCACTGACTC-AAA-AAAATTTATAGAATTTAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1912436 92 - 91010382 TTTGGGGAGCAAATTT-CCCCTCCCTCTGGTTGTGAGTTATGAATAAATATAATTCAAATGATCACTGACTC-AAA-AAAATTTATGGAATTTAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2031549 92 + 5179401 TTTGGGGAACAAATTT-CCCCTCCCTCTGGTTGTGAGTTATGAGTAAATATAATTCAAATGATCACTGACTC-AAG-AAAATTTATAGAATTTAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729630 92 - 21726897 TTTGGGGAACAAATTT-CCCCTCCCTCTGGTTGTGAGTTATGAGTAAATATAATTCAAATGATCACTGACTC-AAA-AAAATTTATAAAATTTAT i colAng1.NW_012115488v1 C 0 C 0 s micMur3.chr12 84838870 94 + 108143057 GTTGGAGAGTAAGTTTTCCTCTCCCTCTGGTTGTGAGTTATTAGTAGAGATAACTCAAATGGTCATTGTTTC-AAAGGAAATTTATGGAATTGAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 608839 94 - 10520994 ATTGGAGAATAAGTTTGCCCCTCCCTCTGGCTGCGAGTTATTAGTAGAGATAACTCAAATGGTCATTAATTC-AAAGGAAATTTATGGGATGGAT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1309999 91 - 29863360 ATTGAAGAGTAAGTTT---TCTCCTTCCAATTATGAGTTATTAGTAAAGATAATTCAGATGATCATTGATTC-AAAGGAAGTTTATGGAATTTAT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76466125 92 + 120421639 ACTGGAGGATAGCTCT--ACCTCCTTCTGGTTGTGAGTTATTACATGACATCATCCAAGTATCCATCCATTC-CAAGGAAATTCATGGAATGCAT i mm10.chr13 C 0 C 0 s canFam3.chr3 14326358 88 + 91889043 ATTGGAGTG-----TT-CGTTTTTCTCTAGTGGTGAGTTATTAGTAGAGATAATTCAAATGGTGAATGATTA-ATCGGAAATTTATGGAATTTAT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1256653 85 - 11655695 ATTGAAGAGTTGACTT--------TTCTGGTTTTGAGTTATTCATAGAAATAATTTCAGTGGTCATTGATTC-AAAGGAAATTTATGGAATTTT- i dasNov3.JH570378 C 0 C 0 e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 357674 9 - 1393929 I e saiBol1.JH378106 44994958 0 + 71252344 C e calJac3.chr2 112546680 0 + 204313951 C a score=1184680.000000 s hg38.chr5_GL383530v1_alt 54925 166 + 101241 GTCACTGATGTCTT-GATATT-----CA----TAAATGTATAT--------TTACTGATGAGGAAATTAACACACTTAAATAA---TTTTTTTA--TTTTATAAGGTGATACTTTTAAATATTTTTTGATATAGCAGAGGGTTTTGATTTTTACAAAAGGCCTCAAATTAAGGGCAATTAGTGCTTATG s panTro5.chr5 20287807 166 + 181907262 GTCACTGATGTCTT-GATATT-----CA----TAAATGTATAT--------TTACTGATGAGAAAATTAACACACTTAAAGAA---TTTTTTTA--TTTTATAAGGTGATACTTTTAAATATTTTTTGATATAGCAGAGGGTTTTGATTTTTCCAAAAGGCCTCAAATTAAGGGCAGTTAGTGCTTATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300105 165 + 183735486 GTCACTGATGTCTT-GATATT-----CA----TAAATGTATAT--------TTACTGATGAGAAAATTAACACACTTAAAGAA----TTTTTTA--TTTTATAAGGTGATACTTTTAAATATTTTTTGATATAGCAGAGGGTTTTGATTTTTCCAAAAGGCCTCAAATTAAGGGCAGTTAGTGCTTATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4786896 166 - 13748885 GTCACTGATGTCTT-GATATT-----TA----TAAATGTATAT--------TTACTGATGAGAAAATTAACACACTTAAAGAA---TTTTTTTA--TTTTATAAGGTGATACTTTTAAATATTTTTGGATATAGCAGAGGGTTTTGATTTTTCCAAAAGGCCTCAAATTAAGGGCAATTAGTGCTTATG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53823936 157 - 163208435 GTCAC--------T-GATATT-----CA----TAAATGTATAT--------TTACTGATGAGAAAATTAACACACTTAAAGAA----TTTTTTA--TTTTATAAGGTAATACTTTTAAACTTTTTTTGATATAGCAGAGGGTTTTGATTTTTCCAAATGGCCTCAAATTAAGGGCAATTAGTGCTTATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87846750 164 - 180051392 GTCAGTGATGTCTT-GATATT-----CA----TAAATGTATAT--------TTATTGATGAGAAAATTAACACACTTAAATAA----TTTTTTA--TTTTATAACAT-ATACTTTTAAACATTTTTTGATATAGCAGAGGGTTTTGATTTTTCCAAATGGCCTCAAATTAAGGGCAATTAGTGCTTATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951172 164 - 181584905 GTCAGTGATGTCTT-GATATT-----CA----TAAATGTATAT--------TTATTGATGAGAAAATTAACACACTTAAATAA----TTTTTTA--TTTTATAACAT-ATACTTTTAAACATTTTTTGATATAGCAGAGGGTTTTGATTTTTCCAAATGGCCTCAAATTAAGGGCAATTAGTGCTTATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1173967 164 - 8785636 GTCAGTGATGTCTT-GATATT-----CA----TAAATGTATAT--------TTATTGATGAGAAAATTAACACACTTAAATAA----TTTTTTA--TTTTATAACAT-ATACTTTTAAACATTTTTTGATATAGCAGAGGGTTTTGATTTTTCCAAATGGCCTCAAATTAAGGGCAATTAGTGCTTATG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642309 164 + 27333823 GTCAGTGATGTCTT-GATATT-----CA----CAAATGTATAT--------TTATTGATGAGAAAATTAACACACTTAAATAA----TTTTTTA--TTTTATAACAT-ATACTTTTAAACATTTTTTGATATAGCAGAGGGTTTTGATTTTTCCAAATGGCCTCAAATTAAGGGCAATTAGTGCTTATA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1912528 164 - 91010382 GTCAGTGATGTCTT-GATATT-----CA----TAAATGTATAT--------TTATTGATGAGAAAATTAACACGCTTAAATAA----TTTTGTA--TTTTATAAGGT-ATACTTTTAAACATTTTTTGATATAGCAGAGGGTTTTGATTTTTCCAAATGGCCTCAAATTAAGGGCAATTGGTGCTTATG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2031641 164 + 5179401 GTCAGTGATGTCTT-GATATT-----CA----TAAATGTATAT--------TTATTGATGAGAAAATTAACACACTTAAATAA----TTTTTTA--TTTTATAACAT-ATACTTTTAAACATTTTTTGATATAGCAGAGGGTTTTGATTTTTCCAAATGGCCTCAAATTAAGGGCAATTAGTGCTTATG i manLeu1.NW_012103732v1 C 0 C 0 s micMur3.chr12 84838964 168 + 108143057 GCCAGTGATGTCTT-AACATT-----CA----TAAATTTATAT--------TTCTTGACAAGAAAATTAACACATTGGAAGAGA--GTTTTTCACTTCTTATATAGTAATACTTTATAACATCATTTGATATAGCGGAGGGTTTTGA-TTTTCAAAATGGCCTCAAACTAAGGGAAATTAGTTCTTACA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 608933 168 - 10520994 GCCAATGATGTCTT-GACATT-----CA----TAAATTTATAT--------TTCTTGACAAGAAAATTAACACACTGGAAGAGA--GTTTTTCACTTTTTATATAGTAATACTTTATAACATCATTTGATATAGCAGAGAATTTTGA-TTTTCCAAATGGCCTCAAACTAAGAGCAATTAGTGCTTACG i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1310090 162 - 29863360 GCCTGTGATGTCTT-AACATTGTTAACATTGTTAAATGTATAT--------TTCTT--------------CATACTTGAAGAGA--GTTTTTTGCTTTTTATGTAGTAATACTTGATAACATAATTTGACATAGCAGAGGGTTTTGA-TTTTCCAAATGGCCTCAAACTAAG-GCAATAAGTGCTTAtg i otoGar3.GL873536 C 0 I 7959 s mm10.chr13 76466217 170 + 120421639 GCCTGCGATGTCTTAGGCATT-----TT----GTGATCTGTGCTGTGGCTATTTGTGCTATGTGTCTTTATAGTTTCAAGAGAG--TTTTTCAG--TTTTCCTAAACAGTTCTTTATAATGTCATT-GAT-TAGCAGTGGGATTTGG-TTATCTGAATGACTTTATCCACAGGGAACTCAGTGTTC--- i mm10.chr13 C 0 C 0 s canFam3.chr3 14326446 171 + 91889043 GCCAATAATATCTTAGAAATT-----CA----TAAATGTATAT--------TTCTTGATGAGAAAATTAACACACTTTGGTGAGACTTTATTCACATTTTGTGTAGTAGTACCTTATAATATCATTTGTTATAGCAGAGGGTTTCAG-TTCTCCAAATGAACACAAACCAATGGCAGTTAGGGCTTGCA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1256738 152 - 11655695 TTCAGTGATATCTT-GAAAATG----CA----TAAATTTACAT--------TTCTTCATGAGAAAATTTACACACTTGAGGG-----TTTTACACTTTTTATATGGTAATACTTTAGAACCTCATTTGATAAA--------TTTTGA-TACTACAAAGGGACTC------ATGGTAATGAGAGTTTGCA i dasNov3.JH570378 C 0 C 0 e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 357674 9 - 1393929 I e saiBol1.JH378106 44994958 0 + 71252344 C e calJac3.chr2 112546680 0 + 204313951 C e colAng1.NW_012115488v1 7729722 0 - 21726897 C a score=764993.000000 s hg38.chr5_GL383530v1_alt 55091 88 + 101241 ATTAGCCTTTC-CCCCCTTTAGGTTG---GTA-AAGCTAAATTTA-TTACATTTGAAAGTCAAGCAT-TATAGAACAGGATGTTCTTATTTGACA s panTro5.chr5 20287973 88 + 181907262 ATTAGCCTTTC-CCCCCTTTAGGTTG---GTA-AAGCTAAATTTA-TTACATTTGAAAGTCAAGCAT-TATAGAACAGGATGTTCTTGTTTAACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300270 88 + 183735486 ATTAGCCTTTC-CCCCCTTTAGGTTG---GTA-AAGCTAAATTTA-TTACATTTGAAAGTCAAGCAT-TATAGAACAGGATGTTCTTGTTTAACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4787062 88 - 13748885 ATTAGCCTTTG-CCCGCTTTAGGTTG---GTA-AAGCTAAATTTA-TTACATTTGAAAGTCAAGCAT-TATAGAACAGGATGTTCTTGTTTGACA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53824093 88 - 163208435 ATTAGCCTTTC-CCCCCTTTAGGTTG---GTA-AAGCTAAATTTG-TTACATTTGAAAGTCAAGCAT-TATAGAACAGGATGATCTTGTTTAACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87846914 88 - 180051392 ATTAGCCTTTC-CCCCATTTAGGTTG---GTA-AAGCTAAATTTA-TTACATTTGAAAGTCAAGCAT-TATAGAACAGGATGttcttgtttaata i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951336 88 - 181584905 ATTAGCCTTTC-CCCCATTTAGGTTG---GTA-AAGCTAAATTTA-TTACATTTGAAAGTCAAGCAT-TATAGAACAGGATGttcttgtttaata i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1174131 88 - 8785636 ATTAGCCTTTC-CCCCATTTAGGTTG---GTA-AAGCTAAATTTA-TTACATTTGAAAGTCAAGCAT-TATAGAACATGATGttcttgtttaata i macNem1.NW_012011400v1 C 0 I 4697 s cerAty1.NW_012002401v1 1642473 88 + 27333823 ATTAGCCTTTC-CCCCATTTAGGTTG---GTA-AAGCTAAATTTA-TTACATCTGAAAGTCAAGCAT-TATAGAACAGGATGttcttgtttaata i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1912692 88 - 91010382 ATTAGCCTTTC-CCCCATTTAGGTTG---GTA-AAGCTAAATTTA-TTACATTTGAAAGTCAAGCAT-TATAGAACAGGATGttcttatttaata i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2031805 88 + 5179401 ATTAGCCTTTC-CCCCATTTAGGTTG---GTA-AAGCTAAATTTA-TTACATTTGAAAGTCAAGCAT-TATAGAACAGGATGttcttgtttaata i manLeu1.NW_012103732v1 C 0 C 0 s micMur3.chr12 84839132 91 + 108143057 ATTAGTCTTTC-CCCCCTTCAAACTGGTTGTG-AAGCCAAATTTA-TTACAGTTAAAAATTAAGCAT-TACAGGAAAGGATGCTCTTGCTTACTA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 609101 88 - 10520994 ATTCATCTTTC-CCCCCTTCAAACTG---GTG-AAGCTAAATTTA-TTACATTTGAAAGTTAAGCAT-TACAGGAAAGGATGCTCCTGCTTACTA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1318211 89 - 29863360 ATTAGTCTTTCTCCCCCTTCAAACTA---GCA-AAGCTCAATTTA-CTGTATTTGAAAATCAAGCAT-TACAGGGAAGGATGCTTCTGCCTACTA i otoGar3.GL873536 I 7959 C 0 s mm10.chr13 76466387 80 + 120421639 -----TCCTCC-CTCCCT---GCTTC---TCT-AAACAAAGCTTA-TTGCATTTGGAAGTCAAGTAT-TCCTGGGTAGGACATTTGTGTTTAATG i mm10.chr13 C 0 C 0 s canFam3.chr3 14326617 91 + 91889043 ATTAGTCTTTC-TCCCCTTCAAACTG---GTACCAACTAAATTTATTTACATTTGAGAATCAGACATGTACAGGACAGAATGTTCCTGTTTGATA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1256890 90 - 11655695 ATTAGTTCTTC-CCTCATTCAAACTT---GTATACACTACATTTATTTATATTTGAAAATCAATCAT-TATAGGATAGAATTTTTTGGTTTAATG i dasNov3.JH570378 C 0 C 0 e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 357674 9 - 1393929 I e saiBol1.JH378106 44994958 0 + 71252344 C e calJac3.chr2 112546680 0 + 204313951 C e colAng1.NW_012115488v1 7729722 0 - 21726897 C a score=694892.000000 s hg38.chr5_GL383530v1_alt 55179 95 + 101241 TTTAGTGCTCTTTTATTTTTATGC---------------------------------------------------ACTG-TTACAAAACTTTCTTGTGCTT-TCTTGACAAAAG--GAAGTTAGTTTGGCA-AACTA------TTTTTTTTCTGATC s panTro5.chr5 20288061 95 + 181907262 TTTACTCTTCTTTTATTTTTATGC---------------------------------------------------ACTG-TTACAAAACTTTCTTGTGCTT-TCTTGACAAAAG--GAAGTTAGTTTGGCA-AACTA------TTTTTTTTCTGATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300358 95 + 183735486 TTTACTCTTCTTTTATTTTTATGC---------------------------------------------------ACTG-TTACAAAACTTTCTTGTGCTT-TCTTGACAAAAG--GAAGTTAGTTTGGCA-AACTA------TTTTTTTTCTGATC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4787150 95 - 13748885 TTTAGTGTTCTTTTATTTTTATGC---------------------------------------------------ACTG-TTAAAAAACTTTCTTGTGCTT-TCTTGACAAAAG--GAAGTTAGTTTGGCA-AACTA------TTTTTTTTCTGATC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53824181 95 - 163208435 TTTAGTGTTCTTTTATTTTTATGT---------------------------------------------------ACTG-TTACAAAACTTTCTTGTGCTT-TCTTGACAAAAG--GAAGTTAGTTTGGCA-AACTA------TTTTTTTTCTGATC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847002 97 - 180051392 tttagtattcttttatttttatgt---------------------------------------------------aCTG-TTGGGAAACTTTCTTGTGCTT-TCTTGACAAAAG--GAAGTTAGTTTGGCA-AACTT----TTTTTTTTTTCTGATC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951424 100 - 181584905 tttagtattcttttatttttatgt---------------------------------------------------aCTG-TTGGGAAACTTTCTTGTGCTT-TCTTGACAAAAG--GAAGTTAGTTTGGCA-AACTG-TTTTTTTTTTTTTCTGATC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1178916 97 - 8785636 tttagtattcttttATTTTTATGT---------------------------------------------------ACTG-TTGGGAAACTTTCTTGTGCTT-TCTTGACAAAAG--GAAGTTAGTTTGGCA-AACTG----TTTTTTTTTTCTGATC i macNem1.NW_012011400v1 I 4697 C 0 s cerAty1.NW_012002401v1 1642561 98 + 27333823 tttagtattcttttatttttatgt---------------------------------------------------aCTG-TTGGGAAACTTTCTTGTGCTT-TCTTGACAAAAG--GAAGTTAGTTTGGCA-AACTG---TTTTTTTTTTTCTGATC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1912780 101 - 91010382 tttagtattcttttatttttatgt---------------------------------------------------aCTG-TTGGGAAACTTTCTTGTGCTT-TCTTGACAAAAG--AAAGTTAGTTTGGCA-AACTGTTTTTTTTTTTTTTCTGATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2031893 99 + 5179401 tttagtattcttttatttttatgt---------------------------------------------------aCTG-TTGGGAAACTTTCTTGTGCTT-TCTTGACAAAAG--GAAGTTAGTTTGGCA-AACTG--TTTTTTTTTTTCCGAACC i manLeu1.NW_012103732v1 C 0 C 0 s micMur3.chr12 84839223 96 + 108143057 TTTTGTATTGTTTCATTTTTGTCC---------------------------------------------------ACTG-CTAAGATACTTTCTTGTGCTC-CTTTGGCAAAGGGAGAAGATAGTTTAGCA-AACTA------TTGTTTTCTT-AGC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 609189 96 - 10520994 TTTTGTGTTGTTTCATTTTTATCC---------------------------------------------------ACTG-CTAAGATACTTTCTTGTGCTC-TTTGGGCAAAGGGAGAAGATACTTTAGCA-AACTA------TTGTTTTCTT-AGC i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1318300 149 - 29863360 TTTTGTGCTCTTTCATTTCTCTGCACTGCTAAGATACTTTCTTTTTCTTTTTCTTGTTTATCTTATTTTATTTTTACTG-CTAAGATACTTTCTTGTGTTCTCTTTGGCAAAGGGAGAAGCTAGTTTAGTA-AACTA------TTTTTTTCCTGAGC i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76466467 83 + 120421639 ---TTTGTGCTTTCATTTTTATCC---------------------------------------------------ACTG-TTGAGATTATTTCTTATGCTG-TTGGGACAAAGGGAGAAATTAG----------CTA--------TTTTTCTTGATC i mm10.chr13 C 0 C 0 s canFam3.chr3 14326708 99 + 91889043 TTTTATGCTTTCTCATTTTCATGC---------------------------------------------------ACTG-CTAAGATATTTTCTTGTGCTC-T-TTGGCAAAGGGAGAAGTTAGCATAGCACAACTA----TTTTTTTTTTCTGACC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1256980 97 - 11655695 TTGTATGTTCTCTCATGCTCATCC---------------------------------------------------ACTACTTAAAATATTTTCTTGTGTTC-TTTTGGCAAAGGGAAGAGTTAACTTAGCAAAACTA--------TTTTTTCTGCCC i dasNov3.JH570378 C 0 C 0 e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 357674 9 - 1393929 I e saiBol1.JH378106 44994958 0 + 71252344 C e calJac3.chr2 112546680 0 + 204313951 C e colAng1.NW_012115488v1 7729722 0 - 21726897 C a score=10028.000000 s hg38.chr5_GL383530v1_alt 55274 1 + 101241 T s panTro5.chr5 20288156 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300453 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4787245 1 - 13748885 T i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53824276 1 - 163208435 T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847099 1 - 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951524 1 - 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179013 1 - 8785636 T i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642659 1 + 27333823 T i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1912881 1 - 91010382 T i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2031992 1 + 5179401 C i manLeu1.NW_012103732v1 C 0 C 0 s saiBol1.JH378106 44994958 1 + 71252344 T i saiBol1.JH378106 C 0 C 0 s micMur3.chr12 84839319 1 + 108143057 T i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 609285 1 - 10520994 T i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1318449 1 - 29863360 T i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76466550 1 + 120421639 C i mm10.chr13 C 0 C 0 s canFam3.chr3 14326807 1 + 91889043 T i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1257077 1 - 11655695 T i dasNov3.JH570378 C 0 C 0 e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 357674 9 - 1393929 I e calJac3.chr2 112546680 0 + 204313951 C e colAng1.NW_012115488v1 7729722 0 - 21726897 C a score=104119.000000 s hg38.chr5_GL383530v1_alt 55275 8 + 101241 CATTTTAT s panTro5.chr5 20288157 8 + 181907262 CATTTTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300454 8 + 183735486 CATTTTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4787246 8 - 13748885 CATTTTAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53824277 8 - 163208435 CATTTTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847100 8 - 180051392 CATTTTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951525 8 - 181584905 CATTTTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179014 8 - 8785636 CATTTTAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642660 8 + 27333823 CATTTTAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1912882 8 - 91010382 CATTTTAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2031993 8 + 5179401 AATTTAAT i manLeu1.NW_012103732v1 C 0 C 0 s calJac3.chr2 112546680 8 + 204313951 CATTTTAC i calJac3.chr2 C 0 I 2 s saiBol1.JH378106 44994959 8 + 71252344 CATTTTAC i saiBol1.JH378106 C 0 I 2 s micMur3.chr12 84839320 8 + 108143057 CATTTTAT i micMur3.chr12 C 0 I 2 s proCoq1.NW_012147189v1 609286 8 - 10520994 CATTTTAT i proCoq1.NW_012147189v1 C 0 I 2 s otoGar3.GL873536 1318450 8 - 29863360 CCTTTTAT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76466551 8 + 120421639 CATTTTGT i mm10.chr13 C 0 I 3 s canFam3.chr3 14326808 8 + 91889043 CATTTTGT i canFam3.chr3 C 0 I 3 s dasNov3.JH570378 1257078 8 - 11655695 TATTTTAT i dasNov3.JH570378 C 0 I 2 e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 357674 9 - 1393929 I e colAng1.NW_012115488v1 7729722 0 - 21726897 C a score=1022727.000000 s hg38.chr5_GL383530v1_alt 55283 88 + 101241 TT-TAAAAAAATGCTTAGTGTTTTTGTAGCATCAAAGTGGCA-AAAATAG---AATTTGAATTCATATTTGTAGGGTCTGTGGCAGGTCTAGA s panTro5.chr5 20288165 89 + 181907262 TTAAAAAAAAATGCTTAGTAGTTTTGTAGCATCAAAGTGGCA-AAAACAG---AATTTGAATTCATATTTGTAGGGTCTGTGGCAGGTCTAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300462 89 + 183735486 TTAAAAAAAAATGCTTAGTAGTTTTGTAGCATCAAAGTGGCA-AAAACAG---AATTTGAATTCATATTTGTAGGGTCTGTGGCAGGTCTAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4787254 88 - 13748885 TT-TAAAAAAATGCTTAGTGTTTTTGTAGCATCAAAGTGGCA-AAAATAG---AATTTGAATTCATATTTGTAGGGTCTGTGGCAGGTCTAGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53824285 88 - 163208435 TT-AAAAAAAATGCTTAGTGTTTTTGTAGCATCAAAATGGCA-AAAATAG---AATTTGAATTCATATTTATAGGGTCTGTGGCAGGTCTGGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847108 88 - 180051392 TCTTTAAAAAATGCTTAGTG-TTTTGTAGCATCAAAGTGGCA-AAAACAG---AATTTGAATTCATATTTATAGAGTCTGTGGCAAGTCTAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951533 88 - 181584905 TCTTTAAAAAATGCTTAGTG-TTTTGTAGCATCAAAGTGGCA-AAAACAG---AATTTGAATTCATATTTATAGAGTCTGTGGCAAGTCTAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179022 88 - 8785636 TCTTTAAAAAATGCTTAGTG-TTTTGTAGCATCAAAGTGGCA-AAAAAAG---AATTTGAATTCATATTTATAGAGTCTGTGGCAAGTCTAGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642668 88 + 27333823 TCTTTAAAAAATGCTTAGTG-TTTTGTAGCACCAAAGTGGCA-AAAACAG---AATTTGAATTCATATTTATAGGGTCTGTGGCAGGTCTAGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1912890 89 - 91010382 TCTTTAAAAAATGCTTAGTGTTTTTGTAGCATCAAAGTGGCA-AAAACAG---AATTTGAATTCATATTTATAGGGTCTGTGGCAGGTCTAGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032001 88 + 5179401 CCTTAAAAAAATGCTTAGTG-TTTTGTAGCATCAAAGTGGCA-AAAACAG---AATTTGAATTCATATTTATAGAGTCTGTGGCAAGTCTAGA i manLeu1.NW_012103732v1 C 0 C 0 s calJac3.chr2 112546690 88 + 204313951 -TTCAAATAAATGCTTAGGGTTTTTGTAACATCAAAGTGGCA-AAAATAA---AATTTTAATTCATGTTTATAGGGTCTGTGGCAGGTCTAGA i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 44994969 88 + 71252344 -TTTAAATAAATGCTTAGTGTTTTTGTAGCATCAAGGTGGCA-AAAATAA---AATTTGAATTCATATTTATAGGGTCTGTGGCAGGTCTAGA i saiBol1.JH378106 I 2 C 0 s cebCap1.NW_016107830v1 357683 88 - 1393929 -TTTAAATAAATGCTGAGTGTTTTTGTAGCATCAAAGTGGCA-AAAATAA---AATTTGAATTCATATTTATAGGGTCTGTGGCAGGTCTAGA i cebCap1.NW_016107830v1 I 9 C 0 s micMur3.chr12 84839330 89 + 108143057 -TTTTAAAAAGTGGTTAGT--TTTTATAGCATCAAAATGGCA-AAAATAAGAGGATTTGAATTCCTATTTATAGAATCTGTGGCAGATCTAGA i micMur3.chr12 I 2 C 0 s proCoq1.NW_012147189v1 609296 89 - 10520994 -TTTTGAAAAGTGGTTAGT--TTTTATAGCATCGAAGTGGCA-AAAATAGGAGGATTTGAATTCCTATATGTAGAATCTGTGGCAGGTCTAGA i proCoq1.NW_012147189v1 I 2 C 0 s otoGar3.GL873536 1318458 88 - 29863360 -TTTTAAAACATGCTTAGT--TTTTATAGTGGCAAAGTGGCA-AAACCAGGA-GATTTGAATTCCTATTGATAGGCTCTATGGCAGCTCTAAA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76466562 87 + 120421639 TTCTTATAAAATTTTT-----CATTTTAGCACCCAAGTGGGA-AAACCAGGAAGATCTAAATTCATGTTTACAGAGTCTATGACAAGCTTAAA i mm10.chr13 I 3 C 0 s canFam3.chr3 14326819 86 + 91889043 --TTTAAAAA---CTCAGTC-TTATGCAGCACCAAAGTGGCA-AAAATAGAAGGATCTTAATTCACATTTATAGGGTGTGTAGCAGGTCTAAA i canFam3.chr3 I 3 C 0 s dasNov3.JH570378 1257088 90 - 11655695 -TTTTAAAAAATCCTTAGTT-TTTTATAGCATCAAAGTGACAGAAAATAGAAGGATTTGAATTC-CATTTTCAGGAACAGTAACAGGTCTAGA i dasNov3.JH570378 I 2 C 0 e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e colAng1.NW_012115488v1 7729722 0 - 21726897 C a score=1401473.000000 s hg38.chr5_GL383530v1_alt 55371 104 + 101241 AAACAACCCT-AGCACACAAGTC-AGAAATTGTAGGTCATTTAGGGAAATGGAGTTGACG-AAGTCAG---GCTTCAAGGTCATTATACTGGTTGTATCTGAGAGTCAAA s panTro5.chr5 20288254 104 + 181907262 AAACAACCCT-AGCACACAAGTC-AGAAATTGTAGGTCATTTAGGGAAATGGAGTTGACG-AAGTCAG---GCTTCAAGGTCATTATACTGGTTGTATCTGAGAGTCAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300551 104 + 183735486 AAACAACCCT-AGCACACAAGTC-AGAAATTGTAGGTCATTTAGGGAAATGGAGTTGACG-AAGTCAG---GCTTCAAGGTCATTATACTGGTTGTATCTGAGAGTCAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4787342 104 - 13748885 AAACAACCCT-AGCACACAAGTC-AGAAATTGTAGGTCATTTAGGGAAATGGAGTTGACG-AAGTCAG---GCTTCAAGGTCATTATACTGGTGGTATCTGAGAGTCAAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53824373 104 - 163208435 AAACAACCCT-AGCACACAAGTC-AGAAATTGTAGGTCATTTAGGGGAATGGAGTTGACA-AAGTCAG---GCTTCAAGGTCATTATACTGGTTATATCTGAGAGTCAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847196 104 - 180051392 AAACAACCCT-AGCACACAAGTC-AGAAACTGTAGGTCATTTAGGGAAATGGCGTTGAGG-AAGTCAG---GCTTCAAGGTCATTATACTGGTTGTATCTGACAGtcaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951621 104 - 181584905 AAACAACCCT-AGCACACAAGTC-AGAAACTGTAGGTCATTTAGGGAAATGGCGTTGAGG-AAGTCAG---GCTTCAAGGTCATTATACTGGTTGTATCTGAGAGTCAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179110 104 - 8785636 AAACAACCCT-AGCACACAAGTC-AGAAACTGTAGGTCATTTAGGGAAATGGCGTTGAGG-AAGTCAG---GCTTTAAGGTCATTATACTGGTTGTATCTGAGAGtcaaa i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642756 104 + 27333823 AAACAACCCT-AGCACACAAGTC-AGAAACTGTAGGTCATTTAGGGAAATGGCGTTGAGG-AAGTCAG---GCTTCAAGGTCATTATACTGGTTGTATCTGAGAGtcaaa i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1912979 104 - 91010382 AAACAACCCT-AGCACACAAGTC-AGAAACTGTAGGTCATTTAGGGAAACGGAGTTGAGG-AAGTCAG---GCTTCAAGGTCATTATACTGGTTGTATCTGAGAGTCAAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032089 104 + 5179401 AAACAACCCT-AGCACACAAGTC-AGAAACTGTAGGTCATTTAGGGAAATGGCATTGAGG-AAGTCAG---GCTTCAAGGTCATTATACTGGTTGTATCTGAGAGtcaaa i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729722 104 - 21726897 AAACAACCCT-AGCACACAAGTC-AGAAACTGTAGGTCATTTAGGGAAACGGCATTGAGG-AAGTCAG---GCTTCAAGGTCATTATACTGGTTGTATCTGAGAGTCAAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112546778 96 + 204313951 AAACAAGCCT-AGCACACAAGTC-AGAAATTGTAGGTCATTTAGGAAAATAGAGTTGAGG-AAGTC-----------AGGTCATAATACTGGTGGTATCTGAGATTCAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44995057 104 + 71252344 AAACAACCCT-AGCACACACGTC-AGGAATTATAGGTCATTTAGGGAAATAGAGTTGAGG-AAGTCAG---GCTTCAAGGTCATAATACTGGTTGTATCTGAGATTCAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 357771 104 - 1393929 AAACAACCCT-AGCACACAAGTC-AGAAATTGTAGGTCATTTAGGGAAATAGAGTTGAGG-AAGTCAG---GCTTCAAGGTCATAATACTGGTTGTATCTGAGATTCAAA i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84839419 102 + 108143057 AAACAACCCTCAGCACAAAAGTC-AGAAGTTGTAGGTGATTTATGAAAATGGAGTT---G-AAGTCAG---GCTTCTACTTCGTACTACTGGTTGTATCTGAGGGTCAAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 609385 105 - 10520994 AAACAACCCTCAGCACAAAAGTC-AGAAGTTGCAGGTCATTTATGAAAATGGAGTTGAGG-AAGTCAG---GCTTCTAGGTCATAATACTGGTTGTATCTGAGGGTCAAA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1318546 105 - 29863360 AAATAGCCCTTAGCATAAAAGTC-CAAAGTGGCAGGTCATTTATGGAAATGCAGTTAAAG-AAGTCAG---ACTTTTAGGTTATAACACTGATTGTCTTTACAGATCAAA i otoGar3.GL873536 C 0 I 3713 s mm10.chr13 76466649 109 + 120421639 AAACAGCTCTCAGCATGTAGGTG-AGAGGCTGCAGGGCATTCAGGGATAGTAAACTGAGACCAGTTGATCCACCACTAGATCATAATAATAACATTGGCCAAGGGTCAGA i mm10.chr13 C 0 C 0 s canFam3.chr3 14326905 104 + 91889043 AAACATCCCTGAGCACCCAAGTC-AGAAGGTGCAGGTCATTGAGGGAAATTGAGCAGGGG--AGTCAA---GCTTCTAGGATGTACTACTGATTGTTGCTGAGCATTATG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1257178 103 - 11655695 AAACAAAACTCAGTACATTAGTCAAGAAATTGTAGGTTA---AGGGAAACTGAGCTTAGA-GAGTCGG---GCTTCTAGGTAATAGTATTAATGGTATGTGAGGGCCAAA i dasNov3.JH570378 C 0 C 0 e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=386722.000000 s hg38.chr5_GL383530v1_alt 55475 37 + 101241 GCTAGGAATTT----TATAAAG----AGCATCATAACTGATCTTC s panTro5.chr5 20288358 37 + 181907262 GCTAGGAATTT----TATAAAG----AGCATCATAACTGATCTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300655 37 + 183735486 GCTAGGAATTT----TATAAAG----AGCATCATAACTGATCTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4787446 37 - 13748885 GCTAGGAATTT----TATAAAG----AGCATCATAACTGATCTTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53824477 37 - 163208435 GCTAGGAATTG----TATAAAG----AGCATCATAACTGATCTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847300 37 - 180051392 gctaggaattt----tatagag----agcatcatagctgatctTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951725 37 - 181584905 GCTAGGAATTT----TATAGAG----AGCATCATAGATGATCTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179214 37 - 8785636 gctaggaattt----tatagag----agcatcatagctgatctTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642860 37 + 27333823 gctaggaattt----tatagag----agcatcatagctgatctTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1913083 37 - 91010382 GCTAAGAATTT----TATAGAG----AGCATCATAGCTGATCTTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032193 37 + 5179401 gctaggaattt----tatagag----agcatcatagctgatctTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729826 26 - 21726897 GC---------------TAGAG----AGCATCATAGCTGATCTTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112546874 37 + 204313951 GCTAGCAATTT----TATAAAC----ATCATCATAACTGATCGTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44995161 37 + 71252344 GCTAGCAATTT----TATAAAC----AGCATCATAACTGATCATC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 357875 37 - 1393929 GCTAGCAATTT----TATAAAC----AGCATCATAACTGATCGTC i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84839521 40 + 108143057 GTTAGGAACTT----TGTATAGAAA-AGCATCATAACTGGTCTTC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 609490 41 - 10520994 ATTAGGAACTT----TATACAGAAACAGCATCATAACTGGTCTTC i proCoq1.NW_012147189v1 C 0 I 44 s mm10.chr13 76466758 18 + 120421639 -------ACCG----GACAAAG----------------GCTCTTC i mm10.chr13 C 0 C 0 s canFam3.chr3 14327009 41 + 91889043 GCTAGAAACTTTTAATAGAAAC----AGCATCATAACTGGTCTTC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1257281 41 - 11655695 CCTGAAAAATTAGTCTAGAAAT----AGAATCATAACTGTTCTTC i dasNov3.JH570378 C 0 C 0 e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=61273.000000 s hg38.chr5_GL383530v1_alt 55512 5 + 101241 CTTTA s panTro5.chr5 20288395 5 + 181907262 CTTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300692 5 + 183735486 CTTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4787483 5 - 13748885 CTTTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53824514 5 - 163208435 CTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847337 5 - 180051392 TTTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951762 5 - 181584905 TTTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179251 5 - 8785636 TTTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642897 5 + 27333823 TTTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1913120 5 - 91010382 TTTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032230 5 + 5179401 TTTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729852 5 - 21726897 TTTTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112546911 5 + 204313951 TTTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44995198 5 + 71252344 TTTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 357912 5 - 1393929 TTTTA i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84839561 5 + 108143057 TCTGA i micMur3.chr12 C 0 I 28 s mm10.chr13 76466776 5 + 120421639 TTTTG i mm10.chr13 C 0 C 0 s canFam3.chr3 14327050 5 + 91889043 TTTTA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1257322 5 - 11655695 TTTTA i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 609531 44 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=242399.000000 s hg38.chr5_GL383530v1_alt 55517 29 + 101241 TACCCCTTCA------AACCTCTGTATTTATAACT- s panTro5.chr5 20288400 27 + 181907262 TA--CCTTCA------AACCTCTGTATTTATAACT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300697 27 + 183735486 TA--CCTTCA------AACCTCTGTATTTATAACT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4787488 29 - 13748885 TACCCCTTCA------AACCTCTGTATTTATAACT- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53824519 29 - 163208435 TACCCCTTCA------AACCTCTGTATTTATAACA- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847342 29 - 180051392 TCCCCCTTCA------AACCTCTGTATTTATAACA- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951767 29 - 181584905 TCCCCCTTCA------AACCTTTGTATTTATAACA- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179256 29 - 8785636 TCCCCCTTCA------AACCTCTGTATTTATAACA- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642902 29 + 27333823 TCCCCCTTCA------AACCTCTGTATTTATAACA- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1913125 29 - 91010382 TACCCCTTCA------AACCTCTGTATTTATAACA- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032235 29 + 5179401 TCCCCCTTCA------AACCTCTGTATTTATAACA- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729857 29 - 21726897 TACCCCTTCA------AACCTCTGTATTTATAACA- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112546916 29 + 204313951 TACCCCTTCA------AAACTCTCTATTTACAACA- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44995203 29 + 71252344 TACCCCTTCA------TAACTCTGTATTTACAATA- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 357917 29 - 1393929 TACCCCTTCA------AAACTCTGTATTTATAACA- i cebCap1.NW_016107830v1 C 0 C 0 s mm10.chr13 76466781 27 + 120421639 --CCCCTGTAGCTTATGAATTCTGTATTA------- i mm10.chr13 C 0 C 0 s canFam3.chr3 14327055 27 + 91889043 --TCCCCTCA------AGCTCGTGTACTCCTTACA- i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1257327 29 - 11655695 -CCCTCCTCA------AGTTTGTGTATTTCTTACAG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84839566 28 + 108143057 I e proCoq1.NW_012147189v1 609531 44 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=124458.000000 s hg38.chr5_GL383530v1_alt 55546 10 + 101241 AACTCATTCT s panTro5.chr5 20288427 10 + 181907262 AGCTCATTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300724 10 + 183735486 AGCTCATTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4787517 10 - 13748885 AGCTCATTCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53824548 10 - 163208435 AGCTCATTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847371 10 - 180051392 AATTCATTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951796 10 - 181584905 AATTCATTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179285 10 - 8785636 AATTCATTCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642931 10 + 27333823 AACTCATTCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1913154 10 - 91010382 AACTCATTCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032264 10 + 5179401 AACTCATTCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729886 10 - 21726897 AACTCATTCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112546945 10 + 204313951 AGCTCATTCG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44995232 10 + 71252344 AGCTCATTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 357946 10 - 1393929 AGCTCATTCT i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84839594 10 + 108143057 AGTTCATTAT i micMur3.chr12 I 28 C 0 s mm10.chr13 76466808 10 + 120421639 AACTCACGCT i mm10.chr13 C 0 C 0 s canFam3.chr3 14327083 10 + 91889043 AGCTCATTCT i canFam3.chr3 I 1 C 0 s dasNov3.JH570378 1257356 10 - 11655695 AGCACATTCT i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 609531 44 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=626452.000000 s hg38.chr5_GL383530v1_alt 55556 48 + 101241 GATTATATGAGGATCTGCAAGTAGAATAAAGATAGCTACAAC-TTTTTT s panTro5.chr5 20288437 48 + 181907262 GATTATATGAGGATCTGCAAGTAGAATAAAGATAGCTACAAC-TTTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300734 48 + 183735486 GATTATATGAGGATCTGCAAGTAGAATAAAGATAGCTACAAC-TTTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4787527 48 - 13748885 GATTATATGAGGATCTGCAAGTAGAATAAAGATAGCTACAAC-TTTTTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53824558 48 - 163208435 GATTATATGAGGATCTGCAAGTAGAATAAAGATAGTTACAAC-TTTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847381 48 - 180051392 GATTATATGAGGATCTACAAGTAGAATACAAATAGTTACAAT-TTTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951806 48 - 181584905 GATTATATGAGGATCTACAAGTAGAATACAAATAGTTACAAC-TTTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179295 48 - 8785636 GATTATATGAGGATCTGCAAGTAGAATACAAATAGTTACAAC-TTTTTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642941 48 + 27333823 GATTATATGAGGATCTACAAGTAGAATACAAATAGTTACAAC-TTTTTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1913164 48 - 91010382 GATTATATGAGGATCTACAAGTAGAATACAAATAGTTACAAC-TTTTTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032274 48 + 5179401 GATTATATGAGGACCTACAAGTAGAATACAAATAGTTACAAC-TTTTTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729896 48 - 21726897 GATTATATGAGGATCTACAAGTAGAATACAAATAGTTACAAC-TTTTTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112546955 46 + 204313951 GATTATATGAGGATCTGCAATTAGAATAAA---AGTTACAACTTTTTTT i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 44995242 48 + 71252344 GATTATATGAGGATCTGCAATTAGAATAAAGATAGTTACAAC-TTTTTT i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107830v1 357956 48 - 1393929 GATTATATGAGGACCTGCAATTAGAATAAAGATAGTTACAAC-TTTTTT i cebCap1.NW_016107830v1 C 0 I 1 s micMur3.chr12 84839604 48 + 108143057 GATTATATGATGTTCTACAAGTAGAATACAGATAGCTACATC-TTTTTT i micMur3.chr12 C 0 I 7 s proCoq1.NW_012147189v1 609575 48 - 10520994 GATTATATGATGATCTACAAGTGGAATAAAGATGGTTACATC-TTTTTT i proCoq1.NW_012147189v1 I 44 I 21801 s mm10.chr13 76466818 44 + 120421639 CATTATTTGAATGTCTAGAAGTAGAACGGACAAAGTTA-----TTTTGT i mm10.chr13 C 0 I 1 s canFam3.chr3 14327093 48 + 91889043 GATTATACAAGGATCCACAAGTAGAACAAAGATGGCTACTTT-TTTTTT i canFam3.chr3 C 0 I 3 s dasNov3.JH570378 1257366 47 - 11655695 GATTATGTGAGGGAGTACAAGTAGAATAAAAATGGCTGCATC-TCTTT- i dasNov3.JH570378 C 0 C 0 e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=713582.000000 s hg38.chr5_GL383530v1_alt 55604 79 + 101241 GTACTGTGATTAAAAATGAAAGCAATTAAACACTTTTATTGTTTGCTTTATTAACTATAAATTAGTGTTCAGAATTTTT s panTro5.chr5 20288485 74 + 181907262 GTACTGTGATTAAAAATGAAAACAATTAAACAC-----TTGTTTGCTTTATTAACTATAAATTAGTGTTCAGAATTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300782 77 + 183735486 GTACTGTGATTAAAAATGAAAACAATTAAACAC--TTATTGTTTGCTTTATTAACTATAAATTAGTGTTCAGAATTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4787575 79 - 13748885 GTACTGTGATTAAAAATGAAAGCAATGAAACACTTTTATTGTTTGCTTTATTAACTATAAATTAGTGTTCAGAATTTTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53824606 79 - 163208435 GTACTGCAATTAAAAATGAAAGCAATTAAACACTTTTATTGTTTGCTTTATTAACTATAAATTAGTGTTCAGAATTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847429 79 - 180051392 GTACTGTAATTAAAACTGAAAGCAATTAAACAATTTTATTGTTTGCTTTATTAACTACAAATTAGTGTTCAGAATTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951854 79 - 181584905 GTACTGTAATTAAAACTGAAAGCAATTAAACAATTTTATTGTTTGCTTTATTAACTACAAATTAGTGTTCAGAATTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179343 79 - 8785636 GTACTGTAATTAAAACTGAAAGCAATTAAACAATTTTATTGTTTGCTTTATTAACTACAAATTAGTGTTCAGAATTTTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1642989 79 + 27333823 GTACTGTAATTAAAACTGAAAGCAATTAAACAATTTTATTGTTTGCTTTATTAACTACAAATTAGTGTTCAGAATTTTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1913212 79 - 91010382 GTACTGTAATTAAAACTGAAAGCAATTAAACAATTTTATTGTTTGCTTTATTAACTACAAATTAGTGTTCAGAATTTTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032322 79 + 5179401 GTACTGTAATTAAAACTGAAAGCAATTAAACAATTTTATTGTTTGCTTTATTAACTACAAATTAGTGTTCAGAATTTTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7729944 76 - 21726897 GTACTGTAATTAAAACTGAAAGCAATTAAACAATT---TTGTTTGCTTTATTAACTACAAATTAGTGTTCAGAATTTTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112547002 75 + 204313951 GTACTGTAATTAAAAATGAAAGCAATTAAACAATT---TTATTTGCTTTATTAATTATAAGTTAATATTCAGAA-TTTT i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 44995291 75 + 71252344 GTACTGTAATTAAAAATGAAAGCAATTAAACAATT---TTGTTTGCTTTATTAATTATAAGTTAGCATTCAGAA-TTTT i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107830v1 358005 75 - 1393929 GTACTGTAATTAAAAATGAAAGCAATTAAACAATT---TTGTTTGCTTTATTAATTATAAGTTAGTCTTTAGAA-TTTT i cebCap1.NW_016107830v1 I 1 C 0 s micMur3.chr12 84839659 65 + 108143057 GCACTGTAA-------TGATAGCAGCAAAACAATT-------TTGTTTCATTAACTACAAATTAACCTTCAGAATTTTT i micMur3.chr12 I 7 C 0 s mm10.chr13 76466863 69 + 120421639 GTACTGTAATAAAACATG---------AAACAGTTGCTTTGTTTATTTTATT-GCTATAATTTAACCTTGAACATTTCT i mm10.chr13 I 1 C 0 s canFam3.chr3 14327144 71 + 91889043 GTACTATAATAAAA----AAAGATATGGAACAATTTTATTGT----CTTATTAACTATAATTTAACTTTAAGAATTTCT i canFam3.chr3 I 3 I 184 s dasNov3.JH570378 1257413 13 - 11655695 --------------------------------------CTGTCT-Ctttatt--------------------------- i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=3757014.000000 s hg38.chr5_GL383530v1_alt 55683 363 + 101241 ATTAA--------------------GATATGCTTACTTCCTTATAACTTCTACTACACTAGACATTTAATCTAGAAATAAACGTAAAAAGC-CAA------------TTTTC-TTTTTTTTGCCAGAAGTCAATCTGATGTTGTAAAATGTCATATGTTACCTGTCAG-TA---TAGTG-ATTTTTATGTTTTAAT-TCAAATGCTTTTCAGCTGGAGTTGCCAAAGTTCAGTAAGAATTTGCAAAGCATTTCTATGCCAAGAACTGTACAGAATT----AAAAAA---ATGACAGATTGTAATCTGGT-GGGGAGATACCCATATATGTTAACTATA----GGATAAGTATGGGTAAAACAAGTAAGAGAGGTA--AAATAAATTAGAATGATT-AAGAAACGTAGCATTCATTTTG s panTro5.chr5 20288559 362 + 181907262 ATTAA--------------------GATATGCTTACTTCCTTATAACTTCTACTACACTAGACATTTAATATAGAAATAAAGGTAAAAAGC-CAA------------TTTTC-TTTTTTTTGCCAGAAGTCAATCTGATGTTGTAAAATGTCATATGTTACCTGTCAG-TA---TAGTG-ATTTTTATGTTTTAAT-TCACATGCTTTTCAGCTGGTGTTGCCAAAGTTCAGTAAGAATTTGCAAAGCATTTCTATGCCAAGAACTGTACAGAATT-----AAAAA---ATGACAGATTGTAATCTGGT-GGGGAGATACCCATATATGTTAACTATA----GGATAAGTATGGGTAAAACAAGTAAGACAGGTA--AAATAAATTAGAATGATT-AAGAATCGTAGCATTCATTTTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20300859 361 + 183735486 ATTAA--------------------GATATGCTTACTTCCTTATAACTTCTACTACACTAGACATTTAATATAGAAATAAAGGTAAAAAGC-CAA------------TTTTC--TTTTTTTGCCAGAAGTCAATCTGATGTTGTAAAATGTCATATGTTACCTGTCAG-TA---TAGTG-ATTTTTATGTTTTAAT-TCACATGCTTTTCAGCTGGTGTTGCCAAAGCTCAGTAAGAATTTGCAAAGCATTTCTATGCCAAGAACTGTACAGAATT-----AAAAA---ATGACAGATTGTAATCTGGT-GGGGAGATACCCATATATGTTAACTATA----GGATAAGTATGGGTAAAACAAGTAAGACAGGTA--AAATAAATTAGAATGATT-AAGAATCGTAGCATTCATTTTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4787654 362 - 13748885 ATTAA--------------------GATATGCTTACTTCCTTATAACTGCTACTACACTAGACATTTAATCTAGAAATAAAGGTAAAAAGC-CAA------------TTTTC-TTTTTTTTGCCAGAAGTCAATCTGATGTTGTAAAATGTCATATGTTACCTGTCAG-TA---TAGTG-ATTTTTATGTTTTAAT-TCAAATGCTTTTCAGCTGGTGTTGCCAAAGTTCAGTAAGAATTTGCAAAGCATTTCTATGCCAAGAACTGTACAGAATT-----AAAAA---ATGACAGATTGTAATCTGGT-GGGGAGATACCCATATATGTTAACTATA----GGATAAGTATGGGTAAAACAAGTAAGAGAGGTA--AAATAAATCAGAATGATT-AAGAAACATAGCATTCATTTTG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53824685 363 - 163208435 ATTAA--------------------GATATGCTTACTTCCTTATAACTTCTACTATACTAGACATTTAATCTAGAAATAAAGGTAAAGAGTACAC------------TTTTT-TTTTTTTTGCCAGAAGTCAATCTGATGTTGTAAAATGTCATATGCTACCTGTCAG-TA---TAGTG-ATTTTTATGTTTTAAT-TCAAATGCTTTTCAGCTGGTGTTGCCAAAGTTCAATAAGAATTTGCACAGCATTTCTATACCAAGAACTGTACAGAATT-----AAAAA---ATGAGAGATTGTAATCTGGT-GGGGAGATACCCATATATGTTGACTATA----GGATAAGTATGGGTAAAACAAGTAAGAGAGGTA--AAACAAATTAGAATGATT-AAGAAATGTAGCATTCATTTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847508 361 - 180051392 ATTAA--------------------GATGTGCATACTTCCTTATAACTTCTACCACACTAGACATTTTATCTAGAAATAAAGGTAAAAAGTACAC------------TTTTC-TTTTTTTTGCCAGAAGTCAATCTGATGTTGTAAAATGTC--ATGTTACCTGTCAG-TA---TAGTG-ATTTTTATGTTTTAAT-TCAAATGCTTTTCAGCTGATGATGCCAAAGTTCAGTAAGAATTTGCGCAGCATTTATATGCCAAGAACTGTATGGAATT-----AAAAA---ATGAGAGATTATAATCTGGT-GGGGAGATACCCATATATGTTGACTATA----GGATAAGTATGGGCGAAACAAGTAAGAGAGGTA--AAACAAATAAGAACAATT-AAGAAACGTAGCATTCGTTTTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87951933 361 - 181584905 ATTAA--------------------GATGTGCATACTTCCTTATAACTTCTACCACACTAGACATTTTATCTAGAAATAAAGGTAAAAAGTACAC------------TTTTC-TTTTTTTTGCCAGAAGTCAATCTGATGTTGTAAAATGTC--ATGTTACCTGTCAG-TA---TAGTG-ATTTTTATGTTTTAAT-TCAAATGCTTTTCAGCTGATGATGCCAAAGTTCAGTAAGAATTTGCGCAGCATTTATATGCCAAGAACTGTATGGAATT-----AAAAA---ATGAGAGATTATAATCTGGT-GGGGAGATACCCATATATGTTGACTATA----GGATAAGTATGGGCGAAACAAGTAAGAGAGGTA--AAACAAATAAGAACAATT-AAGAAACGTAGCATTCGTTTTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179422 361 - 8785636 ATTAA--------------------GATGTGCATACTTCCTTATAACTTCTACCACACTAGACATTTTATCTAGAAATAAAGGTAAAAAGTACAC------------TTTTC-TTTTTTTTGCCAGAAGTCAATCTGATGTTGTAAAATGTC--ATGTTACCTGTCAG-TA---TAGTG-ATTTTTATGTTTTAAT-TCAAATGCTTTTCAGCTGATGATGCCAAAGTTCAGTAAGAATTTGCGCAGCATTTATATGCCAAGAACTGTATGGAATT-----AAAAA---ATGAGAGATTATAATCTGGT-GGGGAGATACCCATATATGTTGACTATA----GGATAAGTATGGGCGAAACAAGTAAGAGAGGTA--AAACAAATAAGAACAATT-AAGAAACGTAGCATTCGTTTTG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1643068 361 + 27333823 ATTAA--------------------GATGTGCATACTTCCTTATAACTTCTAGCACACTAGACATTTTATCTAGAAATAAAGGTAAAAAGTACAC------------TTTTC-TTTTTTTTGCCAGAAGTCAATCTGATGTTGTAAAATGTC--ATGTTACGTGTCAG-TA---TAGTG-ATTTTTATGTTTTAAT-TCAAATGCTTTTCAGCTGATGATGCCAAAGTTCAGTAAGAATTTGCACAGCATTTATATGCCAAGAACTGTATGGAAAT-----AAAAA---ATGAGAGATTATAATCTGGT-GGGGAGATACCCATATATGTTGACTATA----GGATAAGTATGGGCGAAACAAGTAAGAGAGGTA--AAACAAATCAGAACAATT-AAGAAACGTAGCATTCGTTTTG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1913291 367 - 91010382 ATTAA--------------------GATATGCGTACTTCCTTATAACTTCTACTACACTAGACATTTTATTTAGAAATAAAGGTAAAAAGTACGC------------TTTTCTTTTTTTTTGCCAGAAGTCAATCTGATGTTGTAAAATGTCATATGTTACTTGTCAG-TATTTTTATG-ATTTTTATGTTTTAAT-TCAAATGCTTTTCAGCTGATGATGCCAAAGTTCAGTAAGAATTTGCACAGCATTTATATGCCAAGAACTGTATGGAATT-----AAAAA---ATGAGAGATTGTAATCTGGT-GGGGAGATACCCATATATGTTGACTATA----GGATAAGTATGGGTGAAACAAGTAAGAGAGGTA--AAACAAATTAGAACAATT-AAGAAACGTAGCATTCGTTTTG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032401 361 + 5179401 ATTAA--------------------GATGTGCATACTTCCTTATAACTTCTACCACACTAGACATTTTATCTAGAAATAAAGGTAAAAAGTACAT------------TTTTC-TTTTTTTTGCCAGAAGTCAATCTGATGTTGTAAAATGTC--ATGTTACCTGTCAG-TA---TAGTG-ATTTTTATGTTTTAAT-TCAAATGCTTTTCAGCTGATGATGCCAAAGTTCAGTAAGAATTTGTGCAGCATTTATATGCCAAGAACTGTATGGAATT-----AAAAA---ATGAGAGATTATAATCTGGT-GGGGAGATACCCATATATGTTGACTATA----GGATAAGTATGGGCGAAACAAGTAAGAGAGGTA--AAACAAATCAGAACAATT-AAGAAACGTAGCATTCGTTTTG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7730020 361 - 21726897 ATTAA--------------------GATACGCGTACTTCCTTATAACTTCTACCACACTAGACATTTTATCTAGAAATAAAGGTAAAAAGTACAC------------TTTTC-TTTTTTTTGCCAGAAGTCAATCTGATGTTGTAAAATGTC--ATGTTACCTGTCAG-TA---TAGTG-ATTTTTATGTTTTAAT-TCAAATGCTTTTCAGCTGATGATGCCAAAGTTCAGTAAGAATTTGTGCAGCATTTATATGCCAAGGACTGTGTGGAATT-----AAAAA---ATGAGAGATTGTAATCTGGT-GAGGAGATACCCATATATGTTGACTGTA----GGATAAGTATGGGCGAAACAAGTAAGAGAGGTA--AAACAAATTAGAACAATT-AAGAAACGTAGCATTCGTTTTG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112547077 354 + 204313951 ATTCA--------------------GATATGCTTACTTCCTTATAACTTTTACTACACTAGACATTTTATCTAGAAATAAAGGT-AAAAGTACAC-------------TTTT-TTTCC----CCAGAAGTCAAGCTGTTGTTGTAAATTGTCATATGCTACCTGTCAG-TA---TAATG-ATTTTTATGTTTTAAT-TCAAATACTTTTCAGCTGGTGATGCCAAAGTTTAATAAGAATTTGCATAGCATTTATATGCCAAGAGCTGTACGGAATT-----AAAAA---TTGGGAGATTGTAATCTGGT-GGGGAGATACCCATGTATACACACCATA----GGAAAGGTATGAGTAAAACAAGTAAGAGAGGTA--AAACAAATTAG---TATT-AAGAAACATAGCATTCATTTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44995366 362 + 71252344 ATTCA--------------------GATATGCTTACTTCCTTATAACTTTTACTACACTAGATATTTTATCTAGAAATAAAGGTAAAAAGTACAC-------------TTTT-TTTTTTTTGCCAGAAGTCAAGCTGTTGTTGTAAATTGTCATATGCTACCTGTCAG-TA---TAGTG-ATTTTTATGTTTTGAT-TCAAAGACTTTTCAGCTGGTGATGCCAAAGGTTAATAAGAATTTACACAGCATTTATATGCCAAGAGCTGTATGGAATT-----AAAAA---CTGGGAGATTGTAATCTGGT-GGGGAGATACCTATATATACTGACTATA----GGAGAGGTATGAGTAAAACAAGTAAGAGAAGTA--AAACAAATTAGAACTATT-AAGAAACGTAGCATTCATTTTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 358080 364 - 1393929 ATTCA--------------------GATATGCTTACTTCCTTATAACTTTTACTACACTAGACATTTTATCTAAAAATAAAGGTAAAAAGTACACTG-----tttttttttt-ttttttttGCCAGAAGTCAAGCTGTTGTTGTCAATTGTCATATGCTACCTGTCAG-TA---TAGTG-ACTTTTATGTTTTAAT-TCAAATACTTTTCAGCTGGTGATGCCAAAGTTTAATAAGAATTTGCACAGTGTTTATATGCCAAGAGCTGTATAGAATT-----AAAAT---TTGGGAGATTGTAATCTGGT-GGGGAGATACTCATATATATTGACTATA----GGAAAGGTGTGAGTAAAACAAGTAAGAGAGGTA--AAACAAAC------TATT-AAGAAATGTAGCATTCATTTTG i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84839724 373 + 108143057 ATTAA--------------------GATATGTTTGTTTCCTTATAACTTCTATTACACTAGAAATTTTATTTAGCAATAAAGGTAAAAAGTACAttgttctttttttttttt-ttttttttACCAAAAGTCAATCTAATGTTGTATAATGCCATATACTACTTATTAG-TC---TAGTGTGTTTTTATTTTTAAAT-TTAAATACTTTTCAGCTGGTGATGCCAAAATTCAGTAGACAATTGTGAAGCATTCATATGCTAAGAGTGGTGTGGAATA-----AAAAA------AGAGATCATACTCTAGT-GGGGAGATACCTACATATGTTGACTATG----GGAAAAGTATGGGTAAAATAAACAAAAGAGGTA--AAAGAAAATAGAACTATT-AAGTAAGGTAGCATTAATTTTG i micMur3.chr12 C 0 I 589 s mm10.chr13 76466932 335 + 120421639 ATTAA--------------------GATATGCTTGATTTCTTATAGCTTCT---ATGCTAAGCATATTATCTAGCAGC-GAGGTAAAAA-TATAC------------TTTTT-TT-------CCTGAAGTAAGTCTGATGTAGTATAATGCCCTATGCCTCCTGTTAG-TG---TAATG---TTGCATTTTTAAATGTAAAATGTATTTTAGTATGTAATGGTAAGGTGCATTAAATATTTGTGCTGTGTTTATATGCTAAAAGCTGTGTGGATTG-----GAAAG---------GATTGTTATCTAGT-GGGGATAT-------TAT----ACTATA----AGGTAAACAGGGGAAATAAATGCAATAGTTTTACCAAAAAAAAAAAAAAGGAA-AAATAGCATAGCATAGATTTTT i mm10.chr13 C 0 I 1 s canFam3.chr3 14327399 367 + 91889043 attaaaaaaaaaaGAATTTCTTCTGAAAATGTTTATTTCCTTATAATTTCTACTGCAATAG-CATTTTATCTAGCAATAAA--------------------------TTTTA-TTTTT---GCTGGGAGTCAATTCAGTGTTGTATAATATCATAAG----CTGTCAG-TT---TATTG----TTTAT-TTTTAAT-GTAAGTGCTTTTCACTTGGTGGTGCCACAATTCAGTGAACATTTGTGCAGCATTTATATGCTAAGAGCTTTGTGGAATTTTTTTAAAAA---GAGGGAGATTGTAAATTAGTAGGGGAAATGCCTATATTTGGTGACTGTATTATGGAAAAGTATGGGTAAAATGGGTAAGAGAGGT---AAACAAAATAGACTAGTTAAAGAAATACAGTATTAATTTTG i canFam3.chr3 I 184 C 0 s dasNov3.JH570378 1257426 270 - 11655695 --------------------------------------------------------------------------------------------------------ttatttta-ttttttttGCCAGAAGCCAATCCTAGGTTGTACTATGTCATGTGTTACGTTCCAGTTA---TAATA-CTTT-----ATTTAAA-ACAA-------------------GCCA---TTCAGTAAACAATTGTGCGGCATTTATAT-TGAAGAGCTGTATGGAATT-----AAAAAAAAATAGGAAGTTGTAATCTAGTAGGAGAGATAGCCGTGTATGTTGACTATAGTATGAATAAGTAGGGGTAAAATGTGTAAGAGAAGTA--AAACAAAATAGAACAATT-AGGAAG-ATAGCATTAATTTG- i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=261927.000000 s hg38.chr5_GL383530v1_alt 56046 27 + 101241 AC-TGAGTCCTTGGAGTAGAGGC---------------------AGTAT s panTro5.chr5 20288921 48 + 181907262 AC-TGAGTCCTTGGAGTAGAGGCAAGGACTTAATAATATTTAATAATAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20301220 48 + 183735486 AC-TGAGTCCTTGGAGTAGAGGCAAGGACTTAATAATATTTAATAATAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4788016 27 - 13748885 AC-TGAGTCCTTGGAGTAGAGGC---------------------AGTAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825048 27 - 163208435 AC-TGAGTCCTTGGACTAGAGGC---------------------AGTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847869 27 - 180051392 AC-TGAGTCTTTGGAGTAGAGGC---------------------AATAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87952294 27 - 181584905 AC-TGAGTCTTTGGAGTAGAGGC---------------------AATAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179783 27 - 8785636 AC-TGAGTCTTTGGAGTAGAGGC---------------------AATAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1643429 27 + 27333823 AC-TGAGTCTTTGGAGTAGAGGC---------------------AATAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1913658 27 - 91010382 AC-TGAGTCTTTGGAGTAGAGGC---------------------AGTAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032762 27 + 5179401 AC-TGAGTCTTTGGAGTAGAGGC---------------------AATAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7730381 27 - 21726897 AC-TGAGTCTTTGGAGTAGAGGC---------------------AGTAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112547431 27 + 204313951 AC-TGAGCCTCTGGAGTAGAGGC---------------------AGTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44995728 28 + 71252344 ACTTGAGGTTCTGGAGTAGAGGC---------------------AGTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 358444 27 - 1393929 AC-TGAGGCTCTGGAGTAGAGGC---------------------AGTAT i cebCap1.NW_016107830v1 C 0 C 0 s mm10.chr13 76467268 27 + 120421639 AC-TAAGGCATTGACATTGAGGT---------------------GATAT i mm10.chr13 I 1 C 0 s canFam3.chr3 14327766 27 + 91889043 AC-TGAGGTTTTGGAGTAGGAGT---------------------GACAT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1257696 27 - 11655695 AC-AGAGGCTTTGGCATAGAGAT---------------------GGTAT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=84868.000000 s hg38.chr5_GL383530v1_alt 56073 13 + 101241 TCAAA----AGAGCTTC s panTro5.chr5 20288969 17 + 181907262 TAAAAAAAGAGAGCTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20301268 17 + 183735486 TAAAAAAAGAGAGCTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4788043 13 - 13748885 TCAAA----AGAGCTTC i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87847896 13 - 180051392 TCAAA----AGAGCTTC i rheMac8.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179810 13 - 8785636 TCAAA----AGAGCTTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1643456 13 + 27333823 TCAAA----AGAgcttc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1913685 13 - 91010382 TCAAA----AGAGCTTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032789 13 + 5179401 TCAAA----AGAGCTTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7730408 13 - 21726897 TCAAA----AGAGCTTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112547458 13 + 204313951 CCAGA----AGAGCGTC i calJac3.chr2 C 0 I 9 s saiBol1.JH378106 44995756 13 + 71252344 CCAGA----AGAGTGTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 358471 13 - 1393929 CCAGA----AGAGCGTC i cebCap1.NW_016107830v1 C 0 C 0 s mm10.chr13 76467295 13 + 120421639 TAAAA----AGAACATT i mm10.chr13 C 0 C 0 s canFam3.chr3 14327793 13 + 91889043 TAAAA----GGAGCTTC i canFam3.chr3 C 0 I 13 s dasNov3.JH570378 1257723 13 - 11655695 TACTA----TGAgcttc i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e macFas5.chr6 87952321 0 - 181584905 C e nomLeu3.chr2 53825075 0 - 163208435 C a score=14976.000000 s hg38.chr5_GL383530v1_alt 56086 2 + 101241 TT s panTro5.chr5 20288986 2 + 181907262 TT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20301285 2 + 183735486 Tt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4788056 2 - 13748885 TT i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87847909 2 - 180051392 TT i rheMac8.chr6 C 0 I 4 s macNem1.NW_012011400v1 1179823 2 - 8785636 TT i macNem1.NW_012011400v1 C 0 I 4 s cerAty1.NW_012002401v1 1643469 2 + 27333823 tt i cerAty1.NW_012002401v1 C 0 I 4 s chlSab2.chr4 1913698 2 - 91010382 TT i chlSab2.chr4 C 0 I 4 s manLeu1.NW_012103732v1 2032802 2 + 5179401 TT i manLeu1.NW_012103732v1 C 0 I 4 s colAng1.NW_012115488v1 7730421 2 - 21726897 TT i colAng1.NW_012115488v1 C 0 I 4 s saiBol1.JH378106 44995769 2 + 71252344 TT i saiBol1.JH378106 C 0 I 10 s cebCap1.NW_016107830v1 358484 2 - 1393929 TT i cebCap1.NW_016107830v1 C 0 I 8 s mm10.chr13 76467308 2 + 120421639 TT i mm10.chr13 C 0 I 390 s dasNov3.JH570378 1257736 2 - 11655695 ct i dasNov3.JH570378 C 0 I 8 e canFam3.chr3 14327806 13 + 91889043 I e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e calJac3.chr2 112547471 9 + 204313951 I e macFas5.chr6 87952321 0 - 181584905 C e nomLeu3.chr2 53825075 0 - 163208435 C a score=2709781.000000 s hg38.chr5_GL383530v1_alt 56088 5259 + 101241 TTttttttaaatattattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgcactgcacccactaacttgtcatctagcattaggtatatctcctaatgctatccctcccccccctccccccaccccacaacagtccccagaatgtgatgttccccttcccgtgtccatgtgttctcattgttcagttcccatctatgagtgagaacatgcggtgtttggttttttgtccttgcgatagtttactgagaatgatgatttccgatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtgtacgtgccacgttttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttgtagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttaaagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagagatgatgagcattttttcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacctacttgtagatggggttgtttgtttttttcttgtaaatttgtttgagttctttgtagattctggatattagccctttgtcaaatgagtaggttgccaaaattttctcccattctgtaggttgcctgttcactctgatggtggtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtaatgcctaggttttcttctagggtttttatgattttaggtctaacgtttaagtctttaatccaccttgaagtaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagcccattttcccagcaccatttattaaatagggaatcctttccccattgcttgtttttctcaggtttgtcaaagatcagatagttgtagatatgtggcattatttctgagggctctgttctgttccattgatctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggattgacttggcgatgcaggctcttttttgtttccatatgaactttcaagtagttttttccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctacaacttaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatcctcttctatttcattgagcagtggtttgtagttctccttgaagaggtctttcacgtcctttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtctgttactggtgtataacaatgcttgtga-ttttgtgcactgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacaatggggttttctagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaactgaataccctttatttccttctcctgcctaattgacctgaccagaatttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccggttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgagatacgtcccgtgaatacctaatttattgagagtttttaacatgaagggttgttgaattttttcaaaggccttttctgcatctattgagataatcatgtggtttttgtctttggttctgtttatatgctggattacatttattgatttgtgtatattgaaccagccttgcatcccagggatgaagcc-cacttgatcatggtggataagctttttgatgtgctgctggattcgg-tttgccagtattttattgaggatttttgcatcaatgttcatcaaggatattggtctaaaattctcttttttggttgtgtctgtgcgcggctttggtatcagtatgatgctggcctcataaaatgagttagggaggattccctctttttctattgattggaatagtttcagaaggaa-tggtaccagttcctccttgtacctctggtagaattcggctgtgaatccatctggtcctggact-ctttttggttggtaagctgttgattattg-ccacaatttcagatcctgttattggtctattcagagattcaatttcctcctggtttagtcttgggagagggta-tgtgtggaggaatttatcca----ttctagattttctagtttatttgcatacaggtgtttgtagtattcgctgatggtagtttgtg-tttctgtgggattg-gtggtgatgtcccctttatcatcttttattgcgtctatttgatttttctctcttttattctttattagtcttgctagcagtctgtcaattttgttgatcctttcaaaaaaccaac-tcctggattcattaattttttgaagggttttttgtgtctctatctccttcagttctcctctgattttggttatttcttgccttctgctagcttttg-aatgtgtttgctcttgcttttctagttcttttaattgtgatattaacctc--tagcaaactccaacagacctgcagctgagggtcctgtctgtcagaaggaaaactaacaaacagaaaggacatccacaccaaaaatccatctgtacatcaccat-catcaaagacc-aaaagtagataaaaccacaaagatgggg-aaaaacagagcagaaaaaactggaaactctaaaaagcagagcacctctcctcctccaaaggaacgcagttcctcaccagcaatgggacaaagctggacggagaatgact-ttgacaagttgagt-gaagaaggcttcag-atgatcaaactactctg-agctacaggaggaaattcaaaccaaaggcaaagaggttgaaaactttgaaaagaatttagacg-aatgtataactagaataaccaatacagagaagtgcttaaagg-agctgatggagctgaaagccaaggctcgagaactat---gtgaagaatgcagaagcctcaggagccgatgtgatcaactggaagaaagggtatcagtgatggaagatgaaatgaattaaatgaagcgagaagggaagtttagagaaaaaagagtaaaaagaaacgaacaaagcctccaagaattatgggactatgtgaaaagaccaaatctacgtctgattgg-tgtacctg-aaagtgacagggagaatggaaccaagttggaaaacactctg-caggatattatccaggagaac-ttcccca-atctag-caaggcaggccaacattcagattcaggaaatacaga-gagtgccacaaagatactcctcgagaagagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttacccacaaagggaagcccatcagactaacagtggatctctcggcagaaactctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttacacacaagcaaatgctgagagattttgtcaccactaggcctgccctaaaagagctcctgaaggaagcactaaacatggaaaggaacaaccggtaccagccgctgcaaaatcatgccaaaatgtagagaccatcgagactaggaagaaactgcgtgaactaacgagcaaaataaccagctaacatcataatgacaggatcaaattcacacatagcaatattaactttaaatgtaaatggactaaatgctccaattaaaagacacagactggcaaattggataaagagtcaagacccatcagtgtgctgtattcaggaaacccatctcacatgcagagacacacataggctcaaaataaaaggatggaggaagatctaccaagcaaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccactacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtcctgagtgacctacaaagagacttagactcccacacaataataatgggagaccttaacaccccactgtcaacattagacagatgaacaagacagaaagttaaaaggatacccaggaattttactcagctctgcaccaagtggacctaatagacatctacagaactctccaccccaaatcaacagaatatacatttttttcagcaccacaccacacctattccaaaattgaccacatacttggaagtaaagctctcctcctcagcaaatgtaaaagaacagaaattataacaaactatctctcagaccacagtgcaatcaaactagaactcaggattaagaaactcactcaaaaccgctcaactacatggaaactgaacaacctgatcctcaatgactgctgggtacataacgaaatgaaggcagaaataaagttgttctttgaaaccaacaagaacaaagacacaacataccagaatctctgggacacattcatagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatccaaaa s panTro5.chr5 20288988 5242 + 181907262 ttttttt--aatattattgtactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgcacccactaactcgtcatctagcattaggtatatctcctaatgctatccct--ccaccctcaccccaccccacaacagtccccagaatgtgatgttccccttcccgtgttcatgtgttctcattgttcagttcccatctatgagtgagaacatgcggtgtttggttttttgtccttgcgatagtttactgagaatgatgatttccgatttcatccatgtccctacaaaggacataaactcatcattttttatggctgcatagtattccatggtgtatacgtgccacgttttcttaatccagtctatcattgctggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttgtagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtgccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcagctgttgtttcctgacttttgaatgatcgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagaaatgatgagcatcttttcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccacttgtagatggggttgtttgtttttttcttgtaaatttgtttgagttcattatagattctggatattagccctttgtcaaatgagtaggttgcaaaaattttctcccattctgtcggttgcctcttcactctgatggtggtttcttttgttgtgcagaagctctttagtttgattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtaatgcctaggttttcttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgagttaatttttgtataaggtgtaaggaagggttccagtttcagctttctacatatggctagccagttttcttagcaccatttattaaatagggaatcctttccccatttcctgtttttctcaggtttgtcaaagatcagatagttgtagacgtgtggtagtatttctgagggctctgttctgttccattggtttatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggattgacttggtgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaagaaagtcattgggagcttgacggggatggcattgaatctataaattacctcgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatcctcttttgtttcgttgagcagtggtttgtagttctccttgaagaggtctttcacgtcctttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttccctcatgatttggctctctgtttgtctgttactggtgtataagaatgcttgtgatttttgcacattgattttatatcctgagactttgctgaagttgcttatcagcttaaggagatttggggctgagacgatggggttttctagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaattgaataccctttatttccttctcctgcctaattgccctggccagaacttccagcactatgttgaataggagtggtgagagagggcatccctgtcttgtgccacttttcaaagggaatgctaccagtatttgcccatttagtatgatattggcagtgggtttgtcatagatagctcttattattttgagatacgtcccatcaatacctaatttattgagagattttagcatgaagggtt-ttgaa-tttatcaaaggcgctttttg-attagttgagataatca--tggtttttgtctttggttctgtttatatgctggattacatttattgatttgcgtatattgaa-cagccttgcatcccaggatggaaaccgcacttgatcatggtggataagctttttgatgtgctgctggattcggctttgccagtattttattgaggatttttgcatcaatgttcatcaaggatatt-gtctaaaattctctttt---gttgtgtctctgcccgctttgcgtatcagtatgatgctggcctcataaaatgagttaggga-gattccctctttttgtattgattggaatagtttcagaaggaattggtacca-ttcctcctt-ta-ctctggtagaa-tcagctgtgaatccatctcgtcctgga---ctttttggtt-gtaagctgttgattattgcccacaatttcagatcctgtatgccgtctattcagagattcaacttcctcctggtttagtc-tgggagagtgtactgtgtcgaggaatttatccatttcttctagattttctagttta-ttgcgtagaggtgtttgtagtattctctgatggtagtttgtattttctgtgggatcgcgtggtgatgtcccctttatcat-ttttattgcgtctatttga-ttttctctctttttttctttattagtcttgctagcggtctatcaa-tttgttgatcctttcaaaaaaccagcttcctggattcattaa-tttttgaaggg-tttttgtgtctgtatcttctttagttct-ctctgattttagttattcct----ttctgctaggttttgtaatgtgtttg--cttgcttttctagttcttttaattgtgatgttaACCTctttagcaaactccaacagacctgcagctgagggtcctgtctgttagaaggaaaactaacaaacataaaggacatccacatccaaaacccatctgtacatcaccatacatcaaagaccaaaaagtagataaaaccacaaagatggggaaaaaacagagataataaaactggaaactctaaaaagtagagtg-ctctcctcctccaaaggaatgcagttcctcaccagcaaacaga-aaagctggactgagaatgactgttgacaag-tgagtcgaagaaggcttcagaatgatcaaactactccgaagctacaggaggaaattcaaaccaaaa--agagaagttgaaaactttgaaaagaatttagacgaaatgtataactagaa-aaccaatacagagaagtgcttaaaggaagctgatggagctgaagcccaaggctcgagaactatcgactgaagaatgcagaagcctca-gagccgatgtgatc-actggaagaaagggtatcagt-atggaagatgaaatgaattaaatgaagcgagaagggaagtttagag-aaaaagaataaaaagaaatgaacaaagcctccaagaattatgggactatgtgaaaa-accaaatctacgtctgattggttgtacctgaaaagtgacagggagaatggaa-caag-tggaaaacattctgccaggatattatccaggagaactttccccacatctagccaaggcacggcaacattcagattcatggaatacagacgaatgccac-aagatactcct-gag-agagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttacccacaaagggaagcccatcagactaacagcggatctctcggcagaaactctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattgtcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccactaggcctgccctaaaatagctcctgaaggaagcactaaacgtggaaaggaacaaccagtaccagccacttcaaaatcatgccaaaatgtaaagaccatcgagactaggaagaaactgcatcaactaacgagcaaaataaccagctaacatcataatgacaggatcaaattcacacatagcaatattaactttaaatgtaaatggactaaatgcttcaattaaaagacacagactggcaaattggataaagagtcaagacccatcagtgtgctgtattcaggaaacccatctcttgtgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaaacaaaaaacggcaggggttgcaatcctagtctctgataaagcaggctttaaaccaacaaagatcaaaagagacaaagaaggccactacctaatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtcctgagtgacctacaaagagacttagactcccacacaataataatgggagaccttaacaccccactgtcaacattagacagatcaacgagacagaaagttaaaaggatacccaggaattttactcaactctgcaccaagtggacctaatagacatctacagaactctccaccccaaatcaacagaatataaatttttttcagcaccacaccacacctattccaaaattgaccacatacttcgaagtaaagctctcctcctcagcaaatgtaaaagaacagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaagaaactcactcaaaaccgctcaattacatggaaactgaacaacctgatcctcagtgactactgggtacataatgaaatgaaggcagaaataaagttgttctttgaaaccaacaagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaaaatccaaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20301287 5259 + 183735486 tttttt---aatattattatactttaagctttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgcacccactaactcgtcatctagcattaggtatatctcctaatgctatccct--ccaccctcaccccaccccacaacagtccccagaatgtgatgttccccttcccgtgttcatgtgttctcattgttcagttcccatctatgagtgagaacatgcggtgtttggttttttgtccttgcgatagtttactgagaatgatgatttccgatttcatccatgtccctacagaggacatgaactcatcattttttatggctgcatagtattccatggtgtatacgtgccacattttcttaatccagtctatcattgctggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttgtagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtgccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgacttttgaatgatcgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagaaatgatgagcatcttttcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccacttgtagatggggttgtttg-ttttttcttgtaaatttgtttgagttcattatagattctggatattagccctttgtcaaatgagtaggttgcaaaaattttctcccattctgtcggttgcctgttcactctgatggtggtttcttttgttgtgcagaagctctttagtttacttagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgagttaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttcttagcaccatttattaaatagggaatcctttccccatttcctgtttttctcaggtttgtcaaagatcagatagttgtagacgtgtggtagtatttctgagggctctgttctgttccattggtttatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggattgacttggtgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaagaaagtcattgggagcttgacggggatggcattgaatctataaattacctcgggcagtatggccattttcacgatattgattcttcctacccatgagcatggattgttcttccatttgtttgtatcctcttttgtttcgttgagcagtggtttgtagttctccttgaagaggtctttcacgtcctttgtaagttggattcctaggtattttgttctctttgaagcaattgtgaatgggagttccctcatgatttggctctctgtttgtctgttactggtgtataagaatgcttgtgatttttgcacattgattttatatcctgagactttgctgaagttgcttatcagcttaaggagatttggggctgagacgatggggttttctagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaactgaataccctttatttccttctcctgcctaattgccctggccagaacttccagcactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgctaccagtttttgcccatttagtatgatattggcagtgggtttgtcatagatagctcttattattttgagatacgtcccatcaatacctaatttactgagagattttagcatgaagggtt-ttgaattttgtcaaaggccttttctgcatctattgagataatcatgtggtttttgtctttggttctgtttatatgctggattacatttattgatttgcgtatattgaaccagccttgcatcccagggatgaagcc-cacttgatcatggtggataagctttttgatgtgctgctggattcgg-tttgccagtattttattgaggatttttgcatcaatgttcatcaaggatattggtctaaaattctcttttttggttgtgtctctgcccggctttggtatcagtatgatgctggcctcataaaatgagttagggaggattccctctttttctattgattggaatagtttcagaaggaa-tggtaccagttcctccttgtacctctggtagaattcggctgtgaatccatctggtcctggactcttttttggttggtaagctattgattattg-ccacaatttcagatcctgttactggtctattcagagattcaacttcctcctggtttagtcttgggagagtgta-tgtgtcgaggaatttatccatttcttctagattttctagtttatttgcgtagaggtgtttgtagtattctctgatggtagtttgta-tttctgtgggatcg-gtggtgatgtcccctttatcattttttattgcgtctatttgatttttctctctttttttctttattagtcttgctagcggtctatcaattttgttgatcctttcaaaaaaccagc-tcctggattcattaattttttgaagggttttttgtgtctgtatcttctttagttctcctctgattttagttatttcttgccttctgctagcttttg-aatgtgtttgctcttgcttttctagttcttttaattgtgatgttaacctc--tagcaaactccaacagacctgcagctgagggtcctgtctgttagaaggaaaactaacaaacagaaaggacatccacaccaaaaacccatctgtacatcaccat-catcaaagacc-aaaagtagataaaaccacaaagatggggaaaaaacagagcagagaaaactggaaactctaaaaagtagagcgcctctcctcctccaaaggaatgcagttcctcaccagcaacagaacaaagctggacggagaatgact-ttgacaagttgagt-gaagaaggcttcag-atgatgaaactactccg-agctacaggaggcaattcaaaccaaaggcagagaagttgaaaactttgaaaagaatttagacg-aatgtataactagaataaccaatacagagaagtgcttaaagg-agctgatggagctgaaagccaaggctcgagaactat---gtgaagaatgcagaagcctcaggagccgatgtgatcaactggaagaaagggtatcagtgatggaagatgaaatgaattaaatgaagcgagaagggaagtttagagaaaaaagaataaaaagaaatgaacaaagcctccaagaattatgggactatgtgaaaagaccaaatctacgtctgattgg-tgtacctg-aaagtgacagggagaatggaaccaagttggaaaacattctg-caggatattatccaggagaac-ttcccca-atctag-caaggcaggccaacattcagattcaggaaatacaga-gaatgccacaaagatactcctcgagaagagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttacccacaaagggaagcccatcagactaacagcggatctctcggcagaaactctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattgtcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccactaggcctgccctaaaatagctcctgaaggaagcactaaacgtggaaaggaacaaccagtaccagccactgcaaaatcatgccaaaatgtaaagaccatcgagactaggaagaaactgcatcaactaacgagcaaaataaccagctaacatcataatgacaggatcaaattcacacatagcaatattaactttaaatgtaaatggactaaatgcttcaattaaaagacacagactggcaaattggataaagagtcaagacccatcagtgtgctgtattcaggaaacccatctcttgtgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaaacaaaaaacggcaggggttgcaatcctagtctctgataaagcaggctttaaaccaacaaagatcaaaagagacaaagaaggccactacctaatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtcctgagtgacctacaaagagacttagactcccacacaataataatgggagaccttaacaccccactgtcaacattagacagatcaacgagacagaaagttaaaaggatacccaggaattttactcagctctgcaccaagtggacctaatagacatctacagaactctccaccccaaatcaacagaatataaatttttttcagcaccacaccacacctattccaaaattgaccacatacttcgaagtaaagctctcctcctcagcaaatgtaaaagaacagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaagaaactcactcaaaaccgctcaactacatggaaactgaacaacctgatcctcagtgactactgggtacataatgaaatgaaggcagaaataaagttgttctttgaaaccaacaagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaaaatccaaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4788058 5245 - 13748885 tttttttaaaatattattatactttaagatttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgcacccattaactcgtcatctagcattaggtatatctcctaatgctatccct--cccccctccccccaccccacaacagtccccagaatgtgatgttccccttcccgtgtccatgtgttctcattgttcagttcccacctacgagtgagaacatgcggtgtttggttttttgtccttgcgatagtttactgagaatgatgatttccgatttcatccatgtccctacacaggacatgaactcatcattttttatggctgcatagtattccatggtgtatacgtgccacgttttcttaatccagtctatcattgctggacatttgggttggttccaagactttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtctttatagtagcatgatttataatcctttgggtatatagccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcaccacactgacttccacaatggttgaactagtttaccgtcccacc-acagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattcaaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccacttgtagatggggttgt----ttttttcttgtaaatttgtttgagttcatggtagattctggatattagccctttgtcaaatgagtaggttgccaaaattttctcccattctgtaggttgcctgttcactctgatggtggtttcttttgctgtgcagaagctctttagtttgattagatcacatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcgtatgtcctgaatggtaatgcctaggtttttttctagggtttttatggttttaggtctaacgtttaagtctttaatccatcttgaattaatttttgtataagttgtaaggaagggatccagtttcagctttctgcatatggctagccagttttcccagcaccatttgttaaatagggaatcctttccccattgcttgtttttctcaggtttgtcaaagatcagatagttgtagatatgcggcattatttctgagggctctgttctgttccattgatctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgttcttttggcttaggattgacttggcgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaagaaagtcattggta-tttgatggggatggcattgaatctataaattaccttgggaagtatggccattttcacgatattgattcttcctacctatgagcatggaatgttcttccatttgtttgtatcctcttttgtttcattgagcagtggtttgtagttctccttgaagaggtctttcac-tcctttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtctgttactggtgtataagaatgcttgtgattgttgtgcattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacaatggggttttctagatatacgatcatgtcatctgcaaacagggacaatttgacttccacttttcctagttgaataccctttatttccttctcctgcctaattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctctcttgtgccagttttccaagggaatgcttccagtttttgcccattcagtatgatattggcagtgggtttgtcatagatagctcttattattttgagatacgtcccatcaatacctaatttattgagaatttttagcatgaagggttgttgaattttgtcaaaggccttttctgcatctattgagataatcatgtggtttttgtctttggttctgtttatatgctggattatgtttattgatttgcgtatattgaagcagccttgcatcccagggatgaagcc-cacttgatcatggtggataagctttttgatgtgctgctggcttcgg-tttgccagtattttattgaggatttttgcatcaatgttcatcaaggatattggtctaaaatactcttttttggttgtggctctgcccggctttggtatcag-atgatgctggcctcataaaatgagttagggaggattccctctttttctattgattggaatagtttcagaaggaa-tggtaccagttcctccttgtacctctggtagaatttggctgtgaatccatctggtcctggact-ctttttgtttggtaagctgttgattattg-ccacaatttcagatcctgttattggtctattcagagattccacttcctcctggtttagtcttgggag-gtgta-tgtgtcgaggaatttatccatttcttctagattttctagtttatttgcgtagaggtgtttgtagtattctctgatggtagtttgta-tttctgtgggatcg-gtggtgatgtcccctttatcattttttattgcgtctatttgatttttctctctttttttctttattagtcttgctagca-tctatcaattttgttgatcctttcaaaaaaccagc-tcctggattcattaattttttgaagggttttttgtgtctctatctccttcagttctcctctgattttagttatttcttgccttctgctagcttttg-aacgtgtttgctcttgcttttctagttcttttaattgtgatgttaacctc--tagcaaactccaacagacctgcagctgagggtcctgtctgttagaaggaaaactaacaaacagaaaggacatccacaccaaaaacccatctgtacatcaccat-catcaaagacc-aaaagtagataaaaccacaaagatggggaaaaaacagagcagaaaaaactggaaacactaaaaagcagagcacccctcctcctccaaaggaacgcagttcctcaccagcaacggaacaaagctggacggagaatgact-ttgacaagttgaga-gaagaaggcttcag-atgatcaaactactccg-agctacaggaggaaattcaaaccaaaggcaaagaagttgaaaactttgaaaaaaatttagacg-aatgtataactagaataaccaatacagagaagtgcttaaagg-agctgatggagctgaaagccaaggctcgagaactat---gtgaagaatgcagaagcctcaggagccgatgtgatcaactggaagtaagggtatcagtgatggaagatgaaatgaattaaatgaagcgagaagggaggtttagagaaaaaagaataaaaagaaatgaacaaagcctccaagaattatgggactatgtgaaaagaccaaatctacatctgattgg-tgtacctg-aaagtgacagggagaatggaaccaagttggaaaacactctg-caggatattatccaggagaac-ttcccca-atctag-caaggcaggc---cattcagattcaggaaatacgga-gaatgccacaaagatactcctcgagaagagcaactccaagacacataattctcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagacaggtcgggttacccacaaagggaagcccatcagactaacagcggatctctcagcagaaactctacaagccag-agagagtgggggcc-atattcaacattcttaaagaaaagaattttcaacccagaatttcatatccagccaaactaagcttcagaagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccactaggcctgccctaaaagagctcctgaaggaagcactaaacgtggaaaagaacaaccagtaccagccgctgcaaaatc-tgccaaaatgtaaagaccatcgagactaggaagaaactg-gtgaactaacgagcaaaataaccagctaacatcataatgacaggatcaaattcacacataacaatattaactttaaatgtaaatggactaaatgctccaattaaaagacacagactggaaaattggataaagagtcaagacccatcagtgtgctgtattcaggaaacccatctcacgtgcagagacacacataggctcaaaataaaaggatggaggaagatctaccaagcaaatagaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccactacataattgtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcaaccaatacaggagcacccagattcataaagcaagtcctgagtgacctacaaagagacttagactcccacacaataataatgggagaccttaacaccccactgtcaacattagacagatcaacgagacagaaagttaaaaggatacccaggaattttactcagctctgcaccaagtggacctaatagacatctacagaactctccaccccaaatcaacagaatatacatttttttcagcaccacaccacacctattccaaaattgaccacatacttggaagtaaagctctcctcctcagcaaatgtaaaagaacagaaattataacaaactgtctctcagaccacagtgcaat-aaactagaactcaggattaagaaactcactcaaaaccgctcaactacatggaaactgaacaacctgatcctcaatgactactgggtacataacgaaatgaaggcagaaatagagttgttctttgaaaccaacaagaacaaagacacaacataccagagtctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaatatccaaaa i gorGor5.CYUI01014999v1 C 0 C 0 e canFam3.chr3 14327806 13 + 91889043 I e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1257738 8 - 11655695 I e mm10.chr13 76467310 390 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 358486 8 - 1393929 I e saiBol1.JH378106 44995771 10 + 71252344 I e calJac3.chr2 112547471 9 + 204313951 I e colAng1.NW_012115488v1 7730423 4 - 21726897 I e manLeu1.NW_012103732v1 2032804 4 + 5179401 I e chlSab2.chr4 1913700 4 - 91010382 I e cerAty1.NW_012002401v1 1643471 4 + 27333823 I e macNem1.NW_012011400v1 1179825 4 - 8785636 I e macFas5.chr6 87952321 0 - 181584905 C e rheMac8.chr6 87847911 4 - 180051392 I e nomLeu3.chr2 53825075 0 - 163208435 C a score=15815.000000 s hg38.chr5_GL383530v1_alt 61347 13 + 101241 tCAAAAGAGCTTC s panTro5.chr5 20294230 12 + 181907262 tC-AAAGAGCTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20306546 13 + 183735486 tCAAAAGAGCTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4793303 13 - 13748885 tCAAAAGAGCTTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825075 13 - 163208435 TCAAAAGAGCTTC i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87952321 13 - 181584905 TCAAAAGAGCTTC i macFas5.chr6 C 0 C 0 e canFam3.chr3 14327806 13 + 91889043 I e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1257738 8 - 11655695 I e mm10.chr13 76467310 390 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 358486 8 - 1393929 I e saiBol1.JH378106 44995771 10 + 71252344 I e calJac3.chr2 112547471 9 + 204313951 I e colAng1.NW_012115488v1 7730423 4 - 21726897 I e manLeu1.NW_012103732v1 2032804 4 + 5179401 I e chlSab2.chr4 1913700 4 - 91010382 I e cerAty1.NW_012002401v1 1643471 4 + 27333823 I e macNem1.NW_012011400v1 1179825 4 - 8785636 I e rheMac8.chr6 87847911 4 - 180051392 I a score=1179.000000 s hg38.chr5_GL383530v1_alt 61360 1 + 101241 T s panTro5.chr5 20294242 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 20306559 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4793316 1 - 13748885 T i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825088 1 - 163208435 T i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87952334 1 - 181584905 T i macFas5.chr6 C 0 I 5 s calJac3.chr2 112547480 1 + 204313951 C i calJac3.chr2 I 9 C 0 e canFam3.chr3 14327806 13 + 91889043 I e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1257738 8 - 11655695 I e mm10.chr13 76467310 390 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 358486 8 - 1393929 I e saiBol1.JH378106 44995771 10 + 71252344 I e colAng1.NW_012115488v1 7730423 4 - 21726897 I e manLeu1.NW_012103732v1 2032804 4 + 5179401 I e chlSab2.chr4 1913700 4 - 91010382 I e cerAty1.NW_012002401v1 1643471 4 + 27333823 I e macNem1.NW_012011400v1 1179825 4 - 8785636 I e rheMac8.chr6 87847911 4 - 180051392 I a score=19110.000000 s hg38.chr5_GL383530v1_alt 61361 2 + 101241 TA s panTro5.chr5 20294243 2 + 181907262 TA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20306560 2 + 183735486 TA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4793317 2 - 13748885 TA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825089 2 - 163208435 TA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847915 2 - 180051392 TA i rheMac8.chr6 I 4 C 0 s macFas5.chr6 87952340 2 - 181584905 TA i macFas5.chr6 I 5 C 0 s macNem1.NW_012011400v1 1179829 2 - 8785636 TA i macNem1.NW_012011400v1 I 4 C 0 s cerAty1.NW_012002401v1 1643475 2 + 27333823 ta i cerAty1.NW_012002401v1 I 4 C 0 s chlSab2.chr4 1913704 2 - 91010382 TA i chlSab2.chr4 I 4 C 0 s manLeu1.NW_012103732v1 2032808 2 + 5179401 TA i manLeu1.NW_012103732v1 I 4 C 0 s colAng1.NW_012115488v1 7730427 2 - 21726897 TA i colAng1.NW_012115488v1 I 4 C 0 s calJac3.chr2 112547481 2 + 204313951 TA i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107830v1 358494 2 - 1393929 TA i cebCap1.NW_016107830v1 I 8 C 0 s dasNov3.JH570378 1257746 2 - 11655695 ta i dasNov3.JH570378 I 8 C 0 e canFam3.chr3 14327806 13 + 91889043 I e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76467310 390 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e saiBol1.JH378106 44995771 10 + 71252344 I a score=10920.000000 s hg38.chr5_GL383530v1_alt 61363 1 + 101241 A s panTro5.chr5 20294245 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 20306562 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4793319 1 - 13748885 A i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825091 1 - 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847917 1 - 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87952342 1 - 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179831 1 - 8785636 A i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1643477 1 + 27333823 a i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1913706 1 - 91010382 A i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032810 1 + 5179401 A i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7730429 1 - 21726897 A i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112547483 1 + 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44995781 1 + 71252344 A i saiBol1.JH378106 I 10 C 0 s cebCap1.NW_016107830v1 358496 1 - 1393929 A i cebCap1.NW_016107830v1 C 0 C 0 s dasNov3.JH570378 1257748 1 - 11655695 a i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14327806 13 + 91889043 I e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76467310 390 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=10424.000000 s hg38.chr5_GL383530v1_alt 61364 1 + 101241 T s panTro5.chr5 20294246 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 20306563 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4793320 1 - 13748885 T i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825092 1 - 163208435 C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847918 1 - 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87952343 1 - 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179832 1 - 8785636 T i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1643478 1 + 27333823 t i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1913707 1 - 91010382 T i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032811 1 + 5179401 T i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7730430 1 - 21726897 T i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112547484 1 + 204313951 T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44995782 1 + 71252344 T i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 358497 1 - 1393929 T i cebCap1.NW_016107830v1 C 0 C 0 s canFam3.chr3 14327819 1 + 91889043 T i canFam3.chr3 I 13 C 0 s dasNov3.JH570378 1257749 1 - 11655695 t i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76467310 390 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=1218178.000000 s hg38.chr5_GL383530v1_alt 61365 127 + 101241 GTTCAGACAAAACCTTGAAAGATAATTGGGACCGGTGT-GGGAACATTCCAGGGACAGGTATGTGATGAAGTGGCCTAACATG---AGTTAAAGTTTAGCCACTGGTGAACCCCAGATATATTCAGAAGCA s panTro5.chr5 20294247 127 + 181907262 GTTCAGACAAAACCTTGAAAGATAATTGGGACCAGTGT-GGGAACATTCCAGGGACAGGTATGTGATGGAGTGGCCTAACATG---AGTTAAAGTTTAGCCACTGGTGAACCCCAGATATATTCAGAAGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20306564 127 + 183735486 GTTCAGACAAAACCTTGAAAGATAATTGGGACCAGTGT-GGGAACATTCCAGGGACAGGTATGTGATGGAGTGGCCTAACATG---AGTTAAAGTTTAGCCACTGGTGAACCCCAGATATATTCAGAAGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4793321 127 - 13748885 GTTAAGACAAAACCTTGAAAGATAATTGGGACCTGTGT-GGGAACATTCCAGGGACAGGTCTGTGATGGAGTGGCCTAACATG---AGTTAAAGTTTAGCCACTGGTGAACCCCAGATATATTCAGAAGCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825093 127 - 163208435 GTTCAGACAAAACCTTGAAAGATAATTGGGACTGGTGT-GGGAACATTCCAGGGACAGGTATGTGATGGAGTGGCCTAACATG---AGTTAAAGCTTAGCCACTGGTGAACCCCAGATATATTCAGAAGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87847919 127 - 180051392 GTTCAAACAAGACCTTGAAAGATAATTGGGACCAGTGT-GGAAACATTCCAGGGACAGGTATGTGATGGAGTGGCCTAACAGG---AATTAAAGTTTAGCCACTGGTGAGCCCCAGATATATTCAGAAACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87952344 127 - 181584905 GTTCAAACAAGACCTTGAAAGATAATTGGGACCAGTGT-GGAAACATTCCAGGGACAGGTATGTGATGGAGTGGCCTAACAGG---AATTAAAGTTTAGCCACTGGTGAGCCCCAGATATATTCAGAAACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179833 127 - 8785636 GTTCAAACAAGACCTTGAAAGATAATTGGGACCAGTGT-GGAAACATTCCAGGGACAGGTATGTGATGGAGTGGCCTAACAGG---AATTAAAGTTTAGCCACTGGTGAGCCCCAGATATATTCAGAAACA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1643479 127 + 27333823 gtttaaacaagaccttgaaagataattgggaccagtgt-ggaaacattccagggacaggtatgtgatggagaggcctaacagg---aattaaagtttagccactggtgagccccagatatattcagaaaca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1913708 127 - 91010382 GTTCAAACAAGACCTTGAAAGATAATTGGGACCAGTGT-GGGAACATTCCAGGGACAGGTATGTGATGGAGTGGCCTAACATG---AATTAAAGTTTAGCCACTGGTGAGCCcctgatatattcagaaaca i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032812 127 + 5179401 GTTCAAACAAGACCTTGAAAGATAATTGGGACCAGTGT-GGAAACATTCCAGGGACAGGTATGTGATGGAGTGGCCTAACAGG---AATTAAAGTTTAGCCACTGGTGAGCCCCAGATATATTCAGAAACA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7730431 127 - 21726897 GTTCAAACAAGACCTTGAAAGATAATTGCGACCAGTGT-GGGAACATTCCAGGAACAGGTATGTGATGGAGTGGCCTAACATG---AATTAAAGTTTAGCCACTGGTGAGCCCCAGATATATTCAGAAACA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112547485 97 + 204313951 GTTCAAGCAAGACCTTGAAAGATAATTGAGACTGGTGT-GGAAACA------------------------------TAACAGG---AGTTAAAGTGTAGCCACTGGCAAACCCCAGATATATTAAGAAGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44995783 97 + 71252344 GTTCAAACAAGACCTTGAAAGATAATTGAGACTGGTGT-GGAAACA------------------------------TAACATG---AGTTAAAGTGTAGCCACTGGCAAACCCCAGATATATTCAGAAGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 358498 98 - 1393929 GTTCGAACAAGACCTTGAAAGATAATTGAGACCggtgtgggaaaca------------------------------taacatg---agttaaagtgtagccactggcaaaccccaaatatattcagaggca i cebCap1.NW_016107830v1 C 0 C 0 s mm10.chr13 76467700 125 + 120421639 gtacaGATAGGAACTGAAAAAACAGTTAAGA-----GT-GGGGATTTTCCAAGTGTGAGTATGTGATGGGGTGGTCTCACAGAGATGATTAAAATGTAGCCGCTGTCAAGTTATAGGTATTTGGGGAAGTA i mm10.chr13 I 390 C 0 s canFam3.chr3 14327820 126 + 91889043 GTTTAAACAGGACCTTGAAAGATAAATAGGA-TAGGGT-GGGAATGTTCCAGGTATGGGTTGGTGGTGAAGTTGCCTAACATG---AATTAAGGTGTAGCTATTGGTGAATCTTAGGTATATTCAGAAACA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1257750 124 - 11655695 atgtaaacaggccttgaaaagataattagaacaagggt-gggaacattccaggtatgggTTTATGGTGA---GGTCTAACATG---GGTTACCACATGGCCATCGGTGAGCTTCAGGTATGTTTGGAAGCA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=1407894.000000 s hg38.chr5_GL383530v1_alt 61492 153 + 101241 TAGAATAATCCAGTTTTATGGCAAATAGACTTTTAGGGGAAATTACTCTTTACTAAAAGAGTAAATTGAGA-CTGGATCATGGATGGCATTGAAAGTTGTGCTATGGAATCTTGACTTAATTCTGTGGATTATAGGGATTCTCTGAAAGTTTTT s panTro5.chr5 20294374 153 + 181907262 TCGAATAATCCAGTTTTATGGGAAATAGACTTTTAGGGGAAATTACTCTTTACTAAAAGAGTAAATTGAGA-CTGGATCATGGATGGCATTGAAAGTTGTGCTATGGAATCTTGACTTAATTCTGTGGATTACAGGGATTCTCTGAAAGTTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20306691 153 + 183735486 TCGAATAATCCAGTTTTATGGGAAATAGACTTTTAGGGGAAATTACTCTTTACTAAAAGAGTAAATTGAGA-CTGGATCATGGATGGCATTGAAAGTTGTGCTATGGAATCTTGACTTAATTCTGTGGATTACAGGGATTCTCTGAAAGTTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4793448 153 - 13748885 TTGAATAATCCAGTTTTATGGGAAACAGACTTTTAGGGGAAATTACTCTTTACTAAAAGAGTAAATTGAGA-CTGGATCATGGATGGCATTGAAAGTGGTGCTATGGAATCTTGACTTAATTCTGTGGATTATAGGGATTCTCTGAAAGTTTTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825220 151 - 163208435 TCAAATAATCCAGCTTTACGGGAAATAGACTTATAGGGGAAATTACTCTTTACTaaa--agtaaattgaga-ctggatcatggatggcgttgaaagttgtgctatggaatctggacttaattctgtggattatggggattgtctgaaagttttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87848046 142 - 180051392 TCAAATAATCCAGTTTTAGGGGAAATGGACTTTTAGGGGAAATTACTCTTTACTA-----------Tgaga-ccagatcatggacagcattgaaggttgtgctgtggaatctggacttcattctgtggattatggggattctctgcaagttttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87952471 142 - 181584905 TCAAATAATCCAGTTTTAGGGGAAATGGACTTTTAGGGGAAATTACTCTTTACTA-----------Tgaga-ccagatcatggacagcattgaaggttgtgctgtggaatctggacttcattctgtggattatggggattctctgcaagttttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1179960 142 - 8785636 TCAAATAATCCAGTTTTAGGGGAAATGGACTTTCAGGGGAAATTACTCTTTACTA-----------Tgaga-ccagatcatggacagcattgaaggttgtgctgtggaatctggacttcattctgtggattatggggattctctgcaagttttt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1643606 153 + 27333823 tcaaataatccagttttaggggaaatggacttttaggggaaattactctttactaaaagagtaaattgaga-ccagatcatggacagcattgaaggttgtgctgtggaatctggacttcattctgtggattatggggattctctgcaagttttt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1913835 154 - 91010382 tcaaataatccagttttagaggaaatggacttttaggggaaattactctttactaaaagagtaaattgagacccggatcatggatggcattgaaggttatgctatggaatctggacttcattctgtggattatggggattctctgcaagttttt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2032939 153 + 5179401 TCAAATAATCCAGTTTTAGGGGAAATGGACTTTTAGGGGAAATTACTCTTTACTAaaagagtaaattgaga-ccagatcatggacagcattggaggttgtgctgtggaatctggacttcattctgtggattatggggattctctgcaagttttt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7730558 152 - 21726897 TCAAATAATCCAGTTTTAGGGGAAATGGACTTTTAGGGGAAATTACTCTTTACTAaaagagtaaattgaga-ccagatcgtggatggcattgaaggttgtgctatggaatctggacttcattctgtggattat-gggattctctgcaagttttt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112547582 153 + 204313951 TCAAATAATCCAGTATTAGGGGAAATGGACTTTTAGGGGAAATTACTCTTTCCTAAAAAAGGAAATTgaga-ccggatcatggacagtattgaaggttgtgctatggaatctggacttcattctgtggattatggggattctctgaaagttttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44995880 153 + 71252344 TCAAATAATCCAGTTTTAGGGGAAATGGACTTTTAGGGGAAATTACTCTTTACTaaaaaagtaaattggga-ccagatcatggacatcattgaaggttgtgctgtggaatctggacttcattctgtagattatggggattctctgaaagttttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 358596 153 - 1393929 tcaaataatccagttttaggggaaattgacttttaggggaaatttctctttactaaaaaagtaaattgaga-ccggatcatggacagcattggagattgtgctatgaaatctggacttcattctatggattatggggattctctgaaagttttt i cebCap1.NW_016107830v1 C 0 C 0 s canFam3.chr3 14327946 112 + 91889043 TCAAATAATCCATATTTTGG-----------------------------------------TAAATTGATG-CCAGACTATGCAAAGGGTTGAAGGCTGTGCTGAGGAATCTGGACTTTATTTTGTGAATATTGGGGATTCTCTGAAGGCTTTT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1257874 127 - 11655695 GCAAATAATCCATTTgtaaaagaagc--------------------------ctgaaggaataacttgaag-ccagaccatggacagggtgacaggctctgctaaatagtctggacttcattttgtgaattatggggattctctgaaggctttt i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76467825 0 + 120421639 C e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=726450.000000 s hg38.chr5_GL383530v1_alt 61645 83 + 101241 GAGTATAGGAATAATC--TTTAAGAGCAATAACTCTGCTAACAGTAGAAAAACTGTAGGTGTGACAGAAGGAGAGAG-GGAGGAAA s panTro5.chr5 20294527 83 + 181907262 GAGTATAGGAATAATC--TTTAAGAACAATAACTCTGCTACCAGTAGAAAAACTGTGGGTGTGACAGAAGGAGAGAG-GGAGGAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20306844 83 + 183735486 GAGTATAGGAATAATC--TTTAAGAACAATAACTCTGCTACCAGTAGAAAAACTGTAGGTGTGACAGAAGGAGAGAG-GGAGGAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4793601 83 - 13748885 GACTATAGGAATAATC--TTTAAGAACAATAACTCTGCTAACAGTAGAAAAACTGTAGATGTGACAGAAGGAGAGAG-GGAAGAAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825371 83 - 163208435 gagtataggaataatc--tttaagaacaataactctgctaacagtagaaaaactgtaggtgtaacagaaggagagag-ggaggaaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87848188 85 - 180051392 gagtacaggaattatcgttttaagaacaataactctgctaacagtagaaaaactgtaggtgtgacagaaggagggag-ggaggaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87952613 85 - 181584905 gagtacaggaattatcgttttaagaacaataactctgctaacagtagaaaaactgtaggtgtgacagaaggagggag-ggaggaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1180102 85 - 8785636 gagtacaggaattatcgttttaagaacaataactctgctaacagtagaaaaactgtaggtgtgacagaaggagggag-ggaggaaa i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1643759 85 + 27333823 gagtacaggaattatcgttttaagaacaataactctgctaacagtagaaaaactgtaggtgtgacagaaggagggag-ggaggaaa i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1913989 85 - 91010382 gagtacaggaattatcgttttaagaacaataactctggtaacagtagaaaaactgtaggtgtgacagaaggagggag-ggaggaaa i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2033092 85 + 5179401 gagtacaggaattatcgttttaagaacaataactctgctaacagtagaaaaactgtaggtgtgacagaagcagggag-ggaggaaa i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7730710 85 - 21726897 gagtacaggaattatcattttaagaacaataactctgctaacagtagaaaaactgtaggtgtgacagaaggagggag-ggaggaaa i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112547735 81 + 204313951 gagtataggaatAGTT--TTTAAGAACAACAACTCTGCTGACAGTAGGAAAAATGTACATGTGAC---AGGTGAGAGTGAAGTTAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44996033 77 + 71252344 gagtataggaataatt--tttaag---aataactccgctgacagtaggaaaaatgtatgtgtgac---aggagagag-ggaggaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 358749 80 - 1393929 gagtataggaatcatt--tttaagaacaacaactccgctgacagtaggaaaaatgtacgtgtgac---aggagagag-ggaggaaa i cebCap1.NW_016107830v1 C 0 I 719 s mm10.chr13 76467825 80 + 120421639 GAGGAGAGGAG-GATA--TATGAAATTAACAGCT--GGTGCCAACAGAAAGGAATCAGGAGAGAAGGAAGTAGAAAG-GGAATACA i mm10.chr13 C 0 C 0 s canFam3.chr3 14328058 76 + 91889043 GAATAGAGAAATAACC--TATAAAGACAGTAACA--GATGACAATAGGAAAGATATAGGTGAGAACG-AGAAAGGAG-GAAG---- i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1258001 79 - 11655695 gggtagaggTACAATA--TTTCATAACAA----TCTGATGACAGTAGGAAGGATATAGGAGAGAAAGAAAGGGCAGG-AGGGTAAA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=120303.000000 s hg38.chr5_GL383530v1_alt 61728 16 + 101241 AGAGAGGGGCCAGGCA s panTro5.chr5 20294610 16 + 181907262 AGAGAGGGGCCAGGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20306927 16 + 183735486 AGAGAGGGGCCAGGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4793684 16 - 13748885 AGAGAGGGGCCAGGCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825454 16 - 163208435 agagaggggccaggca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87848273 14 - 180051392 --agagggaccaggca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87952698 14 - 181584905 --aGAGGGACCAGGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1180187 14 - 8785636 --agagggaccaggca i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1643844 14 + 27333823 --agagggaccaggca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1914074 14 - 91010382 --aGAGGGACCAGGCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2033177 14 + 5179401 --agagggaccaggca i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7730795 14 - 21726897 --agagggaccaggca i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112547816 14 + 204313951 --GTAGGGACCAGGCC i calJac3.chr2 C 0 I 699 s saiBol1.JH378106 44996110 14 + 71252344 --gtagggaccagGCC i saiBol1.JH378106 C 0 C 0 s mm10.chr13 76467905 13 + 120421639 ---AAAGGACCAGGCA i mm10.chr13 C 0 C 0 s canFam3.chr3 14328135 16 + 91889043 AAGAGGGGCCCAGTCA i canFam3.chr3 I 1 C 0 s dasNov3.JH570378 1258080 13 - 11655695 ---AGGTGAGAAGGCA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 358829 719 - 1393929 I a score=46943.000000 s hg38.chr5_GL383530v1_alt 61744 7 + 101241 AAGGGAA s panTro5.chr5 20294626 7 + 181907262 AAGGGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20306943 7 + 183735486 AAGGGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4793700 7 - 13748885 AAGGGAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825470 7 - 163208435 aagggaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87848287 7 - 180051392 aatggaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87952712 7 - 181584905 AATGGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1180201 7 - 8785636 aatggaa i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1643858 7 + 27333823 aatggca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1914088 7 - 91010382 AATGGAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2033191 7 + 5179401 aatggaa i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7730809 7 - 21726897 aatgtaa i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112548529 7 + 204313951 AAGGGAT i calJac3.chr2 I 699 C 0 s saiBol1.JH378106 44996124 7 + 71252344 AAGAGAA i saiBol1.JH378106 C 0 I 697 s mm10.chr13 76467918 7 + 120421639 CAGAGAA i mm10.chr13 C 0 C 0 s canFam3.chr3 14328151 7 + 91889043 CATAGAG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1258093 7 - 11655695 CATGGAG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 358829 719 - 1393929 I a score=6599.000000 s hg38.chr5_GL383530v1_alt 61751 2 + 101241 -AT s panTro5.chr5 20294633 2 + 181907262 -AT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20306950 2 + 183735486 -AT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4793707 2 - 13748885 -AT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825477 2 - 163208435 -at i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87848294 2 - 180051392 -at i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87952719 2 - 181584905 -AT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1180208 2 - 8785636 -at i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1643865 2 + 27333823 -at i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1914095 2 - 91010382 -AT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2033198 2 + 5179401 -at i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7730816 2 - 21726897 -at i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112548536 2 + 204313951 -AT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44996828 2 + 71252344 -AT i saiBol1.JH378106 I 697 C 0 s mm10.chr13 76467925 1 + 120421639 -G- i mm10.chr13 C 0 C 0 s canFam3.chr3 14328158 2 + 91889043 -AT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1258100 2 - 11655695 AA- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 358829 719 - 1393929 I a score=531547.000000 s hg38.chr5_GL383530v1_alt 61753 59 + 101241 ATTTCTTAG--------------------------------------------------------------GAAAACACA----------------------AATAGTTCAGAG----ACCATGGACTAAGTTGAGA--CTATTGATAA s panTro5.chr5 20294635 59 + 181907262 ATTTCTTAG--------------------------------------------------------------GAAAACACA----------------------AATAGTTCAGAG----ACCATGGACTAAGTTGAGA--CTATTGATAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20306952 59 + 183735486 ATTTCTTAG--------------------------------------------------------------GAAAACACA----------------------AATAGTTCAGAG----ACCATGGACTAAGTTGAGA--CTATTGATAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4793709 59 - 13748885 ATTTCTTAG--------------------------------------------------------------GAAAACACA----------------------AATAGTTCAGAG----ACCATGGACTAAGTTGAGA--CTATTGATAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825479 59 - 163208435 atttcttag--------------------------------------------------------------gaaaataca----------------------agtagttcagag----actatggactaagttgaga--ctattgataa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87848296 59 - 180051392 atttcttag--------------------------------------------------------------gaaaataca----------------------agtagttcagag----accacggactaagttgaga--ctattgataa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87952721 59 - 181584905 ATTTCTTAG--------------------------------------------------------------GAAAATACA----------------------AGTAGTTCAGAG----ACCACGGACTAAGTTGAGA--CTATTGATAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1180210 59 - 8785636 atttcttag--------------------------------------------------------------gaaaataca----------------------agtagttcagag----accacggactaagttgaga--ctattgataa i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1643867 59 + 27333823 atttcttag--------------------------------------------------------------gaaaataca----------------------agtagttcagag----accacggactaagttgaga--ctattgataa i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1914097 59 - 91010382 ATTTCTTAG--------------------------------------------------------------GAAAATACA----------------------AGTAGTTCAGAG----ACCATGGACTAAGTTGAGG--CTATTGATAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2033200 59 + 5179401 atttcttag--------------------------------------------------------------gaaaataca----------------------agtagttcagag----accacggactaagttgaga--ctattgataa i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7730818 59 - 21726897 atttcttag--------------------------------------------------------------gaaaataca----------------------agtagttcagag----accatggactaagttgagg--ctattgataa i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112548538 59 + 204313951 ATTTCTTAG--------------------------------------------------------------GAAAATACA----------------------AGTAGTTCAGAG----ACCATGGACTAAGTTGAGA--CTCATGATAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44996830 59 + 71252344 ATTTCTTAG--------------------------------------------------------------GAAAATACA----------------------AGTAGTTCAGAG----ACCATGGACTAAGTTGAGA--CTCATGATAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 359548 59 - 1393929 ATTTCTTAG--------------------------------------------------------------GAAAATACA----------------------AGTAGTTCAGAG----ACCATGGACTAAGTTGAGA--CTCATGATAA i cebCap1.NW_016107830v1 I 719 C 0 s mm10.chr13 76467926 41 + 120421639 ---------------------------------------------------------------------------ACATG----------------------GAGAGCCC-GAG----GTGGTGGCCTAAGTTGAGA--CAGTTA---- i mm10.chr13 C 0 C 0 s canFam3.chr3 14328160 65 + 91889043 ATTTCTTGG--------------------------------------------------------------GAGGCTACA----------------------GGTAGTTCAGAGAGAAACAGTGGATTAAAATGAGAAGTTCATGATAA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1258102 138 - 11655695 AATTTTTAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAGGTGAGAAGGCACATGAGAAAATTTTTAGAAGCTACAGTAG-TCAGAG----AAAAT-GACTAAA-TGAGA--AAGTCTGT-- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84840097 589 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=1844558.000000 s hg38.chr5_GL383530v1_alt 61812 165 + 101241 GAAAGAATTTC---TGAGTAATGTAACTGGTGTTTCATGGCTGATTGGCC-----AGGGAAGAGGAAAAGAGGACAAGAGGAGGCGGCAAAACTTTCTCCCCTCAATGTTTTGACTTAGTTACTGGAAGAATAGTGATGCTATTAGCCAAAGTCAAGAATGTTGGAAGACAAT s panTro5.chr5 20294694 165 + 181907262 GAAAGAATTTC---TGAGTAATGTAACTGGTGTCTCATGGCTGATTGGCC-----AGGGAAGAGGAAAAGAGGAAAAGAGGAGGCAGCAAAACTTTCTCCCCTCAATGTTTTGACTTAGTTACTGGAAGAATACTGATACTATTAGCCAAAGTCAAGAATGTTGGAAGACAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20307011 165 + 183735486 GAAAGAATTTC---TGAGTAATGTAACTGGTGTCTCATGGCTGATTGGCC-----AGGGAAGAGGAAAAGAGGAAAAGAGGAGGCAGCAAAACTTTCTCCCCTCAATGTTTTGACTTAGTTACTGGAAGAATACTGATACTATTAGCCAAAGTCAAGAATGTTGGAAGACAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4793768 165 - 13748885 GAAAGAATTTC---TGAGTAATGTAACTGGTGTCTCATGGCTGATTGGCC-----AGGGAAGAGGAAAAGAGGAAAAGAGGAGGCGGCGAAACTTTCTTCCCTCAATGTTTTGACTTAGTTACTGGAAGAATAGTGATGCTATTAGCCAAAGTCAAGAATGTTGGAAGACAAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825538 165 - 163208435 gaaagaatttc---tgagttatgtaactggtgtctcatggctgattggcc-----agggaaggggaaaagaggtaaagaggaggtggcaaaactttctcccctcaatgtttcgacttagttactggaagaatagtgatgccattagccaaagtcaagaatgttggaagacaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87848355 165 - 180051392 gaaagaatttc---tgagtaatataactggtatctcatggctgattgtcc-----agggaaggggaaaagaggaaaagaggaggtggcaaaactttctcccctcaatgttttgacttagttactggaaggatagtgatgctattagccaaagtcaagaatgttggaaggcaat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87952780 165 - 181584905 GAAAGAATTTC---TGAGTAATATAACTGGTATCTCATGGCTGATTGTCC-----AGGGAAGGGGAAAagaggaaaagaggaggtggcaaaactttctcccctcaatgttttgacttagttactggaaggatagtgatgctattagccaaagtcaagaatgttggaaggcaat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1180269 165 - 8785636 gaaagaatttc---tgagtaatataactggtatctcatggctgattgtcc-----agggaaggggaaaagaggaaaagaggaggtggcaaaactttctcccctcaatgttttgacttagttactggaaggatagtgatgctattagccaaagtcaagaatgttggaaggcaat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1643926 165 + 27333823 gaaagaatttc---tgagtaatataactggtatctcatggctgattgtcc-----agggaaggggaaaagaggaaaagaggaggcggcaaaactttctcccctcaatgttttgacttagttagtggaaggatagtgatgctattagccaaagtcaagaatgttggaaggcaat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1914156 165 - 91010382 GAAAGAATTTC---TGAGTAATGTAACTGGTATCTCATGGCTGATTGTCC-----AGGGAAGGGGAAAAgaggaaaagagaaggcggcaaaactttctcccctcaatgttttgacttagttactggaaggatagtgatgctattagccaaagtcaagaatgttggaaggcaat i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2033259 165 + 5179401 gaaagaatttc---tgagtaatataactggtatctcatggctgattgtcc-----agggaaggggaaaagaggaaaagaggaggcggcaaaactttctcccctcaatgttttgacttagttactggaaggatagtgatgctattagccaaagtcaagaatgttggaaggcaat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7730877 165 - 21726897 gaaagaatttc---tgagtgatgtaactgatatctcatggctgattgtcc-----agggaaggggaaaagaggaaaagaggaggcggcaaaactttctcccctcaatgttttgacttagttactggaaggatagtgatgctattagccaaagtcaagaatgttggaaggcaat i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112548597 154 + 204313951 GAAAGAACTTC---TGAGTAATGTAACTGGTGTCTCATGGCTGATTGGCC-----AGGGAaggggaaaagtgga-----------gtcaaaactatctcccctcaatgtttggacttagttactagaagaatggtgatgctattagccgaagtcaagaatgttggaagacaat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44996889 154 + 71252344 GAAGGAATTTC---TGAGTAATGTGACTGGTGTCTCATGTCTGATTGGCC-----AGGGAaggggaaaagtgga-----------gacaaaactttctcccctcaatgtttggacttagttactagaagaatagtgatgctattagccaaagtcaagaatgttggaagacaat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 359607 154 - 1393929 GAAAGAATTTC---TGAGTAATATAACTGGTGTCTCATGGCTGATTGGCC-----AGGGAaggggaaaagtgga-----------gtcaaaactttctcccctcaatgtttggacttagttactagaagaatagtgatgctattagccaaagtcaagaatgttggaagacaat i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84840686 153 + 108143057 GAAAGGATTTC---TGAGTAATGTAACTGG-GTCTCACGGCTGATTGCTC-----AGGGAaggggaaaagagga-----------gccaaaactttctcccctcaatattttgacttagttactggaagagtggtaatgctatttgttagaattaggaatgttggaagacaat i micMur3.chr12 I 589 C 0 s mm10.chr13 76467967 152 + 120421639 GAACTGCCCTA---TGAGTAATACAGATGGATTCTGGTGACTGACTTT--------GGAACAGAAACAGGAGAGAGAGTATCAGTGGCA---------CCTTTTGATAATTT-ACCTAGTAGCTAGAAGTATAGTAGTATTGTAAACTAATACAGGAAATGCTGGAAGACAAC i mm10.chr13 C 0 C 0 s canFam3.chr3 14328225 165 + 91889043 TAATGGGTATC---TGAGTAACATAGCTGGGGTTTGATGGCTGATTGGACACCAAAGAGAAGGAGTAAAGAGGAAAAGAGAGG--AGTCGAACATTTTCTTCTTAGCATTTTGACTTTGTCCCTGGAA---TGGTGATGCTCTTAGCTAAAGGTAGGAATTTTGGAAGACAGC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1258240 163 - 11655695 GAAATGATTTCCTTTTGGAAATATAGCTGA-GTCTGATG-CTGATTGTCC-----GGGAAGTTTGAAAAGAGAA---GGGAAAGAGTCAAAACTCTCTCCCCTCAATATTTTGACCTGATCACTGGGTCAGTGATGATGCTGTAAGGCAACATTGACAATATTGGAAGATAAT i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=787512.000000 s hg38.chr5_GL383530v1_alt 61977 73 + 101241 TGGGGATGATACAATTCCCTTTTGGTCATGCTATA--TG-------GGATTAGTGGGATGTTCTTGTGGGGAAATCAAGCTC s panTro5.chr5 20294859 74 + 181907262 TGGGGATGATACAATTCCCTTTTGGTCATGCTATA--TG------AGGATTAATGGGATGTTTTTGTGGGGAAATCAAGCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20307176 74 + 183735486 TGGGGATGATACAATTCCCTTTTGGTCATGCTATA--TG------AGGATTAATGGGATGTTTTTGTGGGGAAATCAAGCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4793933 74 - 13748885 TGGGGATGATACAATTCCCTTTTGGTCATGCTATA--TG------AGGATTAGTGGGATGTTCTTGTGGGGAAATCAAGCTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825703 74 - 163208435 tgggggtgacacaattcccttttgatcatgctaTA--TG------AGGATTAGTGGGATGTTCTTGTGAGGAAATCAAGCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87848520 74 - 180051392 tggggatgatacaattcccttttggtcatgttaTA--TG------AGGATTAGTGGGATCTTCTTGTGGGGAAATCAAGCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87952945 74 - 181584905 tggggatgatacaattcccttttggtcatgttaTA--TG------AGGATTAGTGGGATCTTCTTGTGGGGAAATCAAGCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1180434 74 - 8785636 tggggatgatacaattcctttttggtcatgttaTA--TG------AGGATTAGTGGGATCTTCTTGTAGGGAAATCAAGCTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1644091 74 + 27333823 tggggatgatacaattcccttttggtcatgttata--tg------aggattagtgggatgttcttgtggggaaatcaagCTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1914321 74 - 91010382 tggggatgatacaattcccttttggtcatgttaTA--TG------AAGATTAGTGGGATGTTCTTTTGGGGAAATCAAGCTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2033424 74 + 5179401 tggggatgatacaattcccttttggtcatgttata--tg------aggattagtgggatgttcttgtggggaaatcaagCTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7731042 74 - 21726897 tggggatgatacaattcccttttgatcgtgttaTA--CG------AGGATTAGTGGGATGTTCTTGTGGGGAAATCAAGCTC i colAng1.NW_012115488v1 C 0 I 325 s calJac3.chr2 112548751 74 + 204313951 tggggatgatacaattattttttggtcatgttaTA--TG------AGGATTAGTGAGATGTTGTTGTGGGGAAATCAAGCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44997043 74 + 71252344 tggggatgatacaattctttttcggtcatgttatg--tg------aggattagtgagatgttcttgtggggaaatcaagCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 359761 74 - 1393929 tggggatgatgcaattcttttttggtcatgttaTA--TG------AGGATTAGTGAGTTGTTCTTGTGGGGTAATCAAGCTC i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84840839 74 + 108143057 tgagaaagataaaattttattttggtcatattaTA--TG------AGGATTAGTGGGATGTTTTTGTGGGGCAATCAAGTTC i micMur3.chr12 C 0 C 0 s mm10.chr13 76468119 75 + 120421639 ACTGAATAAAAC-ATTCACATTTGGTCATGCTATA--GGATGGAGAGGATTGGTGAG----TTTTGTGGAACAATCAAATTC i mm10.chr13 C 0 C 0 s canFam3.chr3 14328390 73 + 91889043 AGGTGAATAAAAAGTTCCATCTTGGTCCTATTGTACGTG------GGAATTAGTGGTATG-TCCTGTGGAGCAGTCATGC-- i canFam3.chr3 C 0 C 0 e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=38352.000000 s hg38.chr5_GL383530v1_alt 62050 3 + 101241 AAG s panTro5.chr5 20294933 3 + 181907262 AAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20307250 3 + 183735486 AAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4794007 3 - 13748885 AAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825777 3 - 163208435 AAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87848594 3 - 180051392 AAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87953019 3 - 181584905 AAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1180508 3 - 8785636 AAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1644165 3 + 27333823 AAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1914395 3 - 91010382 AAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2033498 3 + 5179401 AAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7731441 3 - 21726897 AAG i colAng1.NW_012115488v1 I 325 C 0 s calJac3.chr2 112548825 3 + 204313951 AAG i calJac3.chr2 C 0 I 322 s saiBol1.JH378106 44997117 3 + 71252344 AAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 359835 3 - 1393929 AAG i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84840913 3 + 108143057 AAG i micMur3.chr12 C 0 C 0 s mm10.chr13 76468194 3 + 120421639 AAG i mm10.chr13 C 0 C 0 e canFam3.chr3 14328463 0 + 91889043 C e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=1088854.000000 s hg38.chr5_GL383530v1_alt 62053 105 + 101241 AATTGTGGTGGAAGTAAGAGTGATAAAGGTCTG-TTTATG----------------TT--GTGTCTTCATACATTTGaaggaaac----agat--at--gtggagcaattgcaggagaagaaaggcaaagag s panTro5.chr5 20294936 121 + 181907262 AGTGGTGGTGGAAGTAAGAGTGATAAAGTTCTG-TATATGTTGTGTCTTCATACATTT--GTGTCTTCATACATTTGAAGGAAAC----ACAT--AT--GTggagcaattgcaggagaagaaaggcaaagag i panTro5.chr5 C 0 C 0 s panPan2.chr5 20307253 121 + 183735486 AGTGGTGGTGGAAGTAAGAGTGATAAAGTTCTG-TATATGTTGTGTCTTCATACATTT--GTGTCTTCATACATTTGAAGGAAAC----ACAT--AT--GTggagcaattgcaggagaagaaaggcaaagag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4794010 121 - 13748885 AGTTGTGGTGGAAGTAAGAGTGATAAAGGTCTG-TATATGTTGTGTCTTCATACATTT--GTGTCTTCATACATTTGAAGGAAAC----ACAT--AT--GTggagcaattgcaggagaagaaaggcaaagag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825780 117 - 163208435 AGTTGTGGTGGAAATAAGAGTGATAAAGGTCTG-TATATGTTGTGTCTTCATACATTT--GTGTCTTCATACATTTGAAGGAAAC----AC----AT--GTGGAGCAATTGCAGGAGAAGAAAGGCAA--AG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87848597 105 - 180051392 AGTTGTGGTGGAAGTAAGAGTGATAAAGGTCTA-TATATG----------------TT--GTGTCTTCATACATTTGAAGGAAAC----ACAT--AT--GTGGAGCAATTGCAGGAAAAGAAAGGCAAAGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87953022 105 - 181584905 AGTTGTGGTGGAAGTAAGAGTGATAAAGGTCTA-TATATG----------------TT--GTGTCTTCATACATTTGAAGGAAAC----ACAT--AT--GTGGAGCAATTGCAGGAAAAGAAAGGCAAAGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1180511 105 - 8785636 AGTTGTGGTGGAAGTAAGAGTGATAAAGGTCTA-TATATG----------------TT--GTGTCTTCATACATTTGAAGGAAAC----ACAT--AT--GTGGAGCAATTGCAGGAAAAGAAAGGCAAAGAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1644168 105 + 27333823 AGTTGTGGTGGAAGTAAGAGTGATAAAGGTCTA-TATATG----------------TT--GTGTCTTCATACATTTGAAGGAAAC----ACAT--AT--GTGGAGCAATTGCAGGAAAAGAAAGGCAAAGAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1914398 105 - 91010382 AGTTGTGGTGGAAGTAAGAGTGATAAAGGTCTA-TATATG----------------TT--GTGTCTTCATACATTCGAAGGAAAC----ACAT--AT--GTGGAGCAATTGCAGGAGAAGAAAGGTAAAGAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2033501 105 + 5179401 AGTTGTGGTGGAAGTAAGAGTGATAAAGGTCTA-TATATG----------------TT--GTGTCTTCATACATTTGAAGGAAAC----ACAT--AT--GTGGAGCAATTGCAGGAAAAGAAAGGCAAAGAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7731444 105 - 21726897 AGTTGTGGTGGAAGTAAGAGTGATAAAGGTCTA-TATATG----------------TT--GTGTCTTCATACATTTGAAGGAAAC----ACAT--AT--GTggagcaattgcaggagaagaaaggcaaagag i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112549150 105 + 204313951 AGTTGTGGTGGAAGTAAGAGTTATAAAGGTCTA-TGTATG----------------TT--GTGTCTTCATACATTTGAAGGAAAC----ATAT--AT--GTGGAGCAATTGCAGGAGAAGAAAGGCAAAGAG i calJac3.chr2 I 322 C 0 s saiBol1.JH378106 44997120 103 + 71252344 AGTTGTGGTGGAAGTAAGAGTTATAAAGATCTA-TATATG----------------TT--GTGTCTTCATACATTTGaaggaaac------at--at--gtggagcaattgcaggagaagaaaggcaaagag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 359838 103 - 1393929 AGTTGTGGTGGAAGTAAGAGTTATAAAGATCTA-CATACG----------------AT--GTGTCTTCATACAATTGaaggaaac------ac--at--gtggagcaattgcaggagaagaaaggcaaagag i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84840916 111 + 108143057 AGCTGTGGTTAGAGCAAGAGTGATAAAGGTCTA-GATATG----------------TTACATGTCTTCGTAAAATTGAAGGAAATCCTTATAT--AG--ATGGAGCAATTGCAGGAGAACAAAGGCAAAGAG i micMur3.chr12 C 0 I 285 s mm10.chr13 76468197 107 + 120421639 AGGAATGGTCAAAACAATCCCCATGCAGGCTAGCTATATG----------------AA--GTGCCTTCCTTAAATTGAAGCAAAC----AGATGCAT--ATGGGACGATTACAAACGAA-AAACGCAAGAGG i mm10.chr13 C 0 I 2 s canFam3.chr3 14328463 108 + 91889043 -ATTGTGATAAAAGTTACATTGATAAAGGTCTA-GATATG----------------TTAAATGTCTTCCTAACATTGGAGAAAAC----ATAT--ATAAAGGGAACAATTATAGCAAAATGAGGACAAAAAG i canFam3.chr3 C 0 C 0 e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=1629475.000000 s hg38.chr5_GL383530v1_alt 62158 160 + 101241 atgac--aga--acagggtcatgagaagaaacagattaaagaaggaaggaatggtaaatagtgttggatggtatagattagaaaagtggattga-aaattgagagttctttggctttgctgattaatggatcattggtgactttcaagaaggtgatttcTAGATA s panTro5.chr5 20295057 160 + 181907262 atgac--aga--acagggtcatgagaagaaacagattaaagaaggaaggaatggtaaatagtgttggatggtatatattagaaaagtgggttga-aaattgagaattctttggctttgctgattaatggatcattggtgactttcaagaaggtgatttcTAGATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20307374 160 + 183735486 atgac--aga--acagggtcatgagaagaaacagattaaagaaggaaggaatggtaaatagtgttggatggtatatattagaaaagtggattga-aaattgagaattctttggctttgctgattaatggatcattggtgactttcaagaaggtgatttcTAGATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4794131 160 - 13748885 atgac--aga--acagggtcatgagaagaaacagattaaagaaggaaggaatggtaaatagtgttggatggtatagattagaaaagtggattga-aaattgagaattctttggctttgctgattaatggatcattggtgactttcaagaaggtgatttctagata i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53825897 160 - 163208435 ATGAC--AGA--ACAGGGACATGAgaagaaacagattaaagaaggaaggaatggtaaacagtgttggatgctagaggttagaaaagtggattga-agattgagaattctttggctttgctgattaatggatcattggtgactttcaagaAGATGATTTCTAGATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87848702 160 - 180051392 ATAAC--AGA--ACAGGgtcatgagaagaaacagattaaagaaggaaggaatggtaaacagtgttggatgatatagattagagaagtggattga-aaattgagaattctttggctttgctgattagtggatcattggtgactttcaagaaagtgatttcTAGATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87953127 160 - 181584905 ATAAC--AGA--ACAGGgtcatgagaagaaacagattaaagaaggaaggaatggtaaacagtgttggatgatatagattagagaagtggattga-aaattgagaattctttggctttgctgattagtggatcattggtgactttcaagaaagtgatttcTAGATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1180616 160 - 8785636 ATAAC--AGA--ACAGGgtcatgagaagaaacagattaaagaaggaaggaatggtaaacagtgttggatgatatagattagagaagtggattga-aaattgagaattctttggctttgctgattagtggatcattggtgactttcaagaaagtgatttcTAGATA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1644273 160 + 27333823 ATGAC--AGA--ACAGGgtcatgagaagaaacagattaaagaaggaaggaatggtaaacagtgttggatgatatagattagagaagtggattga-aaattgagaattctttggctttgctgattagtggatcattggtgactttcaagaaagtgatttcTAGATA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1914503 160 - 91010382 ATGAC--AGA--ACAGGgtcatgagaagaaacagattaaagaaggaaggaatggtaaacagtgttggatgatatagattagagaagtggattga-aaattgagaattctttggctttgcggattagtggatcattggtgactttcaagaaagtgatttcTAGGTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2033606 160 + 5179401 ATGAC--AGA--ACAGGgtcatgagaagaaacagattaaagaaggaaggaatggtaaacagtgttggatgatatagattagagaagtggattga-aaattgagaattctttggctttgctgattagtagatcattggtgactttcaagaaagtgatttcTAGATA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7731549 160 - 21726897 atgac--aga--acagggtcatgagaagaaacagattaaagaaggaaggaacggtaaacagtgttggatgatatagattagagaagtggattga-aaattgagaattctttggctttgctgattagtggatcattggtgactttcaagaaagtgttttcTAGATA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112549255 156 + 204313951 ATGAC--AGA--ACAAGGTCGTGAgaagaaacagatt----aaggaatgaatggtaaacagtgttggatgctatagattatagaagtggattga-aaattgagaattctttgactttgctgattaatggatcgttcgtgactttcaagacagtGATTTCTAGATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44997223 160 + 71252344 atgac--aga--acagggtcatgagaagaaacagattaaaaaaggaaggaatggtaaacagtgttggatgctatagatgagagaagtggattga-aaattgagaattctttgactttgctgataaatggatcattggtgactttcaagatagtgatttctagatg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 359941 160 - 1393929 atgac--aca--acagggtcatgagaagaaacagattaaagaaggaaggaatggtaaacagtgttggatgctatagattagagaagtggattga-aaattgagaattctttgactttgctgattaatggatcattggtgactttcaagacagtGATTTCTAGATA i cebCap1.NW_016107830v1 C 0 C 0 s mm10.chr13 76468306 154 + 120421639 ACAAC--AGAGGGCAGGGACATGAGAAAAATC--TCTAAACA---AACAAATGGCAAACAGCA--GAATGTTACAGGTTGGAAAAGTAGATTTACCAACTGGGGATTCATTGGCTTTCCC--TTAAAGGAGCCCCGGGAACTTTCAAGAATTTAATTACTAGATA i mm10.chr13 I 2 I 10897 s canFam3.chr3 14328571 149 + 91889043 ATGACGGAGA--ACAGGGTCATGAAaacaaa-------------gaaggaacagttcacaatgacgcatgctattgattggaaaagtggattga-aacttgagaactcattgacttttctgaataatatatcatcagtgccttataaaaaagtaatttTAAGGTA i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841027 285 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=3370220.000000 s hg38.chr5_GL383530v1_alt 62318 389 + 101241 AGCAAGAATAGTCCATTGAAATAGCATCAAAACTAAGGATAATACATATGTTCTAGAAC-----TTTTTTT-TTTTTTTTCTGAAAGGGTTGAAGATGAACAGGTTTGGTATCTC-TTTTTTGTCCTACACTGTGGTTC-TTGATTCCTAACACCCATTATagaggcatgggttgagggctggttgaagttccagctcctctgcttgtatgttcctgctcatgttatttaaaccctcaaaaccaaagtttcttcatctgctaaataaaaataat---atatttacctcttagattgtcaggaatgagctaaaacatgggaaaatatttcataaactataaaat-actTCTGTAC-AGTGTTGCTGTTACAATATCTGTATTGACTTTTGATGAAGTGGTAAA s panTro5.chr5 20295217 392 + 181907262 AGCAAGAATAGTCCATTGAAATAGCATCAAAACTAAGGATAATACATATATTTTAGAAC--tttttttttt-ttttttttCTGAAAGGGTTGAAGATGAACAGGTTTGGTATCTC-TTTTTTGTCCTACACTGTGGTTC-TTGATTCCTAACACCCATTATAGAGGCATGGGTTCAGGGCTggttgaagttccagctcctctgcttgtatgttcctgctcatgttatttaaatcctcaaaaccaaagtttcttcatctgctaagtaaaaataat---atatttacctcttagattgtcaggaatgagctaaaacatgggaaagtatttcataaactataaaat-actTCTGTAC-AGTGTTGCTGTTACAATATCTGTATTGACTTTTGATGAAGTGGTAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20307534 394 + 183735486 AGCAAGAATAGTCCATTGAAATAGCATCAAAACTAAGGATAATACATATATTCTAGAACtttttttttttt-tttttcttCTGAAAGGGTTGAAGATGAACAGGTTTGGTATCTC-TTTTTTGTCCTACACTGTGGTTC-TTGATTCCTAACACCCATTATAGAGGCATGGGTTCAGGGCTggttgaagttccagctcctctgcttgtatgttcctgctcatgttatttaaaccctcaaaaccaaagtttcttcatctgctaagtaaaaataat---atatttacctcttagattgtcaggaatgagctaaaacatgggaaagtatttcataaactataaaat-actTCTGTAC-AGTGTTGCTGTTACAATATCTGTATTGACTTTTGATGAAGTGGTAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4794291 392 - 13748885 agcaagaatagttaattgaaatagCATCAAAACTAAGGATAATACATATGTTCTAGAAC--tttttttttt-ttttttttCTGAAAGGGTTGAAGATGAATAGATTTGGTATCTC-TTTTTTGTCCTACACTGTGGTTC-TTGATTCCTAACACCCATTATAGAGGCATGGGTTCAGGGCTggttgaagttccagctcctctgcttgtatgttcctgctcatgttatttaaaccctcaaaaccaaagtttcttcatctgctaaataaaaataat---atatttacctcttagattgtcaggaatgagctaaaacatgggaaagtatttcataaactataaaat-actTCTGTAC-AGTGTTGCTGTTACAATATCTGTATTGACTTTTGATGAAGTGGTAAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53826057 391 - 163208435 AGCAAGAATAGTCAATTGAAATAGCATCAAAACTAAGGATAATACATATGTTCTAGAAC---TTTTTTTTT-CTTTTTTCCTGAAAGGGTTGAAGATGAACAGGTTTGGTATCTC-TTTTTTGTCCTACACTGTGGTTC-TCGATTCCCAACACCCATTGTAGAGGCATGGGTTCAGGGCTggttgaagttccagctcctctacttgtatgttcctgctcatgttatttaaaccctcaaaaccaaagtttcttcatctgctaaataaaaataat---atacttacctcttagattgtcaggaatgagttaaaacatgggaaagtatttcataaactataaagt-actTCTGTAC-AGTGTTGCTGTTACAATATCTGTATTGACTTTTGATGAAGTGGTAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87848862 381 - 180051392 AGCAAGAATAGTCAATTGAAATAGCATCAAAACTAAGGATAATACATATGTTCTAGAAC-------CCCTT-TTTATTTCCTGAAAGGGTTGAAGATGAATAGGTTTG-----TC-TTTTTTGTCCTACACTGTGGTTC-TTGATTCCTAACACCCATTGTAGAGGCATGGGTTCAGGGCTggttgaagttccagctcctctacttgtatgttccttctcatgttatttaaaccctcaaaaccaaagtttcttcatctgataaataaaaataat---atatttacctcttagattgttaggaattagctaaaacatgggaaagtatttcataaa-tataagga-acttctgtac-aGTGTTGCTGTTACAATATATGTATTGACATTTGATGAAGTGGTAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87953287 381 - 181584905 AGCAAGAATAGTCAATTGAAATAGCATCAAAACTAAGGATAATACATATGTTCTAGAAC-------CCCTT-TTTATTTCCTGAAAGGGTTGAAGATGAATAGGTTTG-----TC-TTTTTTGTCCTACACTGTGGTTC-TTGATTCCTAACACCCATTGTAGAGGCATGGGTTCAGGGCTggttgaagttccagctcctctacttgtatgttccttctcatgttatttaaaccctcaaaaccaaagtttcttcatctgataaataaaaataat---atatttacctcttagattgttaggaattagctaaaacatgggaaagtatttcataaa-tataagga-acttctgtac-aGTGTTGCTGTTACAATATATGTATTGACATTTGATGAAGTGGTAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1180776 381 - 8785636 AGCAAGAATAGTCAATTGAAATAGCATCAAAACTAAGGATAATACATATGTTCTAGAAC-------CCCTT-TTTATTTCCTGAAAGGGTTGAAGATGAATAGGTTTG-----TC-TTTTTTGTCCTACACTGTGGTTC-TTGATTCCTAACACCCATTGTAGAGGCATGGGTTCAGGGCTggttgaagttccagctcctctacttgtatgttccttctcatgttatttaaaccctcaaaaccaaagtttcttcatctgataaataaaaataat---atatttacctcttagattgttaggaattagctaaaacatgggaaagtatttcataaa-tataagga-acttctgtac-aGTGTTGCTGTTACAATATATGTATTGACATTTGATGAAGTGGTAAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1644433 381 + 27333823 AGCAAGAATAGTCAATTGAAATAGCATCAAAACTAAGGATAATACATATGTTCTAGAAC-------CCCTT-TTTATTTCCTGAAAGGGTTGAAGATGAATAGGTTTG-----TC-TTTTTTGTCCTACACTGTGGTTC-TTGATTCCTAACACCCATTGTAGAGGCATGGGTTCAGGGGTggttgaagttccagctcctctacttgtatgttccttctcatgttatttaaaccctcaaaaccaaagtttcttcatctgataaatagaaataat---atatttacctcttagattgttaggaattagctaaaacatgggaaagtatttcataaa-tataagga-acttctgtac-aGTGTTGCTGTTACAATATATGTATTGACATTTGATGAAGTGGTAAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1914663 385 - 91010382 AGCAAGAATAGTCAATTGAAATAGCATCAAAACTAAGGATATTACATATGTTCTAGAAC-------CCCTT-TTT-TTTCCTGAAAGGGTTGAAGATGAATAGGTTTGGTACCTC-TTTTTTGTCCTACACTGTGGTTC-TTGATTCCTAACACCCATTGTAGaggcatgggttcagggctgcttgaagttccaactcctctacttgtatgttcctgctcatgttatttaaaccctcaaaaccaaagtttcttcatctgataaataaaaataat---atatttacctcttagattgtcaggaattagctaaactatgggaaagtatttcataaa-tataaagt-acttcggtac-agtgttgctgttacaATATATGTATTGACATTTGATGAAGTGGTAAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2033766 380 + 5179401 AGCAAGAATAGTCAATTGAAATAGCATCAAAACTAAGGATAATACATATGTTCTAGAAC-------CCCTT-TTTATTTCCTGAAAGGGTTGAAGATGAATAGGTTTG-----TC-TTTTTTGTCCTACACTGTGGTTC-TTGATTCCTaacacgcattgtagaggcatgggttcagggctggttgaagttccagctcctctacttgtatgttcctgctcatgttatttaaaccctcaaaaccaaagtttcttcatctgataaataaaaataat---atatttacctcttagattgttaggaattagctaaaacatgggaaagtatttcataaa-tataaagt-acttctgtac-agtgttgctgttacaATATATGTATTGACATTTGATG-AGTGGTAAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7731709 381 - 21726897 AGCAAGAATAGTCCATTGAAATAGCATCAAAACTAAGGATAATACATATGTTCTAGAAC-------CCCCT-TTTTCTTCCTGAAAGGGTTGAAGATGAATAGGTTTG-----TC-TTTTTTGGCCTACACTGTGGTTC-TTGATTCCTaacacccattgtagaggcatgggttcagggctggctgaagttccagctcctctacttgtatgttcctgctcatgttatttaaaccctcaaaaccaaattttcttcatctgataaataaaaataat---atatttacctcttagactgtcaggaattagctaaaacatgggaaagtatttcacaaa-tataaagt-actTCTGTAC-AGTGTTGCTGTTACAATATATGTATTGACATTTGATGAAGTGATAAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112549411 378 + 204313951 AGCAAGAATATTCAATTGAAATAGCATCAAAACT-----TAATACATATGTTCTAGAAC-------CTTTT-TTTTTTTCCTGAAAAAGATGAAGATG-ACAGGTTTGGTACCTCTTTTTTTGTCCTACACTGTGGTTC-TTTATTCCTGACGC-CATTATAGAAGTAtggattcagtg--ggct-aagttccagctcttctacgtatatgttcctgctcatgttatttaaatccctaaaaccaaagtttcttcatctgctaaacaaaaataat---atatttacctcttagattgtcaggaatgagctaagacacgggaaagtatttcataagctatagagt-actTCTGTAT-AATGTTGCTGTTACAATATCTGTATTGACTTTTGACGAAGTGGTAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44997383 384 + 71252344 agcaaaaatattcaattgaaataggatcaaaaCTTAGGATAATACATATGCTCTAGAAC-------TTTTTATTTTTTTCCTGAAAAAGATGAAGATGAACAGGTTTGGTACCTC-TTTTTTGTCCTACACTGTGGTTC-TTTATTCCTGACAC-CATTATACAGGTGTGGATTCGGAg--ggtt-aagtcccagctcttctacttgtatgttcctgatcatgttatttaaatccctgaaaccaaagtttcttcatctgctaaacaaaaataat---atatttacctcttagattgtcaggaatgagctaagacacgggaaggtatttcataagctataaagt-actTCTGTAC-AGTGTTGCTGTTATAATATCTGTATTGACTTTTGACAAAGTGATAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 360101 377 - 1393929 AGCAAAAATATTCGACTGAAATAGCATCAAAACTTAGGATAATACATATGTTCTAAAAC-------CTT---TTTTTTTCCTGAAAAAGATGGAGATGAACAGGTTTTGTACCTC-TTTTTTGTCCTACACTGTGGTTC-TTTATTCCTGACAC-CATTATAGAGGTAtggattcaggg--ggtt-aagttccagctcttctacttgtatgttcctgctcatgttatttaaatccctaaaaccaaagtttcttcatctgctaaacaaaaataat---atattta----ttagattgtcaggaatgagctaagacatgggaaagtgtttcgtaagctataaagt-acttctgtac-agtgttgctattaCAATATCTGTATTGACTTTTGGCGAAGTGGTAAA i cebCap1.NW_016107830v1 C 0 I 15 s canFam3.chr3 14328720 353 + 91889043 AGCAAAAACA---------------------------GACAATAAGTGCTTTTTAGATT-------------TATTTTCTTAGGAAAGTTTCAAGATGGAAAGATTTAGTACCTA-CTCCGCGTCTCTTTCTGTGGTTCTTTTCCCCCCGACATCCGTAACAGATGCATGGGTTta-----ggctgaagttccagttcctctacttgtatactcctgttcatattgtttaaattctcaaaccctaagtttctttatctgcttagtggaaataatgtaatgtctacctcagagaatattgggaatga-ctaatgcatgtgaaagcattttatgaattgttaagtgagtcctatacaaatgtTGCTGTT--AGTGTCTGTATTGACTTTTACTGAAGTGGTGGA i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841027 285 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=100270.000000 s hg38.chr5_GL383530v1_alt 62707 16 + 101241 TACAGAAT--TAAAAAAT s panTro5.chr5 20295609 16 + 181907262 TACAGAAT--TAAAAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20307928 16 + 183735486 TACAGAAT--TAAAAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4794683 16 - 13748885 TACAGAAT--TAAAAAAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53826448 16 - 163208435 TACAGAAT--TAAAAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87849243 18 - 180051392 TATAGAATTATAAAAAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87953668 18 - 181584905 TATAGAATTATAAAAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1181157 18 - 8785636 TATAGAATTATAAAAAAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1644814 18 + 27333823 TATAGAATTATAAAAAAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1915048 18 - 91010382 TATAGAATTATAAAAAAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2034146 18 + 5179401 TGTAGAATTATAAAAAAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7732090 18 - 21726897 TATAGAATTATAAAAAAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112549789 16 + 204313951 CACAGAAT--TAAAATAA i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 44997767 16 + 71252344 CACAGAAT--TTAAAAAA i saiBol1.JH378106 C 0 I 1 s canFam3.chr3 14329073 16 + 91889043 TACAGAAT--GAACAACT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841027 285 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 360478 15 - 1393929 I a score=34644.000000 s hg38.chr5_GL383530v1_alt 62723 6 + 101241 GGCAGT s panTro5.chr5 20295625 6 + 181907262 GGCAGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20307944 6 + 183735486 GGCAGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4794699 6 - 13748885 GGCAAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53826464 6 - 163208435 GGCAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87849261 6 - 180051392 GGCAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87953686 6 - 181584905 GGCAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1181175 6 - 8785636 GGCAAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1644832 6 + 27333823 GGCAAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1915066 6 - 91010382 GGCAAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2034164 6 + 5179401 GGCAAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7732108 6 - 21726897 GGCAAT i colAng1.NW_012115488v1 C 0 C 0 s canFam3.chr3 14329089 6 + 91889043 ATTAGT i canFam3.chr3 C 0 I 32 e micMur3.chr12 84841027 285 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 360478 15 - 1393929 I e saiBol1.JH378106 44997783 1 + 71252344 I e calJac3.chr2 112549805 1 + 204313951 I a score=1855195.000000 s hg38.chr5_GL383530v1_alt 62729 306 + 101241 Tggctgggtgtggtggctcacgcct-------------------------------gtaatcccagctctttgggtggctgaggtgggtggattgcctgagatcaggagttcaagaccagccttgccaacatag-tgaaaccctgcctctactaaaaatagaaaaaattagctggacatggttgcaggca-cctgtaatcccagctactagggaggctgaggcaggagaattgcttgaaccccggaggtggaggttgcagtgagcc--gagatcatgccattgcactccagcctgggcaacaggagcaaaacttcctct--------caaac-aacaacaacaacaac------------------aG- s panTro5.chr5 20295631 306 + 181907262 Tggctgggtgtggtggctcacgcct-------------------------------gtaatcccagctctttgggaggctgaggtgggtggattgcctgagatcaggagttcaagaccagccttgccaacatag-tgaaaccctgcctctactaaaaatacaaaaaattagctggacatggttgcaggca-cctataatcccagctactagggagactgaggcaggagaatcgcttgaaccccggaggtggaggttgcagtgagct--gagatcacgccattgcactccagcctgtgcaacaggagcaaaacttcgtct--------caaac-aacaacaacaacaac------------------aG- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20307950 303 + 183735486 Tggctgggtgtggtggctcacgcct-------------------------------gtaatcccagctctttgggaggctgaggtgggtggattgcctgagatcaggagttcaagaccagccttgccaacatag-tgaaaccctgcctctactaaaaatacaaaaaattagctggacatggttgcaggca-cctataatcccagctactagggagactgaggcaggagaatcgcttgaaccccggaggtggaggttgcagtgagct--gagatcacgccattgcactccagcctgtgcaacaggagcaaaacttcgtct--------ca----aaCAACAACAACAAC------------------AG- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4794705 303 - 13748885 Tggctgggtgtggtggctcacgcct-------------------------------gtaatcccagctctttgggaggctgaggtgggtggattgcctgagatcaggagttcaagaccaggcttgccaacatag-tgaaaccctgcctctactaaaaatacaaaaaattagctggacatggttgcaggca-cctgtaatcccagctactagggaggctgaggcaggagaatcgcttgaaccccagaggtggaggttgcagtgagcc--gagatcacactattgcactccagcctgggcaacaggagcaaaacttcctct--------ca----aaCAACAACAACAAC------------------AG- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53826470 325 - 163208435 Tggctgggtgtggtggctcacgcct-------------------------------atcatcccagctctttgggaggctgaggtggatggattgcctgaggtcaggagttcaagaccagccttgccaacatagttgaaaccctgtatctactaaaaatacaaaaaattagctggacatggttgcaggca-cctgtaatcccagctactagggaggcggaggcaggagaatcgcttgaaccccggaggtggaggttgcagtgagcc--aagatcacgccattgcactccagcctgggcaacaggagcaaaactccgtct--------caaac-aacaacaacaacaataacaacaacgacaacaaAAG- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87849267 304 - 180051392 Tggctgggtatggtggctcccgcct-------------------------------gtaatcctagctcttt-ggaggctgaggtggatggattgcctgaggtcaggagttccagaccagccttgccaacatag-tgaaaccctgcctctattaaaaatacaaaaaattagctggacatggtggcaggca-cctgtaatctcagctactagggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgaagtgagcc--gagatcgcaccattgcattccagcctgggcaacgggagcaaaactccgtct--------caaacaaaca--aacaaaaaG------------------CC- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87953692 305 - 181584905 Tggctgggtatggtggctcccgcct-------------------------------gtaatcccagctctttgggaggctgaggtggatggattgcctgaggtcaggagttcaagaccagccttgccaacatag-tgaaaccctgcctctattaaaaatacaaaaaattagctggacatggtggcaggca-cctgtaatcccagctactagggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgaagtgagcc--gagatcgcaccattgcattccagcctgggcaacgggagcaaaactccgtct--------caaacaaaca--aacaaaaaG------------------CC- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1181181 307 - 8785636 Tggctgggtatggtggctcccgtct-------------------------------gtaatcccagctctttgggaggctgaggtggatggattgcctgaggtcaggagttcaagaccagccttgccaacatag-tgaaaccctgcctctattaaaaatacaaaaaattagctggacatggtggcaggca-cctgtaatcccagctactagggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgaagtgagccgagagatcgcaccattgcattccagcctgggcaacgggagcaaaactccgtct--------caaacaaaca--aacaaaaaG------------------CC- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1644838 305 + 27333823 Tggctgggtatggtagctcccacct-------------------------------gtaatcccagctctttgggaggctgaggtggatggattgcctgaggtcaggagttcaagaccagccttgccaacatag-tgaaaccctgcctctattaaaaatacaaaaaattagctggacatggtggcaggca-cctgtaatcccagctactagggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgaagtgagcc--gagatcgctccattgcattccagcctgggcaacaggagcaaaactctgtct--------caaacaaaca--aacaaaaaG------------------CC- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1915072 334 - 91010382 TGGCTGGGTATGGTGGCTCCCACCTATATTAAATTGTTAATTTAATAATTTAATTAAtaatcccagctctttgggaggctgaggtgggtggattgcctgaggtcaggagttcgagaccagccttgccaacatag-tgaaaccctgcctctactaaaaatacaaaaaattagctggacatggtggcaggca-cctgtaatcccagctactagggaggctgagccaggagaatcgcttgaacccgggaggtg--ggttgaagtgagcc--gagatcacaccattgcactccagtctgggcaacaggagcaaaactccatct--------caaacaaaca--aacaaaaaa------------------CC- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2034170 309 + 5179401 Tggctgggtgtggtggctcccgcct-------------------------------gtaatcccagctctttgggaagctgaggtggatggattgcctgaggtcaggagttcaagaccagccttaccaacatag-tgaaaccctgcctctattaaaaatacaaaaaattagctggacatagtggcaggca-cctgtaatcccagctactagggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgaagtgagcc--gagatcgcaccattgcattccagcctgggcaacaggagcaaaactccgtct----caaacaaacaaaca--aacaaaaaG------------------CC- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7732114 313 - 21726897 Tggctgggtatggtggctcccgcct-------------------------------gtaatcccagctctttgggaggctgaggtggatggattgcctgaggtcaggagttcaagaccagccttgccaacatag-tgaaaccctgcctctactaaaaatacaaaaaattagctggacatggtggcaggca-cctgtaatcccagctactagggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgaattgagct--gagatcgcaccattgcactccagcctgggcaacaggagcaaaactccgtctcaaacaaacaaacaaaca--aacaaaaaa------------------CT- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112549806 279 + 204313951 -------------------------------------------------------Ggtaatcccagcacttcgggaggctgaggcgggtggatcac--gagatcaagagatcgagaccatcctggtcaacatgg-tgaaaccctgtctctactaaaaatacaaaaaattagctgggcatggtggc--gcagcctgtaatcccagctactcgggaggctgaggcaggagaattgcctgaacccaggaggcggaggttgtggtgagcc--gagattgcgccattgcactccagcctgggtaacaagagcgaaactccgtct--------caaaaaaaaa--aaaaaaaaa------------------aaa i calJac3.chr2 I 1 I 5 e canFam3.chr3 14329095 32 + 91889043 I e micMur3.chr12 84841027 285 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 360478 15 - 1393929 I e saiBol1.JH378106 44997783 1 + 71252344 I a score=225781.000000 s hg38.chr5_GL383530v1_alt 63035 25 + 101241 GGTAATCTGTTTCTTGTTATTGCTT s panTro5.chr5 20295937 25 + 181907262 GGTAATCTGTTTCTTGTTATTGCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20308253 25 + 183735486 GGTAATCTGTTTCTTGTTATTGCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795008 25 - 13748885 GGTAATCTGTTTCTTGTTATTGCTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53826795 23 - 163208435 GGTAATCTGTTTCTTGTTATTGC-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87849571 25 - 180051392 GGTAATCTGTTTCTTGTTATTGCTT i rheMac8.chr6 C 0 I 1 s macFas5.chr6 87953997 25 - 181584905 GGTAATCTGTTTCTTGTTATTGCTT i macFas5.chr6 C 0 I 1 s macNem1.NW_012011400v1 1181488 25 - 8785636 GGTAATCTGTTTCTTGTTATTGCTT i macNem1.NW_012011400v1 C 0 I 1 s cerAty1.NW_012002401v1 1645143 25 + 27333823 GGTAATCTGTTTCTTGTTATTGCTT i cerAty1.NW_012002401v1 C 0 I 1 s chlSab2.chr4 1915406 25 - 91010382 TGTAATCTGTTTCTTGTTATTGCTT i chlSab2.chr4 C 0 I 1 s manLeu1.NW_012103732v1 2034479 25 + 5179401 AGTAATCTGTTTCTTGTTATTGCTT i manLeu1.NW_012103732v1 C 0 I 1 s colAng1.NW_012115488v1 7732427 25 - 21726897 GGTAATCTGTTTCTTGTTATTGCTT i colAng1.NW_012115488v1 C 0 I 1 s calJac3.chr2 112550090 25 + 204313951 GGTAATCCGTTTCTTGTTATTGCTT i calJac3.chr2 I 5 I 1 s saiBol1.JH378106 44997784 25 + 71252344 GGTAACCTACTTCTTGTTATTGCTT i saiBol1.JH378106 I 1 I 1 s cebCap1.NW_016107830v1 360493 25 - 1393929 GGTAATCTGTTTCTTGTTATTGCTT i cebCap1.NW_016107830v1 I 15 I 7 e canFam3.chr3 14329095 32 + 91889043 I e micMur3.chr12 84841027 285 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=102847.000000 s hg38.chr5_GL383530v1_alt 63060 19 + 101241 GCTGAGTGActctctctct s panTro5.chr5 20295962 19 + 181907262 GCTGACTGActctctctct i panTro5.chr5 C 0 C 0 s panPan2.chr5 20308278 19 + 183735486 GCTGACTGActctctctct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795033 19 - 13748885 GCTGAGTGActctctctct i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87849597 19 - 180051392 ACTGAGTGActctctctct i rheMac8.chr6 I 1 C 0 s macFas5.chr6 87954023 19 - 181584905 ACTGAGTGActctctctct i macFas5.chr6 I 1 C 0 s macNem1.NW_012011400v1 1181514 19 - 8785636 ACTGAGTGActctctctct i macNem1.NW_012011400v1 I 1 T 4666 s cerAty1.NW_012002401v1 1645169 19 + 27333823 ACTGAGTGActctctctct i cerAty1.NW_012002401v1 I 1 C 0 s chlSab2.chr4 1915432 19 - 91010382 ACTGAGTGActgtctctct i chlSab2.chr4 I 1 C 0 s manLeu1.NW_012103732v1 2034505 19 + 5179401 ACTGAGTGActctctctct i manLeu1.NW_012103732v1 I 1 C 0 s colAng1.NW_012115488v1 7732453 19 - 21726897 ACTGAGTGActctctctct i colAng1.NW_012115488v1 I 1 C 0 s calJac3.chr2 112550116 14 + 204313951 ACTGAGt--ctcactc--- i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 44997810 17 + 71252344 ACTGAGt--ctctctctct i saiBol1.JH378106 I 1 C 0 e canFam3.chr3 14329095 32 + 91889043 I e micMur3.chr12 84841027 285 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 360518 7 - 1393929 I e nomLeu3.chr2 53826818 0 - 163208435 C a score=1054.000000 s hg38.chr5_GL383530v1_alt 63079 2 + 101241 tg s panTro5.chr5 20295981 2 + 181907262 tg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20308297 2 + 183735486 tg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795052 2 - 13748885 tg i gorGor5.CYUI01014999v1 C 0 C 0 s saiBol1.JH378106 44997827 2 + 71252344 tt i saiBol1.JH378106 C 0 C 0 e canFam3.chr3 14329095 32 + 91889043 I e micMur3.chr12 84841027 285 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 360518 7 - 1393929 I e calJac3.chr2 112550130 0 + 204313951 C e colAng1.NW_012115488v1 7732472 0 - 21726897 C e manLeu1.NW_012103732v1 2034524 0 + 5179401 C e chlSab2.chr4 1915451 0 - 91010382 C e cerAty1.NW_012002401v1 1645188 0 + 27333823 C e macNem1.NW_012011400v1 1181533 4666 - 8785636 T e macFas5.chr6 87954042 0 - 181584905 C e rheMac8.chr6 87849616 0 - 180051392 C e nomLeu3.chr2 53826818 0 - 163208435 C a score=26778.000000 s hg38.chr5_GL383530v1_alt 63081 27 + 101241 ctctctctttctctctctctccctctc s panTro5.chr5 20295983 27 + 181907262 ctctctctttctctctctctccctctc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20308299 27 + 183735486 ctctctctttctctctctctccctctc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795054 27 - 13748885 ctctctctttctctctctctctctccc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53826818 19 - 163208435 --------Ttcactctctctctctctt i nomLeu3.chr2 C 0 C 0 s macNem1.NW_012011400v1 1176867 27 - 8785636 ctcttcccttctctctctctctctctc i macNem1.NW_012011400v1 T 4666 C 0 s calJac3.chr2 112550130 12 + 204313951 -----------tctctctttgag---- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44997829 17 + 71252344 ----------gtctctctttgagtctc i saiBol1.JH378106 C 0 C 0 e canFam3.chr3 14329095 32 + 91889043 I e micMur3.chr12 84841027 285 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 360518 7 - 1393929 I e colAng1.NW_012115488v1 7732472 0 - 21726897 C e manLeu1.NW_012103732v1 2034524 0 + 5179401 C e chlSab2.chr4 1915451 0 - 91010382 C e cerAty1.NW_012002401v1 1645188 0 + 27333823 C e macFas5.chr6 87954042 0 - 181584905 C e rheMac8.chr6 87849616 0 - 180051392 C a score=-20253.000000 s hg38.chr5_GL383530v1_alt 63108 18 + 101241 t--------------ctccctctctctccctc---- s panTro5.chr5 20296010 5 + 181907262 t--------------cccc----------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20308326 5 + 183735486 t--------------ctcc----------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795081 5 - 13748885 t--------------ctct----------------- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53826837 5 - 163208435 t--------------ctcC----------------- i nomLeu3.chr2 C 0 C 0 s macNem1.NW_012011400v1 1176894 18 - 8785636 tctcgcttgctctcgctc------------------ i macNem1.NW_012011400v1 C 0 I 4621 s chlSab2.chr4 1915451 3 - 91010382 ---------------ctt------------------ i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2034524 3 + 5179401 ---------------ctc------------------ i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7732472 3 - 21726897 ---------------ctc------------------ i colAng1.NW_012115488v1 C 0 C 0 s cebCap1.NW_016107830v1 360525 16 - 1393929 --------------------tctctctctctctctc i cebCap1.NW_016107830v1 I 7 C 0 e canFam3.chr3 14329095 32 + 91889043 I e micMur3.chr12 84841027 285 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e saiBol1.JH378106 44997846 0 + 71252344 C e calJac3.chr2 112550142 0 + 204313951 C e cerAty1.NW_012002401v1 1645188 0 + 27333823 C e macFas5.chr6 87954042 0 - 181584905 C e rheMac8.chr6 87849616 0 - 180051392 C a score=14488.000000 s hg38.chr5_GL383530v1_alt 63126 21 + 101241 tctttctctctctctccctct s chlSab2.chr4 1915454 21 - 91010382 tctttctctctctctctctct i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2034527 21 + 5179401 tctctctctctctctctctct i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7732475 21 - 21726897 gctttctctctctctctctct i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 44997846 1 + 71252344 --------------------t i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 360541 21 - 1393929 tctctatctctctctctctct i cebCap1.NW_016107830v1 C 0 C 0 e canFam3.chr3 14329095 32 + 91889043 I e micMur3.chr12 84841027 285 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e calJac3.chr2 112550142 0 + 204313951 C e cerAty1.NW_012002401v1 1645188 0 + 27333823 C e macNem1.NW_012011400v1 1176912 4621 - 8785636 I e macFas5.chr6 87954042 0 - 181584905 C e rheMac8.chr6 87849616 0 - 180051392 C e nomLeu3.chr2 53826842 0 - 163208435 C e gorGor5.CYUI01014999v1 4795086 0 - 13748885 C e panPan2.chr5 20308331 0 + 183735486 C e panTro5.chr5 20296015 0 + 181907262 C a score=125538.000000 s hg38.chr5_GL383530v1_alt 63147 54 + 101241 ctctccctctctctccctctctctccctctctctctctctctctcGCCCGC--TCA s panTro5.chr5 20296015 22 + 181907262 --------------------------------ctctctctctctcGCCCGC--TCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20308331 31 + 183735486 -----------------------ctcctctctctctctctctctcGCCCGC--TCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795086 30 - 13748885 ------------------------ctctctctctctctctctctcacccac--tcA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53826842 22 - 163208435 --------------------------------GCCCCCCCCCCCCACCTGT--TCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87849616 54 - 180051392 ctctctctctctctctctctctctctctctcGCTTGCTCTCGCTCGCCCGC--TCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87954042 54 - 181584905 ctctctctctctctctctctctctctctctcGCTTGCTCTCGCTCGCCCGC--TCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1181533 52 - 8785636 --ctctccctctctctctctctctctctctcGCTTGCTCTCGCTCGCCCGC--CCA i macNem1.NW_012011400v1 I 4621 C 0 s cerAty1.NW_012002401v1 1645188 40 + 27333823 --------------ctctctctctctctctctctcgctctcgctcgcCCGC--TCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1915475 24 - 91010382 ----------------------ctctc--------actctcgctGGCCCGC--TCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2034548 32 + 5179401 ----------------------ctctcGCTCGCTTGCTCTCGCTCGCCCGC--TCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7732496 28 - 21726897 --------------------------ctctcacttgctctcgctcgcccgc--tcA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112550142 38 + 204313951 -------------tctctctctctctctgtcgcttgctcttgctctcctac----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44997847 55 + 71252344 ctctctctctctctctctctctctctctgtctcttgctcttgctctcCCGCTGTT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 360562 53 - 1393929 ctctctctctctctctccccctctctctGTCACTTGCTCTTGCTCTCCCAC--TC- i cebCap1.NW_016107830v1 C 0 C 0 e canFam3.chr3 14329095 32 + 91889043 I e micMur3.chr12 84841027 285 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=1551398.000000 s hg38.chr5_GL383530v1_alt 63201 181 + 101241 TTCTTTTTTTCA-TTTTGGATTTGTTACAAAGTGACTGC----------TGCAGTTGTGCTTTCTGTCCCTTCTTTCTCCCTAGGTCTCCTCGTTGTTAATTTCTCTCCTTCATCTT-TTAAACTTTCATTCCTG-TTTTCTCCTTCAGCTTCTC-TCTCTTTCTCAATCACATTTTTattcttgtat-tcagtaa------------------------ s panTro5.chr5 20296037 181 + 181907262 TTCTTTTTTTCA-TTTTGGATTTGTTACAAAGTGACTGC----------TGGTGGTGTGCTTTCTGTCCCTTCTTTCTCCCTAGGTCTCCTCATTGTTAATTTCTCTCCTTCATCTT-TTAAACTTTCATTCCTG-TTTTCTCCTTCAGCTTCTC-TCTCTTTCTCAATCACATTTTTattcttgtat-tcagtaa------------------------ i panTro5.chr5 C 0 C 0 s panPan2.chr5 20308362 181 + 183735486 TTCTTTTTTTCA-TTTTGGATTTGTTACAAAGTGACTGC----------TGGTGGTGTGCTTTCTGTCCCTTCTTTCTCCCTAGGTCTCCTCATTGTTAATTTCTCTCCTTCATCTT-TTAAACTTTCATTCCTG-TTTTCTCCTTCAGCTTCTC-TCTCTTTCTCAATCACATTTTTattcttgtat-tcagtaa------------------------ i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795116 181 - 13748885 TTCTTTTTTTCA-TTTTGGATTTGTTACAAAGTGACTGC----------TGGTGTTGTGCTTTCTGTCCCTTCTTTCTCCCTAGGTCTCCTCATTGTTAATTTCTCTCCTTCATCTT-TTAAACTTTCATTCCTG-TTTTCTCCTTCAGCTTCTC-TCTCTTTCTCAATCACATTTTTattcgtgtat-tcagtaa------------------------ i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53826864 180 - 163208435 TTC-TTTTTTCA-TTTTGGATTTGTTACAAAGTGACTAC----------TGGTGTTGTGCTTCTTGTCCCTTCTTTCTCCCTAGGTCTCCTCATTGTTAATTTCTCTCCTTCATCTT-TTAAACTTTCATTCCGG-TTTTCTCCTTCAGCTTCTC-TCTCTTTCTCAATCACATTTTTatttgtatat-tcagtaa------------------------ i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87849670 179 - 180051392 TTCTTTTTGTCA-TTTTAGATTTGTTACAAAGTGACTCC----------TGGTGGTGTGCTTCTTGTCCCTTCTTTCTCCCTAGGTCTCCTCATTTTTAATTTATGTCCTTCATCTT-TTAAACTTTCATTCCTA-TTTTCTCCTTCAGCTTCTG-TCTCTTTCTCAATCACATTTTTattc--atat-tcagtaa------------------------ i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87954096 179 - 181584905 TTCTTTTTGTCA-TTTTAGATTTGTTACAAAGTGACTCC----------TGGTGGTGTGCTTCTTGTCCCTTCTTTCTCCCTAGGTCTCCTCATTTTTAATTTATGTCCTTCATCTT-TTAAACTTTCATTCCTA-TTTTCTCCTTCAGCTTCTG-TCTCTTTCTCAATCACATTTTTattc--atat-tcagtaa------------------------ i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1181585 179 - 8785636 TTCTTTTTGTCA-TTTTAGATTTGTTACAAAGTGACTCC----------TGGTGGTGTGCTTCTTGTCCCTTCTTTCTCCCTAGGTCTCCTCATTTTTAATTTATGTCCTTCATCTT-TTAAACTTTCATTCCTA-TTTTCTCCTTCAGCTTCTG-TCTCTTTCTCAATCACATTTTTattc--atat-tcagtaa------------------------ i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1645228 179 + 27333823 TTCTTTCTGTCA-TTTTAGATTTGTTACAAAGTGACTCC----------TGGTGGTGTGCTTCTTGTCCCTTCTTTCTCCCTAGGGCTCCTCATTTTTAATTTATGTCCTTCATCCT-TTAAACTTTCATTCCTA-TTTTCTCCTTCAGCTTCTG-TCTCTTTCTCAATCACATTTTTattc--atat-tcagtaa------------------------ i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1915499 179 - 91010382 TTCTTTTTGTCA-TTTTGGATTTGTTACAAAGTGACTCC----------TGGTGGTGTGCTTCTTGTCCCTTCTTTCTTCCCAGGTCTCCTCATTTTTAATTTCTGTCCTTCATCTT-TTAAACTTTCATTCCTA-TTTTCTCCTTCAGCTTTTG-TCTCTTTCTCAATCACATTTTTattc--atat-tcagtaa------------------------ i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2034580 177 + 5179401 TTCTTTTTGTCA-TTTTAGATTTGTTACAAAGTGACTCC----------TGGTGGTGTGCTTCTTGTCCCTTCTTTCTCCCTAGGTCTCCTCGTTTTTAATTTCTGTCCTTCATCTT-TTAAACTTTCATTCCTA-TTTTCTCCTTCAGCTTC---TCTCTTTCTCAATCACATTTTTattc--atat-tcagtaa------------------------ i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7732524 179 - 21726897 TTCTTTTTGTCA-TTTTGGATTTGTTACAAAGTGACACC----------TGGTGGTGTGCTTCTTGTCCCTTCTTTCTCCCTAGGTCTCCTCATTTTTAATTTCTGTCCTTCATCTT-TTAAACTTTCATTCCTA-TTTTCTCCTTCAGCTTCTG-TCTCTTTCTCAATCACATTTTTattc--atat-tcagtaa------------------------ i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112550180 180 + 204313951 tctttttttTCA-CTTTGGATTTGTTACAAAGTAAATCT----------CGGTGTTGTGCTTCTTGTCCCTTCTTTCTCCCTAGGTCTCCTCATTGTTAATTTTTGTCCTTTATCTT-TTAAACTTTCATTCCTG-TTTTCTCCTTCAGCTTCTT-TCTCTTTCTCAGTCACAGTTTTATTC--CTGTATCTGTaa------------------------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44997902 180 + 71252344 TCATTTTTTTTA-CTTTGGATTTGTTAGAAAGGAAATCT----------CAGTGTTATGCTTCTTGTCCCTTCTTTCTCCCTAGGTCTCCTCATTGTTAATTTTTGTCCTTTATTTT-TTAAACTTTCATTCCTG-TTTTCTCCTTCAGCTTCTT-TCCCTTTCTTAATCGCAGTtttattc--atgtatctgtaa------------------------ i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 360615 180 - 1393929 TTTCTTTTTTCA-CTTTGGATTTGTTACAAAGTAAATCT----------CAGTGTTGTGCTTCTTGTCCCTTCTTTCTCCCTAGGTCTCCTCATTGTTAAGTTTTGTCTTTTATCTT-TTAAACTTTCATCTCTG-TTTTCTCCTGCAGCTTCTT-TCTCTTTCTCAATCACAATtttattc--gtgtatctgtaa------------------------ i cebCap1.NW_016107830v1 C 0 C 0 s canFam3.chr3 14329127 214 + 91889043 TTCTTTTTCTTACTTTTGGATGTGTTAGAAAGCGATTCTATGTCTTACATGAGGTTGTGTTTCTGGTCTCAGCCATCTCCCCAGGTTTTCTAATCATTAAATTCTGTTCTTTCTCTTCCTTTACTTTCATTCTTATTTTTCTCTTTCACCTTCTCTTTTCCTCTTCAATCAGATTtttatta--a----tcagtaaatttttagagattttatttattta i canFam3.chr3 I 32 I 157 e micMur3.chr12 84841027 285 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=326935.000000 s hg38.chr5_GL383530v1_alt 63382 37 + 101241 atatttattgagaacctactatgtgctaggaactctt s panTro5.chr5 20296218 37 + 181907262 atatttattgagaacctactatgtgctaggaactctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20308543 37 + 183735486 atatttattgagaacctactatgtgctaggaactctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795297 37 - 13748885 atatttattgagaacctactatgtgctaggaactctt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827044 37 - 163208435 atatttattgagaacctactatgtgctaggaactctt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87849849 33 - 180051392 a----tattgagaacctactatgtgctaggaactctt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87954275 33 - 181584905 a----tattgagaacctactatgtgctaggaactctt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1181764 33 - 8785636 a----tattgagaacctactatgtgctaggaactctt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1645407 33 + 27333823 a----tattgagaacctactatgtgctaggaactctt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1915678 33 - 91010382 a----tattgagaacctactatgtcctaggaactctt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2034757 33 + 5179401 a----tattgagaacctactatgtgctaggaactctt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7732703 33 - 21726897 a----tactgagaacctactatgtgctaggaactctt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112550360 37 + 204313951 atatttattgagaacctgctatgtgctaggaattctt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44998082 37 + 71252344 atatttattgagaacctgctatgtgctaggaactctt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 360795 37 - 1393929 atatttattgagaacctgctatgtgctaggaactctt i cebCap1.NW_016107830v1 C 0 C 0 s canFam3.chr3 14329498 37 + 91889043 atatttgttgagcatctgctaaatgctaggaattctt i canFam3.chr3 I 157 I 3 e micMur3.chr12 84841027 285 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=4038062.000000 s hg38.chr5_GL383530v1_alt 63419 384 + 101241 gggatgtggggatat-gctagtCTGTAGCCTTTGTATTTATGTGTGTTTACCAAGACAATTTTATGAGAACTTGCACTTACCTCTCTGGATTAATGTGTCTCACTCTGATAACACTCATTATTCATATTCTGGTCATCAGTGTAATTCAGATTTACTCTCCTCTGACCCACTTCATTTTGTCCAAACTCTGATCAATTTAATCAGATTTAGCAGAGATATTTAAAAAGCATTTTGAAGAGTATGCAGAAACTGTTGAATATTGTTTGCATAGTGATTTTCACTAGATTGGGGTAAACACAGCTCCCTATATGTGTTCTTCAGGATTTGAGGGGAGAAAATTTTTCCAAAAT--ATATATAT--TTCAACTTGCAGGTTATCAAACACTC s panTro5.chr5 20296255 384 + 181907262 gggatgtggggatat-gctagtCTGTAGCCTTTGTATTTATGTGTGTTTACCAAGACAATTTTATGAGAACTTGCACTTACCTCTCTGGATTAATGTGTCTCACTCTGATAACACTCATTATTCATATTCTGGCCATCAGTGTAATTCAGATTTACTCTCCTCTGACCCACTTCATTTTGTCCAAACTCTGATCAATTTAATCAGAATTAGCAGAGATATTTAAAAAGCATTTTGAAGAGTATGCGGAAACTTTTGAATATTGTTTGCATAGTGATTTTCACTAGATTGGGGTAAACACAGCTCCCTATATGTGTTCTTCAGGATTTGAGGGGAGAAAATTTTTCCAAAAT--ATATATAT--TTCAACTTGCAGGTTATCAAACACCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20308580 384 + 183735486 gggatgtggggatat-gctagtCTGTAGCCTTTGTATTTATGTGTGTTTATCAAGACAATTTTATGAGAACTTGCACTTACCTCTCTGGATTAATGTGTCTCACTCTGATAACACTCATTATTCATATTCTGGCCATCAGTGTAATTCAGATTTACTCTCCTCTGACCCACTTCATTTTGTCCAAACTCTGATCAATTTAATCAGAATTAGCAGAGATATTTAAAAAGCATTTTGAAGAGTATGCGGAAACTTTTGAATATTGTTTGCATAGTGATTTTCACTAGATTGGGGTAAACACAGCTCCCTATATGTGTTCTTCAGGATTTGAGGGGAGAAAATTTTTCCAAAAT--ATATATAT--TTCAACTTGCAGGTTATCAAACACCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795334 384 - 13748885 gggatgtggggatat-gctagtCTGTAGCCTTTGTATTTATGTGTGTTTACCAAGACAATTTTATGAGAACTTGCACTTACCTCTCTGGATTAATGTGTCACACTCTGATAACACTCATTATTCACATTCTGGCCATCAGTGTAATTCAGATTTACTCTCCTCTGACCCACTTCATTTTGTCCAAACTCTGATCAATTTAATCAGAATTAGCAGAGATATTTAAAAAACATTTTAAAGAGTATGCAGAAACTTTTGAATATTGTTTGCATAGTGATTTTCACTAGATTGGGGTAAACACAGCTCCCTATATGTGTTCTTCAGGATTTGAGGGGAGAAAATTTTTCCAAAAT--ATATATAT--TTCAACTTGCAGGTTATCAAACACCC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827081 384 - 163208435 gggatgtggggatat-gctagtCTGTAGCCTTTGTATTTATGTGTGTTTACCGAGACAATTTTATGAGAATTTGCACTTACCTCTCTGGATCGATGTGTCTCACTCTGATAACACTCATTATTCATGTTCTGGCGCTCAGTGTAATTCAGATTTACTCTCCTCTGACCCACTTCATTTTGTCCAAACTCTGATCAATTTAATCAGAATTAGCAGAGATATCTAAAAAGCATTTTGAAGAGTATGCAGAAACTTTTGAATATTGTTTGCATGGTGATTTTCACTAGACTGGGGTAAACACAGCTCCCTATATGTGTTTTTCAGGATTCGAGGGGAGAAAATTTTTCCGAAAT--ATATATAT--TTCAACTTGCAGGTTATCAAACACCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87849882 384 - 180051392 gggatgtggggatat-gctagtCTGTAGCCTTTGTATTTGTGTGTGTTTACCAAGACAATTTTATGAGAATTTGTACTTACCTCTCTTGATTAATGTATCTCACTCTGATAACACTCATTATTCATATTCTGGACCTCAATGTAATTCAGTTTTACTCTTCTCTGACCCACTTCATTTTGTCCAAACTCTGATCAATTTAATCAGAATTAGCAGAGATATTTAAAAAACATTTTGAACAGTATGCAGAAACTTTTGAATA--GTTTGCATAGTGATTTTCACTAGATTGGGGTAAACACAGCTCCCTGTATGTGTTTTTCAGCATTTGAGGGGAGAAAATTTTTCCAAAATACATATATAT--TTCAACTTGCAGGTTATCAAACACTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87954308 384 - 181584905 gggatgtggggatat-gctagtCTGTAGCCTTTGTATTTGTGTGTGTTTACCAAGACAATTTTATGAGAATTTGTACTTACCTCTCTGGATTAATGTATCTCACTCTGATAACACTCATTATTCATATTCTGGACCTCAATGTAATTCAGTTTTACTCTTCTCTGACCCACTTCATTTTGTCCAAACTCTGATCAATTTAATCAGAATTAGCAGAGATATTTAAAAAACATTTTGAACAGTATGCAGAAACTTTTGAATA--GTTTGCATAGTGATTTTCACTAGATTGGGGTAAACACAGCTCCCTGTATGTGTTTTTCAGCATTTGAGGGGAGAAAAATTTTCCAAAATACATATATAT--TTCAACTTGCAGGTTATCAAACACTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1181797 384 - 8785636 gggatgtggggatat-gctagtCTGTAGCCTTTGTATTTGTGTGTGTTTACCAAGACAATTTTATGAGAATTTGTACTTACCTCTCTGGATTAATGTATCTCACTCTGATAACACTCATTATTCATATTCTGGACCTCAATGTAATTCAGTTTTACTCTTCTCTGACCCACTTCATTTTGTCCAAACTCTGATCAATTTAATCAGAATTAGCAGAGATATTTAAAAAACATTTTGAACAGTATGCAGAAACTTTTGAATA--GTTTGCATAGTGATTTTCACTAGATTGGGGTAAACACAGCTCCCTGTATGTGTTTTTCAGCATTTGAGGGGAGAAAATTTTTCCAAAATACATATATAT--TTCAACTTGCAGGTTATCAAACACTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1645440 384 + 27333823 gggatgtggggatat-gctagtCTGTAGCCTTTGTATTTGTGTTTGTTTACCAAGACAATTGTATGAGAATTTGTACTTACCTCTCTGGATTAATGTATCTCACTCTGATAACACTCATTATTCATATTCTGGACCTCAATGTAATTCAGTTTTACTCTCCTCTGACCCACTTCATTTTGTCCAAACTCTGATCAATTTAATCAGAATTAGCAGAGATATTTAAAAAACATTTTGAACAGTATGCAGAAACTTTTGAATA--GTTTGCATAGTGATTTTCACTAGATTGGGGTAAACACAGCTCCCTGTATGTGTTTTTCAGCATTTGAGGGGAGAAAATTTTTCCAAAATACATATATAT--TTCAACTTGCAGGTTATCAAACACTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1915711 384 - 91010382 gggatgtggggatac-gctagtCTGTAGCCTTTGTATTTATGTGTGTTTACCAAGACAATTTTATGAGAATTTGCACTTACCTCTCTGGATTAATGTATCTCACTCTGATAACACTCGTTATTCGTATTCTGGACCTCAGTGTAATTCAGTTTTACTCTCCTCTGACCCACTTCATTTTGTCCAAACTCTGATCAATTTAATCAGAATTAGCAGAGATACTTTTAAAACATTTTGAAGAGTACGCAGAAACTTTTGAATA--GTTTGCATAGTGATTTTCACTAGATTGGGGTAAACACAGCTCCCTTTATGTGTTTTTCAGCATTTGAGGGGAGAAAATTTTTCCAAAATACATATATAT--TTCAACTTGCAGGTTATCAAACACTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2034790 384 + 5179401 gggatgtggggatat-gttagtCTGTAGCCTTTGTATTTGTGTGTGTTTACCAAGACAATTTTATGAGAATTTGTACTTACCTCTCTGGATTAATGTATCTCACTCTGATAACACTCATTATTCATATTCTGGACCTCAATGTAATTCAGTTTTACTCTTCTCTGACCCACTTCATTTTGTCCAAACTCTGATCAATTTAATCAGAATTAGCAGAGATATTTAAAAAACATTTTGAACAGTATGCAGAAACTTTTGAATA--GTTTGCATAGTGATTTTCACTAGATTGGGGTAAACACAGCTCCCTGTATGTGTTTTTCAGCATTTGAGGGGAGAAAATTTTTCCAAAATACATATATAT--TTCAACTTGCAGGTTATCAAACACTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7732736 384 - 21726897 gggatgtggggataT-GCTAGTCTGTAGCCTTTGTATTTATGTGTGTTTACCAAGACAATTTTATGAGAATTTGCACTTACCTCTCTGGATTAATGTATCTCACTCTGATAACACTCATTATTCATATTCTGGACCTCAATGTAATTCAGTTTTACTCTCCTCTGACCCACTTCATTTTGTCCAAACTCTGATCAATTTAATTAGAATTAGCAGAGATATTTAAAAAGCATTTTGAAGAGTATGCAGAAACTTTTAAATA--GTTTTCATAGTGATTTTCACTAGATTGGGGTAAACACAGCTCCCTGTATGTGTTTTTCAGCATTTGAGGGGAGAAAATTTTTCCAAAATACATATATAT--TTCAATTTGCAGGTTATCAAACACTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112550397 383 + 204313951 gggatgtgggtacaT-GTTAGTCTGTAGCCTTTGTATTTATGTGTGTTTACCAAGACAATTTTATGAGAATTTTCACTTACCTCTCTGGATTAATGTATCTCACTCTGATAACACTCATTATTCATATTCTGGACTTCAGTGTAATTCAGATTTATTATCCTCCATCCCACTTCATTTTGTACAAACTCTGATCAATTTAATCAGAATTAGCAGAGATATTTAACAAGCATTTTGAAGAGTATGCAG-AACTTTTGAATATTGGTTACATAGTCATTTCCACTAGATTGGGGTAAACAGAGCTCCCTTTATGTGTTTTTCAGCATTTGAGGGAAGAAAAGTTTTCTAAAAT--ATATATAT--TTCAATTTGGAGGTTGTCAAACACCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44998119 386 + 71252344 gggatgtgggtacaT-GTTAGTCTGTAGCCTTTATATTTACGTGTGTTTACCAAGACACTTTTATGAGAATTTGCACTTACCTCTCTAGATTAATGTATCTCACTCTGATAACACTCATTATTCATATTCTGGACTTCAGTGTAATTCAGATTTATTATCCTCTGACCCACTTCATTTTTTACAAACTCTGATCAATTTAATCAGAATTAGCAGAGATATTTAACAAGCATTTTGAAGAGTATGCAGAAACTTTTGAATATTGTTTACATAGTCATTTCCACTAGATTGGGATAAACAGAGCTCCCTATATGTGTTTTTCAACATTTGAGGGGAGAAAAGTTTTCCAAAAT--ATATATATACTTCAATTTGGAGGTTGTCAAACACCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 360832 384 - 1393929 gggatgtgggTAGAT-GTTAGTCTGTAGCCTTTGTATTTATGTGTGTTTACCAACACAGTTTTATGAGAATTTTCACTTACCACTCTGGATTAATGTATCTCACTCTGATAACACTCATTATTCATATGCTGGACTTCAGTATAATTCAGATTTATTATCCTCCGACCCACTTCATTTTGTACAAACTCTGATCGATTTAATCAGAATTAGCAGAGATATTAAACAAACATTTTGAAGAGTATGCAGAAACTTTTGAATATTGTTTACATAGTCATTTCCACTAGATTGGGATAAGCAGAGCTCCCTATATGTGTTTTTGAGCATTTGAGGGGAGAAAAGTTTTCCAAAAT--ATATATAT--TTCAATTTGTAGGTTGTCAAATACCC i cebCap1.NW_016107830v1 C 0 C 0 s micMur3.chr12 84841312 375 + 108143057 GGGATGTGGGCATAT-GCTAGTCTGCAGCA-TTGTATTTATGTGTGTTTACC-AGGCAATTTCATGAGAATTTGCATTTACTTCTCCAGATTAATGTATCTCACTCTGACAGTACTCATTATTCATATTCTGGACTTTGGTGTACTTTAGCTTTACTGTACTCTGATCTA---CATTTTATTCAAACTCTGATCAATTTAGTCAGAATTAGCAAAGATATTTCAT-AGCATTTTGAAGAGTATGCAGAAAATTTTG-ATATTGTTTATATAGTGAGTCTCACTAGATTGATGTAAACACAGCTCCCTATATGTGTTTTTTATCATTTGAGGGGAGAAAAATTTTCCAAA----ATATATAT--TTCAGCTTGAAGGTGATCAAACGCTC i micMur3.chr12 I 285 I 20 s canFam3.chr3 14329538 375 + 91889043 gggatctgagcatatagcTAGTCTGCAGTCTTTGTATTTATGTTTGTTTACC-AGGCAGTCTTAGGAGACTCTGCATTTATCCCTCTCAATTACTCTCTCTCACTCTAATGAAGCTCGTTATTCATATTGTAGACCTCAGTATACTTCACGTTGACTATTC-CTGATCCACTTCATTTTGTCTAAACTCTGGTTAATTTAATCAGAATTAGCAGAGATATTT----AGCATTCTGAAGAATGTGCGGAAACTTTTTAATGTCACCTCTACAGTGATGTTCATTAGGTAAGGATACACGCAGCTCCCTATTTGTGTTTGTCAGAGATTGAGGGGAGAAAACTTT--CAAA----ATACGTAT--TTCAGCCTGGAAGTTGTCAAACTTCT i canFam3.chr3 I 3 C 0 e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=240885.000000 s hg38.chr5_GL383530v1_alt 63803 31 + 101241 ATGTCCCTCCTCTGTCCCAGAGATAAGCCC-C- s panTro5.chr5 20296639 31 + 181907262 ATGTCCCTCCTCTGTCCCAGAGATATGCCC-C- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20308964 31 + 183735486 ATGTCCCTCCTCTGTCCCAGAGATATGCCC-C- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795718 31 - 13748885 ATGTCCCTCCTCTGTCCCAGAGATATGCCC-C- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827465 31 - 163208435 ATGTCCCTCCTCTGTCCCAGAGATATGCCC-C- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87850266 31 - 180051392 ATGTTCCTCTGCTGTCCCAGAGATATACCC-C- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87954692 31 - 181584905 ATGTTCCTCTGCTGTCCCAGAGATATACCC-C- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1182181 31 - 8785636 ATGTTCCTCTGCTGTCCCAGAGATATACCC-C- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1645824 31 + 27333823 ATGTTCCTCTGCTGTCCCAGAGATATACCC-C- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916095 31 - 91010382 ATGTTCCTCCTCTGTCCCAGAGATATGCCC-C- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2035174 31 + 5179401 ATGTTCCTCTGCTGTCCCAGAGATATACCC-C- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7733120 31 - 21726897 ATGTTCCTCTGCTGTCCCAGAGATATGCCC-C- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112550780 30 + 204313951 ATGTCTCTCCTCTATCCGAGAGATATGCCC--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44998505 30 + 71252344 ACGTTTCTCTTCTATCCCAGAGATATGCCC--- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 361216 31 - 1393929 ATGTCTCTCCTCTGTCCCAGAGATATGCCCC-- i cebCap1.NW_016107830v1 C 0 I 565 s canFam3.chr3 14329913 32 + 91889043 ATCTCTCGCCCTTCCTCCAGAAGCAGTCTC-CT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I a score=213993.000000 s hg38.chr5_GL383530v1_alt 63834 28 + 101241 CTATTCACCACCCCTGCTGCTC--TATTGA s panTro5.chr5 20296670 28 + 181907262 CTATTCACCACCCCTGCTGCTC--TATTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20308995 28 + 183735486 CTATTCACCACCCCTGCTTCTC--TATTGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795749 28 - 13748885 CTATTCACCACCCCTGCTGCTC--TATTGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827496 28 - 163208435 CTACTCACCACCCCTGCTGCTG--TATTGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87850297 30 - 180051392 CTACTCACCACCCCTGCTGCTCTATATTGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87954723 30 - 181584905 CTACTCACCACCCCTGCTGCTCTATATTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1182212 30 - 8785636 CTACTCACCACCCCTGCTGCTCTATATTGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1645855 30 + 27333823 CTACTCACCACCCCTGCTGCTCTATATTGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916126 30 - 91010382 CTACTCACCATCCCTGCTGCTCTATATTGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2035205 30 + 5179401 CTACTCACCACCCCTGCTGCTCTATATTGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7733151 30 - 21726897 CTACTCACCACCCCTGCTGCTCTATATTGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112550810 30 + 204313951 CTACTCCCTGCCCCTGCAGCTCTGTATTGG i calJac3.chr2 C 0 I 350 s saiBol1.JH378106 44998535 30 + 71252344 CTATTCCCTGCCCCTGCTGCTCTGTATTGA i saiBol1.JH378106 C 0 I 334 s canFam3.chr3 14329945 27 + 91889043 ---CTACCCACCCTCATTGCCCTGTATTGA i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 361247 565 - 1393929 I a score=17253.000000 s hg38.chr5_GL383530v1_alt 63862 3 + 101241 AAG- s panTro5.chr5 20296698 3 + 181907262 AAG- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309023 3 + 183735486 AAG- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795777 3 - 13748885 AAG- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827524 3 - 163208435 AAG- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87850327 3 - 180051392 AAG- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87954753 3 - 181584905 AAG- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1182242 3 - 8785636 AAG- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1645885 3 + 27333823 AAG- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916156 3 - 91010382 AAG- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2035235 3 + 5179401 AAG- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7733181 3 - 21726897 AAG- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112551190 2 + 204313951 -AG- i calJac3.chr2 I 350 I 1 s saiBol1.JH378106 44998899 2 + 71252344 -AG- i saiBol1.JH378106 I 334 I 1 s canFam3.chr3 14329972 3 + 91889043 -GGA i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I e aotNan1.NW_018506370v1 1434972 189 - 15889662 I e cebCap1.NW_016107830v1 361247 565 - 1393929 I a score=459622.000000 s hg38.chr5_GL383530v1_alt 63865 44 + 101241 ATGTTCTATATTTAAGATCATATCTTGATGGGAACTTGCCAGAT s panTro5.chr5 20296701 44 + 181907262 ATGTTCTATATTTAAGATCATATCTTGATGGGAACTTGCCAGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309026 44 + 183735486 ATGTTCTATATTTAAGATCATATCTTGATGGGAACTTGCCAGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795780 44 - 13748885 ATGTTCTATATTTAAGATCATATCTTGATGGGAACTTGCCAGAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827527 44 - 163208435 ATGTTCTATATTTAAGATCGTATCTTGATGGGAACTTGCCAGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87850330 44 - 180051392 ATGTTCTATATTTAAGATCATATCTCGATAGGAACTTGCCAGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87954756 44 - 181584905 ATGTTCTATATTTAAGATCATATCTCGATAGGAACTTGCCAGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1182245 44 - 8785636 ATGTTCTATATTTAAGATCATATCTCGATAGGAACTTGCCAGAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1645888 44 + 27333823 ATGTTCTATATTTAAGATCATATCTCGATAGGAACTTGCCAGAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916159 44 - 91010382 ATGTTCTATATTTAAGATCATATGTCGACAGGAACTTGCCAGAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2035238 44 + 5179401 ATGTTCTATATTTAAGATCATATCTCGATAGGAACTTGCCAGAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7733184 44 - 21726897 ATGTAATATATTTAAGATCATATCTCGACAGGAACTTGCCAGAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112551193 44 + 204313951 ATGTTCTATATTTAAGATCATATCTTGATGGGAACTTGCCAGAT i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 44998902 44 + 71252344 ATGTTCTATATTTAATATCATATTTTGATGGGAACTTGCCAGAT i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107830v1 361812 44 - 1393929 ATGTTCTATATTTAAGATCATATCTTGATGGGAACTTGCCAGAT i cebCap1.NW_016107830v1 I 565 C 0 s aotNan1.NW_018506370v1 1435161 44 - 15889662 ATGTTCTGTATTTAAGATCATATTTTAATGGGAACTTGCCAGAT i aotNan1.NW_018506370v1 I 189 C 0 s canFam3.chr3 14329975 26 + 91889043 ATGTT-----------------TCTC-ATGGAAATTGGCCAAAT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1318651 3713 - 29863360 I a score=62356.000000 s hg38.chr5_GL383530v1_alt 63909 5 + 101241 TCTTC s panTro5.chr5 20296745 5 + 181907262 TCTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309070 5 + 183735486 TCTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795824 5 - 13748885 TCTTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827571 5 - 163208435 TCTCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87850374 5 - 180051392 TCTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87954800 5 - 181584905 TCTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1182289 5 - 8785636 TCTTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1645932 5 + 27333823 TCTTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916203 5 - 91010382 TCTTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2035282 5 + 5179401 TCTTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7733228 5 - 21726897 TCTTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112551237 5 + 204313951 TCTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44998946 5 + 71252344 TCTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 361856 5 - 1393929 TCTTC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1435205 5 - 15889662 TCTTC i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1322364 5 - 29863360 TTCTC i otoGar3.GL873536 I 3713 C 0 s canFam3.chr3 14330001 5 + 91889043 TCTTC i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I a score=1102970.000000 s hg38.chr5_GL383530v1_alt 63914 112 + 101241 TATTAACATGTCATC----------TTCATTTCACTGGACTAGATAACTCATAGTCTCTTCTTTCTTGCCAGGATAGTCAATATTTATGA-TTTAATTCTGGTCATGTTCACAAAACATT-TTT s panTro5.chr5 20296750 112 + 181907262 TATTAACGTGTCATC----------TTCATTTCACTGGACTAGATAACTCATAGTCTCTTCTTTCTTGCCAGGATAGTCAATATTTATGA-TTTAATTCTGGTCATGTTCACAAAACATT-TTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309075 112 + 183735486 TATTAACATGTCATC----------TTCATTTCACTGGACTAGATAACTCATAGTCTCTTCTTTCTTGCCAGGATAGTCAATATTTATGA-TTTAATTCTGGTCATGTTCACAAAACATT-TTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795829 112 - 13748885 TATTAACATGTCATC----------TTCATTTCACTGGACTAGATAATTCATAGTCTCTTCTTTCTTGCCAGGATAGTCAATATTTATGA-TTTAATTCTGGTCATGTTCACAAAACATT-TTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827576 91 - 163208435 TATTAACATGTCATC----------TTCATTTCA---------------------CTCTTCTTTCTTGCCAGGATAGTCAATATTTATGA-TTTAATTCTGGTCATGTTCACAGAACTTT-TTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87850379 112 - 180051392 TATTAACATGTCATC----------TTCATTTCACTGGACTAGATAACTCATAGTCTCTTCTTTATTGCCAGGATACTCAATATTTATCA-TTTAATTCTGATCATGTTCACAAAATATT-TTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87954805 112 - 181584905 TATTAACATGTCATC----------TTCATTTCACTGGACTAGATAACTCATAGTCTCTTCTTTATTGCCAGGATACTCAATATTTATCA-TTTAATTCTGATCATGTTCACAAAATATT-TTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1182294 112 - 8785636 TATTAACATGTCATC----------TTCATTTCACTGGACTAGATAACTCATAGTGTCTTCTTTATTGCCAGAATACTCAATATTTATCA-TTTAATTCTGACCATGTTCACAAAATATT-TTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1645937 112 + 27333823 TATTAACATGTCATC----------TTCATTTCACTGGACTAGATAACTCATAGTCTCTTCTTTATTGCCAGGATACTCAATATTTATCA-TTTAATTCTGGTCATGTTCACAAAACATT-TTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916208 112 - 91010382 TATTAACATGTCGCC----------TTCATTTCACTGGACTAGATAACTCATAGTCTCTTCTTAATTGCCAGGATACTCAATATTTATCA-TTTAATTCTGGTCATGTTCACAAAACATT-TTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2035287 112 + 5179401 TATTAACATGTCATC----------TTCATTTCACTGGACTAGATAACTCATAGTCTCTTCTTTATTGCCAGGATACTCAATATTTATCA-TTTAATTCTGATCATGTTCACAAAACATT-TTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7733233 112 - 21726897 TATTAACATGTCATC----------TTCATTTCACCAGACTAGATAACTCATAGTCTCTTCTTTATTGCCAGGATACTCAATATTTATCA-TTTAATTCTGGTCATGTTCACAAAACATT-TTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112551242 113 + 204313951 AGTTAACATGCCATC----------TTCGTTTCACTGGACTCGATAACTTATTGCTTCTTCTTTATTACCAGGATATTAAATATTTATCATTTTAGTTCTGGTCATATTCACAAAACGTT-TTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44998951 114 + 71252344 AGTTAACATGCCATC----------TTCATTTCACTGGACTAGATAGCTTATTGTCTCTTCTTTATTACCAGGATATTCAATATTTATCATTTTAGTTCTGGTCATATTCACAAAACATTATTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 361861 114 - 1393929 AGTTAACATGCCATT----------TTCATTTCATTGGACTAGATAACTTATTGTCTCTTCTTTATTGCCAGGATATTCAATATTTATCATTTTAGTTCTGGTCATATTCACAAAATGTTTTTC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1435210 114 - 15889662 AGTTAACATGCCATC----------TTCATTTCACTGGACTAGATAACTTATTGTCTCTTCTTTATTGCCAGGGTATTCAATATTTATCATTTTAGTTCTGGTCATATTCACAAAATGTATTTT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1322369 123 - 29863360 AATTAGCATGCCATCTTAATGCAAATTCACTTCACTGGATCAGATAACATACATTCTCTTCTTTATTACCAGGATATTCAAAATTTATCATTTTAGATGTGATAATATTCAGGACACATT-TTT i otoGar3.GL873536 C 0 I 750 e canFam3.chr3 14330006 0 + 91889043 C e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I a score=144089.000000 s hg38.chr5_GL383530v1_alt 64026 16 + 101241 TCCTGACACACCCTTA s panTro5.chr5 20296862 16 + 181907262 TCCTGACACACCCTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309187 16 + 183735486 TCCTGACACACCCTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795941 16 - 13748885 TCCTGACACACCCTTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827667 16 - 163208435 TCCTGACACACCCTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87850491 16 - 180051392 TCCTGTCACACCCTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87954917 16 - 181584905 TCCTGTCACACCCTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1182406 16 - 8785636 TCCTGTCACACCCTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1646049 16 + 27333823 TCCTGTCACACCCTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916320 16 - 91010382 TCCTGTCACACCCTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2035399 16 + 5179401 TCCTGTCACACCCTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7733345 16 - 21726897 TCCTGTCACACCCTTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112551355 16 + 204313951 TTCTGACACACTCTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44999065 16 + 71252344 TTCTGACATACTCTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 361975 16 - 1393929 TCCCGACACACTTTCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1435324 16 - 15889662 TCCCGACACACTCTCA i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14330006 0 + 91889043 C e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I a score=625301.000000 s hg38.chr5_GL383530v1_alt 64042 72 + 101241 AGTGTGTTAGGATTAGTAAAA--------ACAACAACAATA----ACAAAATCCCTGAAAATCATTGATCTATTGGATGGATAT s panTro5.chr5 20296878 72 + 181907262 AGTGTGTTAGGATTAGTAAAA--------ACAACAACAATA----ACAAAATCCCTGAAAATCATTGATCTATTGGATGGATAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309203 72 + 183735486 AGTGTGTTAGGATTAGTAAAA--------ACAACAACAATA----ACAAAATCCCTGAAAATCATTGATCTATTGGATGGATAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4795957 72 - 13748885 AGTGTGTTAGGATTAGTAAAA--------ACAACAACAATA----ACAAAATCCCTGAAAATCATTGATCTATTGGATGGATAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827683 72 - 163208435 AGTGTGTTGGGATTAGTAAAA--------ACAACAACAATA----GCAAAATCCCTGAAAATCATTGATCTATTGGATGGATAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87850507 71 - 180051392 AGTGTGTTGGGATTAGTAAA---------ATAACAACAGTA----ACAAAATCCCTAAAAATCATTGATCTATTGGATGAATAT i rheMac8.chr6 C 0 I 313 s macFas5.chr6 87954933 71 - 181584905 AGTGTGGTGGGATTAGTAAA---------ATAACAACAATA----ACAAAATCCCTAAAAATCATTGATCTATTGGATGAATAT i macFas5.chr6 C 0 I 313 s macNem1.NW_012011400v1 1182422 71 - 8785636 AGTGTGTTGGGATTAGTAAA---------ATAACAACAATA----ACAAAATCCCTAAAAATCATTGATCTATTGGATGAATAT i macNem1.NW_012011400v1 C 0 I 334 s cerAty1.NW_012002401v1 1646065 71 + 27333823 AGTGTGTTGGGATTAGTAAA---------ACAACAACAATA----ACAAAATCCCTAAAAATCATTGATCTATTGGATGAATAT i cerAty1.NW_012002401v1 C 0 I 296 s chlSab2.chr4 1916336 69 - 91010382 AGTGTGTTGGGATTAGTAAA-----------AACAACAATA----ACAAAATCCCTAAAAATCACTGATCTATTGGATAAATAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2035415 71 + 5179401 AGTGTATTGGGATTAGTAAA---------ATAACAACAATA----ACAAAATCCCTAAAAATCATTGATCTATTGGATGAATAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7733361 72 - 21726897 AGTGTGTTGGGATTAGTAAAA--------ACAACAACAATA----ACAAAATCCCTAAAAATCATTGATCTATTGGATGAATAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112551371 82 + 204313951 AGTGCATTAGGATTAGTAAAAAACAAAACATAACAACAACAAT--AAAAAATCTTTCAAAATCATTGATCTATTAGATGGAGAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44999081 84 + 71252344 AGTGCATTAGGATTAGTAAAAAACAAAACATAACAACAACAATAAAAAAAATCTTTGAAAATCATTGATCTATTAGATGGAGAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 361991 82 - 1393929 AGTGCATTAGGATTAGGAAaaaacaaaacataacaacaacaat--aaaaaaTCTTTGAAAATCATCGATCTATTAGATGGAGAC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1435340 79 - 15889662 AGTGCATTAGGAATAGTAAAAAACAAAACATAATAACAGT-----AAAAAATCTTTGGAAATCATTGATCTGTTAGATGAAGAC i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14330006 60 + 91889043 AGTGTTTTGGAATTAGTCAAA------------------------GAAAAAAGGCTGAGACTGATTCGTCTATTGGACAGAGAT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I a score=86015.000000 s hg38.chr5_GL383530v1_alt 64114 10 + 101241 AAAAAGACAT s panTro5.chr5 20296950 10 + 181907262 AAAAAGACAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309275 10 + 183735486 AAAAAGACAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4796029 10 - 13748885 AAAAAGACAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827755 10 - 163208435 ACATATCCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87850891 10 - 180051392 AAAAGGACAT i rheMac8.chr6 I 313 C 0 s macFas5.chr6 87955317 10 - 181584905 AAAAGGACAT i macFas5.chr6 I 313 C 0 s macNem1.NW_012011400v1 1182827 10 - 8785636 aaaaGGACAT i macNem1.NW_012011400v1 I 334 C 0 s cerAty1.NW_012002401v1 1646432 10 + 27333823 aaaaGGACAT i cerAty1.NW_012002401v1 I 296 C 0 s chlSab2.chr4 1916405 10 - 91010382 AAAAGGACAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2035486 10 + 5179401 AAAAGGACAT i manLeu1.NW_012103732v1 C 0 I 331 s colAng1.NW_012115488v1 7733433 9 - 21726897 AAAAGGACA- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112551453 10 + 204313951 AAAAGGACAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44999165 10 + 71252344 AAAAGGACGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 362073 10 - 1393929 AAAAGGACAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1435419 10 - 15889662 AAAAGGACAT i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14330066 10 + 91889043 AAAATGATGT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I a score=1298792.000000 s hg38.chr5_GL383530v1_alt 64124 127 + 101241 ATGTATGTCAGTGGGTATAAATATATAATTTGACTTCTATAATGAACAAATTTCCTGAAATCAT-ATATATCAACATTTAATAAAT--GTTAA-ATTATAAGTGTAGTC----TTCAAATTTTGTGACCTAATGC s panTro5.chr5 20296960 127 + 181907262 ATGTATGTCAGTGGGTATAAATATATAATTTGACTTCTATAATGAACAAATTTCCTGAAATCAT-ATATATCAACTTTTAATAAAT--GTTAA-ATTATAAGTGTAGTC----TTCAAATTTTGTGACCTAATGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309285 127 + 183735486 ATGTATGTCAGTGGGTATAAATATATAATTTGACTTCTATAATGAACAAATTTCCTGAAATCAT-ATATATCAACTTTTAATAAAT--GTTAA-ATTATAAGTGTAGTC----TTCAAATTTTGTGACCTAATGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4796039 126 - 13748885 ATGTATGTCAGTGGGTATAAATATATAATTTGACTTCTATAATGAA-AAATTTCCTGAAATCAT-ATATATCAACATTTAATAATT--GTTAA-ATTATAAGTGTAGTC----TTCAAATTTTGTGACCTAATGC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827765 127 - 163208435 ATGTATGTCAGTAGGTATAAATATATAATTTGGCTTCTATAATGAACAAATTTCCTGAAATCAT-ATATATCAACAATTAATAAAT--GTTAA-ATTATAAGTGTAGTC----TTCAAATTTTGTGACCTGATGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87850901 126 - 180051392 ATGTATGTCAGTGGGTATAAATATATAATTTGACTTCTATAATGAACAAA-TTCCTGAAATCGT-ATATATCAACATTTAATAAAT--GTTAA-ATTATAAGTGTAGTC----TTCAAATTTTGTGACCTAATGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87955327 126 - 181584905 ATGTATGTCAGTGGGTATAAATATATAATTTGACTTCTATAATGAACAAA-TTCCTGAAATCGT-ATATATCAACATTTAATAAAT--GTTAA-ATTATAAGTGTAGTC----TTCAAATTTTGTGACCTAATGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1182837 126 - 8785636 ATGTATGTCAGTGGGTATAAATATATAATTTGACTTCTATAATGAACAAA-TTCCTGAAATCAT-ATATATCAACATTTAATAAAT--GTTAA-ATTATAAGTGTAGTC----TTCAAATTTTGTGACCTAATGC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1646442 126 + 27333823 ATGTATGTCAGTGGGTATAAATATATAATTTGACTTCTATAATGAACAAA-TTCCTGAAATCGT-ATATATCAACATTTAATAAAT--GTTAA-ATTATAAGTGTAGTC----TTCAAATTTTGTGACCTAATGC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916415 126 - 91010382 ATGTATGTCAGTGGGTATAAATATATAATTTGACTTCTATAATGAACAAA-TTCCTGAAATCGT-ATATATCAACATTTAATAAAT--GTTAA-ATTATAAGTGTAGTC----TTCAAATTTTGTAACCTAATGC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2035827 126 + 5179401 ATGTATGTCAGTGGGTATAAATATATAATTTGACTTCTATAATGAACAAA-TTCCTGAAATCGT-ATATATCAACATTTAATAAAT--GTTAA-ATTATAAGTGTAGTC----TTCAAATTTTGTGACCTAATGC i manLeu1.NW_012103732v1 I 331 C 0 s colAng1.NW_012115488v1 7733442 126 - 21726897 ATGTATGTCTGTGGGTATAAATATATAATTTGACTTCTATAATGAACAAA-TTCCTGAAATCGT-ATATATCAACATTTAATAAAT--GTTAA-ATTATAAGTGTAGTC----TTCAAATTTTGTGACCTAATGC i colAng1.NW_012115488v1 C 0 I 18 s calJac3.chr2 112551463 122 + 204313951 ATGTATGGCAGTGGGTATAAATATATAATTTGACTTCTTTAATGAACGAA-TTCCTAAAATTAT-ATATATCAACATTTAATAAAT--GTTAA-----TAAGTGTAGTC----TTCAAATTTTGTAACCTAATGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44999175 127 + 71252344 ATGTCTGGCAGTGGGTATAAATATATAATTTGACTACTATAGTGAGTGAA-TTCCTAAAATTAT-ATATATCAACATTTAATACAT--GTTAATATTGTAAGTGTAGTC----TTCAAATTTTGTAACCTAATGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 362083 127 - 1393929 ATGTATGGTAGTGGGTATAAATATATAATTTGACTTCTATAATGAAAGAA-TTCCTAAAATTAT-ATATATCAACATTTAATTAAT--GTTAATATTATAAATGTAGTC----TTCAAATTTTGTAAACTAATGC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1435429 127 - 15889662 ATGTATGGCGGTGGGTATAAATATATAATTTGACTTCTATAATGAACGAA-TTCCTAAAATTAT-ATATATCAACATTTAATAAAT--GTTAATATCATAAGTGTTGTC----TTCAAATTTTGTAACCTAATGC i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14330076 115 + 91889043 ------------------GTATATGTAATTTGATGTATGTAATGAACAGA-TTCCTGAAATCACAATGAATTGACatttaatatattaaataa-attGTAAATGTAGATACAATTCAAGCTCTCTGACCTCATGC i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I a score=10920.000000 s hg38.chr5_GL383530v1_alt 64251 1 + 101241 A s panTro5.chr5 20297087 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309412 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4796165 1 - 13748885 A i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827892 1 - 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87851027 1 - 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87955453 1 - 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1182963 1 - 8785636 A i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1646568 1 + 27333823 A i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916541 1 - 91010382 A i chlSab2.chr4 C 0 I 35 s manLeu1.NW_012103732v1 2035953 1 + 5179401 A i manLeu1.NW_012103732v1 C 0 C 0 s calJac3.chr2 112551585 1 + 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44999302 1 + 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 362210 1 - 1393929 A i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1435556 1 - 15889662 A i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14330191 1 + 91889043 A i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I e colAng1.NW_012115488v1 7733568 18 - 21726897 I a score=13407.000000 s hg38.chr5_GL383530v1_alt 64252 5 + 101241 AAACC---- s panTro5.chr5 20297088 5 + 181907262 AAACC---- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309413 5 + 183735486 AAACC---- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4796166 5 - 13748885 AAACC---- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827893 5 - 163208435 AAACC---- i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 112551586 5 + 204313951 AAACT---- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44999303 5 + 71252344 AAACT---- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 362211 5 - 1393929 AAACT---- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1435557 5 - 15889662 AAACT---- i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14330192 9 + 91889043 AAACCCTTC i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I e colAng1.NW_012115488v1 7733568 18 - 21726897 I e manLeu1.NW_012103732v1 2035954 0 + 5179401 C e chlSab2.chr4 1916542 35 - 91010382 I e cerAty1.NW_012002401v1 1646569 0 + 27333823 C e macNem1.NW_012011400v1 1182964 0 - 8785636 C e macFas5.chr6 87955454 0 - 181584905 C e rheMac8.chr6 87851028 0 - 180051392 C a score=175333.000000 s hg38.chr5_GL383530v1_alt 64257 46 + 101241 AAGTGCCTTTAAAAAAT--ATCTATAAAATggacaggcatggtggctc s panTro5.chr5 20297093 46 + 181907262 AAGTGCCTTTAAAAAAT--ATCTATAAAATggccaggcatggtggctc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309418 46 + 183735486 AAGTGCCTTTAAAAAAT--ATCTATAAAATggccaggcatggtggctc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4796171 46 - 13748885 AAGTGCCTTTAAAAAAT--ATCTATAAAATggccaggcatggtggctc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827898 46 - 163208435 AAGTGCCTTTAAAAAAT--ATCTATAAAATggccaggcgtggtggctc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87851028 29 - 180051392 -----CCCTT--------------TAAAAAggcaaggcatggtggtgc i rheMac8.chr6 C 0 I 2 s macFas5.chr6 87955454 29 - 181584905 -----CCCTT--------------TAAAAAggcaaggcatggtggtgc i macFas5.chr6 C 0 I 2 s macNem1.NW_012011400v1 1182964 29 - 8785636 -----CCCTT--------------TAAAAAggcaaggcatggtggtgc i macNem1.NW_012011400v1 C 0 I 2 s cerAty1.NW_012002401v1 1646569 29 + 27333823 -----CCCTT--------------TAAAAAggcaaggcatggtggtgc i cerAty1.NW_012002401v1 C 0 I 2 s manLeu1.NW_012103732v1 2035954 29 + 5179401 -----CCCTT--------------TAAAAAggcaaggcatggtggtgc i manLeu1.NW_012103732v1 C 0 I 2 s colAng1.NW_012115488v1 7733586 46 - 21726897 AAGTACCTTTAAAAAAT--ATGTATAAAAAGCCAAggcatggtggtgc i colAng1.NW_012115488v1 I 18 I 2 s calJac3.chr2 112551591 44 + 204313951 ---AGCCTTAAAAAAAA-AATCTATAAAATggcagggcatggtagctc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44999308 44 + 71252344 ---AGCCTTTAAAAAAA-CATCTATAAAATggcagggcacagtagctc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 362216 43 - 1393929 ---AGCCTTTAAAAAAA--ATCTATAAAATggcagggcacggtagctc i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1435562 43 - 15889662 ---AGCCTTTAAAAAGA--ATCTATAAAATggcagggcacggtcgctc i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14330201 45 + 91889043 AAGTGTCTTTTTTAAAATAATCTGTAAAATGA-AGGATATAAATGT-- i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I e chlSab2.chr4 1916542 35 - 91010382 I a score=230234.000000 s hg38.chr5_GL383530v1_alt 64303 21 + 101241 acgcctttaatcccagcactt s panTro5.chr5 20297139 21 + 181907262 acgcctttaatcccagcactt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309464 21 + 183735486 acgcctttaatcccagcactt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4796217 21 - 13748885 acgcctttaatcccagcactt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827944 21 - 163208435 acgcctttaatcccagcactt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87851059 21 - 180051392 acgcctgtaatcccagcactt i rheMac8.chr6 I 2 C 0 s macFas5.chr6 87955485 21 - 181584905 acgcctgtaatcccagcactt i macFas5.chr6 I 2 C 0 s macNem1.NW_012011400v1 1182995 21 - 8785636 acgcctgtaatcccagcactt i macNem1.NW_012011400v1 I 2 C 0 s cerAty1.NW_012002401v1 1646600 21 + 27333823 acgcctgtaatcccagcactt i cerAty1.NW_012002401v1 I 2 C 0 s chlSab2.chr4 1916577 21 - 91010382 acgcctgtaatcccagcactt i chlSab2.chr4 I 35 C 0 s manLeu1.NW_012103732v1 2035985 21 + 5179401 acgcctgtaatcccagcactt i manLeu1.NW_012103732v1 I 2 C 0 s colAng1.NW_012115488v1 7733634 21 - 21726897 acgcctgtaatcccagcactt i colAng1.NW_012115488v1 I 2 C 0 s calJac3.chr2 112551635 21 + 204313951 acacctgtaatcccagcactt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44999352 21 + 71252344 atacctgtaatcccagcactt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 362259 21 - 1393929 acacctgtaatcccagcactt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1435605 21 - 15889662 acacctgtaatcccagcactt i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14330246 18 + 91889043 ---CCTTTTATCTCTGTAATT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I a score=948254.000000 s hg38.chr5_GL383530v1_alt 64324 119 + 101241 tgggaggccgaggggggtggatcacgagt--tcaagagatggagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattggctgggtgtggtggtggcacacgc s panTro5.chr5 20297160 119 + 181907262 tgggaggccgagggggttggatcacgagg--tcaagagatggagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggtggcacacgc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309485 119 + 183735486 tgggaggccgaggggggtggatcacgagg--tcaagagatggagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggtggcacacgc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4796238 119 - 13748885 tgggaggccgaggggggtggatcacaagg--tcaagagatggagaccatcctggccaacatggggaaaccctgtctctactaaaaatacaaaaattggctgggtgtggtggtggcacacgc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53827965 121 - 163208435 tgggaggccaaggggggcagatcacgaggtctcaagagatggagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtgatggtggcacacgc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87851080 97 - 180051392 tggaaggccaaggtgggtggatcacgagg--tcaagag-------------------acatggtgaaaccctgtctgtactgaaaatacaaaaattagctgggtg---tggtggcacgtga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87955506 97 - 181584905 tggaaggccaaggtgggtggatcacgagg--tcaagag-------------------acatggtgaaaccctgtctgtactgaaaatacaaaaattagctgggtg---tggtggcacgtgt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1183016 97 - 8785636 tggaaggccaaggtgggtggatcacgagg--tcaagag-------------------acatggtgaaaccctgtctgtactgaaaatacaaaaattagctgggtg---tggtggcacgtga i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1646621 116 + 27333823 tggaaggccaaggtgggtggatcacgagg--tcaagagacggagaacatcctggccaacatggtgcaaccctgtctgtactgaaaatacaaaaattagctgggtg---tggtggcacgcga i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916598 115 - 91010382 tggaaggccgaggtgggtggatcacgagg--tcaagagacggagaccatcctggccaacatggtgaaaccctgtctgtactgaaaatacaaaaattagctgggtg---tggtgccacg-ga i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2036006 116 + 5179401 tggaaggccaaggtgggtggatcacgagg--tcaagagacggagaacatcctggccaacatggtgaaaccctgtctgtactgaaaatacaaaaattagctgggtg---tggtggcacgtga i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7733655 116 - 21726897 tggaaggctgaggtgggtggatcacgagg--tcaagagatggagaacatcctggccaacatggtgaaaccctgtctgtactgaaaatacaaaaattagctgggtg---tggtggcacgtga i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112551656 116 + 204313951 aaagaggccgaggcaggtggatcatgagg--tcaagagattgagaccatcctgaccaacacagtgaaaccctgtctctactaaaaatacaaaaattagttggacg---tggtggtgcagac i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44999373 116 + 71252344 aaagaggccgaggtgggaggatcatgagg--tcaagagattgagaccatcctggccaacacggtgaaactctgtctctactaaaaatacaaaaattagttggacg---tggtggtgcaggc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 362280 116 - 1393929 aaagaggccgaggcgggtggatcatgagg--tcaagagattgagaccatcctggccaacacggtgaaaccctgtctctactaaaaatacaaaaattaattggacg---tggtggtgcaggc i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1435626 116 - 15889662 aaaggggccaaggcgagcagatcatgagg--tcaagagattgagatcatcctggccaacagggtgaaaccctgtgtctactaaaaatacaaaaattagttggaca---tggtgatgcaggc i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14330264 0 + 91889043 C e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I a score=204243.000000 s hg38.chr5_GL383530v1_alt 64443 21 + 101241 ctgaagtcccagctactcagg s panTro5.chr5 20297279 21 + 181907262 ctgaagtcccagctactcagg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309604 21 + 183735486 ctgaagtcccagctactcagg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4796357 21 - 13748885 ctgaagtcccagctattcagg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53828086 21 - 163208435 ctgtagtcccagctactcagg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87851177 21 - 180051392 ctgtagtcccagctactccgg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87955603 21 - 181584905 ctgtagtcccagctactccgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1183113 21 - 8785636 ctgtagtcccagctactccgg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1646737 21 + 27333823 ctgtagtcccagctactcggg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916713 21 - 91010382 ctgtagtcccagctactgggg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2036122 21 + 5179401 ctgtagtcccagctactcggg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7733771 21 - 21726897 ctgtagtcccagctactcggg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112551772 21 + 204313951 ctgtagtccctgcaactcggg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44999489 21 + 71252344 ctgtagtccctgcaactcagg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 362396 21 - 1393929 atgtagtccctgcaactcggg i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1435742 21 - 15889662 ctgtagtccctgcaactcggg i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14330264 21 + 91889043 CTATGATACCTGCTACTTAGG i canFam3.chr3 C 0 I 122 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I a score=274726.000000 s hg38.chr5_GL383530v1_alt 64464 26 + 101241 aggctgaggcaggaaaattgcttgaa s panTro5.chr5 20297300 26 + 181907262 aggctgaggcaggaaaattgcttgaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309625 26 + 183735486 aggctgaggcaggaaaattgcttgaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4796378 26 - 13748885 aggctgaggcaggaaagttgcttgaa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53828107 26 - 163208435 aggctgaggcaggaaaattgcttgaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87851198 26 - 180051392 aggctgaggcaggagaattgcttgaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87955624 26 - 181584905 aggctgaggcaggagaattgcttgaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1183134 26 - 8785636 aggctgaggcaggagaattgcttgaa i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1646758 26 + 27333823 aggctgaggcaggagaattgcttgaa i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916734 26 - 91010382 aggctgaggcaggagaattgcttgaa i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2036143 26 + 5179401 aggctgaggcaggagaattgcttgaa i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7733792 26 - 21726897 aggctgaggcaggagaattgcttgaa i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112551793 26 + 204313951 aggctgaggcaagagaatcacttgaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44999510 26 + 71252344 aggctgaggcaggagaatcacttgaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 362417 26 - 1393929 aggctgaggcaggagaatcacttgaa i cebCap1.NW_016107830v1 C 0 I 321 s aotNan1.NW_018506370v1 1435763 26 - 15889662 aggctgaggcaggagaatcacttgaa i aotNan1.NW_018506370v1 C 0 I 314 e canFam3.chr3 14330285 122 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I a score=16064.000000 s hg38.chr5_GL383530v1_alt 64490 3 + 101241 tcc s panTro5.chr5 20297326 3 + 181907262 ccc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309651 3 + 183735486 ccc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4796404 3 - 13748885 ccc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53828133 3 - 163208435 ccc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87851224 3 - 180051392 cgt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87955650 3 - 181584905 cct i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1183160 3 - 8785636 cct i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1646784 3 + 27333823 cct i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916760 3 - 91010382 cct i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2036169 3 + 5179401 cct i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7733818 3 - 21726897 cct i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112551819 3 + 204313951 ccc i calJac3.chr2 C 0 I 320 s saiBol1.JH378106 44999536 3 + 71252344 ccc i saiBol1.JH378106 C 0 I 320 e canFam3.chr3 14330285 122 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I e aotNan1.NW_018506370v1 1435789 314 - 15889662 I e cebCap1.NW_016107830v1 362443 321 - 1393929 I a score=998941.000000 s hg38.chr5_GL383530v1_alt 64493 187 + 101241 gagaggcggaagttgtagtgagccgagatcatgccactgcactccagcctggtgacagagtgagactccgtctcaaaaaaacaaacaaaaTCTATAAAATGAGAGATAGAAATGTCCTGTCTCTAAAATGTCATGATTCTCAGTCTCCAGAGATTCTTAATTTTTTTTCTTAtaacagcttcattga s panTro5.chr5 20297329 186 + 181907262 gagaggcggaagttgtagtgagccgagatcatgccactgcactccagcctggtgacagagtgagactccgtctcaaaaaaacaaacaaaaTCTATAAAATGAGAGATAGAAATGTCCTATCTCTAAAATGTCATGATTCTCAGTCTCCAGAGATTCTTAATTTTTTTTCTTAtaacagcttc-ttga i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309654 185 + 183735486 gagaggcggaagttgtagtgagccgagatcatgccactgcactccaacctggtgacagagtgagactccgtctcaaaaaaacaaacaaaaTCTATAAAATGAGAGATAGAAATGTCCTATCTCTAAAATGTCATGATTCTCAGTCTCCAGAGATTCTTAA-TTTTTTTCTTAtaacagcttc-ttga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4796407 187 - 13748885 gagaggcggaagttgtagtgagccgagatcatgccactgcactgcagcctggtgacagagtgagactccgtctcaaaaaaacaaacaaaaTCTATAAAATGAGAGATAGAAATGTCCTATCTCTAAAATGTCATGATTCTCAGTCTCCAGAGATTCTTAATTTTTTTTCTTAtaacagcttcattga i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53828136 185 - 163208435 gagaggcggaagttgcagtgagccaagatcacgccactgcactccagcctggcgaccgagtgagactccgtctcaaaaaaacaaacaaaaTCTATAAAATGAGAGATAGAAATGTCCTATCTCTAAAATGTCATGATTCTCAGTCTCCAGAGATTCTTA--TTTTTTTCTTataacagcttcattga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87851227 181 - 180051392 gggaggcggaggttgcagtgagcagagatcacgccactgtactccagcctggcgacagagtgagtctccatctcaaaaaaccaaacaaaaTCTATAAAATGAGAGATAGAAATGTC------CTAAAATTTCATGATTCTCAGTCTCCAGAGATTATTAATTTTTTTTCttgtaacagcttcattga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87955653 181 - 181584905 gggaggcggaggttgcagtgagcagagatcacgccactgtactccagcctggcgacagagtgagtctccatctcaaaaaaccaaacaaaaTCTATAAAATGAGAGAGAGAAATGTC------CTAAAATTTCATGATTCTCAGTCTCCAGAGATTATTAATTTTTTTTCttgtaacagcttcattga i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1183163 181 - 8785636 gggaggcggaggttgcagtgagcagagatcacgccactgtactccagcctggcgacagagtgagtctccatctcaaaaaaccaaacaaaaTCTATAAAATGAGAGATAGAAATGTC------CTAAAATTTCATGATTCTCAGTCTCCAGAGATTATTAATTTTTTTTCttgtaacagcttcattga i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1646787 181 + 27333823 gggaggcagaggttgcagtgagcagagatcacgccactgtactccagcctggcgacagagtgagtctccatctcaaaaaaccaaacaaaaTCTATAAAATGAGAGATAGAAATGTC------CTAAAATTTCATGATTCTCAGTCTCCAGAGATTATTAATTTTTTTTCttgtaacagcttcattga i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916763 186 - 91010382 gggaggcggaggttgcagtgagccgagatcacgcccctgcactccagcctggtgacagagtgagtctccatctcaaaaaaccaaacaaaaTCTATAAAATGAGAGATAGAAATGTCCTTTCTCTAAAATTTCATGATTCTCAGTCTCCAGGGATTATTAA-TTTTTTTCttgtaacagcttcattga i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2036172 181 + 5179401 gggaggcggaggttgcagtgagcagagatcacgccactgtactccagcctggcgacagagtgagtctccatctcaaaaaaccaaacaaaaTCTATAAAATGAGAGATAGAAATGTC------CTAAAATTTCATGATTCTCAGTCTCCAGAGATTATTAATTTTTTTTCttgtaagagcttcattga i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7733821 187 - 21726897 gggaggcggaggttgcagtgagccgagatcacaccactgcactccagcctggcgacagagtgagtctctgtttcaaaaaaccaaacaaaaTCTATAAAATGAGAGATAGAAATGTCCTTTCTCTAAAATTTCATGATTCTCAGTCTCCAGAGATTATTAATTTTTTTTCttgtaacagcttcattga i colAng1.NW_012115488v1 C 0 C 0 e canFam3.chr3 14330285 122 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I e aotNan1.NW_018506370v1 1435789 314 - 15889662 I e cebCap1.NW_016107830v1 362443 321 - 1393929 I e saiBol1.JH378106 44999539 320 + 71252344 I e calJac3.chr2 112551822 320 + 204313951 I a score=3950527.000000 s hg38.chr5_GL383530v1_alt 64680 643 + 101241 gatataattcacatactatac---------aattcactcataacccccaaaagaaaccctgtacccattaccattcagtctctattac-ctccagtcccctgaaccctaggcaaccactaatctgtgttctgtcactattgttt--------ttctgagcatttaatataaatggaat--tacagtatgtaatcttatgtgtctg---------acttagcatgatgttttcagggttcatctatgttataacatgtattagtacttcattaatttttattgccaaataatattcc-ttatatgaatataccatgttttatttattcactcattgatttatgagcatttgaattgttgcca--------cttttatgaattatagtgttactatgaacaattgtgttcatttgtacatgtgtttttatttctcttgggcatataaccaggagtggaattgctagatcatatggaagctctatgtttagcttttcaaggaacttccagactattttccaaagtggatatactattttatattcccaccagcagtgtatgaatatcctagtttttccacatccttgtcaacacttgttattttccattttcttgattgtagttatgttagtgagtgtgaaatattatttcattgtggtcttgatttgcatttccctaatggat s panTro5.chr5 20297515 640 + 181907262 gatataattcacatactatac---------aattcactcataacccccaaaagaaaccctgtacccattaccattcagtctctattac-ttccagtcccctgaaccctaggcaaccattaatctatgttctgtcactattgttt--------ttctgaacatttaatataaatggaat--tacagtatgtaatcttatgtgtctg---------acttagcatgatgttttcagggttcatctatgttataacatgtattagtgcttcattaatttttattgccaaataatattcc-ttatatgaatataccatgttttatttattcactcattgatttatgagcatttgaattgttgcca--------cttttatgaattatagtgttactatgaacatttgtgttcatttgtacatatgtttttatttctcttgggcatataaccaggagtggaattgttaggtcatatggaagctctatgtttagcttttcaaggaacttccagactattttccaaagtggatatactattttatattcccaccagcagtgtatgaatatcccagtttttccacatccttgtcaacacttgttcttttccattttcttgattgtagttatgttagtgagtgtgaaa---tatttcattgtggtcttgatttgcatttccctaatggat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20309839 640 + 183735486 gatataattcacatactatac---------aattcactcataacccccaaaagaaaccctgtacccattaccattcagtctctattac-ttccagtcccctgaaccctaggcaaccattaatctatgttctgtcactattgttt--------ttctgaacatttaatataaatggaat--tacagtatgtaatcttatgtgtctg---------acttagcatgatgttttcagggttcatctatgttataacatgtattagtacttcattaatttttattgccaaataatattcc-ttatatgaatataccatgttttatttattcactcattgatttatgagcatttgaattgttgcca--------cttttatgaattatagtgttactatgaacatttgtgttcatttgtacatatgtttttatttctcttgggcatataaccaggagtggaattgttagatcatatggaagctctatgtttagcttttcaaggaacttccagactattttccaaagtggatatactattttatattcccaccagcagtgtatgaatatcccagtttttccacatccttgtcaacacttgttcttttccattttcttgattgtagttatgttagtgagtgtgaaa---tatttcatcgtggtcttgatttgcatttccctaatggat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4796594 640 - 13748885 gatataattcacatactatac---------aattcactcataacccccaaaagaaaccctgtacccattaccattcagtctctattac-ttccagtcccctgaaccctaggcaaccactaatctatgttctgtcactattgttt--------ttctgaacatttaatataaatggaat--tacagtatgtaatcttatgtgtctg---------acttagcgtgatgttttcagggttcatctatgttataacatgtattagtacttcattaatttttattgccaaataatattcc-ttatatgaatataccatgttttatttattcactcattgatttatgagcatttgaattgttgcca--------cttttataaattatagtgttactatgaacatttgtgttcatttgtacatatgtttttatttctcttgggcatataaccaggagtggaattgctagatcatatggaagctctatgtttagcttttcaaggaacttccagactattttccaaagtggatatactattttatattcccaccagcagtgtatgaatatcccagtttttccacatctttgtcaacacttgttattttccattttcttgattgtagttatgttagtgagtgtgaaa---tatttcattgtggtcttgatttgcatttccctaatggat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53828321 642 - 163208435 gatataattcgcatactatac---------aattcactcataacccccaaaagaaaccctgtacccattaccattcagtctctattac-ctccagtcccctgaaccctaggcaactactaatctatgttctgtcactattgttt--------ttctgaacatttaatataaatggaattatacagtatgtaatcttttgtgtctg---------acttagcatgatgttttcagggttcatctatgttataatgtgtattagtacttcattaatttttattgccaaataatattcc-ttatatgaatataccatattttatttattcactcattgatttatgagcatttgaattattgcca--------cttttatgaattatagtgttactatgaacatttgtgttcatttgtacatatgtttttatttctgttgggcatataaccaggagtggaattgctggatcatatggaaactctatgtttagctttttaaagaacttccagactgttttccaaagtggatatactatattatattcccaccagcagtgtatgaatatcccagtttttccacatccttgtcaacacttgttattttccattttcttaatt---gtcatgttagtgagtgtgaaatattatttcattgtggtcttgatttgcatttccctaatggat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87851408 661 - 180051392 gatgtaattcacatactatac----------attcactcataacccccaaaagaaaccctgtacccattaccactcagtctctattat-ctccagtcccctgaaccctaggcaaccgctaatctatgttctgtcactattgtttttcttttattctgaacatttaatataaatggaattatgcagtatgtaatcttatgtgtctgactttgttaacttagcatcatgttttcagggttcatctatgttataacaagtattagtacttcattaatttttattgccagataatattcc-ttatatgaatataccatgttttatttactcactcattgatttatgagcatttgaattgttgtca--------cttttatgaattagagtattactatgaacatttgtgttcatttgtacatatgtttttatttctcttggacatataaccaggagtgaaattgctggatcatatggaaactctatgtctagctttttaaagaacttccagcctattttccaaagtggatatactattttatattcccaccagcagtgtatgagtatctcagtttttacacatccttgtcaacacttgttattttccgttttcttgattgtagtcatgttagtgagtgtgaaatattctttcattgtggtcttgattttaatttccccagtggat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87955834 661 - 181584905 gatgtaattcacatactatac----------attcactcataacccccaaaagaaaccctgtacccattaccactcagtctctattat-ctccagtcccctgaaccctaggcaaccgctaatctatgttctgtcactattgtttttcttttattctgaacatttaatataaatggaattatgcagtatgtaatcttatgtgtctgactttgttaacttagcatcatgttttcagggttcatctatgttataacaagtattagtacttcattaatttttgttgccagataatattcc-ttatatgaatataccatgttttatttactcactcattgatttatgagcatttgaattgttgtca--------cttttatgaattacagtattactatgaacatttgtgttcatttgtacatatgtttttatttctcttggacatataaccaggagtgaaattgctggatcatatggaaactctatgtctagctttttaaagaacttccagcctattttccaaagtggatatactattttatattcccaccagcagtgtatgagtatctcagtttttacacatccttgccaacacttgttattttccgttttcttgattgtagtcatgttagtgagtgtgaaatattctttcattgtggtcttgattttaatttccccagtggat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1183344 661 - 8785636 gatgtaattcacatactatac----------attcactcataacccccaaaagaaaccctgtacccattaccactcagtctctattat-ctccagtcccctgaaccctaggcaaccgctaatctatgttctgtcactattgtttttcttttattctgaacatttaatataaatggaattatgcagtatgtaatcttatgtgtctgactttgttaacttagcataatgttttcagggttcatctatgttataacaagtattagtacttcattaatttttattgccagataatattcc-ttatatgaatataccatgttttatttactcactcattgatttatgagcatttgaattgttgtca--------cttttatgaattatagtattactatgaacatttgtgttcatttgtacatatgtttttatttctcttggacatataaccaggagtgaaattgctggatcatatggaaactctatgtctagctttttaaagaacttccagcctattttccaaagtggatatactattttatattcccaccagcagtgtatgagtatctcagtttttacacatccttgtcaacacttgttattttccgttttcttgattgtagtcatgttagtgagtgtgaaatattctttcattgtggtcttgattttaatttccccagtggat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1646968 661 + 27333823 gatataattcacatactatac----------attcactcataacccccaaaagaaaccctgtacccattaccactcagtctctattat-ctccagtcccctgaaccctaggcaaccactaatctatgttctgtcactattgtttttcttttattctgaacatttaatataaatggaattatgcagtatgtaatcttatgtgtctgactttgttaacttagcataatgttttcagggttcatctatgttataacaagtattagtacttcattaatttttattgccagataatattcc-ttatatgaatataccatgttttatttactcactcattgatttatgagcatttgaattgttgtca--------cttttatgaattacagtattactatgaacatttgtgttcatttgtacatatgtttttatttctcttggacatataaccaggagtgaaattgctggatcatatggaaactctatgtctagctttttaaagaacttccagcctattttccaaagtggatatactattttatattcccaccagcagtgtatgagtatctcagtttttacacatccttgtcaacacttgttattttccgttttcttgattgtagtcatgttagtgagtgtgaaatattctttcattgtggtcttgattttaatttccccagtggat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1916949 661 - 91010382 gatataattcacatactatac----------attcactcaGAacccccaaaagaaaccctgtacccattaccactcagtccctattat-ctccagtcccctgaaccctaggcaaccgctaatctatgttctgtcactattgtttttcttttattctgaacatttaatataaatggaattatacagtatgtaatcttatgtgtctgactttgttaacttagcataatgttttcggggttcatctatgttataacaagtattagtacttcattaatttttattgccaaataatattcc-ttatatgaatataccatgttttatttattcactcattgatttatgagcatttgaattgttgtca--------cttttatgaattatagtattactatgaacatttgtgttcatttgtacatatgtttttatttctcttggacatgtaaccaggagtggaattgctggatcatatggaaactctatgtttagctttttaaagaacttccagcctattttccaaagtggatatactattttatgttcccaccagcagtgtatgagtatctcagtttttacacatccttgtcaacacttgttattttccgttttcttgattgtagtcatgttagtgagtgtgaaatattatttcattgtggtcttgatttgcatttccgcagtggat i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2036353 657 + 5179401 gatataattcacatactatac----------attcactcataacccccaaaagaaaccctgtacccattaccactcagtctctattat-ctccagtcccctgaaccctaggcaaccgctaatctatgttctgtcactattgtttttcttttattctgaacatttaatataaatggaattatgcagtatgtaatcttatgtgtctgactttgttaacttagcataatgttttcagggttcatctatgttataacaagtattagtacttcattaatttttattgccagataatattcc-ttatatgaatataccatgttttattt----actcattgatttataagcatttgaattgttgtca--------cttttatgaattatagtattactatgaacatttgtgttcatttgtacatatgtttttatttctcttggacatataaccaggagtgaaattgctggatcatatggaaactctatgtctagctttttaaagaacttccagcctattttccaaagtggatatactattttatattcccaccagcagtgtatgagtatctcagtttttacatatccttgtcaacacttgttattttccgttttcttgattgtagtcatgttagtgagtgtgaaatattctttcattgtggtcttgattttaatttccccagtggat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7734008 648 - 21726897 gatataattcacatactatac----------attcactcataacccccaaaa-aaaccctgtacccattaccactcagtctctattat-ctctagtcccctgaaccctaggcaaccactaatctatgttctgtcactattgtttttcttttattctgaatatttaatataaatggaattatacagtatgtaatcttatgtgtctgactttgttaacttagcataatgttttcagggttcatctatgttataacaagtattagtacctcattaatttttattgcca---aatattcc-ttatatgaatatac--tgttttattc----actcattgatttatgagcatttgaattgtt-tca--------cttttatgaattatagtattgctatgaacatttgtgttcatttgtacatatatttttatttctcttgaacatataaccaggagtggaattgctggatcatatggaaactctatgtttagctttttaaataacttccagcctattttccaaagtggatatactgttttatattaccaccagcagtgtatgagtatct--ggttttccacatccttgttaacacttgttattttctgttttcttgattgtagtcatgttagtgagtgtgaaatattatttcattgtggtcttgatttgcatttccccagtgGAT i colAng1.NW_012115488v1 C 0 M 4718 s canFam3.chr3 14330407 654 + 91889043 gacagaattgtcaaacaatcataatttgggaacatgtttatcatcccccaaagaaatcccatacccattatcactcattcttcatttcattccaacctcctgacccctaggcaaccactaatctacattctgttagtatagattttccta--ttctgaac-tttcctataaatgcaattatacaatatgttgtcttttgtgtctggcatctctcatttagcataatgttttcaagatttatccatgttgtaccatatatcagt-----attaatttttattgccaaataacactccattgtaaaggtatatcacattttatttatccattcactaattgatgagcatttggattgct-tcactatttggctattatgaat---aatgttgctctgaacatttgtgttcacttgtacacatgttttca-ttctctagggtgtataactaggggtagaatttttgagtcatatggtatctccatatgtaaactt----aaaactcccag----tttcccaaaat-gacgcatcactttacattcctaccaggagtatatgaagattctactttctccatatcatcaccaatatttgttattatctgtcttcttgattataaccatctt----ggtttgaaataacatctcat-gtggttttgattcgcatttctctcatggat i canFam3.chr3 I 122 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I e aotNan1.NW_018506370v1 1435789 314 - 15889662 I e cebCap1.NW_016107830v1 362443 321 - 1393929 I e saiBol1.JH378106 44999539 320 + 71252344 I e calJac3.chr2 112551822 320 + 204313951 I a score=37664.000000 s hg38.chr5_GL383530v1_alt 65323 7 + 101241 aatgatg s panTro5.chr5 20298155 7 + 181907262 aatgatg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20310479 7 + 183735486 aatgatg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4797234 7 - 13748885 aatgatg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53828963 7 - 163208435 aatgatg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87852069 7 - 180051392 aatgatg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87956495 7 - 181584905 aatgatg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1184005 7 - 8785636 aatgatg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1647629 7 + 27333823 aatgatg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1917610 7 - 91010382 aatgatg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2037010 7 + 5179401 aatgatg i manLeu1.NW_012103732v1 C 0 C 0 s canFam3.chr3 14331061 7 + 91889043 aacagta i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I e aotNan1.NW_018506370v1 1435789 314 - 15889662 I e cebCap1.NW_016107830v1 362443 321 - 1393929 I e saiBol1.JH378106 44999539 320 + 71252344 I e calJac3.chr2 112551822 320 + 204313951 I e colAng1.NW_012115488v1 7734656 4718 - 21726897 M a score=269165.000000 s hg38.chr5_GL383530v1_alt 65330 41 + 101241 ttgatcttcttttcatgtgcttattggccatgtgtttatct s panTro5.chr5 20298162 41 + 181907262 ttgatcttcttttcatgtgcttattggccatgtgtttatct i panTro5.chr5 C 0 C 0 s panPan2.chr5 20310486 41 + 183735486 ttgatcttcttttcatgtgcttattggccatgtgtttatct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4797241 41 - 13748885 ttgatcttcttttcatgtgcttattggccatgtgtttatct i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53828970 41 - 163208435 ttgatcttcttttcatgtgcttattggccatgtgtttatct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87852076 41 - 180051392 ttgatcttcttttcatgtgcttattggccatgtgtttatct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87956502 41 - 181584905 ttgatcttcttttcatgtgcttattggccatgtgtttatct i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1184012 41 - 8785636 ttgatcttcttttcatgtgcttattggccatgtgtttatct i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1647636 41 + 27333823 ttgatcttcttttcatgtgcttattggccatgtgtttatct i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1917617 41 - 91010382 ttgatcttcctttcatgtccttattggccatgtgtctatct i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2037017 41 + 5179401 ttgatcttcttttcatgtgcttattggccatgtgtttatct i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7739568 41 - 21726897 ttgatcttcttttcatgtgcttattggccatgtgtttatct i colAng1.NW_012115488v1 M 4718 C 0 s canFam3.chr3 14331068 41 + 91889043 ctgtgcatcttttcctgtgctgactgaccacttgtatttct i canFam3.chr3 C 0 I 125 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I e aotNan1.NW_018506370v1 1435789 314 - 15889662 I e cebCap1.NW_016107830v1 362443 321 - 1393929 I e saiBol1.JH378106 44999539 320 + 71252344 I e calJac3.chr2 112551822 320 + 204313951 I a score=2783351.000000 s hg38.chr5_GL383530v1_alt 65371 470 + 101241 tctttggagaaatgtctgttcatatcctttgcccatttttaaattggctcattagtttttacattatttagcttttattattgtgctaaatattgtgtgtaaatattgtgtgtattgtgtgtaaaagttcttt---atatattctagatacaagtcccttatcaaacatgatttgcaaatagcttttcctgttctgtggggtgcctgttcactttcttgttggtatcctttgaaacgcaaattatttcacattaattttgatgaagtaccgttattttttcttttcttgctgtgcttt-------ttgtgtcagacaccattgtctaattcaagttcctggagaatcatacctgtgttttcttctaagagttttatagctttagcttttacctttagttctttgatgtattttgagttaatttt-tt-atataatatgtggtaggagtccaactttaattttttctatgaagatatacaatt s panTro5.chr5 20298203 437 + 181907262 tctttggagaaatgtctgttcatatcctttgcccatttttaaattggctcattagtttttacattatttagcttttattattg-----aat----------------------------tgtaaaagttcttt---atgtattctagatacaagtcccttatcaaacatgatttgcaaatagcttttcctgttctgtggggtgccttttcactttcttgttggtatcctttgaaacgcaaattatttcacataaattttgatgaagtaccattattttttcttttcttgctgtgcttt-------ttgtgtcggaaaccattgtctaattcaagttcctggagaatcacacctgtgttttcttctaagagttttatagctttagcttttacctttagttctttgatgtattttgagttaatttt-tt-atataatatgtggtaggagtccaactttatttttttctatgaagatatacaatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20310527 437 + 183735486 tctttggagaaatgtctgttcatatcctttgcccatttttaaattggctcattagtttttacattatttagcttttattattg-----aat----------------------------tgtaaaagttcttt---atatattctagatacaagtcccttatcaaacatgatttgcaaatagcttttcctgttctgtggggtgccttttcactttcttgttggtatcctttgaaacgcaaattatttcacataaattttgatgaagtaccattattttttcttttcttgctgtgcttt-------ttgtgtcggaaaccattgtctaattcaagttcctggagaatcacacctgtgttttcttctaagagttttatagctttagcttttacctttagttctttgatgtattttgagttaatttt-tt-atataatatgtggtaggagtccaactttatttttttctatgaagatatacaatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4797282 437 - 13748885 tctttggagaaatgtctgttcatatcctttgcccatttttaaattggctcattagtttttacattatttagcttttattattg-----aat----------------------------tgtaaaagttcttt---atatattctagatacaagtcccttatcaaacatgatttgcaaatagcttttcctgttctgtggggtgccttttcactttcttgttggtatcctttgaaacgcaaattatttcacataaattttgatgaagtaccattattttttcttttcttgctgtgcttt-------ttgtgtcagaaaccattgtctaattgaagttcctggagaatcacacctgtgttttcttctaagagttttatagctttagcttttacctttagttctttgatgtattttgagttaatttt-tt-atataatatgtggtaggagtccaactttatttttttctatgaagatatacaatt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53829011 436 - 163208435 tctttggagaaatgtctgttcatatcctttgcccatttttaaattggctcattagtttttacattatttagcttttattattg-----aat----------------------------tgtgaaagttcttt---atatattctagatacaagt-ccttatcaaacatggtttgcaaatagcttttcccattctgtggggtgccttttcactttcttgttggtatcctttgaaatgcaaattatttcacataaattttgatgaagtaccattattttttcttttattgctgtgcttt-------ttgtgtcagaaaccattgtccaattcaagttcctggagaatcacacctgtgttttcttctaagagttttatagctttagcttttacctttagttctttgatgtattttgagttaatttt-tt-atataatatgtggtaggagtccaactttatttttttctatgaagatgtacaatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87852117 437 - 180051392 tttttggagaaatgtctgttcatatcctttgccaatttttaaattggctcattagtttttacattgtttagcttttattattg-----aat----------------------------tgtaaaggttcctt---atatattctagatacaagtcccttgtcaaacatgatttgcaaatagtttttcccattctgtggggtgccttttcactttcttgttggtatcctttgaaacgcaaattatttcacataaattttgatgaagtaccattattttttcttttcttgctgtgcttt-------ctgtgtcagaaaccattgtctaattcaagttcctggagaattacacctgtgttttcttctaagagttttatagctttagcttttacctttagttctttgatgtattttgagttaatttt-tt-atataatgtgtggtaggaatccaactttattcttgtttatgaagatatacactt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87956543 437 - 181584905 tttttggagaaatgtctgttcatatcctttgccaatttttaaattggctcattagtttttacattgtttagcttttattattg-----aat----------------------------tgtaaaggttcctt---atatattctagatacaagtcccttgtcaaacatgatttgcaaatagtttttcccattctgtggggtgccttttcactttcttgttggtatcctttgaaacgcaaattatttcacataaattttgatgaagtaccattattttttcttttcttgctgtgcttt-------ctgtgtcagaaaccattgtctaattcaagttcctggagaattacacctgtgttttcttctaagagttttatagctttagcttttacctttagttctttgatgtattttgagttaatttt-tt-atataatgtgtggtaggaatccaactttattcttgtttatgaagatatacaatt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1184053 437 - 8785636 tttttggagaaatgtctgttcatatcctttgccaatttttaaattggctcattagtttttacattgtttagcttttattattg-----aat----------------------------tgtaaaggttcttt---atatattctagatacaagtcccttgtcaaacatgatttgcaaatagtttttcccattctgtggggtgccttttcactttcttgttggtatcctttgaaacgcaaattatttcacataaattttgatgaagtaccattattttttcttttcttgctgtgcttt-------ctgtgtcagaaaccattgtctaattcaagttcctggagaattacacctgtgttttcttctaagagttttatagctttagcttttacctttagttctttgatgtattttgagttaatttt-tt-atataatgtgtggtaggaatccaactttattcttgtttatgaagatatacaatt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1647677 437 + 27333823 tttttggagaaatgtctgttcatatcctttgccaatttttaaattggctcattagtttttacattatttagcttttattattg-----aat----------------------------tgtaaaggttcctt---atatattctagatacaagtcccttgtcaaacatgatttgcaaatagtttttcccattctgtggggtgccttttcactttcttgttggtatcctttgaaacgcaaattatttcacataaattttgatgaagtaccattattttttcttttcttgctgtgcttt-------ctgtgtcagaaaccattgtctaattcaagttcctggagaattacacctgtgttttcttctaagagttttatagctttagcttttacctttagttctttgatgtattttgagttaatttt-tt-atataatgtgtcgtaggaatccaactttattcttgtttatgaagatatacaatt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1917658 437 - 91010382 tcttgggagaaatgtctgttcatatcctttgcccatttttaaattggctcattagtttttacattatttagcttttattattg-----aat----------------------------cgtaaaagttcctt---atatattctagatacaagtcccttgtcaaacatgatttgcaaatagtttttcccattctgtggggtgccttttcactttcctgttggtatcctttgaaacgcaaattatttcacataaattttgatgaagtaccattattttttcttttcttgctgtgcttt-------ctgtgtcagaaaccattgtctatttcaagttcctggagaattacacctgtgttttcttctaagagttttatagctttagcttttacctttagttctttgatgtattttgagttaatttt-tt-atataatgtgtggtaggaatccaactttattcttgtttatgaagatatacaatt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2037058 438 + 5179401 tttttggagaaatgtctgttcatatcctttgccaatttttaaattggctcattagtttttacattatttagcttttattattg-----aat----------------------------tgtaaaggttcctt---atatattctagatacaagtcccttgtcaaacatgatttgaaaatagtttttcccattctgtggggtgccttttcactttcttgttggtatcctttgaaacgcaaattatttcacataaattttgatgaagtaccattattttttcttttcttgctgtgcttt-------ctgtgtcagaaaccattgtctaattcaagttcctggagaattacacctgtgttttcttctaagagttttatagctttagcttttacctttagttctttgatgtattttgagttaatttt-ttaatataatgtgtggtaggaatccaactttattcttgtttatgaagatatacaatt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7739609 437 - 21726897 tctttggagaaatgtctgttcatatcctttgcccatttttaaattggctcattagtttttacattatttagcttttattattg-----aat----------------------------tgtaaaagttcctt---atatattgtagatacaagtcccttgtcaaacgtgatttgcaaatagcttttcccattctgtggggtgccttttcactttcttgttggtatcctttgaaatgcaaattatttcacataaattttgatgaagtaccattattttttcttttcttggtgtgcttt-------ctgtgtcagaaaccattgtctaattcaagttactggagaattacacctgtgttttcttctaagagttttatagctttagcttttacctttagttctttgatgtattttgagttaatttt-tt-atataatgtgtggtaggaatccaactttattcttatttatgaagatatacaatt i colAng1.NW_012115488v1 C 0 C 0 s canFam3.chr3 14331234 438 + 91889043 ttcttagagaaatatctattcagatcctttgcctattttt-acttggctcatta-tctttctattatttggtttttattattg-----agt----------------------------tataaagtttttttttaatatatcttaggaacaagttccttaccaaacaagatctataaatatcttttcttgttctgtgggttatcttttcactttcttgatgggatcttttgaaagacaaaagatttt-----aagtttgatgaagtacc-ttatttttcttctgttgcttgtacttttgatgtcctatgtaagaaacc--taagaaatctaaggtcatgatgatctatacctgggctttcttcaaagagttttatagttctagctcttacctttaggtatgtgatccattttgaattaattttgtt-atataatgtgaggtagaggtacaattttatccttttgtctataggtatctggtt i canFam3.chr3 I 125 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I e aotNan1.NW_018506370v1 1435789 314 - 15889662 I e cebCap1.NW_016107830v1 362443 321 - 1393929 I e saiBol1.JH378106 44999539 320 + 71252344 I e calJac3.chr2 112551822 320 + 204313951 I a score=1407883.000000 s hg38.chr5_GL383530v1_alt 65841 137 + 101241 ttcccagttgtcccaac--catatgttgaa-agacta-ttttttccccattttattttcttggcacctttgtcaaaaattaattgaccataagtgttaggctttactcatggactctcagttctattccatttatctgtat s panTro5.chr5 20298640 138 + 181907262 ttcccagttttcccaac--catatgttgaa-agactatttttttccccattttattttcttggcacctttgtcaaaaattaattgaccataagtgttaggctttacttatggactctcagttctattccatttatctgtat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20310964 138 + 183735486 ttcccagttttcccaac--catatgttgaa-agactatttttttccccattttattttcttggcacctttgtcaaaaattaattgaccataagtgttaggctttacttatggactctcagttctattccatttatctgtat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4797719 137 - 13748885 ttcccagttgtcccaac--catatgctgaa-agacta-ttttttccccattttattttcttggcacctttgtcaaaaattaattgaccataagtgttaggctttacttatggactctcagttctattccatttatctgcat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53829447 137 - 163208435 ttcccagttgtcccaac--catatgttgaa-agacta-ttttttccccattttattttcttggcacctttgtcaaaaattaattgaccataagtgttagggtttacttacggactctcagttctattccatttatctgtat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87852554 137 - 180051392 ttcccagttgtcccaac--catatattgaa-agacta-ttttttccccatttcattttcttggcacctttgtcaaaaataaattgaccataagtgttagggtttacttatggactctcagttctattccatttgtctgtat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87956980 137 - 181584905 ttcccagttgtcccaac--catatattgaa-agacta-ttttttccccatttcattttcttggcacctttgtcaaaaataaattgaccataagtgttagggtttacttatggactctcagttctattccatttgtctgtat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1184490 137 - 8785636 ttcccagttgtcccaac--catatattgaa-agacta-ttttttccccatttcattttcttggcacctttgtcaaaaataaattgaccataagtgttagggtttacttatggactctcagttctattccatttgtctgtat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1648114 137 + 27333823 ttcccagttgtcccaac--catatattgaa-agatta-ttttttccccatttcattttcttggcacctttgtcaaaaataagttgaccataagtgttagggtttacttatggactctcagttctattccatttatctgtat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1918095 137 - 91010382 ttcccagttgtcccaac--catatgttgaa-agacta-ttttttccccattttattttcttggcacctttgtcaaaaataaattgaccataagtgttagggtttacttatggattctcagttctattccatttatctgtat i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2037496 137 + 5179401 ttcccagttgtcccaac--catatattgaa-agacta-ctttttccccatttcattttcttggcacctttgtcaaaaataaattgaccataagtgttaaggtttacttatggactctcagttctattccatttatctgtat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7740046 138 - 21726897 ttcccaggtgtcccaac--catatgttgaa-agactatttttttccccattttattttcttggcacctttatcaaaaataaattgaccataagtgttagggtttacttatggactctcagttctattccatttatctgttt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112552142 137 + 204313951 TTCccagttgtcccagc--catatgttgaa-agacta-ttttatccccattttattttcttgacacccttgtcaaaaattaattgaccataagtgttagggcccacttttgaactctcagttctattccatttatctatat i calJac3.chr2 I 320 C 0 s saiBol1.JH378106 44999859 137 + 71252344 ttcccagttgtcccagc--catatgttgaa-atacta-ttttatccccattttattttcttgacacccttgtcaaaaattaattgaccattagtgttagggcccacttttggactctcagttctattccatttatctgtat i saiBol1.JH378106 I 320 C 0 s cebCap1.NW_016107830v1 362764 137 - 1393929 TTCccagttgtcccagc--catatgttgaa-agacta-ttttatccccattttattttcttgatacccttgtcaaaaattaattgaccataagtattagggcccacttttggactctcagttctattccatttatctatat i cebCap1.NW_016107830v1 I 321 C 0 s aotNan1.NW_018506370v1 1436103 137 - 15889662 TTCccagttgtcccagc--catatgttgaa-agacta-ttttgtccccattttattttcttgacacccttgtcaaaaattaattgaccataagtgttagggcccacttttggactctcagttctattctatttatctatat i aotNan1.NW_018506370v1 I 314 C 0 s canFam3.chr3 14331672 100 + 91889043 ---------gctcctgcatcttttgttaagcagacta-tttttccctc---------------------tgttgaaaat----------taaatgtgagggtttatctctagactctcaggtctgttgcattTCATCATAT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I a score=5311772.000000 s hg38.chr5_GL383530v1_alt 65978 555 + 101241 ttctgttc--------tcatgacaatactacattatcttgtttacttagcattgtagcaagtttttattaataaattatgaagtgtgagtacttcaattttgttctttctcaaaattg-ttttggctattctggttcctttgaatttccatatgaattttaggaatagcttgtgcatttttacaaagaagctaactgggattctgatagagtgttaaatctggggagcattgccatcttaatgatattaaatcctctgatccatgaatatgggatgtctttctat-------------------------ttatcttcataatttctttcaaaatgttatatagttttcagagtataaattttgcttattt-ttaaaaatttatttacgagtattttattgtttttcaagctattgtaaatg-------aattatttttttcgtttgttttaaatttccttattggttacaaatagaaattaatttatatattaatcttgtcctgcaatcttgtagaacttgtttattagttttagtagttttgtagtggattccttagggttttctatattcaagaccatgtcatttgcaagtaga s panTro5.chr5 20298778 554 + 181907262 ttctgttc--------tcatgacaatactacattatcttgtttacttagcattgtagcaagtttttattaataaattatgaagtgtgagtacttcaattttgttctttctcaaaattg-ttttggcttttctggttcctttgaatttccatatgaattttaggaatagcttgtgcatttttacaaagcagctaactgggattctaatagagtgttaaatctggggagcattgccatcttaatgatattaaatcctctgatccatgaatatgggatgtctttctat-------------------------ttatcttcataatttctttcaaaatgttatatagttttcagagtataaattttgcttattt-ttaaaaatttatttatgagtattttattgtttttcaagctattgtaaatg-------aatt-tttttttcatttgttttaaatttccttattggttagaaatagaaatcaatttatatattaatcttgtcctgcaatcttgtagaacttgtttattagttttagtagttttgtagtggattccttaggattttctatattcaagactatgtcattagcaaataga i panTro5.chr5 C 0 C 0 s panPan2.chr5 20311102 553 + 183735486 ttctgttc--------tcatgacaatactacattatcttgtttacttagcattgtagcaagtttttattaataaattatgaagtgtgagtacttcaattttgttctttctcaaaattg-ttttggcttttctggttcctttgaatttccatatgaattttaggaatagcttgtgcatttttacaaagcagctaactgggattctaatagagtgttaaatctggggagcattgccatcttaatgatattaaatcctctgatccatgaatatgggatgtctttctat-------------------------ttatcttcataatttctttcaaaatgttatatagttttcagactataaattttgcttattt-ttaaaaatttatttatgagtattttattgtttttcaagctattgtaaatg-------aat--tttttttcatttgttttaaatttccttattgattagaaatagaaatcaatttatatattaatcttgtcctgcaatcttgtagaacttgtttattagttttagtagttttgtagtggattccttaggattttctatattcaagactatgtcattagcaaataga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4797856 561 - 13748885 ttctgttctcatgacatcatgacaatactacattatcttgtttacttagcattgtagcaagtttttattaataaattatgaagtgtgagtacttcaattttgttctttctcaaaattg-ttttggcttttctggttcctttgaatttccatatgaattttaggaatagcttgtgcatttttacaaagcagctaactgggattctgatagagtgttaaatctggggagcattgccatcttaatgatattaaatcctctgatccatgaatatgggatgtctttctat-------------------------ttatcttcataatttctttcaaaatgttatatagttttcagagtataaattttgcttattt-ttaaaaatttatttacgagtattttattgtttttcaagctattgtaaatg-------aat--tttttttcatttgttttaaatttccttattggttagaaatagaaattaatttatatattaatcttgtcctgcaatcttgtagaacttgtttattagttttagtagttttgtagtggattccttaggattttctatattcaagactatgtcattagcaaataga i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53829584 552 - 163208435 ttctattc--------tcgtgacaatactaccgtatcttgtttacttagcattgtagcaagtttttattaataaattatgaagtgtgagtacttcaattttgttctttctcaaaattg-ttttggctattctggttcctttgaatttccatatgaattttaggaatagcttgtccatttttacaaggaagctaactgggattctgatagagtgttaaatctggggagcattgccatcttaatgatattaaatcctctgatccacgaatatgggatgtctttctat-------------------------ttatcttcataatttctttcaaaatgttatatagttttcagagtataaattttgcttattt-ttaaaaatttatttacaagcattttattgtttttcaagctattgtaaatg-------aa---tttttttcatttgttttaaatttccttattggttacaaatagaaattaatttatatattaatcttgtcctgtgatcttgtagaacttgtttattagttttagtagttttgtagtggattccttaggattttctgtattcaagaccatgtcattagcaaataga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87852691 573 - 180051392 ttctattc--------tcatgacaatactacattatcttgtttacttagcattgtagcaagtttttattaataaattatgaagtgtgagtacttcaacattgttctttctcaaaattgtttttggctattctggttcctttgaatttccatgtgaattttaggaatagcttgtccatttttacaaagaagctaattgggattctgat--agtgttaaatctggggagcattgccatcttaatgatactaaatcttctgatccatgaatatgggatgtctttctatttatttctatctatttctattatttctatcttaataatttctttcaaaatgttatatggttttcagagtgtaaattttgcttattt-ttaaaa----atttacgagcaatttattgtttttcaagctattgtaaatg-------gtt--tttttttcattggttttaaatttccttattggttctaaatagaaattaatttatatattaatcttgtcctgcagtcttgtagaacttgtttattagttttagtagttttgtagtggattccttaggattttctatattcaagaccatgtcattagcaaataga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87957117 573 - 181584905 ttctattc--------tcatgacaatactacattatcttgtttacttagcattgtagcaagtttttattaataaattatgaagtgtgagtacttcaacattgttctttctcaaaattgtttttggctattctggttcctttgaatttccatgtgaattttaggaatagcttgtccatttttacaaagaagctaactgggattctgat--agtgttaaatctggggagcattgccatcttaatgatactaaatcttctgatccatgaatatgggatgtctttctatttatttctatctatttctattatttctatcttaataatttctttcaaaatgttatatggttttcagagtgtaaattttgcttattt-ttaaaa----atttacgagcaatttattgtttttcaagctattgtaaatg-------ttt--tttttttcatttgttttaaatttccttattggttctaaatagaaattaatttatatattaatcttgtcctgcagtcttgtagaacttgtttattagttttagtagttttgtagtggattccttaggattttctatattcaagaccatgtcattagcaaataga i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1184627 573 - 8785636 ttctattc--------tcatgacaatactacattatcttgtttacttagcattgtagcaagtttttattaataaattatgaagtgtgagtacttcaacattgttctttctcaaaattgtttttggctattctggttcctttgaatttccatgtgaattttaggaatagcttgtccatttttacaaagaagctaactgggattctgat--agtgttaaatctggggagcattgccatcttaatgatactaaatcttctgatccatgaatatgggatgtctttctatttatttctatctatttctattatttctatcttaataatttctttcaaaatgttatatggttttcagagtgtaaattttgcttattt-ttaaaa----atttatgagcaatttattgtttttcaagctattgtaaatg-------gtt--cttttttcatttgttttaaatttccttattggttctaaatagaaattaatttatatattaatcttgtcctgcagtcttgtagaacttgtttattagttttagtagttttgtagtggattccttaggattttctatattcaagaccatgtcattagcaaataga i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1648251 575 + 27333823 ttctattc--------tcatgacaatactacattatcttgtttacttagcattgtagcaagtttttattaataaattatgaagtgtgagtacttcaacattgttctttctcaaaattgtttttggctattctggttcctttgaatttccatgtgaattttaggaatagcttgtccattttcacaaagaagctaactgggattctgat--agtgttaaatctggggagcattgccatcttaatgatactaaatcttctgatccatgaatatgggatgtctttctatttatttctatctatttctattatttctatcttaataatttctttcaaaatgttatatggttttcagagtgtaaattttgcttattt-ttaaaa----atttacgagcaatttattgtttttcaagctattgtaaatgt-----tttt--tttttttcatttgttttaaatttccttattggttctaaatagaaattaatttatatattaatcttgtcctgcagtcttgtagaacttgtttattagttttagtagttttgtagtggattccttaggattttctatattcaagaccatgtcattagcaaataga i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1918232 565 - 91010382 ttctattc--------tcatgacaatactacattatcttgtttacttagcattgtagcaagtttttattaataaattatgaagtgtgagtacttcaacattgttctttctcaaaattgtttttggctgttctggttcctttgaatttccatgtaaattttaggaatagcttgtccatttttacaaagaagctaactgggattctgat--agtgttaaatctggggagcattgccatcttaatgatactaaatcttctgatctatgaatatgggatgtctttctat-------------------ttatttacatattaataatttctttcaaaatgtcatatggttttcagagtgtaaattttgcttattt-ttaaaaatttatttacgagcaatttattgtttttcaagctattgtaaatgaattgttttt--tttttttcatttgttttaaatttccttattggttctaaatagaaattaatttatatattaatcttgtcctgcagtcttgtacaacttgtttattagttttagtagttttgtagtggattccttaggattttctatattcaagaccatgtcattagcaaataga i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2037633 575 + 5179401 ttctattc--------tcatgacaatactacattatcttgtttacttagcattgtagtaagtttttattaataaattatgaagtgtgagtacttcaacattgttctttctcaaaattgtttttggctattctggttcctttgaatttccatgtgaattttaggaatagcttgtccatttttacaaagaagctacctgggattctgat--agtgttaaatctggggagcattgccatcttaatgatactaaatcttctgatccatgaatatgggatgtctttctatttatttctatctatttctattatttctatcttaataatttatttcaaaatgttatatggttttcagagtgtaaattttgcttattt-ttaaaa----atttacgagcaatttattgtttttcaagctattgtaaatgg-----tttt--tttttttcatttgttttaaatttccttattggttctaaatagaaattaatttatatattaatcttgtcctgcagtcttgtagaacttgtttattagttttagtagttttgtagtggattccttaggattttctatattcaagaccatgtcattagcaaataga i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7740184 562 - 21726897 ttctattc--------tcatgacaatactacattatcttgtttactttgcattgtagcaagttttgattaataaattatgaagtgtgagtacttcaacattgttctttctcaaaattgtttttggctattctggttcctttgaatttccatgtgaattttaggaatagcttgtccatttttacaaagaagctaactgggattctgat--agtgttaaatctggggagcactgtcatcttaatgatactaaatcttctgatccatgaatatgggatgtttttctat-------------------ttatttacatcttaataatttctttcaaaatgttatatggttttcagagtgtaaattttgcttattt-ttaaaaatttatttacgagcaatttattgtttttcaagctattgtaaatg---aattgtt--ttttttttatttgttttaaatttccttattcgttctaaatagaaattaatttatatattaatcttgtcctgcagtcttgtagaacttgtttattagttttagtagttttgtagtggattccttaggattttctatattcaagaccatgtcattagcaaataga i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112552279 555 + 204313951 ttcta-tc--------tcatgacaataccgcattatcttgtttacttagcattgtagcaagtttttattaataaattatgaagtgtgaatacttcaaatttgttctttctcaaaattg-ctttaactatt----ttccttttaatttccatatgaattttaggaatagcttgtcaatttttacgaagaagctaactgagattctgatagagtgttaaatctggtgagcattgccatgttaatgatattaaatcttctgatccatgaatatgggatgtctttccat-------------------ttatttatatctttgtaatttctttcaaaatattgtatagttttcagagtataaattttgctaattt-taaaaaatttattcacaactattttattgtttttcaggctattgtaaatgattt--------tttttttcatttcttttaaatttccttattggttctaaatagaaattaatttatatattaatcttgtcctgcaatcttgcagaacctgtttattacttttagtagttttgtagtggattccttaggattttctatatgtaagaccatgtcattagcaaataga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 44999996 553 + 71252344 ttctattc--------tcatgacaataccacattatcttgcttacttagcattgtagcaagtttttattaataaatcatgaagtgtgagtacttcgaatttgttctctctcaaaattg-ttttagctatt----ttcctttgaatttccatatggatttcaggaatagcttgtcaatttttatgaagaagctaactgagattctgatagagtgttaaatctggggagcattgccataataatgatattaaatcttctgatccatgaatatgggatgtctttccat-------------------tt-tttatatctttgtaatttctttcaaaatattgtatagttttcagagtataaattttgcttattt-taaaaaatttattcacaa--attttattgtttttcaggctattgtaaatgaattgt-ggg--tttttttcatttcttttaaatttccttattggttctaaatagaaattaatttatatattaatctcatcctgcaatcttgcagaacttgtttattagttttagtagttttgtagtggattccttaggattttctatatgcaagaccatgtcattagcaa----- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 362901 556 - 1393929 ttctattc--------tcatgacaataccacgttatcttgtttacttagcattgtagcaagtttttattaata----atgaagtgtgagtacttcaaatttgttcttactcaacattg-ttttagctatt----ttcctttgaatatccatatgaattttaggaatagcttgtcaa-ttttacaaagaagctaactgagattctgatagagcgttaaatctgggaagcattgccatattaatgatattaaatcttctgatccatgaatatgggatgtctttccat-------------------ttatttatatctttgtaatttctttcaaaatattgtatagtttttagagtataaattttgcttatttaaaaaaaatttattcacaagtattttattgtttttcaggctattgtaaatggatg-t-gtt--tttttttcatttctttaaaatttccttattggttctaaatagaaattaatttatatattaatcttgtcctgcaatcttgcagaacttgtttattagttttagtagttttgtagtggattccttaggattttctatatgcaagaccatgtcattagcaaataga i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1436240 562 - 15889662 ttctattc--------tcatgacaatagcacattttcttgtttacttagcattgtagcaagtttttattaataaattatgaagtgtgagtacttcaaatttgttctttctcaaaattg-ttttagctatt----ttcctttgaatttccatatgaattttaggaatagcttgtaaatttttatgaagaagctaactgagattctgatagagtgttaaatctggggagcattgccatattaatgatattaaatcttctgatccatgaatatgggatgtcttttcat-------------------ttatttatatctttgtaatttctttcaaaatattgtatagttttcagggtataaattttgcttattt-taaaaaatttattcacaagtattttattgtttttcaggctattgtaaatgaattgtagtt--tttttttcatttcttttaaatttccttattggttctaaatagaaattaatttatatattaatcttgtcctgcaatcttgcagaacttgtttattagttttagtagttttgtagtggattccttaggattttctatatacaagactatgtcattagtaaataga i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14331772 0 + 91889043 C e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 1322492 750 - 29863360 I a score=2837405.000000 s hg38.chr5_GL383530v1_alt 66533 267 + 101241 gataactttatttcttcctttccaatctggatga-ctttcatattattctcttggtaa-ttgtcctggcaagaatctctagtgcagt----gttgaatagatgtgaagagagcaaacatccttgcttgttcctgatcttagggtcagggggaagtattca-tccttcaccattaagtatgatgctgggtagctatgagtttt-tttggatgccctttaccatgttgaggatgctcccttttaatcttaatttgttggatgcttCTTtgcttcctc s panTro5.chr5 20299332 267 + 181907262 gataactttatttcttcctttccaatctggatga-cttttttattattctcttggtaa-ttgtcctggcaagaatctctagtgcagt----gttgaatagatgtgaagagagcaaacatccttgcttgttcctgatcttagggtcagggggaagtattca-tccttcaccattaagtatgatgctgggtagctatgagtttt-tatggatgccctttaccatgatgaggatgctcccttttaatcttaatttgttggatgcttCTTtgcttcctc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20311655 267 + 183735486 gataactttatttcttcctttccaatctggatga-cttttttattattctcttggtaa-ttgtcctggcaagaatctctagtgcagt----gttgaatagatgtgaagagagcaaacatccttgcttgttcctgatcttagggtcagggggaagtattca-tccttcaccattaagtatgatgctgggtagctatgagtttt-tatggatgccctttaccatgatgaggatgctcccttttaatcttaatttgttggatgcttCTTtgcttcctc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4798417 267 - 13748885 gataactttatttcttcctttccaatctggatga-cttttttattattctcttggtaa-ttgtcctggcaagaatctctagtgcagt----gttgaatagatgtgaagagagcaaacatccttgcttgttcctgatcttagggtcagggggaagtattca-tccttcaccattaagtatgatgctgggtagctatgagtttt-tatggatgccctttaccatgatgaggatgctcccttttaatcttaatttgttggatgcttCTTtgcttcctt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53830136 267 - 163208435 gataactttatttcttcctttccaatctggatga-cttttatattattctcttggtaa-ttgtcctggcaagaatctctactgcagt----gttgaatagatgtgaagaaagcaaacatccttgcttgttcctgatcctagggtcagggggaagtattca-tccttcaccattaagtatgatactgggtagctatgagtttt-tatggatgccctttaccatgatgaggatgctccctattaatcttaatttgttggatgcttCTTtgcttcctc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87853264 267 - 180051392 gataactttatttcttcctttccaatctagatga-cttttatattattctcttggtaa-ttgtcctggcaagaatctctggtgcagt----gttgaatagatgtgaagagagcaaacatccttgtttgttcctgatcttagggtcagggggaagtattca-tccttcaccattaagtatgatgctgggtagatatgagtttt-tatgaatgccctttaccgtgaggaggatgatcccttttaatcttaatttgttgggtgcgtctttgcttcctc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87957690 267 - 181584905 gataactttatttcttcctttccaatctagatga-cttttatattattctcttggtaa-ttgtcctggcaagaatctctggtgcagt----gttgaatagatgtgaagagagcaaacatccttgtttgttcctgatcttagggtcagggggaagtattca-tccttcaccattaagtatgatgctgggtagatatgagtttt-tatgaatgccctttaccgtgaggaggatgatcccttttaatcttaatttgttgggtgtGTCTTtgcttcctc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1185200 267 - 8785636 gataactttatttcttcctttccaatctagatga-cttttatattattctcttggtaa-ttgtcctggcaagaatctctggtgcagt----gttgaatagatgtgaagagagcaaacatccttgtttgttcctgatcttagggtcagggggaagtattca-tccttcaccattaagtatgatgctaggtagatatgagtttt-tatgaatgccctttaccgtgaggaggatgatcccttttaatcttaatttgttgggtgcgtctttgcttcctc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1648826 267 + 27333823 gataactttatttcttcctttccaatctagatga-ctttcatattattctcttggtaa-ttgtcctggcaagaatctctagtgcagt----gttgaatagatgtgaagagagcaaacatccttgtttgttcctgatcttagggtcagggggaagtattca-tccttcaccattaagtatgatgctgggtagatatgagtttt-tatgaatgccctttaccgtgaggaggatgatcccttttaatcttaatttgttggatgCGTCTTtgcttcctc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1918797 266 - 91010382 gataactttatttcttcctttccaatctagatga-cttttatattattgtctcggtaa-ttgtcctggcaagaatctctagtgcagt----gttgaatagatgtgaagagagcaaacatccttgtttgttcctgatcttagggtcagggggaagtattca-tgcttcactattaagtatgatgctgggtagctatgagtttt-tatgaatgccctttaccatgatgaggatgatcccttttaatgttaattt-ttggatgtgtctttgcttcctc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2038208 267 + 5179401 gataactttatttcttcctttccaatctagatga-cttttatattattcttttggtaa-ttgtcctggcaagaatctctagtgcagt----gttgaatagatgtgaagagagcaaacatccttgtttgttcctgatcttagggtcagggggaagtattca-tccttcaccattaagtatgatgctgggtagatatgagtttt-tatgaatgccctttaccgtgaggaggatgatcccttttaatcttaatttgttggatgcgtctttgcttcctc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7740746 257 - 21726897 gataactttatttcttcctttccaatctagatga-cttttatattattctcttggtaa-ttgtcctggcaagaatctctagtgcagt----gttgaatagatgtgaagagagcaaacatccttgtttgttcctgatcttacggtcagggggaagtattca-tccttcaccattaagtatgatgc----------tgagtttt-tatgaatgccctttaccatgaagaggatgatcccttttaatcttaatttgttggatgcgtctttgcttcctc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112552834 269 + 204313951 gataactgtatttcttcctttccaatctggatgattttttatattatcctcttggtaatttgtcctggcaagaatcttcagtgcagt----gttgaacagcagtgaagagagcaaacatccttgcttgttccttaccttagggtcagggggaagtattca-tccttcacccttaagtatgatgcccggtagctatgagtttt-tatggatgccctttaccatgatgaggatgctcccttttaatcctaatttgtcgagtgcttCTTtgcttcctt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45000549 267 + 71252344 -ataactttatttcttcctttccaatctggatgattttttatattatcctcttggtaa-ttgtcctggcaagaatctccagttcagt----gttgaacagatgtgaagagagcaaacatccttgcttattccttatcttagggtcagggggaagtattca-tccttcaccattaagtatgatgcccggtagctatgagtttt-tatggatgccctttaccatgatgaggatgctcccttttaatcctaatttgttgagtgcttCTTtgcttcctt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 363457 253 - 1393929 gataactttatttcttcctttccaatctggatgattttttatattatcctcttggtaa----------------tctccagtgcggt----gttgaacagatgtgaagaaagcaaacatccttgcttgttccttatcttagggtcaggggcaagtattca-tcctttaccattaagtgtgatgcccggtagctatgagtttt-tatggatgccctttaccatgatgaggatgctcccttttactcctaatttgttgagtgcttCTTtgcttcctt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1436802 268 - 15889662 ggtaactttatttcttcctttccaatctggatgattttttatattatcctcttggtaa-ttgtcctggcaagaatctccagtgcagt----gttgaacagatgtgaagagagcaaacatccttgcttgttccttatcttagggtcagggggaagtattca-tccttcaccattaagtatgatgcccagtagctgtgagtttt-tatggatgccctttaccatgatgaggatgctcccttttaatcctaatttgttgagtgcttCTTtgcttcctt i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 28540236 249 + 29863360 gataatttcacttctttctttctgatttgaatgt-ctt-----ttattttcttgctaa-tcttcctggcaagaatcaccagtgcaatattaattaaaaagaagtgaagagagcagacatcctttctggt------------gg--aggaggggagattcagtaattgcccactaagtatgatgt----tagccctgggttttctatggatgccctttatcatggtgagg-tattcctttttaattctaatttgctgagtgtttCTTtgctttctg i otoGar3.GL873536 T 19760 C 0 e canFam3.chr3 14331772 0 + 91889043 C e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I a score=3377830.000000 s hg38.chr5_GL383530v1_alt 66800 289 + 101241 tgcctagaatgccctttgtcctttcttctacctggtggattccctcttattctctaagaccagcttaaatgtctccacttAATAAAGCTGATCCTCTCCTCTTTTCCACTACTGACTTGTAGGGTTATAAGTTGTATAGGAATGGAATAAATTGACTT-TGAGTCGCTTTTTAAAAGGCTTTCTCAATTTGGAAAATGTCCAATTTTGAAATTAAGATACTAAGATTATAGAGCCCCCCACAGATTATTCCATTCAACTTGTTC----TAGTATTGATTTTCAAGCACAAAAAC s panTro5.chr5 20299599 288 + 181907262 tgcctagaatgccctttgtcctttcttctacctggtggattccctcttattctctaagaccagcttaaatgtctccacttAATAAAGCTGATCCTCTCCTCTTTTCCACTACTGACTTGTAGGGTTATAAGTTGTACAGGAATGGAATAAATTGACTT-TGAGTCGCTTTTTAAAAGCCTTTCTCAATTTGGAAAATGTCCAATTTTGAAATTAAGATACTAAGATTATAGAG-CCCCCACAGATTATTCCATTCAACTTGTTC----TAGTATTGATTTTCAAGCACAAAAAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20311922 288 + 183735486 tgcctagaatgccctttgtcctttcttctacctggtggattccctcttattctctaagaccagcttaaatgtctccacttAATAAAGCTGATCCTCTCCTCTTTTCCACTACTGACTTGTAGGGTTATAAGTTGTATAGGAATGGAATAAATTGACTT-TGAGTTGCTTTTTAAAAGCCTTTCTCAATTTGGAAAATGTCCAATTTTGAAATTAAGATACTAAGATTATAGAG-CCCCCACAGATTATTCTATTCAACTTGTTC----TAGTATTGATTTTCAAGCACAAAAAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4798684 288 - 13748885 tgcctagaatgccctttgtcctttcttctacctggtggattccctcttattctctaagaccagcttaaatgtctccacttAATAAAGCTGATCCTCTCCTCTTTTCCCCTACTGACTTGTAGGGTTATAAGTTGTATAGGAATGGAATAAATTGACTT-TGAGTCGCTTTTTAAAAGCCTTTCTCAATTTGGAAAATGTCCAATTTTGAAATTAAGATACTAAGATTATACAG-CCCCCACAGATTATTCCATTCAACTTGTTC----TAGTATTGATTTTCAAGCACAAAAAC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53830403 288 - 163208435 tgcctagaatgccctgtgtcctttcttctacctggtggattccctcttattctctaagaccagcttaaatgtctccactcaataaagcTGATCCTCTCCTCTTTTCCACTACTGACTTGTAGGGTTATAAGTTGTATAGGAATGGAATAAATTGACTT-TGAGTCACTTTTTAAAAGCCTTTCTCAATTTGGAAAATGTCCAATTTTGAAATTAAGATACTAAGATTATAGAG-CCCCCACAGATTATTCCATTCAACTTGTTC----TAGTATTAATTTTCAAGCACAAAAAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87853531 286 - 180051392 tgcctagaatgccctttgtcctttcttctacctggtagattccctcttattccctaagaccagcttaaatgtctccacttaataaagcTGATCCTCTCCTCTTTTCCGCTACTGACTTGTAGGGTTAAAAGTTGTACAGGAATGAAATAAATTGACTT-TCAGTCACTTTTTAAAGG--TTTCTCAATTTGGAAAATGTCCAGTTTTGAAATTAAGACACTAAGATTATAGAG-ACCCCACAGATTATTCCATTCAACTTGTTC----TAGTATTGATTTTCAAGCACAAAAAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87957957 287 - 181584905 tgcctagaatgccctttgtcctttcttctacctggtagattccctcttattccctaagaccagcttaaatgtctccacttAATAAAGCTGATCCTCTCCTCTTTTCCGCTACTGACTTGTAGGGTTAAAAGTTGTACAGGAATGAAATAAATTGACTT-TCAGTCACTTTTTAAAAG-CTTTCTCAATTTGGAAAATGTCCAGTTTTGAAATTAAGACACTAAGATTATAGAG-CCCCCACAGATTATTCCATTCAACTTGTTC----TAGTATTGATTTTCAAGCACAAAAAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1185467 287 - 8785636 tgcctagaatgccctttgtcctttcttctacctggtagattccctcttattccctaagaccagcttaaatgtctccacttaataaagcTGATCCTCTCCTCTTTTCCGCTACTGACTTGTAGGGTTAAAAGTTGTACAGGAATGAAATAAATTGACTT-TCAGTCACTTTTTAAAAG-CTTTCTCAATTTGGAAAATGTCCAGTTTTGAAATTAAGACACTAAGATTATAGAG-CCCCCACAGATTATTCCATTCAACTTGTTC----TAGTATTGATTTTCAAGCACAAAAAC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1649093 287 + 27333823 tgcctagaatgccctttgtcctttcttctacctggtagattccctcttattccctaagactagcttaaatgtctctacttaataaagcTGATCCTCTCCTCTTTTCCGCTACTGACTTGTAGGGTTAAAAGTTGTACAGGAATGAAATAAATTGACTT-TCAGTCACTTTTTAAAAG-CTTTCTCAATTTGGAAAATGTCCAGTTTTGAAATTAAGACACTAAGATTATAGAG-CCCCCACAGATTATTCCGTTCAACTTGTTC----TGGTATTGATTTTCAAGCACAAAAAC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1919063 287 - 91010382 tgcctagaatgccctttgtcctttcttctacctggtggattccctcttattccctaagaccagcttaaatgtctccacttAATAAAGCTGATCCTCTCCTCTTTTCTGCTACT-ACTTGTAGGGTTAAAAGTTGTACAGGAATGAAATAAATTGACTT-TGAGCCACTTTTTAAAAGCCTTTCTCAATTTGGAAAATGTCCAGTTTTGAAATTAAGACACTAAGGTTATAGAG-CCCTCACAGATTATTCCATTCAACTTGTTC----TAGTATTGATTTTCAAGCACAAAAAC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2038475 287 + 5179401 tgcctagaatgccctttgtcctttcttctacctggtagattccctcttattccctaagaccagcttaaatgtctccacttaataaagcTGATCCTCTCCTCTTTTCCGCTTCTGACTTGTAGGGTTAAAAGTTGTACAGGAATGAAATAAATTGACTT-TCAGTCACTTTTTAAAAG-CTTTCTCAATTTGGAAAATGTCCAGTTTTGAAATTAAGACACTAAGATTATAGAG-CCCCCACAGATTATTCCATTCAACTTGTTC----TAGTATTGATTTTCAAGCACAAAAAC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7741003 287 - 21726897 tacctagaatgccctttgtcctttcttctacctggtggattccctcttattccctaagaccagcttaaatgtctccacttaataaagcTGATCCTCTCCTCTTTTCTGCTA-TGACTTGTAGGGTTAAAAGTTGTACAGGAATGAAATAAATTGACTT-TGAGTCACTTTTTAAAAGCCTTTCTCAATTTGGAAAATGTCCAGTTTTGAAATTAAGACATTAAGATTATAGAG-CCCCCACAGATTTTTCCATTCAACTTGTTC----TAGTATTGATTTTCAAGCACAAAAAC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112553103 288 + 204313951 tgcctataatgccctttgtcctttcttctacctggtggcttccctcttattccctaagaccagtttaaatgtctccacttAATAGAGCTGATCCTCTCCTCTTTTCCACTACTGACTTGTAGGGTTATAAGTTATACAGGAATGGAATAGATTGACTC-TGAGTCACTTTTTAAAAGCCTTTCTCAATTTGAAAAATGTCCAATTTTGAAATCAAGACACTAAGATTATAGAG-TTCCCATAGATTATTTCATTCAACTTGTTC----TAGTATTGATTTTCAAGCACAAAAAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45000816 287 + 71252344 tgcctagaatgtcctttgtcctttcttctacttggtggcttccttcttattccctaagaccagcttaaatgtctccacttAACAGAGCTGATCCTCTCCTCTTTTCCACTGCTGACTTGTAGGGTTATAACTCACACAGGAATGGAATAGATTGACTC-TGAGTCAGTTTTTAAAAGCCTTTCGCAATTTGAAAAATGTCCAATTTTGAAATCAAGACACTAAGATTATAGAG-TCCCCATAGATTATTCCATTCAACTTGTTC----TTGTATTGATTTTCAAGCACAAAAA- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 363710 288 - 1393929 tgcctagaatgccctttgtcctttcttctacctggtggcttccctctaattccctaagaccagcttaaatgtttccacttAGTAGAGCTGATCCTCTCCTCTTTTCCACTACTGACTTGTAGGGTTATAAGTCATACAGGAACGGAATAGATTGACTC-TGAGTCAGTTTTTAAAAGGCTTTCTCAATTTGAAAAATGTCCAATTTTGAAATCAAGACACTAAGATTATAGAG-TCCCCATAGATTATTCCATTCAACTTGTTC----TAGTATTGATTTTCAAGCACAAAAAC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1437070 288 - 15889662 tgcctagaatgccctttgtcctttcttctacctggtggcttccctcttattccctaagaccagcttaaatgtctccacttAATAGAGCTGATCCTCTCCTCTTTTCCACTACTGACTTGTAGGGTTATAAATCATACAGGAATGGAATAGATTGACTC-TGAGTCACTTTTTAAAAGCCTTTCTCAATTTGAAAAATGTCCAATTTTGAAATCAAGACACTAAGATTATAGAG-TCCCCATGGATTATTCCATTCAACTTGTTC----TAGTATTGATTTTCAAGGACAAAAAC i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 28540485 283 + 29863360 tgcctggaatgatctt--tcttctctcctacctgatgaactccctcttagcccctgagac-agcttaaacatcTC-AGTGAACAAAGCTGATGTTCTTTTCTTACCTACTGCTGACCTATAGGG-TGTAAGTCATACAAGTATGGAAGAAATTGACTT-TGAATCACTTTTAAAGGG--CTTTTCAATTTG-AAAATGTTTGATCATGAATTCAAGACAATGAGATTACACAG-CCCCCACAGATTGTTCCATCCAACCTGTCCGTCTTGGTATTGATTTTTAAGTAT-AAAAC i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14331772 279 + 91889043 TGCTAAGAGTACTCTTTTTTCTCTCTTCTACGGACTGAATTTTCTCAAATTTTCTAAGACCAGCTTTAATGTCTCCATTCCATAAAGCTAATCTCCTTTTTTTT----CTTCTGGCCTATAGGGTTATAAGTCATAAAGAAATGGAACGAATTGACTTAAGAGTCCCTTTTTAAAAG-AGTCTTCAATTTGGAAAATGTCCAATTTTGAATTCAAGGCTTGAGGATCACAGAG-CCCTCACAGATAATTCCATTTAACCTGTCA----TG----TGATTTTCAGGTGC-AAAAC i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258403 0 - 11655695 C e mm10.chr13 76468460 10897 + 120421639 I a score=3521303.000000 s hg38.chr5_GL383530v1_alt 67089 281 + 101241 TCAGTGAATTTA-ACAAGCAGAAATGCATTTGCCAAGTACAAATGGA----TCCACATCTC-----TTTGCATAGTTAGTAATCTACACATTTAC-AAAAATCTAATAAAAATGTTTCTTGAAGATGACTAGATCTAAAATGATAA--A-TATTGAATATCCTGGCAATTAGGAAGAGAATGTGAGTTATCTGATCCAGTGAAATGAAATTTTGCATTAAGA-GGCATGTTAATTGAAAGCTGAAGATTAATGCTTTTTACTCACATATGTGTTAAGTTACAATTCACTTCTGCCG s panTro5.chr5 20299887 281 + 181907262 TCAGTGAATTTA-ACAAGCAGAAATGCATTTGCCAAGTACAAATGGA----TACACATCTC-----TTTGCATAGTTAGTAATCTACACATTTAC-AAAAATCTAATAAAAATGTTTCTTGAAGATGACTAGATCTAAAATGATAA--A-TATTGAATATCCTGGCAATTAGGAAGAGAATGTGAGTTATCTGATCCAGTGAAATGAAATTTTGCATTAAGA-GGCATGTTAATTGAAAGCTGAAGATTAATGCTTTTTACTCACATATGTGTTAAGTTACAGTTCACTTCTGCCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20312210 281 + 183735486 TCAGTGAATTTA-ACAAGCAGAAATGCATTTGCCAAGTACAAATGGA----TACACATCTC-----TTTGCATAGTTAGTAATCTACACATTTAC-AAAAATCTAATAAAAATGTTTCTTGAAGATGACTAGATCTAAAATGATAA--A-TATTGAATATCCTGGCAATTAGGAAGAGAATGTGAGTTATCTGATCCAGTGAAATGAAATTTTGCATTAAGA-GGCATGTTAATTGAAAGCTGAAGATTAATGCTTTTTACTCACATATGTGTTAAGTTACAGTTCACTTCTGCCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4798972 281 - 13748885 TCAGTGAATTTA-ACAAGCAGAAATGCATTTGCCAAGTACAAATGGA----TACACATCTC-----TTTGCACAGTTAGTAATCTACACATTTAC-AAAAATCTAATAAAAATATTTCTTGAAGATGACTAGATCTAAAATGATAA--A-TATTGAATATCCTGGCAATTAGGAAGAGAATGTGAGTTATCTGATCCAGTGAAATGAAATTTTGCATTAAGA-GGCATGTTAATTGAAAGCTGAAGATTAATGCTTTTTACTCACATATGTGTTAAGTTACAATTCACTTCTGCCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53830691 281 - 163208435 TCAGTGAATTTATACAAGCAGAAATGCATTTGCCAAGTACAAATTGA----TACACATCTC-----TTTGCATAGTTAGTAATCTACACATTTGC-AAAAATCTAATAAAAATGTTTC-TGAAGATGACTAGATCTAAAATGATAA--A-TATTGAATATCCTGGCAATAAGGAAGAGAATGTGAGTTATCTGATCCAGTGAAATGAAATTTTGCATTAAGA-GACATGTTAATTGGAAGCTGAAGATTAATGCTTTTTACTCACATATGTATTAAGTTACAATTCACTTCTGCCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87853817 282 - 180051392 TCAGTGAATTTATACAAGCAGAAATGCATTTGCCAAGTACAAATTGA----TACACATCTC-----TTTGCATAGTTAGTAATCTACACATTTGC-AAAAATCTAATAAAAATGTTTCCTGAAGATGACTAGATCTAAAATGATAA--A-TATTGAATATCCCGGCAATAAGGAAGAGAATGTGAGTTATCTGATCCAGTGAAATGAAATTTTGCATTAAGA-GGCATGTTAATTGAAAGCTGAAGATTAATGATTTTTGCTCACATACGTATTAAGTTACAATTCACTTCTGCCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87958244 282 - 181584905 TCAGTGAATTTATACAAGCAGAAATGCATTTGCCAAGTACAAATTGA----TACACATCTC-----TTTGCATAGTTAGTAATCTACACATTTGC-AAAAATCTAATAAAAATGTTTCCTGAAGATGACTAGATCTAAAATGATAA--A-TATTGAATATCCCGGCAATAAGGAAGAGAATGTGAGTTATCTGATCCAGTGAAATGAAATTTTGCATTAAGA-GGCATGTTAATTGAAAGCTGAAGATTAATGATTTTTGCTCACATACGTATTAAGTTACAATTCACTTCTGCCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1185754 282 - 8785636 TCAGTGAATTTATACAAGCAGAAATGCATTTGCCAAGTACAAATTGA----TACACATCTC-----TTTGCATAGTTAGTAATCTACACATTTGC-AAAAATCTAATAAAAATGTTTCCTGAAGATGACTAGATCTAAAATGATAA--A-TATTGAATATCCCGGCAATAAGGAAGAGAATGTGAGTTATCTGATCCAGTGAAATGAAATTTTGCATTAAGA-GGCATGTTAATTGAAAGCTGAAGATTAATGATTTTTGCTCACATACGTATTAAGTTACAATTCACTTCTGCCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1649380 282 + 27333823 TCAGTGAATTTATACAAGCAGAAATGCATTTGCCAAGTACAAATTGA----TACACATCTC-----TTTGCATAGTTAGTAATCTACACATTTGC-AAAAATCTAATAAAAATGTTTCCTGAAGATGACTAGATCTAAAATGATAA--A-TATTGAATATCCCGGCAATAAGGAAGAGAATGTGAGTTATCTGATCCAGTGAAATGAAATTTTGCATTAAGA-GGCATGTTAATTGAAAGCTGAAGATTAATGATTTTTGCTCACATACGTATTAAGTTACAATTCACTTCTGCCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1919350 282 - 91010382 TCAGTGGATTTATACAAGCAGAAATGCCTTTGCCAAGTACAAATTGA----TACACATCTC-----TTTGCACAGTTAGTAATCTACACATTTGC-AAAAATCTAATAAAAATGTTTCCTGAAGATGACTAGATCTAAAATGATAA--A-TATTGAATATCCTGGCAATAAGGAAAAGAATGTGAGTTATCTGATCCAGTGAAATGAAATTTTGCATTAAGA-GGCGTGTTAATTGAAAGCTGAAGATTAATGATTTTTGCTCACATACGTATTAAGTTACAATTCACTTCTGCGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2038762 282 + 5179401 TCAGTGAATTTATACAAGCAGAAATGCATTTGCTAAGTACAAATTGA----TACACATCTC-----TTTGCATAGTTAGTAATCTACACATTTGC-AAAAATCTAATAAAAATGTTTCCTGAAGATGACTAGATCTAAAATGATAA--A-TATTGAATATCCCGGCAATAAGGAAGAGAATGCGAGTTATCTGATCCAGTGAAATGAAATTTTGCATTAAGA-GGCATGTTAATTGAAAGCTGAAGATTAATGATTTTTGCTCACATACGTATTAAGTTACAATTCGCTTCTGCCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7741290 282 - 21726897 TCAGTGAATTTATACAAGCAGAAATGCATTTGCCAAGTACAAATTGA----TACACATCTC-----TTTGCACAGTTAGTAATCTACACATTTGC-AAAAATCTAATAGAAATGTTTCCTGAAGATGACTAGATCTAAAATGATAA--A-TATTGAATATCCTGGCAATAAGGAAGAGAATGTGAGTTATCTGATCCAGTGAAATGAAATTTTGCATTAAGA-GGCATGTTAATTAAAAGCTGAAGATTAATGATTTTTTCTCACATACATATTAAGTTACAATTCACTTCTGCCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112553391 273 + 204313951 TCAGTGAAATGACACAAGCAGAAGTGTGTTTGCCAAGTACAAATTGA----TACACATCTC-------TGAATAGCCAGTAATCTAAACATCTGCAAAAAATCTAATAAAAATGTTTCCAGAAGATGACTAGATCTAAAATGATAA--A-TATTGAATAACCTGGCAATAAGGAAGAGAATGTGAGTTATCTGATCCACTGAAATG-AATTTTACATTAAGA-GGCATGTTAATTGAAAGCTGAAGATTAATGATTTTTACTCACA-------TAAGTTACAATTCACTTCTGTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45001103 271 + 71252344 -CAGTGAACTGACACAAGCAGAAGTGCATTTGCCAAGTACAAATTGA----TACACATCTC-------TGAATAGTTAGTTATCTACACATCTGC-AAAAATCTAATAAAAATGTTTCCAGAAGATGACTAGACATAAAATGATAA--A-TATTGAGTAACCTGGCAATAAGGAAGAGAATGTGAGTTATCTGATCCAGTGAAATG-AATTTTACATTAAGA-GGCATGTTAACTGAAAGCTGAAGATTAATGATTTTTACTCACG-------TAAGTTACAATTCACTTCTGCTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 363998 271 - 1393929 TCAATGAACTGACAC-AGCAGAAGTGCATTTGCCAAGTACATATTGA----TACACATCTC-------TGAATAGTTAGTAATCTACACATCTGC-ACAAATCTAATAAAAATGTTTCCAGAAGATGACTAGATCTAAAACGATAA--A-TATTGAATAACCTGGCAATAAGGAAGAGAATGTGAGTTATCTGATCTAGTGAAATG-AATTTTACATTAAGA-GGCATGTTAATTGAAAGCTGAAGATTAATGATTTTTACTCGCA-------TAAGTTACAGTTCACTTCTGCTA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1437358 272 - 15889662 TCAGTGAACTGATACAAGCAGAAGTGCATTTGCCAAGTACAAATTGA----TATACATCTC-------TGAATAGTTAGTAATCTACACATCTGC-AAAAATCTAATAAAAATGTTTCCAGAAGATGACTAGATCTAAAATGATAA--A-TATTGAATAACCTGGCAATAAGGAAGAGAATGTGAGTTATCTGATCCAGTGAAATG-AATTTTACATTAAGA-GGCATGTTAATTGAAAGCTGAAGATTAACGATTTTTACTCACA-------TAAGTTACAATTCACTTCTGCTA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 28540768 282 + 29863360 TCAGTGCATTTATGTGAATAGAATTAAATTTGCCAAGTACTAATTGGTAACTATACATCTC-----TTTGCATAGTTA-TAATCTATTCATTTCT-AAAAATCTAATAAAAATGTGTCCTGAATATTATCACATCTAAAATGATAA--A-TTTTGAATATCCTGGTAATAAAGAAGAGAATGTATGTTATCTGATCCAGTGAAGTGAA--TTTGCATTAAGATGGCATGCTAATTGAGAACTGAAGATTAATGATTTTTACTCCTA--TGTATTTAGTTTAAATTCACTTCTGCCA i otoGar3.GL873536 C 0 I 286 s canFam3.chr3 14332051 284 + 91889043 TCAGTGAATTTGCATAAGCAGAAACTCATTTGCATAGGACAAATTGA----TGTACATCTGATGCATATCTGTACTTAGTAATCAATGCATTTGC-AAAAATCTAATAAAAATGTGTCCTGAACAT-ACAAGATCTAAAATGATAAATA-TATTAAATATCCT-TCAGTAGAAAAGAGATTG--AGTTATCTGATCCAGTGAAATTAATTTTT--AGTAAGATGGCATATTAATTGAAAGCTTAAGATTAATGATTTTTACTTGCCTGTATATTAAGTCACAATTCACTTCTGCCA i canFam3.chr3 C 0 I 5 s dasNov3.JH570378 1258403 273 - 11655695 TTATTGAGAAAG-ATAAGCAGGAATGCATTTGCAAAGTAAAAATTGA----TACATATCTG-----TTTGCCTAGTTAGTAATCTATGCATTTGC-AAAATTCTAATAAAAACATGTCCCAAACATGGC-AGatttaaaataataa--attattaaatatCCTGGCAATAGAGAAGAGAATG--AGTTATCTGATCCAGTGAAATGAAA-TTTGCAT------GGCATGTTATTTGAGAGTTGAAGATTAATGATCTTTACCTACATGCATATTGAGTCACAGTTCACTTTTACCA i dasNov3.JH570378 C 0 I 5 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76468460 10897 + 120421639 I a score=3138826.000000 s hg38.chr5_GL383530v1_alt 67370 272 + 101241 CTTTTCAAACAGCAAAAGTATTAGATTTTTCCTTCACTTTGGCAGTTTAGCTTTTAACTTTGTTTTACTGGC-----TTTCTTTCACTCACTCATGTACTTACTAACTTATGAattcattcatttgattaattttt-aaatgtgcatttatgctaatttctataggagacataagtg-aagaaagaaatccctattcttcaggaatttataatttattagagaagTTAAAATAATACAACATGAAACAGTAGATACGGACTTCTAGTTCAAGATGGCAG s panTro5.chr5 20300168 272 + 181907262 CTTTTCAAACAGCAAAAGTATTAGGTTTTTCCTTCACTTTGGCAGTTTAGCTTTTAACTTTGTTTTACTGGC-----TTTCTTTCACTCACTCATGTACTTACTAACTTATGAattcattcatttgattaattttt-aaatgtgcatttatgctaatttctataggagacataagtg-aagaaagaaatccctattcttcaggaatttataatttattagagaagttaaaataatacaatatgaaacagtAGATACGGACTTCTAGTTCAAGATGGCAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20312491 272 + 183735486 CTTTTCAAACAGCAAAAGTATTAGGTTTTTCCTTCACTTTGGCAGTTTAGCTTTTAACTTTGTTTTACTGGC-----TTTCTTTCACTCACTCATTTACTTACTAACTTATGAattcattcatttgattaattttt-aaatgtgcatttatgctaatttctataggagacataagtg-aagaaagaaatccctattcttcaggaatttataatttattagagaagttaaaataatacaatatgaaacagtAGATACGGACTTCTAGTTCAAGATGGCAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4799253 272 - 13748885 CTTTTCAAACAGCAAAAGTATTAGGTTTTTCCTTCACTTTGGCAGTTTAGCTTTTAACTTTGTTTTACTGGC-----TTTCTTTCACTCACTCATGTACTTACTAACTTATGAATTCATTCATTTGATTAATTTTT-AAATGTGCATTTATGCTAATTTCTATAGGAGACATAAGTG-AAGAAAGAAATCCCAATTCTTCAGGAATTTATAATTTATTAGAGAAGTTAAAATAATACAATATGAAACAGTAGATACGGACTTCTAGTTCAAGATGGCAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53830972 272 - 163208435 CTTTTCAAACAGCAAAAGTATTAGGTTTTTCCTTCACTTTGGCAGTTTAGCTTTTAACTTTGTTTTACTGGC-----TTTCTTTCACTCACTCATGTACTTACTAACTTGGGAattcattcatttgattaattttt-aaatgtacatttatgctaatttctataggaaacataagtg-aagaaagaaatccctattctgcaggaatttataatttattagagaagTTAAAATAATGTAATATGAAACAGTAGATACGGACTTCTAGTTCAAGATGGCAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87854099 272 - 180051392 CTTTGCAAACAGCAAAAGTATTAGGTTTTTCCTTCACTTTGGCAGTTTAGCTTTTAACTTTGTTTTACTGAC-----TTGCTTTCACTCACTCATGTACTTACTAACTTATGAATTCATTCATCTGATTAATTTTT-AAATGTGCATTTATACTAATTTCTATAGGAGACATAAGTG-AAGAAAGAAATCCCTATTCTGCAGGAATTTATAATTTATTAGAGAAGTTAAAATAATATAATATGAAACAGTAGATACAGACTTCTAATTCAAGATGGCAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87958526 272 - 181584905 CTTTGCAAACAGCAAAAGTATTAGGTTTTTCCTTCACTTTGGCAGTTTAGTTTTTAACTTTGTTTTACTGAC-----TTGCTTTCACTCACTCATGTACTTACTAACTTATGAATTCATTCATCTGATTAATTTTT-AAATGTGCATTTATACTAATTTCTATAGGAGACATAAGTG-AAGAAAGAAATCCCTATTCTGCAGGAATTTATAATTTATTAGAGAAGTTAAAATAATATAATATGAAACAGTAGATACAGACTTCTAATTCAAGATGGCAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1186036 272 - 8785636 CTTTGCAAACAGCAAAAGTATTAGGTTTTTCCTTCACTTTGGCAGTTTAGCTTTTAACTTTGTTTTACTGAC-----TTGCTTTCACTCACTCATGTACTTACTAACTTATGAATTCATTCATCTGATTGATTTTT-AAATGTGCATTTATACTAATTTCTATAGGAGACATAAGTG-AAGAAAGAAATCCCTATTCTGCAGGAATTTATAATTTATTAGAGAAGTTAAAATAATATAATATGAAACAGTAGATACAGACTTCTAATTCAAGATGGCAC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1649662 272 + 27333823 CTTTGCAAACAGCAAAAGTATTAGGTTTTTCCTTCACTTTGGCAGTTTAGCTTTTAACTTTGTTTTACTGAC-----TTGTTTTCACTCACTCATGTACTTACTAACTTATGAATTCATTCATCTGATTAATTTTT-AAATGTGCATTTATACTAATTTCTATAGGAGACATAAGTG-AAGAAAGAAATCCCTATTCTGCAGGAATTTATAATTTATTAGAGAAGTTAAAATAATATAATATGAAACAGTAGATACAGACTTCTAATTCAAGATGGCAC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1919632 272 - 91010382 CTTTGCAAACAGCAAAAGTATTAGGTTTTTCCTTCACTTTGGCAGTTTAGCTTTTAACTTTGTTTTACTGAC-----TTGGTTTCACTCACTCATGTACTTACTAACTTATGAATTCATTCATCTGATTAATTTTT-ACATGTGCATTTATGCTAATTTCTATAGGAGACATAAGTG-AAGAAAGAAATCCCTATTCTGCAGGAATTTATGATTTATTAGAGAAGTTAAAATAATTTAATATGAAACAGTAGATACAGACTTCTAGTTCAAGATGGCAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2039044 272 + 5179401 CTTTGCAAACAGCAAAAGTGTTAGGTTTTTCCTTCACTTTGGCAGTTTAGCTTTTAACTTTGTTTTACTGAC-----TTGCTTTCACTCACTCATGTACTTACTAACTTATGAATTCATTCATCTGATTAATTTTT-AAATGTGCATTCATACTAATTTCTATAGGAGACATAAGTG-AAGAAAGAAATCCCTATTCTGCAGGAATTTATAATTTATTAGAGAAGTTAAAATAATATAATATGAAACAGTAGATACAGACTTCTAATTCAAGATGGCAC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7741572 272 - 21726897 CTTTTCAAACAGCAAAAGTATTAGGTTTTTCCTTCACTTTGGCAGTTTAGCTTTTAACTTTGTTTTACTGAC-----TTGCTTTCACTCACTCATGTAGTTACTAACTTGTGAattcattcatctgattaattttt-atatgtgcatttatgctaatttctataggagacataagtg-aagaaagaaatccctattctggaggaatttataatttattagagaagTTAAAATAATTTAATATGAAACAGTAGATACAGACTTCTAGTTCAAGATGGCAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112553664 268 + 204313951 CTTTTCAAGTAGCAAAAGTATTAGGTTTTTCCTTCACTTGGGCAGTTTAACTTTTAACTTTGTTTTACTGGC-----TTTCTtttattcactcatttacttactaacttatcaattcatttatttgtttaatttttaaaatatgcatttatGCTAATTTCTGTAAAAGGCAT------AAGAAAGAAATCCCTATTCTGCAGGAATTTATGATTTATTAGGGGAGTGAAAATAATATAACATGAAACAGTAGATATGGACTTGTAGTTCAAGATGGCAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45001374 264 + 71252344 CTTTTCAAGTAGCAAAAGTATTAGGTTTTTCCTTCACTTGGGCAGTTTAACTTTTAACTTTGTTTTACTGGC-----TTTCTTTCACTCACTCATTTACTTACTAACTTATCAATTC----ATTCGTTTAATTTTTAAAATGTGCATTTATGCTAATTTCTGTAAAAGACAT------AAGAAAGAAATCTTTATTCTGCAGAGATTTATAATTTATTAGGGAAGTGAAAATAATATGAGGTGAAACAGTGGATATGGACTTGTAGTTCAAGATGGCAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 364269 259 - 1393929 CTTTTCAAGTAGCAAAAGTATTAGGTTTTTCCTTCATTTGGGCAGTTTAACTTTTAACTTTGTTttactggc-----tttctttcactcactcatttacttactaacttaTC---------ATTTGTTTAATTTTTAAAATGCGCATTTATGCTAATTTCTGTaaaagagat------aagaaagaaatccctattctgcaggaatttataatttattagggaagtgaaaataatataacacgaaacagtAGATAtggacttatagttcaagatggcca i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1437630 235 - 15889662 CTT-------------AGTATTAGGTTTTTCCTTCACTTGGGCAGTTTAACTTTTAACTTTGTTTTACTGGC-----TTTCTTTCACTCACTCATTTACTTACTAACTTATCAATTCATTCATTTGTTTAATTTTAAAAATGTGCATTTATGCTAATTTCTg--------------------------tccctattctgcaggaatttataatttattagggaagtgaaaataatataacatgaaacagtAGATATGGACTTGTAGTTCAAGATGGCAG i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 28541336 275 + 29863360 CTTTTCAAATAGTGAAAACATTGGG-TTTCCTTTCACCCAGGGGGCTTAGCTTTTAGCTTTGATTTACTGGCTTTTTTTTTTTTCATTCACTCCTTGACATCCTACCTCattaaattttttatttgattaacttttaaaatactaatttatGCTAATTTCTATAAGCGATATAAATG-AAAACAGA--TCTCTATTCTTCAGGAATTTATAATGTAGTAGAGAAATTAAAATAAAATAATAGAAGGTAATAGATATGAACTTCTAATTCAAGATGGCAG i otoGar3.GL873536 I 286 n 286 s canFam3.chr3 14332340 247 + 91889043 CTTCTCAAATAATCAAAGTATTGAATTTTTCCTTCACTTGGGCAAGTTAGCTTTTAACATGGTTTTACTGGT-----GTTCTTTAACTCACTCATTCACTT----ATGCAGCAATTCCtttattaaattaatttttaaaGTGTGCCTTTATACTAATTTCTACAGGAGATGTAAATA-AAAACAGAAATCCTTATTCTACAGAAATTTATAATTTATTAGAGAAATTAAAATAACATAATATG--------------GACTTCCAGTTCAA-------- i canFam3.chr3 I 5 C 0 s dasNov3.JH570378 1258681 232 - 11655695 CTTCTCAAATGGTGGAAGT-TTGGGTTTTTCCTTCCCATGGGCAGCTTAGC-----ATTTTGTTTTCTTGGA-----TTTCTTTCG--CACGCATTTACTCAGTAACTCACCAATTTAA------------------AACTGTGTATTTTTGCTTATTTCTGTAGGAGATATAAATATCAAAAATAAATCCCTATTCTGGAGGAGCTTGAAATTTATTAGA----TTAAAATAA---AATATGAAGTAGTGAAAATTAACTTCTAGTTCC--------- i dasNov3.JH570378 I 5 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76468460 10897 + 120421639 I a score=420067.000000 s hg38.chr5_GL383530v1_alt 67642 38 + 101241 TCTGAGTAACCATGTCAGCTTCCCTTTGCCCAGCATAG s panTro5.chr5 20300440 38 + 181907262 TCTGAGTAACCATGTCAGCTTCCCTTTGCCCAGCATAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20312763 38 + 183735486 TCTGAGTAACCATGTCAGCTTCCCTTTGCCCAGCATAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4799525 38 - 13748885 TCTGAGTAACCATGTCAGCTTCCCATTTCCCAGCATAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53831244 38 - 163208435 TCTGAGTAACTATGTCAGCTTCCCTTTGCCCAGCATAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87854371 38 - 180051392 TCTGAGTAACCATGTCAGCTTCCCTTTGCCCAGCATAG i rheMac8.chr6 C 0 I 1080 s macFas5.chr6 87958798 38 - 181584905 TCTGAGTAACCATGTCAGCTTCCCTTTGCCCAGCATAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1186308 38 - 8785636 TCTGAGTAACCATGTCAGCTTCCCTTTGCCCAGCATAG i macNem1.NW_012011400v1 C 0 I 1078 s cerAty1.NW_012002401v1 1649934 38 + 27333823 TCTGAGTAACCATGTCAGCTTCCCTTTGCCCAGCATAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1919904 38 - 91010382 TCTGAGTAACCATGTCAGCTTCCCTTTGCCCAGCATAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2039316 38 + 5179401 TCTGAGTAACCATGTCAGCTTCCCTTTGCCCAGCATAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7741844 38 - 21726897 TCTGAGTAACCATGTTAGCTTCCCTTTGCCCAGCATAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112553932 38 + 204313951 TCTGAGTACCCATGTCAGCTTCCCTTTGCCCAGCATAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45001638 38 + 71252344 TCTGAGTACCCATGTCAGCTTCCCTTTGCCCAGCATAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 364528 38 - 1393929 tctgagtacccatgtcagcttccctTTGCCCAGCATAG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1437865 38 - 15889662 TCTGAGTACCCATGTCAGCTTCCCTTTGCGCAGCATAG i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14332587 32 + 91889043 ---TAGTACATGTGTCAGCTTCCCTTTGCCCCGAC--- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1258913 35 - 11655695 TTTGTCCCAACATGT--ACACACACATGGCCA-CATAG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I a score=68445.000000 s hg38.chr5_GL383530v1_alt 67680 10 + 101241 AGACACTCAT s panTro5.chr5 20300478 10 + 181907262 AGACACTCAT i panTro5.chr5 C 0 I 1051 s panPan2.chr5 20312801 10 + 183735486 AGACACTCAT i panPan2.chr5 C 0 I 1047 s gorGor5.CYUI01014999v1 4799563 10 - 13748885 AGACACTCAT i gorGor5.CYUI01014999v1 C 0 I 1041 s nomLeu3.chr2 53831282 10 - 163208435 AGACACTCAT i nomLeu3.chr2 C 0 I 1052 s macFas5.chr6 87958836 10 - 181584905 GCACACGCAT i macFas5.chr6 C 0 I 1070 s cerAty1.NW_012002401v1 1649972 10 + 27333823 GCACACTCAT i cerAty1.NW_012002401v1 C 0 I 1063 s chlSab2.chr4 1919942 10 - 91010382 ACACACTTAT i chlSab2.chr4 C 0 I 1068 s manLeu1.NW_012103732v1 2039354 10 + 5179401 GCACACTCAT i manLeu1.NW_012103732v1 C 0 I 1070 s colAng1.NW_012115488v1 7741882 10 - 21726897 ACACACTCAT i colAng1.NW_012115488v1 C 0 I 1049 s calJac3.chr2 112553970 9 + 204313951 ACACG-TCAT i calJac3.chr2 C 0 I 759 s saiBol1.JH378106 45001676 10 + 71252344 ACACACTCAT i saiBol1.JH378106 C 0 I 755 s cebCap1.NW_016107830v1 364566 10 - 1393929 ACACACTCAT i cebCap1.NW_016107830v1 C 0 I 1156 s aotNan1.NW_018506370v1 1437903 10 - 15889662 ACACATTCAT i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14332619 10 + 91889043 ATACACACAT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1258948 10 - 11655695 ATGCACACAC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e macNem1.NW_012011400v1 1186346 1078 - 8785636 I e rheMac8.chr6 87854409 1080 - 180051392 I a score=13923.000000 s hg38.chr5_GL383530v1_alt 67690 1 + 101241 A s panTro5.chr5 20301539 1 + 181907262 a i panTro5.chr5 I 1051 C 0 s panPan2.chr5 20313858 1 + 183735486 a i panPan2.chr5 I 1047 C 0 s gorGor5.CYUI01014999v1 4800614 1 - 13748885 a i gorGor5.CYUI01014999v1 I 1041 C 0 s nomLeu3.chr2 53832344 1 - 163208435 a i nomLeu3.chr2 I 1052 C 0 s rheMac8.chr6 87855489 1 - 180051392 a i rheMac8.chr6 I 1080 C 0 s macFas5.chr6 87959916 1 - 181584905 a i macFas5.chr6 I 1070 C 0 s macNem1.NW_012011400v1 1187424 1 - 8785636 a i macNem1.NW_012011400v1 I 1078 C 0 s cerAty1.NW_012002401v1 1651045 1 + 27333823 a i cerAty1.NW_012002401v1 I 1063 C 0 s chlSab2.chr4 1921020 1 - 91010382 a i chlSab2.chr4 I 1068 C 0 s manLeu1.NW_012103732v1 2040434 1 + 5179401 a i manLeu1.NW_012103732v1 I 1070 C 0 s colAng1.NW_012115488v1 7742941 1 - 21726897 a i colAng1.NW_012115488v1 I 1049 C 0 s calJac3.chr2 112554738 1 + 204313951 a i calJac3.chr2 I 759 C 0 s saiBol1.JH378106 45002441 1 + 71252344 a i saiBol1.JH378106 I 755 C 0 s cebCap1.NW_016107830v1 365732 1 - 1393929 a i cebCap1.NW_016107830v1 I 1156 C 0 s aotNan1.NW_018506370v1 1437913 1 - 15889662 A i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14332629 1 + 91889043 A i canFam3.chr3 C 0 I 721 s dasNov3.JH570378 1258958 1 - 11655695 A i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I a score=13600.000000 s hg38.chr5_GL383530v1_alt 67691 1 + 101241 C s panTro5.chr5 20301540 1 + 181907262 c i panTro5.chr5 C 0 C 0 s panPan2.chr5 20313859 1 + 183735486 c i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4800615 1 - 13748885 c i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53832345 1 - 163208435 c i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87855490 1 - 180051392 c i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87959917 1 - 181584905 c i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1187425 1 - 8785636 c i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1651046 1 + 27333823 c i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1921021 1 - 91010382 c i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2040435 1 + 5179401 c i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7742942 1 - 21726897 c i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112554739 1 + 204313951 c i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45002442 1 + 71252344 c i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 365733 1 - 1393929 c i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1437914 1 - 15889662 C i aotNan1.NW_018506370v1 C 0 I 785 s dasNov3.JH570378 1258959 1 - 11655695 C i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14332630 721 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I a score=135368.000000 s hg38.chr5_GL383530v1_alt 67692 14 + 101241 CTAATTCACAAGGG s panTro5.chr5 20301541 14 + 181907262 ctaattcacgaggg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20313860 14 + 183735486 ctaattcacgaggg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4800616 14 - 13748885 ctaattcatgaggg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53832346 14 - 163208435 ctaattcacgaggg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87855491 14 - 180051392 ctaattcatgaggg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87959918 14 - 181584905 ctaattcatgaggg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1187426 14 - 8785636 ctaattcatgaggg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1651047 14 + 27333823 ctaattcatgaggg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1921022 14 - 91010382 ctaattcatgaggg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2040436 14 + 5179401 ctaattcatgaggg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7742943 14 - 21726897 ctaattcatgaggg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112554740 14 + 204313951 ctaattcacaagga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45002443 14 + 71252344 ctaattcacgagga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 365734 14 - 1393929 ctaattcatgagga i cebCap1.NW_016107830v1 C 0 C 0 s canFam3.chr3 14333351 14 + 91889043 ctaatccagattag i canFam3.chr3 I 721 C 0 s dasNov3.JH570378 1258960 11 - 11655695 ---ATGCACAAAGG i dasNov3.JH570378 C 0 I 263 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e aotNan1.NW_018506370v1 1437915 785 - 15889662 I a score=716737.000000 s hg38.chr5_GL383530v1_alt 67706 81 + 101241 Tctcatctcaagatctttaccttaattataccttcaaaggccctattccagataaggt--cactcagaggttctggatagact s panTro5.chr5 20301555 81 + 181907262 tctcatctcaagatctttaccttaattatatcttcaaaggccctattctagataaggt--cactcagaggttccggatagaca i panTro5.chr5 C 0 C 0 s panPan2.chr5 20313874 81 + 183735486 tctcatctcaagatctttaccttaattatatcttcaaaggccctattctagataaggt--cactcagaggttccggatagaca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4800630 81 - 13748885 tctcatctcaagatctttaccttaattatatcttcaaaggccctattccaaataaggt--cactcagaggttctggatagaca i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53832360 81 - 163208435 tctcatctcaagatccttaccttaattatatcttcaaaggccctattccaaataaggt--cactcagaagttctggatagaca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87855505 80 - 180051392 tctcatctcaagatgcttaccttaattatattttcaaagg-cctattccaaataaggt--cactctgaggttctggggacaca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87959932 80 - 181584905 tctcatctcaagatgcttaccttaattatattttcaaagg-cctattccaaataaggt--cactctgaggttctggggacaca i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1187440 80 - 8785636 tctcatctcaagatgcttaccttaattatattttcaaagg-cctattccaaataaggt--cactctgaggttctggggacaca i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1651061 80 + 27333823 tctcatctcaagatgcttaccttaattatattttcaaagg-cctattccaaataaggt--cactctgaggttctggggacaca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1921036 80 - 91010382 tctcatctcaagatccttaccttaattatattttcaaagg-cctattccaaataaggt--cactctgaggttctggatagaca i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2040450 80 + 5179401 tctcatctcaagatgcttaccttgattatattttcaaagg-cctattccaaataaggt--cactctgaggttctggggacaca i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7742957 80 - 21726897 tctcatctcaagatgcttaccttaattatattttcaaagg-cctattccaaataaggt--cactctgaggttctggatagaca i colAng1.NW_012115488v1 C 0 I 1 s calJac3.chr2 112554754 81 + 204313951 tctcatttcaaaatccttaccttaattacatcttcaaaggccctattccaaataaggt--cactctgacgttctgggTAGACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45002457 81 + 71252344 tctcatttcaagatccttaccttaattatatcttcaaaggccctattccaaataaggt--cactctgaggttctgggtagaca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 365748 81 - 1393929 tctcatttcaagatccttaccttaattatatcttcaaaggccctattccaaataaggt--cactctgaggttctgggtagaca i cebCap1.NW_016107830v1 C 0 C 0 s canFam3.chr3 14333365 75 + 91889043 cctcatat--------ttaccttaattacatcttgaaagacctttttcaaaaaaaggttatattctgaggttccaggTGAACT i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258971 263 - 11655695 I e mm10.chr13 76468460 10897 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e aotNan1.NW_018506370v1 1437915 785 - 15889662 I a score=434503.000000 s hg38.chr5_GL383530v1_alt 67787 45 + 101241 tgtcttttggggtcaacaattcaatccattataGAAAC--ATAGCAC s panTro5.chr5 20301636 45 + 181907262 tgtcttttggggtcaacaattcaatccaTTATAGAAAC--ATGGCAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20313955 45 + 183735486 tgtcttttggggtcaacaattcaatccaTTATAGAAAC--ATAGCAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4800711 45 - 13748885 tgtcttttggggtcaacaattcaatccaTTATAGAAAC--ATAGCAC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53832441 45 - 163208435 tatcttttggggtcaacaattcaatccattatagaaac--ataacac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87855585 45 - 180051392 tatcttttggggtcaacaattcaatccGTTATAGAAAC--ATAGCAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87960012 45 - 181584905 tatcttttggggtcaacaattcaatccgtTATAGAAAC--ATAGCAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1187520 45 - 8785636 tatcttttggggtcaacaattcaatccGTTATAGAAAC--ATAGCAC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1651141 45 + 27333823 tatcttttggggtcaacaattcaatccGTTATAGAAAC--ATAGCAC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1921116 45 - 91010382 tatgttttggggtcaacaattcaatccatTATAGAAAC--ATAGCAC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2040530 45 + 5179401 tatcttttggggtcaacaattcaatccGTTATAGAAAC--ATAGCAC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7743038 45 - 21726897 tatcttttggggtcaacaattcaatccaTTATAAAAAC--ATAGCAC i colAng1.NW_012115488v1 I 1 C 0 s calJac3.chr2 112554835 47 + 204313951 TATCTTTCGGGGTCAGCAGTTCAATCCCTTGTAGAAACATATAGCAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45002538 45 + 71252344 tatcttttggggtcaacagttcaatccCTTGTAGAAAC--ATAGCAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 365829 45 - 1393929 catcttttggggtcaacagttcaatccCTTGTAGAAAC--ATAGCAC i cebCap1.NW_016107830v1 C 0 C 0 s mm10.chr13 76479357 45 + 120421639 TATCTTTAGGTAACCACCATTCAGTTTACTATATAAAC--ATATCAA i mm10.chr13 I 10897 C 0 s canFam3.chr3 14333440 31 + 91889043 TATCTTCT--------------CATCTACTACAGAAAC--ATATGAC i canFam3.chr3 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1258971 263 - 11655695 I e otoGar3.GL873536 28541611 286 + 29863360 I e aotNan1.NW_018506370v1 1437915 785 - 15889662 I a score=2362368.000000 s hg38.chr5_GL383530v1_alt 67832 254 + 101241 AGGAATGGAAAACATGAGAGCA--------------------------------AAAGTGTTTAAGGACCCAAAGCATAAA-----TCCAGTTG-----gaagtaacgttcaaaa-----------------------tatttacctacg--tgtatgacataggcaca---gactgatcaaaatg--gaagccatccaATCAGAAT---------------------------TATTGT------------------------------------------------------------------TCAGTCAG-GTGAATGTTAGTCCAAGA------------ttctaaagcagagaatagaagtggtgaagcagaggaaataatcaaagaaagagtagaagaaaatttttacaggcttaagaaagatta s panTro5.chr5 20301681 254 + 181907262 AGGAATGGAAAACATGAGATCA--------------------------------AAAGTGTTTAAGGACCCAAAGCATAAA-----TCCAGTTG-----gaagtaacgttcaaaa-----------------------tatttacctacg--tgtatgacataggcaca---gactgatcaaaatg--gaagccatccaATCAGAAT---------------------------TATTGT------------------------------------------------------------------TCAGTCAG-GTGAATGTTAGTCCAAGA------------ttctaaagcagagaatagaagtggtgaagcagaggaaataatcaaagaaagagtagaagaaaatttttacaggcttaagaaagaTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20314000 254 + 183735486 AGGAATGGAAAACATGAGATCA--------------------------------AAAGTGTTTAAGGACCCAAAGCATAAA-----TCCAGTTG-----gaagtaacgttcaaaa-----------------------tatttacctacg--tgtatgacataggcaca---gactgatcaaaatg--gaagccatccaATCAGAAT---------------------------TATTGT------------------------------------------------------------------TCAGTCAG-GTGAATGTTAGTCCAAGA------------ttctaaagcagagaatagaagtggtgaagcagaggaaataatcaaagaaagagtagaagaaaatttttacaggcttaagaaagaTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4800756 254 - 13748885 AGGAATGGAAAACATGAGAGCA--------------------------------AAAGTGTTTAAGGACCCAAAGCATAAA-----TCCAGTTG-----gaagtaacattcaaaa-----------------------tatttacctatg--tgtatgacataggcaca---gactgatcaaaatg--gaagccatccaATCAGAAT---------------------------TATTGT------------------------------------------------------------------TCAGTCAG-GTGAATGTTAGTCCAAGA------------ttctaaagcagagaatagaagtggtggagcagaggaaataatcaaagaaagagtagaagaaaatttttacaggcttaagaaagatta i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53832486 254 - 163208435 agggatggaaaatatgagagca--------------------------------aaagtgtttaaggacccaaagcataaa-----tccagTTG-----gaagtaacattcaaaa-----------------------tatttacctatg--tgtatgacataggcaca---gactgatcaaaatg--gaagccatccaATCAGAAT---------------------------TATTGT------------------------------------------------------------------TCAGTCAG-GTGAATGTTAGTCCAAGA------------ttctaaagcagagaatagaaatggtggagcagaggaaataatcaaagaaagagtagaagaaaatttttacaggcttaagaaagatta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87855630 254 - 180051392 AGGAATGGAAAACATGAGAGCA--------------------------------AAAGTATTTAAGGACCCAAAGCATAAA-----TCCAGTTG-----gaagtaacaatcaaaa-----------------------tatttaactact--tttatgacatagacaca---gactgattaaaatg--gaagccatccaGTCAGAAT---------------------------TATTGT------------------------------------------------------------------TCAGTCAG-GTGAATGTTAGtctaata------------ttctaaagcagagaatagaagtggggcagcagaggaaataatcaaagaaagagtagaagaaaatttttacaggcttaagaaagatta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87960057 254 - 181584905 AGGAATGGAAAACATGAGAGCA--------------------------------AAAGTATTTAAGGACCCAAAGCATAAA-----TCCAGTTG-----gaagtaacaatcaaaa-----------------------tatttaactact--tttatgacatagacaca---gactgattaaaatg--gaagccatccaGTCAGAAT---------------------------TATTGT------------------------------------------------------------------TCAGTCAG-GTGAATGTTAGtctaata------------ttctaaagcagagaatagaagtggggcagcagaggaaataatcaaagaaagagtagaagaaaatttttacaggcttaagaaagatta i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1187565 254 - 8785636 AGGAATGGAAAACATGAGAGCA--------------------------------AAAGTATTTAAGGACCCAAAGCATAAA-----TCCAGTTG-----gaagtaacaatcaaaa-----------------------tatttaactact--tttatgacatagacaca---gactgattaaaatg--gaagccatccaGTCAGAAT---------------------------TATTGT------------------------------------------------------------------TCAGTCAG-GTGAATGTTAGtctaata------------ttctaaagcagagaatagaagtggggcagcagaggaaataatcaaagaaagagtagaagaaaatttttacaggcttaagaaagatta i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1651186 254 + 27333823 AGGAATGGAAAACATGAGAGCA--------------------------------AAAGTGTTTAAGGACCCAAAGCATAAA-----TCCACTTG-----gaagtaacaatcaaaa-----------------------tatttaactact--tgtatgacatagacaca---gactgattaaaatg--gaagccatccaGTCAGAAT---------------------------TATTGT------------------------------------------------------------------TCAGTCAG-GTGAATGTTAGtctaata------------ttctaaagcagagaatagaagtggggcagcagaggaaataatcaaagaaagagtagaagaaaatttttacaggcttaagaaagatta i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1921161 249 - 91010382 AGAAATGGAAAACATGAGAGCA--------------------------------AAAGTGTTTAAGGACCCAAAGCATAAA-----TCCAGTTG-----gaagtaacattcaaaa-----------------------tatttaactact--tgtatgacataggcaca---gactgattaaaatg--gaagccatccatTCAGAAT---------------------------TATTGT------------------------------------------------------------------TCAGTCAG-GTGAACGTTAGTCCAATA------------TTCTaaagcag-----agaagtggtgcagcagaggaaataatcaaagaaagagtagaagaaaatttttacaggcttaagaaagatta i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2040575 254 + 5179401 AGGAATGGAAAACATGAGAGCA--------------------------------AAAGTATTTAAGGACCCAAAGCATAAA-----TCCAGTTG-----GAAGTAACAATCAAAA-----------------------TACTTAACTACT--TGTATGACATAGACACA---GACTGATTAAAATG--GAAGCCATCCAGTCAGAAT---------------------------TATTGT------------------------------------------------------------------TCAGTCAG-GTGAATGTTAGtctaata------------ttctaaagcagagaatagaagtggggcagcagaggaaataatcaaagaaagagtagaagaaaatttttacaggcttaagaaagatta i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7743083 254 - 21726897 AGAAATGGAAAACATGAGAGCA--------------------------------AAAGTGTTTAAGGACCGAAAGCATAAA-----TCCAGTTG-----GAAGTAACATTCAAAG-----------------------TATTTAACTTCT--TGTATGACATAGGCACA---GACCGATTAAAATG--GAAGCCATCCAGTAAGAAT---------------------------TATTGT------------------------------------------------------------------TCAATCAG-GTGAACGTTAGTTTAATA------------ttctaaagcagagaatagaagtggtgcagcagaggaaataatcaaagaaagagtagaagaaaatttttacaggcttaagaaagatta i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112554882 245 + 204313951 AGGAATGGAAAACATGAAGGCG--------------------------------AAAGTGTTTAAGGACCCAAGGCATAAG-----TCCAGTTG-----gaggtaacattcaaaa-----------------------tatttaactact--tgtatgacataggtagt---gactaatcaaaatg--gaagccatccaGTCAGAA----------------------------TATTGT------------------------------------------------------------------TCAGTCAG-GTGAATGTTAGTCCAAGA------------TTCTAAAGCAGAGAAGAGAAACAGCGAAGCAGAGGAAAT--------AAATGGTAGAAAAATTTTTTTACAGGCTTAAGAAAAATTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45002583 245 + 71252344 AGGAATGGAAAACATGAGAGCA--------------------------------AAAGTGTTTAAGGACCCAAGGCATAAG-----TCTAGTTG-----gaggtaacgttaaaaa-----------------------tatttaactact--tgtatgacataggcagt---gactgatcaaaatg--gaagccatccaATCAGAA----------------------------TATTGT------------------------------------------------------------------TCAGTCAG-GTGAATGTTAGTCCAAGA------------ttctaaagcagagaagagaagcagtggagccgaggaaat--------aaatagtagaaaattttttttacaggcttaagaaagagta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 365874 245 - 1393929 AGGAATGGAAAACATGAGAGCA--------------------------------AAAGTGTTTAAGGACCCAAGGCATAAG-----TCCATTTG-----gaggtaacattcaaaa-----------------------tatttaactgct--tgtatgacataggcagt---gactgatcaaaatg--aaagccatccaGTCAGAA----------------------------TATTGT------------------------------------------------------------------TCAGTCAG-GTGAATGTTAGTCCAAGA------------ttctaaagcagagaagagaagcagtggagcagaagaaat--------aagcagtagaaaaaattttttacaggcttaagaaagatta i cebCap1.NW_016107830v1 C 0 C 0 s mm10.chr13 76479402 238 + 120421639 TAGAATGGAAGGCTTGAGAGCA--------------------------------AACGTGGTTCCGGACCCAAGACATAAT-----CTCAGTGA-----GTCAACACTTCCAGGC-----------------------TCCTGAGACAAT--GAGGTGGAATGGATTCA---GGTTTATCAAAATG--TAAGCTATCTTGTCATGAT---------------------------CAT-------------------------------------------------------------------------------GGAACATTTGTCTAGGG------------TTTCAAGGCAAAGAATAGGGACAGGGGAGCAGGGGAAAGGAGCAATGAAATA----AAGGAAAAGTTTGTAAGCTTACTCAAGATTA i mm10.chr13 C 0 C 0 s canFam3.chr3 14333471 239 + 91889043 AGAAATGGAAAATATGAGATCA--------------------------------GAAGTCTTTAAGGAACAAAAGAATAAA-----TCCAGTCG-----AAATTACCATCCAAAA-----------------------TATTTAACCCAT--GGTGTGGCATAGCCATA---AATTGATCAAAATG--GAAGCTCTCCAGTCAGAAtttt------------------ttaagattttat------------------------------------------------------------------ttattcat-gaga------------------------------gacacacagag-agaggcagag-acaagaggaaat----aaagaactagcagaagaaaaTATCTTGAGGCTTAAGAAAGGTTA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1259234 432 - 11655695 aggaatcaaaattaagaaaataatctgggaagttaaatatataattattgcaataaaaTTTTGAATTGTCTGAATCACAAGATGCTTGTAGTTGAAAATAAAGTAAGAATCGGAAAGATAAAGCCAAGGAAACtgtattagtttcctatgactgtgggacaaagtcccacttggtggcttaaaacaacaaatttattcagtcacagttctagatgccaaaagccaaaattaaggtgttgtcagggctgattctttctggaggctccgagggagaatctattcatgcctttctcctaatttctggtgtctgtcagcaTGGATGTTAACTGAACATTACCTCaggatttccaaagcagagaataaggacagtggaacagaaaaaataatcaaagaaatagtgtaagaaaatatctgtaagcttaagaaagaTGA i dasNov3.JH570378 I 263 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 28541611 286 + 29863360 I e aotNan1.NW_018506370v1 1437915 785 - 15889662 I a score=47852.000000 s hg38.chr5_GL383530v1_alt 68086 5 + 101241 attct s panTro5.chr5 20301935 5 + 181907262 ATTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20314254 5 + 183735486 ATTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4801010 5 - 13748885 attct i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53832740 5 - 163208435 attct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87855884 5 - 180051392 attct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87960311 5 - 181584905 attct i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1187819 5 - 8785636 attct i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1651440 5 + 27333823 attct i cerAty1.NW_012002401v1 C 0 C 0 s manLeu1.NW_012103732v1 2040829 5 + 5179401 attct i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7743337 5 - 21726897 attct i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112555127 5 + 204313951 ATTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45002828 5 + 71252344 attct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 366119 5 - 1393929 attct i cebCap1.NW_016107830v1 C 0 C 0 s mm10.chr13 76479640 5 + 120421639 CTTGT i mm10.chr13 C 0 C 0 s canFam3.chr3 14333710 5 + 91889043 AATCT i canFam3.chr3 C 0 I 163 s dasNov3.JH570378 1259666 5 - 11655695 ATTTT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 28541611 286 + 29863360 I e aotNan1.NW_018506370v1 1437915 785 - 15889662 I e chlSab2.chr4 1921410 0 - 91010382 C a score=10920.000000 s hg38.chr5_GL383530v1_alt 68091 1 + 101241 t s panTro5.chr5 20301940 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 20314259 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4801015 1 - 13748885 t i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53832745 1 - 163208435 t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87855889 1 - 180051392 t i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87960316 1 - 181584905 t i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1187824 1 - 8785636 t i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1651445 1 + 27333823 t i cerAty1.NW_012002401v1 C 0 C 0 s manLeu1.NW_012103732v1 2040834 1 + 5179401 t i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7743342 1 - 21726897 t i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112555132 1 + 204313951 T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45002833 1 + 71252344 t i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 366124 1 - 1393929 t i cebCap1.NW_016107830v1 C 0 C 0 s mm10.chr13 76479645 1 + 120421639 T i mm10.chr13 C 0 I 2004 s dasNov3.JH570378 1259671 1 - 11655695 T i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14333715 163 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e otoGar3.GL873536 28541611 286 + 29863360 I e aotNan1.NW_018506370v1 1437915 785 - 15889662 I e chlSab2.chr4 1921410 0 - 91010382 C a score=107610.000000 s hg38.chr5_GL383530v1_alt 68092 17 + 101241 agctgggagtggtggct s panTro5.chr5 20301941 17 + 181907262 Agctgggagttgtggct i panTro5.chr5 C 0 C 0 s panPan2.chr5 20314260 17 + 183735486 Agctgggagttgtggct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4801016 17 - 13748885 agctgggagtggtggct i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53832746 17 - 163208435 agccaggagtggtggct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87855890 17 - 180051392 ggccgggagtggtggct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87960317 17 - 181584905 ggccgggagtggtggct i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1187825 17 - 8785636 ggccgggagtggtggct i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1651446 17 + 27333823 ggccgggagtggtggct i cerAty1.NW_012002401v1 C 0 C 0 s manLeu1.NW_012103732v1 2040835 17 + 5179401 ggccaggagtggtggct i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7743343 17 - 21726897 ggccaggagtggtggct i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112555133 17 + 204313951 ggctgggcatggtagct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45002834 17 + 71252344 tgctgggcatggtagct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 366125 17 - 1393929 ggctaggcatggtagct i cebCap1.NW_016107830v1 C 0 C 0 s dasNov3.JH570378 1259672 17 - 11655695 TTTTTAATCTGGTTGTT i dasNov3.JH570378 C 0 I 176 e canFam3.chr3 14333715 163 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e aotNan1.NW_018506370v1 1437915 785 - 15889662 I e chlSab2.chr4 1921410 0 - 91010382 C a score=1519436.000000 s hg38.chr5_GL383530v1_alt 68109 201 + 101241 catgcctgtaatcccagcactttgggagcctgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacacggtgaaaccccgtctgtaccaaaaatac-aaaaaattagttgggtctggcggcactcacctgtagtcccagctactcaggaggctgaggcaggagaatctcttgagcccaggaggcggt s panTro5.chr5 20301958 201 + 181907262 cactcctgtaatcccagcactttgggagcctgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctgtaccaaaaatac-aaaaaattaattgggcttggaggcactcacctgtagtcccagctactcaggaggctgaggcaggagaatctcttgagcccaggaggcggc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20314277 201 + 183735486 cactcctgtaatcccagcactttgggagcctgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctgtaccaaaaatac-aaaaaattagttgggcttggaggcactcacctgtagtcccagctactcaggaggctgaggcaggagaatctcttgagcccaggaggcggc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4801033 199 - 13748885 catgcctgtaatcccagcaatttgggagcctgaggtgggtggatcacccaaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctgtacc-aaaata--gaaaaattagttgggcctggcggcactcacctgtagtcccagctactcaggaggctgaggcaggagaatctcttgagcccaggaggcagt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53832763 201 - 163208435 cacacctgtaatcccagcactttgggagcctgaggtgggtggatcacccgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctgtaccaaaaatac-aaaaaagtagtcgggcctggtggcactcacctgtagtcccagctactcaggaggctgaggcaggagaatctcttgagcctgggaggcggc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87855907 201 - 180051392 cacgcctgtaatcccagcactttgggagcctgaggtgggtggatcaccctaggtcaggaattcaagaccagcctggccaacatggtgaaaccctgtctgtactaaaaatac-aaaaaattagccaggcctggtggcactcacctgtagtcccagctactcaggaggctgaggcaggagaatctctggagcccaggaggcgga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87960334 201 - 181584905 cacgcctgtaatcccagcactttgggagcctgaggtgggtggatcaccctaggtcaggaattcaagaccagcctggccaacatggtgaaaccctgtctgtactaaaaatac-aaaaaattagccaggcctggtggcactcacctgtagtcccagctactcaggaggctgaggcaggagaatctctggagcccaggaggcgga i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1187842 201 - 8785636 cacgcctgtaatcccagcactttgggagcctgaggtgggtggatcaccctaggtcaggaattcaagaccagcctggccaacatggtgaaaccctgtctgtactaaaaatac-aaaaaattagccaggcctggtggcacttacctgtagtcccagctactcaggaggctgaggcaggagaatctctggagcccaggaggcgga i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1651463 201 + 27333823 cacgcctgtaatcccagcactttgggagcctgaggtgggtggatcaccctaggtcaggaattcaagaccagcctggccaacatggtgaaaccctgtctgtactaaaaatac-aaaaaattagccaggcctggtggcactcacctgtagtcccagctactcaggaggctgaggcaggagaatctctggagcccaggaggcgga i cerAty1.NW_012002401v1 C 0 C 0 s manLeu1.NW_012103732v1 2040852 200 + 5179401 catgcctgtaatcccaggactttgggagcctgaggtgggtggatcaccctaggtcaggaattcaagaccagcctggccaacatggtgaaaccctgtctgtactaaaaatac-aaaaaattagccaggcctggtggcactcacctgtagtcccagctactcaggaggctgagg-agaagaatctcttgagcccaggaggcgga i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7743360 201 - 21726897 cacgcctgtaatcccagcactttgggagcctgaggtgggtggatcacccgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctgtactaaaaatac-aaaaaatttgccaggcctggtggcactcacctgtagtcccagctactcaggaggctgaggcaggagaatctcttgagcccaggaggcgga i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112555150 202 + 204313951 cacacctgtaatcccagcactttaggaggctgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctttactaaaaatataaaaaaattagccaggactggtggcacttgcctgtaatcccagctgctcaggagggtgaggcaggagaatctatcgagtccgggaggtgga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45002851 201 + 71252344 cacacctgtgattccagcgctttaggaggccgaggtgggtggatcagctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctttactaaaaatat-aaaaaattagctaggactggtggcacttgcctgtaatcccagctactcaggagggcgaggcaggagaatctattgagcccaggaggtgga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 366142 201 - 1393929 cacacctgtaatcccagcgctttgggaagccgaggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctttactaaaaatat-aaaaaattagccaggactggtggcacttgcctgtaatcccagctactcaggaggttgaggcaggagaatctattgagcctgggaggtgga i cebCap1.NW_016107830v1 C 0 C 0 e canFam3.chr3 14333715 163 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1259689 176 - 11655695 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e aotNan1.NW_018506370v1 1437915 785 - 15889662 I e chlSab2.chr4 1921410 0 - 91010382 C a score=461998.000000 s hg38.chr5_GL383530v1_alt 68310 90 + 101241 ggttgcagtgagctgagattaca-------------------------------------------------------------------------ccactgcactccagcctgggcaacagagcaagactccatctcaaaaa-----aagaaaaaaagaaaaaagag s panTro5.chr5 20302159 155 + 181907262 ggttgtagtgagctgagattgTAGTGAGCTGAGGTTGTAGTGAGCTGAGGCGGTGGTTGTAGTGAGCGGTTGTAGTgaggcggcggttgtagtgagctgttgcactccagcctgggcaacagagcaagactccatctcaaaaa-----aagaaaaaa--------gag i panTro5.chr5 C 0 C 0 s panPan2.chr5 20314478 154 + 183735486 ggttgtagtgagctgagattgTAGTGAGCTGAGGTTGTAGTGAGCTGAGGCGGTGGTTGTAGTGAGCGGTTGTAGTgaggcggcggttgtagtgagctgttgcactccagcctgggcaacagagcaagactccatctcaaaaa-----aagaaaaa---------gag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4801232 67 - 13748885 ggttgcagtgagctgagattgca-------------------------------------------------------------------------ccact----------------------gcaagactccatctcaaaaa-----agaaaaaaagaaaaaa-gag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53832964 82 - 163208435 ggttgcagtgagctgagattacg-------------------------------------------------------------------------ccattgcactccagcctgggcaacagagcaagactccatctcaaaaa-----aagaaaaaa--------gag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87856108 82 - 180051392 ggtggcagtgagctgagatcaca-------------------------------------------------------------------------cttctgcactccagcctgggcaacagagcaaggctctgtctcaaaaa-----aatgaaaga--------aag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87960535 83 - 181584905 ggtggcagtgagctgagatcaca-------------------------------------------------------------------------cttctgcactccagcctgggcaacagagcaaggctctgtctcaaaaa----aaaagaaaga--------aag i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1188043 78 - 8785636 ggtggcagtgagctgagatcaca-------------------------------------------------------------------------cttctgcactccagcctgggcaacagagcaaggctctgtctcaaaaa---------aaaga--------aag i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1651664 83 + 27333823 ggtggcagtgagctgagatcaca-------------------------------------------------------------------------cttctgcactccagcctgggcaacagagcaaggctctgtctcaaaaa----aaaagaaaga--------aag i cerAty1.NW_012002401v1 C 0 C 0 s manLeu1.NW_012103732v1 2041052 83 + 5179401 ggtggcagtgagctgagatcaca-------------------------------------------------------------------------cttctgcactctagcctgggcaacagagcaaggctctgtctcaaaaa----aaaagaaaga--------aag i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7743561 87 - 21726897 ggtggcagtgagctgagatcaca-------------------------------------------------------------------------ctcctgcactccagcctgggcaacagagcaaggctctgtctcaaaaaaaaaaaaagaaaga--------aag i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112555352 73 + 204313951 ggttgcagtgagccaagacaatg-------------------------------------------------------------------------cctctgtactcccacctgggcaacagagcaagactccatctcaaaaa----------------------aag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45003052 73 + 71252344 agttgcaatgagccaagataatg-------------------------------------------------------------------------ccactgtactccagcctgggcaacagagcaagactccatctcaaaaa----------------------agg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 366343 73 - 1393929 ggttgcagtgagccaagataatg-------------------------------------------------------------------------ccactgtactccagcctgggcaacagagcaagactccatctcaaaaa----------------------aag i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1438700 73 - 15889662 ggttgcagtgagccaaaataatg-------------------------------------------------------------------------ccactgtactccagcctaggcaacagagcaagactccatctcaaaaa----------------------aaG i aotNan1.NW_018506370v1 I 785 C 0 e canFam3.chr3 14333715 163 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1259689 176 - 11655695 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e chlSab2.chr4 1921410 0 - 91010382 C a score=76156.000000 s hg38.chr5_GL383530v1_alt 68400 8 + 101241 aaagattg s panTro5.chr5 20302314 8 + 181907262 aaaGATTg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20314632 8 + 183735486 aaaGATTg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4801299 8 - 13748885 aaagattg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53833046 8 - 163208435 aaagatta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87856190 8 - 180051392 aaagatta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87960618 8 - 181584905 aaagatta i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1188121 8 - 8785636 aaagatta i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1651747 8 + 27333823 aaagatta i cerAty1.NW_012002401v1 C 0 C 0 s manLeu1.NW_012103732v1 2041135 8 + 5179401 aaagatta i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7743648 8 - 21726897 aaagatta i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112555425 8 + 204313951 aaaGATTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45003125 8 + 71252344 aaagatta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 366416 8 - 1393929 aaagatta i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1438773 8 - 15889662 GAAGATTA i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1259865 8 - 11655695 GAAGATGA i dasNov3.JH570378 I 176 C 0 e canFam3.chr3 14333715 163 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e chlSab2.chr4 1921410 0 - 91010382 C a score=1972969.000000 s hg38.chr5_GL383530v1_alt 68408 188 + 101241 attcttgatttttaaagaattcagtaagtgccaagcaaggtaaatgaaaaagacaaaa-cttaggagaaattaattttgatactttctaggggaaatttcatcactccaagaataagagaaaatctgaaaagcttacagtaaaaagaaaattgtttacttacaaagaaattg-------tactagtcagggttctc s panTro5.chr5 20302322 188 + 181907262 attcttgatttttaaagaattcagtaagtgccaagcaagataaatgaaaaaggcaaaa-cttaggagaaattaattttgatactttctaggggaaatttcatcactccaagaataagagaaaatctgaaaagcttacagtaaaaagaaaattgtttacttacaaagaaattg-------tactagtcagggttctc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20314640 188 + 183735486 attcttgatttttaaagaattcagtaagtgccaagcaagataaatgaaaaagacaaaa-cttaggagaaattaattttgatactttctaggggaaatttcatcactccaagaataagagaaaatctgaaaagcttacagtaaaaagaaaattgtttacttacaaagaaattg-------tactagtcagggttctc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4801307 184 - 13748885 attcttgatttttaaagaattcagtaagtgccaagcaagataaatgaaaaagacaaaa-cttaggagaaaataattttgatactttctaggggaaatttcatcgctccaagaataagagaaaatctgaaaagcttacagtaaaaagaaaattgtttacttacaaagaaaTTG-------TACT----agagttctc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53833054 188 - 163208435 attcttgatttttaaagaattcagtaagtaccaagcaagataaatgaaaaagacaaaa-cttacgagaaattaattttgatactttctaggggaaatttcatcactccaagaataagagaaaatctgaaaagcttacagtaaaaagaaaattgtttacttacaaagaaattg-------tactagtcagggttctc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87856198 187 - 180051392 attcttgatttttaaagaattcagtaagtgccaagcaagagaaatgaaaaagacaaaa-cttaggataaattaatttggatactttctaggggaaatttcatcactccaagaacaagagaaaatctgaaaagcttacagtaaaaagaaaattgtttacttac-aagaaattg-------tactagtcagggttctc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87960626 187 - 181584905 attcttgatttttaaagaattcagtaagtgccaagcaagagaaatgaaaaagacaaaa-cttaggataaattaatttggatactttctaggggaaatttcatcactccaagaacaagagaaaatctgaaaagcttacagtaaaaagaaaattgtttacttac-aagaaattg-------tactagtcagggttctc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1188129 187 - 8785636 attcttgatttttaaagaattcagtaagtgccaagcaagagaaatgaaaaagacaaaa-cttaggataaattaatttggatactttctaggggaaatttcatcactccaagaacaagagaaaatctgaaaagcttacagtaaaaagaaaattgtttacttac-aagaaattg-------tactagtcagggttctc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1651755 187 + 27333823 attcttgatttttaaagaattcagtaagtgccaagcaagagaaatgaaaaaggcaaaa-cttaggataaattaatttggatactttctaggggaaatttcatcactccaagaacaagagaaaatctgaaaagcttacagtaaaaagaaaattgtttacttac-aataaattg-------tactagtcagggttctc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1921410 187 - 91010382 attcttgatttttaaagaattcagtaagtgccaagcaagataaatgaaaaagacaaaa-cttaggataaattaatttgtatactttctaggggaaatttcatcactccaagaataagagaaaatctgaaaagcttacagtaaaaagaaaattgtttacttac-aagaaattg-------tactagtcagggttctc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2041143 187 + 5179401 attcttgatttttaaagaattcagtaagtgccaagcaagagaaatgaaaaaggcaaaa-cttaggataaattaatttggatactttctaggggaaatttcatcactccaagaacaagagaaaatctaaaaagcttacagtaaaaagaaaattgtttacttac-aagaaattg-------tactagtcagggttctc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7743656 187 - 21726897 attcttgatttttaaagaattcagtaagtgccaagcaagataaatgaaaaagacaaaa-cttaggataaattaatttggatactttgtaggggaaatttcatcactccaagaataagagaaaatctgaaaagcttacagtaaaaacaaaattgtttacttac-aagaaattg-------tactagtcagcattctc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112555433 184 + 204313951 ATTCTTGATTtttaaagaattcagtaagtaccaagcaagataaatgaaaaagacaaaagcttag---aaattaatttagatactttctaggggaaatttcatcactctaagaataagacaaaatctgaaaagcttctagtg-aaagaaagttgtttacttac-aaaaaatta-------tagtagtcaggtttccc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45003133 181 + 71252344 attcttgatttttaaagaattcagtaagtatcaagcaagataaatgaaaaagacaaaaacttag---aaattaatttagatactttctaggggaaattt----aatccaagaataagacaaaatctgaaaagcttctagtgaaaagaaaattgtttacttac-aaaAAATTG-------TACTAGTCAGGTTTCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 366424 185 - 1393929 attcttgatttttaaagaattcagtaagtaccaagcaagataaatgaaaaaggcaaaaacttag---aaattaatttagatactttcttggggaaatttcatcgctctaagaataaggcaaaatctgaaaagcttctagtgaaaagaaaattgtttacttac-aaaaaattg-------tactagtcaaatttctc i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1438781 184 - 15889662 ATTCTTAATTTTTAAAGAATTCAG-Aagtaccaagcaagataaatgaaaaagacaaaaacttag---aaattaatttagatactttctaggggaaatttcatcactctaagaataagacaaaatctgaaaagcttctagtgaaaagaaaattgtttacttac-aaaaaattg-------tactagtcagggttctc i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1259873 194 - 11655695 ATTCTTGATTttgaaggaattcagtaagtgccaaacaagacaagtaaataaaaaacacacctaggagaaattaatttggatacttcccagaggaaatttcatcactccaaggataagagaaaatctaaaaagcttccagtgaaaagtaa-tggtttccctac-aaagaaacgttagaaatatgaatcagatttctc i dasNov3.JH570378 C 0 I 1238 e canFam3.chr3 14333715 163 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I a score=560913.000000 s hg38.chr5_GL383530v1_alt 68596 68 + 101241 caaagagac--aaccaataggagacagatcaataaatcaatc----aatagataag----atttgttagggaagttgg s panTro5.chr5 20302510 72 + 181907262 caaagagac--aaccaataggagacagatcaataaatcaatc----aatagataaggaagatttgttagggaagttgg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20314828 72 + 183735486 caaagagac--aaccaataggagacagatcaataaatcaatc----aatagataaggaagatttgttagggaagttgg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4801491 72 - 13748885 caaagagac--aaccaataggagacagatcaataaatcaatc----aatagataaggaagatttgttagggaagttgg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53833242 76 - 163208435 caaggagac--aaccaataggagacagatcaataaatcaattgatagatagataaggaagatttgttagggaagttgg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87856385 78 - 180051392 caaagagacagaaccaataggagacagatcaatgaatcaatcaatagatagataaggaggatttgttagggaaattgg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87960813 78 - 181584905 caaagagacagaaccaataggagacagatcaatgaatcaatcaatagatagataaggaggatttgttagggaaattgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1188316 78 - 8785636 caaagagacagaaccaataggagacagatcaatgaatcaatcaatagatagataaggaggatttgttagggaaattgg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1651942 78 + 27333823 caaagagacagaaccaataggagacagatcaatgaatcaatcaatagatagataaggaggatttgttagggaaattgg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1921597 76 - 91010382 caaagag--agaaccaataggagacagatcaatgaatcaatcaataggtagataaggaggatttgttagggaaattgg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2041330 78 + 5179401 caaagagacagaaccaataggagacagatcaatgaatcaatcaatagatagataaggaggatttgttagggaaattgg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7743843 77 - 21726897 caaagagacagaaccaataggagacagaacaatgaatcaatcaat-gatagataaggaggatttgttagggaaattgg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112555617 60 + 204313951 caaagagat----------------agatcagtaaatcaatctg--gatagataaggcgcatttgtttgggtaattgg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45003314 62 + 71252344 CAAAGAAAT----------------AGATCAATAAATCAATCTGTAGATAGCTAAGGAGCATTTGTTTGGGAAATTGG i saiBol1.JH378106 C 0 I 113 s cebCap1.NW_016107830v1 366609 62 - 1393929 caaagagat----------------acatcaataaatcaatctgtagatagataaggagcatttgtttgggaaattgg i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1438965 62 - 15889662 caaagagat----------------agatcaataaatcaatctgtagatagataaggagcatttgtttgggaaattcg i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14333715 163 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1260067 1238 - 11655695 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I a score=838667.000000 s hg38.chr5_GL383530v1_alt 68664 100 + 101241 ttcacatgattatggaggctgggaagtcccatgacagaccatttgcaaactggagaa-ccaggg-agccagtagtgtggctcagtttaagtccaaaggcctt s panTro5.chr5 20302582 100 + 181907262 ttcacatgattgtggaggctgggaagtcccatgacagaccatttgcaaactggagaa-ccaggg-agccagtagtgtggctcagtttaagtccaaaggcctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20314900 100 + 183735486 ttcacatgattatggaggctgggaagtcccatgacagaccatttgcaaactggagaa-ccaggg-agccagtagtgtggctcagtttaagtccaaaggcctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4801563 101 - 13748885 ttcacatgattatggaggctgggaagtcccatgacagaccatttgcaaactggagaa-ccagggaagccagtagtgtggctcagtttaagtccaaaggcctt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53833318 101 - 163208435 ttcacatgattatggaggctgggaagtcccatgacagaccatctgcaaactggagaa-ccagggaagccagtagtgtggctcagtttcagtccaaaggcctt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87856463 102 - 180051392 ttcacatgattttagaggctgggaagtcccatgacagacaacctgcaaactagagaacccagggaagccagtagtgtggcacagtttaagtccaaaggcctt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87960891 102 - 181584905 ttcacatgattttagaggctgggaagtcccatgacagacaacctgcaaactagagaacccagggaagccagtagtgtggcacagtttaagtccaaaggcctt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1188394 102 - 8785636 ttcacatgattttagaggctgggaagtcccatgacagacaacctgcaaactagagaacccagggaagccagtagtgtggcacagtttaagtccaaaggcctt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1652020 102 + 27333823 ttcacatgattttagaggctgggaagtcccatgacagacaacctgcaaattagagaacccagggaagccagtagtgtggcacagtttaagtccaaaagcctt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1921673 101 - 91010382 ttcacatgattttggaggctgggaagtcccatgagagaccacctgcaaactagagaa-ccagggaagtcagtagtgtggcacagtttaaatccaaaggcctt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2041408 102 + 5179401 ttcacatgattttagaggctgggaagtcccatgacagacaacctgcaaattagagaacccagggaagccagtagtgtggcacagtttaagtccaaaggcctt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7743920 101 - 21726897 ttcacatgattttggaggctgggaagtcccatgacagaccacctgcaaactagagaa-ccagggaagccagtagtgtggcacagtttaagtccaaaggcctt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112555677 101 + 204313951 ttcacatgattatggaggctcgaaaggcccatgggagaccatctgcaaactggagaa-cctgggaagccagtagtgtggctcagtttaaatccaaaggcctt i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107830v1 366671 99 - 1393929 ttcacatgattatggaggctcgaaaggcccatgggagactatctgcaaactggagaa-cctgggaagccagt--tctggctcagtttaaatccaaaggcctt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1439027 101 - 15889662 ttcacatgattatggaggcttggaaggcccatgggagaccatctgcaaactggagaa-cctgggaagccagtagtgtggctcagtttaaatccaaaggcctc i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14333715 163 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1260067 1238 - 11655695 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e saiBol1.JH378106 45003376 113 + 71252344 I a score=3442191.000000 s hg38.chr5_GL383530v1_alt 68764 372 + 101241 agaaccaaggaagctgatg--gtggaactc----tcagcctaaggccaaaagcctgagaacctaaggggcagcttgtttaagtcttacagttcaaaggtcagacagcctggagttctgatgtccacgaaaagggaagaagagtgttccagtgttccagctctaggagagagaagaaatggcctcttttctgccttttttgttctacctgagccccgagcc-agctgcagggtt-ctacccacatcaagagtggtcttccccactcacgccactgacccacttaccagtctcct---ctagaaccaccttcacagacaaacctagaaacaatgcttcaccagttctcctgctattgttaaatccagtcaagtagacatc-tgaaa s panTro5.chr5 20302682 372 + 181907262 agaaccaaggaagctgatg--gtggaactc----tcagcctaaggccaaaagcctgagaacctaaggggcagcttgtttaagtcttacagttcaaaggtcagacagcctggagttctgatgtccaagaacagggaagaagagtgttccagtgttccagctctaggagagagaagaaatggcctcttttctgccttttttgttctacctgagccccgagcc-agttgcagggtt-ctacccacatcaagagtggtcttccccactcacgccactgacccacttaccagtctcct---ctagaaccaccttcacagacaaacctagaaacaatgcttcaccagttctcctgctattgttaaatccagtcaagtagacatc-tgaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20315000 372 + 183735486 agaaccaaggaagctgatg--gtggaactc----tcagcctaaggccaaaagcctgagaacctaaggggcagcttgtttaagtcttacagttcaaaggtcagacagcctggagttctgatgtccaagaacagggaagaagagtgttccagtgttccagctctaggagagagaagaaatggcctcttttctgccttttttgttctacctgagccccgagcc-agttgcagggtt-ctacccacatcaagagtggtcttccccactcacgccactgacccacttaccagtctcct---ctagaaccaccttcacagacaaacctagaaagaatgcttcaccagttctcctgctattgttaaatccagtcaagtagacatc-tgaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4801664 374 - 13748885 agaaccaaggaagctgatg--gtggaactc----tcagcctaaggccaaaagcctgagaacctaaggggcagcttgtttaagtcttacagttcaaaggtcagacagcctggggttctgatgtccaagaatagggaagaagagtgttccagtgttccagctctaggagagagaagaaatgggctcttttctgccttttttgttctacctgagcccccagccaagttgcagggtt-ctacccacatcaagagtggtcttccccactcatgccactgacccacttaccagtctcct---ctagaaccaccttcacagacaaacctagaaataatgcttcaccagttctccagctattgttaaatccagtcaagtagacatcttgaaa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53833419 372 - 163208435 agaaccaaggaagctgatg--gtggaactc----tcagcctaaggccaaaagcctgagaacctaaggggcagcttgtttaagtcttatagttcaaaggtcagacagcctggagttctgatgtccaagaacagggaagaagagtgttccagtgttccagctctaggagagagaagaaatggcctcttctctgccgtttttgttctacctgagcccccagcc-agttggagggtt-ctacccacatcaggagtggtcttccccactcacgccactgacccacttaccagtctcct---ctagaaccaccttcacagacaaacctagaaataatgcttcactagttctccagctattgttaaatccagtcaagtagacatc-tgaaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87856565 371 - 180051392 agaaccaaggaagctgatggtgtgtaactc----tcagctcaaggcc-aaagcctgagaacttaaggggcagcttgtttaagtcttacagttcaaaggtcagacagcctggagttctgatgtccaagaatagggaagaagagtgttccagtgttcaagttctaggagagagaagaaatggcctct--tctgccttttttgttctacctgagtccccagcc-agtcggatggtg-ctacccacatcgagagtggtcttccccactcaggccactgacccacataccagtctcct---ctggaaccaccttcacagacaaacctttaaataatgctttaccagttctccagctattgttaaattcagtcaagtagacacc-tgaag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87960993 371 - 181584905 agaaccaaggaagctgatggtgtgtaactc----tcagctcaaggcc-aaagcctgagaacttaaggggcagcttgtttaagtcttacagttcaaaggtcagacagcctggagttctgatgtccaagaatagggaagaagagtgttccagtgttcaagttctaggagagagaagaaatggcctct--tctgccttttttgttctacctgagtccccagcc-agttggatggtg-ctacccacatcgagagtggtcttccccactcaggccactgacccacataccagtctcct---ctggaaccaccttcacagacaaacctttaaataatgctttaccagttctccagctattgttaaattcagtcaagtagacacc-tgaag i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1188496 371 - 8785636 agaaccaaggaagctgatggtgtgtaactc----tcagctcaaggcc-aaagcctgagaacttaaggggcagcttgtttaagtcttacagttcaaaggtcagacagcctggagttctgatgtccaagaatagggaagaagagtgttccagtgttcaagttctaggagagagaagaaatggcctct--tctgccttttttgttctacctgagtccccagcc-agttggatggtg-ctacccacatcgagagtggtcttccccactcaggccactgacccacataccagtctcct---ctggaaccaccttcacagacaaacctttaaataatgctttaccagttctccaactattgttaaattcagtcaagtagacacc-tgaag i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1652122 371 + 27333823 agaaccaaggaagctgatggtgtgtaactc----tcagctcaaggcc-aaaggctgagaacttaaggggcagcttgtttaagtcttacagttcaaaggtcagacagcctggagttctgatgtccaagaatagggaagaagagtgttccagtgttcaagttctaggagagagaagaaatggcctct--tctgccttttttgttctacctgagtccccagcc-agttggatggtg-ctacccacatcgagagtggtcttccccactcaggccactgacccacataccagtctcct---ctggaaccaccttcacagacaaacctttacataatgctttaccagttctccagctattgttaaattcagtcaagtagacacc-tgaag i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1921774 369 - 91010382 agaaccaaggaagctgatggtgtgtaactc----tcagcccaaggcc-aaagcctgagaacttaaggtgcagcttgtttaagtcttacagttcaaaggtcagacagcctggagttctga--tccaagaatagggaagaagagtgtttcagtgttcaagctctaggagagagaagaaatggcctct--tctgccttttttgttctacctgagcccccagcc-agttggatggtg-ctacccacattgagagtggtcttccccactcaggccactgacccacataccagtctcct---ctggaaccaccttcacaggcaaacctataaataatgcttcaccagttctccagctattgttaaagtcagtcaagtagacacc-tgaag i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2041510 371 + 5179401 agaaccaaggaagctgatggtgtgtaactc----tcagctcaaggcc-aaagcctgagaacttaaggggcagcttgtttaagtcttacagttcaaaggtcagacagcctggagttctgatgtccaagaatagggaagaagagtgttccagtgttcaagttctaggagagagaagaaatggcctct--tctgccttttttgttctacctgagtccccagcc-agttggatggtg-ctacccacatcgagagtggtcttccccactcaggccactgacccacataccagtctcct---ctggaaccaccttcacagacaaacctttacataatgctttaccagttctccagctattgttaaattcagtcaagtagacacc-tgaag i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7744021 371 - 21726897 agaaccaaggaagctgatggtgtgtaactc----tcagcccaaggcc-aaagcctgagaacttaaggggcagcttgtttaagtcttacagttcaaaggtcagacagcctggagttctgatgtccaagaatagggaagaagagtgttccagtgttcaagctctaggaaagagaagaaatggcctct--tctgccttttttgttctacctgagcccccagcc-tgttggatggtg-ctacccacatcgagagtggtcttccccactcaggccactgacccacataccagtctcct---ctggaaccaccttcacagacaaacctataaataatgctttaccagttctccagctattgttaaattcagtcaagtagacacc-tgaag i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112555778 372 + 204313951 agaacaaagaaagctgatg--gtgtaactctcattcagcccaaggccaaaagcctgaaaacctaaggggcagcttgtgtcagtcttacagttcaaaggtcaggcagcctggagttctgatgtctaagaaccgagaaaaagagtgttct--------ggctctaggagagagaagaaattgcctcttctctgccttttttgttccatctgagcccccagcc-agttggatggtgtccatccacattgagagtggtctttcgcactctggccactgacccacataccagtctcctcctctggaactacccttacagacaaacctagagataatgctttaccatttctctagctactgttgaatctagtcaagtagatacc-taaag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45003489 371 + 71252344 agaacaaaggaatctgatg--gtgtaactctcactcagcccaaggccaaaagcctgaaaacct-atgggcagctcgtgtcagtcttacagttcaaaggtcagacagcctagagttctaatgtctaagaacagagaaaaagagtgttcc--------agctctaggagagagaagaaattgcctcttctctgccttttttgttccatttgagcacccagcc-agttggatggtgcccatccacattgagagtggtcttccccactctggccactgacccacataccagtctccttctctggaactacccttacagacaaacctagagataatgctataccagttctctagctattgttgaatctagtcaagtagatacc-tgaag i saiBol1.JH378106 I 113 C 0 s cebCap1.NW_016107830v1 366770 361 - 1393929 agaacaaaggaagctgatt--gtgtaactctcactcagcccaaggccaaaagcctgaaaacctaagggaca-cttgtgccggtcttacagttcaaaggtcagacagcctggagtt----------agaacagggaaaaagagggttcc--------agctctaggagagagaagaaattgcctcttctctgccttttttgttccatctgagcccccagcc-agttggatggtgcccatccacattgagagtggtcttccccactctggccactgacccacataccagtctcctcccctggaactacccttacagacaaacctagagataatgctttaccagttctctagctattgttgaatctggtcaagtggatatc-tgaag i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1439128 371 - 15889662 agaataaaggaagctgat---gtgtaactctcactcagcccaaggccaaaagcctgaaaacctaaggggccgcttgtgttggtcttacagttcaaaggccagacagcctggagttctgaagtctaagaacacggaaaaaaagtgttcc--------agctctaggagagagaagaaattgcctcttctctgccttttttgttccatccgagcccccagcc-agttggatggtacccatccacattgagagcggtcttccccactctggccactgacccatataccagtctcctcctctggaactaccgttacagacaaacctagagataatgctttaccagttctctagctattgttgaatctagtcaagtagatacc-tgaag i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14333715 163 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1260067 1238 - 11655695 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I a score=801059.000000 s hg38.chr5_GL383530v1_alt 69136 73 + 101241 ttaattatcacagaaatgtttgaaatgtgaatcaaatttctcatccccataccagatgttagaacacagagta s panTro5.chr5 20303054 73 + 181907262 ttaattatcacagaaatgtttgaaatgtgaatcaaatttctcatccccataccagatgttagaacacagagta i panTro5.chr5 C 0 C 0 s panPan2.chr5 20315372 73 + 183735486 ttaattatcacagaaatgtttgaaatgtgaatcaaatttctcatccccataccagatgttagaacacagagta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4802038 73 - 13748885 ttaattatcacaGAAATGTTTGAAATGTGTATCAGATTTCTCATCCCCATACCAGATGTTAGAACACAGAGTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53833791 73 - 163208435 ttaattatcacagaaatgtttgaaatgtgcatcagatttctcatccccataccagatgttagaatacagagta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87856936 73 - 180051392 ttaatcatcacagaaatgtttgaaatgtgaatcagatttctcatccccataccagatgttagaacacagagta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87961364 73 - 181584905 ttaatcatcacagaaatgtttgaaatgtgaatcagatttctcatccccataccagatgttagaacacagagta i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1188867 73 - 8785636 ttaatcatcacagaaatgtttgaaatgtgaatcagatttctcatccccataccagatgttagaatacagagta i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1652493 73 + 27333823 ttaatcatcacagaaatgtttgaaatgtgaatcagatttctcatccccataccagatgttagaacacagagta i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1922143 73 - 91010382 ttaatcatcacagaaatgtttgaaatgtgaatcagatttctcatccccataccagacgttagaacacagagta i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2041881 73 + 5179401 ttaatcatcacagaaatgtttgaaatgtgaatcagatttctcatccccataccagatgttagaacacagagta i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7744392 73 - 21726897 ttaatcatcacagaaatgtttgaaatgtgaatcagatttctcatccccataccagatgttagaacacagagta i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112556150 72 + 204313951 ttaattatcacagaaatgttt-gaatgtgaatcagatttctcatccctataccagatgttagagcacaGAGTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45003860 62 + 71252344 ttaattatcacaGAAATGTTTGGAATGTGAATCAGATTTCTCATCCCCATACCAGATGTTAG----------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 367131 73 - 1393929 ttaattatcacagaaatgtttggaatgtgaatcaaatttctcatccccataccagatgttaaaacacagagta i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1439499 73 - 15889662 ttaattatcacagaaatgtttgaaatgtgtatcagatttcttatccccataccagatgttagaacacagagta i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14333878 72 + 91889043 ttacctacca-aggaatattagaaatatgaatcaaatttttcatcctaatataggatgatagaactcaaaata i canFam3.chr3 I 163 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1260067 1238 - 11655695 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I a score=990420.000000 s hg38.chr5_GL383530v1_alt 69209 106 + 101241 gcaatacctt--------TTTCAAGGAAATTAAAGAAAAATAAA-----------TAAGAAGAAACTTCCTATTTATGGTTTCTGAAGAGTGAAACTGGGATAGGTGGTGGAG-AAAAAACTTTTT s panTro5.chr5 20303127 106 + 181907262 gcaatacctt--------tttcaagaaaattaaagaaaaataaA-----------TAAGAAGAAACTTCCTATTTATGGTTTCTGAAGAGTGAAACTGGGATAGGTGGTGGAG-AAAAAACTTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20315445 106 + 183735486 gcaatacctt--------tttcaagaaaattaaagaaaaataaA-----------TAAGAAGAAACTTCCTATTTATAGTTTCTGAAGAGTGAAACTGGGATAGGTGGTGGAG-AAAAAACTTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4802111 107 - 13748885 GCAATACCTT--------TTTCAAGAAAATTAAAGAAAAATAAA-----------TAAGAAGAAACTTCCTATTTATGGTTTCTGAAGAGTGAAACTGGGATAGGTGGTGGAGAAAAAAACTTTTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53833864 105 - 163208435 gcaatacctt--------TTTCAAGAAAATTAAAGAAAAATAAA-----------TAAGAAGAAACTTCCTATTTATGGTTTCTGAAGAGTGAAACTGGGATAGGTGGTGGAG--AAAAACTTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87857009 109 - 180051392 tcaatatctt----taaCTATCAAGAAAATTAAAGAAAAATAAA-----------TAAGAAGAAACTTCCTATTTATGGTTTCTGAAGAGTGAAACTGGGATAGGTGGTGGAG--AAAAAAACTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87961437 109 - 181584905 tcaatatctt----taaCTATCAAGAAAATTAAAGAAAAATAAA-----------TAAGAAGAAACTTCCTATTTATGGTTTCTGAAGAGTGAAACTGGGATAGGTGGTGGAG--AAAAAAACTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1188940 109 - 8785636 tcaatatctt----taaCTATCAAGAAAATTAAAGAAAAATAAA-----------TAAGAAGAAACTTCCTATTTATGGTTTCTGAAGAGTGAAACTGGGATAGGTGGTGGAG--AAAAAAACTTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1652566 109 + 27333823 tcaatatctt----taaCTATCAAGAAAATTAAAGAAAAATAAA-----------TAAGAAGAAACTTCCTATTTATGGTTTCTGAAGAGTGAAACTGGGATAGGTGGTGGAG--AAAAAAACTTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1922216 109 - 91010382 tcaatatctt----taaCTATCAAGAAAATTAAAGAAAAATAAA-----------TAAGAAGAAACTTCCTATTTATGGTTTCTGAAGAGTGAAACTGGGATAGGTGGTGGAG--AAAAAACCTTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2041954 109 + 5179401 tcaatatctt----taaCTATCAAGAAAATTAAAGAAAAATAAA-----------TAAGAAGAAACTTCCTATTTATGGTTTCTGAAGAGTGAAACTGGGATAGGTGGTGGAG--AAAAAAACTTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7744465 109 - 21726897 tcaatatctt----taaCTATCAAGAAAATTAAAGAAAAATAAA-----------TAAGAAGAAACTTCCTATTTATGGTTTCTGAAGAGTGAAACTGAGATAGGTGGTGGAG--AAAAAAATTTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112556222 102 + 204313951 TGAATATCTT--------TATCCAGAAAATTAAAGAA----AAA-----------AAATAAGAAATTTCCTATTTATGGTTTCTGAAGAGTCAAACTGAGCTAGGTGGTGGAG-AAAAAACTTTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45003922 71 + 71252344 -----------------------------------------AAA-----------AAATAAGAAACTTCCTATTTATGGTTTCTGAAGAATAAAACTGAGATAGGTGGTGGAG---AAAACTTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 367204 102 - 1393929 tgaatatctt--------taTCCAGAAAATTAAAGAA----AAA-----------AAATAAGAAACTTCCTATTTATGGTTTCTGAAGAGTAAAACTGATATAGGTGGTGGAG-AAAAAACTTTTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1439572 101 - 15889662 taaatatctt--------taTCCAGAAAATTAAAGA-----AAA-----------AAATAAGAAACTTCCTATTTATGATTTCTGAAGAGTAAAACTGAGATAGGTGGTGGAG-AAAAAACTTTTT i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14333950 122 + 91889043 gcagtattttcCACTAATGATCAGAAAAATTAGGGAACAACAAAGTAATAACAATAAGAAAGAAACTTCCTATTCACAATTTCTGGAAAAGGAAACTAG--TAGCTGGTGGAG--AGGAAGACTTT i canFam3.chr3 C 0 I 443 s dasNov3.JH570378 1261305 91 - 11655695 GCAATAGCTA--------CCAGAAGAAAATTAGAAGAAAA-AAA-----------AAAGAAGGAACTTCCTATTTATGGTTTCTGGGGTATGAAACCTGAGTGAGTGGTGG--------------- i dasNov3.JH570378 I 1238 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I a score=1058771.000000 s hg38.chr5_GL383530v1_alt 69315 121 + 101241 Tggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcggatggatcccttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctcct s panTro5.chr5 20303233 121 + 181907262 Tggccaggtgcagtggctcacgcctgtaatcccagcattttgggaggccgaggcgggtggatcccttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctcct i panTro5.chr5 C 0 C 0 s panPan2.chr5 20315551 121 + 183735486 Tggccaggtgcagtggctcacgcctgtaatcccagcattttgggaggctgaggcgggtggatcccttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctcct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4802218 121 - 13748885 Tggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcccttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctact i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53833969 121 - 163208435 Tggccaggtgcagtggctcacgcctgtaatcccagcactttggaaggccgaggcgggtggatcccttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctact i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87857118 121 - 180051392 Tggctgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcccttgaggtcaggagtttgagaccagcctggccaacttggtgaaaccccatctctact i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87961546 121 - 181584905 Tggccgggtgcagtggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcccttgaggtcaggagtttgagaccagcctggccaacttggtgaaaccccatctctact i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1189049 121 - 8785636 Tggccgggtgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcaggtggatcccttgaggtcaggagtttgagaccagcctggccaacttggtgaaaccccatctctact i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1652675 121 + 27333823 Tggccaggtgcagtggctcacgactgtaatcccagcactttgggaggccgaggcaggtggatcctttgaggtcaggagtttgagaccagtctggccaacttggtgaaaccccatctctact i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1922325 121 - 91010382 Tggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtgaatcccttgaagtcaggagtttgaaaccagcctggccaacatggtgaaaccccatctctacg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2042063 121 + 5179401 Tggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcctttgaggtcaggagtttgagaccagcctggccaacttggtgaaaccccatctctact i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7744574 121 - 21726897 Tggccaggtgcagtggctcacacctgtaatcccagcactttgggaggccgaggcaggtggatcccttgaggtcaggagtttgggaccagcctggccaacatggtgaaaccccatctctact i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112556324 101 + 204313951 Tggccaggtgcagtggctcacgcctgtaatcccaacactttgggaggccaaggcgggaggatcatttgaggtcagaagtttgagaacagcctg--------------------tctctact i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45003993 101 + 71252344 Tggccaggcacagtggctcccgcctataatcccagtgctttgggaggccaaggcaggagaatcacttgaggtcagaagtttgagaacagcctg--------------------tctctact i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 367306 101 - 1393929 Tggtcaggcgcagtggctcacgcctgtaaacccagcactttgggaggccaaggtgggaagatcacttgaggtcagaagtttgagaacagtctg--------------------tctctact i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1439673 101 - 15889662 Tggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggccaaggcgggaggatcacttgaggtcagaagtttgagaacagcctg--------------------tctctact i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1261396 33 - 11655695 ----------------------------------------TGGGAGG--------AATGTTTCCTTT----TCA-----TTG-------------------------------TATGTCCT i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I a score=1365530.000000 s hg38.chr5_GL383530v1_alt 69436 154 + 101241 aaaaatacaaaaactagccaggcatgatggcgggcacctataatcccagctactcaggacgctaaggcaggagaattgcctgaacctgggaggcagaggctgcagtgagccaagatagcaccaatgtgctccagcctgggcaacaa----agcgagac s panTro5.chr5 20303354 154 + 181907262 aaaaatacaaaaactagccaggcatgatggcgggcgcctataatcccagctactcaggaggctgaggcaggagaattgcctgaacctgggaggcagaggctgcggtgagccaagatagcgccaatgtgatccagcctgggcaacaa----agcgagac i panTro5.chr5 C 0 C 0 s panPan2.chr5 20315672 154 + 183735486 aaaaatacaaaaactagccaggcatgatggcgggcgcctataatcccagctactcaggaggctgaggcaggagaattgcctgaacctgggaggcagaggctgcggtgagccaagatagcgccaatgtgctccagcctgggcaacaa----agcgagac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4802339 154 - 13748885 aaaaatacaaaaactagccaggcatgatggcgggcgcctataatcccagctactcaggaagctgaggcaggagaattgcctgaacctgggaggcagaggctgcagtgagccaagatagtgccaatgtgctccagcctgggcaacaa----agcgagac i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53834090 154 - 163208435 aaaaatacaaaaactagccagccgtgatggcgggcgcctataatcccagctactcaggaggctgaggcaggagaattgcctgaacctgggaggcagagtttgcagtgagccaagatagagccaatgtgctccagcctgggcaacaa----agtgagac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87857239 154 - 180051392 aaaaatataaaaattagccaggcatgatggtgggtgcctataatcccagctactcaggaggctgaggcaggagaattgcctgaacccgggaggcagaggctgcagtgagccaagatagcaccagtgcacttcagcctaggcaacag----agtgagac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87961667 154 - 181584905 aaaaatataaaaattagccaggcatgatggtgggtgcctataatcccagctactcaggaggctgaggcaggagaattgcctgaacccgggaggcagaggctgcagtgagccaagatagcgccagtgcacttcagcctaggcaacag----agtgagac i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1189170 125 - 8785636 aaaaatataaaaattagccaggcatgatggtgggtgcctataatcccagctactcaggaggctgaggcaggag---------------------------tgcggtgagct--gattgcgccagtgcacttcagcctaggcaacag----agtgagac i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1652796 154 + 27333823 aaaaatataaaaattagccaggcatgatggtgggtgcctataatcccagctactcaggaggctgaggcaggagaattgcctgaacccgggaggcagaggctgcagtgagccaagatagcaccagtgcacttcagcctgggcaacag----agtgagac i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1922446 154 - 91010382 aaaaatacaaaaattagccagccatgatcgtgggtgcctataatcccagctactcaggaggctgaggcagaagaattgcctgaacccgggaggcagaggctgcagtgagccaagatcgggccaatgcactccagcctgggcaacag----agcgagac i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2042184 154 + 5179401 aaaaatataaaaattagccaggcatgatggtgggtacctataatcccagctactcaggaggctgaggcaggagaattgcctgaacccgggaggcagaggctgcagtgagccaagatagcaccagtgcacttcagcctgggcaacag----agtgagac i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7744695 150 - 21726897 aaaaatacaaaaattagccaggcatgatggtgggtgcctataatcccagctactcaggaggctgaggc---agaattgcctgaacccgagaggcagaagctgcagtgagccaagatagcaccaatgcactccagcctgggcaacaa----agcgaga- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112556425 158 + 204313951 aaaaatataaaaattaaccaggcgtgatggtgggcacctgtaatctcagctactcatgagaccgaggcagaagaattgcctaaacccaagaggcagaggctgtactgggccaagatagcaccaatgcactccagcatggacaacagagcaagcaagac i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45004094 158 + 71252344 aaaaatacaaaaatttaccaggcgtgatggtgggcacctgtaatctcagctactcctgagactgaggcaggagaattgcctaaacccaggaggcagaggctgcagtgagccaagacagcaccaatgcattccagcctgggcaacggagcaagcaagac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 367407 158 - 1393929 aaaaatacaaaagttaaccaggagtgatggtgggtgcgtgtaatctcagctacttatgagactgaggcaggagaattgcctaaacccaggaggcagaggctgcagttagccaacatagcaccaatgcactccagcctgggcaacggagcaagcaagac i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1439774 143 - 15889662 a---------------actaggcatgattgtgggcacctgtaatctcagcttctcatgagactgaggcaggagaattgcctaaacccaggaggcagaggctgcagtgagccaagatagcaccaatgcactccagcctgggcaacagagcaagcaagac i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1261429 0 - 11655695 C e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I a score=710525.000000 s hg38.chr5_GL383530v1_alt 69590 112 + 101241 tctgtctc--------------aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCCACTTTTCCTTTACATTTTATCCCTTTTGTACTT-AAAAA--------ATACACTCA---TCCCTATAATTTTTAAATTT s panTro5.chr5 20303508 106 + 181907262 tctgtctc--------------aaaaaaaaaaaaacaaaaaacagaaaaaaa------CACTTTTCCTTTACATTTTATCCCTTTTGTACTT-AAAAA--------ATACACTCA---TCCCTATAATTTTTAAATTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20315826 112 + 183735486 tctgtctc--------------aaaaacaaaaaacaaaaaacagaaaacaaaaaaGCCCACTTTTCCTTTACATTTTATCCCTTTTGTACTT-AAAAA--------ATACACTCA---TCCCTATAATTTTTAAATTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4802493 98 - 13748885 tctatctc--------------aaaaaaaaaaaccaaaaaaa-----------------aCTTTTCCTTTACATTGTATCCCTTTTGTATTT-AAAAAAT-----TATACACTCA---TCCCTATAATTTTTAAATTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53834244 100 - 163208435 tctgtctc--------------aaaaaaaaacaaaaaaaaccaaaaa------------aCTTTTCCTTTACATTTTATCCCTTTTGTACTT-AAAAA--------ATATACTCA---TCCCTATAATTTTAAAATTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87857393 101 - 180051392 tctgtctc----------aaaaaaaaaaaaaaaagaaaaaaaaa------------------TTTCCTTTACATTTTATCCCTTTTGTACTT-AAAAA--------ATGCACTCATTATCCCTATAATTTTAAAATTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87961821 98 - 181584905 tctgtctc-------------aaaaaaaaaaaaagaaaaaaaaa------------------TTTCCTTTACATTTTATCCCTTTTGTACTT-AAAAA--------ATGCACTCATTATCCCTATAATTTTAAAATTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1189295 98 - 8785636 tctgtctc-------------aaaaaaaaaaaaagaaaaaaaaa------------------TTTCCTTTACATTTTATCCCTTTTGTACTT-AAAAA--------ATGCACTCATTTTCCCTATAATTTTAAAATTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1652950 97 + 27333823 cctgtctc--------------aaaaaaaaaaaagaaaaaaaaa------------------TTTCCTTTACATTTTATCTCTTTTGTACTT-AAAAA--------ATGCACTCATTATCCCTATAATTTTAAAATTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1922600 96 - 91010382 tctgtctc--------------aaaaaaaacaag--aaaaaaaa------------------TTTCCTTTACATTTTATCCCTTTTGTACTTAAAAAA--------ATGCACTCATTATCCCTATAATTTAAAAATTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2042338 97 + 5179401 cctgtctc--------------aaaaaaaaaaagaaaaaaaaaa------------------TTTCCTTTACATTTTATCTCTTTTGTACTT-AAAAA--------ATGCACTCATTATCCCTATAATTTTAAAATTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7744845 100 - 21726897 -ctgtctc----------aaaaaaaaaagaaaaagaaaaaaaaa------------------TTTCCTTTACATTTTATCCCTTTTGTACTT-AAAAA--------ATGCACTCATTATTCCTATAATTTTAAAATTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112556583 117 + 204313951 tcagtttcaaaaaaaaaaaaaaaaaaaaaaaaaaagaaAGAAAGAAAAGCT-----------TTTCCTTTACAGTTTATCCCTTTTGTACTT-AAAAA--------ATAC-CTCACTGTTTCCATAATTTTTAAATTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45004252 109 + 71252344 tcagtctc---------aaaaaaaaaaaaaagaaagaaaaaaagaaaAGAT-----------TTTCCTTTACATTTTATCCCTTTTGTACTT-AAAAA--------ATACACTCATTATTCCTATAATTTTTAAATTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 367565 104 - 1393929 tcagtctc--------------aaaaaaaaaaagaaaaatagagaaaaaCT-----------TTTCCTTTACATTTTATCCCTTTTGTACTT-AAAAA--------ATACACTCATTATCCCTATAATTTTTAAATTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1439917 94 - 15889662 tcagtctc--------------aaaaaaaaagaa----------aaaaGTT-----------TTTCTTTTACATTTTATCCCTTTTGTACTT-AAAAA--------ACACACTCATTATCCCTATGATTTTTAAATTT i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1261429 54 - 11655695 -------------------------------------------------------------------TTTG----------------TACTT-AAAAAACAAACATATAAATGCATTTTCTCtaaaatttataaaatt i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I a score=660426.000000 s hg38.chr5_GL383530v1_alt 69702 90 + 101241 ------AAATCATAACAAAAAGGTAGTATATTGTATTATCATACtgcttttcaaactttaatgtgcctatgaatcaatgaaggctcttgttaaaat s panTro5.chr5 20303614 90 + 181907262 ------AAATCATAACAAAAAGGTAGTATATTGTATTATCATagtgcttttcaaactttaatgtgcctatgaatcaatgaaggctcttgttaaaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20315938 90 + 183735486 ------AAATCATAACAAAAAGGTAGTATATTGTATTATCATagtgcttttcaaactttaatgtgcctatgaatcaatgaaggctcttgttaaaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4802591 89 - 13748885 ------AAATCATAACAAAAAGGTAGTATATTGTATTATCATagtgcttttcaaactttaatgc-cctatgaatcaatgaaggctcttgttaaaat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53834344 90 - 163208435 ------AAATCATAACAAAAAGATAGTATATTGTCTTATCATagtgcatttcaaactttaatgtgcctatgaatcaatgaaggttcttgttaaaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87857494 87 - 180051392 ------AA---ATAACAAAAGAGTAGTATATTGTATTATCATagtacttttcaaactttaatatgcctctgaatcagtgaaggctgttgttaaaat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87961919 87 - 181584905 ------AA---ATAACAAAAGAGTAGTATATTGTATTATCATagtacttttcaaactttaatatgcctctgaatcagtgaaggctgttgttaaaat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1189393 87 - 8785636 ------AA---ATAACAAAAGAGTAGTATATTGTATTATCATagtacttttcaaactttaatatgcctctgaatcagtgaaggctgttgttaaaat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1653047 87 + 27333823 ------AA---ATAACAAAAGAGTAGTATATTGTATTATCATagtgcttttcaaactttaatatgcctctgaatcagtgaaggctgttgttaaaat i cerAty1.NW_012002401v1 C 0 I 388 s chlSab2.chr4 1922696 87 - 91010382 ------AA---ATAACAAAAGAGTAGTCTATTGTATTATCATagtgcttttcaaactttaatatgcctctgaatcagtgaaggctgttgttaaaat i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2042435 87 + 5179401 ------AA---ATAACAAAAGAGTAGTATATTGTATTATCATagtgcttttcaaactttaatatgcctctgaatcagtgaaggctgttgttaaaat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7744945 85 - 21726897 ------AA---ATAAC--AAGAGTAGTATATTGTATTATCATagtgcttttcaaacttcaatatgcctctgaatcagtgaaggctgttgttaaaat i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 45004361 50 + 71252344 -----------ATAACAAAAGAGTAGTATATTGTATTATCATAGTGTTTTTCAAACTTT-----------------------------------at i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 367669 85 - 1393929 -----------ATAACAAAAGAGTAGTATATTGTATTATCGTagtatttttcaaactttaatgtgcctgcgaaccaacgaaggatctggttaaaat i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1440011 80 - 15889662 -----------ATAACAAAAGAGTAGTA-----TATTATCTTagtgtttttcaaactttaatgtgcctgtgaaccaatgaaggatctggttaaaat i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1261483 85 - 11655695 aaatttaa---ataataaaGGAATAGCATATGG--------cagtacttcttaaactttaatatgcatataaatcacatgaggatcttgacaaaat i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e calJac3.chr2 112556700 0 + 204313951 C a score=229402.000000 s hg38.chr5_GL383530v1_alt 69792 33 + 101241 acatattctgattcagtcagtgttgagtgttat s panTro5.chr5 20303704 33 + 181907262 acatattctgattcagtcagtgttgagtgttat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20316028 33 + 183735486 acatattctgattcagtcagtgttgagtgttat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4802680 33 - 13748885 acatattctgattcagtcagtgttgagtgttat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53834434 33 - 163208435 acgtattctgattcagtcagtgttgagtgttat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87857581 29 - 180051392 acatattctgat----tcagtgttgagtgttat i rheMac8.chr6 C 0 I 309 s macFas5.chr6 87962006 29 - 181584905 acatattctgat----tcagtgttgagtgttat i macFas5.chr6 C 0 I 308 s macNem1.NW_012011400v1 1189480 29 - 8785636 acatattctgat----tcagtgttgagtgttat i macNem1.NW_012011400v1 C 0 I 311 s chlSab2.chr4 1922783 29 - 91010382 acatattctgat----tcagtgttgggtgttat i chlSab2.chr4 C 0 I 309 s manLeu1.NW_012103732v1 2042522 29 + 5179401 acatattctgat----tcagtgttgagtgttat i manLeu1.NW_012103732v1 C 0 I 308 s colAng1.NW_012115488v1 7745030 29 - 21726897 acatattctgat----tcagtgttgagtgttat i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 45004411 33 + 71252344 acatattctgattcagtcagtcttgagtgttac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 367754 33 - 1393929 acatattctgattcagtcagtcttgagtgttac i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1440091 33 - 15889662 acatattctgattcaatcagtcttgagtgttac i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1261568 33 - 11655695 acagattttgattcagcacatctggggtgatgt i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e calJac3.chr2 112556700 0 + 204313951 C e cerAty1.NW_012002401v1 1653134 388 + 27333823 I a score=57265.000000 s hg38.chr5_GL383530v1_alt 69825 6 + 101241 ctgaga s panTro5.chr5 20303737 6 + 181907262 ctgaga i panTro5.chr5 C 0 C 0 s panPan2.chr5 20316061 6 + 183735486 ctgaga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4802713 6 - 13748885 ctgaga i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53834467 6 - 163208435 ctgaga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87857919 6 - 180051392 ctgaga i rheMac8.chr6 I 309 C 0 s macFas5.chr6 87962343 6 - 181584905 ctgaga i macFas5.chr6 I 308 C 0 s macNem1.NW_012011400v1 1189820 6 - 8785636 ctgaga i macNem1.NW_012011400v1 I 311 C 0 s cerAty1.NW_012002401v1 1653522 6 + 27333823 ctgaga i cerAty1.NW_012002401v1 I 388 C 0 s chlSab2.chr4 1923121 6 - 91010382 ctgaga i chlSab2.chr4 I 309 C 0 s manLeu1.NW_012103732v1 2042859 6 + 5179401 ctgaga i manLeu1.NW_012103732v1 I 308 C 0 s colAng1.NW_012115488v1 7745059 6 - 21726897 ctgaga i colAng1.NW_012115488v1 C 0 I 309 s saiBol1.JH378106 45004444 6 + 71252344 ctgaga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 367787 6 - 1393929 ctatga i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1440124 6 - 15889662 ctgaga i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1261601 6 - 11655695 ccacga i dasNov3.JH570378 C 0 I 2 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e calJac3.chr2 112556700 0 + 204313951 C a score=104724.000000 s hg38.chr5_GL383530v1_alt 69831 10 + 101241 ctgcatttct s panTro5.chr5 20303743 10 + 181907262 ctgcatttct i panTro5.chr5 C 0 C 0 s panPan2.chr5 20316067 10 + 183735486 ctgcatttct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4802719 10 - 13748885 ctgcatttct i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53834473 10 - 163208435 ctgcatttcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87857925 10 - 180051392 ctgcatttct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87962349 10 - 181584905 ctgcatttct i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1189826 10 - 8785636 ctgcatttct i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1653528 10 + 27333823 ctgcatttct i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1923127 10 - 91010382 ctgcatttct i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2042865 10 + 5179401 ctgcatttct i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7745374 10 - 21726897 ctgcatttct i colAng1.NW_012115488v1 I 309 C 0 s saiBol1.JH378106 45004450 10 + 71252344 ctacatttct i saiBol1.JH378106 C 0 I 5169 s cebCap1.NW_016107830v1 367793 10 - 1393929 ctacatttct i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1440130 10 - 15889662 ctacatttct i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1261609 10 - 11655695 ccgcatttct i dasNov3.JH570378 I 2 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e calJac3.chr2 112556700 0 + 204313951 C a score=845883.000000 s hg38.chr5_GL383530v1_alt 69841 101 + 101241 aacaagctcctatgatatgtggatgttgcttgtcctagaaccacactttgactagcaaagGTGTAC----AAGTTCAAAGAAGAGTGCAGCATTCTGTCTcagca s panTro5.chr5 20303753 101 + 181907262 aacaagctcctatgatatgtggatgttgcttgtcctagaaccacactttgagtagcaaagGTGTAC----AAGTTCAAGGAAGAGTGCAGCATTCTGTCTcagca i panTro5.chr5 C 0 C 0 s panPan2.chr5 20316077 101 + 183735486 aacaagctcctatgatatgtggatgttgcttgtcctagaaccacactttgagtagcaaagGTGTAC----AAGTTCAAGGAAGAGTGCAGCATTCTGTCTcagca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4802729 101 - 13748885 aacaagctcctatgatatgtggatgttgcttgtcctacaaccacactttgagtagcaaagGTGTAC----AAGTTCAAGGAAGAGTGCAGCATTCTGTCTcagca i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53834483 101 - 163208435 aacaagctcctgtgatatgtggatgttgcttgtcctagaaccacactttgaataacaaagGTGTAA----AAGTTCAAGGAAGACTGTAGCATTCTGTCTcagca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87857935 101 - 180051392 aacaagctcctatgatatgtggatgttgcttgtcctagaaccacagtttgagtaacaaagGTGTAC----AAATTCAAGGAAGGGTGCAGCATTCTGTCTcagca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87962359 101 - 181584905 aacaagctcctatgatatgtggatgttgcttgtcctagaaccacagtttgagtaacaaagGTGTAC----AAATTCAAGGAAGGGTGCAGCATTCTGTCTcagca i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1189836 101 - 8785636 aacaagctcctatgatatgtggatgttgcttgtcctagaaccacagtttgagtaacaaagGTGTAC----AAATTCAAGGAAGGGTGCAGCATTCTGTCTcagca i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1653538 101 + 27333823 aacaagctcctatgatatgtgcatgttgcttgtcctagaaccacagtttgagtaacaaagGTGTAC----AAATTCAAGGAAGGGTGCAGCATTCTGTCTcagca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1923137 101 - 91010382 aacaagctcctaagatatgtggatgttgcttgtcctagaaccgcagtttgagtaacaaagGTGTAC----AAATTCAAGGAAGGGTGCAGCAATCTGTCTcagca i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2042875 101 + 5179401 aacaagctcctatgatatgtggatgttgcttgtcctagaaccacagtttgagtaacaaagGTGTAC----AAATTCAAGGAAGGGTGCAGCATTCTGTCTcagca i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7745384 101 - 21726897 aacaagctcctatgatatgcggatgttgcttgtcctagaaccacagtttgagtagcaaagGTGTAC----AAGTTCAAGGAAGGGTGCAGCATTCTGTCTcagca i colAng1.NW_012115488v1 C 0 C 0 s cebCap1.NW_016107830v1 367803 101 - 1393929 aacaagctcctatgacatacgaatgttgcttgtcctagaaccacaccttgagtagcaaagGTATGT----AAGTTCAAGGAAGGATACAGCATCCTGTCTcagta i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1440140 101 - 15889662 aacaagctcctatgacatgcgaatgttgcttgtcctagaaccacacgttgagtagcaaagGTATGT----AAGTTCAAGGAAGGGTACAGCATTCTGTCTcagta i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1261619 105 - 11655695 aacaagtttgtgggataaactgaggtagcttatcttaagaccacattttgaacagcaGAGGTATACAGTAAAGTTCAATGAGAAGTGCAGTATTCTATTTCAGTA i dasNov3.JH570378 C 0 I 197 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e saiBol1.JH378106 45004460 5169 + 71252344 I e calJac3.chr2 112556700 0 + 204313951 C a score=1968654.000000 s hg38.chr5_GL383530v1_alt 69942 229 + 101241 gtcctaaagtttggtgtgcaaaagattcaccaatggagtgtgttaaaatacaatttcctcagtcccagtgcaggagattccaattcagtaggcttggaataaagttatagcatccacattttcaatgaactcTACTCTTAATTCTTCTACATGCTTACATTT-----------------------------------ACATTA--TGTTATGCTGACAAACTTTTCATAGATAAAATTTTAGAGGATGTTGTTTTGTTTATCTCT----G s panTro5.chr5 20303854 233 + 181907262 gtcctaaagtttggtgtgcaaaagattcaccagtggagggtgttaaaatacaatttcctcagtcccagtgcaggagattcgaattcagtaggcttggaataaagttatagcatccacattttcaatgaactcTACTCTTAATTCTTCTACATGCTTACATTT-----------------------------------ACATTA--TGTTATGCTGACAAACTTTTCATAGATAAAATTTTAGAGGATGTTGTTTTGTTTATCTCtaattg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20316178 233 + 183735486 gtcctaaagtttggtgtgcaaaagattcaccagtggagggtgttaaaatacaatttcctcagtcccagtgcaggagattcgaattcagtaggcttggaataaagttatagcatccacattttcaatgaactcTACTCTTAATTCTTCTACATGCTTACATTT-----------------------------------ACATTA--TGTTATGCTGACAAACTTTTCATAGATAAAATTTTAGAGGATGTTGTTTTGtttatctctaattg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4802830 233 - 13748885 gtcctaaagtttggtgtgcaaaagattcaccagtggagtgtgttaaaatacaatttcctcagtcccagtgcaggagattccagttcagtaggcttggaataaagttatagcatccacatttTCAGTGAACTCTACTCTTAATTCTTCTACATGCTTACATTT-----------------------------------ACATTA--TGTTATGCTGACAAACTTTTCATAGATAAAATTTTGGAGGATGTTGTTTTGtttatctctaattg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53834584 233 - 163208435 gtcctaaagtttggtgtgcaaaagattcaccagtggagtgtgttaaaatacaatttcctcagtcccagtgcaggagattccaattcagtaggcttggaataaagttatagcatccgcattttcaatgaactcTACTCTTAATTCTTCTACATGCTTACATTT-----------------------------------ACATTA--TGTTATGCTGACAAACTTTTCATAGATAAAATTTTGGAGGATGTTGTTTTGtttatctctaattg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87858036 233 - 180051392 gtcctaaagtttggtgtgtaaaagattcaccagtggagtgtgttaaaatacaatttcctcagtcccagtgcaggagattccaattcagtagacttggAATAAAGTTATAGCATCCATATTTTCAATGAACTCTACTCTTAATTCTTCTACATGCTTACATTT-----------------------------------ACATTA--TGTTATGCTGACAAACTTTTCATAGATAAAATTTTGGAGGATGTTGTTTTGTTTATCTCGaattg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87962460 233 - 181584905 gtcctaaagtttggtgtgtaaaagattcaccagtggagtgtgttaaaatacaatttcctcagtcccagtgcaggagattcctattcagtagacttggAATAAAGTTATAGCATCCATATTTTCAATGAACTCTACTCTTAATTCTTCTACATGCTTACATTT-----------------------------------ACATTA--TGTTATGCTGACAAACTTTTCATAGATAAAATTTTGGAGGATGTTGTTTTGTTTATCTCGaattg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1189937 233 - 8785636 gtcctaaagtttggtgtgtaaaagattcaccagtggagtgtgttaaaatacaatttcctcagtcccagtgcaggagattccaattcagtagacttggAATAAAGTTATAGCATCCATATTTTCAATGAACTCTACTCTTAATTCTTCTACATGCTTACATTT-----------------------------------ACATTA--TGTTATGCTGACAAACTTTTCATAGATAAAATTTTGGAGGATGTTGTTTTGTTTATCTCGaattg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1653639 233 + 27333823 gtcctaaagtttggtgtgtaaaagattcaccagtggagtgtgttaaaatacaatttcctcagtcccagtgcaggagattccaattcagtagacttggAATAAAGTTATAGCATCCATATTTTCAATGAACTCTACTCTTAATTCTTCTACATGCTTACATTT-----------------------------------ACATTA--TGTTATGCTGACAAACTTTTCATAGATAAAATTTTGGAGGATATTGTTTTGCTTATCTCGaattg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1923238 230 - 91010382 gtcctaaagtttggtgtgtaaaagattcaccagtggagtgtgttaaaatacaatttcctcagtcccagtgcaggagattccaattcagtagacttggAATAAAGTTATAGCATCCATATTTTCAATGAACTCTACTCTTAATTCTTCTACATGCTTACATTT-----------------------------------ACATTA--TGTTATGCTGACAAACTTTTCATAGATAAAATTTTGGAGGATGTTGTT---TTTATCTCGAACTG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2042976 233 + 5179401 gtcctaaagtttggtgtgtaaaagattcaccagtggagtgtgttaaaatacaatttcctcagtcccagtgcaggagattccaattcagtagacttggAATAAAGTTATAGCATCCATATTTTCAATGAACTCTACTCTTAATTCTTCTACATGCTTACATTT-----------------------------------ACATTA--TGTTATGCTGACAAACTTTTCATAGATAAAATTTTGGAGGATGTTGTTTTGTTTATCTCGaattg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7745485 232 - 21726897 gtcctaaagtttggtgtgtaaaagattcaccagtggagtgtgttaaaatacaatttcctcagtcccagtgcaggagattccaattcagtagacttggaataaagttatagcatccacattttcaatgaactcTACTCTTAATTCTTCTACATGCTTACATTT-----------------------------------ACATTA--TGTTATGCTGACAAATTTTTCATAGATAAAATTTTGGAGGAT-TTTTTTTGTTTATCTCGaattg i colAng1.NW_012115488v1 C 0 C 0 s cebCap1.NW_016107830v1 367904 233 - 1393929 gtcctaaagtttggtgtgcaagagattcaccagtggagagtgttaaaatacaatttcctcagtcccagtgctggagattccaattcagtaggcttgggataaagctatggtgtctgcattttcaatgaactcTACTTTTAATTCTTTTACATGCTTACATTT-----------------------------------ACATTA--TGTTATGCAGACAAACTTTTCATAGATAAAATTTTGGAGGATGTTGTTTTGtttatctctaattg i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1440241 233 - 15889662 gtcctaaagtttggtgtgcaagagattcaccagtggagagtgttaaaatacaatttcctcagtcccagtgtaggagattccaattcagtaggcttgtgataaagctatgatgtctgcattttcaatgaactcTACTCTTAATTCTTTTACGTGCTTACATTT-----------------------------------ACATTA--TGTTATGCAGACAAACTTTTCATAGATAAAATTTTAGAGGATGTTGTTTTGtttatctctaattg i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1261921 250 - 11655695 gTCCTAAAGTTTGATGTACAGCATATTC--------AGTGTAAT--------ATTTccttgatcctagtgcaggtgattccatttcagcagttttgggataaaggcttggcatctgcattttcaataagctctactcttaattctgatacacatctacaatttaggaTGTCTGTGTGAAAAGACTTAAAAGATGGAGAAATTATGTGTTATGCTAAAATACTTTTCATAGATAAAGTTCCTTGAGATATTGTTTAATCTATTTCTG---- i dasNov3.JH570378 I 197 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e saiBol1.JH378106 45004460 5169 + 71252344 I e calJac3.chr2 112556700 0 + 204313951 C a score=1530745.000000 s hg38.chr5_GL383530v1_alt 70171 204 + 101241 ACaatcattttatatgtttatcatgtacaacatgatgttttgaaatatgtataagttgtggaatggctaaattgagctaattaacatatgcattacctcacatacgcatcagtttttgtggtgagaacacttaaaatcta---tcttagcaattttcaaaacacaatacattgttattaactgtagccaccatgttgtataatagat s panTro5.chr5 20304087 204 + 181907262 acaaacattttatatgtttatcatgtacaacatgatgttttgaaatatgtataagttgtggaatggctaaattgagctaattaacatatgcattacctcacatacccatcagtttttgtggtgagaacacttaaaatcta---tcttagcaattttcaaaacacaatacattgttattaactgtcgccaccatgttgtataatagat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20316411 200 + 183735486 acaaacattttatatgtttatcatgtacaacatgatgttttgaaatatgtataagttgtggaatggctacattgagctaattaacatatgcattacctcacatacccatcagtttttgtggtgagaacacttaaa----a---tcttagcaattttcaaaacacaatacattgttattaactgtcgccaccatgttgtataatagat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4803063 204 - 13748885 acaaaaattttgtatgtttatcatgtacgacatgatgttttgaaatatgtataagttgtggaatggctaaattgagctaattaacatatgcattacctcacatacccatcagtttttgtggtgagaacacttaaaatcta---tcttagccattttcaaaacacaatacattgttattaactgtagccaccatgttgtataatagat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53834817 203 - 163208435 acaaaaattttatatgtttatcatgtataacatgatgttttgaaatatgtataagttgtggaatggctaaattgagctaattaacatatgcattacctcacatacccatcagtttttgtggtgcgaacacttaaaatcta---tcttagcaattttcaaaatacaatacattgttattaactgtag-caccatgttgtataatagat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87858269 202 - 180051392 acaaaaatttta--tgtttatcatctacaacatgatgttttgaaatatgtataaattgtggaatagctaaattgagctaattaacatgtgcattacctcacatatccatcagtttttatggtgagaacacttaaaatcta---tcttagcaattttcaaaatacaatacattgttattaactatagccaccatgttgtgtaatagat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87962693 202 - 181584905 acaaaaatttta--tgtttatcatctacaacatgatgttttgaaatatgtataaattgtggaatagctaaattgagctaattaacatgtgcattacctcacatatccatcagtttttatggtgagaacacttaaaatcta---tcttagcaattttcaaaatacaatacattgttattaactatagccaccatgttgtgtaatagat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1190170 202 - 8785636 acaaaaatttta--tgtttatcatctacaacatgatgttttgaaatatgtataaattgtggaatagctaaattgagctagttaacatgtgcattacctcacatatccatcagtttttatggtgagaacacttaaaatcta---tcttagcaattttcaaaatacaatacattgttattaactatagccaccatgttgtgtaatagat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1653872 202 + 27333823 acaaaaatttta--tgtttatcatgtacaacatgatgttttgaaatatgtataaattgtggaatggctaaattgagctaattaacatgtgcattacctcacatatccatcagtttttgtggtgagaacacttaaaatcta---tcttagcaattttcaaaatacaatacattgttattaactatagccaccatgttgtataatagat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1923468 202 - 91010382 ACAACAATTTta--tgtttatcatgtacaacatgatgttttgaaatatgtataaattgtggaatggctaaattgagctaattaacatgtgcattacctcacatatccatcagtttttgtggtgagaacacttaaaatcta---tcttagcaattttcaaaatacaatacattgttattaactatagccaccatgttgtataatagat i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2043209 202 + 5179401 acaaaaatttta--tgtttatcatgtacaacatgatgttttgaaatatgtataaattgtggaatggctaaattgagctaattaacatgtgcattacctcacatatccatcagtttttgtggtgagaacacttaaaatcta---tcttagcaattttcaaaatacaatacattgttattaactatagccaccatgttgtataatagat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7745717 204 - 21726897 acaaaacttttatgtgtttatcatgtacaacatgatgttttgaaatatgtataaattgtggaatggctaaattgagctaattaacatatgcattacctcacatatccatcagtttttgtggtgagaacacttaaaatcta---tcttagcaattttcaaaatagaatacattgttattaactatagccaccatgttgtataatagat i colAng1.NW_012115488v1 C 0 C 0 s cebCap1.NW_016107830v1 368137 204 - 1393929 acaaaaattttacatatttatcatgtacaac---atgctttgaaatatgtataaactgtggaatggctaaattgagctaattaacatatgcattacctcacatacccattagtctttgtggtgagaacactaaaaatctactgtcttagcaattttcaaaatacaatacattgttattaactatagccatcatgttatataatggat i cebCap1.NW_016107830v1 C 0 I 2 s aotNan1.NW_018506370v1 1440474 204 - 15889662 acacaaattttacatgtttatcatgtacaac---atgctttgaaatatgtataaactgtggaatggctaaattgagctaattaacatatgcattacgtcacatatccattagtttttatggtgagaacacttaaaatctactgtcttagcaattttcaaaatacagtacattgttattaactatagccatcatgttgcataatagat i aotNan1.NW_018506370v1 C 0 I 650 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1262171 0 - 11655695 C e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e saiBol1.JH378106 45004460 5169 + 71252344 I e calJac3.chr2 112556700 0 + 204313951 C a score=3530111.000000 s hg38.chr5_GL383530v1_alt 70375 535 + 101241 cccttaaacttattacttttatctaactgaaattttatatcctttgac------------------------caacatct-------ccctaatccatgagttcaactttttaagattccacatacaagtgagatcatgtggtatttgtctttctgtgtctgacttatttcacttaatacaatattccccagcttcatctatgttgttgcaaataacacaagtgtccttcatttttaaagctgaatagtattccattgtgtatatgtg--ccacattttctttatccatttacctgttgaaggacacttagcttgatttcatgtcttgggtattttgaaaaatgttgcaaagaacatgagagtgtagatatctctgtcatacactgattttattccctttgaatatatacccagtattgggattgctggatcatatggcagttctatttttaattttttgaggaatttccatactggttttcataatggctgcactaatttgcattcctgccaatagtgcacaagtgttcccttttcttcacatccttgtcaatat---ttatcttttgtc s panTro5.chr5 20304291 535 + 181907262 cccttaaacttattacttttatctaactgaaattttatatcctttgac------------------------caacatct-------ccctaatccatgagttcaactttttaagattccacatacaagtgagatcatgtggtatttgtctttctgtgtctgacttatttcacttaatacaatattccccagcttcatctatgttgttgcaaataacacaagtgtccttcatttttaaagctgaatagtattccattgtgtatatgtg--ccacattttctttattcatttacctgttgaaggacacttagcttgatttcatgtcttgggtattttgaaaaatgttgcaaagaacatgagagtgtagatatctctgtcatacactgattttattccctttgaatatatacccagtattgggattgctggatcatgtggcagttctatttttaattttttgaggaatttccatactggttttcataatggctgcactaatttacattcgtaccaatagtgcacaagtgttcccttttcttcacatccttgtcaatat---ttatcttttgtc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20316611 535 + 183735486 cccttaaacttattacttttatctaactgaaattttatatcctttgac------------------------caacatct-------ccctaatccatgagttcaactttttaagattccacatacaagtgagatcatgtggtatttgtctttctgtgtctgacttatttcacttaatacaatattccccagcttcatctatgttgttgcaaataacacaagtgtccttcatttttaaagctgaatagtattccattgtgtatatgtg--ccacattttctttattcatttacctgttgaaggacacttagcttgatttcatgtcttgggtattttgaaaaatgttgcaaagaacatgagagtgtagatatctctgtcatacactgattttattccctttgaatatatacccagtattgggattgctggatcatgtggcagttctatttttaattttttgaggaatttccatactggttttcataatggctgcactaatttacattcgtaccaatagtgcacaagtgttcccttttcttcacatccttgtcaatat---ttatcttttgtc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4803267 535 - 13748885 cccttaaacttattacttttatctaactgaaattttatatcctttgac------------------------caacatct-------ccctaatccatgagttcaactttttaagattccacatacaagtgaaatcatgtggtatttgtctttctgtgtctgacttatttcacttaatacaatattccccagcttcatctatgttgttgcaaataacacaagtgtcctttatttttgaagctgaatagtattccattgcgtatatgtg--ccacattttctttatccatttacctgttgaaggacacttagcttgatttcatgtcttgggtattttgaaaaatgttgcaaagaacatgagagtgtagatatctctgtcatacactgattttattccctttgaatatatacccagtattgggattgctggatcatatggcagttctatttttaattttttgaggaatttccatactggttttcataatggctgcactaatttacattcctaccaatagtgcacaagtgttcccttttcttcacatccttgtcaatat---ttatcttttgtc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53835020 533 - 163208435 cccttaaacttattactcttatctaactgaaattttatatcctttgac------------------------caacatct-------ccctaatccatgagttcaactttttaagattccacatacaagtgagatcatctggtatttgtctttctgtgtctgacttatttcacttaatacaatgtcccccagcctcatctatgttgttgcaaataacac--gtgtccttcatttttaaagctgaatcatattccattgtgtatatgtg--ccacattttctttatccatttacctgttgaaggacacttagcttgatttcatgtcttgggtattttgaaaaatgttgcaaagaacatgagactgtagatatctctgtcatacactgattttattccccttgaatatatacccagtattgggattgctggatcatatggcagttctatttttaattttttgaggaatttccatactggttttcataatggctgcactaatttacattcctaccaatagtgcgcaagtgttcccttttcttcacatccttatcaatat---ttatcttttgtc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87858471 538 - 180051392 cccttaaacttattacccttatctaactgaaattttatatcctttgac------------------------caacatct-------ccctaatccatgagttcaactttttatgattccacatataagtgagatcatgtggtatttgtctttctgtgtctgacgtatttcacttaatacaatatcccccagcttcatccatgttgttgcaactaacacaagtgtccttcatttttaaagctgaatagtattccattgtatatatata--ccacattttctttatccactcacctgttgaaggacacttagcttgatttcatgtcttgtgtattttgaaaactgttgcaaaggacatgagagtgtagatatctctgccatacactgattttattccctttgaatatatacccagtattgggattgctggatcatatggcagttctatttttaatgttttgaggaattcccctactggttttcaaaatggctgcagtaatttacattcctaccaatagtgcacaagtgttcccttttcttcacatccatgtcaatatttgttattttttgtc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87962895 538 - 181584905 cccttaaacttattacccttatctaactgaaattttatatcctttgac------------------------caacatct-------ccctaatccatgagttcaactttttatgattccacatataagtgagatcatgtggtatttgtctttctgtgtctgacgtatttcacttaatacaatatcccccagcttcatccatgttgttgcaactaacacaagtgtccttcatttttaaagctgaatagtattccattgtatatatata--ccacattttctttatccactcacctgttgaaggacacttagcttgatttcatgtcttgtgtattttgaaaactgttgcaaaggacatgagagtgtagatatctctgccatacactgattttattccctttgaatatatacccagtattgggattgctggatcatatggcagttctatttttaatgttttgaggaattcccctactggttttcaaaatggctgcagtaatttacattcctaccaatagtgcacaagtgttcccttttcttcacatccatgtcaatatttgttattttttgtc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1190372 538 - 8785636 cccttaaacttattacccttatctaactgaaattttatatcctttgac------------------------caacatct-------ccctaatccatgagttcaactttttatgattccacatataagtgagatcatgtggtatttgtctttctgtgtctgacgtatttcacttaatacaatatcccccagcttcatccatgttgttgcaactaacacaagtgtccttcatttttaaagctgaatagtattccattgtatatatata--ccacattttctttatccactcacctgttgaaggacacttagcttgatttcatgtcttgtgtattttgaaaactgttgcaaaggacatgagagtatagatatctctgccatacactgattttattccctttgaatatatacccagtattgggattgctggatcatatggcagttctatttttaatgttttgaggaattcccctactggttttcaaaatggctgcagtaatttacattcctaccaatagtgcacaagtgttcccttttcttcacatccatgtcaatatttgttattttttgtc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1654074 538 + 27333823 cccttaaacttattacccttatctaactgaaattttatatcctttgac------------------------caacatct-------ccctaatccatgagttcaactttttaagattccacatataagtgagatcatgtggtatttgtctttctgtgtctgacatatttcacttaatacaatatcccccagcttcatccatgttgttgcaactaacacaagtgtccttcatttttaaagctgaatagtattccattgtgtatatata--ccacattttctttatccactcacctgttgaaggacacttagcttgatttcatgtcttgtgtattttgaaaactgttgcaaaggacatgagagtgtagatatctctgccatacactgattttattccctttgaatgtatacccagtattgggattgctggatcatatggcagttctatttttaatgttttgaggaattcccctactggttttcaaaatggctgcagtaatttacattcctaccaatagtgcacaagtgttcccttttcttcacatccatgtcaatatttgttactttttgtc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1923670 538 - 91010382 cccttaaacttattacccttatctaactgaaattttatatcctttgac------------------------caacatct-------ccctaatcgatgagttcaactttttaagattccacatataagtgagatcatgtggtatttgtgtttctgtgtcttacatctttcacttaatacaatatcccccagcttcatccatattgttgcacctaacacaagtgtccttcatttttaaagctgcatagtattccattgtgtatatata--ccacattttctttatccactcaccttttgaaggacacttagcttgatttcatgtcttgtgtattttgaaaactgttgcaaaggacatgagagtgtagatatgtctgccatacactgattttattccctttgaatatatacccagtattgggattgctggatcatatggcagttctatttttaatgttttgaggaattcccctactggttttcaaaatggctgcagtaatttacattcctaccaatagtgcacaagtgttcccttttcttcacatccatgtcaatatttgttattttttgtc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2043411 538 + 5179401 cccttaaacttattacccttatctaactgaaattttatatcctttgac------------------------caacatct-------ccctaatccatgagttcaactttttaagattccacatataagtgagatcatgtggtatttgtctttctgtgtctgacatatttcacttaatacaatatcccccagcttcatccatgttgttgcaactaacacaagtgtccttcatttttaaagctgaatagtattccattgtgtatatata--ccacattttctttatccactcacctgttgaaggacacttagcttgatttcatgtcttgtgtattttgaaaactgttgcaaaggacatgagagtgtagatatctctgccatacactgattttattccctttgaatgtatacccagtattgggattgctggatcatatggcggttctatttttaatgttttgaggaattcccctactggttttcaaaatggttgcagtaatttacattcctaccaatagtgcacaagtgttcccttttcttcacatccatgtcaatatttgttactttttgtc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7745921 538 - 21726897 cccttaaacttattacccttatctaactgaaattttatatcctttgac------------------------caacatct-------ccctaatccatgagtccaactttttaagattccacatgtaagtgagatcaggtggtatttgtctttctgtgtctgacttatttcacttaatacagtattctccagcttcatccatgttgttgcaactaacacaagtgtccttcatttttaaagctgaatagtattccattgtgtatttata--ccacattttctttatccattcacctgttgaaggacacttagcttgatttcatgtcttgtgtattttgaacactgttgcaaaggacatgagagtgtagatatctctgccatacactgattttattccctttgaatatatacccagtattgggattgctggatcatatggcagttctatttttaatgttttgaggaattcccatactggttttcaaaatggctgcactaatttgcattcctaccaagagtgcacaagtgttcccttttcttcacatccttgtcaatatttgttattttttgtc i colAng1.NW_012115488v1 C 0 C 0 s cebCap1.NW_016107830v1 368343 560 - 1393929 ccctttaac---ttactcttatctagctgaaattttatatcctttaacccatgagttcaactttttaagattccacatctaagtgagatctaatccataaattcaactttttaagattctgcatgtaagtgagatagtgtggtatttgtctttctgtgtctgacttatttcatttaacacagtatcccccagctttctccatattgttgcaagtaaca-aaatgtccttcatttttaaggctgaatagtattccattgtatatatatatgccacattttctttatccattcacc-attgaaggacacttagcttgatttcatgtcttggctattttgaaaaatgttacaatgaacatgagagtgtagatatctcttccatacactgattttatttcctttgaatatatacccagtattgggattgctggatcatatggtagttc--tttttaattttttgagcactttctgtactggttttcataatggctgcactaatttacattcctaccaatggtgcacaagtgctcccttttcttcacatac-tgtcaacat---ttgtcttttgtc i cebCap1.NW_016107830v1 I 2 I 22 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1262171 0 - 11655695 C e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e aotNan1.NW_018506370v1 1440678 650 - 15889662 I e saiBol1.JH378106 45004460 5169 + 71252344 I e calJac3.chr2 112556700 0 + 204313951 C a score=114341.000000 s hg38.chr5_GL383530v1_alt 70910 25 + 101241 tttttc----------tctttttcttttttttttt s panTro5.chr5 20304826 25 + 181907262 tttttc----------tctttttcttttttttttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20317146 35 + 183735486 tttttcttctttttcttttttttcttttttttttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4803802 31 - 13748885 tttttc----tctttttcttttttttttttttttt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53835553 25 - 163208435 tttttc----------tcttttgtttttttttttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87859009 25 - 180051392 tttttc----------tctttttctttttttcttt i rheMac8.chr6 C 0 I 27 s macFas5.chr6 87963433 25 - 181584905 tttttg----------tctttttctttttttcttt i macFas5.chr6 C 0 I 27 s macNem1.NW_012011400v1 1190910 25 - 8785636 tttttC----------TCtttttctttttttcttt i macNem1.NW_012011400v1 C 0 I 286 s cerAty1.NW_012002401v1 1654612 25 + 27333823 tttttc----------tctttttctttttttcttt i cerAty1.NW_012002401v1 C 0 I 29 s chlSab2.chr4 1924208 24 - 91010382 tttttC----------TC-TTTCctttttttcttt i chlSab2.chr4 C 0 I 36 s manLeu1.NW_012103732v1 2043949 25 + 5179401 tttttc----------tctttttctttttttcttt i manLeu1.NW_012103732v1 C 0 I 26 s colAng1.NW_012115488v1 7746459 25 - 21726897 tttttt----------tcttttcttttcttttttt i colAng1.NW_012115488v1 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1262171 0 - 11655695 C e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e aotNan1.NW_018506370v1 1440678 650 - 15889662 I e cebCap1.NW_016107830v1 368903 22 - 1393929 I e saiBol1.JH378106 45004460 5169 + 71252344 I e calJac3.chr2 112556700 0 + 204313951 C a score=60034.000000 s hg38.chr5_GL383530v1_alt 70935 16 + 101241 tt-gagatagtgtctca s panTro5.chr5 20304851 17 + 181907262 tttgagatagtgtctca i panTro5.chr5 C 0 C 0 s panPan2.chr5 20317181 16 + 183735486 tt-gagatagtgtctca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4803833 16 - 13748885 tt-gagatagtgtctca i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53835578 17 - 163208435 tttgagatagagtctca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87859061 16 - 180051392 tg-gagatagagtctca i rheMac8.chr6 I 27 C 0 s macFas5.chr6 87963485 16 - 181584905 tg-gagatagagtctca i macFas5.chr6 I 27 C 0 s cerAty1.NW_012002401v1 1654666 16 + 27333823 tg-gagagagagtctca i cerAty1.NW_012002401v1 I 29 C 0 s chlSab2.chr4 1924268 16 - 91010382 tg-gagatagagtctca i chlSab2.chr4 I 36 C 0 s manLeu1.NW_012103732v1 2044000 16 + 5179401 tg-gagatagagtctca i manLeu1.NW_012103732v1 I 26 C 0 s colAng1.NW_012115488v1 7746484 16 - 21726897 tg-aagatagagtctca i colAng1.NW_012115488v1 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1262171 0 - 11655695 C e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e aotNan1.NW_018506370v1 1440678 650 - 15889662 I e cebCap1.NW_016107830v1 368903 22 - 1393929 I e saiBol1.JH378106 45004460 5169 + 71252344 I e calJac3.chr2 112556700 0 + 204313951 C e macNem1.NW_012011400v1 1190935 286 - 8785636 I a score=941313.000000 s hg38.chr5_GL383530v1_alt 70951 239 + 101241 ctctgttgcccaggctggagtgcagtggcacgatctcggctcaccgcaacttccgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgcgattgcaggcacgtgccaccacccttggataatttttgtatttttagtagagacgaggtttcaccatgttggccaggctgatcttgaaatcccaacctcaggtgatccgcctgcctcggcctcccaga------gtgctggg s panTro5.chr5 20304868 239 + 181907262 ctctgttgcccaggctggagtgcagtggcacgatctcggctcaccgcaacttccgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgggattgcaggcacgtgccaccacccgtggataatttttgtattttcagtagagacgaggtttcaccatgttggccaggctgatcttgaaatcccaacctcaggtgatccacctgcctcggcctcccaaa------gtgctggg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20317197 239 + 183735486 ctctgttgcccaggctggagtgcagtggcacgatctcggctcaccgcaacttccgcctcccaggttcaagtgattctcctgcctcagcctcccaagtagctgggattgcaggcacgtgccaccacccgtggataatttttgtattttcagtagagatgaggtttcaccatgttggccaggctgatcttgaaatcccaacctcaggtgattcacctgcctcggcctcccaaa------gtgctggg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4803849 239 - 13748885 ctctgttgcccaggctggagtgcagtggcacgatctcggctcactgcaacttccgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggattgcaggcacgtgccaccacccttggataatttttgtatttttagtagagacgaggtttcaccatgttggccaggctgatcttgaaatcccaacctcaggtgatccgcctgcctcggcctcccaaa------gtgctggg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53835595 239 - 163208435 ctctgttgcccaagctggagtacagtggcacaatctcggctcactgcaacttctgcctcccaggttcaagtgattctcctgcctcagccttgggagtagctgggattgcaggcacatgccaccacccttggataatttttgtattttcagtagagacaaggtttcatcatgttggccaggctgatcttgaaatcccaacctcaggtgatcctcctgccttggcctcccaaa------gtgctggg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87859077 239 - 180051392 ctctgtttcccaggctggagtgcactggcatgatctcggctcaccacaacttccgcctcccgggttcaagcgattctcctgcttcaggctcccaagtagctgggattgcaggcacgtgccaccacccttggataatttttgtattttcagtagagatgaggtttcaccatgttggccaggctgatcttgaaatcccaacctcaggtgatccacctgcctcagcctcccaaa------gtgctggg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87963501 239 - 181584905 ctctgtttcccaggctggagtgcactggcatgatctcggctcaccacaacttccgcctcccgggttcaagcgattctcctgcttcagcctcccaagtagctgggattgcaggcacgtgccaccacccttggataatttttgtattttcagtagagatgaggtttcaccatgttggccaggctgatcttgaaatcccaacctcaggtgatccacctgcctcagcctcccaaa------gtgctggg i macFas5.chr6 C 0 C 0 s cerAty1.NW_012002401v1 1654682 239 + 27333823 ctctgtttcccaggctggagtgcactggcatgatctcggctcaccacaacttccgcctcccgggttcaagcgattctcctgcttcagcctcccaagtagctgggattgcaggcacgtgccaccacccttggataatttttgtattttcagtagagatgaggtttcaccatgttggccaggctgatcttgaaatcccaacctcaggtgatccacctgcctcagcctcccaaa------gtgctggg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1924284 238 - 91010382 ccctgtttcccaggctggagtgcactggcatgatctcggctcaccacaacttccgcctcccaggttcaagcaattctcctgcttcagcctcccaagtagctgggattgcaggcacgtgccaccacccttggataatttttgtattttcagtagagatgaggtttcaccatgttggccaggctgatcttgaaatcccaacctcaggtgatccacctgcatcggcctccc-at------gtgctggg i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7746500 245 - 21726897 ctctgtttcccaggctggagtgcactggcatgatcttggctcaccacaatttccgcctcccgggttcaagcgattctcctgcctcagcctcccaaatagctgggattgcgggcacgtgccaccacccttggataatttttgtattttcagtagagatgtggtttcaccatgttggccaggctgattttgaaatcccagcctcaggtgatccacctgcctcagcctcccgaagagctggtgctggg i colAng1.NW_012115488v1 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1262171 0 - 11655695 C e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e aotNan1.NW_018506370v1 1440678 650 - 15889662 I e cebCap1.NW_016107830v1 368903 22 - 1393929 I e saiBol1.JH378106 45004460 5169 + 71252344 I e calJac3.chr2 112556700 0 + 204313951 C e manLeu1.NW_012103732v1 2044016 0 + 5179401 C e macNem1.NW_012011400v1 1190935 286 - 8785636 I a score=81766.000000 s hg38.chr5_GL383530v1_alt 71190 31 + 101241 gttacaggcatgagccactgtg--------------------cctggcc----------tt s panTro5.chr5 20305107 31 + 181907262 gttacaggcatgagccactgtg--------------------cctggcc----------tt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20317436 33 + 183735486 gtta------------------nnnnnnnnnnnnnnnnnnnncctggcc----------tt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4804088 31 - 13748885 gttacaggcgtgagccactgtg--------------------cctggcc----------tt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53835834 31 - 163208435 gctacaggcatgaaccactgtg--------------------cctggcc----------tt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87859316 41 - 180051392 gttatagtcatgagccactgta--------------------cccggcctttttttttttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87963740 41 - 181584905 gttacagtcatgagccactgta--------------------cccggcctttttttttttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1191221 34 - 8785636 GTTACAGTCATGAGCCACTGTA--------------------CCTGGCC-------ttttt i macNem1.NW_012011400v1 I 286 C 0 s cerAty1.NW_012002401v1 1654921 31 + 27333823 gttacagtcatgagccactgta--------------------cccggcc----------tt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1924522 29 - 91010382 gttacagtcatgagccactgta--------------------cccagtc------------ i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7746745 31 - 21726897 gttagagtcatgagacactgca--------------------cctggct----------tt i colAng1.NW_012115488v1 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1262171 0 - 11655695 C e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e aotNan1.NW_018506370v1 1440678 650 - 15889662 I e cebCap1.NW_016107830v1 368903 22 - 1393929 I e saiBol1.JH378106 45004460 5169 + 71252344 I e calJac3.chr2 112556700 0 + 204313951 C e manLeu1.NW_012103732v1 2044016 0 + 5179401 C a score=4664.000000 s hg38.chr5_GL383530v1_alt 71221 1 + 101241 t s panTro5.chr5 20305138 1 + 181907262 t i panTro5.chr5 C 0 C 0 s panPan2.chr5 20317469 1 + 183735486 t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4804119 1 - 13748885 t i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53835865 1 - 163208435 t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87859357 1 - 180051392 t i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87963781 1 - 181584905 t i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1191255 1 - 8785636 t i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1654952 1 + 27333823 t i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1924551 1 - 91010382 C i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7746776 1 - 21726897 t i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 45009629 1 + 71252344 t i saiBol1.JH378106 I 5169 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1262171 0 - 11655695 C e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e aotNan1.NW_018506370v1 1440678 650 - 15889662 I e cebCap1.NW_016107830v1 368903 22 - 1393929 I e calJac3.chr2 112556700 0 + 204313951 C e manLeu1.NW_012103732v1 2044016 0 + 5179401 C a score=5634.000000 s hg38.chr5_GL383530v1_alt 71222 1 + 101241 t s panTro5.chr5 20305139 1 + 181907262 t i panTro5.chr5 C 0 C 0 s panPan2.chr5 20317470 1 + 183735486 t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4804120 1 - 13748885 t i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53835866 1 - 163208435 t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87859358 1 - 180051392 t i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87963782 1 - 181584905 t i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1191256 1 - 8785636 t i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1654953 1 + 27333823 t i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1924552 1 - 91010382 t i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7746777 1 - 21726897 t i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 45009630 1 + 71252344 c i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1441328 1 - 15889662 t i aotNan1.NW_018506370v1 I 650 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1262171 0 - 11655695 C e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e cebCap1.NW_016107830v1 368903 22 - 1393929 I e calJac3.chr2 112556700 0 + 204313951 C e manLeu1.NW_012103732v1 2044016 0 + 5179401 C a score=148112.000000 s hg38.chr5_GL383530v1_alt 71223 30 + 101241 tttttttttcttttgagacggagtctcttg s panTro5.chr5 20305140 29 + 181907262 tttttttt-cttttgagacggagtctcttg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20317471 28 + 183735486 ttttttta-cttttgagacgttgtctc-ta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4804121 30 - 13748885 tttttttttcttttgagacggagtctcttg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53835867 29 - 163208435 tttttttt-cttttgagatggagtctcttg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87859359 30 - 180051392 ttttttttttttttaagacagagtcccttg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87963783 30 - 181584905 ttttttttttttttaagacagagtcccttg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1191257 30 - 8785636 ttttttttttttttaagacagagtcccttg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1654954 30 + 27333823 ttttttttttttttaggacagagtcccttg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1924553 30 - 91010382 ttttttttttttttaaggcagagtcccttg i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7746778 30 - 21726897 ttttttttttttttaagacagagtcccgtg i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 45009631 28 + 71252344 tttttttttcttttgacatggagtcttg-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 368925 28 - 1393929 tttttttttcttttgacatggagtcttg-- i cebCap1.NW_016107830v1 I 22 C 0 s aotNan1.NW_018506370v1 1441329 28 - 15889662 tttttttttcttttgacatggagtcttg-- i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1262171 0 - 11655695 C e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e calJac3.chr2 112556700 0 + 204313951 C e manLeu1.NW_012103732v1 2044016 0 + 5179401 C a score=2179008.000000 s hg38.chr5_GL383530v1_alt 71253 261 + 101241 ctctgttgcccagactggagtgcagtggcaccatctcagctcactgcaacctccacctcctgagttcatgcaattctcttgccccagcctcctgagtagctgggattacaggcgtgcaccaccacacccggctaatttttag-tatttttaatagagacgggatttcaccatgttggccaggctggtcttgaccccctgacctcaagtgatccacccgcctcaaacccccaaaatgctgggatcacagatgtgagccaccac s panTro5.chr5 20305169 261 + 181907262 ctctgttgccgagactggagtgcagtggcaccatctcagctcactgcaacctccacctcctgagttcatgcaattctcttgtcccagcctcctgagtagctgggattacaggcgtgcaccaccacacccagctaatttttag-tatttttaatagagacgggatttcaccatgttggccaggctggtcttgacctcctgacctcaagtgatccacccacctcaaacccccaaaatgctgggatcacagatgtgagccactgc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20317499 261 + 183735486 ctctgttgcccagactggagtgcagtggcaccatctcagctcactgcaacctccacctcctgagttcatgcaattctcttgtcccagcctcctgagtagctgggattacaggcgtgcaccaccacacccagctaatttttag-tatttttaatagagacgggatttcaccatgttggccaggctggtcttgacctcctgacctcaagtgatccacccgcctcaaacccccaaaatgctgggatcacagatgtgagccaccgc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4804151 261 - 13748885 ctctgttgcccagactggagtgcagtggcaccatctcagctcactgcaacctccacctcctgagttcatgcaattctcttgtcccagcctcctgagtagctgggattacaggcgtgcaccaccacacccggctaatttttag-tatttttaatagagacgggatttcaccatgttggccaggctggtcttgacctcctgacctcaagtgatccacccgcctcaaacccccaaaatgctgggatcacagatgtgagccaccgc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53835896 260 - 163208435 ctctgttgcccagactggagtgcagtggcaccatctcagctcactgcaacctccacctcctgagttcatgcaattctcttgccccagcctcctgagtagctgggattacaggcatgcaccaccacacccagctaattttttg-tattttt-atagagacaggatttcaccatgttggccaggctggtctcgacctcctgacctcaagtgatccacccgcctcaaacccccaaaatgctgggatcacaggtgtgagccaccgc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87859389 262 - 180051392 ctctgtcgcccagactggagtgcagtggcaccatctcggctcactgcaacctccacctcctgggttcatgcaattctcttgccccagcctcctgagtagctgggattacaggcatatgccaccacgcccagctaagtttttgttatttttagtagaaatgggatttcaccatgttggccaggctggtttcaacctcctgatctcaagtgatccacaaacatcagcctcccaaagtgctgggatcacaggtgtgagccactgt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87963813 262 - 181584905 ctctgtcgcccagactggagtgcagtggcaccatctcggctcactgcaacctccacctcctgggttcatgcaattctcttgccccagcctcctgagtagctgggattacaggcatatgccaccacgcccagctaagtttttgttatttttagtagaaatgggatttcaccatgttggccaggctggtttcaacctcctgatctcaagtgatccacctgcctcagcctcccaaagtgctgggatcacaggtgtgagccactgt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1191287 262 - 8785636 ctctgtcgcccagactggagtgcagtggcaccatctcggctcactgcaacctccacctcctgcgttcatgcaattctcttgccccagcctcctgagtagctgggattacaggcatatgccaccacgcccagctaagtttttgttatttttagtagaaatgggatttcaccatgttggccaggctggtttcaacctcctgatctcaagtgatccacctgcctcagcctcccaaagtgctgggatcacaggtgtgagccactgt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1654984 257 + 27333823 ctctgtcgcccagactggagtgcagtggcaccatctcggctcactgcaacctccacctcctgggttcatgcaattctcttgccccagcctcctgagtagctgggattacaggcatatgccaccacgcccggc-----ttttgttatttttagtagaaatgagatttcaccatgttggccaggctggtttcaacctcctgatctcaagtgatccacctgcctcagcctcccaaagtgctgggatcacaggtgtgagccactgt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1924583 262 - 91010382 ttctgtcgcccagactggagtgcagtggcaccatctcggctcactgcaacctccacctcctgggttcatgcaattctcttgccccagcctcctgagtagctgggattacaaggatatgccaccactcccggctaaggttttgttatttttagtagaaatgggatttcaccatgttggccagggtggtttcaacctcctgatctcaattgatccacctgcctcagcctcccaaagtgctgggatcacaggtgtgagccactgt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2044016 257 + 5179401 ctctgttgcccagactggagtgcagtggcaccatctcggctcactgcaacctccacctcctgggttcatgcaattctcttgccccagcctcctgagtagctgggattacaggcatatgtcaccacgcccggc-----ttttgttatttttagtagaaatgggatttcaccatgttggccaggctggtttcaacctcctgatctcaagtgatccacctgcctcagcctcccaaagtgctgggatcacaggtgtgagccactgt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7746808 258 - 21726897 ctctgtcgcccagactggagtgcagtggcactatcttggctcactgcaacctccacctcctgggttcatgcaattctcttgtcccagccttctg---agctgggattacagatgtgtgccactatgcccggctaagtttttg-tatttttagtagagatgggatttcaccatgttggccaggctggtctcgacctcctgatctcaagtgatccacccacctcagcctcccaaagtgctgggatcacaggtgtgagccactgt i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 45009659 261 + 71252344 cattgttccccagcctctagtgcagtggcacaatctcagctcactgcagcctccacttcctgagttcatgcaattctcttgcctcagcctccggaatagctgggattactggcgtaagctgccacacccggctaattttttg-tatttttagtaaagatggggtttcaccatgttggccaagatggtcttgacctcctgacctcaagtgacccacctgcctcagcctcccaaagtgctgggatcacaagtgtgagccaccac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 368953 261 - 1393929 ctctgttccccagcctagtgtgcagtggcacaatctcagctcactgcaacctctacttcctgagttcatgcaattctcttgcctcagcctctggagtagctgggattactggcgtgagccaccacactcagctaattttttg-tatttttagtagagatggggtttcacagtgttggccaggatggtctcgacctccagacctcaagtgacccacctgcctcagcctcccaaattgctgggaccacaagtgtgagccaccac i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1441357 261 - 15889662 ctctgttccccagcctagagtgcagtggcacaatctcagctcactgcaacctccacttcctgagttcatgcaattctcttgccttagcctctggagtagctgggattactggcgtgagctgccacacccggctaattttttg-tatttttagtagagatggggtttcaccacgttggccaggatggtctcaacctcctgacttcaagtgacctgcctgcctcagcctcccaaagtgctgggatcacaagtgtgagccaccac i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1262171 0 - 11655695 C e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I e calJac3.chr2 112556700 0 + 204313951 C a score=69970.000000 s hg38.chr5_GL383530v1_alt 71514 8 + 101241 acccagca s panTro5.chr5 20305430 8 + 181907262 acccagca i panTro5.chr5 C 0 C 0 s panPan2.chr5 20317760 8 + 183735486 acccagca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4804412 8 - 13748885 acccagca i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53836156 8 - 163208435 atccagca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87859651 8 - 180051392 gcccaaca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87964075 8 - 181584905 gcccaaca i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1191549 8 - 8785636 gcccAACA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1655241 8 + 27333823 gcccaaca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1924845 8 - 91010382 gcccaaca i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2044273 8 + 5179401 gcccaaca i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7747066 8 - 21726897 acccaaca i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112556700 8 + 204313951 ACGCAGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45009920 8 + 71252344 acccagca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 369214 8 - 1393929 actcagca i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1441618 8 - 15889662 acccagca i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1262171 0 - 11655695 C e mm10.chr13 76479646 2004 + 120421639 I e otoGar3.GL873536 28541611 286 + 29863360 I a score=2657401.000000 s hg38.chr5_GL383530v1_alt 71522 269 + 101241 atcttttgtctttttcataatagccattctaacaggtatgcagtgaaatctcattgtggtattaatttgcattt-ttctgctga------------ttggtg------------------------------------------------------atattgagcatttttttgtacacctgttggccatttgtatatattc-tttttagaaatgtctgttcagatcctctgcctattttttaattggtttgttttcttgctattgag---------ttcctttatatattttggatattaagcctttatcatatgtatTCTGGGGATGTTGTTTAATCTATACTC s panTro5.chr5 20305438 269 + 181907262 atcttttgtctttttgataatagccattctaacaggtatgcagtgaaatctcattgtggtattaatttgcattt-ttctgctga------------ttggtg------------------------------------------------------atattgagcatttttttgtacacctgttggccatttgtatatattc-tttttagaaatgtctgttcagatcctctgcctattttttaattggtttgttttcttgctattgag---------ttcctttatatattttggatattaagcctttatcatatgtatTCTGGGGATGTTGTTTAATCTATACTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20317768 269 + 183735486 atcttttgtctttttgataatagccattctaacaggtatgcagtgaaatctcattgtggtattaatttgcattt-ttctgctga------------ttggtg------------------------------------------------------atattgagcatttttttgtacacctgttggccatttgtatatattc-tttttagaaatgtctgttcagatcctctgcctattttttaattggtttgttttcttgctattgag---------ttcctttatatattttggatattaagcctttatcatatgtatTCTGGGGATGTTGTTTAATCTATACTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4804420 269 - 13748885 atcttttgtctttttgataatagccattctaacaggtatgcagtgaaatctcactgtggtattaatttgcattt-ttctgctga------------ttggtg------------------------------------------------------atattgagcatttttttgtacacctgttggccatttgtatatattc-tttttagaaatgtctgttcagatcctctgcctattttttaattggtttgttttcttgctattgag---------ttcctttatatattttggatattaagcctttatcatatgtatTCTGGGGATGTTGTTTAATCTATACTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53836164 270 - 163208435 atcttttgtctttttgataatagccattctaacagatatgcagtgaaatctcattgtggtattaatttgcattt-ttctgctga------------ttggtg------------------------------------------------------atattgagcatttttttgtacacctgttggccatttgtatatattcttttttaggaatgtctgttcagatcctctgcctattttttaattggtttattttcttgctattgag---------ttcccttatatattttggatattaagcctttatcatatgtattctggggatgttgtttaatctgtaCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87859659 268 - 180051392 atctttcatttttttgataatagccattctaacaggtatgcagtgaaatctcattgtggtattaatttgcattt-ttctgctga------------tcggtg------------------------------------------------------atattgagc-cttttttgtatacctgttggccatttgtatatattc-tttttagaaatgtctattcagatcctctgcctattttttaattgggttgttttcttgctattgag---------ttcctttatatattttggatattaagcctttatcaaatgtatTCTGGGAATGTTGTTTAATCTATACTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87964083 268 - 181584905 atctttcatttttttgataatagccattctaacaggtatgcagtgaaatctcattgtggtattaatttgcattt-ttctgctga------------tcggtg------------------------------------------------------atattgagc-cttttttgtatacctgttggccatttgtatatattc-tttttagaaatgtctattcagatcctctgcctattttttaattgggttgttttcttgctattgag---------ttcctttatatattttggatattaagcctttatcaaatgtatTCTGGGAATGTTGTTTAATCTATACTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1191557 268 - 8785636 atctttaatttttttgataatagccattctaacaggtatgcagtgaaatctcattgtggtattaatttgcattt-ttctgctga------------tcggtg------------------------------------------------------atattgagc-cttttttgtatacctgttggccatttgtatatattc-tttttagaaatgtctattcagatcctctgcctattttttaattgggttgttttcttgctattgag---------ttcctttatatattttggatattaagcctttatcaaatgtatTCTGGGAATGTTGTTTAATCTATACTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1655249 268 + 27333823 atctttcatttttttgataatagccattctaacaggtatgcagtgaaatctcattgtggtattaatttgcattt-ttctgctga------------tcggtg------------------------------------------------------atattgagc-cttttttgtatacctgttggccatttgtatatattc-tttttagaaatgtctattcagatcctctgcctattttttaattgggttgttttcttgctattgag---------ttcctttatatattttggatattaagcctttatcaaatgtatTCTGGGGATGTTGTTTAATCTATACTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1924853 268 - 91010382 gtctttcatttttttgataatagccattctaacaggtatgcagtgaaatctcattgtggtattaatttgcattt-ttctgctga------------tcggtg------------------------------------------------------atattgagc-cttttttgtatacctgttggccatttgtatataatc-tttttagaaatgtctattcagatcctctggctattttttaattgggttgttttcttgctattgag---------ttcctttatatattttggatatttagcctttatcaaatgtatTCTGGGGATGTTGTTTAATCTATACTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2044281 268 + 5179401 atctttcatttttttgataatagccattctaacaggtatgcagtgaaatctcattgtggtattaatttgcattt-ttctgctga------------tcggtg------------------------------------------------------atattgagc-cttttttgtatacctgttggccatttgtatatattc-tttttagaaatgtctattcagatcctctgcctattttttaattgggttgttttcttgctattgag---------ttcctttatatattttggatattaaacctttatcaaatgtatTCTGGGGATGTTGTTTAATCTATACTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7747074 268 - 21726897 atctttcatttttttgataataaccattctaacaggtatgcagtgaaatctcattgtggtattaatttgctttt-ttctgctga------------ttggtg------------------------------------------------------atgttgagc-actttttgtatacccgttggccatttgtatatattc-ttattagaaatgtctattcagaccctctgcctattttttaattgggttgttttcttgctattgag---------ttcgtttatatattttggatgttaagcctttatcaaatgtatTCTGGGGATGTTGTTTAATCTATACTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112556708 266 + 204313951 atcttttgtctttttgctaatagccattctaacaggtatgtggtgaaatctcgttgtggtattaatttgcatttcttctgacga------------ttagtg------------------------------------------------------atattgagcattttttcatatgactgttggccatttatatatattc-ttttcagaaatgtctattcagatcctctgcctattttttaactgggttgttttcttgctattgaa----ttga-gttccttatatattttggaaattaagctcttaccaaatgttttctcaatatgt---tta-----tactt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45009928 270 + 71252344 atcttttgtctttttgctaatagccattctaacaggtatgtggtgaaagctcattgtggtattaatttgcatttcttctgatga------------ttagtg------------------------------------------------------atattgagcattttttcatataactgttggccatttgtatatattc-ttttcagaaatgtctattcagatcctctgcctattttttaactggattgttttcttgctattgag----ttgattttccttacatattttggatattaagcccttaccaaacatatTCTCAGTATGTTGCTTA-----TACTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 369222 268 - 1393929 atcttttttccttttgctaatagcaattctaacaggtatgtggtgaaatctcattgtggtattaatttgcatttcttctgatga------------ttagtg------------------------------------------------------atattgagca-tttttcatataactattggccatttatatataata-ttttcagaaatgtctattcagatcctctgcctattttttaactggattgttgtcttgctattgag----ttga-gttccttatatgttttggatattaagcccttaccaaatgtatTCTCGGTGTGTTGTTTA-----TACTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1441626 269 - 15889662 attttttgtctttttgctaatacccattctgacaggtatgcggtgaaatctcattgtggtattaatttgcatttcttctgatga------------ttagtg------------------------------------------------------atattgagcattttttcatataactgttggccatttatatatattc-ttttcagaaatgtctattcagatcctctgcctattttttaactggattgttttcttgctattgag----ttga-gttccttatatattttggatattaagcccttaccaaatgtatTCTCGGTATGTTGTTTA-----TGCTT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1323242 308 - 29863360 atttttcatcttcttggtaataacaattctaacagatatgagatgatatctcattgtggttttaatttgcatgt-ctctgatgaaacacatatctcatggtggttttaatttgcatgtgtctcttcaggaatttataatgtagtagagaaaataaaatattaagc-atttttcatgtactttttgaccatttttatgtcttc-ttttgaaaaaagtctattcagatcctttgcccattgggttatttgtt--tttttttaatactgagttgtttga-gttccttatatattctggaAAT--------------------------------GTTTAATCTGTACTA i otoGar3.GL873536 I 750 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1262171 0 - 11655695 C e mm10.chr13 76479646 2004 + 120421639 I a score=1420446.000000 s hg38.chr5_GL383530v1_alt 71791 134 + 101241 CCCTGTTAATTAA----CTTTTATTAAGAAATGTTGTAGAGTTTTTGGATTGCATTAAAATTA----GGTAGATACCAAATTGAAATGGAATTTGTGA--CTTTTAGCAAAATACTAAAATAAGGTGTTTAATAATTAAAAGAA s panTro5.chr5 20305707 134 + 181907262 CCCTGTTAATTAA----CTTTTATTAAGAAATGTTGTAGAGTTTTTGGATTGCATTAAAATTA----GGTAGATACCAAATTGAAATGGAATTTGTGA--CTTTTAGCAAAATACTAAAATAAGGTGTTTAATAATTAAAAGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20318037 134 + 183735486 CCCTGTTAATTAA----CTTTTATTAAGAAATGTTGTAGAGTTTTTGGATTGCATTAAAATTA----GGTAGATACCAAATTGAAATGGAATTTGTGA--CTTTTAGCAAAATACTAAAATAAGGTGTTTAATAATTAAAAGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4804689 133 - 13748885 CCCTGTTAATTAA-----TTTTATTAAGAAATGTTGTAGAGTTTTTGGATTGCATTAAAATTA----GGTAGATACCAAATTGAAATGGAACTTGTGA--CTTTTAGCAAAATACTAAAATAATGTGTTTAATAATTAAAAGAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53836434 133 - 163208435 TCCTGTTAATTAA----CTTTTATTAAGAAATGTTGTAGAG-TTTTGTATTGCATGAAAATTA----GGTAGATACCAAACTGAAATGGAATTTGTGA--CTTTTAGCAAAATACTAAAATAAGGCGTTTAATAATTAAAATAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87859927 135 - 180051392 CCATGTTAATTAATTAACTTTTATTATGAAA---TGTAGAATTTTTGGATTGCATTACAATTA----GGTAGATACCAAATCGAAATGCAATTTGTGA--CTTTTAGCAAAATACTAAAATAAAGCATTTAATAATTGAAAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87964351 135 - 181584905 CCATGTTAATTAATTAACTTTTATTAAGAAA---TGTAGAATTTTTGGATTGCATTACAATTA----GGTAGATACCAAATCGAAATGCAATTTGTGA--CTTTTAGCAAAATACTAAAATAAAGCATTTAATAATTGAAAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1191825 135 - 8785636 CCATGTTAATTAATTAACTTTTATTAAGAAA---TGTAGAATTTTTGGATTGCATTACAATTA----GGTAGATACCAAATCGAAATGCAATTTGTGA--CTTTTAGCAAAATACTAAAATAAAGCATTTAATAATTGAAAGAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1655517 135 + 27333823 CCATGTTAATTAATTAACTTTTATTAAGAAA---TGTAGAATTTTTGGATTGCATTACAATTA----GGTAGATACCAAATCGAAATGCAATTTGTGA--CTTTTAGCaaaatactaaaataaagcatttaataattgaaagaa i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1925121 135 - 91010382 CCATGTTAATTTATTAACTTTTATTAAGAAA---TGTAGAATTTTTGGATTGCATTACAATTA----GGTAGATACCAAATCGAAATGCAATTTGTGA--CTTTTAGCAAAATACTAAAATAAAGCATTTAATAATTGAAAGAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2044549 135 + 5179401 CCATGTTAATTAATTAACTTTTATTAAGAAA---TGTAGAATTTTTGGATTGCATTACAATTA----GGTAGATACCAAATCGAAATGCAATTTGTGA--CTTTTAGCAAAATACTAAAATAAAGCATTTAATAATTGAAAGAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7747342 138 - 21726897 CCCTGTTAATTAATTAACTTTTATTAAGAAATGTTGTAGAGTTTTTGGATTGCATTAAAATTA----GGTAGATACCAAATCGAAATGCAGTTTGTGA--CTTTTAGCAAAATACTAAAATAAAGCATTTAATAATTGAAAGAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112556974 132 + 204313951 tcctattaattac----cttttATTAAGAAATGTTGTAG--TTTTTGGATTGCATTAAAATTA----AGTAGACACCAAATTGAAATGGAATTTGTGA--CTTTTAGCCAAATACTAAAATAAAGCTTTTAATAATGAAAAGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45010198 132 + 71252344 TCCTGTTAATTAC----CTTTTATTAAGAAATGTTGTAG--TTTTTGGATTGCATTAAAATTA----GGTAGACACCAAATTGAAATGAAATTTGTGA--CTTTTAGCCAAATACTAAAATAAAGCTTTTAATAATGAAAAGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 369490 132 - 1393929 TCCTGTTAATTAC----CTTTTATTAAGAAATGTTGTAG--TTTTTGGATTGCATTAAAATTA----GGTAGACACCAAATTGAAATGGAATTTGTGA--CTTTTAGCCAAATACTAAAATAAAGCTTTTAATAATGAAAAGAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1441895 132 - 15889662 TCCTGTTAATTAC----CTTTTATTAAGAAATGTTGAAG--TTTTTGGATTGCATTAAAATTA----GGTAGACACCAAATTGAAATGGAATTTGTGA--CTTTTAGCCAAATACTAAAATAAAGCTTTTAATAATGAAAAGAA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1323550 134 - 29863360 CCTGGCTAACTAATTGACTTTCGTTGAGAAA---TGTAGAG-TTTTAGATTATATTAAAATTA----GGTATATACCATAATGCAATGTAATTTGTGA--CTCTTAGTCAAATACtaaaataaaagttttaataattaaaaaaa i otoGar3.GL873536 C 0 I 106 s dasNov3.JH570378 1262171 132 - 11655695 CCCTGTTAATTCACTTACTTTTGTTGAGAAATCTTGTAGAGTTTTTGGATTGAATTAATGTAAGGGTGGTAGATACCAAATTGAAATGGGATTTGTGACTCTTTTAGCCAAATAACAA------------ATTAACCAAAAGAA i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I a score=5686.000000 s hg38.chr5_GL383530v1_alt 71925 6 + 101241 TTAAAA s panTro5.chr5 20305841 2 + 181907262 TT---- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20318171 2 + 183735486 TT---- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4804822 2 - 13748885 TT---- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53836567 6 - 163208435 TTAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87860062 6 - 180051392 TTAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87964486 6 - 181584905 TTAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1191960 6 - 8785636 TTAAAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1655652 6 + 27333823 ttaaaa i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1925256 6 - 91010382 TTAAAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2044684 6 + 5179401 TTAAAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7747480 6 - 21726897 TTAAAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112557106 2 + 204313951 TT---- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45010330 2 + 71252344 TT---- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 369622 2 - 1393929 TT---- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1442027 2 - 15889662 TT---- i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1323790 6 - 29863360 ttaaaa i otoGar3.GL873536 I 106 I 157 s dasNov3.JH570378 1262303 6 - 11655695 TTAAAT i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I a score=1215319.000000 s hg38.chr5_GL383530v1_alt 71931 109 + 101241 TGAAATGTTGGTTA------------TATTTTAAAATTTGTATTTATGTTTAATGGCTAATGAAAGCTTAGGAAGCTGTCCCTAAAATGCCACATTATGTTAATTATGTATTATCTACGTT s panTro5.chr5 20305843 108 + 181907262 -GAAATGGTGGTTA------------TATTTTAAAATTTGTATTTATGTTTAATGGCTAATGAAAGCTTAGGAAGCTGTCCCTAAAATGCCACATTATGTTAATTATGTATTATCTACATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20318173 108 + 183735486 -GAAATGGTGGTTA------------TATTTTAAAATTTGTATTTATGTTTAATGGCTAATGAAAGCTTAGGAAGCTGTCCCTAAAATGCCACATTATGTTAATTATGTATTATCTACATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4804824 108 - 13748885 -GAAATGGTGGTTA------------TATTGTAAAATTTGTATTTATGTTTAATGGCTAATGAAAGCTTAGGAAGCTGTCCCTAAAATGCCACATTATGTTAATTATGTATTATCTACATT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53836573 121 - 163208435 TGAAATTTTAATTATTTTATAATTTGTATTTTATAATTTTTATTTATGTTTAATGACTAATGAGAGCTTAGGAAGCTGTCCCTAAAATGCCACATTATGTTAGTTATGTATTATCTACATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87860068 109 - 180051392 TGAAATGGTGGTTA------------CATTTTAAAATTTGTATTTATGTTTAATGGCTAACGAAAGCTTAGGAAGCTGCGCCTAAAATGCCACATTATGTTAATTATGTATTACCTATGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87964492 109 - 181584905 TGAAATGGTGGTTA------------CATTTTAAAATTTGTATTTATGTTTAATGGCTAACGAAAGCTTAGGAAGCTGCGCCTAAAATGCCACATTATGTTAATTATGTATTACCTATGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1191966 109 - 8785636 TGAAATGGTGGTTA------------CATTTTAAAATTTGTATTTATGTTTAATGGCTAACGAAAGCTTAGGAAGCTGCGCCTAAAATGCCACATTATGTTAATTATGTATTACCTATGTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1655658 109 + 27333823 tgaaatggtggtta------------aattttaaaatttgtatttaagtttaaTGGCTAACGAAAGCTTAGGAAGCTGCCCCTAAAATGCCACATTATGTTAATTATGTATTACCTATGTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1925262 109 - 91010382 TGAAATGGTGGTTA------------CATTTTGAAATTTGTATTTGTGTTTAATGGCTAACAAAAGCTTAGGAAGCTGCCCCTAAAATGCCACATTATGTTAATTATATATTACCTATGTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2044690 109 + 5179401 TGAAATGGTGGTTA------------CATTTTAAAATTTGTATTTATGTTTAATGGCTAACAAAAGCTTAGGAAGCTGCCCCTAAAATGCCACATTATGTTAATTATGTATTACCTATGTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7747486 109 - 21726897 TGAAATGGCAGTTA------------CATTTTAAAATTTGTATTTATGTTTAATGGCTAACGAAAGCTTAGGAAGCTGCCCCTAAAATGCCGCATTATGTTAATTATGTATTACTTATGTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112557108 108 + 204313951 -GAAATGGGGGTTA------------CattttaaaatttatatttatatttaatGGCTAATGAAAGTTTAGGAAGCTGCCCCTAAAATGTCACATTATGTTAATTATGTATTACCTATGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45010332 108 + 71252344 -GAAATGGGGGtta------------aattttaaaatttatatttatatttaatGGCTAATGAAAGTTTAGGAAGCTGTCCCTAAAATGTCACATTATGTTAATTATGTATTACCTATGTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 369624 108 - 1393929 -GAAATGGGGGTTA------------CATTTTAAAATTTGTATTTATATTTAATGGCTAATGAAAGTTTAGGAAACTGTCCCTAAAATGTCACATTATGTTAATTATGTATTACCTATGTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1442029 108 - 15889662 -GAAATGGGGGTTA------------CATTTTAAAATTTATATTTATATTTAATGGCTAATGAAAGTTTAGGAAGCTGTCCCTAAAATGCCACATTATGTTAATTATGTATTATCTATGTT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1323953 105 - 29863360 TAAAATAGTGACtt------------aattttcaaaaatttatttatatttaataGCTAATGAAGATTTAGGAAACTGTCCCTAAAATGTCACATCTCATTAAT----TATTATTTATGTT i otoGar3.GL873536 I 157 C 0 s dasNov3.JH570378 1262309 100 - 11655695 TGAAAC--TGGGTG------------AATTTTAAAAATTG--TTTGTATTTAATGGCTAATGAGGGTTTAAGAAACTGTCCCT-AATTGTCATTTTATATTAA----ATACTACTTGTGTT i dasNov3.JH570378 C 0 I 445 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I a score=4603011.000000 s hg38.chr5_GL383530v1_alt 72040 437 + 101241 CAAAAACTATAAGAGAAAAATT-AACAAATTAA----TGTCCTGGGCTAGAGAAAAAAATCTTAATATGTAAATCTTAATTTGCTTTTGGAGATTCAGTCCTTAGCACCATTAACAA-ATCAATA-------------CAGAGTAAAAGAGAGTGATTTTAGTTTTTACTTTGAATATCCTCTAATGTCTCCCTACAAATTGCCAGGTTCCAAACCTCAACCAATGCTTAGAAACTTTAAGTATAATATTTACTGAGACTGTCATTTATTCATTGGTTGGTTCATTCC---T--TT----TTTAATAGTTATTAAACACCCATTTTG-TGGTACTCT-GTAAAGT------GTGTGTCCTGCTCCCACTGAGTTCTCAGCCATGCTTGGAGACCCGTGAAATT-AATTTGCATCAAAA----------------------TGCTCAACG--------TTGGTCTTTCTTTTAAAAGCGG-GAA----AAGACGCTAAAAACTATAGGCT s panTro5.chr5 20305951 437 + 181907262 CAAAAACTATAAGAGAAAAATT-AACAAATTAA----TGTCCTGGGCTAGAGAAGAAAATCTTAATATGTAAATCTTAATTTGCTTTTGGAGATTCAGTCCTTAGCACCATTGACAA-ATCACTA-------------CAGAATAAAAGAGAGTGATTTTAGTTTTCACTTTGAATATCCTCTAATGTCTCCCTACAAATTGCCAGGTTCCAAACCTCAACCAATGCTGAGAAACTTTAAGTATAATATTTACTGAGACTGTCATTTATTCATTGGTTGGTTCATTCC---T--TT----TTTAATAGTTATTAAACACCAATTTTG-TGGTACTCT-GTAAAGT------GTGTGTCCTGCTCCCACTGAGTTCTCAGCCATGCTTGGAGACCCGTGAAATT-AATTTGCATCAAAA----------------------TGCAAAACG--------TTGGTCTTTCTTTTAGAAGGGG-GAA----AAAACGCTAAAAACTATAGGCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20318281 437 + 183735486 CAAAAACTATAAGAGAAAAATT-AACAAATTAA----TGTCCTGGGCTAGAGAAGAAAATCTTAATATGTAAATCTTAATTTGCTTTCGGAGATTCAGTCCTTAGCACCATTGACAA-ATCAATA-------------CAGAATAAAAGAGAGTGATTTTAGTTTTTACTTTGAATATCCTCTAATGTCTCCCTACAAATTGCCAGGTTCCAAACCTCAACCAATGCCGAGAAACTTTAAGTATAATATTTACTGAGACTGTCATTTATTCATTGGTTGGTTCATTCC---T--TT----TTTAATAGTTATTAAACACCGATTTTG-TGGTACTCT-GTAAAGT------GTGTGTCCTGCTCCCACTGAGTTCTCAGCCATGCTTGGAGACCCGTGAAATT-AATTTGCATCAAAA----------------------TGCAAAACG--------TTGGTCTTTCTTTTAGAAGGGG-GAA----AAAACGCTAAAAACTATAGGCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4804932 437 - 13748885 CAAAAACTATAAGAGAAAAATT-AACAAATTAA----TGTCCTGGGCTAGAGAAGAAAATCTTAATATGTAAATCTTAATTTGCTTTTGGAGATTCAGTCCTTAGCACCATTGACAA-ATCAATA-------------CAGAATAAAAGAGAGTGATTTTAGTTTTTACTTTGAATATCCTCTAATGTCTCCCTACAAATTGCCAGGTTCCAAACCTCAACCAATGCTGAGAAACTTTAAGTATAATATTTACTGAGACTGTCATTTATTCATTGGTTGGTTCATTCC---T--TT----TTTAATAGTTATTAAACACCGATTTTG-TGGTACTCT-GTAAAGT------GTGTGTCCTGCTCCCACTGAGTTCTCAGCCATGCTTGGAGACCCGTGAAATT-AATTTGCATCAAAA----------------------TGCAAAACG--------TTGGTCTTTCTTTTAGAAGGGG-GAA----AAAACGCTAAAAACTATAGGCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53836694 436 - 163208435 CAAAAATTATAAGAGAAAAATT-AACAAATTAA----TTTCCTGGGCTAGAGAAGAAAATCTTAATATATAAATCTTAATTTGCTTTTAGAGATTCAGTCCTTAGCACCATTAACAA-GTCAATA-------------CAGAATAAAAGAGAGTGATATTAGTTTTTACTTTGAATATCCTCTAATGTCTCCCTATAAATTGCCAGGTTCCAAACCTCAACCAATGCTGAGAAAC-GTAAGTATAATATTTACTGAGACTGCCATTTATTCATTGGTTGGTTCATTCC---T--TT----TTTAATAGTTATTAAACACTCATTTTT-TGGTACTCT-GTAAAGT------GTGTATCCTGCTCCCACTGAGTTCTCAGCCATGCTTGGAGACCCATGAAATT-AATTTGCATCAAAA----------------------TGCAaaacg--------ttggtctttcttttaaaagggg-gaa----aaaacgctaaaaactataggct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87860177 443 - 180051392 CAAAAACTATAACAGAAAAATT-AACAAATTAA----TGTCCTCGGCTAGAGAAGAAAATCTTAATACATACATCTTAATTTGCTGTTAGAGATTCAGTCCTTAGCACCATTGACAA-ATCAATACAGCAATGTTGCCCAGAATAAAAGAGAGTGATTTTAGTTTTCACTTTGAATATCCTCTAATGTCTCCCTACAAATTGCCAGGCTTCAAACCTCAACCAATGCTGAGAAAC--TAAGTATAATGTTT------ACTGTCATTTATTCATTGGTTGGTTCATTCC---T--TT----TTTAATAGTTATTAAACATCCATTTTG-TGGTACTCT-GTAAAGT------GTGTGTCCTGCTCCCACTGAGTTCTCAGCCATGTTTGGAGACCCATGAAATT-AATTTGCATCAAAA----------------------TGCAAAACA--------TAGGTCTTTCTTTTGAAAGTGG-GAA---TAAAACGCTAAAAACTATAGGCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87964601 443 - 181584905 CAAAAACTATAACAGAAAAATT-AACAAATTAA----TGTCCTCGGCTAGAGAAGAAAATCTTAATACATACATCTTAATTTGCTGTTAGAGATTCAGTCCTTAGCACCATTGACAA-ATCAATACAGCAATGTTGCCCAGAATAAAAGAGAGTGATTTTAGTTTTCACTTTGAATATCCTCTAATGTCTCCCTACAAATTGCCAGGCTTCAAACCTCAACCAATGCTGAGAAAC--TAAGTATAATGTTT------ACTGTCATTTATTCATTGGTTGGTTCATTCC---T--TT----TTTAATAGTTATTAAACATCCATTTTG-TGGTACTCT-GTAAAGT------GTGTGTCCTGCTCCCACTGAGTTCTCAGCCATGTTTGGAGACCCATGAAATT-AATTTGCATCAAAA----------------------TGCAAAACA--------TAGGTCTTTCTTTTGAAAGTGG-GAA---TAAAACGCTAAAAACTATAGGCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1192075 441 - 8785636 CAAAAACTATAACAGAAAAATT-AACAAATTAA----TGTCCTCGGCTAGAGAAGAAAATCTTAATACATACATCTTAATTTGCTGTTAGAGATTCAGTCCTTAGCACCATTGACAA-ATCAATACAGCAATGTTGCCCAGAATAAAAGAGAGTGATTTTAGTTTTCACTTTGAATATCCTCTAATGTCTCCCTACAAATTGCCAGGCTTCAAACCTCAACCAATGCTGAG--AC--TAAGTATAATGTTT------ACTGTCATTTATTCATTGGTTGGTTCATTCC---T--TT----TTTAATAGTTATTAAACATCCATTTTG-TGGTACTCT-GTAAAGT------GTGTGTCCTGCTCCCACTGAGTTCTCAGCCATGTTTGGAGACCCATGAAATT-AATTTGCATCAAAA----------------------TGCAAAACA--------TAGGTCTTTCTTTTGAAAGTGG-GAA---TAAAACGCTAAAAACTATAGGCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1655767 440 + 27333823 CAAAAACTATAACAGAAAAATT-AACAAATTAA----TGTCCTCGGCTAGAGAAGAAAATCTTAATACATACATCTTAATTTGCTGTTAGAGATTCAGTCCTTAGCAC---TGACAA-ATCAATACAGCAATGTTGCCCAGAATAAAAGAGAGTGATTTTAGTTTTCACTTTGAATATCCTCTAATGTCTCCCTACAAATTGCCAGGCTTCAAACCTCAACCAATGCTGAGAAAC--TAAGTATAATGTTT------ACTGTCATTTATTCATTGGTTGGTTCATTCC---T--TT----TTTAATAGTTATTAAACACCCATTTTG-TGGTACTCT-GTAAAGT------GTGTGTCCTGCTCCCACTGAGTTCTCAGCCATGTTTGGAGACCCACGAAATT-AATTTGCATCAAAA----------------------TGCAAAACA--------TAGGTCTTTCTTTTGAAAGTGG-GAA---AAAAACACTAAAAACTATAGGCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1925371 443 - 91010382 CAAAAACTATAACAGAAAAATT-AACAAATTAA----TGTCCTCGGCTAGAGAAGAAAATCTTAATATATACATCTTAATTTGCTGTTAGAGATTCAGTCCTTAGCACCATTGACAA-ATCAATATAGCAATGTTGCCCAGAATAAAAGAGAATGATTTTAGTTTTCACTTTGAATATCCTCTAATGTCTCCCTACAAATTGCCAGGCTTCAAACCTCAACCAGTGCTGAGAAAC--TAAGTATAATGTTT------ACTGTCATTTATTCATTGGTTGGTTCATTCC---T--TT----TTTAATAGTTATTAAACACCCATTTTG-TGGTACTCT-GTAAAGT------GTGTGTCCTGCTCCCACTGAGTTCTTAGCCATGTTTGGAGACCCATGAAATT-AATTTGCATCAAAA----------------------TGCAAAACA--------TTGGTCTTTCTTTTGAAAGTGG-GAA---AAAACCGCTAAAAACTATAGGCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2044799 438 + 5179401 CAAAAACTATAACAGAAAAATT-AACAAATTAA----TGTCCTCGGCTAGAGAAGAAAATCTTAATACATACATCTTAATTTGCTGTTAGAGATTCAGTCCTTAGCAC---TGAAAA-ACCAATACAGCAATGTTGCCCAGAATAAAAGAG--TGATTTTAGTTTTCACTTTGAATATCCTCTAATGTCTCCCTACAAATTGCCAGGCTTCAAACCTCAACCAATGCTGAGAAAC--TAAGTATAATGTTT------ACTGTCATTTATTCATTGGTTGGTTCATTCC---T--TT----TTTAATAGTTATTAAACACCCATTTTG-TGGTACTCT-GTAAAGT------GTGTGTCCTGCTCCCACTGAGTTCTCAGCCATGTTTGGAGACCCACGAAATT-AATTTGCATCAAAA----------------------TGCAaaaca--------taggtctttcttttgaaagtgg-gaa---aaaaacgctaaaaactataggct i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7747595 449 - 21726897 CAAAAACTATAACAGAAAAATT-AACAAATTAA----TGTCCTGGGCTAGAGAAGAAAATCTTAATATATACATCTTAATTTGCTGTTAGAAATTCATTCCTTAGCACCACTGACAA-ATCAATACAGCAATGTTGCCCAGAATAAAAGACAGTGATTTTAGTTTTCACTTTGAATATCCTCTAATGTCTCCCTACAAATTGCCAGGCTTCAAACCTCAACCCATGCTGAGAAAG--TAAGTATAATGTTTACTGAGACTGTCATTTATTCATTGGTTGGTTCATTCC---T--TT----TTTAATAGTTATTAAACACCTGTTTTG-TGGTACTCT-GTAAAGT------GTGTGTCCTGCTCCCACTGAGTTCTCAGCCATGTTTGGAGACCCATGAAATT-AATTTGCATCAAAA----------------------TGCAAAACA--------Ttggtctttcttttaaaagtgg-gaa---aaaaacgctaaaaactataggct i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112557216 441 + 204313951 CAAAAATTATAACAGAAAAATT-AACAAAGTAA----TGTCCAGGGCTAGAGAAGAAAATCTTAATATATAAATCTTAATTAGCTTTTAGAGATTCAGTCCTTAGCACCATTGACAA-ATCGATACAGCAATGTTGCCCAGAAT--AAAAGAGTTATGTTAGTTTTTACTTT-AATATCCTCTAATGTCTCCCTACCAATTGCCAGGTTTCAAACTTCAACCAACACTGAGAAAC-ATAAACATA---TTTACTGAGACTGTCATTTATTCATTGATTGGTTCATTCC---TCTTT----TTTTATAGTTATTAAACACTCCTTTTGATGGTAGTGT-GTAAAGG------GTGTGTCCTGCTTCCACTGAGTTCTCAGCCACAC-TGGAGACCC---AAACT-GAATTGCATcaaaa----------------------tgcaaaaca--------ttggggtttcttttaaaagggg-ga-----aaaatgctaaaaactgtaggct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45010440 442 + 71252344 TACAAATTATAACAGAAAAATT-AACAAATTAA----TGTCCAGGGCTAGAGAAGAAAATCTTAATATATAAATCTTAATTTGTTTTTAGAGATTCAGTCCTTAGCACCATTAACCA-ATCAATACAGCAATGTTGCCCAGAATGAAAGAGAGTGATGTTAGTTTTTACTTTGAATATCCTCTAATGTCTCCCTATCAATTGCTAGGTTTCAAACCTCAAGCAACGCTGAGAAAC-ATAAACATA---TTTACTGAGACTGTCATTTATTCATTGATTGGTTCACTCC---TC-TT----TTTAATAGTTATTAAACACTCATTTTG-TGGTACTTT-GTAAAGG------GTGTGTCCTGCTTCCACTGAGTTCTCAGCCATACTTGAAGACCC---AAACT-GAATTGCATCAAAC----------------------TGCAAAACA--------Ctggtctttcttttaaaagggg-ga-----aaaatgctaaaaactataga-t i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 369732 443 - 1393929 CAAAAATTATAACACAAAAATT-AATAAATTAA----TGTCCAGGGCTAAAGAAGAAAATCTTAATATATAAATCTTAATTTGCTTTTAGAGATTCAGTCCTTAGCACCATTGACAA-ATCAATATAGCAGTGTTGCCCAGAATAAAAGAGAGTGATGTTAGTTTTTACTTTGAATATCCTCTAATGTCTCCCTACCAATTGCTAGGTTTCAAACCTCAGCCAATGATGAGAAAC-GTAAACATA---TTTACTGAGACTGTCATTTATTCATTGATTGGTTCATTCC---TC-TT----TTTTATAGTTATTAAACACTCATTTTG-TGGTACTCT-GTAAAGG------GTATGTCCTGCTTCCACTGAGTTCTTAGCCACACTTGGAGACCC---AAACT-GAATTGCATCAAAA----------------------TGCAAAACA--------Ttggtctttcttttaaaagggg-ga-----aaaatgctaaaaactataggct i cebCap1.NW_016107830v1 C 0 I 114 s aotNan1.NW_018506370v1 1442137 444 - 15889662 CAAAAATGATAACAGAAAAATT-AACAAATTAA----TGTCCAGGGCTAGAGAAGAAAATCTTAATATATAAATCTTAATTTGCTTTTAGAGATTCAGTCCTTAGCACCATTGACAA-ATCAATACAGCAGTGTTGCCCAGAATAAAAGAGAGTGATGTTAGTTTTTACTTTGAATATCCTCTAATGTCTCCCTACCAATTGCTAGGTTTCAAACCTCAACCAATGCTGAGAAAC-ATAAACATA---TTTACTGAGACTGTCGTTTATTCATTGATTGGTTCATTCC---TC-TT----TTTTATAGTTATTAAACACTCATTTTG-TGGTACTCT-GTAAAGG------GTGTGTCCTGCTTCCACTGAGTTCTCAGCCACACTTGGAGACCC---AAACT-GAATTGCATCAAAA----------------------TGCAaaaca--------ttggcctttcttttaaaaggggaaa-----aaaatgctaaaaactataggct i aotNan1.NW_018506370v1 C 0 I 112 s otoGar3.GL873536 1324058 413 - 29863360 CACAAACTGTAACAGAAAAATT-AACAACT-----------------TAGAAAAGAA------AGAAAATAAACCTTAATTTGCTTTTGGGAATTCAATCTTTAGCACCATTATCAG-ATCGATGCAGAAACCTTGCCCAGAATAAAAGAGATT--TTTTAGTTTTT------------CTCTAATGG----CTAACAATTGCCAGGTTTTAGCTCTTGAGTGATGGTGGGAAAC-CTTAGTACAATATCTACTGCGGCTGTCATTTATTCATTTGTTGTTTCATTTCCTAT--TT----TGTAATATTTATTAGACACTTATTTTG-TGGTGTTC--AAACAGC------ATGTGTCCTAGTCCCACTGAGTTTTTAGCCTTGCTTGGAAACCCATAAAGTTGAATTTGCACTCTTA----------------------TATAAATGA--------CTGATCTTTCTTTTAAGGGGGG-G------GAACCTCTTAAAGTTATAGGCT i otoGar3.GL873536 C 0 C 0 s dasNov3.JH570378 1262854 489 - 11655695 CAAAAACCCTAACAAAATTATTCAACACCTTAAAGCTTTTTCAGGCCT----AAGGAAAGTCCAATATAAATACCTTAATTTGCTTCTGTAGATTCAATCCTTAGCACCATTAGCAAGATCAATACGGTAAAGTTGC-CAGAACAAAGGAG----ATTTTAGTTTGTTC-TTAAATATTCTCTAATGTCTCCCTGCCAATTTCCAGTATATAATTCCTAACCAATGCTGGGAAAC-GTGAGTATCATATTTGCTGATGCTGCCATTTGCTTGTAGGTTGGTTCATTGC---T--TTGTTCTTTTATATTTGTT-GACATCCATTTTC-TGGTGTTTTAGTAAAGGAGGAGAGTGTGTCCTGCTCCCATCGAGTTCCAAACCATGCTTAGAGACCCATATAATTGAATTTGTATCAGAACATGACCTGGGACATACTTTTTTGCAAAATGGAAAAATTTCATCTTTTCTTTTAAAAGAGG-AAAAAGAAAAACTCT-AAAACTTCAGGCT i dasNov3.JH570378 I 445 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I a score=7513.000000 s hg38.chr5_GL383530v1_alt 72477 1 + 101241 A s panTro5.chr5 20306388 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 20318718 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4805369 1 - 13748885 A i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53837130 1 - 163208435 a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87860620 1 - 180051392 A i rheMac8.chr6 C 0 I 120 s macFas5.chr6 87965044 1 - 181584905 A i macFas5.chr6 C 0 I 1 s macNem1.NW_012011400v1 1192516 1 - 8785636 A i macNem1.NW_012011400v1 C 0 I 120 s cerAty1.NW_012002401v1 1656207 1 + 27333823 A i cerAty1.NW_012002401v1 C 0 I 120 s chlSab2.chr4 1925814 1 - 91010382 A i chlSab2.chr4 C 0 I 120 s manLeu1.NW_012103732v1 2045237 1 + 5179401 a i manLeu1.NW_012103732v1 C 0 I 120 s colAng1.NW_012115488v1 7748044 1 - 21726897 a i colAng1.NW_012115488v1 C 0 I 120 s calJac3.chr2 112557657 1 + 204313951 g i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 45010882 1 + 71252344 g i saiBol1.JH378106 C 0 I 1 s otoGar3.GL873536 1324471 1 - 29863360 A i otoGar3.GL873536 C 0 I 1 s dasNov3.JH570378 1263343 1 - 11655695 A i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I e aotNan1.NW_018506370v1 1442581 112 - 15889662 I e cebCap1.NW_016107830v1 370175 114 - 1393929 I a score=-6015.000000 s hg38.chr5_GL383530v1_alt 72478 2 + 101241 -TT s panTro5.chr5 20306389 2 + 181907262 -TT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20318719 2 + 183735486 -TT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4805370 2 - 13748885 -TT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53837131 2 - 163208435 -tt i nomLeu3.chr2 C 0 I 116 s macFas5.chr6 87965046 1 - 181584905 -T- i macFas5.chr6 I 1 I 118 s calJac3.chr2 112557659 1 + 204313951 -t- i calJac3.chr2 I 1 I 111 s saiBol1.JH378106 45010884 1 + 71252344 -t- i saiBol1.JH378106 I 1 I 16 s otoGar3.GL873536 1324473 1 - 29863360 -T- i otoGar3.GL873536 I 1 C 0 s dasNov3.JH570378 1263344 2 - 11655695 CT- i dasNov3.JH570378 C 0 I 184 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I e aotNan1.NW_018506370v1 1442581 112 - 15889662 I e cebCap1.NW_016107830v1 370175 114 - 1393929 I e colAng1.NW_012115488v1 7748045 120 - 21726897 I e manLeu1.NW_012103732v1 2045238 120 + 5179401 I e chlSab2.chr4 1925815 120 - 91010382 I e cerAty1.NW_012002401v1 1656208 120 + 27333823 I e macNem1.NW_012011400v1 1192517 120 - 8785636 I e rheMac8.chr6 87860621 120 - 180051392 I a score=3437747.000000 s hg38.chr5_GL383530v1_alt 72480 330 + 101241 Atac-------------aatggga----------ttccgacctga----------taaatcctga-----------------------------------------------------------taaggtga-aaatgcatttaatcc--------acctaacctac---------taaataccatagcttaacctagtctaccttaaacatgcttagaaca-ttacattagtctacaattgggcaaaattgtctaacacaaagcctactttatattaaagtatggaatatctcatataatttatttaattctgtactaaaagtgaaaaacaggatggttgtgtggatacttacagtat-ggtttctactgaatgtgtatcattt----------------------------------------ttacaccattttaaagtcaaaaaattgtaaactaaaccatggtaagttggagaccat s panTro5.chr5 20306391 329 + 181907262 Atac-------------aatggga----------ttccgacctga----------taaatcctga-----------------------------------------------------------taaggtga-aaatgcatttaatcc--------acctaacctac---------taaataccatagcttaacctagtctaccttaaacatgcttagaaca-ttacattagtctacaattgggcaaaattgtctaacacaaagcctactttatattaaagtatggaatatctcatgtaatttatttaattctgtactaaaagtgaaaaacaggatggttgtgtggatacttacagtat-ggtttctactgaatgtgtatcattt----------------------------------------ttacaccattttaaagtcaaaaaactgtaaaccaaaccatta-aagttggagaccat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20318721 329 + 183735486 Atac-------------aatggga----------ttccgacctga----------taaatcctga-----------------------------------------------------------taaggtga-aaatgcatttaatcc--------acctaacctac---------taaataccatagcttaacctagtctaccttaaacatgcttagaaca-ttacattagtctacaattgggcaaaattgtctaacacaaagcctactttatattaaagtatggaatatctcatgtaatttatttaattctgtactaaaagtgaaaaacaggatggttgtgtggatacttacagtat-ggtttctactgaatgtgtatcattt----------------------------------------ttacaccattttaaagtcaaaaaactgtaaaccaaaccatta-aagttggagaccat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4805372 327 - 13748885 Atac-------------aatggga----------ttctgacctga----------taaatcctga-----------------------------------------------------------taaggtga-aaatgcatttaatcc--------acctaacctac---------taaataccgtagcttaacctagtctaccttaaacatgcttagaaca-ttacattagtctacaattgggcaaaattgtctaacacaaagcctactttatattaaagtatggaatatctcatgtaatttatttaattctgtactaaaagtgaaaaacaggatggttgtgtggatccttacagtat-ggtttctactgaatgtgtatcattt----------------------------------------ttacgccattttaaagtcaaaaaactgtaaaccaaaccat---aagttggagaccat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53837249 331 - 163208435 acac-------------aatggga----------ttccgacctga----------taaatcctga-----------------------------------------------------------taaggtga-aaatgcatttaatcc--------acctaacctac---------taaataccatagcttaacctagtctacgttaaacatgcttagaacacttacattagtctacaattgggcaaaattgtctaacacaaagcctactttatattaaagtatggaatatctcatgtaatttatttaattctgtactaaaagtgaaaaacaggatggttgtgtggatacttgcagtat-ggtttctgatgaatgtgtatcattt----------------------------------------ttataccattttaaagccaaaaaattgtaaactaaaccattataagttggagaccat i nomLeu3.chr2 I 116 C 0 s rheMac8.chr6 87860741 331 - 180051392 atac-------------aatggga----------ttctgacctga----------taaatcctga-----------------------------------------------------------taagctga-aaatgcatttaatcc--------acctaacctac---------taaatgccatagcttaacctagtctaccttaaacatgcttagaacacttacattagtctacaattggtcagaatcatctaacacaaagcctactttataataaagtatggaacatctcatgtaatttatttaattctgtactaaaagtgaaaaacaggatggttgtgtggatacttgcagtat-ggtttctactgaatgtgtatcactt----------------------------------------ttacatcattttaaagtcaaaaaattgtaaattaaaccattgtaagttggagaccat i rheMac8.chr6 I 120 C 0 s macFas5.chr6 87965165 331 - 181584905 atac-------------aatggga----------ttctgacctga----------taaatcctga-----------------------------------------------------------taagctga-aaatgcatttaatcc--------acctaacctac---------taaatgccatagcttaacctagtctaccttaaacatgcttagaacacttacattagtctacaattggtcaaaatcatctaacacaaagcctactttataataaagtatggaacatctcatgtaatttatttaattctgtactaaaagtgaaaaacaggatggttgtgtggatacttgcagtat-ggtttctactgaatgtgtatcactt----------------------------------------ttacatcattttaaagtcaaaaaattgtaaattaaaccattgtaagttggagaccat i macFas5.chr6 I 118 C 0 s macNem1.NW_012011400v1 1192637 331 - 8785636 atac-------------aatggga----------ttctgacctga----------taaatcctga-----------------------------------------------------------taagctga-aaatgcatttaatcc--------acctaacctac---------taaatgccatagcttaacctagtctaccttaaacatgcttagaacacttacattagtctacaatttgtcaaaatcatctaacacaaagcctactttataataatgtatggaacatctcatgtaatttatttaattctgtactaaaagtgaaaaacaggatggttgtgtggatacttgcagtat-ggtttctactgaatgtgtatcactt----------------------------------------ttacatcattttaaagtcaaaaaattgtaaattaaaccattgtaagttggagaccat i macNem1.NW_012011400v1 I 120 C 0 s cerAty1.NW_012002401v1 1656328 330 + 27333823 atac-------------aatggga----------ttctgacctga----------taaatcctga-----------------------------------------------------------taagctga-aaatgcatttaatcc--------acctaacctac---------taaatgccatagcttaacctagtcta-cttaaacatgcttagaacacttacattagtctacaattggtcaaaatcatctaacacaaagcctactttataataaagtatggaacatctcatgtaatttatttaattctgtactaaaagtgaaaaacaggatggttgtgtggatacttgcagtat-ggtttctactgaatgtgtatcactt----------------------------------------ttacatcattttaaagtcaaaaaattgtaaattaaactattgtaagttggagaccat i cerAty1.NW_012002401v1 I 120 C 0 s chlSab2.chr4 1925935 331 - 91010382 atac-------------aatggga----------ttctgacctga----------taaatcctga-----------------------------------------------------------taagctga-aaatgcatttaatcc--------acctaacctac---------taaatgccatagcttaacctagtctaccttaaacatgcttagaacacttacattagtctacaattggtcaaaatcatctaacacaaagcctactttataataaagtatggaacatctcatgtaatttatttaattctgtactaaaagtgaaaaacaggatggttgtgtggatacttgcagtat-ggtttctactgaatgtgtatcactt----------------------------------------ttacatcattttaaagtcaaaaaattgtaaattaaaccattgtaagttggagaccat i chlSab2.chr4 I 120 C 0 s manLeu1.NW_012103732v1 2045358 331 + 5179401 atac-------------aatggga----------ttctgacctga----------taaatcctga-----------------------------------------------------------taagctga-aaatgcatttaatcc--------acctaacctac---------taaatgccatagcttaacctagtctaccttaaacatgcttagaacacttacattagtctacaattggtcaaaatcatctaacacaaagcctactttataataaagtatggaacatctcatgtaatttatttaattctgtactaaaagtgaaaaacaggatggttgtgtggatacttgcagtat-ggtttctactgaatgtgtatcactt----------------------------------------ttacatcattttaaagtcaaaaaattgtaaattaaactattgtaagttggagaccat i manLeu1.NW_012103732v1 I 120 C 0 s colAng1.NW_012115488v1 7748165 331 - 21726897 atac-------------aatggga----------ttctgacctga----------taaatcctga-----------------------------------------------------------taagctga-aaatgcatttaatcc--------acctaacctac---------taaatgccatagcttaacctagtctaccttaaacatgcttagaacacttacattagtctacaattggtcaaaatattctaacacaaagcctactttataataaagtatggaacatctcatgtaatttatttaattctgtactaaaagtgaaaaacaggatggttgtgtggatacttgcagtat-ggtttctactgaatgtgtatcactt----------------------------------------ttacatcattttaaagtcaaaaaattgtaaattaaagcattgtaaattggagaccat i colAng1.NW_012115488v1 I 120 C 0 s calJac3.chr2 112557771 329 + 204313951 atac-------------gatggga----------ttctgacctga----------taaattctga-----------------------------------------------------------taagctga-aaatgcatttaatct--------acctaacctac---------taaataccatagcttagcctagtctactttaaacatgcttagaacacttacattagtctacaaatgggcaaaatcatctaacacaaagcctactttataataaagtatggaaaatctcatgtaatttatttaattctgtactaaaggtaaaaaacaggatgattgtgtggatacttgaagtat-ggtttccactgaatgtgtatcactt------------------------------------------acaccattttaaagtcaaaaaattgtaaattaaactattgtaagttggagaccat i calJac3.chr2 I 111 C 0 s saiBol1.JH378106 45010901 418 + 71252344 TTAC-------------AAATGGAATGTAGTAGTTTCTAAATTGAAAGTGTTTTTAAAAATTTGAATTTAGGAAACTTTTATTTTTCATTAT--Acagattctccttgacatacagtgggattctgacctgataaatcctgttaagttgaaaatgcatttaatctacctaacctactaaataccatagcttagcctagtctactttaaacatgtttagaacacttacattagtctacaattgggcaaaatcatctaacacaaagcctactttataataaagtatggaaaatctcatgtaatttatttaattctatactaaaggtgaaaaacaggatggctgtg--------tgaagtat-ggtttctactgaaagtgtatcactt----------------------------------------tcacaccattttaaagtcaaaaaattgtaaattgaaccattataagttggagaccat i saiBol1.JH378106 I 16 C 0 s cebCap1.NW_016107830v1 370289 332 - 1393929 atac-------------aatggga----------tactgacctga----------taaatcctga-----------------------------------------------------------taaactga-aaatgcatttaatcc--------acctaacctac---------taaataccatagcttagcctagcctactttaaacatgcttagaacacttacattagtctacaattgggcaaaatcatctaacacaaagcctactttataataaagcgtggaaaatcttatgtaatttatttaattctatactaaaggtgaaaaacaggatggttgtgtggatacctgaagtatgggtttctactgaatgtgtatcactt----------------------------------------ttacaccattttaaagtaagaaaattgtaaattaaaccattataagttgaagaccat i cebCap1.NW_016107830v1 I 114 C 0 s aotNan1.NW_018506370v1 1442693 371 - 15889662 atac-------------aatggga----------ttctgacctga----------taaatcctga-----------------------------------------------------------taagctga-aaatgcatttaatcc--------acctaacctac---------taaataccatagcttagcctagtctactttaaacatgcttagaacacttacattagtccacaactgggcaaaatcatctaacacaaagcctactttatactaaagtatggaaaatctcatgtaatttatttaattctgtactaaaggtgaaaaacaggatggttgtgtggatacttgaagtat-ggtttctactgaatgtgtatcacttttacaccattttattttttttattttttttattttttattttacaccattttaaagtcaaaaaattgtaaattaaaccatcataagttggagaccat i aotNan1.NW_018506370v1 I 112 C 0 s otoGar3.GL873536 1324474 395 - 29863360 AAACTTTATTGGTTAAAAATGGAA-TGCAGTAATTTCTAAGTTAA-AGGCttttttaatttttaa--------aacatttatttttaattattaatataaatGCattg----------------taaattga-gaatgcatttaatcc--------acctaagctac---------tgaatattaaaacttagcataatctgtctgaaaagtgctcagaacacttatattaccctagagttgggcaaaataacctaacacagaacctattttagaata--gtgttgaatatctcatgtaatttatgtaatactgtactaaaattgaacagcagaatagttgtaagggtacttaaaatac-agtttctattaaatgcatgtcactt----------------------------------------ttataccattgtaaagttgaaaaactgtaggtcagaccattgtaagtcagggatcat i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14334072 443 + 91889043 I e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1263346 184 - 11655695 I e mm10.chr13 76479646 2004 + 120421639 I a score=934829.000000 s hg38.chr5_GL383530v1_alt 72810 89 + 101241 ctgTATAAGTAATATGGAAATTCATTATTTTTACAGCAATAAAGTAATGAGAACAGAGAAAGTTTCCATAAATGCTATCCTCAATCCTA s panTro5.chr5 20306720 89 + 181907262 ctgTATAAGTAATATGGAAATTCATTATTTTTACAGCAATAAAGTAATGAGAACAGAGAAAGTTTCCATAAATGCTATCCTCAATCCTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20319050 89 + 183735486 ctgTATAAGTAATATGGAAATTCATTATTTTTACAGCAATAAAGTAATGAGAACAGAGAAAGTTTCCATAAATGCTATCCTCAATCCTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4805699 89 - 13748885 ctgTATAAGTAATATGGAAATTCATTATTTTTACAGCAATAAAGTAATGAGAACAGAGAAAGTTTCCGTAAATGCTATCCTCAATCCTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53837580 89 - 163208435 ctgTATAAGTAATATAGAAATTCATTATTTTTACAGCAATAAAGTAATGAGAACAGAGAAAGCTTCCATAAATGCTATTCTCAATCCTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87861072 87 - 180051392 ctgTATAAGTAATATAGAAATTCATTATTTTTATAGCAATAAAGTAATGAGAACAA--AAAGTTTCCTTAAATGCTATCCTCAATCCCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87965496 87 - 181584905 ctgTATAAGTAATATAGAAATTCATTATTTTTATAGCAATAAAGTAATGAGAACAA--AAAGTTTCCTTAAATGCTATCCTCAATCCCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1192968 87 - 8785636 ctgTATAAGTAATATAGAAATTCATTATTTTTATAGCAATAAAGTAATGAGAACAA--AAAGTTTCCTTAAATGCTATCCTCAATCCCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1656658 87 + 27333823 ctgTATAAGTAATATAGAAATTCATTATTTTTATAGCAATAAAGTAATGAGAACAA--AAAGTTTCCTTAAATGCTATCCTCAATCCCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1926266 89 - 91010382 ctgTATAAGTAATATATAAATTCATTATTTTTACAGCAATAAAGTAATGAGAACAAAGAAAGTTTCCTTAAATGCTATCCTCAATCCCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2045689 87 + 5179401 ctgTATAAGTAATATAGAAATTCATTATTTTTATAGCAATAAAGTAATGAGAACAA--AAAGTTTCCTTAAATGCTATCCTCAATCCCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7748496 89 - 21726897 ctgTATAAGTAATATAGAAATTCATTATTTTTACAGCAATAAAGTAATGAGAACAAAGAAAGTTTCCTTAAATGCTATCCTCAATCCCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112558100 83 + 204313951 ctgTATAAGTAATATGGAAATTCA-TATTTTTACAGAAA-----TAATGAGAACAGAGAAAATTTCCCTAAATGCTACCCTCAATCCCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45011319 82 + 71252344 ctgTATAAGTAATGTAGAAATTCA-TATTTTTACAGAAATAAAGTAATGAGAACAG------TTTCCTTAAATGCTATCCTCAATCCCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 370621 83 - 1393929 cAGTATAAGTAATATAGAAATTCA-TATTTTTACAGAAA-----TAATGAGAACAGAGAAAGTTTCCTTAAATGCTACCCTCAATCCCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1443064 88 - 15889662 ctgTATAAGTAATATAGAAATTCA-TATTTTTACAGAAATGAAGTAATGAGAATAGAGAAAGTTTCATTAAATGCTACCCTCAATCCCA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1324869 83 - 29863360 ctgTATAAATAATATAGAAATTCATTATTTTTATGGCAATGAAAAAGGGACA------AAGTTTCCCTTGATTTTTACCCTCAATTCCA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14334515 88 + 91889043 CTATACAAGTAATGTAGACATTCATTATTTTTGTAGAAATAAGTAAATGGGACAGCTAAAGGTTCCTTTGAATTCT-TCCCTAGTCCCA i canFam3.chr3 I 443 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1263346 184 - 11655695 I e mm10.chr13 76479646 2004 + 120421639 I a score=736203.000000 s hg38.chr5_GL383530v1_alt 72899 85 + 101241 ATCTCTATGCatttagatatgcatttacatatatatttatgtgtgtgtgcatatatgtatatatacacacacatatatatgtata s panTro5.chr5 20306809 85 + 181907262 GTCTCTATGCatttagatatgcatttacatatatatttatgtgtgtgtgcatatatgtatatatacacacacatatatatgtata i panTro5.chr5 C 0 C 0 s panPan2.chr5 20319139 85 + 183735486 ATCTCTATGCatttagatatgcatttacatatatatttatgtgtgtgtgcatatatgtatatatacacacacatatatatgtata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4805788 85 - 13748885 ATCTCTATGCatttagatatgcatttacatatatatttatgtgtgtgtgcatatatgtatatatacacacacatatatatgtata i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53837669 85 - 163208435 ATCTCTATGCatttagatatgcatttacatatatatttatgtgtgtgtgcatatatgtatatatacacacacatatatatGTGTA i nomLeu3.chr2 C 0 M 708 s rheMac8.chr6 87861159 85 - 180051392 ATCTCTATGCatttagatatgcatttatatatatatttatgtgtgtgtgcatatatgtatagatacacacacacatatatatgta i rheMac8.chr6 C 0 I 2 s macFas5.chr6 87965583 85 - 181584905 ATCTCTATGCatttagatatgcatttacatatatatttatgtgtgtgtgcatatatgtatagatacacacacacatatatatgta i macFas5.chr6 C 0 I 2 s macNem1.NW_012011400v1 1193055 85 - 8785636 ATCTCTATGCatttagatatgcatttacatatatatttatgtgtgtgtgcatatatgtatagatacacacacacatatatatgta i macNem1.NW_012011400v1 C 0 I 2 s cerAty1.NW_012002401v1 1656745 85 + 27333823 ATCTCTATGCatttagatatgcatttacatatatatttatgtgtgtgtgcatatatgtatagatacacacacacatatatatgta i cerAty1.NW_012002401v1 C 0 I 2 s chlSab2.chr4 1926355 85 - 91010382 ATCTCTATGCatttagatatgcatttacatatatatttatgtgtgtgtgcatatatgtacagatacacacacatatatatatgta i chlSab2.chr4 C 0 I 2 s manLeu1.NW_012103732v1 2045776 85 + 5179401 ATCTCTATGCatttagatatgcatttacatatatatttatgtgtgtgtgcatatatgtatagatacacacacacatatatatgta i manLeu1.NW_012103732v1 C 0 I 2 s colAng1.NW_012115488v1 7748585 85 - 21726897 ATCTCTATGCatttagatatgcatttacatatatatttatatgtgtgtgcatatatgtatagatacacacacacatatatatgta i colAng1.NW_012115488v1 C 0 I 2 s calJac3.chr2 112558183 57 + 204313951 ATCTCTATGCATTTAGatatgcatttacatatatatcta--tgtgtgt--atatatgtata------------------------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45011401 59 + 71252344 ATCTCTATGCATTTAGatatgcatttacatatatatctatgtgtgtgt--atatatgtata------------------------ i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 370704 59 - 1393929 ATCTCTATGCatttagatatgcatttacatatatatctatgtgtgtgt--atatatgtaga------------------------ i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1443152 59 - 15889662 ATCTCTATGCATTTAGATACGCatttacatatatatctgtgtgtgtgt--atatatgtata------------------------ i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1324952 69 - 29863360 ATCTCTATGCATTTAGATATGTGTGTAGATAAgtgtgtgtgtgtgtgtgtgtgtgtgtgtg----------------tgtgtgtc i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14334603 0 + 91889043 C e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1263346 184 - 11655695 I e mm10.chr13 76479646 2004 + 120421639 I a score=75580.000000 s hg38.chr5_GL383530v1_alt 72984 9 + 101241 taggtatgt-- s panTro5.chr5 20306894 9 + 181907262 taggtatgt-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20319224 9 + 183735486 taggtatgt-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4805873 9 - 13748885 taggtatgt-- i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87861246 9 - 180051392 taggtatgt-- i rheMac8.chr6 I 2 C 0 s macFas5.chr6 87965670 9 - 181584905 taggtatgt-- i macFas5.chr6 I 2 C 0 s macNem1.NW_012011400v1 1193142 9 - 8785636 taggtatgt-- i macNem1.NW_012011400v1 I 2 C 0 s cerAty1.NW_012002401v1 1656832 9 + 27333823 taggtatgt-- i cerAty1.NW_012002401v1 I 2 C 0 s chlSab2.chr4 1926442 9 - 91010382 taggtatgt-- i chlSab2.chr4 I 2 C 0 s manLeu1.NW_012103732v1 2045863 9 + 5179401 taggtatgt-- i manLeu1.NW_012103732v1 I 2 C 0 s colAng1.NW_012115488v1 7748672 9 - 21726897 taggtatgt-- i colAng1.NW_012115488v1 I 2 C 0 s calJac3.chr2 112558240 9 + 204313951 taggtatat-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45011460 9 + 71252344 taggtatat-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 370763 9 - 1393929 taggtatat-- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1443211 9 - 15889662 taggtatat-- i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1325021 9 - 29863360 --tgtACAGTC i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14334603 0 + 91889043 C e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1263346 184 - 11655695 I e mm10.chr13 76479646 2004 + 120421639 I e nomLeu3.chr2 53837754 708 - 163208435 M a score=3840555.000000 s hg38.chr5_GL383530v1_alt 72993 366 + 101241 aagtcagccctctgtatccgtggattccgcatctgtgaaatcaaagagccatggatcaaaaatactcttaaaaaaccttgtgtctgtactaaacacgtacagaca-tttttttcttgtcattattccctaaacaatagagtataacaactatttacat-gtgtttacattatattaggtattatgtgtaatctagagatgatgtcaagtacgtaggagaatg-------------------------tacacggattatatgtaaatactacactgttttgtatcaggcacttgagcatctgtagattttggtatctgtgggaggaactggaaccaatcccacgtggataccaagggacaactctatatgcatgcatat--atggataaagagag s panTro5.chr5 20306903 363 + 181907262 aagtcagccctctgtatccgtggattccgcatctgtgaaatcaaagagccatggatcaaaaatactctttaaaaaccttgtgtctgtactaaacacatacagaca-tttttttcttgtcatt---ccctaaacaatagagtataacaactatttacat-gtgtttacattatattaggtattatgtgtaatctagagatgatgtcaagtacgtaggagaatg-------------------------tgcacggattatatgtaaatactacactgttttgtatcaggcacttgagcatctgtagattttggtatctgtgggaggaactggaaccaatcccacgtggataccaagggacaactctatatgcatgcatat--atggataaagagag i panTro5.chr5 C 0 C 0 s panPan2.chr5 20319233 363 + 183735486 aagtcagccctctgtatccgtggattccgcatctgtgaaatcaaagagccatggatcaaaaatactctttaaaaaccttgtgtctgtactaaacacatacagaca-tttttttcttgtcatt---ccctaaacaatagagtataacaactatttacat-gtgtttacattatattaggtattatgtgtaatctagagatgatgtcaagtacgtaggagaatg-------------------------tacacggattatatgtaaatactacactgttttgtatcaggcacttgagcatctgtagattttggtatctgtgggaggaactggaaccaatcccacgtggataccaagggacaactctatatgcatgcatat--atggataaagagag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4805882 361 - 13748885 aagtcagccctctgtat-cgtggattccgcatctgtgaaatcaaagagccatggatcaaaaatactcttaaaaaaccttgtgtctgtactgaacacatacagaca-tttttttcttgtcatt---ccctaaacaatagagtataacaactatttacat-gtgtttacattatattaggtattatgtataatctagagatgatgtcaagtacgta-gagaatg-------------------------tacacggattatatgtaaatactacactgttttgtatcaggcacttgaacatctgtagattttggtatctgtgggaggcactggaaccaatcccacgtggataccaagggacaactctatatgcatgcatat--atggataaagagag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53838465 366 - 163208435 Aagtcagccctctgtatctgtggattctgcatctgtgaattcaaagagccatggatcaaaaatattcttaaaaaagcttgtgtctgtactaaacatgtacagaca-tttttttcttgtcattattccctaaacaatagagtataacaactatttacat-gtgtttacattgtgttaggtattatatgtaatctggagatgatgtcacatacgtaggagaaca-------------------------tacacggattatatgtaaatactacactgttttgtatcaggcacttgagcatctgtagattttggtatctgtgggaggcactggaaccaatcccacgtggataccaagggacaactgtatatgcatgcatat--atggataaagaaag i nomLeu3.chr2 M 708 C 0 s rheMac8.chr6 87861255 366 - 180051392 aagtcagccctctgtatccatggattccgcatctgtgaattcaaagagtcatggatcaaaaatactcttaaaaaaccttgtgtctgtactaaacacgtacagaca-tatttttcttgtcattattcccgaaacaatagagtataacaactatttacat-gtgtttacattatattaggtattatatgtaatctccagatgatttcaagtacgtaggaggaca-------------------------tacacagattatatgcaaatactacactgttttatatcaggcacttgagcatctgtagattttggtatctgtgggaggtactggaaccaatcccacatggataccaagggacaactctatatgcatgcatat--atggataaagagag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87965679 366 - 181584905 aagtcagccctctgtgtccatggattccgcatctgtgaattcaaagagtcatggatcaaaaatactcttaaaaaaccttgtgtctgtactaaacacgtacagaca-tatttttcttgtcattattcccgaaacaatagagtataacaactatttacat-gtgtttacattatattaggtattatatgtaatctccagatgatttcaagtacgtaggaggaca-------------------------tacacagattatatgcaaatactacactgttttatatcaggcacttgagcatctgtagattttggtatctgtgggaggtactggaaccaatcccacatggataccaagggacaactctatatgcatgcatat--atggataaagagag i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1193151 366 - 8785636 aagtcagctctctgtatccatggattccgcatctgtgaattcaaagagtcatggatcaaaaatactcttaaaaaaccttgtgtctgtactaaacacgtacagaca-tatttttcttgtcattattcccgaaacaatagagtataacaactatttacat-gtgtttacattatattaggtattatatgtaatctccagatgatttcaagtacgtaggaggaca-------------------------tacacagattatatgcaaatactacactgttttatatcaggcacttgagcatctgtagattttggtatctgtgggaggtactggaaccaatcccacatggataccaagggacaactctatatgcatgcatat--atggataaagagag i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1656841 366 + 27333823 aagtcagccctctgtatccatggattccgcatctgtgaattcaaagagtcatggatcaaaaatactctttaaaaaccttgtgtctgtactaaacacatacagaca-tatttttcttgtcattattcccaaaacaatagagtataacaactatttacat-gtgtttacattatattaggtattatatgtaatctccagatgatttcaagtacgtaggaggaca-------------------------tacacagattatatgcaaatactacactgttttatatcaggcacttgagcatctgtagattttggtatctgtgggaggtactggaaccaatcccacatggataccaagggacaactctatatgcatgcatat--atggataaagagag i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1926451 366 - 91010382 aagtcagccctctgtatccatggattccgcatctgtgaattcaaagagtcatggatcaaaaatactcttaaaaaaccttgtgtctgtactaaacatgtacagaca-tatttttcttgtcattattcccgaaacaatagagtatagcaactatttacat-gtgtttacattatattaggtattatatgtaatctccagatgatttcaagtacgtaggaggaca-------------------------tacacagattatatgcaaatactacactgttttatatcaggcacttgagcatctgtagattttggtatctgtgggaggtactggaaccaatcccacatggataccaagggacaactctatatgcatgcatat--atagataaagagag i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2045872 366 + 5179401 aagtcagccctctgtatccatggattccgcatctgtgaattcaaagagttatggatcaaaaatactctttaaaaaccttgtgtctgtactaaacacatacagaca-tatttttcttgtcattattcccaaaacaatagagtataacaactatttacat-gtgtttacattatattaggtattatatgtaatctccagatgatttcaagtacgtaggaggaca-------------------------tacacagattatatgcaaatactacactgttttatatcaggcacttgagcatctgtagattttggtatctgtgggaggtactggaaccaatcccacatggataccaagggacaactctatatgcatgcatat--atggataaagagag i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7748681 364 - 21726897 aagtcagccctctgtatccaaggattccgcatctgtgaattc--agagtcatggatcaaaaatactcttaaaaaaccttgtgtctatactaaacacgtacagaca-tatttttcttgtcattattcctgaaacaatagagtataacaactatttacat-gtgtttacattatattaggtattatatgtaatctcgagatgatttcaagtacgtaggaggata-------------------------tgcacagattatatgcaaatactacactgttttatatcaggcacttgagcatctgtagattttggtatctgtgggaggtactggaaccaatcccacatggataccaagggacaactctatatgcatgcatat--atggataaggagag i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112558249 366 + 204313951 aagtcagccctctgtatctgttgattctgcatctgtgaattcaaagacccatggatcaaaaatattcttagaaaaccttatgtctatactgaacatgtacagaca-tttttttcttgtcattattccctaaacaatagagtataacaactctttacat-gagtttacattatattagatattttatataatatgaaaatgatttcaagtatgtaggagaaca-------------------------tacataggttatatgcaaatactacactattttctattagggacttaagcatctgtggattttggtatctgtgggaggtactggaaccaatcccacatggataccaagggacaattctatatgcacaaatat--gtggataaagagag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45011469 368 + 71252344 aagtcagccctctgtatctgttgattctgcatctgtgaattcaaagactcatggatcaaaaatattcttagaaaaccttatgtctatactgaacatgtacagaca-tgtttttcttgtcattattccctaaacaatagagtataacaacactttacat-gagtttacattatattagatattttatgtaatctggagatgatttcaagtatgtaggagaaca-------------------------tacataggttatatgcaaatactacactattttctatcagggacttgagcatctgtggattttggtatctgtgggaggtactggaactaatcccacatggatactaagggacaattCTATATGCACAAATATAAATGGATAAAGAGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 370772 366 - 1393929 aagtcagccctctgtatctgttgattctgcatctgtgaattcaaagacccatggatcaaaaatactcttagaaaaccttatgtctatactgaacatgtacagaca-tttttttcttgtcattattccctaaacaatagagtataacaactctttacat-gagtttacattatattagatattttatgtaatctggagatgatttcaagtatgtaggagaaca-------------------------tacataggttatatgcaaatactacactattttctattagggacttgagcatctgtgaattttggtatctgtgggaggtactggaaccaatcccacatggataccaagggacaattctatgtgcacaaatat--atggataaagagag i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1443220 367 - 15889662 aagtcagccctctgtatctgttgattctgcatctgtgaattcaaagactcatggatcaaaaatattcttaggaaaccttatgtctatactgaacatgtacagacctttttttttttgtcattattccctaaacaatagagtataacaactctttacat-gagtttacattatattagatattttatgtaatctggagaagatttcaagtatgtaggagaaca-------------------------tacctaggttatatgtaaatactacactattttctatcagggacttgagcatctgtggattttggtatctgtgggaggtactggaaccaatcccacatggataccaagggacaattctatatgcaaaaatat--atggataaagagag i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1325030 386 - 29863360 AGgtcagccctccttatatgtgggttctgcatctgttcatttaatcaaccatgaatcaaaaatatt-tgaaaaataattttgtctgttttgaatatgtacagata-t-tttttcttgtcattattacctaaacaa-atggcatagtaactatttatatagcatttacattgtattagg-attattagtaatctagagatggcttcaagcatatgggaagatgcaaatacaataggatgcaaatgaactacgtaagttatatgcaaataccatgctattttacatcaaggactggagcatccttggattttggcataccagggagat-ctcaaacaaatccaccacggaaactcagagatgattTTAGATGCATATATAC--ATATATGGATGGA- i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14334603 0 + 91889043 C e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e dasNov3.JH570378 1263346 184 - 11655695 I e mm10.chr13 76479646 2004 + 120421639 I a score=217440.000000 s hg38.chr5_GL383530v1_alt 73359 27 + 101241 ctatgtacataaatata-atatagagag s panTro5.chr5 20307266 27 + 181907262 ctatgtacataaatata-atatagagag i panTro5.chr5 C 0 C 0 s panPan2.chr5 20319596 22 + 183735486 ctatgtacat-----ta-atatagagag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4806243 27 - 13748885 ctatgtacataaatata-atatagagag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53838831 20 - 163208435 tgatgtacataaatat--------agag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87861621 27 - 180051392 ctatgtacataaatata-atatagagag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87966045 27 - 181584905 ctatgtacataaatata-atatagagag i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1193517 27 - 8785636 ctatgtacataaatata-atatagagag i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1657207 27 + 27333823 ctatgtacataaatata-atatagatag i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1926817 27 - 91010382 ctatgtacataaatata-atatagagag i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2046238 27 + 5179401 ctatgtacataaatata-atatagatag i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7749045 27 - 21726897 ctatgtacataaatata-atgtagagag i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112558615 27 + 204313951 atatgtacataagtata-atataaagag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45011837 27 + 71252344 ATATGTACATAAGTGTA-ATATAAAGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 371138 27 - 1393929 atgtgtacataagtata-atataaagag i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1443587 27 - 15889662 atatgtacataagtata-atataaagag i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1325416 7 - 29863360 ---------------------TAAAGAG i otoGar3.GL873536 C 0 C 0 s dasNov3.JH570378 1263530 28 - 11655695 CTGTGCACTTAAACCTGTATGTATGTGA i dasNov3.JH570378 I 184 C 0 e canFam3.chr3 14334603 0 + 91889043 C e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I a score=3574884.000000 s hg38.chr5_GL383530v1_alt 73386 331 + 101241 atatctacaaa-aacttatgtatatatgtatatatCTCTCCTTTGtatgcatatgtg--tatatata------------------------------tgtgatttggtgtgagtg-tg----tgatg-ttctacacagttgatgttttatcatacatttttagcaatttgattttttttcattaatatgtcgtagagatctt-actgtgttagtccatacagattgacctcattgtcaattcgtaggctaaacaggatacctatttagctat--tgctcaattgatgatgatctatgttgcttccagcttttgct-tttac-aaatata--ctgcactgaacatccttgtacatgcttcatcatgcccacctaagtg s panTro5.chr5 20307293 331 + 181907262 atatctataaa-aacttatgtatatatgtatatatCTCTCCTTTGtatgcatatgtg--tatatata------------------------------tgtgatttggtgtgagtg-tg----tgatg-ttctacacagttgatgttttatcatacatttttagcaatttgattttttttcattaatatgtcgtagagatctt-actgtgttagtccatacagattgacctcattgtcaattcataggctaaacaggatacctatttagctat--tgctcaattgatgatgatctatgttgcttccagcttttgct-tttac-agatata--ctgcactgaacatccttgtacatgcttcatcatgcccacctaagtg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20319618 331 + 183735486 atatctataaa-aacttatgtatatatgtatatatCTCTCCTTTGtatgcatatgtg--tatatata------------------------------tgtgatttggtgtgagtg-tg----tgatg-ttctacacagttgatgttttatcatacatttttagcaatttgattttttttcattaatatgtcgtagagatctt-actgtgttagtccatacagattgacctcattgtcaattcataggctaaacaggatacctatttagctat--tgctcaattgatgatgatctatgttgcttccagcttttgct-tttac-agatata--ctgcactgaacatccttgtacatgcttcatcatgcccacctaagtg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4806270 331 - 13748885 atatctataaa-aacttatgtatatatgtatatatCTCTCCTTTGtatgcatatgtg--tatatata------------------------------tgtgatttggtgtgagtg-tg----tgatg-ttctacacagttgatgttttatcatacatttttagcaatttgattttttttcattaatatgttgtagagatctt-actgtgttagtccatacagattgacctcattgtcagttcataggctaaacaggatacctatttagctat--tgctcaattgatgatcatctatgttgcttccagcttttgct-tttac-aaaaata--ctgcactgaacatccttgtacgtgcttcatcatgcccacctaagtg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53838851 330 - 163208435 agatctacaaa-aacttatgtatatatgtatatatCTCTCCTTTGtatgtatatgtg--tacatata------------------------------tgtgatttggtgtgagtg-tg----tgata-ttctacacagttgatgttttatcatacatttttagcaatttga-tttttttcattaatgtgtcatagagatctt-actgtgttagtccatacagattgacctcattgtcaattcgtaggctaaacaggatacctatttaactgt--tgctcaattgatgatcatctatgttgcttccagcttttgct-tttac-aaaaata--ctgcactgaacatccttgtacatacttcatcatgcccacctaagtg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87861648 328 - 180051392 atatctataaa-aacttgtgtatatatgtgtgtatctctcttttatatgtatgtgtg--tatatata------------------------------tgtgatttggtgtgagtgatg----t-----TTCCACACAGTTGATGTTTTATCATACATTTTTAAcaatttgattttttttcattaatatgtcttagagatctt-actgtgttagttcatacagattgacctcattgtgaattcgtaggctaaacaggatacctatttaactgt--tgcttaattgatgatcatctatgttgcttccagcttttgct-cttac-aacaata--ctgcattgaacatccttgtacatgcttcattgtgcctacctaagtg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87966072 328 - 181584905 atatctataaa-aacttgtgtatatatgtgtgtatctctcttttatatgtatgtgtg--tatatata------------------------------tGTGATTTGGtgtgagtgatg----t-----ttctacacagttgatgttttatcatacatttttaacaatttgattttttttcattaatatgtcttagagatctt-actgtgttagttcatacagattgacctcattgtgaattcgtaggctaaacaggatacctatttaactgt--tgcttaattgatgatcatctatgttgcttccagcttttgct-cttac-aacaata--ctgcattgaacatccttgtacatgcttcattgtgcccacctaagtg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1193544 330 - 8785636 atatctataaa-aacttgtgtatatatgtgtgtatctctcttttatatgtatgtgtgtatatatata------------------------------tGTGATTTGGtgtgagtgatg----t-----ttctacacagttgatgttttatcatacatttttaacaatttgattttttttcattaatatgtcttagagatctt-actgtgttagttcatacagattgacctcattgtgaattcgtaggctaaacaggatacctatttaactgt--tgcttaattgatgatcatctatgttgcttccagcttttgct-cttat-aacaata--ctgcattgaacatccttgtacatgcttcattgtgcccacctaagtg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1657234 328 + 27333823 atatctataaa-aacttgtgtatatatgtatgcatctctcttttatatgtatgtgtg--tatatata------------------------------tGTGATTTGGtgtgagtgatg----t-----ttctacacagttgatgttttatcatacatttttaacaatttgattttttttcattaatatgtcttagagatctt-actatgttagttcatacagattgacctcattgtgaattcgtaggctaaacaggatacctatttaactgt--tgcttaattaatgatcatctatgttgcttccagcttttgct-cttac-aacaaaa--ctgcattgaacatccttgtacatgcttcattgtgcccacctaagtg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1926844 328 - 91010382 atatctataaa-aacttgtgtatatttgtatgtatctctcttttatatgtgtgtgtg--tatatata------------------------------tGTGATTTAGtgtgagtgatg----t-----ttctacacagttgatgttttatcatacattgttaacaatttgattttttttcattaatatgtcttagagatctt-actgtgttagttcatacagagtgacctcattgtgaattcgtaggctaaacaggatacatatttaactgt--tgcttaattgatgatcatctatgttgcttccagcttttgct-cttac-aacaata--ctgcattgaacatccttgtagatgcttcattgtgcccacctaagtg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2046265 328 + 5179401 atatctataaa-aacttgtgtatatatgtatgcatctctcttttatatgtatgtgtg--tatatata------------------------------tGTGATTTGGtgtgagtgatg----t-----ttctacacagttgatgttttatcatacatttttaacaatttgattttttttcattaatatgtcttagagatctt-actatgttagttcatacagattgacctcattgtgaattcgtaggctaaacaggatacctatttaactgt--tgcttaattaatgatcatctatgttgcttccagcttttgct-cttac-aacaata--ctgcattgaacatccttgtacatgcttcattgtgcccacctaagtg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7749072 327 - 21726897 atatctacaaa-aacttgtgtatatatgtatgtatctctcttttatatgtatgtgtg--tatatata------------------------------tgtgatttgatgtgagtgatg----t-----TTCTACACGGTTGATGTTTTATCATACATTTTTAgcaatttga-tttttttcattagtatgtcttagagatctt-gctgtgttagttcatacagattgacctcattgtcaatttgtaggctaaacaggatacctatttaactgt--tgcttaattgaggatcatctatgttgcttccagcttttgct-cttac-aacaata--ctgcattgaacatccttgtatgtgcttcattgtgcccacctaagtg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112558642 325 + 204313951 atatgtactaa-aatatatgtatatatgtatgtatCTCTTTTTTGTATGTATGTGTG--TATATATA------------------------------CGTGATTTGGTGTGAATG-TG----TGATGTTTCTGCACAATGTATGTCTTATCATACATTTTTAGCAATTTTATTTT------TTATTATGTTTTACAGACCTT-ACTGTGTTAGCCCATATAGATTGACCTCATTGTCAATTTGTAGGCTAAACAGGGTACCtatttaactat--tgctcaactgatgatcatctatgttgcttccgg-ttttgct-cttac-aacaata--ctgcattgggcatccttgtacatgcttcatcatgcctacctaaggg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45011864 326 + 71252344 ATATGTACTAA-Aatatatgcatatatgtatgtatctcttgtttgtatgtacgtgtg--tatatata------------------------------catgACTTGGTGTGAAtg-tg----tgatgtttctgcacaaatgatgttttatcatacatttttagcaatttgattttttt--attaatatatcttacagatctt-actgtgttagtccatacagattgacctcattgtcagtttgtaggctaaacaggatacctatttaattat--tgctcaattgatgatcatctatgttgcttccagtttttgcc-cttac-aacaata--ctgcattgaacatccttgtacatgcttcatcatgcctaagtg---- i saiBol1.JH378106 C 0 I 226 s cebCap1.NW_016107830v1 371165 331 - 1393929 atatgtactaa-aatatatgtatatatgtaCGTATCTCTTTTTTGtatgtacacgtg--tatatata------------------------------cgtgatttggtgtgaaca-tg----tgatgtttctgcacaattgatgttttatcatacatttttaacaatttgattttttta-attaatatgtcttatagatctt-actgtgttaatccatacagattgacctcattgtcaattcataggctaaacaggatacctatttaactat--tgctcaactgatgatcatctatgttgcttccagtttttgct-cttac-aacaata--ctgcattgaacatctttgtacatgcttcattatgcctacctaagtg i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1443614 329 - 15889662 atatgtactaa-aatatatgtatatatgtatgtatCTCTTTTTTGtatgtacgtgtg--tatatata------------------------------catgatttagtgtgaatg-tg----tgatgtttctgcagaattgatgttttaccatacatttttagcaatttgatttttttt-attaatatgtcttacagatctt-actgtgttagtccatacagattgacgtcattgtcaatttgtaggctaaacagg--acctatttaactat--cgctcaattgacgatcatctatgttgcttctggtttttgct-cttac-aacaata--ctacattgaacatccttgtacatgcttcatcatgcctacctaagtg i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1325423 285 - 29863360 ATTCTTATAGA-AATACATA-ATGTGTGCACATATGTC-------TATGTATGTGCA--CAtgtgtg------------------------------tgtga--------------tg----t-----ttctacacaatcggtgtattactatacattcccggcaacttga-cttttttcattgacatgttttggagagc---------ttagcacccacattgttacctcattgtt----------ttgaacaggatccctacttatcagccatttttagttgatagtcatttctgttgtttccagtgtttgct-ctcac-ag---ta--ctatattaaagatcttcatac-cgcatcaccatgcctgcctgtgtg i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14334603 351 + 91889043 ATCTCTACACGTGACATATGCATATATATGTAT------------TATGTATATGTG-GTATACATAATGACAGAGAGATCTCTACATAAGTGCATTTGTGGCTGCAtgtgagtg-tg----tgatatttctacataattgatgtcttactatgcatattgcacaacttgg-ttcttttcattaatatgtgttagagatctt-ggtatattagtccttaaagatttacctcattgtt--tttaactgctgcaccagatccctatttaactac--tgtctgatggacgatcatttattttgcttccagcttttgct-cttcc-acctgtagtctgcattgaaccttttggggcatgcttcattgtgctcactgatgtg i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1263558 320 - 11655695 ATATATACATA-TATGAATAGATAAAGAGAGACATCCC-------------Tacata--aatacata------------------------------tatgattgagt-tgactg-tggttttgatgtttctatataattgttatcttactatacatattcttcaacttga--tcttttcattaacatatctcagagatcttaactgtgttggcccatttagattaacctcagtat---tttaacagctacacaggatccctatttaactct--tgctcagtggacgatcatttctgttgattccagctttttccacttacgaacaaca--ctgctttgagtatactttttcatgtttcatggtacccatctgtgtg i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I a score=2232581.000000 s hg38.chr5_GL383530v1_alt 73717 178 + 101241 gggatttctatagaataaacgctg-aatagtcaga-----t-----tattatgggttatacaatgtttaggttttcttagatacttctaaactgcTAAATTAATTTGTT--TA-GCAGATATAATCTT-ATCAGTATTACAAAGTATTAAATCTTAACAAGTTGGCTTTGTGAAAAATAACTTGTTTTTGCTC s panTro5.chr5 20307624 178 + 181907262 gggatttctatagaataaacgctg-aatagtcaga-----t-----tattatgggttatacaatgtttaggttttcttagatacttctaaactgcTAAATTAATTTGTT--TA-GCAGATATAATCTT-ATCAGTATTACAAAGTATTAAATCTTAACAAGTtggctttgtgaaaaataacttgttcttgctc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20319949 178 + 183735486 gggatttctatagaataaacgctg-aatagtcaga-----t-----tattatgggttatacaatgtttaggttttcttagatacttctaaactgcTAAATTAATTTGTT--CA-GCAGATATAATCTT-ATCAGTATTACAAAGTATTAAATCTTAACAAGTtggctttgtgaaaaataacttgttcttgctc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4806601 178 - 13748885 gggatttctatagaataaacgctg-aatagtcaga-----t-----tattatgggctatacaatgtttaggttttcttagatacttctaaactgcTAAATTAATTTGTT--TA-GCAGATATAATCTT-ATCAGTATTACAAAGTATTAAATCTTAACAAGTGGGCTTCATGAAAAATAACTTGTTCTTGCTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53839181 178 - 163208435 gggatttctatagaataaacagtg-aatagtcaga-----c-----tattatgggttatacaatgtttaggttttcttagatacttctaaactgcTAAATTAATTTGTT--TA-GCAAATATAATCTT-ATCAGTATTACAAAGTATTAAATCTTAACAAGTGggctttgtgaaaaataacttgttcttgctc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87861976 178 - 180051392 gagatttctatagaataaacactg-aatagtcaga-----t-----tattatgggttatac-atgtttaggttttcttagatacttctaaactgcTAAATTAATTTGTT--TAGGTAGATATAATCTT-ATCAGTATTACAGAGTATTAAATCTTAACAAGTGggctttgtgaaaaataacttgttcttgctc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87966400 178 - 181584905 gagatttctatagaataaacactg-aatagtcaga-----t-----tattatgggttatac-atgtttaggttttcttagatacttctaaactgcTAAATTAATTTGTT--TAGGTAGATATAATCTT-ATCAGTATTACAGAGTATTAAATCTTAACAAGTGggctttgtgaaaaataacttgttcttgctc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1193874 178 - 8785636 gagatttctatagaataaacactg-aatagtcaga-----t-----tattatgggttatac-atgtttaggttttcttagatacttctaaactgcTAAATTAATTTGTT--TAGGTAGATATAATCTT-ATCAGTATCACAGAGTATTAAATCTTAACAAGTGggctttgtgaaaaataacttgttcttgctc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1657562 178 + 27333823 gagatttctatagaataaacactg-aatagtcaga-----t-----tattatgggttatac-atgtttaggttttcttagatacttctaaactgcTAAATTAATTTGTT--TAGGTAGATATAATCTT-ATCAGTATTACAGAGTATTAAATCTTAACAAGTGggctttgtgaaaaataacttgttcttgctc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1927172 178 - 91010382 gagatttctatagaataaacactg-aatagtcaga-----t-----tattatgggttatac-atgtttaggttttcttagatacttctaaactgcTAAATGAATTTGTT--TAGGTAGATATAATCTT-ATCAGTATTACAGAGTATTAAATCTTAACAAGTGggctttgtgaaaaataacttgttcttgctc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2046593 178 + 5179401 gagatttctatagaataaacactg-aatagtcaga-----t-----tattatgggttatac-atgtttaggttttcttagatacttctaaactgcTAAATTAATTTGTT--TAGGTAGATATAATCTT-ATCAGTATTACAGAGTATTAAATCTTAACAAGTGggctttgtgaaaaataacttgttcttgctc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7749399 178 - 21726897 gagatttctatagaataaacactg-aattgtcaga-----t-----tattatgggttatac-atatttaggttttcttagatacttctaaactgcTAAATTAATTTGTT--TAGGTAGATAAAATCTT-ATCAGTATTACAGAGTATTAAATCTTAACAAGTGggctttgtgaaaaataacttgtttttactc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112558967 178 + 204313951 gggatttctataaaataaacactg-aatagtcaga-----t-----tattatgggttatac-aatattatgttttcttagatacttctaaactgctAAATTAATTTGTT--TAGGTAGATACAATCTT-ATCAGTCTTACAGAGTATTAAATCTTAACAAGTGggctttgtgaaaaataacttgttcttgatc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45012416 175 + 71252344 GGGATTTCTATAAAATAAACACTG-AATAGTCAGA-----T-----TATTATGGGTTATAC-AA---TATGTTTTCTTAGATACTTCTAAACTGCTAAATTAATTTGTT--TAGGTAGATAGAATCTT-ATCAGTATTATAGAGTATTAAATCTTAACAAGTGggctttgtgaaaaataacttgttcttgctc i saiBol1.JH378106 I 226 C 0 s cebCap1.NW_016107830v1 371496 178 - 1393929 gggatttctataaaataaacactg-aatagtcaga-----t-----tattatgggttatac-aatattatattttcttagatacttctaaactgcTAAATTAATTTGTT--TAGGTAGATAGAATCTT-ATCAGTATTACAGAGTATTAAATCTcaacaagtgggctttgtgaaaaataacttgttcttgctc i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1443943 179 - 15889662 gggatttctataaaataaacactg-aatagtcaga-----t-----tattatgggttatac-aatattatgttttcttagatacttctaaactgcTAAATTAATTTGTT--AAGGTAGATATAATCTTAATCAGTATTACAGAGTATTAAATCTTAACAAGTGggctttgtgaaaaataacttgttcttgctc i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1325708 182 - 29863360 gggatttctctgtagtaagcactg-agcagtcagagtgctC-----TGTTATGGACTGTA--AAACTTTTGTTTGGTTAGGTACATCTAAATTGCTAACTTAATTTGTT--TGGGCAGATATAATCTT-ATCAGTACTGCAAAGTATTAAATCTTAACAAATGGGCTTTGAGAAAACCTACTTGTTCCTGCTT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14334954 180 + 91889043 gagatttctgtagggtgtagagtataacag--aga-----ttgctctattataggttctacaccttttatgttttagtagacttttctaaattgcTAAATTAATTTGCT--TGTGCAGATCTAATC---ATTGATATTACAAAGTATTAAATCTTAA-AAGTGGACCTTGTGAAAAACAACTCCTTCCTGCTC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1263878 186 - 11655695 gaaatttttataggttaaacactg-agttgtggga-----ttgctctattataggttacatgccttttatattttattagagacttctaaattgcTAAATTATTTTTTTGGTAGGTAGATCTAATCTT-GTTAGCGTTATGAAGTATTAAGTCTTAGTAAGCGGGTTTTGTGAAAAACAACTTGTTCTTCTTC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84841687 20 + 108143057 I e proCoq1.NW_012147189v1 609623 21801 - 10520994 I e mm10.chr13 76479646 2004 + 120421639 I a score=2076498.000000 s hg38.chr5_GL383530v1_alt 73895 139 + 101241 AGTTTAATTTCCTCAGTGACAAA-CTGTAGCCCTGTAGATAAGGAAGAAGAAAGAAGGGCAATATATTTGAAGTG----AAGATTTGGATTTGAATTATAGAAGTTTCTTGC-TAATGAACCTGGGAAAACTGCTTTGAAA-----TATA s panTro5.chr5 20307802 139 + 181907262 agtttaatttcctcagtgacaaa-ctgtagccctgtagataaggaagaagaaagaagggcaatatatttgaagtg----aagatttggattTGAATTATAGAAGTTTCTTGC-TAATGAACCTGGGAAAACTGCTTTGAAA-----TATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20320127 139 + 183735486 agtttaatttcctcagtgacaaa-ctgtagccctgtagataaggaagaagaaagaagggcaatatatttgaagtg----aagatttggattTGAATTATAGAAGTTTCTTGC-TAATGAACCTGGGAAAACTGCTTTGAAA-----TATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4806779 139 - 13748885 AGTTTAATTTCCTCAGTGACAAA-CTGTAGCCCTGTAGATAAGGAAGAAGAAAGAAGGGCAATATATTTGAAGTG----AAGATTTGGATTTGAATTATAGAAGTTTCTTGC-TAATGAACCTGGGAAAACTGCTTTGAAA-----TATA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53839359 139 - 163208435 agtttaatttcctcagtgacaaa-ctatagccctgtagataaggaagaagaaagaagggcaatatatttggagtg----aagatttggatttgaattatagaagtttcttgc-taatgaacctgggaaaattgcttcgaaa-----tata i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87862154 139 - 180051392 agtttaatttcctcagtgacaaa-ctgtagccctgtagataaggaagaagaaagaagggcaatatatttgaaatg----aagctttggatttgaattatagaagttccttgc-taatgaacctgggaaaactgctttgaaa-----tata i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87966578 139 - 181584905 agtttaatttcctcagtgacaaa-ctgtagccctgtagataaggaagaagaaagaagggcaatatatttgaaatg----aagctttggatttgaattatagaagttccttgc-taatgaacctgggaaaactgctttgaaa-----tata i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1194052 139 - 8785636 agtttaatttcctcagtgacaaa-ctgtagccctgtagataaggaagaagaaagaagggcaatatatttgaaatg----aagctttggatttgaattatagaagttccttgc-taatgaacctgggaaaactgctttgaaa-----tata i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1657740 139 + 27333823 agtttaatttcctcagtgacaaa-ctgtagccctgtagataaggaagaagaaagaaggacaatatatttgaaatg----aagctttggatttgaattatagaagttccttgc-taatgaacctgggaaaactgctttgaaa-----tata i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1927350 139 - 91010382 agtttaatttcctcagtgacaaa-ctgtaggcctgtagataaggaagaagaaagaagggcaatatatttgaaatg----aagctttggatttgaattatagaagtttcttgc-taatgaacctgggaaaactgctttgaaa-----tata i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2046771 139 + 5179401 agtttaatttcctcagtgacaaa-ctgtagccctctagattaggaagaagaaagaagggcaatatatttgaaatg----aagctttggatttgaattatagaagttccttgc-taatgaacctgggaaaactgctttgaaa-----tata i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7749577 139 - 21726897 agtttaatttcctcagtgacaaa-ctgtagccctgtagagaaggaagaagaaagaagggcaatatatttgaaatg----aagctttggatttgaattatagaagtttcttgc-taatgaacctgggaaaactgctttgaaa-----tata i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112559145 139 + 204313951 agtttaatttcctcagtgatgaa-ctgcagccctgtagataaggaagaagagagaagggcaatatatttgaagtg----aagctttggatttgaattatagaactttcttgc-tgatgaacttgggaaaattgctttgaaa-----tata i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45012591 139 + 71252344 agtttaatttcctcagtgatgaa-ctgcagccctgtagataaggaagaagagagaaggacaatatatttgaagtg----aagctttggatttgaattatagaagtttcttgc-tgatgaacttggtaaaattgctttgaaa-----tata i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 371674 139 - 1393929 agtttaatttcctcagtgatgaa-ctgcagccctatagataaggaagaagagagaagggcaatatatttgaagtg----aagctttggatttgaattatagaagtttcttgc-tgataaacttgggaaaattgctttgaaa-----tata i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1444122 139 - 15889662 agtttaatttcctcagtgatgaa-ctgcagccctgtagataaggaagaagagagaagggcaatgtatttgaagtg----aagctttggatttgaattatagaagtttcttgc-tgatgaacttgggaaaattgctttgaaa-----tata i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84841707 138 + 108143057 AGTTTAATTTCCTCAGTGACAAA-CTGTGGCCTTGTAGGTGA-GGAGTAGGAAGAAAAGCAGAATATTTGAAGTG----AAGCTTTATACTTGAATCACATAGGTTTCTTGC-TAATGACCTAGGGAGAACTGCTTTGAAA-----TACT i micMur3.chr12 I 20 C 0 s proCoq1.NW_012147189v1 631424 138 - 10520994 AGTTTAATTTCCTCGGTGACAAA-CTGTGGCCTTGTAGATAA-GGGGTAGGAAGAAAAGCAGAGTATTTGAAGTC----AAGTTTCATACTTGAATCACATAGGTTTCTTAC-TAATGACCTAGGGAAAACTGCTTTGAAA-----TATG i proCoq1.NW_012147189v1 I 21801 C 0 s otoGar3.GL873536 1325890 144 - 29863360 AGTTTCATTTCCTTAGTGATAAA-CTGTGGCCTTGTGGATAAGGGGGTGGGAAGGAAAGCAGTCTGTCTGAAGTG----CAGCCTTGTATGTGATTCACAAAGGTTGCTCAC-TATTGAACTAGGGAGAACTGCTCTGAAATATATTATA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14335134 126 + 91889043 --------------AGTAGCAAA-CTATAACCCTGTAGATAAGGGGGAAGAAAGAAAAGAAATACATTGGAAATG----AAGCTTTGGATTGGAATTACATAGTTTTATCACGTAGTGAACATGGGGAAACTGTTCTGAAA-----TATA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1264064 123 - 11655695 -----AATTTCATCAATAACAAATCTGTAGCCTTGTAGATAAAGGGG-GGAAGAAAAAACAATATATTTGAACTTTAACAAAGTTTTGATTTGAATCA---------CCTAC-------AATTGGGAAAACTGCTTTGAAA-----TATA i dasNov3.JH570378 C 0 I 609 e mm10.chr13 76479646 2004 + 120421639 I a score=1451646.000000 s hg38.chr5_GL383530v1_alt 74034 98 + 101241 CGATGATCAGATACCCAATTAACTAGAGTACT-AAAAACAAAAGCCAGTAATTAAAACCTTACCATCAACCTGA-GGGTCTTTATTGAAGCTCTTCTGGT s panTro5.chr5 20307941 98 + 181907262 CGATGATCAGATACCCAATTAACTAGAGTACT-AAAAACAAAAGCCAGTAATTAAAAACTTACCATCAACCTGA-GGGTCTTTATTGAAGCTCTTCTGGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20320266 98 + 183735486 CGATGATCAGATACCCAATTAACTAGAGTACT-AAAAACAAAAGCCAGTAATTAAAAACTTACCATCAACCTGA-GGGTCTTTATTGAAGCTCTTCTGGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4806918 98 - 13748885 CGATGATCAGATACCCAATTAAATAGAGTACT-AAAAACAAAAGCCAGTAATCAAAAACTTACCATCAGCCTGA-GGGTCTTTATTGAAGCTCTTCTGGT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53839498 97 - 163208435 cgatgatcagatacccaattaactagagtgct--aaaacaaaagccagtaatcaataacttaccatcaacctga-gggTCTTTATTGAAGCTCTTCTGGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87862293 98 - 180051392 cgatgatcagatacccaattagctagagtgct-aaaaacaaaagctggtaatcaataacttaacatcaatctga-gggTCTTTATTGAAGCTCTTCTGGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87966717 98 - 181584905 cgatgatcagatacccaattagctagagtgct-aaaaacaaaagctggtaatcaataacttaacatcaatctga-gggTCTTTATTGAAGCTCTTCTGGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1194191 98 - 8785636 cgatgatcagatacccaattagctagagtgct-aaaaacaaaagctggtaatcaataacttaacatcaatctga-gggTCTTTATTGAAGCTCTTCTGGT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1657879 98 + 27333823 cgatgatcagatacccaattagctagagtgct-aaacacaaaagccggtaatcaataacttaacatcaatctga-gggTCTTTATTGAAGCTCTTCTGGT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1927489 98 - 91010382 cgacaatcagatacccaattagctagagagct-aaaaacaaaagccgttaatcaataacttaacatcaatctga-gggTCTTTATTGAAGCTCTTCTGGT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2046910 98 + 5179401 cgatgatcagatacccaattagctagagtgct-aaacacaaaagccggtaatcaataacttaacatcaatctga-gggTCTTTATTGAAGCTCTTCTGGT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7749716 98 - 21726897 cgatgatcagatacccaattagctagagtgct-aaaaacaaaagccagtaatcaatagcttgacatcaatctga-gggTCTTTATTGAAGCTCTTCTGGT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112559284 98 + 204313951 cgatgatcagatacccaattagttagagtgct-aaaaacaaaagccactaatcaataatttagcatcaatctga-tggTCTTTATTGAAGCTCTTCTGGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45012730 98 + 71252344 cgatgatcagatacccaattagctagagtgct-aaaaacaaaagccagtaatcaataacttagcatcaatctga-tggTCTTTACTGAAGCTCTTCTGGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 371813 97 - 1393929 tgatgatcagatacccaattagctagagtgct-aaaaacaaaagccagtattcaa-aacttagcatcaatctga-tggTCTTTATTGAAGCTCTTCTGGT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1444261 99 - 15889662 cgatgatcacatacccaattagctagagtgctaaaaaacaaaagccagtaatcaataacttagcatcaatccga-tggTCTTTATTGAAGCTCTTCTAGT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84841845 98 + 108143057 GAATGATCAGATACCCAATTGGCTATAGTGCC-AAAAACAAAAGCCAGCAATCAATCACTTCACATCAATCTGA-GAGTCTTTATTAAAGCTCTTCTGGT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 631562 98 - 10520994 CAATGATTGGATACCCAATAGGCTATAGTGCC-CAAAACAAAAGCCAGTAATCAATCACTTCACATCAATCTGA-GAGTCTTTACTGAAGCTCTTCTGCT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1326034 97 - 29863360 CAATGATTGGATACTCAACTGCCTATAGTGCT-CAAAACAAAAGCCAATAATTAATAACTTAACATCAATCTGA-GAGTCTTTATTAAGGCTCTG-TGGT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14335260 97 + 91889043 CATTGATCAGCTACTCAATTAGCTGTGGTGCC-AAAACCCAAAACCGGTAATCCATAACT--GCATCAATCAGAGGGGTGTTTTGGGAAGTTCCTCTGGT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1264796 91 - 11655695 ccacaGTCAGGTACACAATTAACTAGAGTGCC-AAAAACAAAAGCTAGTAATCAA-----TAGCATTAATAAGA--GTTCCTTCTTGAA-CTCTTCTGGT i dasNov3.JH570378 I 609 C 0 e mm10.chr13 76479646 2004 + 120421639 I a score=2552321.000000 s hg38.chr5_GL383530v1_alt 74132 182 + 101241 TTAATACTCTTAA-TTTTTTT--AAAAAAATCAATCTGTTGAATGTATTAAAAAGCTGGCTTAATAAAACC-TGAAGATAGCTTAAGAATAATGAGAAACTCGGGCTTATTTTGAAAAGTGACCATT-AAAACTAAAAT-CTTCCTTAT--AGGTGATTCTATTCAATGATT-CAGTCCACTGATGTTTAG s panTro5.chr5 20308039 182 + 181907262 TTAATACTCTTAA-TTTTTTT--AAAAAAATCAATCTGTTGAATGTGTTAAAAAGCTGGCTTAATAAAACC-TGAAGATAGCTTAAGAATAATGAGAAACTCGGGCTTATTTTGAAAAGTGACCATT-AAAACTAAAAT-CTTCCTTAT--AGGTGATTCTATTCAATGATT-CAGTCTACTGATGTTTAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20320364 182 + 183735486 TTAATACTCTTAA-TTTTTTT--AAAAAAATCAATCTGTTGAATGTGTTAAAAAGCTGGCTTAATAAAACC-TGAAGATAGCTTAAGAATAATGAGAAACTCGGGCTTATTTTGAAAAGTGACCATT-AAAACTAAAAT-CTTCCTTAT--AGGTGATTCTATTCAATGATT-CAGTCTACTGATGTTTAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4807016 184 - 13748885 TTAATACTCTTAA-TTTTTTT--AAAAAAATCAATCCGTTGAATGTATTAAAAAGCTGGCTTAATAAAACC-TGAAGATAGCTTAAGAATAATGAGAAACTTGGGCTTATTTTGAAAAGTGACCATTAAAAACTAGAAT-CTTCCTTAT--AGGTGATTCTATTCAATGATTCCAGTCCACTGATGTTTAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53839595 183 - 163208435 TTAATACTCTTAATTTTTTTT--AAAAAAATCAATCCATTGAATGTATTAAAAAGCTGGCTTAATAAAACC-TGAAGATAGCTTAAGAATAATGAGAAACTTGGGCTTATTTTGAAAAGTGACCATT-AAAATTAGAAT-CTTCCTTAT--AGGTGATTCTATTCAATGATT-CAGTCCACTGATGTTTAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87862391 183 - 180051392 TTAATACTCTTAA-TTTTTTTA-AAAAAAATCAATCAATTGAATGTATTAGACAGCTGGCTTAATAAAATC-TGAAGATAGCTTAAGAATAATGAGAAACTTGGGCTTATTTTGAAAAGTGACCATT-AAAACTAGAGG-CTTCCTTAT--CGGTGATTCTATTCAGTGATT-CAGTCCACTGATGTTTAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87966815 183 - 181584905 TTAATACTCTTAA-TTTTTTTT-AAAAAAATCAATCCATTGAATGTATTAAACAGCTGGCTTAATCAAATC-TGAAGATAGCTTAAGAATAATGAGAAACTTGGGCTTATTTTGAAAAGTGACCATT-AAAACTAGAGT-CTTCCTTAT--CGGTGATTCTATTCAGTGATT-CAGTCCACTGATGTTTAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1194289 183 - 8785636 TTAATACTCTTAA-TTTTTTTT-AAAAAAATCAATCCATTGAATGTATTAAACAGCTGGCTTAATCAAATC-TGAAGATAGCTTAAGAATAATGAGAAACTTGGGCTTATTTTGAAAAGTGACCATT-AAAACTAGAGT-CTTCCTTAT--CGGTGATTCTATTCAGTGATT-CAGTCCACTGATGTTTAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1657977 181 + 27333823 TTAATACTCTTAA-TTTTTT---AAAAAAATCAATCAATTGAATGTATTAAACAGCTGGCTTAATCAAATC-TGAAGATAGCTTAAGAATAATGAGAAACTTGGGCTTATTTTGAAAAGTGACCATT-AAAACTAGAGT-CTTCCTTAT--CGGCGATTCTATTCAGTGATT-CAGTCCACTGATATTTAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1927587 182 - 91010382 TTAATACTCTTAA-TTTTTTT--AAAAAAATCAATCCATTGAATGTATTAAACAGCTGGCTTAATAAAATC-TGAAGATAGCTTAAGAATAATGAGAAACTTGGGCTTATTTTGAAAAGTGACCATT-AAAACTAGAGT-CTTCCTTAT--TGGTGATTCTATTCAGTGATT-CAGTCCACTGACGTTTGG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2047008 181 + 5179401 TTAATACTCTTAA-TTTTTTT---AAAAAATCAATCCATTGAATGTATTAAACAGCTGGCTTAATCAAATC-TGAAGATAGCTTAAGAATAATGAGAAACTTGGGCTTATTTTGAAAAGTGACCATT-AAAACTAGAGT-CTTCCTTAT--CGGCGATTCTATTCAGTGATT-CAGTCCACTGATATTTAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7749814 184 - 21726897 TTAATACTCTTAA-TTTTTTTTAAAAAAAATCAATCCTTTGAATGTATTAAACAGCTGGCTTAATAAAATC-TGAAGATAGCCTAAGAGTAATGAGAAACTTGGGCTTATTTTGAAAAGTGACCATT-AAAACTAGAGT-CTTCCTTAT--CGGTGATTCTATTCAGTGATT-CAGTCCACTGATGTTTAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112559382 180 + 204313951 TTAATACTCTTAA-TTTTT----TAAAAAATCAATCCTTTGAATGTATTAAAAACCAGGCTTAATAAAACC-TGAAGATAGCTTAAGAATAATGAGAAACTGGGACTAATTTTGAAAAGTGACCATT-AAAACTAGAGT-CTTCCTTAT--TGGTGATTCCATTCAATGATT-CAGTCCACCAATGTTTAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45012828 151 + 71252344 TTAATACTCTTA----------------------------------ATTGAAAAGCTGGCTTAATAAAACC-TGAAGATAGCTTAAGAATAATGAGAAACTGGGACTTATTTTGAAAAGGGACCATT-AAAACTAGAGT-TTTCCTTAT--TGGTGATTCCATTCAATGATT-CAGTCCACCGATGTTTAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 371910 180 - 1393929 TTAATACTCTTAA-TTTTT----TAAAAAATCAATCCATTGAATGTATTTAAAAGCTGGCTTAATAAAACC-TGAAGATAGCTTAAGAATAATGAGAAACTGGGACTTATTTTGAAAAGTGACCATT-AAAACTAGAGT-CTTCCTTAT--TGGTGATTCCATTCAATGATT-CAGTCCACCGATGTTTAG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1444360 179 - 15889662 TTAATACTCTTAA--TTAA----AAAAAAATCAATCTGTTGAATGTATTAAAAAGCTGGCTTAATAAAACC-TGAAGATAGCTTAAGAATAATGAGAAACTGGGACTTATTTTGAAAAGTAACCATT-AAAACTAGAGA-CTTCCTTAT--TGGTGATTCCATTCAATGATT-CAGTCCACCGATGTTTAG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84841943 181 + 108143057 TTAATAATCTTAA-TTTAAA---AGAAATTCCAACCCATCGAAGGGATAAAAAAGCAGGCTTAATAAAACC-TGAAGATAGCTTTAGAATAATAAGGACCTTGAGCTTATTTTGAAAAGTGATCATT-AAAATGAGAAT-CCTCCTCAT--TGGTGATTCCATTCAGTGATT-CAATCCAGAGATGTTGAG i micMur3.chr12 C 0 I 55 s proCoq1.NW_012147189v1 631660 182 - 10520994 TTAATAATCTTAA-TTTAAAG--AAAAAAATCAACCCATTGAATGGATTAAAAAGCAGGCTTAATAAAACC-CGAAGATAGCTTGACAATAATAAGGGCCTTGAGCTTATTTTTAAAAGTGACCATT-CAAACTAGAAT-CCTCCTCAC--TGGTGATTCCATTCAGTGATT-CAGTCCAGTGATGTTGAG i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1326131 176 - 29863360 TTAATAATCTTAC-TTTTTT---AAAA----CAACCCATTGAATGGATTAAAAAGTAGACTTAATTAAACCTTGAAGATAGGTTATGAATGATGGGAGCTTTGGGCTTGTTTTGAAAAGTGACCATT-AAAACT-GAGT-CTTCCTCAT--TGGTGATTCCATTCAGTGA-C-CAACCCCATGATCATTAG i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76481650 169 + 120421639 TTGATAGTCTTTT-TTTTTTT--AAAT-------CCCACTGAATGTACTGAAAAACAACCTTATTAAAACA-TGAATA-AGCTGGGAAAAAGTTTTA---TTTAGTTTACTTTAAAAAGTGACTGTT-AGGACAAGTATAATTCTTTATCATGGTAATTCCA-----TGACT-CAGCCCAGTGGCATTCAC i mm10.chr13 I 2004 C 0 s canFam3.chr3 14335357 166 + 91889043 TTGATACTCTAAG-GTTTTT---AAAAAAG---------TGAATTGAATAAAAAGAAAACTTAATAAAA-C-TGAGCATAATTTGAGAATAATGGGGGTCTTGGGCTGTTTTTAAAAAGTTCCCACT-CAAACTAGGAT-CTTCCTCAT--TGGTGGTACTATCCAATGATG-CATTCCAGGGATG----- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1264887 176 - 11655695 TTGATATTATTAA-TTT------TAAAAGGTCA-CCAGTTGAATGGAATAAAAAGCAAGCCTAATAAAGT--TGAGGATAGTCAAGGAATGACAGGGGCCTTGGGCTGTTTTGGAAAAGTGACCATT-AAAGCTAGAAT-CTTCCTTAT--CCATGATTCCAGTCAGCCATC-CATTCCACTGATATTTAG i dasNov3.JH570378 C 0 C 0 a score=446909.000000 s hg38.chr5_GL383530v1_alt 74314 31 + 101241 AATGGA-TTCCATCAGCTGGTAAAAGGCACTC s panTro5.chr5 20308221 31 + 181907262 AATGGA-TTCCATCAGCTGGTAAAAGGCACTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20320546 31 + 183735486 AATGGA-TTCCATCAGCTGGTAAAAGGCACTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4807200 31 - 13748885 AATGGA-TTCCATCAGCTGGTAAAAGGCACTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53839778 31 - 163208435 AATAGA-TTCCATCAGCTGGTAAAAGGCACTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87862574 31 - 180051392 AATAGA-TTCAATCAGCTGGTAAAAGGCACTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87966998 31 - 181584905 AATAGA-TTCAATCAGCTGGTAAAAGGCACTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1194472 31 - 8785636 AATAGA-TTCAATCAGCTGGTAAAAGGCACTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1658158 31 + 27333823 AATAGA-TTCAATCAGCTGGTAAAAGGCACTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1927769 31 - 91010382 AATAGA-TTCAATCAGCTGGTAAAAGGCACTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2047189 31 + 5179401 AATAGA-TTCAATCAGCTGGTAAAAGGCACTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7749998 31 - 21726897 AATAGA-TTCAATCAGCTGGTAAAAGGCACTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112559562 31 + 204313951 AATGGA-TTCAGTCAGCTGGTAAAAGGCACTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45012979 31 + 71252344 AATGGA-TTCAGTCAGCTGGTAAAAGGCACTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 372090 31 - 1393929 AATGGA-TTCAATCAGCTGGTAAAAGGCACTC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1444539 31 - 15889662 AATGGA-TTCAGTCAGCTGGTAAAAGGCACTC i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 631842 30 - 10520994 -ATGGA-TTCAGTCAGCTTGCAAGAGGCTCTC i proCoq1.NW_012147189v1 C 0 I 23 s otoGar3.GL873536 1326307 30 - 29863360 -ATGGA-TTGAGTCAACTGGTAAGAGGCTCTG i otoGar3.GL873536 C 0 I 2 s mm10.chr13 76481819 31 + 120421639 AGTAGA-CTCAGTAAGCAAGTATGAAGTTTTT i mm10.chr13 C 0 C 0 s canFam3.chr3 14335523 31 + 91889043 AATGAA-TTTAGTCAGCTGATAATTGACTCTC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1265063 32 - 11655695 AATGAAGTTCAGTCAGCTGGTAATAAGTTTTT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84842124 55 + 108143057 I a score=272103.000000 s hg38.chr5_GL383530v1_alt 74345 25 + 101241 CTTCAGGATGGACACTCT-CCCCCTG s panTro5.chr5 20308252 25 + 181907262 CTTCAGGATGGACACTCT-CCCCCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20320577 25 + 183735486 CTTCAGGATGGACACTCT-CCCCCTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4807231 25 - 13748885 CTTCAGGATGCACACTCT-CCCCCTG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53839809 25 - 163208435 CTTCAGGATGAACACTTT-CCCCCTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87862605 25 - 180051392 CATCGGGATGGACACTTT-CCCCCTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87967029 25 - 181584905 CATCGGGATGGACACTTT-CCCCCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1194503 25 - 8785636 CATCGGGATGGACACTTT-CCCCCTG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1658189 26 + 27333823 CATCGGGATGGACACTTTCCCCCCTG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1927800 25 - 91010382 CTTCGGGATGGACACTTC-CCCCCTG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2047220 25 + 5179401 CATCGGGATGGACACTTT-CCCCCTG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7750029 25 - 21726897 CTTTGGGATGGACACTTT-CCCCCTG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112559593 25 + 204313951 CTTTGGGATGGACACTTT-CCCCCTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45013010 24 + 71252344 CTTT-GGATGGACACTTT-CCCCCTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 372121 25 - 1393929 CTTTGGGATGGACACTTT-CCCCCTG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1444570 25 - 15889662 CTTTGGGATGGACACTTT-CCCCCTG i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1326339 24 - 29863360 TTCCTGGCTGAGCACTTT-CCACCC- i otoGar3.GL873536 I 2 C 0 s mm10.chr13 76481850 24 + 120421639 CCCATGGTTGGATACTTT-CCACTC- i mm10.chr13 C 0 C 0 s canFam3.chr3 14335554 21 + 91889043 ---CTGGCTGCATACTTC-CACCCT- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1265095 25 - 11655695 CTTCTGACTGGGTACTTT-CCACCTC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84842124 55 + 108143057 I e proCoq1.NW_012147189v1 631872 23 - 10520994 I a score=548851.000000 s hg38.chr5_GL383530v1_alt 74370 45 + 101241 CAGCTATCCACAGC-CCTCATGCCAACC-AAACTGCTCCT---GTTAAGG s panTro5.chr5 20308277 45 + 181907262 CAGCTATCCACAGC-CCTCATGCCAACC-AAACTGCTCCT---GTTAAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20320602 45 + 183735486 CAGCTATCCACAGC-CCTCATGCCAACC-AAACTGCTCCT---GTTAAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4807256 45 - 13748885 CAGCTATCCACAGC-CATCATGCCAACC-AAACTGCTCCT---GTTAAGG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53839834 45 - 163208435 CAGCTATCCACAGC-CCTCATGCCAACC-AAACTGCTCCT---GTTAAGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87862630 45 - 180051392 CAGCTATCCTCAGC-CCTCATGCCAATC-AGACTGCTCCT---TTTAAGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87967054 45 - 181584905 CAGCTATCCTCAGC-CCTCATGCCAATC-AGACTGCTCCT---TTTAAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1194528 45 - 8785636 CAGCTATCCTCAGC-CCTCATGCCAATC-AGACTGCTCCT---TTTAAGG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1658215 45 + 27333823 CAGCTATCCTCAGC-CCTCATGCCAATC-AGACTGCTCCT---TTTAAGG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1927825 45 - 91010382 CAGCTATCCTCAGC-CCTCATGCCAACC-AAACTGCTCCT---TTTAAGG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2047245 45 + 5179401 CAGCTATCCTCAGC-CCTCATGCCAATC-AGACTGCTCCT---TTTAAGG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7750054 45 - 21726897 CAGCTATCCTCAGC-CCTCATGCCAACC-AAACTGCTCCT---TTTAAGG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112559618 45 + 204313951 CAGCTATCCACAGC-CCTCATGCCGACC-AAACTGCTCCT---TTTAAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45013034 45 + 71252344 CAGCTATCCATAGC-CCTCATGTCAACC-AAACTGCTCCT---TTTAAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 372146 45 - 1393929 TAGCTATCCACAGC-CCTCATGCCAACC-AAACTGCTCCT---TTTAAGG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1444595 45 - 15889662 CAGCTATCCACAGC-CCTCATGCCAACC-AAACTGCTCCT---TTTAAGG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84842179 49 + 108143057 CAGCTATCCACAGC-CCTCACACCTGCTGTAACTGCTCCTCATTCTAAAA i micMur3.chr12 I 55 C 0 s proCoq1.NW_012147189v1 631895 47 - 10520994 CAGCTATCCACGGC-CTTCACACCCGC--CAGCTGCTCCTCATTCTGAAA i proCoq1.NW_012147189v1 I 23 C 0 s otoGar3.GL873536 1326363 38 - 29863360 CAGCTATCCACAGC-CCCTGCACCTGCC-AAATTGCTCCT---------- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76481874 46 + 120421639 CAGCTTTCTGCAGCAATTTCCACCTGCC-AAGTTCTTTAT---TCTGAAA i mm10.chr13 C 0 C 0 s canFam3.chr3 14335575 27 + 91889043 -AGGTCTCCATAGC-CCTTTT--TGTTC-AAG------------------ i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1265120 47 - 11655695 CAGTTCTCCACAAT-CTTC-TATTTGCT-ATTGTCCTCCTTATTCTAAGG i dasNov3.JH570378 C 0 C 0 a score=1458700.000000 s hg38.chr5_GL383530v1_alt 74415 115 + 101241 CCCAGTGCTAA--CACTGACCCTCAC-TGTTCATACTCAGGCTGTTAGTTGCT-AGTCTGCATA---TACTTATAGGATTTCTTCGTACTGTTAtggattatatcgactc-tttctcctctct s panTro5.chr5 20308322 115 + 181907262 CCCAGTGCTAA--CACTGACCCTCAC-TGTTTATACTCAGGCTGTTAGTTGCT-AGTCTGCATA---TACTTATAGGATTTCTTCGTACTGTTAtggattatatcgactc-tttctcctctct i panTro5.chr5 C 0 C 0 s panPan2.chr5 20320647 115 + 183735486 CCCAGTGCTAA--CACTGACCCTCAC-TGTTTATACTCAGGCTGTTAGTTGCT-AGTCTGCATA---TACTTATAGGATTTCTTCGTACTGTTAtggattatattgactc-tttctcctctct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4807301 115 - 13748885 CCCAGTGCAAA--CACTGACCCTCAC-TGTTTATACTCAGGCTGTTAGTTGCT-AGTCTGCATA---TACTTATAGGATTTCTTCGTACTGTTATGGACTATATCGACTC-TTTCTCctctct i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53839879 115 - 163208435 CCCAGTGCAAA--CACTGACCCTCAC-TGCTTATACTCAGGCTGTTAGTTGCT-AGTCTGCATA---TACTTGCAGGATTTCTTCGTACTCTTACGGATTATATCGACTC-TTTCgcctctct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87862675 115 - 180051392 CCCAGTCCTAA--CGCTGACCCTCAC-TGTTTACACTCAGGCTGTTAGTTGCT-AGTCTGCGTA---TGCTTACAGGATTTCTTCATACTCTTATGGATCATATCTACTC-TTTCTCCTCTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87967099 115 - 181584905 CCCAGTCCTAA--CGCTGACCCTCAC-TGTTTACACTCAGGCTGTTAGTTGCT-AGTCTGCGTA---TGCTTACAGGATTTCTTCATACTCTTATGGATCATATCTACTC-TTTCTCCTCTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1194573 115 - 8785636 CCCAGTCCTAA--CGCTGACCCTCAC-TGTTTACACTCAGGCTGTTAGTTGCT-AGTCTGCGTA---TGCTTACAGGATTTCTTCATACTCTTATGGATCATATCTACTC-TTTCTCCTCTCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1658260 115 + 27333823 CCCAGTCCTAA--CGCTGACCCTCAC-TGTTTACACTCAGGCTGTTAGTTGCT-AGTCTGTGTA---TGCTTACAGGATTTCTTCATACTCTTATGGATCATATTTACTC-TTTCTCCTCTCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1927870 115 - 91010382 CCCAGTGCAAA--CACTGACCCTCAC-TGTTTATACTCAGGCTGTTAGTTGCT-AGTCTGCGTA---TACTTACAGGATTTCTTCATACTCTTATGGATCATATCTACTC-TTTCTCCTCTCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2047290 115 + 5179401 CCCAGTGCAGA--CACTGACCCTCAC-TGTTTATACTCAGGCTGTTAGTTGCT-AGTCTGCGTA---TACTTACAGGATTTCTTCATACTCTTATGGATCATATCTACTC-TTTCTCCTCTCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7750099 115 - 21726897 CCCCGTGCAAA--TACTGACCCTCAG-TGTTTATACTTAGGCTGTTAGTTGCT-AGTCTGCATG---TACTTACAGGATTTCTTCATGCTCTTATGGATTATATCCACTC-TTTCTCCTCTCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112559663 116 + 204313951 CCCAGTGCAAA--CATTGGCCCTCAC-TGTTTATACTCAGGCTGTTAGTTGCTAAGTCTGTGTG---TACTTACAGGATTTCTTCATACTATTATGGATTATATCTACTC-TTTTTCCTCTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45013079 116 + 71252344 CCCAGTGCAAA--CAGTGGCCCTCAC-TGTTTATACTCAGGCTGTTAGTTGCTAAGTCTGCGTA---TGCTTACAGGATTTCTTCATACTATTATGGATTATATCTACTC-TTTTTCCTCGCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 372191 114 - 1393929 CCCAGTGCAAA--CACTGGCCCTCAC-TGTTTATACTCAGGCTGTTAGTTGCTAAGTCTGCATA---TACTTACAGGATTTCTTCATACTATTATGGATTATATCTACTC-TTTTTCCT--CT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1444640 116 - 15889662 CCCAGTGCAAA--CACTGGCCCTCAC-TGTTTATACTCAGGCTGTTAGTTGCTAAGTCTGCATG---TACTTACAGGATTTCTTCAtactattatggattatatctactc-tttttcctctgt i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84842228 116 + 108143057 CCCAGTGCAGA--CGCTGCCCCTCAC-TGCTCATACTCAGGCTGTCAGTTGCTAAGTCTTCATA---TTCTTATAGAATTTCCTCATACTGTTATGGGGTATATCTGTTC-TTTCTCCTCTCT i micMur3.chr12 C 0 I 12 s proCoq1.NW_012147189v1 631942 112 - 10520994 CCCAGTGCAAA--CGCTGCCCCTCAC-TGTTCATACTCAGGCTGTTAGTTGCTAAGTCTTCATA---TTCTTATAGAATTTCctcgtactgttatggggtgtatctgtcc-tttctcct---- i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1326401 98 - 29863360 -------CAAA--CACTGATCCTCACTTACTCACAGTCAGGCTGTTAGTTGCTAATTTTATGTACACTTTGTATAGAAGTTCTTCACACTGTTCTGGGTCTCCCCTG---------------- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76481920 100 + 120421639 CTCCATGCAAA-GTACCTGCTCTTAA-TATTCAT-CCCAGAATATCA--------------------CCCTTATACAATCCCCTCATATCATTCTTATCTATATCGGTTTGTTTCTTCTTTCT i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1265167 107 - 11655695 TCCAACACAAATATACCTATCATCAC-TGTTCATACTCCAGCTATTATTTGATAACTCAGTGTA---GTCTTATAGGATTTGTTCATACTTTTATGGAT--TATCTGCTT-TCT--------- i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14335602 0 + 91889043 C a score=184581.000000 s hg38.chr5_GL383530v1_alt 74530 15 + 101241 ctctttact-cccatg s panTro5.chr5 20308437 15 + 181907262 ctctttact-cccatg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20320762 15 + 183735486 ctctttact-cccatg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4807416 15 - 13748885 ctctttact-cccatg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53839994 15 - 163208435 ctctttact-cccatg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87862790 15 - 180051392 CTCTTTATT-CCCAtg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87967214 15 - 181584905 CTCTTTATT-CCCAtg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1194688 15 - 8785636 CTCTTTATT-CCCAtg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1658375 15 + 27333823 CTCTTTATT-CCCAtg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1927985 15 - 91010382 CTCTTTATT-CCCAtg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2047405 15 + 5179401 CTCTTTATT-CCCAtg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7750214 15 - 21726897 CTCTTTATT-CCCAtg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112559779 15 + 204313951 CTCTTTACT-CCCATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45013195 15 + 71252344 CTCTTTACT-CCCATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 372305 15 - 1393929 CTCTTTACT-CCCAtg i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1444756 15 - 15889662 ctctttact-cccatg i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 632054 16 - 10520994 ctcgtcactgcccatg i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1326499 13 - 29863360 ---CTCACTACCCATG i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76482020 16 + 120421639 TTCTTCACTGTCCATG i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1265274 14 - 11655695 CTAGTTATTACCTA-- i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14335602 0 + 91889043 C e micMur3.chr12 84842344 12 + 108143057 I a score=2257823.000000 s hg38.chr5_GL383530v1_alt 74545 164 + 101241 tggactcctggaagactgaaccatgacatattcattattgtattcccagcTGACAGTACTGTGCTTAGGag-cctagtggt-taag-atattgg-cttcaagcagatctgtattt------------aacctcatttctgccactttccagc--tttgtgtattctt--ga-ggaaattgttc-ca- s panTro5.chr5 20308452 164 + 181907262 tggactcctggaagactgaaccatgccatattcattattgtattcccagcTGACAGTACTGTGCTTAGGag-cctagtggt-taag-atattgg-cttcaagcagatctgtattt------------aacctcatttctgccactttccagc--tttgtgtattctt--ga-ggaaattgttc-ca- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20320777 164 + 183735486 tggactcctggaagactgaaccatgccatattcattattgtattcccagcTGACAGTACTGTGCTTAGGag-cctagtggt-taag-atattgg-cttcaagcagatctgtattt------------aacctcatttctgccactttccagc--tttgtgtattctt--ga-ggaaattgttc-ca- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4807431 165 - 13748885 tggactcctggaagactgaaccatgacatattcattattgtatttccagcTGACAGTACTGTGCTTAGGAg-cctagtggt-taag-atattgg-cttcaagcagatctgtattt-----------aaacctcatttctgccactttccagc--tttgtgtattctt--ga-ggaaattgttc-ca- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53840009 164 - 163208435 tggactcctggaagaccgaaccatgacatattcattattgtattcccagcTGACAGCACTGTGCTTAGGAG-CCTAATGGT-TAAG-ATAttgg-cttcaagcagatctgtattt------------aacctcatttctgccactttccagc--tttgtgtattctt--ga-ggaaattgttc-ca- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87862805 164 - 180051392 tggactcctggaagactgaaccatgacttattcattattgtattcccagctgacagcactgtgcttagGag-cctagtggt-taag-atattag-cttcaagcagatctgtattt------------aacctcatgtctgccactttccagc--ttcatgtattctt--ga-ggaagttgttc-ca- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87967229 164 - 181584905 tggactcctggaagactgaaccatgacttattcattattgtattcccagcTGACAGCACTGTGCTTAGGag-cctagtggt-taag-atattag-cttcaagcagatctgtattt------------aacctcatgtctgccactttccagc--ttcatgtattctt--ga-ggaagttgttc-ca- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1194703 164 - 8785636 tggactcctggaagactgaaccatgacttattcattattgtattcccagctgacagcactgtgcttagGag-cctagtggt-taag-atattag-cttcaagcagatctgtattt------------aacctcatgtctgccactttccagc--ttcatgtattctt--ga-ggaagttgttc-ca- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1658390 164 + 27333823 tggactcctggaagactgaaccatgacttattcattattgtattcccagctgacagcactgtgcttagGag-cctagtggt-taag-atactag-cttcaagcagatctgtattt------------aacctcatgtctgccactttccagc--ttcatgtattctt--ga-ggaagttgttc-ca- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1928000 165 - 91010382 tggactcctggaaggctgaaccatgacttatttattattgtattcccagcTGACAGCACTGTGCTTAGGAGCCCtagtggt-taag-atattag-cttcaagcagatctgtattt------------aacctcatgtctgccactttccagc--ttcatgtattctt--ga-ggaagttgttc-ca- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2047420 164 + 5179401 gggactcctggaagactgaaccatgacttattcattattgtattcccagctgacagcactgtgcttagGag-cctagtggt-taag-atattaa-cttcaagcagatctgtattt------------aacctcatgtctgccactttccagc--ttcatgtattctt--ga-ggaagttgttc-ca- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7750229 164 - 21726897 tggactcctggaagactgaaccatgacttattcgttattgtattcccagcTGACAGCGCTGTGCTTAGGag-tctagtggt-taag-atattag-cttcaaacagatctgcattt------------aacctcatgtctgccactttccagc--ttcatgtattctt--ga-gcaagttgttc-ca- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112559794 166 + 204313951 TGGACTCCTGGAAGACTGAACCATGACTTACCCATTATTGTATTCCCATATGATAGCACTGTGCTTAGGAG-CCTagtggt-taagcatatgag-cttcaggcagatctgtattt------------aacctcattcctgccactttccagc--tttgtgtattctt--gg-ggaaattgttcaca- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45013210 166 + 71252344 TAGATTCCTGGAAGACTGAACCATGACTTACCCATTATTGTATTTCCAGCGGATAGTGCTGTGCTTAGGAG-CCTAATGGT-Taagcatatggg-cttcaggcagatctgtattt------------aacctcatttctgccactttccagc--tttgtgtattctt--gg-ggaaattattcgca- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 372320 166 - 1393929 tggactcctggaagactgaaccatgacttacccattattttattcccagctgatagcacTGTGCTTAGGag-cctagtggt-taagcatatggg-cttcaggcagatctgtattt------------aacctcatttctgccactttccagc--tttgtgtattctt--gg-ggaaattgttcaca- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1444771 166 - 15889662 tggactcctggaagactgaaccatgacttacccattattgtattcccagctgatagcacTGTGCTTAAGag-cctagtggt-taagcatatagg-cttcaggcagatctgtattt------------aacctcatttctgccactttccagc--tttgtgtattctt--gg-ggaaattgttcaca- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84842356 168 + 108143057 TGGACTCCTTGAAGACCAAACCGTGACTTCCTCATTATTCTATTCCCAGCCGGCAGCACTGTGCTTAGGAG-CCTCCTGgtggaaggatgtggg-cttccgacagatctgtgtcc-----------aaacctcatttccgccattttccagc--cccgtgtgttctt--gg-ggaaattattcaat- i micMur3.chr12 I 12 C 0 s proCoq1.NW_012147189v1 632070 178 - 10520994 tggactccttgaagaccaaaccgcgacttactcattattctattcctagctggtagcacTGTGCTCAGAag-cctgctggt-gaaggatgtggg-cttcagacagatctgtgttcaaacctcatttaaacctcatttctgccactttccagc--cctgtgtattctt--gg-ggaaattgtttaat- i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1326512 156 - 29863360 TGGGCTCCTTGAG-----------GACTTGTTGACTGTTACATTCCCAGctggcag-actgtgcttaggag-cctagaggt-taaggatgtggg-cttctggcagatcagtgttc-----------agacctcatttctgccactttccagc--tctgtgtattctt--ggtggaaattgttcaac- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76482036 158 + 120421639 TGGTATTCCTGCAGGCTGAA-CACAACATATTCACCCTTGCATTCTCATATGGTGGCACTATGCTTAAGAG-ACT-GTGTT-AAAG-ATg-------tcgggcagatctagttaa------------aattttatttcttcaac-tcccagc--tgtgtgtgttttttggg-gaaaattgctaaag- i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1265288 168 - 11655695 AATGCTTTCTGAAGACTGAGCCACACCTTGTTCATTATTGTGTCCCTAGCTTGTAAGA--ATGCTTAGAag-cctactggc-taatgatatgggttttcagacagatctgtattc-----------aaatctaagttctgccactttctgtctgtctgtgcattctt--ga-agaaattgctt-aaa i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14335602 0 + 91889043 C a score=1937913.000000 s hg38.chr5_GL383530v1_alt 74709 123 + 101241 atacataggcctcagtttccttttctgtaaattgggaccacctaccttaaaggatc------------atta-ggagaggattaattttaatatctgcatgcttagtatagtataaacagtgaaatgatagctgc-t s panTro5.chr5 20308616 123 + 181907262 atacataggcctcagtttccttttctgtaaattgggaccaccaaccttaaaggatc------------atta-ggagaggattaattttaatatctgcatgcttagtatagtataaacagtgaaatgatagctgc-t i panTro5.chr5 C 0 C 0 s panPan2.chr5 20320941 123 + 183735486 atacataggcctcagtttccttttctgtaaattgggaccaccaaccttaaaggatc------------atta-ggagaggattaattttaatatctgcatgcttagtatagtataaacagtgaaatgatagctgc-t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4807596 123 - 13748885 atacataggcctcagtttccttttctgtaaattgggaccacctaccttaaaggatc------------atta-ggagaggattaatttcaatatctgcatgcttagtatagtataaacagtgaaatgatagctgc-t i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53840173 123 - 163208435 atacataggcctcagtttccttttctgtaaattgggaccacctaccttaaaggatc------------atta-ggagaggattaattttaatatctgcatgcttagtatagtataaacagtgaaatgatagctgc-t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87862969 124 - 180051392 ataggcaggcctcagttaccttttctgtaaattgggaccacctaccttaaaggatc------------attt-ggagaagattaattttaatatctgcatgcttagtatagtATAAACAGTGAAATGATAGCTGCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87967393 124 - 181584905 ataggcaggcctcagtttccttttctgtaaattgggaccacctaccttaaaggatc------------attt-ggagaagattaattttaatatctgcatgcttagtatagtATAAACAGTGAAATGATAGCTGCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1194867 124 - 8785636 ataggcaggcctcagtttccttttctgtaaattgggaccacctaccttaaaggatc------------attt-ggagaagattaattttaatatctgcatgcttagtatagtATAAACAGTGAAATGATAGCTGCTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1658554 124 + 27333823 ataggtaggcctcagtttccttttctgtaaattgggaccacctaccttaaaggatc------------attt-ggagaggattaattttaatatctgcatgcttagtatagtATAAACAGTGAAATGATAGCTGCTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1928165 124 - 91010382 ataggtaggcctcagtttccttttctgtaaattgggaccacctaccttaaaggatc------------attt-ggagaggattaattttaatatctgcatgcttagtatagtATAAACAGTGAAATGATAGCTGCTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2047584 124 + 5179401 ataggtaggcctcagtttccttttctgtaaattggggccacctaccttaaaggatc------------attt-ggagaggataaattttaatatctgcatgcttagtatagtATAAACAGTGAAATGATAGCTGCTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7750393 124 - 21726897 atatgtaggcctcagtttccttttctgtaaattgggaccacctaccttaaaggatc------------attt-ggagaggattaattttaatatctgcatgcttagtatagtATAAACAGTGAAATGATAGCTGCTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112559960 123 + 204313951 atacctaggcctcagtttccttttctgtaaattgggaccacctatcttaaaagatc------------attt-gaagaggattaattttaatatctgcatgcttagtatggtataaacagtgaaatgatagctgc-t i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45013376 123 + 71252344 atacttaggcctcagtttccttttctgtaaattgggaccacctatcttaaaagatc------------attt-gaagaggattaattttaatatctacatgcttagtatggtataaacagtaaaatgatagctgc-t i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 372486 123 - 1393929 atacctaggcctcagtttccttttctgtaaattgggaccacctatcttaaaagatg------------attt-gaagaggattaattttaatatctgcatgcttagtatggtataaacagtgaaacgatagctgc-t i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1444937 123 - 15889662 atacctaggcctcagtttccttttctgtaaattgggaccacctatcttaaaagatc------------attt-gaagaggattaattttaatatctgcatgcttagtatggtataaacagtgaaatgatagctgc-t i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84842524 122 + 108143057 atgcctaggccttaatttccttttatgtaaattgtgcctgcctaccttaaaggatt------------gttt-ggggaAGATTTATTTTAATATTTGTGTGCTTGGCATAGTATAGACAGTG-AATGATAGCTGC-T i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 632248 123 - 10520994 ataactaggcctcaatttccttttctgtaaattgtggctatctaccttaaaggatt------------gttt-ggggaagattaattttaatattcatatgcttggcatagtatagacagtgaaatgatagctgc-t i proCoq1.NW_012147189v1 C 0 I 133 s otoGar3.GL873536 1326668 123 - 29863360 gtacctaggcctcaattt-ttttcctctaaattgtggctatttaccttaaaggatt------------gtttgggggaagattaactttagtatttgtCTGTTTATCATAGTATAAACAGTGAAATGATATCTGC-T i otoGar3.GL873536 C 0 I 3 s mm10.chr13 76482194 135 + 120421639 atattcagggcttggtttccttttctgtaaaTACAAAATATAGATTTTAAAGAATTGTTTGGACAAAAATTT-GGATAAGATTAACTTTAATTTCTCTATTCTTGTCTCAGTATAAATAATGAAATGCCAACAGC-T i mm10.chr13 C 0 I 26 s canFam3.chr3 14335602 122 + 91889043 ACACctatgccccagtttccttatctgtaaattggggctatctatcttaaaggctc-------------ctt-gaagaggaattattttaatatttttattcttagcacagtataaacagtgaaatgataactgc-t i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1265456 104 - 11655695 aaacctatacctcagttgtcttgtcagtgagttggagctaTTTATCATAAAGCATA------------ATAT----------------TAATATTTGTGTGCTTGACACAGTATAAACA----AATGATAGTTAT-A i dasNov3.JH570378 C 0 C 0 a score=34499.000000 s hg38.chr5_GL383530v1_alt 74832 4 + 101241 gtta-- s panTro5.chr5 20308739 4 + 181907262 gtta-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20321064 4 + 183735486 gtta-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4807719 4 - 13748885 gtta-- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53840296 4 - 163208435 gtta-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87863093 4 - 180051392 GTTA-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87967517 4 - 181584905 GTTA-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1194991 4 - 8785636 GTTA-- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1658678 4 + 27333823 GTTA-- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1928289 4 - 91010382 GTTA-- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2047708 4 + 5179401 GTTA-- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7750517 4 - 21726897 GTTA-- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112560083 3 + 204313951 att--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45013499 4 + 71252344 atta-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 372609 4 - 1393929 atta-- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1445060 4 - 15889662 attG-- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84842646 4 + 108143057 ATTA-- i micMur3.chr12 C 0 I 165 s otoGar3.GL873536 1326794 4 - 29863360 CCTA-- i otoGar3.GL873536 I 3 C 0 s mm10.chr13 76482355 4 + 120421639 GTTA-- i mm10.chr13 I 26 I 31 s canFam3.chr3 14335724 4 + 91889043 atta-- i canFam3.chr3 C 0 I 9 s dasNov3.JH570378 1265560 6 - 11655695 GTAATA i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 632371 133 - 10520994 I a score=243954.000000 s hg38.chr5_GL383530v1_alt 74836 31 + 101241 ------------------------------------------------------------------ATGTTACCAA---------------------------CAT--------AAGGAACATATATGTATC s panTro5.chr5 20308743 31 + 181907262 ------------------------------------------------------------------ATGTTACCAA---------------------------CAT--------AAGGAATATATATGTATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20321068 31 + 183735486 ------------------------------------------------------------------ATGTTACCAA---------------------------CAT--------AAGGAATATATATGTATC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4807723 31 - 13748885 ------------------------------------------------------------------ATGTTACCAA---------------------------CAT--------AAGGAATATATATGTATC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53840300 31 - 163208435 ------------------------------------------------------------------ATATTACCAA---------------------------TAT--------AAGGAATGTATATGTATC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87863097 31 - 180051392 ------------------------------------------------------------------ATGTTACCGA---------------------------TAT--------AAGGAATGTATATATATC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87967521 31 - 181584905 ------------------------------------------------------------------ATGTTACCGA---------------------------TAT--------AAGGAATGTATATATATC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1194995 31 - 8785636 ------------------------------------------------------------------ATGTTACCGA---------------------------TAT--------AAGGAATGTATGTATATC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1658682 31 + 27333823 ------------------------------------------------------------------ATGTTACCAA---------------------------TAT--------AAGGAATGTATATATATC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1928293 31 - 91010382 ------------------------------------------------------------------ATGTTACCAA---------------------------TAT--------AAGGAATGTATATGTATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2047712 31 + 5179401 ------------------------------------------------------------------ATGTTACCGA---------------------------TAT--------AAGGAATGTATATATATC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7750521 31 - 21726897 ------------------------------------------------------------------ATGTTACCAA---------------------------TAT--------AAGGAATGTATATGTATC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112560086 31 + 204313951 ------------------------------------------------------------------atGTTATCAA---------------------------TAT--------AGAGAATGTGTATGTAAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45013503 31 + 71252344 ------------------------------------------------------------------ATGTTATCAA---------------------------TAT--------AGAGCATGTGTATGTAAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 372613 31 - 1393929 ------------------------------------------------------------------ATGTTATCAA---------------------------TAT--------AGAGAATGTATATGTAAC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1445064 31 - 15889662 ------------------------------------------------------------------ATGTTATCAA---------------------------TAT--------AGAGAATGTGTATGTAAC i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1326798 31 - 29863360 ------------------------------------------------------------------ATATTACTAT---------------------------TGT--------GAAAAGTATTTGAATATA i otoGar3.GL873536 C 0 I 94 s mm10.chr13 76482390 27 + 120421639 ------------------------------------------------------------------ATTTTTCCAA---------------------------CAT--------AGGAAATATGTGAC---- i mm10.chr13 I 31 C 0 s canFam3.chr3 14335737 39 + 91889043 ------------------------------------------------------------------TTGTTGTTGA---------------------------AATATAGTTAGAAGAAACATGTGAGAAAA i canFam3.chr3 I 9 I 66 s dasNov3.JH570378 1265566 118 - 11655695 ATATTGAAATACAGCCTTAAGAAAAACTCTTAAGGCTAAATAAAAGAGGGATAACTAATTATAAAAATTTAACCAAATTATCCAGTCTTTTTAAATTTTGTAGTAT--------AGAGAATATGTG------ i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84842650 165 + 108143057 I e proCoq1.NW_012147189v1 632371 133 - 10520994 I a score=317535.000000 s hg38.chr5_GL383530v1_alt 74867 33 + 101241 TTTACTTTGT-TTTC-------------------------------------TCTAGTATAAGCCGTATCC-- s panTro5.chr5 20308774 33 + 181907262 TTTACTTTGT-TTTC-------------------------------------TCTAGTATAAGCCATATCC-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20321099 33 + 183735486 TTTACTTTGT-TTTC-------------------------------------TCTAGTATAAGCCGTATCC-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4807754 33 - 13748885 TTTACTTTGT-TTTC-------------------------------------TCTAGTATAAGCCGTATCC-- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53840331 33 - 163208435 TTTACTTTGT-TTTC-------------------------------------TCTAGTATAAGCCATATCT-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87863128 30 - 180051392 T---TTTTAT-TTTC-------------------------------------TCCAGTATAAGCCATATCT-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87967552 30 - 181584905 T---TTTTAT-TTTC-------------------------------------TCCAGTATAAGCCATATCT-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1195026 30 - 8785636 T---TTTTAT-TTTC-------------------------------------TCCAGTATAAGCCATATCT-- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1658713 30 + 27333823 T---TTTTAT-TTTC-------------------------------------TCCAGTATAAGCCATATCT-- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1928324 33 - 91010382 TTTATTTTAT-TTTC-------------------------------------TCCAGTATAAGCCATATCT-- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2047743 30 + 5179401 T---TTTTAG-TTTC-------------------------------------TCCAGTATAAGCCATATCT-- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7750552 33 - 21726897 TTTACTTTGT-TTTC-------------------------------------TCCAGTATAAGCCATATCT-- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112560117 33 + 204313951 TTTACTTTGT-TTCC-------------------------------------TCTAGTGTAAACTGTATCT-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45013534 33 + 71252344 TTTACTTTGT-TTTC-------------------------------------TCTAGTGTAAGCCATATCT-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 372644 33 - 1393929 TTGACTTTGT-TTTC-------------------------------------TCTAGTGTAAGCTGTATCT-- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1445095 33 - 15889662 TTTACTTTGT-TTTC-------------------------------------TCTAGTGTAAGCTCTATCT-- i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 632504 34 - 10520994 TTTACTTTGTTTTTG-------------------------------------TCTAGTATAAGCTATACCT-- i proCoq1.NW_012147189v1 I 133 I 2 s otoGar3.GL873536 1326923 34 - 29863360 TTTATTTTGTGTTTA-------------------------------------TCTAGTATAAGCTGTATCT-- i otoGar3.GL873536 I 94 I 1 s mm10.chr13 76482417 27 + 120421639 -TTGATTAGC-TTTC------------------------------------ATCTAG------CTATAGTT-- i mm10.chr13 C 0 I 1 s canFam3.chr3 14335842 70 + 91889043 TCTTTTTTAT-TTTCTGATATAGGGAATAGATGTGAGTTACTTCTGTTTTTGTCTCATATAAGCTGTATCT-- i canFam3.chr3 I 66 I 2 s dasNov3.JH570378 1265684 27 - 11655695 TTTGCTTTTT-TTGT-------------------------------------CCCA--------TATATCTCT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84842650 165 + 108143057 I a score=597745.000000 s hg38.chr5_GL383530v1_alt 74900 36 + 101241 CTGCATTTATTCAGCACAGACTTGGAGAGCTCAGCA s panTro5.chr5 20308807 36 + 181907262 CTGCATTTATTCAGCACAGACTTGGAGAGCTCAGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20321132 36 + 183735486 CTGCATTTATTCAGCACAGACTTGGAGAGCTCAGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4807787 36 - 13748885 CTGCATTTATTCAGCACAGACTTGGAGAGCTCAGCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53840364 36 - 163208435 CTGCATTTATTCAGCACAGACTTGGAGAGCTCAGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87863158 36 - 180051392 CTGCATTTATTCAGCACAGACTTGGGGAGCTCAGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87967582 36 - 181584905 CTGCATTTATTCAGCACAGACTTGGGGAGCTCAGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1195056 36 - 8785636 CTGCATTTATTCAGCACAGACTTGGGGAGCTCAGCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1658743 36 + 27333823 CTGCATTTATTCAGCACAGACTTGGGGAGCTCAGCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1928357 36 - 91010382 CTGCATTTATTCAGTGCAGACTTGGGGAGCTCAGCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2047773 36 + 5179401 CTGCATTTATTCAGCACAGATTTGGGGAGCTCAGCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7750585 36 - 21726897 CTGCATTTATTCAGCACAGACTTGGGGAGCTCAGCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112560150 32 + 204313951 CTGCATTTATTCAGCACAGACTT----AGCGTCGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45013567 36 + 71252344 CTGCATTTATTCAGCACAGACTTACGGAGTGTAACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 372677 36 - 1393929 CTGCATTTATTCAGCACAGCCTTAGGGAGCGCAGCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1445128 36 - 15889662 CTGCATTTATTCAGCACAGACTTAGGAAGCGCAGCA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84842815 36 + 108143057 CTGCATTTATTCAGCACAGAGTCAGGGAGCTCAGCA i micMur3.chr12 I 165 C 0 s proCoq1.NW_012147189v1 632540 36 - 10520994 CTGCATTTATTCAGCACAGACTCAGGGAGCTCAGCA i proCoq1.NW_012147189v1 I 2 C 0 s otoGar3.GL873536 1326958 36 - 29863360 CTGCATTTATTCAGTACAGACTTGGGGAGCTCAGCA i otoGar3.GL873536 I 1 C 0 s mm10.chr13 76482445 35 + 120421639 TTTTAATTATTCAGCATAAACTTAG-GAACTCACTG i mm10.chr13 I 1 C 0 s canFam3.chr3 14335914 36 + 91889043 CTGCCTCTATTCAGCACAGACTCGGAGAGCACAATA i canFam3.chr3 I 2 I 202 s dasNov3.JH570378 1265711 36 - 11655695 CTGAATTTATTCAGCGCACATGGAGGGAGTTCAATG i dasNov3.JH570378 C 0 C 0 a score=6687880.000000 s hg38.chr5_GL383530v1_alt 74936 456 + 101241 TAAAATATAGTCAGGTTTTCAAGATATTTGTCTGCTCAGACACT-TAAAAATTTGGTGGAAGACACAGCATTTGCTCCTAGTAGCGATAAACATATCC-AGGAATGAGCTGGCATACTA--AGCTCAGTGGTCTCCTA-TTT--GGCCCAGTGTAGAGATTTTAGAAAGGC-GGGGGACCACATATAAAGAAAATAATTGAGCA------TCTTCAGAATGCAATCTAATAGCTAGCTTTATCACCTTCCCAGGAATGTGTGCTTAAT-AAAATAAGTCTT-GGAGAACATTTACACATTGGTACTATGTTAGAGAAA-GGTCTTTAATCCC-TCTTTGGGAATTAACACACATATCA-TTTTTACTTCTATACATA--TAAAATATTTATTCTTCCCACCAAGAGCTATACTGCTGCTGTTGAAATCTGGGTCTAGGAATTATTGTTTACATCTCAGCTCGGTCACTTTA----TACCCC s panTro5.chr5 20308843 456 + 181907262 TAAAATATAGTCAGGTTTTCAAGATATTTGTCTGCTCAGACGCT-TAAAAATTTGGTGGAAGACACAGCATTTGCTCCTAGTAGCGATAAACATATCC-AGGAATGAGCTGGCATACTA--AGCTCAGTGGTCTCCTA-TTT--GGCCCAGTGTAGAGATTTTAGAAAGGC-GGGGGACCACATATAAAGAAAATAATTGAGCA------TCTTCAGAATGCAATCTAATAGCTAGCTTTATCACCTTCCCAGGAATGTGTGCTTAAT-GAAATAAGTCTT-GGAGAACATTTACACATTGGTACTATGTTAGAGAAA-GGTCTTTAATCCC-TCTTTGGGAATTAACACACATATCA-TTTTTACTTCTATACATA--TAAAATATTTATTCTTCCCACCAAGAGCTATACTGCTGCTGTTGAAATCTGGGTCTAGGAATTATTGTTTACATCTCAGCTCAGTCACTTTA----TACCCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20321168 456 + 183735486 TAAAATATAGTCAGGTTTTCAAGATATTTGTCTGCTCAGACACT-TAAAAATTTGGTGGAAGACACAGCATTTGCTCCTAGTAGCGATAAACATATCC-AGGAATGAGCTGGCATACTA--AGCTCAGTGGTCTCCTA-TTT--GGCCCAGTGTAGAGATTTTAGAAAGGC-GGGGGACCACATATAAAGAAAATAATTGAGCA------TCTTCAGAATGCAATCTAATAGCTAGCTTTATCACCTTCCCAGGAATGTGTGCTTAAT-GAAATAAGTCTT-GGAGAACATTTACACATTGGTACTATGTTAGAGAAA-GGTCTTTAATCCC-TCTTTGGGAATTAACACACATATCA-TTTTTACTTCTATACATA--TAAAATATTTATTCTTCCCACCAAGAGCTATACTGCTGCTGTTGAAATCTGGGTCTAGGAATTATTGTTTACATCTCAGCTCAGTCACTTTA----TACCCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4807823 454 - 13748885 TAAAATATAGTCAGGTTTTCAAGATATTTGTCTGCTCAGACACT-TAAAAATTTGGTGGAAGACACAGCATTTGCTCCTAGTAGCAATAAACATATCC-AGGAATGAGCTGGCATACTA--AGCTCAGTGGTCTCCTA-TTT--GGCCCAGTGTAGAGATTTTAGAAAGGC-GGGGGACCACATATAAAG-AAATAATTGAGCA------TCTTCAGAATGCAATCTAATAGCTAGCTTTATCACTTTCCCAGGAATGTGTGCTTAAT-AAAATAAGTCTT-GGAGAACATTTACACATTGGTACTATGTTAGAGGAA-GGT-TTTAATCCC-TCTTTGGGAATTAACACACATATCA-TTTTTACTTCTATACATA--TAAAATATTTATTCTTCCCACCAAGAGCTATACTGCTGCTGTTGAAATCTGGGTCTAGGAATTATTGTTTACATCTCAGCTCAGTCACTTTA----TACCCC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53840400 437 - 163208435 TGAAATATAGTCAGGTTTTCAAGATATTTGTCTGCTCAGACACT-TAAAAATTTGGTGGAAGACAAAGCATTTGCTCCTAGTAGCAATGAACATATCC-AGGAATGAGCTGGCATACTA--AGCTCAGCGGTCTCCTA-TTT--GGCCCAGTGTAGAGATTTTAGAAAGGC-GGGGGACCACATATAAAGAAAATAATTGAGCA------TCTTCAGAATGTAATCTAATAGCTAGCTTTATCACCTTCCCAGGAAGG------TAAT-AAAATGAGTCTT-GGAGAACATTTACACATTGGTACTGTATTAGAGAAA-GGTCTTTAATCCC-TCTTTGGGAATTAA---------CA-TTTTTACTTCTATACGTA--TAAAA----TATTCTTCCCACCAAGAGCTATACTGCTGCTGTTGAAATCTGGGTCTAGCAATTATTGTTTACATCTCAGCTCAGTCACTTTA----TACCCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87863194 456 - 180051392 TAAAATATCATCAGGTTTTCAAGATGTTTGTCTGCTTAGACACC-TAAAAATTTGGTGGAAGACACAGCATTTGCTCCTAGGAGCAATGAACATATCC-AGGAATGAGCTGGCATACTA--AGCTCAGTGGTCTCCTA-TTT--GGCCCAGTGTAGAGATTTTAGAAAGGT-GAGGGTCCACATATAAATAAAATAATTGAGCA------TCTTCAGAATGCAATCTAATAGCTAGCTTTATCACCTTCCCAGGAATGTGTGCTTAAT-AAAGTAAGTCTT-GGAGAACATTTACACACTGCTACTATATTAGAGGAA-GGTCTTTAATCCC-TCTTTGGGAATTAACACACATATCA-CTTTTACTTCTATACGTA--TAAAATATTTATTCTTCTCACCAAGAGCTATACTGCTGCTGTTGAAATCTGGGTCTAGGAATTATTGTTTACATCTCAGCTCAATCACTTTA----TACCCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87967618 456 - 181584905 TAAAATATCATCAGGTTTTCAAGATGTTTGTCTGCTTAGACACC-TAAAAATTTGGTGGAAGACACAGCATTTGCTCCTAGGAGCAATGAACATATCC-AGGAATGAGCTGGCATACTA--AGCTCAGTGGTCTCCTA-TTT--GGCCCAGTGTAGAGATTTTAGAAAGGT-GAGGGTCCACATATAAATAAAATAATTGAGCA------TCTTCAGAATGCAATCTAATAGCTAGCTTTATCACCTTCCCAGGAATGTGTGCTTAAT-AAAGTAAGTCTT-GGAGAACATTTACACACTGCTACTATATTAGAGGAA-GGTCTTTAATCCC-TCTTTGGGAATTAACACACATATCA-TTTTTACTTCTATACGTA--TAAAATATTTATTCTTCCCACCAAGAGCTATACTGCTGCTGTTGAAATCTGGGTCTAGGAATTATTGTTTACATCTCAGCTCAATCACTTTA----TACCCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1195092 456 - 8785636 TAAAATATCATCAGGTTTTCAAGATGTTTGTCTGCTTAGACACC-TAAAAATTTGGTGGAAGACACAGCATTTGCTCCTAGGAGCAATGAACATATCC-AGGAATGAGCTGGCATACTA--AGCTCAGTGGTCTCCTA-TTT--GGCCCAGTGTAGAGATTTTAAAAAGGT-GAGGGTCCACATATAAATAAAATAATTGAGCA------TCTTCAGAATGCAATCTAATAGCTAGCTTTATCACCTTCCCAGGAATGTGTGCTTAAT-AAAGTAAGTCTT-GGAGAACATTTACACACTGCTACTATATTAGAGGAA-GGTCTTTAATCCC-TCTTTGGGAATTAACACACATATCA-TTTTTACTTCTATACGTA--TAAAATATTTATTCTTCCCACCAAGAGCTATACTGCTGCTGTTGAAATCTGGGTCTAGGAATTATTGTTTACATCTCAGCTCAATCACTTTA----TACCCC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1658779 456 + 27333823 TAAAATATCATCAGGTTTTCAAGATATTTGTCTGCTGAGACACC-TAAAAATTTGGTGGAAGACACAGCATTTGCTCCTAGGAGCAATGAACATATCC-AGGAATGAGCTGGCATACTA--AGCTCGGTGGTCTCCTA-TTT--GGCCCAGTGTAGAGATTTTAGAAAGGT-GAGGGTCCACATATAAATAAAATAATTGAGCA------CCTTCAGAATGCAATCTAATAGCTAGCTTTATCACCTTCCCAGGAATGTGTGCTTAAT-AAAATAAGTCTT-GGAGAACATTTACACACTGCTACTATATTAGAGGAA-GGTCTTTAATCCC-TTTTTGGGAATTAACACACATATCA-TTTTTACTTCTATACGTA--TAAAATATTTATTCTTCCCACCAAGAGCTATACTGCTGCTGTTGAAATCTGGGTCTAGGAATTATTGTTTACATCTCAGCTCAATCACTTTA----TACCCC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1928393 456 - 91010382 TAAAATATAGTCAGGTTTTCAAGATATTTGTCTGCTTAGACACT-TAAAAATTTGGTGGAAGACACAGCATTTGCTCCTAGTAGCAATGAACATATCC-AGGAATGAGCTGGCATACTA--AGCTCAGTGGTCTCCTA-ATT--GGCCCAGTGTAGAGATTTTAGAAAGGT-GAGGGTCCACATATAAAGAAAATAATTGAGCA------TCTTCGGAATGCAATCTAATAGCTAGCTTTATCACCTTCCCAGGAATGTGTGCTTAAT-AAAATAAGTCTT-GGAGAACATTTACACACTGCTACGATATTAGAGGAA-GGTCTTTACTCCC-TCTTTGGGAATTAACACACATATCA-TTTTTACTTCCATATGTA--TAAACTATTTATTCTTCCCACCAAGAGCTATACTGCTGCTGTTGAAATCTGGGTCTAGGAATTATTGTTTACATCTCAGCTCAATCACTTTA----TACCTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2047809 456 + 5179401 TAAAATATCATCAGGTTTTCAAGATATTTGTCTGCTTAGACACC-TAAAAATTTGGTGGAAGACACAGCATTTGCTCCTAGGAGCAATGAACATATCC-AGGAATGAGCTGGCATACTA--AGCTCAGTGGTCTCCTA-TTT--GGCCCAGTGTAGAGATTTTAGAAAGGT-GAGGGTCCACATATAAATAAAATAATTGAGCA------CCTTCAGAATGCAATCTAATAGCTAGCTTTATCACCTTCCCAGGAATGTGTGCTTAAT-AAAATAAGTCTT-GGAGAACATTTACACACTGCTACTATATTAGAGGAA-GGTCTTTAATCCC-TCTTTGGAAATTAACACACATATCA-TTTTTACTTCTATACGTA--TAAAATATTTATTCTTCCCACCAAGAGCTATACTGCTGCTGTTGAAATCTGGGTCTAGGAATTATTGCTTACATCTCAGCTCAATCACTTTA----TACCCC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7750621 457 - 21726897 TAAAATACAGTCAGATTTTCAAGATATTTGTCTGCCTAGACACT-TAAAAATTTGATGGAAGACACAGCATTTGCTCCTAGTAGCAATGAACATATCC-AGGAATGAGCTGGCATACTA--AGCTCAGTGGTCTCCTA-TTT--GGCCCAGTGTAGAGATTTTAGAAAGGT-GAGGGTCCACATATAAAGAAAATAATTGAGCA------TCTTCAGAATGCAATCTAAAAGCTAGCTTTATCACCTACCCAGGAATGTGTGCTTAAT-AAAATAAGTCTT-GGAGAACATTTACACACTGCTACTATATTAGAGGAA-GGTCTTTAATCCCTTCTTTGGGAATTAACACACATATCA-TTTTTACTTGTATACACA--TAAAATATTTATTCTTCCCACCAAGAGCTATACTGCTGCTGTTGAAATCCGGGTCTAGGAATTATTGCTTACATCTCAGCTCATTCACTTTA----TACCCC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112560182 446 + 204313951 TAAAAT--AGTCAGGTTTTTAAGATACTTGACTTCTCAGACACT-TAAAAATTTGGTGGAAGACACACTA-TTGCTCC---TAGCAGTGAACATATCC-AGGAATGAGCTGACATACTA--AGCTCAGTAGTCTCCTA-TTT--GGCCCAGTGTAGAGATTTTAGAAAGGT-AAGGGACTCCACATAAAGGAAATAATTGAGCA------TCTTCAGAATGCAATCTAATGGCTAGCTTTATCATCTTCCCAGGAATGTGCGCTTAAT-AAAATAAGTCTT-GGAGAACATTTACACACTGGTAATATATTAGAGAAA-GGTCTTTAATCCC-TTTTTGGGAATTAGCACACATATCA-TTTTTACTTCTATACATA--TAAAG----TATTCTTCCCACCAAGAGCTATAGTGCTGCTGTTGAAATCTGGGTCTAGATATTATTGTTTACATCTCAGCTCAGTCATTGTA----TACCCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45013603 455 + 71252344 TAAAATACAGTCAAGTTTTTAAGATACTTGACTTCTCAGACACT-TAAAAATTTGGTGGAAGACACACCGTTTGCTCCTAGTAGCAATGAACATATCC-AGGAATGAGCTGACATACTCGTAGCTCAGTGGTCTCCTATTTT--GGCCCAGTGTAGAGATTTTAGAAAGGT-GAGGGACCACACATAAGGGAAATAATTGAGCA------TCTTCAGAATGCAGTCTAATGGCTAGCTTTATCATCTTCCCAGAAATGTACACTTAAT-AAAATAAATCTT-GGAGAACATTTACACACTGGTAATATGTTAGAGAAA-GGTCTTTAATCCC-TTTTTGGGAATTAGCACACATACCG-TTTTTACTTCTATACATA--TAAAA----TATTCTTCTCACCAAGAGCTATACTGCTGCTATTGAAATCTGGGTCTAGATATTATTGTTTACATCTCAGCTCAGTCATTGTA----TTCCCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 372713 452 - 1393929 TAAAATACAGCCAGGTTTTTAAGATACTTGACTTCTTAGACACT-TAAAAATTTGGTGAAAGACACACCGTTTGCTCCTAGTAGCAAAGAACATATCC-AGGAATGAGCTGACATACTA--AGCTCAGTGGTCTCCTA-TTT--GGCCCAGTGTAGAGATTTTAGAAAGAT-GAAGGACCGTAGATAAAGGAAATAATTGAGCA------TCTTCAGAATGCAATCTAATGGCTAGCTTTATCATCTTCCCAGAAATGTACACTTAAT-AAAATAAGTCTT-GGAGAACATTTACACACTGGTAATATATTAGAGAAA-GGTCTTTAATCCC-TTTTTGGGAATTAGCACACATATCA-TTTTTACTTCTATACATA--TAAAA----TATTCTTCCCACCAAGAGCTATACTGCTGCTGTTGAAATCTGGGTCTAGATATTATTGTTTATACCTCAGCTCAGTCATTGTA----TACCCC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1445164 443 - 15889662 TAAAATACAGTCAGGTTTTTAAGATACTTGACTT---------T-TAAAAATTTGGTGGAAGACACACCGTTTGCTCCTAGTAGCAATGAACATATCC-AGGAATGAGCTGACATACTA--AGCTCAGTGGTCTCCTA-TTT--GGCCCAGTGTAGAGATTTTAGAAAGGT-GAGGGACCGCACATAAAGGAAAAAATTGAGCA------TCTTCAGAATGCAATCTAACGGCTAGCTTTATCATCTTCCCAGGAATGTGCGCTCAGT-AAAATAAGTCTT-GGAGAACATTTACACACCGGTAATATATTAGAGAAA-GATCTTTAATCCC-TTTTTGGGAATTAGCACACATATCA-TTTTTACTGCTGTACATT--TAAAA----TATTCTTCCCACCAAGAGCTATACTGCTGCTGTTGAAATCTGGGTCTAGATATTATTGTTTACATCTCAGCTCAGTCATTGTA----TACTCC i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84842851 452 + 108143057 TAGAATATGATCA--TTTCC-AGATATTTGTCTTCTCAGACACT-TAAAAATTTGACAGAGGGCACA-CATTTGCTCTTAGTAGTGAAGAAGATACTC-AGGAATCAGCTAGCATAATG--AGTTCAGTGGTCTCCTG-TTC--GGCCCAGTGTAGGGATTTCAGAAAGGC-GAGGGGGCACATTCAAAGGAAATAATTGCACA------TTTTCAGAATGCAGTCTCACGGCTAGCTTCATCATCTTCCGAGGAATGTGTGCTTAATAAAAATAAGTCTT-GGAGAACATTTGAACAGTGGTAATGTATTAGAGAAA-GATCTTTAATCTC-TCTTTGAGAATTAATACATGTATCA-TTTTTACTTCTATACATC--TAAAAT-ATTATTCCTCCCACCAAGAGGCATACTGCTATCATTGAAATCTGGGTGTAGGAATTACTACTAAGCTCCCAGCTTAGTCATTGTG----TACCCC i micMur3.chr12 C 0 I 30 s proCoq1.NW_012147189v1 632576 450 - 10520994 TAGGGTATAGTCA--TTTCC-AGATATTTGTCTTCTCAGACGCT-TAAAAATTTGGTAAAGGGTACAGCGTTTGCTCTTAGTAGTGAAGAAGATATTC-AGGAATCAGCCAGCATAATG--AGTTCAGTGGTCTCCTG-TTC--GGCCCAGTGTAGAGATTTCAGAAGGGC-GGGGGGCCACATTTAAAGGAAATAATGGAGCA------TTTTCAGAATGCAGTCTCACGGCTAGCTTTATCATCTTCCCAGGAATGTGTGCTTAATAGAAATAAGTCTT-GGAGAACATTTG-GTGCTGGTAATGTATTAGAGAAA-TATCTTTAATCTC-CCTTTGGGAATTAACACTTG--TCA-TTTTCACTTCTATACATC--TAAAAT-TTTATTCCTCCCACCAAGAGGTATACTGCTACCATTGAAATCTGAGTCTAGGAATTATTACTCACCTCCCAGCTTAGTCATTGTG----TGCCCC i proCoq1.NW_012147189v1 C 0 I 1 s otoGar3.GL873536 1326994 440 - 29863360 TAGAATAGAGTTG--TTTCCAAGATATTTGTTTTCTCAGACACT-TAAAAATTTGGCAGTGGGCACAGTATTTGCTCTTAGCAGTGAA-------------GAATTAGCTGGAATGATG--AATTCTGTGGTCTCCTA-TCTGGGGCCCAGCATAGAGATTTCGGAAAGGCAAGGGGGCCACGTTTAAAGGGAATAATTGCTCA-------TTTCAGAATGTAATCTTATGGC------CATCATCTTTCCAGGAATGTGTGCTTAATGAAAATAGGTCTTGGGAGAATATTCAAAAACTTGAAATGTATTAGAGAAA-GATCTTTATTCTC-CCCTTGGGAATTAATGCATGTATCAGTTTTTACTTCTATCTATC--TAAAATATTTATTCCTTCCGGTAAAAGCTATCCTGCTACCACTGAAATCTG-GTCTAAAAATTATCACTTATCTCTCAGCTTGGTCATTCTG----TGTCCC i otoGar3.GL873536 C 0 I 1 s mm10.chr13 76482480 442 + 120421639 CAAAACAAAGTCCTCTTTCTAAGATATTTGTCTGCACAGCCACT-T-AAGGTTTGGCAGAGGGTGTAGTACTTAGTCTTAATTATGACAAAAATATCC-AGGAACGAACTGGCATGCTG--AGCTCAGTGGTCTCCTA-TTG--AGCTCAGTGTGCAGATTTC---AAGGT-ATGCGACCAAACATAAGGCAAATAATTAGACCTTTTTTTTTTTGTACTACAATGTCACAGGTCGATTTATTCTCTTCTGAAGAACTTCTACTTAAT-AAAATAAGGTTA-TGAGGGCATCTACAATCTG-CAGTGTATTAGAAAAATGACTTTTAATTCT-CTCTTGGGAATCAAGATACATTCTA----------CTATACA-----AAAATA--TATTCTTTTCACCAAGAGGTACCTTGATGCTATTGAATTCTGAACTGAGGAGTCATTACCTGCCT-TTAGCCTAGTTG-TGTA----TGAGCC i mm10.chr13 C 0 I 1 s canFam3.chr3 14336152 384 + 91889043 taaaaTATGGTCAGGTTACCAAGATATATGTTTAATCAGTCCCTATTAAAATTTGATAGAGGGCACAGCACTTATTCTTAAGAGTGATGAGAATACCTAAGGAGTGAGCCAGCACACTG--AGCTCAA------CCTC-TCT--GGCCCAATGC--AGATTTCAAAAAGAT-GAGGGATCACATATAAAGGAAAGAACTGAACG------TTTTCAGAATATGGTCTCGTGGCTGGCATTCTCATCTTCCCA----------------------------C--------------------------------------ATCCTTTAATCTC-CCTTTGGGTACTAACTCATATATCC-CTCTAACTTTTATATGCA--TAAAATA---ACTTTTATATGTATGAGCCATACTGCTACCATTGAAATCTGGGTCTAGGAATTATTATTTACTTCTGAGTGTCATCATTTTA----TGCCCA i canFam3.chr3 I 202 I 1 s dasNov3.JH570378 1265747 443 - 11655695 CAAAAGATAGGCAGGTTCCCAAGATATTTGTCTGATAAGGCACT-TTAAAATT--------GGCATAGCACTTACTCTTAATGGCGATGAAAATATCC-AGATATGAG------TCTTC--TCGTCAGTGATCTCCTT-TTA--GGCCCAGAGGAGAGATTTCAGAAAGAT-GAGGGACTGCAAGTAAAGGAAACAATTGAACA------TTTGCAGAATGTGATCTCATGGCTAGCTTTGTCATCTTCCCAGGAATGTGTGCTTAAT-AAAATATGTCTT-GATGAATATTAAAAAACTGGTAATATATTAAAGAAA-GATCTT-----CC-CTTTTGGAAATTAACTTATATATCA-CTCCaaattttatatatatttaaaagatttattCTTCCCTCCAAGAGCTCTACTGCTACTCTTGAACTCTGTGTCTAGGAATGATTATTTACCTCCCAACTTCATCATTTTAATCTTATTCC i dasNov3.JH570378 C 0 C 0 a score=427942.000000 s hg38.chr5_GL383530v1_alt 75392 35 + 101241 TCTCTGCTGTGT---TTATGTTGAAGATTCTAAGCTGC s panTro5.chr5 20309299 35 + 181907262 TCTCTGCTGTGT---TTATGTTGAAGATTCTAAGCTGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20321624 35 + 183735486 TCTCTGCTGTGT---TTATGTTGAAGATTCTAAGCTGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4808277 35 - 13748885 TCTCTGCTGTGT---TTATGTTGAAGATTCTAAGCTGC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53840837 35 - 163208435 TCTCTGCTGTGT---TTATGTTGAAGATTCTAAGCTGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87863650 35 - 180051392 TCTCTGCTGTGT---TTATGTTGAAGATTCTAAGCTGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87968074 35 - 181584905 TCTCTGCTGTGT---TTATGTTGAAGATTCTAAGCTGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1195548 35 - 8785636 TCTCTGCTGTGT---TTATGTTGAAGATTCTAAGCTGC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1659235 35 + 27333823 TCTCTGCTGTGT---TTATGTTGAAGATTCTAAGCTGC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1928849 35 - 91010382 TCTCTGCTGTGT---TTATGTTGAAGATTCTAAGCTGC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2048265 35 + 5179401 TCTCTGCTGTGT---TTGTGTTGAAGATTCTAAGCTGC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7751078 35 - 21726897 TCTCTGCTGTGT---TTATGTTGAAGATTCTAAGCTGC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112560628 35 + 204313951 TCTCTCCTTTGT---TTATGTTGAAGATTCTAAGCTGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45014058 35 + 71252344 TCTCTCCTTTGT---TTATGCTGAGGATTCTAAGCTGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 373165 35 - 1393929 TCTCTCCTTTGT---TTATGGTGAAGATTCTAAGCTGC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1445607 35 - 15889662 TCTCTCCTTTGT---TTATGTTGAAGATTCTAAGCTGC i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 633027 29 - 10520994 TCTTCCCCATGT---TTATTTTGAAGTTTCTA------ i proCoq1.NW_012147189v1 I 1 C 0 s otoGar3.GL873536 1327435 35 - 29863360 TCTTTCTCATGT---TAATCTTGAAGATTCTAAGCTGC i otoGar3.GL873536 I 1 C 0 s mm10.chr13 76482923 20 + 120421639 TCTCTC------------------AGATTCTAAACTGC i mm10.chr13 I 1 C 0 s canFam3.chr3 14336537 29 + 91889043 TCTTCCCTGTGTCAGTTATTTCAGA------AAGC--- i canFam3.chr3 I 1 C 0 s dasNov3.JH570378 1266190 30 - 11655695 -TCCCATGTTGT---TTATTT----GATTCTAAGCCTC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84843303 30 + 108143057 I a score=2399687.000000 s hg38.chr5_GL383530v1_alt 75427 152 + 101241 CTTAGCGCTCTATCAACTCGGCATTTGGATCCAAACTCATATCTTTT---ATGGTGACTGGCTGTCAAATTGGTACTCAATGTACTTTCTGCTCCTGAAACCCTTTCTGC-TCCCCAC-TTTCTTCTCTGATTTT-ATG--TG--TCCTTTAA--------TTTCCTCTT-------- s panTro5.chr5 20309334 153 + 181907262 CTTAGCGCTCTATCAACTGGGCATTTGGATCCAAACTCATATCTTTT---ATGGTGTCTGGCTGTCAAATTGGTACTCAATGTACTTTCTGCTCCTGAAACCCTTTCTGCCTCCCCAC-TTTCTTCTCTGATTTT-ATG--TG--TCCTTTAA--------TTTCCTCTT-------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20321659 152 + 183735486 CTTAGCGCTCTATCAACTGGGCATTTGGATCCAAACTCATATCTTTT---ATGGTGTCTGGCTGTCAAATTGGTACTCAATGTACTTTCTGCTCCTGAAACCCTTTCTGC-CTCCCAA-CTTCTTCTCTGATTTT-ATG--TG--TCCTTTAA--------TTTCCTCTT-------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4808312 152 - 13748885 CTTAGCGCTCTATCAACTGGGCATTTGGATCCAAACCCATATCTTTT---ATGGTGTCTGGCTGTCAAATTGGTACTCAATGTACTTTCTGCTCCTGAAACCCTTTCTGCCTCCCCAC-TTTCTTCTCTGATTTT-ATG--TG--T-CTTTAA--------TTTCCTCTT-------- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53840872 151 - 163208435 CTTAGCGCTCTATCAACTGGGCATTTGGATCCAAACCCATATCTTTT---ATAGTGTCTGGCTGTC-AATTGGTACTCAGTGTACTCTCTGCTCCTGAAACCCTTTCTGC-CTCCCAC-TTTCTTCTCTGATTTT-ATG--TG--TCCTTTAA--------TTTCCTCTT-------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87863685 153 - 180051392 CTCAGCGCTCTATCAACTGGGCATTTGGATCCAAACCCATATCTTTT---ATAGTGTCTGGCTGTCAAATTGGTACTCAGTGTACTCTCTGCTCCTGAAAGCTTTTCTGCCTCCCCAC-TTTCTTCTCTGATTTT-ATG--TG--TCCTTTAA--------TTTCCTCTT-------- i rheMac8.chr6 C 0 I 3 s macFas5.chr6 87968109 153 - 181584905 CTCAGTGCTCTATCAACTGGGCATTTGGATCCAAACCCATATCTTTT---ATAGTGTCTGGCTGTCAAATTGGTACTCAGTGTACTCTCTGCTCCTGAAAGCTTTTCTGCCTCCCCAC-TTTCTTCTCTGATTTT-ATG--TG--TCCTTTAA--------TTTCCTCTT-------- i macFas5.chr6 C 0 I 3 s macNem1.NW_012011400v1 1195583 153 - 8785636 CTCAGTGCTCTATCAACTGGGCATTTGGATCCAAACCCTTATCTTTT---ATAGTGTCTGGCTGTCAAATTGGTACTCAGTGTACTCTCTGCTCCTGAAAGCTTTTCTGCCTCCCCAC-TTTCTTCTCTGATTTT-ATG--TG--TCCTTTAA--------TTTCCTCTT-------- i macNem1.NW_012011400v1 C 0 I 3 s cerAty1.NW_012002401v1 1659270 153 + 27333823 CTCAGTGCTCTATCAACTGGGCGTTTGGATCCAAACCCATATCTTTT---ATAGTGTCTGGCTGTCAAATTGGTACTCAGTGTACTCTCTGCTCCTGAAAGCTTTTCTGCCTCCCCAC-TTTCTTCTCTGATTTT-ATG--TG--TCCTTTAA--------TTTCCTCTT-------- i cerAty1.NW_012002401v1 C 0 I 3 s chlSab2.chr4 1928884 153 - 91010382 CTCAGCACTCTATCAACTGGGCATTTGGATCCAAACCCATATCTTTT---ATAGTGTCTGGCTGTCAGATTGGTACTCAGTGTACTCTCTGCCCCTGAAAGCTTTTCTGCCTCCCCAC-TTTCTTCTCTGATTTT-ATG--TG--TCCTTTAA--------TTTCCTCTT-------- i chlSab2.chr4 C 0 I 3 s manLeu1.NW_012103732v1 2048300 153 + 5179401 CTCAGTGCTCTATCAACTGGGCATTTGGATCCAAACCCATATCTTTT---ATAGTGTCTGGCTGTCAAATTGGTACTCAGTGTACTCACTGCTCCTGAAAGCTTTTCTGCCTCCCCAC-TTTCTTCTCTGATTTT-ATG--TG--TCCTTTAA--------TTTCCTCTT-------- i manLeu1.NW_012103732v1 C 0 I 3 s colAng1.NW_012115488v1 7751113 153 - 21726897 CTCAGTGCTCTATCAACTGGGCATTTGGATCCAAACCCATATCTTTT---ATAGTGTCTGGCTGTCAGATTGGTACTCAGTGTACTCTCTGCTCCTGAAAGCTTTTCAGCCTCCCCAC-TTTCTTCCCTGATTTT-ATG--TG--TCCTTTAA--------TTTCCTCTT-------- i colAng1.NW_012115488v1 C 0 I 3 s calJac3.chr2 112560663 157 + 204313951 CTCAGTGCTCTATCGACTGCGCATTTGGATCCAAACCCATATTTTTTTTTATAGTGTCTGGCTGTCAAATTGCTACTCAGTGTACTCTCTGCTCCTGAAACCCTTTCTGCCTCCCCACTTTTCTTCTCTGATTTT-ATG--TG--TCCTTTAA--------TTTCCTCTT-------- i calJac3.chr2 C 0 I 8 s saiBol1.JH378106 45014093 156 + 71252344 TTCAGTGCTCTATCGACTGGGCATTTGGATCCAAACCCATATTTTTTTTAATAGTGTCTGGCTGTCAAATTGCTACTCGGTATACTCTCTGCTCCTGAAACCCTTTCTGCCTCCCCAC-TTTCTTCTCTGATTTT-ATG--TG--TCCTTTAA--------TTTCCTCTT-------- i saiBol1.JH378106 C 0 I 8 s cebCap1.NW_016107830v1 373200 156 - 1393929 CTCAGTTCTCTATCGACTGGGCATTTGGATCCAAACCCATATTTTTTTTTATAGGGTCTGGCTGTCAAGTTGCTACTCAGTGTACTCTCTGCTCCTGAAACCCTTTCTGCCTCCCCAC-TTTCTTCTCTGGTTTT-ATG--TG--TTCTTTAA--------TTTCCTCTT-------- i cebCap1.NW_016107830v1 C 0 I 8 s aotNan1.NW_018506370v1 1445642 155 - 15889662 CTCAGTGCTCTATCGACTGGGCATTTGGATCTAAACCTATATTTTTTTT-ATAGTGTCTGGCTGTCAAATTGCTACTCAGTGTACTCTCTGCTCCTGAAACCCTTTCTGCCTCCCCAC-TTTCTTCTCTGATTTT-ATG--TG--TCCTTTAA--------TTTCCTCTT-------- i aotNan1.NW_018506370v1 C 0 I 8 s micMur3.chr12 84843333 152 + 108143057 CTCAGTGCTCTATCGACTGGGCATTTGGATCCAAACCCATAACTTTT---ATGGTGTCTGGCTGTCAAATT-GCACTCAGTGTACTGTCTGCTCCTAAAATCCTTTCTGCTCCCTCCT-TTCCTTCTCCGGTTTT-ATG--TG--TCCTTTAA--------TTTCCCCTT-------- i micMur3.chr12 I 30 I 132 s proCoq1.NW_012147189v1 633056 151 - 10520994 CTCAGTGCTCTATCAACTGGGCATTTGGATCCAAACTCATAACTTTT---ATAGTGTCTGGCTGTCGAATT-GCA-TTAGTGTACTGTCTGCTCCTAAAATCCTTTCTGGTGCCTCCT-TTCCTTCTCTGATTTT-ATG--TG--TCCTTTAA--------TTCTCCCTT-------- i proCoq1.NW_012147189v1 C 0 I 7 s otoGar3.GL873536 1327470 153 - 29863360 CCCAGAGCTCTATCGATGGGGCACTGGGATCCAAGCCCTTAGCTTTT---ATAGTGTCTGGCTGTCACACTGGCTCTCAATGTCCTGTCTGCTCCTGAAACCAGGTCTGCTGCCTCCT-TTCCTTATCTGATTTT-ATG--TA--TCCTTTAA--------TTCCCTGTT-------- i otoGar3.GL873536 C 0 I 8 s mm10.chr13 76482943 160 + 120421639 TCCAATCCTGTATCTA-TGGGCATTTGGATTCTAATCACAACCTTTT---ATAGTACCTGGCTGTC-TACTGACACTCATTGTGCTGTCTGCTCCTGAAACCCTTTATGCTCCCTCCA-TTTCTTCTCAATTTCCGGTG--CA--TCATTTGATTCCACGTTTTCCTCTG-------- i mm10.chr13 C 0 C 0 s canFam3.chr3 14336566 148 + 91889043 CCCAGTGCTCTAGTAACTGAACATTTGGATCCAAACCTGTACTCTGT---ATAGTGTCTGCCTGTCATATTGGTACTTACTATATTGTCTGCTCCTGAACCCCTTTTT-------CCT-TTTCTTTTCTGATTGT-ATG--TGCATCCTTTAA--------TTCTCTCTT-------- i canFam3.chr3 C 0 I 8 s dasNov3.JH570378 1266220 162 - 11655695 CCCGGTGCTCCATCAACTAGTCTTCTGGAGCTAAACCCACATATTTT---ATTGTGTCTAGCCCT-AAATTGGTACTCAATGTTCTGTTTGCAACTGACACCCTGCCTGCTCCCTCCT-TTACTGCTCTGATTTT-ATGTTTG--TTCTTTAA--------CTCACTCTTTCCTTCTG i dasNov3.JH570378 C 0 C 0 a score=1394789.000000 s hg38.chr5_GL383530v1_alt 75579 105 + 101241 GAAAAATACGGGCTGCCAAT--GGCAATTCTTTCTGTGATCATGCTGCCTAGAGAGCTCCATTTCCTG----------------TGCTA-------------CCCACCATTGCTG--------AACA--------------TC-------------------TCC-------------TTGTCT---GTCACA s panTro5.chr5 20309487 105 + 181907262 GAAAAATACGGGCTGCCAAT--GGCAATTCTTTCTGTGATCATGCTGCCTAGGGAGCTCCATTTCCTG----------------TGCTA-------------CCCACCATTGCTG--------AACA--------------TC-------------------TCC-------------TTGTCT---GTCACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20321811 105 + 183735486 GAAAAATACGGGCTGCCAAT--GGCAATTCTTTCTGTGATCATGCTGCCTAGGGAGCTCCATTTCCTG----------------TGCTA-------------CCCACCATTGCTG--------AACA--------------TC-------------------TCC-------------TTGTCT---GTCACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4808464 105 - 13748885 GAAAAATACAGGCTGCCAAT--GGCAATTCTTTCTGTGATCATGCTGCCTAGGGAGCTCCATTTCCTG----------------TGCTA-------------CCCAACATCGCTG--------AACA--------------TC-------------------TCC-------------TTGTCT---GTCACA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53841023 105 - 163208435 GAAAAATACAGGCCGCCGAT--GGCAATTCTTTCTGTGATCATGCTGCCTAGGGAGCTCCATTTCCTG----------------TGCCA-------------CCCACCATTGATG--------AACA--------------TC-------------------TCC-------------TTGTCT---GTCACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87863841 105 - 180051392 GAAAAATACAGACCACCGAT--GGCAGTTCTTTCTGTGATCATGCTGCCTAGGGAGCTGCATTTCCTG----------------TGCTA-------------CCCACCATTGCTG--------AACA--------------TC-------------------TGC-------------TTGTCT---GTCACA i rheMac8.chr6 I 3 C 0 s macFas5.chr6 87968265 105 - 181584905 GAAAAATACAGACCACCGAT--GGCAGTTCTTTCTGTGATCATGCTGCCTAGGGAGCTGCATTTCCTG----------------TGCTA-------------CCCACCATTGCTG--------AACA--------------TC-------------------TGC-------------TTGTCT---GTCACA i macFas5.chr6 I 3 C 0 s macNem1.NW_012011400v1 1195739 105 - 8785636 GAAAAATACAGACAACCGAT--GGCAGTTCTTTCTGTGATCATGCTGCCTAGGGAGCTGCATTTCCTG----------------TGCTA-------------CCCACCATTGCTG--------AACA--------------TC-------------------TGC-------------TTGTCT---GTCACA i macNem1.NW_012011400v1 I 3 C 0 s cerAty1.NW_012002401v1 1659426 105 + 27333823 GAAAAATACAGGCCACCGAT--GGCAGTTCTTTCTGTGATCATGCTGCCTAGGGAGCTGCATTTCCTG----------------TGCTA-------------CCCACCATTGCTG--------AACA--------------TC-------------------TGC-------------TTGTCT---GTCACA i cerAty1.NW_012002401v1 I 3 C 0 s chlSab2.chr4 1929040 105 - 91010382 GAAAAATACAGGCCACCGAT--GGCAGTTCTTTCTGTGATCATGCTGCCTAGGGAGCTCCATTTCCTG----------------TGCTA-------------CCCACCATTGCTG--------AACA--------------TC-------------------TGC-------------TTGTCT---GTCACA i chlSab2.chr4 I 3 C 0 s manLeu1.NW_012103732v1 2048456 113 + 5179401 GAAAAATACAGGCCACCGAT--GGCAGTTCTTTCTGTGATCATGCTGCCTAGGGAGCTCCATTTCCTG----------------TGCTA-------------CCCACCATTGCTGTGCTACCCACCA--------------TC-------------------TGC-------------TTGTCT---GTCACA i manLeu1.NW_012103732v1 I 3 C 0 s colAng1.NW_012115488v1 7751269 105 - 21726897 GAAAAATACAGGCCACCAAT--GGCAGTTCTTTCTGTGATCATGCTGCTTAGGGAGCTCCATTTCCTG----------------TGCTA-------------CCCACCATTGCTG--------AGCA--------------TC-------------------TCC-------------TTGTCT---GTCACA i colAng1.NW_012115488v1 I 3 C 0 s calJac3.chr2 112560828 104 + 204313951 GAAAAATACAGGTCACCAAT--GGCAGTTCTTTCTGTGATCATGCTGCCTAGGGAGCTCC-TTTCCTG----------------TGCTG-------------CCCACCGTTTCTG--------AACA--------------TC-------------------TTC-------------CTGTCT---GTCACA i calJac3.chr2 I 8 C 0 s saiBol1.JH378106 45014257 105 + 71252344 GAAAAATACAGGTCACCAAT--GGCAGTTCTTTCTGTGACCATGCTGCCTAGGGAGCTCCATTTCCTG----------------TGCTG-------------CCCACCATTTCTG--------CACA--------------TC-------------------TTC-------------TTGTCT---GTCACA i saiBol1.JH378106 I 8 C 0 s cebCap1.NW_016107830v1 373364 103 - 1393929 GAAAAATACAGGTCACCAAT--GGCAGTTCTTTCTGTGATCATGCTGCCTAGGGAGCTCC--TTACTG----------------TGCTG-------------CCCACCATTTCTG--------TACA--------------TC-------------------TTC-------------TTGTCT---GTCACA i cebCap1.NW_016107830v1 I 8 C 0 s aotNan1.NW_018506370v1 1445805 105 - 15889662 GAAAAATACAGGTCACCAAT--GGCAGTTCTTTCTGTGATCATGCTGCCTAGGGAGCTCCATTTCCTG----------------TGCTG-------------CCCACCATTTCTG--------AACA--------------TC-------------------TTC-------------TTGTCT---GTCACA i aotNan1.NW_018506370v1 I 8 C 0 s proCoq1.NW_012147189v1 633214 105 - 10520994 GAAAAATACAGGTCACTAAG--AGAAACCCTTTCCAGGAGCCCGCTGCCTGGGGAGCTCCATTTGCTA----------------TGCTT-------------CCCACCATCGCTG--------AACA--------------AA-------------------TCC-------------TTGTCT---GTCACA i proCoq1.NW_012147189v1 I 7 I 115 s otoGar3.GL873536 1327631 99 - 29863360 GAAAAATGCA-GTCACTAAC--AGAAGCCCTTTCCCCAGGCCCGCTGCCTGGGGAGCCC----TTCTG----------------TGCTA-------------CTCACCATGGCCG--------AGCA--------------AG--------------------CC-------------TTGTCT---GTCGCA i otoGar3.GL873536 I 8 I 7 s mm10.chr13 76483103 115 + 120421639 GAGAAATACAGGCCACCAAC--TGC-------TCTGTGACCAGG--GTCTGGAAAGCTCCATCATCCA----------------TACAT-------------TGCATCTTTGCCT--------TTTA--------------TCAAAATAGTGTTGCCCTCACTTC-------------CTGTCT---ATCTTG i mm10.chr13 C 0 I 2 s canFam3.chr3 14336722 123 + 91889043 GAAAAATACAGTTTACTAGTAGGGAGGCTCTTTCTATGATCATGCTGACCTGGGAGCTCCATTTCCTT----------------TGCTC-------------CCCACCATTGCTG--------AACA--------------TC-------------------TACTTTTTATTTTCTTTTGTCTTCAGTCACA i canFam3.chr3 I 8 I 3 s dasNov3.JH570378 1266382 148 - 11655695 GAAAAATGCAGGTCACCAAT--AGAAACCCTCTCTGTAATCATGCTACCTAGGGATCTCTGTTTTCTAGGGTTCAAAAACACACTGCTATTTCCCATACCACCCCACTATTGTTG--------AATGCCTGCTTCTCCTTTTC-------------------TCC-------------TCTTCT---GTCACA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84843485 132 + 108143057 I a score=81839.000000 s hg38.chr5_GL383530v1_alt 75684 10 + 101241 ---GTACCCCTGG- s panTro5.chr5 20309592 10 + 181907262 ---GTACCCCTGG- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20321916 10 + 183735486 ---GTACCCCTGG- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4808569 10 - 13748885 ---GTACCCCTGG- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53841128 10 - 163208435 ---GTACCCCTGG- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87863946 10 - 180051392 ---GTACCCGTGG- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87968370 10 - 181584905 ---GTACCCGTGG- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1195844 10 - 8785636 ---GTACCCGTGG- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1659531 10 + 27333823 ---GTACCTCTTG- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1929145 10 - 91010382 ---GTACCCGTGG- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2048569 10 + 5179401 ---GTACCCGTGG- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7751374 10 - 21726897 ---GTACCCGTGG- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112560932 10 + 204313951 ---GTACCCCTGG- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45014362 10 + 71252344 ---GTACCCCTGG- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 373467 10 - 1393929 ---ATACCCCAGG- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1445910 10 - 15889662 ---GTGCCCCTGG- i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1327737 10 - 29863360 ---GCTCCCCTCT- i otoGar3.GL873536 I 7 I 1 s mm10.chr13 76483220 10 + 120421639 ---GCCTCCTTGC- i mm10.chr13 I 2 I 6 s canFam3.chr3 14336848 10 + 91889043 ---GTTTCTCTTT- i canFam3.chr3 I 3 I 3 s dasNov3.JH570378 1266530 14 - 11655695 TTATTTTCTCTTTC i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84843485 132 + 108143057 I e proCoq1.NW_012147189v1 633319 115 - 10520994 I a score=603469.000000 s hg38.chr5_GL383530v1_alt 75694 54 + 101241 TCTC----CTCAGAAACAG-------------------ACATGAAACA--CCGTCTCACTC-T---------------------------------------TTTTGAACAGTGAACTT s panTro5.chr5 20309602 54 + 181907262 TCTC----CTCAGAAACAG-------------------ACATGAAACA--CCGTCTCACTC-T---------------------------------------TTTTGAACAGTGAACTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20321926 54 + 183735486 TCTC----CTCAGAAACAG-------------------ACATGAAACA--CCGTCTCACTC-T---------------------------------------TTTTGAACAGTGAACTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4808579 54 - 13748885 TCTC----CTCAGAAACAG-------------------ACATGAAACA--CCATCTCACTC-T---------------------------------------TTTTGAACAGTGAACTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53841138 54 - 163208435 TCTC----CTCAGAAACAG-------------------ACATGAAACA--CCGTCTCACTC-T---------------------------------------TTTTGAACAGTGAACTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87863956 54 - 180051392 TCTC----CTCAGAAACAG-------------------ACATGAAACA--CCATCTCACTC-T---------------------------------------TTTTGAACAGTGAGCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87968380 54 - 181584905 TCTC----CTCAGAAACAG-------------------ACATGAAACA--CCATCTCACTC-T---------------------------------------TTTTGAACAGTGAGCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1195854 54 - 8785636 TCTC----CTCAGAAACAG-------------------ACATGAAACA--CCATCTCACTC-T---------------------------------------TTTTGAACAGTGAGCTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1659541 54 + 27333823 TCTC----CTCAGAAACAG-------------------ACATGAAACA--CCATCTCACTC-T---------------------------------------TTTTGAACAGTGAGCTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1929155 54 - 91010382 TCTC----CTCAGAAACAG-------------------ACATGAAACA--CCATCTCACTC-T---------------------------------------TTTTGAACAGTGAGCTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2048579 53 + 5179401 TCTC----CTCAGAAACAG-------------------ACATGAAACA--CTATCTCACTC-----------------------------------------TTTTGAACAGTGAGCTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7751384 54 - 21726897 TCTC----CTCAGAAACAG-------------------ACAGGAAACA--CTATCTCACTC-T---------------------------------------TTTTGAACAGTGAGCTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112560942 43 + 204313951 T-------CTCAGAAACAG-------------------ACATGAAGCA--CCAGCTCATTC-C---------------------------------------TT--------TGAACTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45014372 51 + 71252344 T-------CTCAGAAACAG-------------------ACATGAAGCA--CCATCTCACTC-C---------------------------------------TTTTGAACAGTGAACTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 373477 51 - 1393929 T-------CTCAGAAACAG-------------------ACGTGAAGCA--CCGTGTCACTC-C---------------------------------------TTTTGAACAGTGAACTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1445920 51 - 15889662 T-------CTCAGAAACAG-------------------ACATGAAGCA--CCATCTCACTC-C---------------------------------------TTTTGAACTGTGAACTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84843617 58 + 108143057 TCTCCTCTCTTAGAAATAG-------------------ATGGGAAGCA--CTGTCTCGCTG-T---------------------------------------TTTTGAAGAATGAATTT i micMur3.chr12 I 132 C 0 s otoGar3.GL873536 1327748 53 - 29863360 TCTCTTCTCTTA-----AG-------------------GCGGGAAACA--CTATCTCACTC-T---------------------------------------TTATGAGGAGTGAATTT i otoGar3.GL873536 I 1 C 0 s mm10.chr13 76483236 54 + 120421639 TCCT----TTTAGAAATAG-------------------ATGTGAAGTA--TTGCTTCATTC-C---------------------------------------TTTGTAAGAAGaatttt i mm10.chr13 I 6 I 787 s canFam3.chr3 14336861 59 + 91889043 TCTCTTCTATTAGAAATAG-------------------ATATGAAATA--TTATTTCTTTCTT---------------------------------------TTTTTAAGAGGGAATTT i canFam3.chr3 I 3 C 0 s dasNov3.JH570378 1266544 117 - 11655695 TCTCTtt-tttaaaaacagctttattgagatatactcaatatcatacaatccatccAAATC-TTTCTTTTTATTTATTCTCTTAGAAATAAATGAAACATAGTTTTGAAGATTGAATAT i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 633319 115 - 10520994 I a score=75768.000000 s hg38.chr5_GL383530v1_alt 75748 5 + 101241 TTACT s panTro5.chr5 20309656 5 + 181907262 TTACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20321980 5 + 183735486 TTACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4808633 5 - 13748885 TTACT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53841192 5 - 163208435 TTACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87864010 5 - 180051392 TTACT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87968434 5 - 181584905 TTGCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1195908 5 - 8785636 TTACT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1659595 5 + 27333823 TTACT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1929209 5 - 91010382 TTACT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2048632 5 + 5179401 TTACT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7751438 5 - 21726897 TTACT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112560985 5 + 204313951 TTACT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45014423 5 + 71252344 TTACT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 373528 5 - 1393929 TTACT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1445971 5 - 15889662 TTACT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84843675 5 + 108143057 TTGTT i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1327801 5 - 29863360 GTATT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76484077 5 + 120421639 TTATT i mm10.chr13 I 787 C 0 s canFam3.chr3 14336920 5 + 91889043 TTATT i canFam3.chr3 C 0 I 167 s dasNov3.JH570378 1266661 5 - 11655695 ATACT i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 633319 115 - 10520994 I a score=475281.000000 s hg38.chr5_GL383530v1_alt 75753 32 + 101241 TTCCCATTCCCTCTGACCTTCTCTGGGTGGTA- s panTro5.chr5 20309661 32 + 181907262 TTCCCATTCCCTCTGACCTTCTCTGGGTGGTA- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20321985 32 + 183735486 TTCCCATTCCCTCTGACCTTCTCTGGGTGGTA- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4808638 32 - 13748885 TTCCCATCCCCTCTGAGCTTCTCTGGGTGGTA- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53841197 32 - 163208435 TTCCCATCCCTTCTGAGCTTCTCTGGGTGGTA- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87864015 32 - 180051392 TTCCCATCCCCTCTGAGCTTCTCTGGGTGGTA- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87968439 32 - 181584905 TTCCCATCCCCTCTGAGCTTCTCTGGGTGGTA- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1195913 32 - 8785636 TTCCCATCCCCTCTGAGCTTCTCTGGGTGGTA- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1659600 32 + 27333823 TTCCCATCCCCTCTGAGCTTCTCTGGGTGGTA- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1929214 32 - 91010382 TTCCCATCCCCTCTGAGCTTCTCTGGGTGGTA- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2048637 32 + 5179401 TTCCCATCCCCTCTGAGCTTCTCTGGGTGGTA- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7751443 32 - 21726897 TTCCCATCCCCTCTGAGCTTCTCTGGGTGGTA- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112560990 32 + 204313951 TTCCCATCCTCTCTGAGCTTCTCTGGGTGGCA- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45014428 32 + 71252344 TTCCCATCCTCTCTGAGATTCTCTGGGTGGCA- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 373533 32 - 1393929 ATCCCATACTCTCTGAGCTTCTCTGGGTGGCA- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1445976 32 - 15889662 TTCCCATCCTCTCTGAGCTTCTCTGGATGGCA- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84843680 32 + 108143057 TTAATATCCCCTCTGAGCTTCTGTGGGTGGCA- i micMur3.chr12 C 0 I 1 s otoGar3.GL873536 1327806 32 - 29863360 TTAACTTTTCCTCTGAGCTTCTGAGGGTGGCA- i otoGar3.GL873536 C 0 I 1 s mm10.chr13 76484082 32 + 120421639 CTCACAACCCCTCTGAGCCTCTGGGTATGGTA- i mm10.chr13 C 0 C 0 s canFam3.chr3 14337092 32 + 91889043 TCCGAATCTCCCCTGAGCTTCCATGGGTGGTG- i canFam3.chr3 I 167 C 0 s dasNov3.JH570378 1266666 33 - 11655695 TCCTCATTCCCTCTGAACTTCTCTGAATGGTGG i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 633319 115 - 10520994 I a score=8395840.000000 s hg38.chr5_GL383530v1_alt 75785 563 + 101241 TGAAATAGAAAGCAGATATGGCGTATCAAAATTGTCTCCTTCAGTCAAGTTGCCACGGGGGAAAAACC--------CAAGATTCTGTGAGGCTACTGTGTCT-CAGATCTTTCCTGGAAACATCATAAGCAAGAGCCCGTTCTCCATCATCCATCATTCTGAAT-CCCTGGAGCATATTCTAGGATGTGCGGTGTATGAGGACTCTCCTGGTGCCACCTTCTGCA------------------T-TTGGTTTCCTGCCATCTCCT--GTCTCAGGATTCAAGGCCTCATAGGCCTGGCTAGACTCCACACAGTATTC---CTCCTGGTGGTGCCAAATTAACCAACCTGCCTTTGTATTTGGAACCTTCTCTGAAAGC-TTTCCAGCAGTT----TCTTATTGCCAAGGTCTCTGCTCCCAATTTTAAAGCCTTGAAGTCTCGCCT---TTTCTCTGTCATCCCTCTAGCCTTGTTTGATCAATGACCAC--CCTGGCGTCCAGGGCTC-TGTTTTATTCTGTGGGTGCTATTCTGTGTGTTTGG----AAGGTTCCATTGTATGTCATCCACTTACTAC-CTGGTCCTCAGCCCACATTTGAAGCCAGCTAT s panTro5.chr5 20309693 544 + 181907262 TGAAATAGAAAGCAGATATGGCGTATCAAAATTGTCTCCTTCAGTCAAGTTGCCACGGGGGAAAAACC--------CAAGATTCTGTGAGGCTACTGTGTCT-CAGATCTTTCCTGGAAACATCATAAGCAAGAGCCCATTCTCCATCATCCATCATTCTGAAT-CCCTGGAGGATATTCTAGGATGTGCTGTGTATGAGGACTCTCCTGGTGCCACCTTCTGCA------------------T-TTGGTTTCCTGCCATCTCCT--GTCTCAGGATTCAAGGCCTCATAGGCCTGGCTAGACTCCACACAGTATTC---CTCCTGGTGGTGCCAAATTAACCAACCTGCCTTTGTATTTGGAACCTTCTCTGAAAGC-TTTCCAGCAGTT----TCTTATTGCCAAGGTCTCTGCTCCCAATTTTAAAGCCTTGAAGTCTCGCCT---TTTCTCTGTCATCCCTCTAGCCTTGTTTGATCAATGACCAC--CCTGGCGTCCAGGGCTC-TGTTTTATTCTGTGGGTGCTATTCTGTGTGTTTGG----AAGGTTCCATTGTATGTCATCC--------------------CCCCACATTTGAAGCCAGCTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20322017 544 + 183735486 TGAAATAGAAAGCAGATATGGCGTATCAAAATTGTCTCCTTCAGTCAAGTTGCCACGGGGGAAAAACC--------CAAGATTCTGTGAGGCTACTGTGTCT-CAGATCTTTCCTGGAAACATCATAAGCAAGAGCCCATTCTCCATCATCCATCATTCTGAAT-CCCTGGAGCATATTCTAGGATGTGCTGTGTATGAGGACTCTCCTGGTGCCACCTTCTGCA------------------T-TTGGTTTCCTGCCATCTCCT--GTCTCAGGATTCAAGGCCTCATAGGCCTGGCTAGACTCCACACAGTATTC---CTCCTGGTGGTGCCAAATTAACCAACCTGCCTTTGTATTTGGAACCTTCTCTGAAAGC-TTTCCAGCAGTT----TCTTATTGCCAAGGTCTCTGCTCCCAATTTTAAAGCCTTGAAGTCTCGCCT---TTTCTCTGTCATCCCTCTAGCCTTGTTTGATCAATGACCAC--CCTGGCGTCCAGGGCTC-TGTTTTATTCTGTGGGTGCTATTCTGTGTGTTTGG----AAGGTTCCATTGTATGTCATCC--------------------CCCCACATTTGAAGCCAGCTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4808670 563 - 13748885 TGAAATAGAAAGCAGATATGGCGTATCAAAATTGTCTCCTTCAGTCAAGTTGCCACGGGGGAAAAACC--------CAAGATTCTGTGAGGCTACTGTGTCT-CAGATCTTTCCTGGAAACATCATAAGCAAGAGCCCGTTCTCCATCATCCATCATTCTGAAT-CCCTGGAGCATATTCTAGGATGTGCTGTGTATGAGGACTCTCCTGGTGCCACCTTCTGCA------------------T-TTGGTTTCCTGCTATCTCCT--GTCTCAGGATTCAAGGCCTCATAGGCCTGGCTAGACTCCACACAGTATTC---CTCCTGGTGGTGCCAAATTAACCAACCTGCCTTTCTATTTGGAACCTTCTCTGAAAGC-TTTCCAGCAGTT----TCTTATTGCCAAGGTCTCTGCTCCCAATTTTAAAGCCTTGAAGTCTCGCCT---TTTCTCTGTCATCCCTCTAGCCTTGTTTGATCAATGACCAC--CCCGGCGTCCAGGGCTC-TGTTTTATTCTGTGGGTGCTATTCTGTGTGTTTGG----AAGGTTCCACTGTATGTCATCCACTTACTAC-CTGGTCCTCAGCCCACATTTGAAGCCGGCTAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53841229 563 - 163208435 TGAAATAGAAAGCAGATATGGCATATCAAAATTGTCTCCTTTAGTCAAGTTGCCACGGGGGAAAAAGC--------CAAGATTCTGTGAGGCTACTGTGTCT-CAGATCTTTCCTGCAAACATCATAAGCAAGAGCCCGTTCTCCATCATCCATCATTCTGAAT-CCCTGGAGCATATTCTAGGATGTGCTGTGTATGGGAACTCTCCTGGTGCCACCTTCTGCG------------------T-GTGGTTTCCTGCCATCTCCT--GTCTCAGGATTCAAGGCCTCATAGGCCTGGCTAGACTCCACACCGTATTC---CTCCTGATGGTGCCGAATTAACCAACCTGCCTTTATATTTCGAACCTTCTCTGAAAGC-TTTCCAGCAGTT----TCTTATTGCCAAGGTCTCTGCTCCCAATTTTAAAGCCTTGAAGGCCCGCCT---TTTCTCTGTCATCCCTCTAGCCTTGTTTCATCAATGACCAC--CCCGGCGTCCAGGGCTC-TGTTTTATTCTGTGGGTGCTATTCTGTGTGTTTGG----AAGGTTCCACTGTATGTCATACACTTACTAC-CTGGTCCTCAGCCCACATTTGAAGCCGGTTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87864047 562 - 180051392 TAAAATAGAAAGCAGATATGGCATATCAAAATTGTCTCCTTCAGTCAAGTTGCCACGGGGG-AAAACT--------CAAGATTCTGTGAGGCCACTCTGTCC-CAGATCTTTCCTGGAAACATCATAAGCAAGAGTGCATTCTCCATCATCCATCATTCTGAAT-CCCTGGAGCATATTCTAGGATGTGCTGTGTATGAGGATTCTCCTGGTGCCACCTTCTGCA------------------T-TTGGTTTCCTGCAATCTCCT--GTCTCAGGATTCAAGGCCTCATAGACCTGCCTAGACTCCACACCATATTC---CTCCTGGTGGTGCCAAATTAACCAACCTGCCTTTCTATTTCAAACCTTCTCTGAAAGC-TTTCCAGCAGTT----TCTTATTGCCAAGGTCTCTGCTCCCAATTTTAAAGCCTTGAAGGCTCGCCT---TTTCTCTGTCATCCCTCTAGCCTTGTGTGATCAATGACCAC--GCCGGCGTCCAGGGCTC-TGTTTTATTCTGTGGGTGCTATTCTGTGTGTTTGG----AAGGTTCCACTGTATGCCATCCACTTCCTAC-CTGGTCCTCAGCCCACATTTGAAGCTGGCTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87968471 562 - 181584905 TAAAATAGAAAGCAGATATGGCATATCAAAATTGTCTCCTTCAGTCAAGTTGCCACGGGGG-AAAACT--------CAAGATTCTGTGAGGCCACTCTGTCC-CAGATCTTTCCTGGAAACATCATAAGCAAGAGCGCATTCTCCATCATCCATCATTCTGAAT-CCCTGGAGCATATTCTAGGATGTGCTGTGTATGAGGACTCTCCTGGTGCCACCTTCTGCA------------------T-TTCGTTTCCTGCAATCTCCT--GTCTCAGGATTCAAGGCCTCATAGACCTGGCTAGACTCCACACCATATTC---CTCCTGGTGGTGCCAAATTAACCAACCTGCCTTTCTATTTCAAACCTTCTCTGAAAGC-TTTCCAGCAGTT----TCTTATTGCCAAGGTCTCTGCTCCCAATTTTAAAGCCTTGAAGGCTCGCCT---TTTCTCTGTCATCCCTCTAGCCTTGTGTGATCAATGACCAC--GCCGGCGTCCAGGGCTC-TGTTTTATTCTGTGGGTGCTATTCTGTGTGTTTGG----AAGGTTCCACTGCATGCCATCCACTTCCTAC-CTGGTCCTCAGCCCACATTTGAAGCTGGCTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1195945 562 - 8785636 TAAAATAGAAAGCAGATATGGCATATCAAAATTGTCTCCTTCAGTCAAGTTGCCACGGGGG-AAAACT--------CAAGATTCTGTGAGGCCACTCTGTCC-CAGATCTTTCCTGGAAACATCATAAGCAAGAGCGCATTCTCCATCATCCATCATTCTGAAC-CCCTGGAGCATATTCTAGGATGTGCTGTGTATGAGGTCTCTCCTGGTGCCACCTTCTGCA------------------T-TTGGTTTCCTGCAATCTCCT--GTCTCAGGATTCAAGGCCTCATAGACCTGGCTAGACTCCACACCATATTC---CTCCTGGTGGTGCCAAATTAACCAACCTGCCTTTCTATTTCAAACCTTCTCTGAAAGC-TTTCCAGCAGTT----TCTTATTGCCAAGGTCTCTGCTCCCAATTTTAAAGCCTTGAAGGCTCGCCT---TTTCTCTGTCATCCCTCTAGCCTTGTGTGATCAATGACCAC--GCCGGCGTCCAGGGCTC-TGTTTTATTCTGTGGGTGCTATTCTGTGTGTTTGG----AAGGTTCCACTGTATGCCATCCACTTCCTAC-CTGGTCCTCAGCCCACATTTGAAGCTGGCTAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1659632 562 + 27333823 TAAAATAGAAAGCAGATATGGCATATCAAAATTGTCTCCTTCAGTCAAGTTGCCACGGGGG-AAAACT--------CAAGATTCTGTGAGGCCACTCTGTCC-CAGATCTTTCCTGGAAACATCATAAGCAAGAGCGCATTCTCCATCATCCATCATTCTGAAT-CCCTGGAGCATATTCTAGGATGTGCTGTGTATGAGGACTCTGCTGGTGCCACCTTCTGCA------------------T-TTGGTTTCCTGCAATCTCCT--GTCTCAGGATTCAAGGCCTCATAGACCTGGCTAGACTCCACACCATATTC---CTCCTGGTGGTGCCAAATTAACCAACCTGCCTTTCTGTTTCAAACCTTCTCTGAAAAC-TTTCCAGCAGTT----TCTTATTGCCAAGGTCTCTGCTCCCAATTTCAAAGCCTTGAAGGCTCACCT---TTTCTCTGTCATCCCTCTAGCCTTGTGTGATCAATGACCAC--GCCGGCGTCCAGGGCTC-TGTTTTATTCTGTGGGTGCTATTCTGTGTGTTTGG----AAGGTTCCACTGTATGTCATCCACTTCCTAC-CTGGTCCTCAGCCCACATTTGAAGCCGGCTAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1929246 580 - 91010382 CAAAATAGAAAGCAGATATGGCATATCAAAATTGTCTCCTTCAGTCAAGTTGCCACGGGGG-AAAACT--------CAAGATTCTGTGAGGCCACTCTGTCC-CAGATCTTTCCTGGAAACATCATAAGCAAGAGCGCATTCTCCATCATCCATCATTCTGAAT-CCCTGGAGCATATTCTAGGAGGTGCTGTGTATGAGGACTCTCCTGGTGCCGCCTTCTGCACCTTCTCCTGGTGCCACCT-TTGGTTTCCTGCAATCTCCT--GTCTCAGGATTCAAGGCCTCATAGACCTGGCTAGACTCCACACCATATTC---CTCCTGGTGGTGCCAAATTAACCAACCTGCCTTTCTATTTCAAACCTTCTCTGAAAGC-TTTCCAGCAGTT----TCTTATTGCCAAGGTCTCTGCTCCCAATTTTAAAGCCTTGAAGGCTCGCCT---TTTCTCTGTCATCCCTCTAGCCTTGTGTGATCAATGACCAC--GCTGGCGTCCAGGGCTC-TGTTTTATTCTGTGGGTGCTATTCTGTGTGTTTGG----AAGGTTCCACTGTATGTCATCCACTTCCTAC-CTGGTCCTCAGCCCACATTTGAAGCCGGCTAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2048669 562 + 5179401 TAAAATAGAAAGCAGATATGGCATATCAAAATTGTCTCCTTCAGTCAAGTTGCCACGGGGG-AAAACT--------CAAGATTCTGTGAGACCACTCTGTCC-CAGATCTTTCCTGGAAATATCATAAGCAAGAGCGCATTCTCCATCATCCATCATTCTGAAT-CCCTGGAGCATATTCTAGGATGTGCTGTGTATGAGGACTCTCCTGGTGCCACCTTCTGCA------------------T-TTGGTTTCCTGCAATCTCCT--GTCTCAGGATTCTAGGCCTCATAGACCTGGCTAGACTCCACACCATGTTC---CTCCTGGTGGTGCCAAATTAACCAACCTGCCTTTCTGTTTCAAACCTTCTCTGAAAGC-TTTCCAGCAGTT----TCTTATTGCCAAGGTCTCTGCTCCCAATTTTAAAGCCTTGAAGGCTCGCCT---TTTCTCTGTCATCCCTCTAGCCTTGTGTGATCAATGACCAC--GCTGGCATCCAGGGCTC-TGTTTTATTCTGTGGGTGCTATTCTGTGTGTTTGG----AAGGTTCCACTGTATGTCATCCACTTCCTAC-CTGGTCCTCAGCCCACATTTGAAGCTGGTTAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7751475 563 - 21726897 TAAAATAGAAAGCAGATATGGCATATCAAAATTGTCTCCTTCAGTCAAGTTGCCATGGGGGAAAAACT--------CAAGATTCTGTGAGGCCACTTTGTCC-CAGGTCTTTCCTGGAAACATCATAAGCAAGAGCCCATTCTCCATCATCCATCATTCTGAAT-CTCTGGAGCATATTCTAGGATGTGCTGTGTATGAGGACTCTCCTGGTGCCACCTTCTGCA------------------T-TTGGTTTCCTGCAATCTCCT--GTCTCAGGATTCAAGGCCTCATAGACCTGGCTAGACTCCACACCATATTC---CTCCTGGTGGTGCCAGATTAACCAACCTGCCTTTCTATTTCAAACCTTCTCTGAAAGC-TTTCCAGCAGTT----TCTTATTGCCAAGGTCTCTGCTCCCAATTTTAAAGCCTTGAAGGCTCGCCT---TTTCTCTGTCATCCCTCTAACCTTGTGTGATCAATGACCAC--ACTGGTGTCCAGGGCTC-TGCTTTATTCTGTGGGTGCTGTTCTGTGTGTTTGG----AAGGTTCCATTGTATGTCATCCACTTCCTAC-CTGGTCCTCAGCCCACATTTGAAGCCAGCTAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112561022 564 + 204313951 TAAAATAGAAAGCAGATAGGACATATCAAAATTGTCTCCTTTAGTCAGGTTGCCACTGGGGAAAAACT--------CAAGATGCTTTGAGGCTACTGTGTCC-CAAATCTTTCCTGGAAATATCATAAGAAAGAGCCCGTTCTCCATCATTCATCATTCTGAAT-CCCTGGAGCATATTCTAGGATGTGCTGTGAATGAGGACTCTCCTGGTGCCACCTTCTGCA------------------T-TTGGTTTCCTGCCATCTCCT--ATCTCAGGATTCAAGGCCTCATAGGCCTGGCTAGACTCCACACCATATTC---CTCCTGGTGGTGCCAAATTAACCAACCTGACTTTCTATTTCAAACCTTCTCTGAAAGC-TTTCCAGTAGTT----TCTTATTGCCAAGGTCTCTGCTCCCAATTTTAAAGCCTTGAAGGCTCGTCT---TTTCTTTGTCATCTTTCTAGGCTTGTTTGATCAATGACTAC--CCTGGCATCCAGGGCTCTTGTTTTATTCTGCGGGCGCTATTCTATGTGGCTGG----AAGGTTCCACTGTGTGTTGCCCACTTCCTAC-CTGGTCCTCAGCCCACAGTCGAAGCCGGCTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45014460 564 + 71252344 TAAAATAGAAAGCAGATAGGGCATATTAAAATTGTCTCCTTTAGTCAAGTTGCCACTGGGGAAAAACT--------CAAGATGCTGTGAGGCTACTGTGTCC-CAAATCTTTCCTGGAAAATTCATAAGCAAGAGCCTGTTCTCCATCATCCATCATTCTGAAT-CCCTGGAGCATATTCTAGGATGTGCTGTGAATGAGGACTCTCCTGGTGCCACCTTCTGCA------------------T-TTGGTTTCCTGCCATCTCCG--ATCTCAGGATTCAAGGCCTCATAGGCCTGGCTAGACTCCACACAGTATTC---CTCCTGGTGGTGCCAAGTTAACCAACCTGACTTTCTATTTCAAAACTTCTCTGAAAGC-TTTCCAGCAGTT----TCTTATTGCCAAGGTCTCTGCTCCCAATTTTAAAGCCTGCAAGGCTCGTCT---TGTCTTTGTCATCTTTCTAGGCTTGTTTGATCAATGACTAC--CCCGCCGTCCAGGGCTCTTGTTTTATTCTGTGGGTGCCTTTCTGTGTGTCTGG----AAGGTTCCACCATATGTTGTCCACTTCCTAC-CTGGTCCTCAGCCCACTTTCGAAGCCGGCTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 373565 563 - 1393929 TAAAATAGAAAGCAGATAGGGCCTATCAAAATTGTCTCCTTTAGTCAAGTTGCCACT-GGGAAAAACT--------CAAGATGCTGTAAGACTACTGTGTCC-CAAATCTTTCCTGGAAAATTCATAAGCAAGAGCCTGTTCTCCATCATCCATCATTCTAAAT-CCCTGGAGCATATTCTAGGATGTGCTGTGAACGAGGACTCTCCTGGTGCCACCTTCTGCA------------------T-TTGGTTTCCTGCCATCTCTT--ATCTCAGGATTCAAGGGCTCATAGGCCTGGCTAGACTCCACGCCGTATTC---CTCCTGGTGGTGCCAAATTAACCAACCTGATTTTCTATTTCAAACCTTCTCTGAAAGC-TTTCCGGCAGTT----TCTTATTGCCAAGGTCTCTGCTCCAAATTTTAAAGCCTTGAAGGCTCGTCT---TTTCTTTGTCATCTTTCTAGGCTTGTGTGATCAATGACTAC--CCTGGCATCCAGGGCTCTTGTTTTATTCTGTGGGTGCTATTCTGTGTGTCTGG----AAGATTCCACTGTATGTCGTCCACTTCCTAC-CTGGTCCTCCGCCCACATTTGAAGCCGGCTAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1446008 564 - 15889662 TAAAATAGAAAGCAGATAGGGCGTATCAAAATTGTCTCCTTTAGTCAAGTTGCCACTGGGGAAAAACT--------CAAGATGCTGTGAGGCTACTGTGTCC-CAAATCTTTCCTGGAAACATCATAAGCAAGAGCCTGTTCTCCATCATCCATCATTCTGAAT-CCCTGGAGCATATTCTAGGATGTGCTGTGAATGAGGACTCTCCTGGTGCCACCTTCTGCA------------------T-TTGGTTTCCTGCCATCTCCT--ATCTCAGGATTCAAGGCCCCATAGGCCTGGCTAGACTCCACACAGTATTC---CTCCTGTTGGTGCCAAATTAACCAACCTGACTTCCTATTTCAAACCTTCTCTGGAAGC-TTTCCAGCAGTT----TCTTATTGCCAAGGTCTCTGCTTCCAATTTTAAAGCCTTGAAGGCTCGTCT---TTTCTTTGTCATCTTTCTAGGCTTGTTTGATCAATGACTAC--CCCGGCGTCCAGGGCTCTTGTTTTATTTTGTGGGTGCTATTCTGTGTGTCTGG----AAGGTTCCACTGTATGTCGTCCACTTCCTAC-CTGGTCCTCAGCCCACATTCGAAGCCGGCTAT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84843713 566 + 108143057 TAAAATTGAAAGCAGATATTGTGTACCAAAATTGTCACCTCCAGTCAAGTTGGCTCTGGGGCAAAACT--------CAAGATTCTCTGAGGCTGCTGTGTCC-CCAGTCTTTCCTGGAAATGTCATATGCAATTACCTGTATTCTCTCATCTATCATTCTGAATCCCCCAGGGCATATTCTAGGGTGTTCTGTGAGTAAGGACTGTCCTGGTGCCACCTTCTGCA------------------CGCTGGTTGCCTGCCATCTCCT--GTTTCGAGATTCAAGGCCTCTTAGGCCTGGCTCGACTCCACACTGTACTT---CTCCTGCTGGTGCCAAGTTAACCAACCTGCCTTTCTATTTGGAACCTTCTCTGAAAGCTTTGCCGGCATGTTCTCTCTCACTGGCAAGGTCTCTGCCCCCAATTCTAAAGCTGTGACAACTTCCCT---TTTCCCTCACATCCCTCCATCCTCGTTTGATCTATGACTGC--CCTGGTAGCCAGGTCTG-TGT----TTCTGTGGGTGCTATTCTATGTGTTTCG-----AGGTTCCATTCGCTGCCATACACTTCCTCTGCTGGTCCTCAGCCCAAATTCGAAGCAGGCTAT i micMur3.chr12 I 1 C 0 s proCoq1.NW_012147189v1 633434 553 - 10520994 TAAAGTAGAAAGCAGATATTGTGTATCAAAACTGTCACCTCCAGTCAAGTTGCCTCTGGGGCAAAACT--------CAAGATTCTCTGAGGCTACTGTGTCC-CCAGTCTTTCCTGGAAATGTCCTATGCAAGAACCTATTTTCTATCATGGATCATTCTGAAT-CCCCGGAGCATATTCTAGGGTGTGCT----ATAAGGACTGTCCTGGTGCCACCTTCTGCA------------------CGTGGGTCGCCTGCCATCTCCT--GTTTTGAGATTC-AGGCCTCTTAGGCCTGGCTAGACTCCACACTGTACTT---CTCCTGCTGGTGCCAAATTAGCCAACTTGCCTTTCTATTTTGAACCTTCTCTGAAAGC-TTGTCAGCATGT----TCTCATTGGCAAGGTCTCTGCCGCCAGTTCTAAAGCTGTGACAACTTCCCT---TTTCTCTCTCATCCCTCCAGCCTTGTTTGATCTATGATGGC--CGTGGTAGCCAGGTC---TGT----TTCTGAGGGTGCTATTCTGTGTGCTTGG-----AGGTTCCATTCTATACCATCCACTTCCTACATTGGTCCTCAGCCCAAATTTGAAGCAGGCTAT i proCoq1.NW_012147189v1 I 115 C 0 s otoGar3.GL873536 1327839 537 - 29863360 TAAAATGGAAAGCCAATATTGTGTATCAGAACTGTCACCTCCAGTCACATTGCCTCTGGGGCAAAACG--------CAAGATGCTCTGAGGCTGCTGTGTCC-CAAATATTTCCTGGAAATGTCATAAACAAGAGCTTGTTCTCT----TGGATCACTCTGCAG--CCCAGAGCACATTCAAGTATGTGCTGGGAGTAAGAGCTCTCCTGGTACTGCCTTCCACA------------------CGCTGGTCGCC-ACCATCTCCT--GTTTCAAGATTCAAGGCCTTTCAGGCCTGGCTGGACTTCACACTGTACTTTTCCTCCTGCTGGTGCCAAATCAACCCATCTGCCTTGCTATTTTGAACCTTCTCTGAAGGC-TTGCCAGCATCT----TCTCCCT-ACAGTGTCTCTGCCCCCAATCTGCAAGTGGGGATGACTTGCCT---TTTCCC-CTCCCCCCTCTAGCCCCCTTTGCCCCTTAGCCGC--CCTGGTGGCCAGGCC---TGT----CCTC-----TGCCCTTCTGT-TGTTAGG-----AGGGG--ATTCCCTGCAGTCCCCTTCCCATGCTGG--------CCAAGTTTGAAGCAGGCTAT i otoGar3.GL873536 I 1 C 0 s mm10.chr13 76484114 520 + 120421639 -----------GTAAACATTGTGTGT---AATTGCTTTCTATGGTCAAGTTGACTCTGAAGCAAAACT------------------TGAGGCTGCTGCACATGTAAGTCTTTCCCAGAAACATCCTAACTAAGGACCCAGTTCCTGCTACCAACCCTTCAGACT-TCCTGGTATGTGTATAACGATGAGCTGTG---AGAGGTTCTCCTT---CCCGCTTCTGTG------------------C-TTGGCTGCCTGCCAACACCC--ATCTCAGGA-CAAAGGCCTTTAAGGCTTGGCTACATTCCACATC---CTT---CTCCTTCTGGTGCCAAATCAAGCAGCCCACCTTTGTA-----ATCTCTCTCTCAAAGT-TCTCCAGAAATT----TCTCACTGCCAAGGCCTCTGCCCTTAATCTCAAAGCCTTTCAGGCTTGCCTTTCTTTCCTTCCTATCACTCTGGTTTCCTCTGGTCAGT-ACTCC--CCTTGTACACAGGTCTG-TGT----TGTTGTGGGTGCTGGTCTATGTGTTTAA----AAGGTACTACTCCATGC--TTCCTTTCTGCC-TCTGTCCTCAGCCCAGGTT-AAAGGAAGCTCT i mm10.chr13 C 0 I 111 s canFam3.chr3 14337124 536 + 91889043 GTAAATGGAAGGTAGATAGTGTATATTGAAATTGTCTCCTCCAGCCA-GCTGCC--------AAAACT--------CAAGA--CTGTGAGGCTACAGTGTCC-CAAATCTTTCCTGGAAACATCATAAGCAAGAGC---TTCTCTGTCATCTGTCCTTCTGAAT-CCCTGGAGTGTGTTCTAGAATGTGCTATCAATAAGGATGTT----------CCTCCTGCA------------------CTTTGGTTGTCTGCCATCTTTTTAGTCTCCAGATTCAAGGTCTTTTAGGCTTGGCTAGACTCCACTTTGTA------CTTCTGCTGGTGCCAAATTAACCAATCTGCCTTTCTATTTTGAACCTTCTCTGAAAGA-TATCCAGCAGTT----TCTTATTGCCAAGGTCTCTGTCCCCAGTTTTAAAACCTTACAACCTGTGTT---TTCCCTTGTGATGCCTCTGGCCTCATTTGATCAATGACCAC--CCCTGTGTCCAGGATCC-CAT----TTCTGTGGGTGCTAGTCTACATGTTTTG----AAGGTTCCTCTCCATGCCATCCACTTTCTGCCCTGGTTCCCAGCCCAAATATAGAATGGGCTAT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1266699 547 - 11655695 TAAAAGGAAAGGTAGATATTGTATATCAAAATTGCCATCTCCACTCATGTTGCCACTGGGG--AAACTTGTTTCTATGAGATTC--TGAGGCTGCTGTATCC-CAAATCTTTCCTGGAAACGTTGTGAGAAAGAACCTCTTGTCTATCATTTATCATTCTGAGT-CCCAGGAGTGTATTATAGGATGTGCTGTG---AAAGACACTTCTGGTGTCTCCTCTTACA------------------C-TTTGGTGTCTGCCAACTCTT--ATCGTAAGATTCAGGGCTTCTTAGATATGGCCAGATTCCTCGTTGTACTT---CTTC---TGGCGCCAAATTAACCAGCCTGCCTTTGTATTTTGAACTGCCCCTGAATGC-TTTCCAGCTGTT----TCTTATTGCCAAGTTCTCTGCCCCCAAT---------------GCATGCCT---TTTCCCTTCCATCCTTCTTGCTTAGTTTGATTAATAACCACCTCCCTGAGGCCAGGTTTC-TGT----TTGCTTGGCTGCTGTTCTGTGTATATGGGAGGGAGGTTCCACTCTGTTCCATCCACTTCCTGC-CCAGTTC-CAGCTCAAATATGAAGCAGGCAAT i dasNov3.JH570378 C 0 C 0 a score=57330.000000 s hg38.chr5_GL383530v1_alt 76348 3 + 101241 TTT s panTro5.chr5 20310237 3 + 181907262 TTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20322561 3 + 183735486 TTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809233 3 - 13748885 TTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53841792 3 - 163208435 TTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87864609 3 - 180051392 TTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87969033 3 - 181584905 TTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1196507 3 - 8785636 TTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1660194 3 + 27333823 TTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1929826 3 - 91010382 TTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2049231 3 + 5179401 TTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7752038 3 - 21726897 TTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112561586 3 + 204313951 TTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015024 3 + 71252344 TTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374128 3 - 1393929 TTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1446572 3 - 15889662 TTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84844279 3 + 108143057 TTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 633987 3 - 10520994 TTT i proCoq1.NW_012147189v1 C 0 I 16 s otoGar3.GL873536 1328376 3 - 29863360 TTT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14337660 3 + 91889043 TTT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1267246 3 - 11655695 TTT i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76484634 111 + 120421639 I a score=174997.000000 s hg38.chr5_GL383530v1_alt 76351 16 + 101241 GGTTTCCTTATTCTCT s panTro5.chr5 20310240 16 + 181907262 GGTTTCCTTATTCTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20322564 16 + 183735486 GGTTTCCTTATTCTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809236 16 - 13748885 GGTTTCCTTATTCTCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53841795 16 - 163208435 GGTTTCCTTATTCTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87864612 16 - 180051392 GGTTTCCTTATTCTGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87969036 16 - 181584905 GGTTTCCTTATTCTGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1196510 16 - 8785636 GGTTTCCTTATTCTGT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1660197 16 + 27333823 GGTTTCCTTATTCTGT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1929829 16 - 91010382 GGTTTCCTTATTCTGT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2049234 16 + 5179401 GGTTTCCTTATTCTGT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7752041 16 - 21726897 GGTTTCCTTATTCTGT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112561589 16 + 204313951 GGTTTCCTTTTTCTCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015027 16 + 71252344 GGTTTCCTTTTTCTCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374131 16 - 1393929 GGTTTCCTTTTTCTCC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1446575 16 - 15889662 GGTTTCCTTTTTCTCC i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84844282 16 + 108143057 TGTTGCCTTTTCCCCT i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1328379 14 - 29863360 --GTGCCTTTTCCCCT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14337663 15 + 91889043 -GGTTACTTTTTCTCC i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1267249 15 - 11655695 GGCTACCTTTTCTAC- i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 633990 16 - 10520994 I e mm10.chr13 76484634 111 + 120421639 I a score=613540.000000 s hg38.chr5_GL383530v1_alt 76367 49 + 101241 ------CAGTAAC--GTTCAGGTCTAGACACTGCCCTGGATGTGGGGTTTTATTTTC s panTro5.chr5 20310256 49 + 181907262 ------CAGTAAC--GTTCAGGTCTAGACACTGCCCTGGACGTGGGGTTTTATTTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20322580 49 + 183735486 ------CAGTAAC--GTTCAGGTCTAGACACTGCCCTGGACGTGGGGTTTTATTTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809252 49 - 13748885 ------CAGTAAC--GTTCAGGTCTAGACACTGCCCTGGACGTGGGGTTTTATTTTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53841811 49 - 163208435 ------CAGTAAC--GTTCAGGTCTAGACACTGCCCTGGATGTGAGGTTTTATTTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87864628 49 - 180051392 ------CAGTAAG--GTTCAGGTCTGGGCACTGCCCTGGACATGGGGTTTTATTTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87969052 49 - 181584905 ------CAGTAAG--GTTCAGGTCTGGGCACTGCCCTGGACATGGGGTTTTATTTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1196526 49 - 8785636 ------CAGTAAG--GTTCAGGTCTGGGCACTGCCCTGGACATGGGGTTTTATTTTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1660213 49 + 27333823 ------CAGTAAG--GTTCAGGTCTGGGCACTGCCCTGGATGTGGGGTTTTATTTTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1929845 49 - 91010382 ------CAGTAAG--GTTCAGGTCTGGGCACTGCCCAGGATGTGGGGTTTTATTTTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2049250 49 + 5179401 ------CAGTAAG--GTTCAGGTCTGGGCACTGCCCTGGATGTGGGGTTTTATTTTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7752057 49 - 21726897 ------CAGTAAG--GTTCAGGTCTGGGCACTGCCCTGGACGTGGGGTTTTCTTTTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112561605 49 + 204313951 ------CTGTAAG--GTTCAGGTGTAGCCACTGCCCTGGAAATGGGGTTTCATTTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015043 49 + 71252344 ------CAGTAAG--GTTCAGTTCTAGGCACTGCCCTGGAAATGGGGTTTCATTTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374147 49 - 1393929 ------CAGTAAA--GTTCAGGTCTAGCCACTGCCCTGGAAATGGGCTTTCATTTTC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1446591 49 - 15889662 ------CAGTAAG--ATTCAGGTCTAGCCACTGCCCTGGAAATGGGGCTTCATTTTC i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84844298 32 + 108143057 ------------------------CAGGCTCTGCCCTGGACATGAG-TTTTATTTTC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 634006 48 - 10520994 ------CAGACAG--ACTCAGGTCTAGGCACTGCCCTGGACATGAA-TTTTATTTTC i proCoq1.NW_012147189v1 I 16 C 0 s otoGar3.GL873536 1328393 48 - 29863360 ------CACGCAG--GCTCTGGTCTAGGCACTGCCATGGACATGAG-TTTTATTTCC i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14337679 49 + 91889043 ------TTGATGG--GTTCAGGTCTAATTATGACCATGGACATGGGTTGTTTTTTGT i canFam3.chr3 I 1 C 0 s dasNov3.JH570378 1267264 56 - 11655695 ATGGGGCGGGGGGCTGTTCAGTTCTTGGCAGTACTCTAGGCATGGG-TTTTATTTTC i dasNov3.JH570378 C 0 C 0 e mm10.chr13 76484634 111 + 120421639 I a score=2699956.000000 s hg38.chr5_GL383530v1_alt 76416 194 + 101241 TTTCACGTGGGTGTCAT-GAGAGTCATTGTAATCCCCATGATATTAGTTGAAAACAAAGGTGTTGGATAGTGACTGTACATATACCTGAATACTTGCATCAAATAG-GGGATTTTGGAAAATAGATCCTAAAAGGGAAACTTCTCATGG--TGGAGAGTCAGTGAGGTG-AATATTTTTAAG--------T--TATTTTACTTGTTTTT s panTro5.chr5 20310305 194 + 181907262 TTTCACGTGGGTGTCAT-GAGAGTCATTGTAATCCCCATGATATTAGTTGAAAACAAAGGTGTTGGATAGTGACCGTACATATATCTGAATACTTGCATCAAATAG-GGGATTTTGGAAAATAGATCCTAAAAGGGAAACTTCTCATGG--TGGAGAGTCAGTGAGGTG-AATATTTTTAAG--------T--TATTTTACTTTTTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20322629 194 + 183735486 TTTCACGTGGGTGTCAT-GAGAGTCATTGTAATCCCCATGATATTAGTTGAAAACAAAGGTGTTGGATAGTGACCGTACATATACCTGAATACTTGCATCAAATAG-GGGATTTTGGAAAATAGATCCTAAAAGGGAAACTTCTCATGG--TGGAGAGTCAGTGAGGTG-AATATTTTTAAG--------T--TATTTTACTTTTTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809301 194 - 13748885 TTTCACGTGGGTGTCAT-GAGAGTCGTTGTAATCCCCATGATATTAGTTGAAAACAAAGGTGTTGGATAGTGACTGTACATATACCTGAATACTTGCATCAAATAG-GGGATTTTGGAAAATAGATCCTAAAAGGGAAACTTCTCATGG--TGGAGAGTCAGTGAGGTG-AATATTTTTAAG--------T--TATTTTACTTGTTTTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53841860 191 - 163208435 TTTCACGTGAGTGTCAT-GAGAGTCATTGTAATTCAC---ATATTAGTTGAAAACAAAGGTGTTAGATAGTGACTGTAAATATACCTGAATACTTGCATCAAATAG-GGGATTTTGGAAAATAGATCCCAAAACGGAAACTTCTCATGG--TGGAGAGTCAGTGAGGTG-AATATTTTTAAG--------T--TATTTTACTTGTTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87864677 193 - 180051392 TTTCACGTGGGTATCAT-GAGAGTCATTGTAATCCCCATGATATTAGTTGAAAACGAAGGTGTTGGATAGTGACTGTACATACACCTGAATAC-TGCATCAAATAG-GGAATTTTGGTACATAGATCCTATAAAGGAAACTCCTCATGG--TGGAGAGTCAGTGAGGTG-AATATTTTTAAG--------T--TATTTTACTTATTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87969101 193 - 181584905 TTTCACGTGGGTATCAT-GAGAGTCATTGTAATCCCCATGATATTAGTTGAAAACGAAGGTGTTGGATAGTGACTGTACATACACCTGAATAC-TGCATCAAATAG-GGAATTTTGGTACATAGATCCTATAAAGGAAACTCCTCATGG--TGGAGAGTCAGTGAGGTG-AATATTTTTAAG--------T--TATTTTACTTATTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1196575 193 - 8785636 TTTCACGTGGGTATCAT-AAGAGTCATTGTAATCCCCATGATATTAGTTGAAAACGAAGGTGTTGGATAGTGACTGTACATACACCTGAATAC-TGCATCAAATAG-GGAATTTTGGTACATAGATCCTATAAAGGAAACTCCTCATGG--TGGAGAGTCAGTGAGGTG-AATATTTTTAAG--------T--TATTTTACTTATTTTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1660262 193 + 27333823 TTTCACGTGGGTATCAT-GAGAGTCATTGTAATCCCCATGATATTAGTTGAAAACAAAGGTGTTGGATAGTGACTGTACATACACCTGAATAC-TGCATCAAATAG-GGAATTTTGGTAAATAGATCCTATAAAGGAAACTCCTCATGG--TGGAGAGTCAGTGAGGTG-AATATTTTTAAG--------T--TATTTTACTTATTTTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1929894 193 - 91010382 TTTCACGTGGGTGTCAT-GAGAGTCATTGTAATCCCCATGATATTAGTTGAAAACAAAGGTGTTGGATAGTGACTGTACATATACCTGAATAC-TGCATCAAATAG-GGAATTTTGGTAAATAGATCCTATAAAGGAAACTCCTCATGG--TGGAGAGTCAGTGAGGTG-AATATTTTTAAG--------T--TATTTTACTTATTTTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2049299 193 + 5179401 TTTCACGTGGGTGTCAT-GAGAGTCATTGTAATCCCCATGATATTAGTTGAAAACAAAGGTGTTGGATAGTGACTGTACATATACCTGAATAC-TGCATCAAATAG-GGAATTTTGGTAAATAGATCCTATAAAGGAAACTCCTCATGG--TGGAGAGTCAGTGAGGTG-AATATTTTTAAG--------T--TATTTTACTTATTTTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7752106 193 - 21726897 TTTCACGTGGGTGTCAT-GAGCGTCATTGTAATCCCCGTGATATTAGTTGAAAACAAAGGTGTTGGATAGTGACTGTACATATACCTGAATAC-TGCATCACATAG-GGAATTTTGGTAAATAGATCCTATAAAGGAAACTCCTCATGG--TGGAGAGTCAATGAGGTG-AATATTTTTAAG--------T--TATTTTACTTGTTTTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112561654 187 + 204313951 TTTCACGTGGGTGTCAT-GAGAGTCATTGTAATCCCCATGATACTAGTTGAAAACTAA-------AATAGTGACTGTACATGTACCTGAATACCTGCATCAAATAG-GGGATTTTGGAAAATAGATCCTAAAAAGGAAACTCCTCATGG--TGGAGAGTCAGTGAAGTG-AATATTTTTAAG--------T--TATTTTAGTTGTTTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015092 187 + 71252344 TTTCACGTGGGTGTCAT-GAGAGTCATTGTTATCTCCATGATATTAGTTGAAAACTGA-------AATAGTGACTGTATATGTACCTGAATATCTGCATCAAATAG-GGGATTTCGGAAAACAGATCCTAAAAAGGAAACTCCTCATGG--TGGAGAGTCAGTGAAGTG-AATATTTTTAAG--------T--TATTTTAGTTGTTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374196 187 - 1393929 TTTCATGTGGATGTCAT-GAGAGTCATTGTAATTCCCATGATATTAGTTGAAAACTAA-------AATAGTGACTGTACATTTACCAGAATACCTGGATCAAATAG-GGGATCTCAGAAAATAGATCCTAAAATGGAAACTCCTCATGG--TGGAGAGTCAGCGAAGTG-AATATTTTTAAG--------T--TATTTTAGTTGTTTTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1446640 187 - 15889662 TTTCACGTGGGTGTCAT-GAGAGTCATTGTAATCCCCATGATATTAGTTGAAAACTAA-------AATAGTGACTGTACATTTACCTGAATACCTGCATCAAATAG-GGGATTTCGGAAAATAGATCCTAAAAAGGAAACTCCTCATGG--TGGAGAGTCAGTGAAGTG-AATATTTTTAAG--------T--TATTTTAGTTGTTTTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84844330 193 + 108143057 TGTCATGTGGGTGTCGC-AAGAGTCATCGTTAT-CCCATGGTATCAGTTGAGAACTAA-GTGTTGGATAGTGACTGTACGTATCCCTAAATACCTGCCTCAGAGAGAGGGGCTTTGGGAAACAGATCCTAAAAAGAAAACTCCTTATGG--CAGAAAGTCAGTGGGGTG-AATATTTTTAAG--------T--TATTTTACTTGTTTTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 634054 193 - 10520994 TATCATGTGGGTGTCAC-AAGAGTCATTGGTATCCCCGTGATATCAGTTGAGAACTAA-GTGTTGGATAGTGACTGTATGTATCCCTAAATACCTGTCTCAGACAGGGGGGCTTTGGAAAACAGATCCTAAAAAGAAAACTCCTTATGG--CAGAAAGTCAGT-GGGTG-AATATTTTTAAG--------T--TATTTTACTTGTTTTT i proCoq1.NW_012147189v1 C 0 I 332 s otoGar3.GL873536 1328441 193 - 29863360 TGTCACTTGGCTGTCCC-GAGTGCCACCATTACACCTGTGGTGTTAGTTGAGAACTGA-GTTTTGGACAGCGAGTGTACATATCCCTGAATACCTGCATCAGGTCGGGGGTTTGGGGAAAACAGACCCTAAAAAGAAAATTCCTTAAGT--TGGAAAGTCAGTGGGGTG-AATATTTTC-AG--------T--TATTTTACTTGTTGTT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76484745 160 + 120421639 TTTCATGTGACTGTCA--GAGAGTCGTT---ATCCCAATGATTTTAGTTGAAAACAAG--------------------------------TATTTGCATCTCACAT----ATTTTAAAAACAAATTTCTAAAATGGAAATTTCTAATGGAAAAAAAAGCCAGAGAGATTCAGTATTGGAAAA--------TGGCCTCTGATGTGGTTTT i mm10.chr13 I 111 C 0 s canFam3.chr3 14337728 145 + 91889043 TTTCATGTGGGTGTCAT--AGAGTCATTATTGTCTCCATGATATTAGTTGAAAGTTAACATGT-------------------------------TGGATCAAGTAG-AGGATTTTTGAAAACAGATCCTAAGAAGGAAACTTCTAATGA--TTGAAAGTAAATGAGGTG-AATATTTTAAGG--------------------------- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1267320 188 - 11655695 TTTCATATGGGTGTCATTAAGAGTTCTTG----CTCCATGATAC---TTAAAAACTAATGTGTTGGATAGTGACTGTACATACACCTGAACATCTGCTTTAAATAG-GAGATTATTgaaaagaaactctaaaaaggaaaccttgagtgg--tgaaaagttag-gtggag-aatatttttaagagggagcct--tgttttcct------- i dasNov3.JH570378 C 0 C 0 a score=94978.000000 s hg38.chr5_GL383530v1_alt 76610 6 + 101241 CCCTCA s panTro5.chr5 20310499 6 + 181907262 CCCTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20322823 6 + 183735486 CCCTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809495 6 - 13748885 CCCTCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842051 6 - 163208435 CCCTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87864870 6 - 180051392 CCCTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87969294 6 - 181584905 CCCTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1196768 6 - 8785636 CCCTCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1660455 6 + 27333823 CCCTCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1930087 6 - 91010382 CCCTCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2049492 6 + 5179401 CCCTCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7752299 6 - 21726897 CCCTCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112561841 6 + 204313951 CCCTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015279 6 + 71252344 CCCTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374383 6 - 1393929 CCCTCA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1446827 6 - 15889662 CCCCCA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84844523 6 + 108143057 CCCTCA i micMur3.chr12 C 0 I 439 s otoGar3.GL873536 1328634 6 - 29863360 CCCTCA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76484905 6 + 120421639 GTGTCA i mm10.chr13 C 0 I 7 s dasNov3.JH570378 1267508 5 - 11655695 -cctca i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14337873 0 + 91889043 C e proCoq1.NW_012147189v1 634247 332 - 10520994 I a score=2067321.000000 s hg38.chr5_GL383530v1_alt 76616 212 + 101241 AATCATTTCTCACAGGTACCACCTGATCATAAGATAAGC-TTTGCTCTCCTCTTTCTTTCATAC------------AGTTTCAGTTTCCCGTTCACCAT-GG-----------------CAGGTAATTTTTCCACgcagtaga--------gtgagggtagggttgagttgtaggcagccaa-actgcctgggtttgaatcccactttggccacttattagcattaggtgtgtgatcttgagtgatgttttc s panTro5.chr5 20310505 212 + 181907262 AATCATTTCTCACAGGTACCACCTGATCATAAGATAAGC-TTTGCTCTCCTCTTTCTTTCATAC------------AGTTTCAGTTTCCCGTTCACCAT-GG-----------------CAGGTAACTTTTCCACgcagtaga--------ttgagggtagggttaagttgtaggcagccaa-actgcctgggtttgaatccccctttggccacttattagtattaggtgtgtgatcttgagtgatgttttc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20322829 212 + 183735486 AATCATTTCTCACAGGTACCACCTGATCATAAGATAAGC-TTTGCTCTCCTCTTTCTTTCATAC------------AGTTTCAGTTTCCCGTTCACCAT-GG-----------------CAGGTAACTTTTCCACgcagtaga--------ttgagggtagggttaagttgtaggcagccaa-actgcctgggtttgaatccccctttggccacttattagtattaggtgtgtgatcttcagtgatgttttc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809501 212 - 13748885 AATCATTTCTCACAGGTACCACCTGATCATAAGATAAGT-TTTGCTCTCCTCTTTCTTTCATAC------------GGTTTCAGTTTCCCGTTCACCAT-GG-----------------CAGGTAACTTTTCCACGCAGTAGA--------GTGAGGGTAGGGTTAAGTTGTAGggagccaa-actgcctgggtttgaatccccctttggccacttattagtattaggtgtgtgatcttgagtgatgttttc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842057 212 - 163208435 AATCATTTCTCACAGGTACCACTTGATCATAAGATTAGC-TTTGCTCTCCTCTTTCTTTCATAC------------GGTTTCAGTTTCCCATTCACCAT-GG-----------------CAGGTAACTTTTCCACGCAGTAGA--------GTGAGGGTAGGGTTAAGTTGCAGggagccga-actgcctgggtttgaatccccctttggccacttattagtattaggcgtgtgatcttgggtgatgtttta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87864876 202 - 180051392 AATCATTTCTCGCAGGTACCACCTGATCATAAGATAAGC-TCTGCTCACC----TCTTTCAGAC------------GGTTTCAATTTCCTGTTTGCCAT-GG-----------------CAGATAACTTTTCCACGCAGTAGA--------GTGCGggcagggttaagttgtagggagccga-actgcctgggtttgaatccccctttggccactt------attaggtgtgtgatcttgagtgatgttttc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87969300 202 - 181584905 AATCATTTCTCGCAGGTACCACCTGATCATAAGATAAGC-TCTGCTCACC----TCTTTCAGAC------------GGTTTCAATTTCCTGTTCGCCAT-GG-----------------CAGATAACTTTTCCACGCAGTAGA--------GTGCGGGCAGGGTTAAGTTGTAGggagccga-actgcctgggtttgaatccccctttcgccactt------attaggtgtgtgatcttgagtgatgttttc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1196774 202 - 8785636 AATCATTTCTCGCAGGTACCACCTGATCATAAGATAAGC-TCTGCTCACC----TCTTTCAGAC------------GGTTTCAATTTCCTGTTCGCCAT-GG-----------------CAGATAACTTTTCCACGCAGTAGA--------GTGCGggcagggttaagttgtagggagccga-actgcctgggtttgaatccccctttggccactt------attaggtgtgtgatcttgagtgatgttttc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1660461 206 + 27333823 AATCATTTCTCGCAGGTACCACCTGATCATAAGATAAGC-TCTGCTCACCTCTTTCTTTCAGAC------------GGTTTCAATTTCCTGTTCGCCAT-AG-----------------CAGGTAACTTTTCCACgcagtaga--------gtgagggcagggttaagttgtagggagccga-actgcctgggtttgaatccccctttggccactt------attaggtgtgtgatcttgaatgatgttttc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1930093 206 - 91010382 AATCATTTCTCGCAGGTACCACCTGATCATAAGATAAGC-TCTGCTCACCTCTTTCTTTCAGAC------------GGTTTCAATTTCCTGTTCGCCAT-AG-----------------CAGGTAACTTTTCCACgcagtaga--------gtgagggcagggttaagttgtagggagccga-actgcctgggtttgaatccccctttggccactt------attaggtgtgtgatcttgagtgatgttttc i chlSab2.chr4 C 0 I 19 s manLeu1.NW_012103732v1 2049498 202 + 5179401 AATTATTTCTCGCAGGTACCACCTGATCATAAGATAAGC-TCTGCTCACC----CCTTTCAGAC------------GGTTTCAATTTCCTGTTCGCCGT-GG-----------------CAGATAACTTTTCCAtgcagtaga--------gtgagggcagggttaagttgtagggagccga-actgcctgggtttgaatccccctttggccactt------attaggtgtgtgatcttgagtgatgttttc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7752305 202 - 21726897 AATCATTTCTCGCAGGTACCACCTGATCATAATATAAGC-TCTGCTCACC----TCTTTCAGAC------------GGTTTCAATTTCCTGTTCGCCAT-GG-----------------CAGGTAACTTTTCCACGCAgtaga--------gtgagggcagagttaagttgtagggagccga-actgcctgggtttgaatcccactttgggcactt------attaggtgtgtgatcttgagtgatgttttc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112561847 206 + 204313951 AATCATTTCTCTCAGGTACCACCTAATCATAAGACAAGC-TCTGCTCTCCCCTTTCTTTCATAT------------GGTTTCAATTTCCTGTTCATCAT-GG-----------------CAGGTAACTTTTCCATGCAGTAGA--------GTGGGGGCAGGGATAAGTTGTAGggagctga-actgcctgggtttaaatccccctttggccactc------attaggtgtgtaatcttgagtgatgttttc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015285 206 + 71252344 AATTACTTCTCTCAGGTACCACCTAATCGTAAGATAAGC-TCTGCTCTCCCCTTTCTTTCATAC------------AGTTTCAATTTCCTGTTCATCAT-GG-----------------CGGGTCACTTTCCCATGCAGTAGA--------GTGGGGGCAGGGATAAGTTGTAGggagccga-actgcctgggtttaaatccccctttggccactc------attaggtgtgtgatcttgagtgatgttttc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374389 218 - 1393929 AATCATTTCTCTCAGGTACTACCTAATCATGAGCTAAGC-TCTGCTCTTCCCTTTCTTTCCCCTTTCTTTCCAACAGGTTTCAATTTCCTGTTCATCGT-GG-----------------CAGGTAACTTTTCCACTcagtgga--------gtaggggcagggataagttgtagggagccga-actgcctgggtttaaatcctcctttggccattc------attaggtgtgtgatcttgggtgatgttttc i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1446833 206 - 15889662 AATCATTTCTCTCAGGTACCACCTAATCATAAGATAAGC-TCTGCTCTCCCCTTTCTTTCATAC------------GGTTTCAATTTCCTGTTCATCGT-GG-----------------CAGGTAACTTTTCCATGCggtaga--------gtgggagcagggataagttgtagggagccga-actgcctgggtttaaatccccctttggccactc------attaagtgtgtgatcttgagtgatgttttc i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1328640 191 - 29863360 AAT---------CAGGTACCACCTGACTGTCAGATAACTGTGTGCTCTCCCCTTTCCTTCCTGC------------AATTTCCAGTTCCTGTTCATCAT-CG-----------------CAGGTGACGACTCCAGGCAGTTGT--------GTGGggctaggggccagctgtggagagccca-actgcatgggtttgagtcccacctaggccactg------atttgatgtgtcatcttgagtga------- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76484918 198 + 120421639 TTTTGTGCCCAGCAGGACATCCCTG---------------TCTGCTCAT-----GCATTCACAC------------AGCTTCATGGTCCTGATCCCCAG-GGATACAGCATGCATAAGTCAGGCTGTGGATGCAGGCTGTGGATGCAGGCTGTGGATGCAGGCTGTGGATGCAGGCTGTGGATACAGGCTGTG---GAATGC--CTTCGAC-----------ACTACATCTACAGTCTTTGGTGATG----- i mm10.chr13 I 7 I 2 s canFam3.chr3 14337873 67 + 91889043 ---------------------------------------------------------------------------AGGTGTCTTTCTTTTCTTTTTCTT-AA-------------------------------------------------AT------------------------------CATGCCT----CTGGATACC-------------------ATT-------TGATCATAAGAGAAGCTCTG i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1267513 199 - 11655695 aaacatgcctcatagataccacctGAT--TAAAATAAAT-CCTGCCCTTCTCTTTCCTTCCC-T------------AGTGTCAAGTTCTTGGTCACCATAAG-----------------CAAA-----ACTCAAGGCAGtaga--------atggagttaggggcaagttctagggtgccac-agagcttggtttagaatcccacatcagccaaccg-----atcaggtgtgtgatcttgagtgacaggct- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634247 332 - 10520994 I a score=27983.000000 s hg38.chr5_GL383530v1_alt 76828 4 + 101241 tctt s panTro5.chr5 20310717 4 + 181907262 tctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323041 4 + 183735486 tctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809713 4 - 13748885 tctt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842269 4 - 163208435 tctt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87865078 4 - 180051392 cctt i rheMac8.chr6 C 0 I 122 s macFas5.chr6 87969502 4 - 181584905 cctt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1196976 4 - 8785636 cctt i macNem1.NW_012011400v1 C 0 I 40 s cerAty1.NW_012002401v1 1660667 4 + 27333823 cctt i cerAty1.NW_012002401v1 C 0 C 0 s manLeu1.NW_012103732v1 2049700 4 + 5179401 cctt i manLeu1.NW_012103732v1 C 0 I 46 s colAng1.NW_012115488v1 7752507 4 - 21726897 cctt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562053 3 + 204313951 -ttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015491 3 + 71252344 -ttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374607 3 - 1393929 -ttt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447039 3 - 15889662 -ttt i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14337941 4 + 91889043 CCTT i canFam3.chr3 I 1 C 0 e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634247 332 - 10520994 I e dasNov3.JH570378 1267712 0 - 11655695 C e mm10.chr13 76485116 2 + 120421639 I e otoGar3.GL873536 1328831 0 - 29863360 C e chlSab2.chr4 1930299 19 - 91010382 I a score=2354.000000 s hg38.chr5_GL383530v1_alt 76832 1 + 101241 c s panTro5.chr5 20310721 1 + 181907262 c i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323045 1 + 183735486 c i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809717 1 - 13748885 c i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842273 1 - 163208435 c i nomLeu3.chr2 C 0 C 0 s cerAty1.NW_012002401v1 1660671 1 + 27333823 c i cerAty1.NW_012002401v1 C 0 I 19 s colAng1.NW_012115488v1 7752511 1 - 21726897 c i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562056 1 + 204313951 t i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015494 1 + 71252344 t i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374610 1 - 1393929 t i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447042 1 - 15889662 t i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14337945 1 + 91889043 C i canFam3.chr3 C 0 I 1 e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634247 332 - 10520994 I e dasNov3.JH570378 1267712 0 - 11655695 C e mm10.chr13 76485116 2 + 120421639 I e otoGar3.GL873536 1328831 0 - 29863360 C e manLeu1.NW_012103732v1 2049704 46 + 5179401 I e chlSab2.chr4 1930299 19 - 91010382 I e macNem1.NW_012011400v1 1196980 40 - 8785636 I e macFas5.chr6 87969506 0 - 181584905 C e rheMac8.chr6 87865082 122 - 180051392 I a score=9643.000000 s hg38.chr5_GL383530v1_alt 76833 29 + 101241 tcttctctttttcttttc--tttcttttcat s panTro5.chr5 20310722 29 + 181907262 tcttctctttttcttttc--tttcttttcat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323046 29 + 183735486 tcttctctttttcttttc--tttcttttcat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809718 29 - 13748885 tcttctctttttcttttc--tttcttttcat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842274 29 - 163208435 tcttctctttttcttttc--tttcttttcat i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87969506 29 - 181584905 tcctctcctcccctcccc--tcccctgccct i macFas5.chr6 C 0 C 0 s colAng1.NW_012115488v1 7752512 3 - 21726897 ----------------------------cct i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562057 20 + 204313951 tcttctcttcttgtttc-------ttt---- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015495 25 + 71252344 tcttctctttttgtttct--ttttttt---- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374611 25 - 1393929 tcttctctttttgtttct--ttctttc---- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447043 25 - 15889662 tcttctctttttgtttct--ttctttt---- i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1328831 5 - 29863360 ------cattt-------------------- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76485118 25 + 120421639 tctttttctttctttctc--ttttttt---- i mm10.chr13 I 2 C 0 s canFam3.chr3 14337947 31 + 91889043 TTTTCCTTCACAGTTTCAAGTTCCTCTTCAT i canFam3.chr3 I 1 I 102 s dasNov3.JH570378 1267712 1 - 11655695 ------------g------------------ i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634247 332 - 10520994 I e manLeu1.NW_012103732v1 2049704 46 + 5179401 I e chlSab2.chr4 1930299 19 - 91010382 I e cerAty1.NW_012002401v1 1660672 19 + 27333823 I e macNem1.NW_012011400v1 1196980 40 - 8785636 I e rheMac8.chr6 87865082 122 - 180051392 I a score=2186.000000 s hg38.chr5_GL383530v1_alt 76862 2 + 101241 tt s panTro5.chr5 20310751 2 + 181907262 tt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323075 2 + 183735486 tt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809747 2 - 13748885 tt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842303 2 - 163208435 tt i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87969535 2 - 181584905 cc i macFas5.chr6 C 0 C 0 s colAng1.NW_012115488v1 7752515 2 - 21726897 cc i colAng1.NW_012115488v1 C 0 C 0 s dasNov3.JH570378 1267713 2 - 11655695 tt i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14337978 102 + 91889043 I e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634247 332 - 10520994 I e mm10.chr13 76485143 0 + 120421639 C e otoGar3.GL873536 1328836 0 - 29863360 C e aotNan1.NW_018506370v1 1447068 0 - 15889662 C e cebCap1.NW_016107830v1 374636 0 - 1393929 C e saiBol1.JH378106 45015520 0 + 71252344 C e calJac3.chr2 112562077 0 + 204313951 C e manLeu1.NW_012103732v1 2049704 46 + 5179401 I e chlSab2.chr4 1930299 19 - 91010382 I e cerAty1.NW_012002401v1 1660672 19 + 27333823 I e macNem1.NW_012011400v1 1196980 40 - 8785636 I e rheMac8.chr6 87865082 122 - 180051392 I a score=11456.000000 s hg38.chr5_GL383530v1_alt 76864 3 + 101241 -ctt s panTro5.chr5 20310753 3 + 181907262 -ctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323077 3 + 183735486 -ctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809749 3 - 13748885 -ctt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842305 3 - 163208435 -ctt i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87969537 3 - 181584905 -ccc i macFas5.chr6 C 0 C 0 s manLeu1.NW_012103732v1 2049750 3 + 5179401 -ctc i manLeu1.NW_012103732v1 I 46 C 0 s calJac3.chr2 112562077 3 + 204313951 -ctt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015520 3 + 71252344 -ctt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374636 3 - 1393929 -ctt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447068 3 - 15889662 -ctt i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1328836 3 - 29863360 -ctt i otoGar3.GL873536 C 0 I 1 s mm10.chr13 76485143 3 + 120421639 -ctt i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1267715 3 - 11655695 gat- i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14337978 102 + 91889043 I e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634247 332 - 10520994 I e colAng1.NW_012115488v1 7752517 0 - 21726897 C e chlSab2.chr4 1930299 19 - 91010382 I e cerAty1.NW_012002401v1 1660672 19 + 27333823 I e macNem1.NW_012011400v1 1196980 40 - 8785636 I e rheMac8.chr6 87865082 122 - 180051392 I a score=23194.000000 s hg38.chr5_GL383530v1_alt 76867 8 + 101241 ttc-ttttt s panTro5.chr5 20310756 8 + 181907262 ttc-ttttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323080 8 + 183735486 ttc-ttttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809752 8 - 13748885 ttc-ttttt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842308 8 - 163208435 ttc-ttttt i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87969540 2 - 181584905 -------cc i macFas5.chr6 C 0 I 68 s macNem1.NW_012011400v1 1197020 7 - 8785636 -cc-ctccc i macNem1.NW_012011400v1 I 40 I 1 s manLeu1.NW_012103732v1 2049753 7 + 5179401 -cc-ctccc i manLeu1.NW_012103732v1 C 0 I 1 s colAng1.NW_012115488v1 7752517 7 - 21726897 -cc-ttccc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562080 8 + 204313951 ttc-ttttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015523 8 + 71252344 ttc-ttttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374639 8 - 1393929 ttc-ttttt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447071 9 - 15889662 ttctttttt i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1328840 8 - 29863360 acc-tttgt i otoGar3.GL873536 I 1 C 0 s mm10.chr13 76485146 7 + 120421639 -tc-ttttc i mm10.chr13 C 0 I 2 s dasNov3.JH570378 1267718 8 - 11655695 ctc-tctat i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14337978 102 + 91889043 I e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634247 332 - 10520994 I e chlSab2.chr4 1930299 19 - 91010382 I e cerAty1.NW_012002401v1 1660672 19 + 27333823 I e rheMac8.chr6 87865082 122 - 180051392 I a score=15531.000000 s hg38.chr5_GL383530v1_alt 76875 2 + 101241 tc s panTro5.chr5 20310764 2 + 181907262 tc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323088 2 + 183735486 tc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809760 2 - 13748885 tc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842316 2 - 163208435 tc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87865204 2 - 180051392 tc i rheMac8.chr6 I 122 C 0 s macFas5.chr6 87969610 2 - 181584905 TT i macFas5.chr6 I 68 C 0 s macNem1.NW_012011400v1 1197028 2 - 8785636 tc i macNem1.NW_012011400v1 I 1 C 0 s manLeu1.NW_012103732v1 2049761 2 + 5179401 tc i manLeu1.NW_012103732v1 I 1 C 0 s colAng1.NW_012115488v1 7752524 2 - 21726897 tc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562088 2 + 204313951 tc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015531 2 + 71252344 tc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374647 2 - 1393929 tc i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447080 2 - 15889662 tc i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1328848 2 - 29863360 tc i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76485155 1 + 120421639 T- i mm10.chr13 I 2 C 0 s dasNov3.JH570378 1267726 2 - 11655695 tc i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14337978 102 + 91889043 I e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634247 332 - 10520994 I e chlSab2.chr4 1930299 19 - 91010382 I e cerAty1.NW_012002401v1 1660672 19 + 27333823 I a score=526753.000000 s hg38.chr5_GL383530v1_alt 76877 58 + 101241 tttattttcttttcagacagtgtctcactc---------ttactctgttgcccaggcacaatcatag s panTro5.chr5 20310766 58 + 181907262 tttattttcttttcagacagtgtctcactc---------ttactctgttgcccaggcacaatcatag i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323090 58 + 183735486 tttattttcttttcagacagtgtctcactc---------ttactctgttgcccaggcacaatcacag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809762 58 - 13748885 tttattttcttttcaggcagtgtctcactc---------ttactctgttgcccaggcataatcatag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842318 58 - 163208435 ttcattttcttttcagacagtgtctcactc---------ttactctgttgcccaggcacaatcatag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87865206 56 - 180051392 TTTATTTTCTTTCAAGATGGTGTCTCACCc---------ttactgtgttgcccaggcacaatc--ag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87969612 56 - 181584905 TTTATTTTCTTGTCAGATGGTGTCTcactc---------ttactgtgttgcccaggcacaatc--ag i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1197030 56 - 8785636 tttattttcttgtcagatggtgtctcactc---------ttactgtgttgcccaggcacaatc--ag i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1660691 56 + 27333823 tttattttcttgtcagacagtgtctcactc---------ttactctgttgctcaggcacaatg--ag i cerAty1.NW_012002401v1 I 19 C 0 s chlSab2.chr4 1930318 56 - 91010382 tttattttcttgtcagacagtgtctcactc---------ttactctgttgcccaggcacaatc--ag i chlSab2.chr4 I 19 C 0 s manLeu1.NW_012103732v1 2049763 56 + 5179401 TTTATTTTCTTGTCAAACGGTGTCTcactc---------ttactgtgttgcccaggcacaatc--ag i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7752526 56 - 21726897 tttattttcttgtcagacagtgtctcactc---------ttactctgttgcccaggcacaatc--ag i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562090 58 + 204313951 tttattttcttttcagacagtgtctcattc---------ttactctgtcgtccaggcacaatcatag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015533 58 + 71252344 tttattttcttttcagacagtgtctcattc---------ttactctcttgtccaggcacaatcatag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374649 58 - 1393929 tttattttcttttcagacagtgtctcattc---------ttactctgttgtccaggcacaatcatag i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447082 58 - 15889662 tttattttcttttcagacagtgcctcattc---------ttactctgttgtccaggcacaatcacag i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1328850 37 - 29863360 cttagtttc--------------ctcatgc---------ataaaatg-------ggcataaaaatag i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76485156 59 + 120421639 Tttttggtctttcaaggcagggtttcatataaagaagggtttctttgttgtcctggacc-------- i mm10.chr13 C 0 C 0 s dasNov3.JH570378 1267728 37 - 11655695 cttaatttc--------------cccatgt---------atgaaatg-------ggcataataatag i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14337978 102 + 91889043 I e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634247 332 - 10520994 I a score=773749.000000 s hg38.chr5_GL383530v1_alt 76935 92 + 101241 ctcactgca----------ggctcagactcctgggctcaagctatcctcctgcctcaacctcccgaggagttaggactacaggtgcaagctaccatgcttgg s panTro5.chr5 20310824 92 + 181907262 ctcactgca----------ggctcagactcctgggctcaagctatcctcctgcctcaacctcccgaggagttaggactacaggtgcaagctaccatgcttgg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323148 92 + 183735486 ctcactgca----------ggttcagactcctgggctcaagctatcctcctgcctcaacctcccgaggagttaggactacaggtgcaagctaccatgcttgg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809820 92 - 13748885 ctcactgca----------ggctcagactcctgggctcaagctatcctcccacctcaacctcccgaggagttaggactacaggtgcaagctaccatgcttgg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842376 88 - 163208435 ctcactgca----------gcttcagactcctgggctcaag----cctcccgcctcaacctcccgaggagttaggactacaggtgcaagctaccatgctcgg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87865262 92 - 180051392 ctcactgca----------gcctcaaactcctggactcaagctatcctcccacctcaatctccggaggagttaggactgcaggtgcaagctaccatgctcgg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87969668 92 - 181584905 ctcactgca----------gcctcaaactcctggactcaagctatcctcccacctcaatctccggaggagttaggactgcaggtgcaagctaccatgctcgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1197086 92 - 8785636 ctcactgca----------gcctcaaactcctggactcaagctatcctcccacctcaatctccggaggagttaggactgcaggtgcaagctaccatgctcgg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1660747 92 + 27333823 ctcattgca----------gcctcaaactcctgggctcaagctatcctcccacctcaatctccagaggagttaggactgcaggtgcaaactaccatgctccg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1930374 92 - 91010382 ctcactgca----------gcctcaaactcctgggctcaagctatcctcccacctcaatctccggaggagttaggactgcagttgcaagctaccatgctcgg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2049819 92 + 5179401 ctcactgca----------gcctcaaactcctggactcaacctatcctcccacctcaatctccggaggagttaggactgcaggtgcaagctaccatgctcgg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7752582 91 - 21726897 ctcactgca----------gcctcaaactcctgggctcaagctatcctcccacctcaatctccggaggagttaggactgcaggtgcaa-ctaccatgcttgg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562148 87 + 204313951 ctcaccgca----------gcttcaaactcccaggctcaagcaatcctcccccatcaatctcctgaggagttaggattataggtgcaagctaccat-----g i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015591 87 + 71252344 ctcaccgca----------gcctcaaactcccgggctcaagcaatcctcccccttcaatctcccgaggagttagggctataggtgcaagctaccat-----g i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374707 85 - 1393929 ctcaccaca----------gcctcaaactcccgggctcaagcaatcctcccccctcaatcccctgaggacttaggactata-gtgcaagctaccat------ i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447140 86 - 15889662 ctcaccaca----------gcctcaaactcccgggctcaagcaatcctcccgc-tcagtctcctgaggagttaggactataggtgcaagctatcat-----g i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76485215 84 + 120421639 tgctctgtagagcaagcaggcctcaaactcagaggcct---ctatctccccatt---------------gttggggttaaaggcatgacccacAAGTCTTTG i mm10.chr13 C 0 I 260 s dasNov3.JH570378 1267765 16 - 11655695 ----------------------------------------------tacctacctca-------gaggg--------------------------------- i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14337978 102 + 91889043 I e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634247 332 - 10520994 I e otoGar3.GL873536 1328887 0 - 29863360 C a score=779365.000000 s hg38.chr5_GL383530v1_alt 77027 84 + 101241 ctaa-ttttttatgttat-----ttttttgtagagacacggtcttgctttgttgcccaggctggtcttaagctcctgatctcaagtgatc s panTro5.chr5 20310916 84 + 181907262 ctaa-ttttttatgttat-----ttttttgtagagacacggtcttgctttgttgcccaggctggtcctaagctcctgatctcaagtgatc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323240 84 + 183735486 ctaa-ttttttatgttat-----ttttttgtagagacacggtcttgctttgttgcccaggctggtcttaagctcctgatctcaagtgatc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809912 84 - 13748885 ctaa-ttttttatgttat-----ttttttgtagagacacggtcttgctttgttgcccaggctggtcttaagctcctgatctcaagtgatc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842464 83 - 163208435 ctaa-ttttttatgtta------ttttttgtagagacagggtcttgctttgttgcccaggctggtcttaagctcctgatgtcaagtgatc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87865354 83 - 180051392 ctaa-tttttcatgtta------ttttttgtggagacagggtcttgctttgttgcccaggctggtcttaagctcctgatctcaagtgatc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87969760 83 - 181584905 ctaa-ttttttatgtta------ttttttgtggagacagggtcttgctttgttgcccaggctggtcttaagctcctgatctcaagtgatc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1197178 83 - 8785636 ctaa-ttttttatgtta------ttttttgtggagacagggtcttgctttgttgcccaggctggtcttaagctcctgatctcaagtgatc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1660839 83 + 27333823 ctaa-ttttttatgtta------ttttttgtggagacagggtcttgctttgttgcccaggctggtcttaagctcctgatctcaagtgatc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1930466 83 - 91010382 ctaa-ttttttatgtta------tttttcgtggagacagggtcttgctttgttgcccaggctggtcttaagctcctgatctcaagtgatc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2049911 83 + 5179401 ctaa-ttttttatgtta------ttttttgtggagacagggtcttactttgttgcccaggctggtcttaagctcctgatctcaagtgatc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7752673 83 - 21726897 ctaa-ttttttatgtta------ttttttgtggagacagggtcttgctttgttgcccaggctggtcttaagctcctgatctcaagtgatc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562235 88 + 204313951 ctaa-ttttttattttattttg-ttgtttgtaaagacagggtcctgctttcttgcccaggctggtcttaagttcctgatctcaagtaatc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015678 89 + 71252344 ctaatttttttattttattttg-gtttttgtagagacagggtcttgcgttcttgccctggctggtcttaagctcctgatctcaagtgatc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374792 88 - 1393929 ctaa-ttttttattttattttg-gtttttgtagagacagggtcttgctttcttgcccaggctggtcttaagctcctgatggcaagtgatc i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447226 89 - 15889662 ctaa-ttttttattttattttgtttttttgtagagacagggtcttgctttcttgcccaggctggtcttaagctcctgatctcaagtgatc i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1267781 12 - 11655695 ------------------------ttcttgtaggga------------------------------------------------------ i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14337978 102 + 91889043 I e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634247 332 - 10520994 I e mm10.chr13 76485299 260 + 120421639 I e otoGar3.GL873536 1328887 0 - 29863360 C a score=458921.000000 s hg38.chr5_GL383530v1_alt 77111 53 + 101241 tacccacctcagccttctaaagtgttgaggttacaagcgtgaagcaccacgcc s panTro5.chr5 20311000 53 + 181907262 tacccacctcagccttctaaagtgttgaggttacaagcgtgaagcaccacgcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323324 53 + 183735486 tacccacctcagccttctaaagtgttgaggttacaagcgtgaagcaccacgcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4809996 53 - 13748885 tacccacctcagccttctaaagtgttgaggttacaagcgtgaagcaccacgcc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842547 53 - 163208435 tacccacctcagcctcctaaagtgttgaggttacaagcgtgaaacaccacgcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87865437 53 - 180051392 tacccacctcagcctcctaaagtgttgagtttacaagcgtcaaacaccatgcc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87969843 53 - 181584905 tacccacctcagcctcctaaagtgttgagtttacaagcgtcaaacaccatgcc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1197261 43 - 8785636 tacccacctc----------agtgttgagtttacaagcgtcaaacaccatgcc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1660922 53 + 27333823 tacccacctcagcctcctaaagtgttgaggttacaagcatcaaacaccatgcc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1930549 53 - 91010382 tacccacctcagcctcctaaagtgttgagattacaagcatgaaacatcatgcc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2049994 53 + 5179401 tacccacctcagcctcctaaagtgttgagtttacaagcgtcaaacaccatgcc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7752756 53 - 21726897 tacccacctcagcctcttaaagtgttgaggttacaagtgtgaaacaccatgcc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562323 53 + 204313951 tccccacctcagcctcctaaagtgttgagattacaagcaggaaacaccatgcc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015767 53 + 71252344 tacccacctcagccccctaaagtgttgagattacaagcaggaaacaccatgcc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374880 53 - 1393929 tacccacctcagccccctagagtgttgagattacaagcaggaaccagcatgcc i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447315 53 - 15889662 tacccacctcagcctcctaaaatgttaagattacaagcaggaaacaccgtgcc i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1328887 11 - 29863360 tacctacctca------------------------------------------ i otoGar3.GL873536 C 0 C 0 s dasNov3.JH570378 1267793 9 - 11655695 --------------ttacaaagt------------------------------ i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14337978 102 + 91889043 I e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634247 332 - 10520994 I e mm10.chr13 76485299 260 + 120421639 I a score=1564532.000000 s hg38.chr5_GL383530v1_alt 77164 167 + 101241 tggcTTTCAGTAATgtttcttaatctttgttcctcagtttc-----ctcaggcataa-aatagttcttactttatagggggttcttgtaggaattaca-taagttaaaa-------tatTATTATCTTGAAATACAA--AAGAAAAGTGATAAATTTTATCTACCTGTCACCACTCCTGTGAT s panTro5.chr5 20311053 167 + 181907262 tggcTTTCAGTAATgtttcttaatctttgttcctcagtttc-----ctcaggcataa-aatagttcttactttatagggggttcttgtaggaattaca-taagttaaaa-------tatTATTATCTTGAAATACAA--AAGAAAAGTGATAAATTTTATCTACCTGTCACCACTCCTGTGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323377 167 + 183735486 tggcTTTCAGTAATgtttcttaatctttgttcctcagtttc-----ctcaggcataa-aatagttcttactttatagggggttcttgtaggaattaca-taagttaaaa-------tatTATTATCTTGAAATACAA--AAGAAAAGTGATAAATTTTATCTACCTGTCACCACTCCTGTGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4810049 166 - 13748885 tggcTTTCAGTAATgtttcttaatctttgttcctcagtttc-----ctcaggcataa-aatagttcttactttaca-ggggttcttgtaggaattaca-taagttaaaa-------tatTATTATCTTGAAATACAA--AAGAAAAGTGATAAATTTTATCTACCTGTCACCACTCCTATGAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842600 165 - 163208435 tggcTTTCAGTAATgtttcttaatctttgttcct--gtttc-----ctcaggcataa-aatagttcttactttacagggggttcttgtaggaattaca-taagttaaaa-------tatTATTATCTTGAAATACAA--AAGAAAAGTGATAAATTTTATCTACCTGTCACCACTGCTATGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87865490 162 - 180051392 tggctttcagtaatgtttcttaatctttgttcctcagtctc-----ctcaggcataa-aacagttcttacctcacagggggttcttgtaggaattaca-taagttaaaa-------tatTATTATCTTGAAAT-------AAAAAAGTGATAAATTTTATCTACCTATCACCACTCCTATGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87969896 162 - 181584905 tggctttcagtaatgtttcttaatctttgttcctcagtctc-----ctcaggcataa-aacagttcttacctcacagggggttcttgtaggaattaca-taagttaaaa-------tatTATTATCTTGAAAT-------AAAAAAGTGATAAATTTTATCTACCTATCACCACTCCTATGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1197304 159 - 8785636 tggcTTTCAGTAATgtttcttaatctttgttcctcagtctc-----ctcaggcataa-aacagttcttacctcacagggggttcttgtaggaattaca-taagttaaaa----------tatTATCTTGAAAT-------AAAAAAGTGATAAATTTTATCTACCTATCACCACTCCTATGAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1660975 162 + 27333823 tggctttcagtaatgtttcttaatctttgttcctcagtttc-----ctcaggcataa-aacagttcttacctcacagggggttcttgtaggaattaca-taagttaaaa-------tatTATTATCTTGAAAT-------TAAAAAGTGATAAATTTTATCTACCTATCACCACTCCTATGAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1930602 162 - 91010382 tgactttcagtaatgtttcttaatctttgttcctcagtttc-----ctcaggcataa-aacagttcttacctcccagggggttcttgtaggaattaca-taagttaaaa-------tatTATTATCTTGAAAT-------AAAAAAGTGATAAATTTTATCTACCTATCACCACTCTTATGAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2050047 162 + 5179401 tggctttcagtaatgtttcttaatctttgttcctcagtttc-----ctcaggcataa-aacagttcttacctcactgagggttcttgtaggaattaca-taagttaaaa-------tatTATTATCTTGAAAT-------AAAAAAGTGATAAATTTTATCTACCTATCACCACTCCTATGAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7752809 162 - 21726897 tggctttcagtaatatttcttaatctttgttcctcagtttc-----ctcaggcataa-aatagttcttacctcacagggggttcttgtaggaattaca-taagttaaaa-------tatTATTATCTTGAAAT-------AAAAAAGTGATAAATTTTATCTACCTATCACCATTCCTATGAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562376 167 + 204313951 tggctttcagtgatattttttcatctctgttccttagtttc-----ctcaggcataa-aatagtatgtacctcacagggcgttcttgtaggaattaca-taagttaaaa-------tatTATTATCTTGAAATAAAA--AAGAAAAGTGTTAAATTTTATCTACCTATCACCACTTCTGTGAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015820 167 + 71252344 tggctttcagtaatatttcttcatctttgttccttagttcc-----ctcaggcgtaa-aatagtatgtacctcacagggggttcttgtaggaattaca-taagttaaaa-------tatTATAATCTTGAAATAAAA--AAGAAAAGTGATCAATTTTATCTACCTATCACCACTTCTATGAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 374933 162 - 1393929 tggctttcagtaatatttcttcatctttgttccttagtttc-----ctcaggcataa-aatagtacgtacctcacagggggttcttgtaggaattaca-taagttaaaa-------tatTATTATCTTGAAATAA-------AAAAGTGATAAATTTTATCTACCTATCACTACTTCTATGAC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447368 166 - 15889662 tggctttcagtaatatttcttcatctttgttccttagtttc-----ctcaggcataa-aatagtacgtacctcac-gggggttcttgtaggaattaca-taagttaaAA-------TACTATTATCTTGAAATAAAA--AAGAAAAGTCATAAATTTTATCTACCTATCACCACTTCTATGAC i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1328898 97 - 29863360 ------------------------------------------------caggga----------------------gggagttcttacagggattatg-taagttaaAATCTATCTTATTATTATCCTGAAGTAAAA--AAGGGAAATGATAAATTCTGTCCACCT------ACTC------- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14338080 161 + 91889043 ttatcttgaccaatgtttcttaatctccattccatagtttccattacatgaacatgataatagtgcttccctcattggg---ctctaaaaggattacattaagttaaAGTCTATCTTATTATCATCCTGAACCAAGA---AACTAGGTGATAAATTCTGCTTACCAT---------------- i canFam3.chr3 I 102 C 0 s dasNov3.JH570378 1267802 69 - 11655695 --------------------------------------------------------------------------------------------------------taaAATCCATCCTATTATGATCTTGAACTAAAATAGAAACAAATGATAAATT----CTTCTTACTATCACTCC------ i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634247 332 - 10520994 I e mm10.chr13 76485299 260 + 120421639 I a score=132437.000000 s hg38.chr5_GL383530v1_alt 77331 13 + 101241 ATCCATATGTATA s panTro5.chr5 20311220 13 + 181907262 ATCCATATGCATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323544 13 + 183735486 ATCCATATGCATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4810215 13 - 13748885 ATCCATATGCATA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842765 13 - 163208435 ATCCATATACATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87865652 13 - 180051392 ATCCATATGCATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87970058 13 - 181584905 ATCCATATGCATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1197463 13 - 8785636 ATCCATATGCATA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1661137 13 + 27333823 ATCCATATGCATA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1930764 13 - 91010382 ATCTATATGCATA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2050209 13 + 5179401 ATCCATATGCATA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7752971 13 - 21726897 ATCCATATGCATA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562543 13 + 204313951 ATGCATATGCATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45015987 13 + 71252344 ATGCATATGCATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 375095 13 - 1393929 ATGCATATGCATA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447534 13 - 15889662 ATGAGTATGCATA i aotNan1.NW_018506370v1 C 0 C 0 s mm10.chr13 76485559 13 + 120421639 ATTTATCTGTGTg i mm10.chr13 I 260 C 0 s canFam3.chr3 14338241 9 + 91889043 ATTCATATG---- i canFam3.chr3 C 0 C 0 e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634247 332 - 10520994 I e dasNov3.JH570378 1267871 0 - 11655695 C e otoGar3.GL873536 1328995 0 - 29863360 C a score=1184316.000000 s hg38.chr5_GL383530v1_alt 77344 104 + 101241 TTACTCTTAT-GCATCTGGACTTTGACTGATAAAAGAC-------TTTTTTTGCTACTATT----------------------ATGTACCTTAATCTT-----------------------GCCTTTAT-TCTCTACTTGTA---TGCTCCTTGTATGTTT s panTro5.chr5 20311233 104 + 181907262 TTACTCTTAT-GCATCTGGACTTTGACTGATAAAAAAC-------TTTTTTTGCTACTATT----------------------ATGTACCTTAATCTT-----------------------GCCTTTAT-TCTCTACTTGTA---TGCTCCTTGTATGTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323557 104 + 183735486 TTACTCTTAT-GCATCTGGACTTTGACTGATAAAAGAC-------TTTTTTTGCTACTATT----------------------ATGTACCTTAATCTT-----------------------GCCTTTAT-TCTCTACTTGTA---TGCTCCTTGTATGTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4810228 105 - 13748885 TTACTCTTAT-GCATCTGGACTTTGACTGATAAAAGAT------ATTTTTTTGCTACTATT----------------------ATGTACATTAATCTT-----------------------GCCTTTAT-TCTCTACTTGTA---TGCTCCTTGTATGTTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842778 105 - 163208435 TTACTCTTAT-GCATCTGGACTTTGACTGATAAAAGAC------ATTTTTTTGCTACTGTT----------------------ATGTACATTAATCTT-----------------------GCCTTTAT-TCTCTACTTATA---TGTTCCTTGTATGTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87865665 102 - 180051392 TTATTCTTAT-GCATCTGGACTT----TGATAAAAGAC-----TTTTTTTTTGCTACTATT----------------------ATGTATATTAATCTT-----------------------GCCTTTAT-TCTCTACATGTA---TGCACCTTGTATGTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87970071 102 - 181584905 TTATTCTTAT-GCATCTGGACTT----TGATAAAAGAC-----TTTTTTTTTGCTACTATT----------------------ATGTATATTAATCTT-----------------------GCCTTTAT-TCTCTACATGTA---TGCACCTTGTATGTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1197476 102 - 8785636 TTATTCTTAT-GCATCTGGACTT----TGATAAAAGAC-----TTTTTTTTTGCTACTATT----------------------ATGTATATTAATCTT-----------------------GCCTTTAT-TCTCTACATGTA---TGCACCTTGTATGTTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1661150 105 + 27333823 TTATTCTTAT-GCATCTGGACTT----TGATAAAAGCCT--TTTTTTTTTTTGCTACTATT----------------------ATGTACATTAATCTT-----------------------GCCTTTAT-TCTCTACTTGTA---TGCACCTTGTATGTTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1930777 104 - 91010382 TTATTCTTAT-GCATCTGGACTT----TGATAAAAGAC---TTTTTTTTTTTGCTACTATT----------------------CTGTACATTAATCTT-----------------------GCCTTTAT-TCTCTACTTGTA---TGCACCTTGTATGTTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2050222 103 + 5179401 TTATTCTTAT-GCATCTGGACTT----TGATAAAAGAC----TTTTTTTTTTGCTACTATT----------------------ATGTATATTAATCTT-----------------------GCCTTTAT-TCTCTACATGTA---TGCACCTTGTATGTTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7752984 101 - 21726897 TTATTCTTAT-GCATCTGGACTT----TGATAAAAGAC------TTTTTTTTGCTACTATT----------------------ATGTACATTAATCTT-----------------------GCTTTTAT-TCTCTACTTGTA---TGCACCTTGTATGTTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562556 105 + 204313951 TTACTCTTAT-GCATCTGGGCTTTGACTGATAAAAGAC----AA--TTTTTTGCTACTATT----------------------ATGTACATTAATCTT-----------------------GCCTTTAT-TCTCTACTTATA---TGCTCCTTGTATGTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45016000 107 + 71252344 TTACTCTTAT-GTATCTGGGCTTTGACTGATAAAAGAT----AATTTTTTTTGCTACTATT----------------------ATGTACATTAATCTT-----------------------GCCTTTAT-TCTCTACTTATA---TGCTCCTTGTATGTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 375108 107 - 1393929 TTACTCTTAT-GCATCTGGGCTTTGACTGATAAAAGAC----AATTTTTTTTGCTACTATT----------------------ATGTACATTAATCTT-----------------------GCCTTTAT-TCTCTACTTATA---TGCTCCTTGTATGTTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447547 106 - 15889662 TTACTCTTAT-GCATCTGGGCTTTGACTGATAAAAGAC----AATTTTTTTT-CTACTATT----------------------ATGTATATTAATCTT-----------------------GCCTTTAT-TCTCTACTTATA---TGCTCCTTGTATGTTT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 634579 108 - 10520994 TTACTCCTAT-GCATCTGGGCTTTGACTGTTGAAAGAC---AAAATTTTTTTCTTGTTGTT----------------------ATGTACATTAATCAT-----------------------ACCTTTAT-TCTCTACCTATA---TGTTCCCGGTATGTTT i proCoq1.NW_012147189v1 I 332 I 12 s otoGar3.GL873536 1328995 102 - 29863360 TTACGCCTAT-GCATCTGGGCTTTCA------GAAAAG---ACATTTTTTTTCTTACTGTT----------------------ATATACATTAATCGT-----------------------TCCTTTAT-TCACTACTTGTG---TGTGCCTCTTATGTTT i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76485572 153 + 120421639 atagtgttagagcccctggaattggaattacagacaat-------tgtggttgctgggatttgaactcagttcctctggaagaatagtcagtgctcttaaccactgagccatctctttccagcccTCATGTTTTTAATTTTAATCTGCTCATTGTGTGTG- i mm10.chr13 C 0 C 0 s canFam3.chr3 14338250 94 + 91889043 ------------------AGCTTGAACTGATGAAAGACTAAATTTTTTTTTCCCTGAAGTT----------------------ATGCACATTTATCAT-----------------------GTCTTTAT-TCTCTGTCTGTA---TTCTCCTAGAATGTTT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1267871 91 - 11655695 --------AT-GCATC--AGCTTTGAGTGATAAAAGAC--------TAAATTCTTATCATT----------------------AGGCACATTTATCAT-----------------------ATCTTT---GCTGTACTTGTG---TGCTCTTTGCATATTT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84844529 439 + 108143057 I a score=235165.000000 s hg38.chr5_GL383530v1_alt 77448 19 + 101241 GCCCATGTTAATGGTTCGT s panTro5.chr5 20311337 19 + 181907262 GCCCATGTTAATGGTTTGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323661 19 + 183735486 GCCCATGTTAATGGTTTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4810333 19 - 13748885 GCCCATGTTAATGGTTTGT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842883 19 - 163208435 GCCCATGTTTATGGTTTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87865767 19 - 180051392 GTCCATGTTAATGGTTTGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87970173 19 - 181584905 GTCCATGTTAATGGTTTGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1197578 19 - 8785636 GTCCATGTTAATGGTTTGT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1661255 19 + 27333823 GTCCATGTTAATGGTTTGT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1930881 19 - 91010382 GTCCATGTTAATGGTTTGT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2050325 19 + 5179401 GTCCATGTTAATGGTTTGT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7753085 19 - 21726897 GTCCATGTTAATGGTTTGT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562661 19 + 204313951 GCCCATGTTAATGGTTTGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45016107 19 + 71252344 GTCCATATTAATGGCTTGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 375215 19 - 1393929 GTCCATGTTTATGCTTTGT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447653 19 - 15889662 GTCCATATTAATGGTTTGT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1329097 12 - 29863360 TTCCATGTTTAT------- i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76485725 19 + 120421639 GTCTAAATCAATGGTTCAT i mm10.chr13 C 0 C 0 s canFam3.chr3 14338344 19 + 91889043 GTCCATGTTAATGTCTTTA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1267962 19 - 11655695 ATCCATCTTATTAGTTTAT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84844529 439 + 108143057 I e proCoq1.NW_012147189v1 634687 12 - 10520994 I a score=1773960.000000 s hg38.chr5_GL383530v1_alt 77467 121 + 101241 AGTTTATCCCAGAGAACAGTGCTCCATACAAATGTTGCCTAA---TAAAAGCTTTTCAGTGAGCTTGATGACAAAG-----------------------GACATTATCTTAGCTTTGCACAGCCTGAAAAATATTTAAATTCTGTAT- s panTro5.chr5 20311356 121 + 181907262 AGTTTATCCCAGAGAACAGTGCTCCATACAAATGTTGCCTAA---TAAAAGCTTTTCAGTGAGCTTGATGACAAAG-----------------------GACATTATCTTAGCTTTGCACAGCCTTAAAAATATTTAAATTCTGTAT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323680 121 + 183735486 AGTTTATCCCAGAGAACAGTGCTCCATACAAATGTTGCCTAA---TAAAAGCTTTTCAGTGAGCTTGATGACAAAG-----------------------GACATTATCTTAGCTTTGCACAGCCTTAAAAATATTTAAATTCTGTAT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4810352 121 - 13748885 AGTTTATCCCAGAGAACAGTGCTCCATACAAATGTTACCTAA---TAAAAGCTTTTCAGTGAGCTTGATGACAAAG-----------------------GACATTATCTTAGCTTTGCACAGCCTTAAAAATATTTAAATTCTGTAT- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53842902 121 - 163208435 ATTTTATCCCAGAGAACAGTGCTCCGTACAAATGTTACCTAA---TAAAAGCTTTTCAGTGAGCTTGATGACAGAG-----------------------GACATTATCTTAGCTTTGCACAGCCTTCAAAATATTTAAATTCTGTAT- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87865786 121 - 180051392 AATTTATCCCAGAGAACAGTGCTGTATACAAATATTACCTAA---TAAAAGCTTTTCAGTGAGCTTGATGACAAAT-----------------------GACATTATCTTAGCTTTGCACAGCCTTCAAAAAATTTAAATTCTGTAT- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87970192 121 - 181584905 AATTTATCCCAGAGAACAGTGCTGTATACAAATATTACCTAA---TAAAAGCTTTTCAGTGAGCTTGATGACAAAT-----------------------GACATTATCTTAGCTTTGCACAGCCTTCAAAAAATTTAAATTCTGTAT- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1197597 121 - 8785636 AATTTATCCCAGAGAACAGTGCTGTATACAAATATTACCTAA---TAAAAGCTTTTCAGTGAGCTTGATGACAAAT-----------------------GACATTATCTTAGCTTTGCACAGCCTTCAAAAAATTTAAATTCTGTAT- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1661274 121 + 27333823 AGTTTATCCCAGAGAACAGTGCTGTATACAAATATTACCTAA---TAAAAGCTTTTCAGTGAGCTTGATGACAAAT-----------------------GACATTATCTTAGCTTTGCACAGCCTTCAAAAAATTTAAATTCTGTAT- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1930900 121 - 91010382 AGTTTGTCCCAGAGAACAGTGCTGTATACAAATGTTACCTAA---TAAAAGCTTTTCAGTGAGCTTGATGACAAAT-----------------------GACATTATCTTAGCTTTGTACAGCCTTCAAAAAATTTAAATTATGTAT- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2050344 121 + 5179401 AATTTATCCCAGAGAACAGTGCTGTATACAAATATTACCTAA---TAAAAGCTTTTCAGTGAGCTTGATGACAAAT-----------------------GACATTATCTTAGCTTTGCACAGCCTTCAAAAAATTTAAATTCTGTAT- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7753104 121 - 21726897 AGTTTATCCCAGAGAACAGCGCTGTATACAAATGTTACCTAA---TGAAAGCTTTTCAGTGAGCTTGATGACAAAT-----------------------GACATTATCCTAGCTTTGCACAGCCTTCAAAATATTTAAATTCTGTAT- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562680 121 + 204313951 AGTTTATCCCAGGGAACAGCACACCATACAAATGTTACCTAA---TAAAAGCTTTTTGGTGAGCTTGATGACAAAG-----------------------GATATTATCTTTGCTTTGCACAGCCTTCAAAATGTTTAAAAGCTGTAT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45016126 121 + 71252344 AGTTTATCCCAGAGAACAGTACACCATACAAACGTTACCTAA---TAAAAGCTTTTCGGTGAGCTTGTTGACAAAG-----------------------GACATTATCTTAGCCTTGCACAGCCTTCAAAATGTTTAAATGCTGTAT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 375234 103 - 1393929 ---------------ACAGTGCACCATACAAATGTTACCTAA---TAAAAGCTTTTCAGTAAGCTTGATGACAAAG-----------------------GACATTA---TAGCTTTGCACAGCCTTCAAAATGTTTAAATGCTGTAT- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447672 121 - 15889662 AGTTTATCCCAGAGAACAGTGCACCATACAAATGTTACCTAA---TAAAAGCTTTTCAGTGAGCTTGATGACAAAG-----------------------GACATTATCTTAGCTTTGCACAGCCCTCAAAATATTTAAATGCTGTAT- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84844968 121 + 108143057 AGTTTATTCTAGAGAACAGTGCTCCATCCAAATGTTATCCAA---TAAAAACTTTTCAGTGAGCTTGATAATAAAG-----------------------GGCATTGTCTTAAGTTTTTAAAGCCTTCAAAATATTTAAATTCTATAt- i micMur3.chr12 I 439 I 1110 s proCoq1.NW_012147189v1 634699 121 - 10520994 AGTTTATCCTAGAGAACAGTGCTTCATCCAAATGTTACCCAG---TAAAAACCTTTCAGTGAGCTTGATAATAAAG-----------------------GGCATTGTCTTAAGTTTTTAAAGCCTTCAAAATATTTAAATTCTATAt- i proCoq1.NW_012147189v1 I 12 I 1793 s otoGar3.GL873536 1329109 121 - 29863360 AGTTTCTCACAGAGAACAATGTTCCACACAAATTTTACCTAA---TAAAAGATTTTGAGTGAGCTCGATAATAAAG-----------------------GGCATTGTCTTTGGTTTTTGAAACCTTTAAAATATTTAAATTGTATGT- i otoGar3.GL873536 C 0 I 1 s mm10.chr13 76485744 108 + 120421639 AAGGAATACCAGAGCAAAACACTCCACCCAGGTGTTACCTAATATTAAAAGGCTTTCAGTGAGCTTGCTGATAAAG-----------------------GG------------GTTGTATAGCCATCAGAA----TAAATTCATTTT- i mm10.chr13 C 0 I 1 s canFam3.chr3 14338363 111 + 91889043 AGTTTATCTTAGAGCACAGCGCTCCATGCAAATATTACTTAA---TAAAAGGTTTTCAGTGAACTTGATAAA---------------------------------GTGTTGGGTTTACAAAGCTTTCAAaatatttaaattctagag- i canFam3.chr3 C 0 I 1 s dasNov3.JH570378 1267981 139 - 11655695 AGTTTGTCTCTCAGGACAGTGTTCCATGCAGATGTTGT-------TAAAAGTTTTGCAGT-AGCCTGATGTTATTTTCTTGGGGTTTCAGGCATTTTCAGACATTTTCTTGGG-TTGCAAAACCCTCAAAATATTTAAATTCTATACT i dasNov3.JH570378 C 0 C 0 a score=759338.000000 s hg38.chr5_GL383530v1_alt 77588 61 + 101241 CTTAATCAGGCTGTTTTAACT------CTATTTGTATATTTAGTCCATTTGTTAACCTCATCCTGTA s panTro5.chr5 20311477 61 + 181907262 CTTAATCAGGCTGTTTTAACT------CTATTTGTATATTTAGTCCATTTGTTAACCTCATCCCATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323801 61 + 183735486 CTTAATCAGGCTGTTTTAACT------CTATTTGTATATTTAGTCCATTTGTTAACCTCATCCCATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4810473 61 - 13748885 CTTAATCAGGCTGTTTTAACT------CCATTTGTATATTTAGTCCATTTGTTAACCTCATCCCATA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53843023 61 - 163208435 CTTAATCAGGCTGTTTTAACT------CTATTTGTATAGTTAGTCCATTTGTTAACCTCATCCCATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87865907 61 - 180051392 CTTAGTCAGGCTGTTTTAACT------CTATTTGTTTATTTAGTTCATTTGTTAACCTCATCCCATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87970313 61 - 181584905 CTTAGTCAGGCTGTTTTAACT------CTATTTGTTTATTTAGTTCATTTGTTAACCTCATCCCATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1197718 61 - 8785636 CTTAGTCAGGCTGTTTTAACT------CTATTTGTTTATTTAGTTCATTTGTTAACCTCATCCCATG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1661395 61 + 27333823 CTTAGTCAGGCTGTTTTAACT------CTATTTGTTTATTTAGTTCATTTGTTAACCTCATCCCATG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1931021 61 - 91010382 CTTAGTCAGGCTGTTTTAACT------CTATTTGTTTATTTAGTTCATTTGTTAACCTCATCCCATG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2050465 61 + 5179401 CTTAGTCAGGCTGTTTTAACT------CTATTTGTTTATTTAGTTCATTTGTTAACCTCATCCCATG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7753225 61 - 21726897 CTTAGTCAGGCTGTTTTAACT------CTATTTGTTTATTTAGTTCATTTGTTAACCTCATCCCATG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562801 61 + 204313951 CTTAATCAGGCTGTTTTAACT------TTATTTGTATatttagtctatttgttaacctcatcccatg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45016247 61 + 71252344 CTTAATCAGgctgttttaact------ttattcatgtatttagtctatttgttaacctcatcccatg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 375337 61 - 1393929 CTTGATCAGGCTGTTTTAACT------TTATTTGTATATTTAGTCTATTTGTTAAACTCATCCCATG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447793 61 - 15889662 CTTAATCAGGCTGTTTTAACT------TTATTTGTATatttagtctatttgttaacctcatcccatg i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1329231 61 - 29863360 CTTAATCATCTTACTTTAACT------CCATTTGTGTATTTGTTCTATTTGTTAACTTTGTTCCATG i otoGar3.GL873536 I 1 C 0 s mm10.chr13 76485853 51 + 120421639 CTTAATCACA----------T------TCGCTTTCCTGTTTGATCTGTCTGTTGGGTTCATGTCAAG i mm10.chr13 I 1 C 0 s canFam3.chr3 14338475 67 + 91889043 cttaatcagcctgatataactgtgtaactgtgtatgtatttgatctctttgtgaacttcatcctctg i canFam3.chr3 I 1 C 0 s dasNov3.JH570378 1268120 44 - 11655695 CTTCACCAGCCTGATTTAACT------CTA-----------------GTTGTTAACTTCACCCCATG i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84845089 1110 + 108143057 I e proCoq1.NW_012147189v1 634820 1793 - 10520994 I a score=4895685.000000 s hg38.chr5_GL383530v1_alt 77649 368 + 101241 CTTTTTAATGTGATTATAATCTGTTTTCTCAGAATGAtgaagcttgaatgagataatctataaatgaaagtatgttgtaaatagaaaagtgccatgcaaatataaAA---TATATTAGTAATAAATAACCTTATGGAGTCACAAA----------ACAGTGTGTTATCTTTGGGTG-AAAATAAGGCAGCTGTGATTTGA--TTCATGCAGTAG-AAAAAGCCTTGAAGTAGATGTA--AAGTATATGAGAGGTT-TGCTTCTAAG---TGAATTGATGACTATGATTACTTATTTGCT---------------------------TTTAAATCTCTTTAGATGTTTATTAAACTT--CTATCATGCTCCAAAATTAGTTTTTAAAAAT-TACTCAGTTTATTAAAACATAATTTTGTTGC s panTro5.chr5 20311538 368 + 181907262 CTTTTTAATGTGATTATAATCTGTTTTCTCAGAATGAtgaagcttgaatgagataatctataaatgaaagtatgttgtaaatagaaaagtgccatgcaaatataaAA---TATATTAGTAATAAATAACCTTATGGAGTCACAAA----------ACAGTGTGTTATCTTTGGGTG-AAAATAAGGCAGCTGTGATTTGA--TTCATGCAGTAG-AAAAAGCCTTGAAGTAGATGTA--AAGTATATGAGAGGTT-TGCTTCTAAG---TGAATTGATGACTATGATTACTTATTTGCT---------------------------TTTAAATCTCTTTAGATGTTTATTAAACTT--CTATCATGCTCCAAAATTAGTTTTTAAAAAT-TACTCAGTTTATTAAAACATAATTTTGTTGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20323862 368 + 183735486 CTTTTTAATGTGATTATAATCTGTTTTCTCAGAATGAtgaagcttgaatgagataatctataaatgaaagtatgttgtaaatagaaaagtgccatgcaaatataaAA---TATATTAGTAATAAATAACCTTATGGAGTCACAAA----------ACAGTGTGTTATCTTTGGGTG-AAAATAAGGCAGCTGTGATTTGA--TTCATGCAGTAG-AAAAAGCCTTGAAGTAGATGTA--AAGTATATGAGAGGTT-TGCTTCTAAG---TGGATTGATGACTATGATTACTTATTTGCT---------------------------TTTAAATCTCTTTAGATGTTTATTAAACTT--CTATCATGCTCCAAAATTAGTTTTTAAAAAT-TACTCAGTTTATTAAAACATAATTTTGTTGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4810534 368 - 13748885 CTTTTTAATGTGATTATAATCTGTTTTCTCAGAATGAtgaagcttgaatgagataatctataaatgaaagtatgttgtaaatagaaaagtgccatgcaaatataaAA---TATATTAGTAATAAATAACCTTGTGGAGTCACAAA----------ACAGTGTGTTATCTTTGGGTG-AAAATAAGGCAGCTGTGATTTGA--TTCATGCAGTAG-AAAAAGCCTTGAAGTAGATGTA--AAGTATATGAGAGGTT-TGCTTCTAAG---TGAATTGATGACTGTGATTACTTATTTGCT---------------------------TTTAAATCTCTTTACATGTTTATTAAACTT--CTATCATGCTTCAAAATTAGTTTTTAAAAAT-TATTCAGTTTATTAAAACATAATTTTGTTGC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53843084 368 - 163208435 CTTTTTAATGTGATTATAATCTGTTTTCTCAGAATGAtgaagcttgaatgagataatctataaatgaaagtatgttgtaaatagaaaagtgccatgcaaatataaAA---TATGTTAGTAATAAGTAACCTTATGGAGTCACAAA----------ACAGTGTGTTATCGTTGGGTG-AAAATAAGGCAGCTGTGATTTGA--TTCATGCAGTAG-AAAAAGCCTTGAAGTAGATGTA--AAGTATATGAGAGGTT-TGCTTCTAAG---TTAATTGATGACTATGATTACTTATTTGCT---------------------------TTTAAATCTCTTTAGATGTTTACTAAACTT--CTATCATGCTTCCAAATTACTTTTTAAAAAT-TATTCAGTTTATTAAAGCATAATTTTGTTGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87865968 364 - 180051392 CTTTTTAATGTGATTATAATCTGTTTTCTCAGAATGAtgaagcttgaatgagataatctataaatgaaagtgtgttgtaaatacaaaagtgccatgcaaatataaAA---TATATTAGTAATAAATAACCTTACAGAGTCACAAG----------ACAGTGTGTTATCTTTGGGTG-AAAATAAGGCAGCTGTAATTTGA--TTCGTGCAGTAG-AAAAAGCCTTGAAGTGGATGTA--AAGTATATGAGAGGTT-TGCTTCTAAT-------TTGATGACTAAAATTACTTATTTGCT---------------------------TTCAAATCTCTTTAGATGTTTATTAAACTT--CTATCGTGCTTCAAAATTATTTTTTAAAAAT-TATTCAGTTTATTAAAGCATAATTTTGTTGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87970374 364 - 181584905 CTTTTTAATGTGATTATAATCTGTTTTCTCAGAATGAtgaagcttgaatgagataatctataaatgaaagtgtgttgtaaatacaaaagtgccatgcaaatataaAA---TATATTAGTAATAAATAACCTTACAGAGTCACAAG----------ACAGTGTGTTATCTTTGGGTG-AAAATAAGGCAGCTGTAATTTGA--TTCGTGCAGTAG-AAAAAGCCTTGAAGTGGATGTA--AAGTATATGAGAGGTT-TGCTTCTAAT-------TTGATGACTAAAATTACTTATTTGCT---------------------------TTCAAATCTCTTTAGATGTTTATTAAACTT--CTATCGTGCTTCAAAATTATTTTTTAAAAAT-TATTCAGTTTATTAAAGCAAAATTTTGTTGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1197779 364 - 8785636 CTTTTTAATGTGATTATAATCTGTTTTCTCAGAATGAtgaagcttgaatgagataatctataaatgaaagtgtgttgtaaatacaaaagtgccatgcaaatataaAA---TATATTAGTAATAAATAACCTTACAGAGTCACAAG----------ACAGTGTGTTATCTTTGGGTG-AAAATAAGGCAGCTGTAATTTGA--TTCGTGCAGTAG-AAAAAGCCTTGAAGTGGATGTA--AAGTATATGAGAGGTT-TGCTTCTAAT-------TTGATGACTAAAATTACTTATTTGCT---------------------------TTCAAATCTCTTTAGATGTTTATTAAACTT--CTATCGTGCTTCAAAATTATTTTTTAAAAAT-TATTCAGTTTATTAAAGCATAATTTTGTTGC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1661456 364 + 27333823 CTTTTTAATGTGATTATAATCTGTTTTCTCAGAATGAtgaagcttgaatgagataatctataaatgaaagtgtgttataaatacaaaagtgccatgcaaatataaAA---TATATTAGTAATAAATAACCTTACAGAGTCACAAG----------ACAGTGTGTTATCTTTGGGTG-AAAATAAGGCAGCTGTGATTTGA--TTCATGCAGTAG-AAAAAGCCTTGAAGTGAATGTA--AAGTATATGAGAGGTT-TGCTTCTAAT-------TTGATGACTAAAATTACTTATTTGCT---------------------------TTCAAATCTCTTTAGATGTTTATTAAATTT--CTATCGTGCTTCAAAATTATTTTTAAAAAAG-TATTCAGTTTATTAAAGCATAATTTTGTTGC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1931082 364 - 91010382 CTTTTTAATGTGATTATAATCTGTTTTCTCAGAATGAtgaagcttgaatgagataatctataaatgaaagtgtgttgtaaatacaaaagtgccatgcaaatataaAA---TATATTAGTAATAAATAACCTTACAGAGTCACAAA----------ACAGTGCGTTATCTTTGGGTG-AAAATAAGGCAGCTGTGATTCGA--TTCGTGCAGTAG-AAAAAGCCTTGAAGTGTATTTA--AAGTATATGAGAGGTT-TGCTTCTAAT-------TTGATAACTACAATTACTTATTTGCT---------------------------TTCAAATCTCTTTAGATGTTTATTAAACTT--CTATCGTGCTTCAAAATTATTTTTAAAAAAT-TATTCAGTTTATTAAAGCATAATTTTGTTGC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2050526 374 + 5179401 CTTTTTAATGTGATTATAATCTGTTTTCTCAGAATGAtgaagcttgaatgagataatctataaatgaaagtgtgttgtaaatacaaaagtgccatgcaaatataaAA---TATATTAGTAATAAATAACCTTACGGAGTCACAAGACAGTGTGTTACAGTGTGTTATCTTTGGGTG-AAAATAAGGCAGCTGTGATTTGA--TTCGTGCAGTAG-AAAAAGCCTTGAAGTGGATGTA--AAGTATATGAGAGGTT-TGCTTCTAAT-------TTGATGACTAAAATTACTTATTTGCT---------------------------TTCAAATCTCTTTAGATGTTTATTAAACTT--CTATCGTGCTTCAAAATTATTTTTTAAAAAT-TATTCAGTTTATTAAAGCATAATTTTGTTGC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7753286 363 - 21726897 CTTTTTAATGTGATTATAATCTGTTTTCTCAGAATGAtgaagcttgaatgagataatctataaattaaagtgtgttataaatagaaaagtgccatgcaaatataaAA---TATATTAGTAATAAATAATCTTACAGAGTCACAAA----------ACAGTGTGTTATCTTTGGATG-AAAATAAGGCAGCTGTGATTCGA--TTCGTGCAGTAG-AAAAAGCCTTGAAGTGGATGTA--AAGTATATGAGAGGTT-TGCTTCTAAT-------TTGATGACTACAATTACTTATTTGCT---------------------------TTC-AGTCTCTTTAGATGTTTATTAAACTT--TTATCGTGCTTCAAAATTATTTTTTAAAAAT-TATTCAGTTTATTAAAGCATAATTTTGTTGC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112562862 360 + 204313951 ctttttaatgtgaatataatctgttttctcagaatgatgaagcttgaatgagataatctacaaatgaaagtgtgttgtaaacagaaaaatgcaatgcaaatataaAA---TATATTAGTAATAAATAACCTTATGGATTCACAAA----------ATAGTGTGCTATCTTTGGGTG-AAAATAAGGCAGCTGTGATTCGA--TTCATGCAGTAG-AAAAAGCCTTGAAGTGGATGTA--AAGTATATGAGAGGTT-TGCTTCTAA--------TTGATGAGTATGATTACTTACTTGCT---------------------------TTTAAATTTCTTTAAATGTTTATTAAA-----CTATCATGCTTCAAAATGATTTTTTTAAAAT-TATTCAGTTTACTAAAGCATAATTTTGTTGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45016308 364 + 71252344 ctttttaatgtgaatataatctgttttctcagaataatgaagcttgaatgaaataatctataaatgaaagtgtgttgtaaacagaaatatgccatgcaaatataaAA---TATATTAGTAATAAATAACCTTATGGATTCACAAA----------ATTGTATGTTATCTTTGGGTA-AAAGTAAGGCAGCTGCGATTCGA--TTCATACAGTAGAAAAAAGCCTTGAAGTGGATGTA--AATTATATGAGAGGTT-TGCTTCTAA--------TTGATGACTATGATTACTTATTTGCT---------------------------TCTAATTCTCTTTAGATGTTTATTAAACTT--CTATCATGCTTCAAAATGATTTTTAAAAAAT-TATTCAGTTTACTAAAGCATAATTTTGTTGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 375398 362 - 1393929 CTTTTCAATGTGAATGTAATCTGTTTTCTCAGAATGAtgaagcttgaatgagataatctataaatgaaagtgtgttgtaaacagaaaaatgccatgcaaatataaAA---TATATTAGTAATAAATAACCTTATGGATTCACAAA----------ATAGTGTGTTATCTTTGGGTG-AAAATAAGGCAGCTGTGATTCGA--TTCATGCAGTAG-AAAAAG-CTTGAAGTGGATGTA--AACTATATGAGAGGTT-TGTTTCTAA--------TTGATGACTATGATTACTTATTTGCT---------------------------TTTAAATCTCTTTAGATGTTTATTAAACTT--CTATCATGCTTCAAAATGATTTTTTAAAAAT-TATTCAGTTTACTAAGGCATAATTTTGTTGC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1447854 363 - 15889662 ctttttaatgtgaatataatctgctttctcagaatgatgaagcttgaatgagataatctgtaaattaaagtgtgttgtaaacagaaaaatgccacacaaatataaAA---TATATTAGTAATAAATAACCTTATGGATTCACAAA----------ATAGTGTGTTATCTTTGGGTG-AAAATAAGGCAGCTGTGATTTGA--TTCATGCAGTAG-AAAAAGCCTTGAAGTGGATGTA--AAGTATATGAGAGGTT-TGCTTCTAA--------TTGATGGCTATGATTACTTATTTGCT---------------------------TTTAAATCTCTTTAGATGTTTATTAAACTT--CTATCATGCTTCAAAATGATTTTTTAAAAAT-TATTCAGTTTACTAAAGTATAATTTTGTTGC i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84846199 359 + 108143057 CTTTTTAATATGAAGATAATCTGTTCTCCCGGAATAAtgaggcccaagtgagataatctctaaagaaaagtcctttgtgaagagaaatgtgctatacaaatAAAAAA---TATATTAATAATAAATAGCCTTATGGACTTGCAAA----------ATAGTGTGGTGTTT---TCAG-AAAATTAGGCGGCTGTGGTTAGA--TTCATGCAGTAG-AAAAAGCCTTGAAGAGGATGTA--AAGTGCCTGAGATGTT-TGCTTCAAACTTGTTAATCAATGAC---GATTACTTGTTTGCT---------------------------TTTAAATCTCTTTGGATCTTTATTAAATTT--TAATTATGCTTCAAAATGA-TTTTTAAAAATATATTCAGTTAAATAAAGCATAA------TAA i micMur3.chr12 I 1110 C 0 s otoGar3.GL873536 1329292 360 - 29863360 -CTTTTAATATGAATATAATCTCTTTTCCCGGAATAATGAGGCCAAAGCAAGACAATCTCTAAATGAAAGTCCTTTTTAAACAGAAAAATGCTACATAAATATAAAA---TATGT---TAACAAATAGGCTTATGGCCTCACAAA----------ATAGCACATTCTTC--AGCTG-AAAATCGGGCAGCTCTGGTTTGA--TTCACACAATAG-AAAAAGCCTGGAAGAAGATGTA--TAGTGCATGAGGTGTT-TGCTTCTAATTTGTTAATTAATAACTAGGATTACTTATTTGCT---------------------------TTTAAGTATCTTTAGATCTTTATTAAATTT--CAATCATGCTCCAAAATGATTTTTTAAAAATATATTCTGTTAAATAAAGCATAA------TAA i otoGar3.GL873536 C 0 C 0 s mm10.chr13 76485904 332 + 120421639 CTTTTCTATGGGACTGTAGTCTGTTCTCCTGA---GACAAGGCTGCAGTAAGATA-----------GAAATCCTTTGAGAACTATGAAGTACCATGCAAATACA-----------TCAGACCAAGCCACA--ATGGGTTTACAAA----------ATTATACTTT-TCTTTGGGTA-GATATAAGGGTGCTGTAATTAGAGGTTCACAAAGTAG-GGAAAACCTACAAG-AGATGAA------GTGGGGGCGCTT-TTGTCTTTGC-------TTGTTGACTGCTGTGG-TTGTTTGAC---------------------------TTTATATTTCCTTTGGTCTTACTTACCCTTCACTACTGTGTT-----ATAAGTTTCAAAACCA-TGTCTTGTTTAATGGAGCATGTATTTCTTGC i mm10.chr13 C 0 N 0 s canFam3.chr3 14338542 394 + 91889043 -ctttttatgtaaatgtaatctgttctctcagaacggtgaggcttgagtgaggtcatctatgaatgaaaattctttgtaaacagaaaaatggtatgcaaatgtaaAA---TATATTAATAGTAAGTAGTTTTATGGATTCAAAAA----------ATAATGAGTCATCTTCAGGTG-AAAATAAGGCAGTAGTGGTTAGA--TTCATATAGTCA-AAAAAGCCTTGAAGATGATAAA--ATGTGTATGAGATGCT-TGCCTCTAAATTGGCAATCAAGGACCACAAttacttatttccttgttaactgtctttagctatttatttatttatttttctttagctatttattAAACTT--TAACCATGCTT-AACATGATCTTTTAATA---TATTGAAATTACTAGAGCATAATTTTGTTGC i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1268164 356 - 11655695 -CTTTCCCTATGAATATAATCTGTTCTCCTAGAATGgtgagacttgagagaggtaatctataaatgaaaatactttgt-aattgcaaagttttatgcaaatataaaatattatGTTAACAATCAATATCCCTGGGGAGCCATAAA----------ATAACAAGTGATCTTCAGATGAAAAATTAGGCAGCAGTGGTTAGA--TTCATGT-GTAG-AAAATGCCTTAATG---ATGTACGAAGTACATGGGATGTTCTGCCTCTTGTTTGGTGATCAGTGACTATGATTAATTATTTGCT---------------------------TTTAAATCTCTTTAGATCTTTATTAATATT--CAATCATGCTTCAAATTTTTTTTATA------TTTCCAGGTTAGTAGAGCAT----------- i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 634820 1793 - 10520994 I a score=6132090.000000 s hg38.chr5_GL383530v1_alt 78017 455 + 101241 ATACCAACA------CTTATTAGGATACAACTTTATATGCTTTTGAGGAAAAGCAATGAC-----------C----------ATTCGAGGTAAACCAAC-TACA-TGGCAGGTGCAATGTTACAAGTTTTACATTTGATAAGATTTTATTCTCTAGTTTCATACCTGGCATCCTGCTTAGCCTACCTTTACTGTCAG-AGATCTTATCAGCAAGTAGCAATCTATTCCCTCAAGAAATGTTCCTGCTGATAT-GGAAAAATAGGAAGGAAATGTCACTGGAACCGT-AATAGGCCTTTGTAAATCTTGGC-TT-AATACTGACACAAACAGCCATCCTGCTCTTAAATCCTCTGATACTCTTTAATTAAAGCCTTTT--C---------AGAGCCCTGAAAATTACCAATAGGTAAGCTAAAATAAAATCTATTTTATTTGATGAAATGTGG--CTTTAAGCACTTTTTCAAGACATA----TAAAAGTATTTGTCAATTTCTGTT s panTro5.chr5 20311906 455 + 181907262 ATACCAACA------CTTATTAGGATACAACTTTATATGCTTTTGAGGAAAAGCAATGAC-----------C----------ATTCGAGGTAAACCAAC-TACA-TGGCAGGTGCAATGTTACAAGTTTTGCATTTGATAAGACTTTATTCTCTAGTTTCATACCTGGCATCCTGCTTAGCCTACCTTTACTGTCAG-AGATCTTATCAGCAAGTAGCAATCTATTCCCTCAAGAAATGTTCCTGCTGATAT-GGAAAAATAGGAAGGAAATGTCACTGGAACCGT-AATAGGCCTTTGTAAATCTTGGC-TT-AATATTGACACAAACAGCCATCCTGCTCTTAAATCCTCTGATACTCTTTAATTAAAGCCTTTT--C---------AGAGCCCTGAAAATTACCAATAGGTAAGCTAAAATAAAATCTATTTTATTTGATGAAATGTGG--CTTTAAGCACTTTTTCAAGACATA----TAAAAGTATTTGTCAATTTCTGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20324230 455 + 183735486 ATACCAACA------CTTATTAGGATACAACTTTATATGCTTTTGAGGAAAAGCAATGAC-----------C----------ATTCGAGGTAAACCAAC-TACA-TGGCAGGTGCAATGTTACAAGTTTTACATTTGATAAGACTTTATTCTCTAGTTTCATACCTGGCATCCTGCTTAGCCTACCTTTACTGTCAG-AGATCTTATCAGCAAGTAGCAATCTATTCCCTCAAGAAATGTTCCTGCTGATAT-GGAAAAATAGGAAGGAAATGTCACTGGAACCGT-AATAGGCCTTTGTAAATCTTGGC-TT-AATATTGACACAAACAGCCATCCTGCTCTTAAATCCTCTGATACTCTTTAATTAAAGCCTTTT--C---------AGAGCCCTGAAAATTACCAATAGGTAAGCTAAAATAAAATCTATTTTATTTGATGAAATGTGG--CTTTAAGCACTTTTTCAAGACATA----TAAAAGTATTTGTAAATTTCTGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4810902 455 - 13748885 ATACCAACA------CTTATTAGGATACAACTTTATATGCTTTTGAGGAAAAGCAATGAC-----------C----------ATTCGAGGTAAACCAAC-TACA-TGGCAGGTGCAATGTTACAAGTTTTACATTTGATAAGACTTTATTCTCTAGTTTCTTACCTGGCATCCTGCTTAGCCTACCTTTACTGTCAG-AGATCTTATCAGTAAGTAGCAATCTATTCCCTCAAGAAATGTTCCTGCTGATAT-GGAAAAATAGGAAGGAAATGTCACTGGAACCGT-AATAGGCCTTTGTAAATCTTGGC-TT-AATATTGACACAAACAGCCATCCTGCTCTTAAATCCTCTGATACTCTTTAATTAAAGCCTTTT--C---------AGAGCCCTGAAAATTACCAATAGGTAAGCTAAAATAAAATCTATTTTATTTGATGAAATGTGG--CTTTAAGCACTTTTTTAAGACATA----TAAAAGTATTTGTCAATTTCTGTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53843452 454 - 163208435 ATACCAACA------CTTATTAGGATACAACTTTATATGCTTTTGAGGAAAAGCAATGAC-----------C----------ATTCGAGGTAAACCAAC-TACA-TGGCAGGTGCAATGTTACAAGTTTTACATTTGATAAGACTTTATTCTCTAGTTTCCTACCTGGCATCCTGCTTAGCCTACCTTTACTGTCAG-AGACCTTATCAGCAAGTAGCAATCTATTCCCTCAAGAAATGTTCC-ACTGATAT-GGAAAAATAGGAAGGAAATGTCACTGGAACCAT-AATAGGCCTTTGTAAATCTTGGC-TT-AATATTGACACAAACAGCCATCCTGCTCTTAAATCCTCTGATACTCTTTAATTAAAGCCTTTT--C---------AGAGCCCTGAAAATTACCAATAGGTAAGCTAAAATAAAATCTATTTTATTTGATGAAATGTGG--CTTTAAGCACTTTTTCAAGACATA----TAAAAGTATTTGTCAATTTCTGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87866332 454 - 180051392 ATACCAACA------CTTATTAGGACACAACTTTATGTGATTTTGAGGAAAAGCAATGAC-----------C----------ATTCGAGGTAAACCAAC-TATA-TGGCAGGTGCAATGTTACAAGCTTGACATTTGATAAGATTTTACTCTCTAGTTCCTCACCTGGCATCCTGCTTAGCCTACCTTTACTGTCAG-AGATCTGATCAGCAAGTAGCAATCTATTCCCTCAAGAAATGTTCCTGCTGATAT--GAAAAATAGGAAGGAAATGTCACTGGAACCAT-AATAGGCCTTTGTAAATCTTGGC-TT-AATATTGACACAAACAGTCATCCTGCTGTTAAATCCTCTGATACTCTTTAATTAAAGCCTTTT--C---------AGAGCCCTGAAAATTACCAATAGGTAAGCTAAAATGAAATCTATTTTATTTGATGAAATGTGG--CTTTAAGTACTTTTTCAAGACATA----TAAAAGTATTTGTCAATTTCTGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87970738 454 - 181584905 ATACCAACA------CTTATTAGGACACAACTTTATGTGATTTTGAGGAAAAGCAATGAC-----------C----------ATTCGAGGTAAACCAAC-TATA-TGGCAGGTGCAATGTTACAAGCTTGACATTTGATAAGATTTTACTCTCTAGTTCCTCACCTGGCATCCTGCTTAGCCTACCTTTACTGTCAG-AGATCTGATCAGCAAGTAGCAATCTATTCCCTCAAGAAATGTTCCTGCTGATAT--GAAAAATAGGAAGGAAATGTCACTGGAACCAT-AATAGGCCTTTGTAAATCTTGGC-TT-AATATTGACACAAACAGTCATCCTGCTGTTAAATCCTCTGATACTCTTTAATTAAAGCCTTTT--C---------AGAGCCCTGAAAATTACCAATAGGTAAGCTAAAATGAAATCTATTTTATTTGATGAAATGTGG--CTTTAAGTACTTTTTCAAGACATA----TAAAAGTATTTGTCAATTTCTGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1198143 454 - 8785636 ATACCAACA------CTTATTAGGACACAACTTTATGTGATTTTGAGGAAAAGCAATGAC-----------C----------ATTCGAGGTAAACCAAC-TATA-TGGCAGGTGCAATGTTACAAGCTTGACATTTGATAAGATTTTACTCTCTAGTTCCTCACCTGGCATCCTGCTTAGCCTACCTTTACTGTCAG-AGATCTGATCAGCAAGTAGCAATCTATTCCCTCAAGAAATGTTCCTGCTGATAT--GAAAAATAGGAAGGAAATGTCATTGGAACCAT-AATAGGCCTTTGTAAATCTTGGC-TT-AATATTGACACAAACAGTCATCCTGCTGTTAAATCCTCTGATACTCTTTAATTAAAGCCTTTT--C---------AGAGCCCTGAAAATTACCAATAGGTAAGCTAAAATGAAATCTATTTTATTTGATGAAATGTGG--CTTTAAGTACTTTTTCAAGACATA----TAAAAGTATTTGTCAATTTCTGTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1661820 454 + 27333823 ATACCAACA------CTTATTAGGACACAACTTTATGTGATTTTGAGGAAAAGCAATGAC-----------C----------ATTCGAGGTAAACCAAC-TATA-TGGCAGGTGCAATGTTACAAGCTTGACATTTGATAAGATTTTACTCTCTAGTTCCTCACCTGGCATCCTGCTTAGCCTACCTGTACTGTCAG-AGATCTGATCAGCAAGTAGCAATCTATTCCCTCAAGAAGTGTTCCTGCTGATAT--GAAAAATAGGAAGGAAATGTCACTGGAACCAT-AATAGGCCTTTGTAAATCTTGGC-TT-AATATTGACACAAACAGTCATCCTGCTGTTAAATCCTCTGATACTCTTTAATTAAAGCCTTTT--C---------AGAGCCCTGAAAATTACCAATAGGTAAGCTAAAATGAAATCTATTTTATTTGATGAAATGTGG--CTTTAAGTACTTTTTCAAGACATA----TAAAAGTATTTATCAATTTCTGTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1931446 453 - 91010382 ATACCAACA------CTTATTAGGACACAACTTTATGTGATTTTGAGGAAAAGCAATGAC-----------C----------ATTCGAGGTAAACCAAC-TATA-TGGCAGGTGCAATGTTACAAGCTTTACATTTGATAAGATTTTACTCTCTAGTTCCTCACCTGGCATCCTGCTTAGCCTCCCTGTACTGTCAG-AGATCTGATCAGCAAGTAGCAATCTATTCCCTCAAGAAATGTTCCTGCTGATAT--GAAAAGTAGGAAGGAAATGTCACTGGAACCAT-AATAGGCCTTTGTAAATCTTGGC-TT-AATATTGACACAAACAGTCATCCTGCTGTTAAATCCTCTGATACTCTTTAATTAAAGCCTTTT--C---------AAAGCCCTGAAAATTACCAATAGGCAAGCTAAAATGAAATCTATTTTATTTGATGAAATGTGG--CTTTAAGTACTTTTTTAAGACATA----TAAAA-TATTTGTCAATTTCTGTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2050900 454 + 5179401 ATACCAACA------CTTATTAGGACACAACTTTATGTGATTTTGAGGAAAAGCAATGAC-----------C----------ATTCGAGGTAAACCAAC-TATA-TGGCAGGTGCAATGTTACAAGCTTGACATTTGATAAGATTTTACTCTCTAGTTCCTCACCTGGCATCCTGCTTAGCCTACCTTTACTGTCAG-AGATCTGATCAGCAAGTAGCAATCTATTCCCTCAAGAAATGTTCCTGCTGATAT--GAAAAATAGGAAGGAAATGTCACTGGAACCAT-AATAGGCCTTTGTAAATCTTGGC-TT-AATATTGACACAAACAGTCATCCTGCTGTTAAATCCTCTGATACTCTTTAATTAAAGCCTTTT--C---------AGAGCCCTGAAAATTACCAATAGGTAAGCTAAAATGAAATCTATTTTATTTGATGAAATGTGG--CTTTAAGTACTTTTTCAAGACATA----TAAAAGTATTTATCAATTTCTGTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7753649 460 - 21726897 ATACCAAAATGTGTCCTTATTAGGACACAACTTTATGTGATTTTGAGGAAAAGCAATGAC-----------C----------ATTTGAGGTAAACCAAC-TATA-TGGCAGGTGCAATGTTACAAGCTTTACATTTTATAAGATTTTACTCTCTAGTTCCTCACCTGGCATCCTGCTTAGCCCACCTGTACTGTCAG-AGATCTGATCAGCAAGTAGCAATCTATTCCCTCAAGAAATGTTCCTGCTGATAT-GGAAAAATAGGAAGGAAATGTCACTGGAACCAT-AATAGGCCTTTATAAATCTTGGC-GT-AATATTGACACAAACAGTCATCCTGCTGTTAAATCCTCTGATACTTTTTAACTAAAGCCTTTT--C---------AGAGCCCTGAAAATTACCAATAGGTAAGAT-AAATAAAATCTATTTTATTTGATGAAATGTGG--CTTAAAGTACTTTTTCAAGACATA----TAAAAGTATTTGTCAATTTCTGTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112563222 457 + 204313951 TTACCAACA------CTTATTAGAATACAACTTTATATGATTTTGAGAAAAAGCAATGAC-----------C----------ATTCGAGGTAAACCAACATACA-TGGCAGGTACAATGTTACAAGCTTTACATTTGATGAGACTTTATTTTCTAGCTTCTCACCTGGCATCCTGCTTAGCCTACCTTTACTGTCAGAAGATCTGATCAGCAAATAGCAATCCATTCCGTCAAGAAATGTTCCTGCTGATAT-AGAAAAATAAGAAGGAAATGACACTGGAACCAT-AATAGGGCTTTGCAAATCTTGAC-TT-AATACTGACACAAACAGCCATTCTTCTCTTAAATCCTCTGGTGCTCTTTAATTAAAGCCTTTC--C---------AGAAGCCTGACAAATGCCAATAGGTGAGCTAAAATAAAATCTATTTTATTTGATGAAAGGTGG--CTTTAAGTACTTTTTTAAGACATA----TAAAAGTCTTTGTCAATTTCTGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45016672 457 + 71252344 TTACCAACA------CTTATTAGAATGCAACTTTATATGATTTTGAGAAAAAGCCATGAC-----------C----------ATTCGAGGTGAACCAACATACA-TGGCAGGTGCAATGTTACAAGCTTCACATTTGATAAGACTTTATTTTCTAGCTTCTCACCTGGCATCCTGCTTAGCCTACCTTTACTGTCAGAAGATCTGATCAGCAAATAGCAAAACATTCTGCCAAGAAATGTTCCTGCTGATAT-AGAAAAATAGGAAAGAAATGTCACTGGAACCAT-AATAGGCCGTTGCAAATCTTGAC-TT-AATATTGACACAAACAGCCATTCTGATCTTAAATCCTCTGGTACTCTTTAAGTAAAGCCTTTC--C---------AGAAGCCTGACAATTGCCAATAAGTGAGCTAAAATAAAAACTATTTTATTTGATGAAAGGTGG--CTTTAAGCACTTTTTCAAGACATA----TAGAAGTCTTTGTCAATTTCTGTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 375760 457 - 1393929 TTACCAACA------CTTATTAGAATACGACTTTATATGATTTTGAGAAAAAGCAATGAC-----------C----------ATTTGAGGTAAACCAACATACA-TGGCAGGTGCAATGTTACAAGCTTTACATTTGATAAGACTTTATTTTCTGGCTTCTCACCTGGCGTCCTGCTTAGCCTACCTTTACTGTCAGAAGATCTGATTAGCAAATAGCAATCCATTCCGTTAAGAAATGTTCCTGCTGATAT-AGAAAAATAGGAAAGAAATGTCACTGGAACCAT-AATAGGCCTTTGCAAATCTTGAC-TT-AATATTGACACAAACAGCCATTCTGCTCTTAAATCCTCTGGTACTCTTTAATTAAAGCCTTTC--C---------AGAAGCCTGACAATTGCCAATAGGTGAGCTAAAATCAAATCTATTTTATTTGATGAAAGGTGG--CTTTAAGCACTTTTTCAAGACATA----TAAAAGTCTTTGTCAGTTTCTGTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1448217 456 - 15889662 TTACCAACA------CTTATTAGAATACAACTTTATATGATTTTGAGAAAAATCAATGAC-----------C----------ATTCGAGGCAAACCAACATACA-TGGCAGGTGCAATGTTACAAACTTTACATTTGATCAGACTTTATTTTCTAGCTTCTCACCTGGCATGCTGCTTAGCCTACTTTTACTG-CAGAAGATCTGATCAGCAAATAGCAATCCATTCCATCAAGAAATGTTCCTGCTGATAT-AGAAAAATAGGAAAGAAATGTCACTGGAACCAT-AATAGGCCTTTGCAAATCTTGAC-TT-AATATTGACACAGACAGCCATTCTGCTCTTAAATCCTCTGGTACTCATTAATTAAAGCCTTTC--C---------AGAAGCCTGACAATTGCCAATAGGTGAGCTAAAATAAAATCTATTTTATTTGATGAAATGTGG--CTTTAAGCACTTTTTCAAGACACA----TAAAAGTCTTTGTCAATTTCTGTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84846558 463 + 108143057 ACCCTAACC------CTTGTTAGGACACAACTTTATACGGTTTTGAGGAAAAGTAATGAC-----------C----------ATTCCAGGTAAATCCACTTACC-TGGCAGGTGAAATGTTACAAGCTTTACATTTGGTAAGACTTCATTTTCTAGTTTCTCAACTGGCATCCAGCTTGGGCTATCTTTGCTGTCAGAAGATCTCATCAGCAAATAGCAATCCATTTCCTCAAGAAATGTTACTGCTGATAT-GGAAAAATAGGAAAGAAACGTCACTGGAACCATAAATAGGCCTTTGTAAATGTTGGCTTT-GATATTGACAGAAACAGCCATTATTATTTTAAATTCTCTGATATTCTTTAATTAAAGCCTTTT--A---------GGAGGGCTGAAAATTGCCAATATGTAAGCTAAAATAAAATCTATTTTATTTGATGAACTGTGG--TTTTAAACACCTTTTCAAGACATATATCTATATATATTTGTCAACTTCTGTT i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1329652 437 - 29863360 ACACTAATG------CTTACTAGGATACAACTTTATATAGTTTTGATGAA--------AC-----------T----------ATTCAAGGTAGACCCACTTAATGTGGCAGGTGATATGTTTC-AGTGTTACATTTGGTAAGA-TTAATTTTCTAGTTTCTCATCTGGCATCCAGCTTAACCTGTCATTGCTGTCAGAATATTTCATCAGCAGATAGCAACCTATTCTCTCAGGCAATGTTCCTGTTAGTAT-GGGAAAATAGAAAGGAAATGTCATCAGAATCAT-AGCAGGCCTTTATAAATCTTGGCTTT-AATATTGACATGAAGAGCCACTGTGATCGTCAATCCTCTGATAGTCT----TTAAAGCCATTT------------GGGGGCTTGAAAGTTGCCAGTAT----GCTAAGATAAAATCTATTTTATTTGATGAAATGTGA--CTTTAAATACCTTTTCAAGACATA-------AAATATTTGTCAATTTGTGTC i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14338936 460 + 91889043 CCACTTACT------TTGATTAGGGTATAACTTTGTATAGTTTTGAGGAAAAACAATGAC-----------CTTCTTCTCAGACTCAAGGTAAATCCACTTACA-TGACAGGTGAAATATTATATGCTTTATACTTGATAATTCTTTATTTTCTAGTTT-----GTAGTTTCTCACCTAGCCTACCTTCACTGTCAGAAGATCTCACCAGCAAATAG---TTCACTCACTCAA--AATATTCCTGCTGATGTGGAAAAAATAGGAAAGAAATGTCATTGGAACCAT-AATAGGCTTTTGTAAGTCTTGGT-TTCAATATTGATATAGATAGCCTTTGTGCTCTTATGTCCTCTGATATTCTTTAGTTAAAGCCTTCC--AGCCTCCCAGAAAGGCCTGAAAATGGTAAATATGTAAGTTAAAATAA----TGTACTATTTTATGGAATGTGG--TTTCAAATGCTTTTTCAAGACATA----GAAAAA----TGTCAACTTTTATT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1268520 433 - 11655695 ----------------TTAGTGGAGTATAACTTTGTACG-TTGTGAGGAAAAGTAGTGACGGCCCTTTGCAC----------ACTCAAGATAAATTAGCTTATA-TAACAGGTGAACTGGTAC-AGCATTACATTTGATAATGCTTCATTTTCTAGTTTCTCACCTG---------------------CACTGTCAGAAGATCTCACTAGCAAATAGCACTCCATTCCCTTAAG--ATGTTCCCGCTGACAT-GAGAAAATAAGAAGGAAATGTCACCAGAACCAT-AATAGACCCTTATAAATCTCAAC-TTCAATATTGACTCAAACAGCCTTTGTGCTCTTAAATCCTCTGATATTCTTTAATTAAAGCCCCCTGCC---------CGAGGCCTAGGAATTGCAAATATGGAAGCT-AACTAAAATCTAGTTTGTTTAATG---TGTAGAATTTTAAATG-TTTTTCAAGACATA----TAAAACCACTTGTCAAATTCTGTT i dasNov3.JH570378 C 0 I 3013 e proCoq1.NW_012147189v1 634820 1793 - 10520994 I a score=28781.000000 s hg38.chr5_GL383530v1_alt 78472 4 + 101241 AA-GT s panTro5.chr5 20312361 4 + 181907262 AA-GT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20324685 4 + 183735486 AA-GT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4811357 4 - 13748885 AA-AT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53843906 4 - 163208435 AA-GT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87866786 4 - 180051392 AA-TT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87971192 4 - 181584905 AA-TT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1198597 4 - 8785636 AA-TT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1662274 4 + 27333823 AA-TT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1931899 4 - 91010382 CA-TT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2051354 4 + 5179401 AA-TT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7754109 4 - 21726897 AA-TT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112563679 4 + 204313951 AA-TT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45017129 4 + 71252344 AA-TT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 376217 4 - 1393929 AA-TT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1448673 4 - 15889662 AA-TT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84847021 4 + 108143057 CA-TT i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1330089 5 - 29863360 AATTT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14339396 4 + 91889043 AA-TA i canFam3.chr3 C 0 C 0 e proCoq1.NW_012147189v1 634820 1793 - 10520994 I e dasNov3.JH570378 1268953 3013 - 11655695 I a score=2074040.000000 s hg38.chr5_GL383530v1_alt 78476 171 + 101241 TTTAGTAAAATAACAACTT--------------ACCTCCTTGATCTTAA---------ATAAATATGTCTGCCCTTTTATTGTATCCTACCTGTTATCTAAAAGAGACTTGAAAAAGGTTATGATGTGTAACAT------------ATGCACCATAAAACTAATGAATTACTACTAGACAGTACTCTAGAAGTTGGcacagaaaat s panTro5.chr5 20312365 171 + 181907262 TTTAGTAAAATAACAACTT--------------ACCTCCTTGATCTTAA---------ATAAATATGTCTGCACTTTTATTGTATCCTACCTGTTATCTAAAAGAGACTTGAAAAAGGTTATGATGTGTAACAT------------ATGCACCATAAAACTAATGAATTACTACTAGACAGTACTCTAGAAGTTGGcacagaaaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20324689 171 + 183735486 TTTAGTAAAATAACAACTT--------------ACCTCCTTGATCTTAA---------ATAAATATGTCTGCACTTTTATTGTATCCTACCTGTTATCTAAAAGAGACTTGAAAAAGGTTATGATGTGTAACAT------------ATGCACCATAAAACTAATGAATTACTACTAGACAGTACTCTAGAAGTTGGcacagaaaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4811361 171 - 13748885 TTTAGTAAAATAAAAACTT--------------ACCTCCTTGATCTTAA---------ATAAATATGTCTGCACTTTTATTGTATCCTACCTGTTATCTAAAAGAGACTTGAAAAAGGTTATGATGTGTAACAT------------ATGCACCATAAAACTAATGAATTACTACTAGACAGTACTCTAGAAGTTGGcacagaaaat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53843910 171 - 163208435 TTTAGTAAAATAACAGCTT--------------ACCTCCTTGATCTTAA---------ATAAATATGTCTGCACTTTTATTGTATCCCACCTGTTATCTAAAAGAGACTTGAAAAAGATTATGATGTGTAACAT------------ATGCACCATAAAACTAATGAATTACTACTAGGCAGTACTCTAGAAGTTGGcacagaaaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87866790 169 - 180051392 TTTACTAAAATAAAAAC----------------ACTTCCTTGATCTTAA---------ATAAATATGTCTGCACTTTTATTGTATCCTACCTGTTATCTAAAAGAGACTTGAAAAAGGTTATGATGTGTAACAT------------ATGTACCATAAAACTAATGAATTACTACTAGACAGTACTCTAGAAGTTGGcacagaaaat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87971196 169 - 181584905 TTTACTAAAATAAAAAC----------------ACTTCCTTGATCTTAA---------ATAAATATGTCTGCACTTTTATTGTATCCTACCTGTTATCTAAAAGAGACTTGAAAAAGGTTATGATGTGTAACAT------------ATGTACCATAAAACTAATGAATTACTACTAGACAGTACTCTAGAAGTTGGCACAGAAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1198601 169 - 8785636 TTTACTAAAATAAAAAC----------------ACTTCCTTGATCTTAA---------ATAAATATGTCTGCACTTTTATTGTATCCTACCTGTTATCTAAAAGAGACTTGAAAAAGGTTATGATGTGTAACAT------------ATGTACCATAAAACTAATGAATTACTACTAGACAGTACTCTAGAAGTTGGcacagaaaat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1662278 169 + 27333823 TTTACTAAAATAAAAAC----------------ACTTCCTTGATCTTAA---------ATAAATATGTCTGCACTTTTATTGTATCCTACCTGTTATCTAAAAGAGACTTGAAAAAGGTTATGATGTGTAACAT------------ATGTACCATAAAACTAATGAATTACTACTAGACAGTACTCTAGAAGTTGGcacagaaaat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1931903 169 - 91010382 TTTACTAAAATAAAAAC----------------ACTTCCTTGATCTTAA---------ATAAATACCTCTGCACTTTTATTGTATCCTACCTGTTATCTAAAAGAGACTTGAAAAAGGTTATGATGTGTAACAT------------ATGTACCATAAAACTAATGAATTACTACTAGACAGTACTCTAGAAGTTGGCACAGAAAAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2051358 169 + 5179401 TTTACTAAAATAAAAAC----------------ACTTCCTTGATCTTAA---------ATAAATATGTCTGCACTTTTATTGTATCCTACCTGTTATCTAAAAGAGACTTGAAAAAGGTTATGATGTGTAACAT------------ATGTACCATAAAACTAATGAATTACTACTAGACAGTACTCTAGAAGTTGGcacagaaaat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7754113 168 - 21726897 TTTACTAAAATAAAAAC----------------ACCTCCTTGATCTTAA---------ATAAATGTGTCTGCACTTTTATTGTATTCTACCTGTTATCTAAAAGAGACTTGAAAAAGGTTATGATGTGTAACAT------------ATGTA-CATAAAACTAATGAATTACTACTAGACAGTACTCTAGAAGTTGGcacagaaaat i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112563683 161 + 204313951 TTGACTAAAATCAAAACTT--------------ACCTCCTTGATCTTAA---------ATA----TGTCTACACTTT--TTGTAT----CCTGTTACCTAAAAGAGACTTGACAAAGGTTATGATGTGTAACAT------------ATGCAGTATAAAACTAATGAATTACTACTAGACAGTACTCTAGAAGTTGGcacagaaaag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45017133 160 + 71252344 TTGACTAAAGTCAAAACTT--------------CCCTCCTTGATCTTAA---------ATA----TGTCTACACTTT--TTGTAT----CCTGTTACCTAAAGAAGACTTGAAAAAGGTTATGATGTGTAACAT------------ATGTACTGTAAAACTAATGAATTACCACTAGACAGTACTCTAGAAGTTGGCACagaaaa- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 376221 161 - 1393929 TTGACTAAAATCAAAACTT--------------ACCTCCTTGATCTTAA---------ATA----TGTCTACACTTT--TTGTAT----ACTGTTACCTAAAGGAGACTTGAAAAAGGTTATGATGTATAACAT------------ATGCACTATAAAACTAATGAATTACTACTAGACAGTACTCTAGAAGTTGGCACAGAAAAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1448677 161 - 15889662 TTTACTAAAATCAAAACTT--------------ACCTCCTTGATCTTAA---------ATA----TGTCTACACTTT--TTGTGT----CCTGTTACCTAAAGGAGACTTGAAAAAGGTTATGATGTGTAACAT------------ATGCACTATAAAACTAATGAATTACTACTAGACAGTACTCTAGAAGTTGGCACAGAAaaa i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84847025 173 + 108143057 TTTACTAAAATCAAAATTT--------------ATCCCCTTGGTCTTAA---------GAT----TGTGTGCATTTT--TTATATCCTACATATTTCCTAAAAGAGACTTGAAAAAGGTTGTGATATGTAACATATCATATAACAAATGCACAATAAAACTAATGATTTATTACCACACAATACTCTGGAAGTAGGGATTAA---- i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1330094 167 - 29863360 TTTAGTAAAATAAAAATTT--------------TCCCTCTTGATCTTAA---------GAT----TGCATGCATTTTTATTATATTCTACCTATTCCCTAAAAGAGATTTTAAAAAGATTATGCTGTGTAACAT------------ATGCACAACAAAACGGATGAATTACTACTACACAATACTCTAGACATAGGGATTAAAAAG i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14339400 191 + 91889043 ATTACTAAAATCAGAACTTCCTTGATTTTTTGAACTTCCTTGATTTTAAC--ATGTGTGTACATATATATGTACTTGCTCTGTATCCTACCAGCTCCCTAAAAGAGATTTGCAAAAGAATATGATCTATAACAT------------AGACAAAGTAAAGCAAATGAATC-TTAATAGAATTTATTCTAGAACTTGGGAAAGAAAAG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1271966 178 - 11655695 tttagccaaatctgcttcc--------------cTTCCTTTGATCTTAACTTGTGTGTATGTGTGTGTGTGCACTTTAATTTTATCCTACCAATAACCTAAAGGAGATTTGAGGAAGGTTATGATAAATAGTAT------------ATATGCAATAAAACTAATGAATTATTACTAG-TAATA-TCTAGATATTGGgaaagacaag i dasNov3.JH570378 I 3013 C 0 e proCoq1.NW_012147189v1 634820 1793 - 10520994 I a score=1176622.000000 s hg38.chr5_GL383530v1_alt 78647 74 + 101241 aaaacaaatttgttcaaaaagagactaatatagttatataatgagcagctggtttgtttgactctcagctttct s panTro5.chr5 20312536 74 + 181907262 aaaacaaatttgttcaaaaagagactaatatagttatataatgagcagctggtttgtttgactctcagctttct i panTro5.chr5 C 0 C 0 s panPan2.chr5 20324860 74 + 183735486 aaaacaaatttgttcaaaaagagactaatatagttatataatgagcagctggtttgtttgactctcagctttct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4811532 73 - 13748885 aaaacaaatttgttc-aaaagagactaatatagttatataatgagcagctggtttgtttgactctcagctttct i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53844081 74 - 163208435 aaaacaaatttgttcaaaaagagactaatatagttatataatgagcagctggtttgtttgactctcagctttct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87866959 74 - 180051392 aaaacaaatttgttcaaaaagagactaatatagttatataatgagcagctggtttgtttgactctcagctttct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87971365 74 - 181584905 Aaaacaaatttgttcaaaaagagactaatatagttatataatgagcagctggtttgtttgactctcagctttct i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1198770 74 - 8785636 aaaacaaatttgttcaaaaagagactaatatagttatataatgagcagctggtttgtttgactctcagctttct i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1662447 74 + 27333823 aaaacaaatttgttcaaaaagagactaatatagttatataatgagcagctggtttgtttgactctcagctttct i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1932072 74 - 91010382 Aaaacaaatttgttcaaaaagagactaatatagttatataatgagcagctggtttgtttgactctcagctttct i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2051527 74 + 5179401 aaaacaaatttgttcaaaaagagactaatatagttatataatgagcagctggtttgtttgactctcagctttct i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7754281 74 - 21726897 aaaacaaatttgttcaaaaagagactaatatagttatataatgagcagctggtttgtttgactctcagctttct i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112563844 74 + 204313951 aaaacaaatttgtccaaaaagagactaatatagttatataatgagcagctggtttgtttgactctcagctttct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45017293 74 + 71252344 aaaacaaatttgttcaaaaagagactaatatagttatataatgagcagctggtttgtttgactctgagccttct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 376382 68 - 1393929 AAAACAAATTTGTTCAAAAAGAGACTAA------TATATAATGAGCAGCTGGTTTGtttgactctcagctttct i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1448838 74 - 15889662 aaaacaaatttgttcaaaaagagactaatatagttatataatgagcagctggtttgtttgacgctcagctttct i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84847198 73 + 108143057 Aaaacaaatttgttcaaaaagaggctaatatagttatctaaagagcacctga-ttatttgactctcagttttct i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 636613 73 - 10520994 AAAACAAATTAGTTCAAAGAGAGACTAATACAGTTATGTAATGAGCAGCTGA-TTatttgactctcagttttct i proCoq1.NW_012147189v1 I 1793 C 0 s otoGar3.GL873536 1330261 72 - 29863360 GAAACAAATTTGTTCAAAAGAAGACTAATACAGTTATGTTATGAGCA-CTGA-TTACTTCACtttctttttttt i otoGar3.GL873536 C 0 I 626 s canFam3.chr3 14339591 71 + 91889043 GAAGCAGATTTGTTC---AAGAGGCTAATACAATTATGTAATGAGTAGCTGATTTATGTGCCTTTAATCTTCAT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1272144 70 - 11655695 gaagcaaacttgtttaaagagaggctaatgtagttatttaatgtgcagc----ttatttgactttcaacttcct i dasNov3.JH570378 C 0 C 0 a score=999678.000000 s hg38.chr5_GL383530v1_alt 78721 66 + 101241 ggcagccaggggaaaa-atggaaataggctaaattatatattctcagtatcataaagg-aaaaaacat s panTro5.chr5 20312610 66 + 181907262 ggcagccaggggaaaa-atggaaataggctaaattatatattctcagtatcataaagg-aaaaaacat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20324934 66 + 183735486 ggcagccaggggaaaa-atggaaataggctaaattatatattctcagtatcataaagg-aaaaaacat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4811605 66 - 13748885 ggcagccaggggaaaa-atggaaataggctaaattatatattctcagtatcataaagg-aaaaaacat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53844155 66 - 163208435 ggcagccaggggaaaa-atggaaataggctaaattatatattctcagtatcataaagg-aaaaaacat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87867033 66 - 180051392 ggcagccaggggaaaa-atggaaataggctaaattatatattctcagtatcataaagg-aaaaaacat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87971439 66 - 181584905 ggcagccaggggaaaa-atggaaataggctaaattatatattctcagtatcataaagg-aaaaaacat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1198844 66 - 8785636 ggcagccaggggaaaa-atggaaataggctaaattatatattctcagtatcataaagg-aaaaaacat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1662521 66 + 27333823 ggcagccaggggaaaa-atggaaataggctaaattatatattctcagtatcataaagg-aaaaaacat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1932146 66 - 91010382 ggcagccaggggaaaa-atggaaataggctaaattatatattctcagtatcataaagg-aaaaaacat i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2051601 66 + 5179401 ggcagccaggggaaaa-atggaaataggctaaattatatattctcagtatcataaagg-aaaaaacat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7754355 66 - 21726897 ggcagccaggggaaaa-atggaaataggctaaattatatattctcagtatcataaagg-aaaaaacat i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112563918 65 + 204313951 ggcagcccagggaaaa-atggaaataggctaaattatatattctcagtatcataaagg--aaaaacat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45017367 64 + 71252344 ggaagccaagggaaaa-atggaaataggctaaattatatattctcagtatcataaagg--aaaAACA- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 376450 65 - 1393929 ggcagccaagggaaaa-atggaaataggctaaattatatattctcagtatcataaagg--aaaaacat i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1448912 65 - 15889662 ggcagccaagggaaaa-atggaaataggctaaattatatattctcagtatcataaagg--aaaaacat i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84847271 66 + 108143057 ggcatctacggaaaaa-atggaaataggctaaattatatattttcaatatcaaaaagg-aaaaaatgt i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 636686 65 - 10520994 ggcatctg-gggaaaa-atggaaataggctaaattatgtattctcaatatcataaagg-aaaaaacat i proCoq1.NW_012147189v1 C 0 C 0 s canFam3.chr3 14339662 68 + 91889043 GGAAGCCAGGGGAGAACATGGAAATAGGTTGAAATATATAGTCTCAGTATCATAAAGGAAAAAAACAT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1272214 65 - 11655695 ggaaggcagggcaaaa-gtaaaaataggctaaattatatattctcattatcagaaaga--agaaacat i dasNov3.JH570378 C 0 C 0 e otoGar3.GL873536 1330333 626 - 29863360 I a score=769394.000000 s hg38.chr5_GL383530v1_alt 78787 63 + 101241 gtcaaattcttaATGTACTGTATTATGTACAGTATAACCGTATTCATAAATACAGTTATACAT s panTro5.chr5 20312676 63 + 181907262 gtcaaattcttaATGTACTGTATTATGTACAGTATAACCGTATTCATAAATACAGTTATACAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20325000 63 + 183735486 gtcaaattcttaATGTACTGTATTATGTACAGTATAACCGTATTCATAAATACAGTTATACAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4811671 63 - 13748885 gtcaaattcttaaagTACTGTATTATGTACAGTATAACCATATTCATAAATACAGTTATACAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53844221 63 - 163208435 gtcaaattcttaATGTACTGTATTATGTAGAGTATAACCATATTCGTAAATACAGTTATACGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87867099 63 - 180051392 gtcaaattcttaATGTACTGTATTATGTACAGTATAACCATATTCATAAATATGGTTATACAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87971505 63 - 181584905 gtcaaattcttaATGTACTGTATTATGTACAGTATAACCATATTCATAAATATGGTTATACAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1198910 63 - 8785636 gtcaaattcttaATGTACTGTATTATGTACAGTATAACCATATTCATAAATATGGTTATACAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1662587 63 + 27333823 gtcaaattcttaATGTACTGTATTATGTACAGTATAACCATATTCACAAATATGGTTATACAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1932212 63 - 91010382 gtcaaattcttaATGTACTGTATTATGTACAGTATAACCATATTCATAAATATGGTTATACAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2051667 63 + 5179401 gtcaaattcttaATGTACTGTATTATGTACAGTATAACCATATTCATAAATATGGTTATACAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7754421 63 - 21726897 gtcaaattcttaATGTACTGTATTATGTACAGTATAACCATATTCATAAATACAGTTATACAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112563983 51 + 204313951 gtcaaattctta------------ATGTACTGTATAACCATATTCATAAATGTGGTTATACAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45017431 62 + 71252344 -TCAAATTCTTAATGCTCTGTATTATGTACTGTATAACCATATTCATAAATATGGTTATACAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 376515 63 - 1393929 gtcaaattcttaATGTACTGTATTACGTACTGTATAACCATATTCATAAATATGGTTATACAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1448977 63 - 15889662 gtcaaattcttAATGTACTGTATTATGTACTGTATAACCATATTCATAAATATGGTTATACAT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84847337 42 + 108143057 gccaaatccttaATGTACTGTATTATG---------------------AATATGGTTATACAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 636751 42 - 10520994 gtcaaatcctcaATGTACTATATTATG---------------------AATATGGTTATACAT i proCoq1.NW_012147189v1 C 0 I 34 s otoGar3.GL873536 1330959 38 - 29863360 GTCCAATTCTTAATATACTGGATTATG---------------------AATATGTGGAT---- i otoGar3.GL873536 I 626 C 0 s canFam3.chr3 14339730 40 + 91889043 GTTAAATTCTTA--GTACTGTATTATG---------------------CATGTGGCTTTATAT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1272279 42 - 11655695 atcaaattcttTTTGTACAGTATTGTG---------------------AATGTGGTTATACAT i dasNov3.JH570378 C 0 C 0 a score=447266.000000 s hg38.chr5_GL383530v1_alt 78850 35 + 101241 ACATGCCTCACCACATGTTGGAAAAAACTTACTCA------ s panTro5.chr5 20312739 35 + 181907262 ACATGCCTCACCACATGTTGGAAAAAACTTACTCA------ i panTro5.chr5 C 0 C 0 s panPan2.chr5 20325063 35 + 183735486 ACATGCCTCACCACATGTTGGAAAAAACTTACTCA------ i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4811734 35 - 13748885 ACATGCCTCACCACGTGTTGGAAAAAACTTACTCA------ i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53844284 35 - 163208435 ACATGCCTCACCACATGTTGGAAAAAACTTACTCA------ i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87867162 35 - 180051392 ACATGCCTCACCACATGTTGGAAAAAACTTACTCA------ i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87971568 35 - 181584905 ACATGCCTCACCACATGTTGGAAAAAACTTACTCA------ i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1198973 31 - 8785636 ACATGCCTCACCACATGTTGGAAAAA----ACTCA------ i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1662650 35 + 27333823 ACATGCCTCACCACATGTTGGAAAAAACTTACTCA------ i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1932275 35 - 91010382 ACATGCCTCACCACATGTTGGAAAAAACTTACTCA------ i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2051730 35 + 5179401 ACATGCCTCACCACATGTTGGAAAAAACTTACTCA------ i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7754484 35 - 21726897 ACATGCCTCACCACATGTTGGAAAAAACTTACTCA------ i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112564034 35 + 204313951 ACATGCCTCACCACATATTGGAAGAAACTTACCCA------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45017493 35 + 71252344 ACATGCCTCACCACATGTTGGAAAAAACTTACCCC------ i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 376578 35 - 1393929 ACATGCCTCACCACATGTTGGAAAAAACTTACCCA------ i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1449040 35 - 15889662 ACATGCCTCACCACATGTTGGAAAAAACTTACCCA------ i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84847379 35 + 108143057 ACGTGACTTACCACATATTGGAAAAGATTTGCTAA------ i micMur3.chr12 C 0 I 3 s otoGar3.GL873536 1330997 21 - 29863360 --------------ACATTGGAAAAGATTTGATAA------ i otoGar3.GL873536 C 0 I 3 s canFam3.chr3 14339770 35 + 91889043 CCATGATTCACCACCTGTGGGAAAAGGCTTGCCAA------ i canFam3.chr3 C 0 I 3 s dasNov3.JH570378 1272321 41 - 11655695 ACGTAATTTACCATACATTAGAAAAGATTGAGTAACTCTAA i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 636793 34 - 10520994 I a score=12548144.000000 s hg38.chr5_GL383530v1_alt 78885 868 + 101241 AAAACATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTTAAGTTAATGTGAAAAACTTTTTTTT------ATCCCTTGGGAATACTCTTTCTGTGCATGCAATTTTAGGTAGCAGCAGGGTATGGATGATAAAGAAAA-TTTTGCCATAGAGAAA-----AAAGTAAAAATTGTGAATGTATCTAATTTTAAAAATATTGGC-TGTATAGTTAGGATTCTGACAAA-TTGCATAATGACTAGCTCTGTCAACAATTGGGAGGTAAGGAAGAACAAAAATAAATTGCTTTC-AAAGTGTAGAATTTGTGAAAAGAATGAAGACCTCTATCTTCAGTGTACCTACTTGGAATTTGATTTCCAAAGCTCAAGTTTGTT--T-AAAATTTTAGCCTAGGAAAATATTGGTGTGCAATAGAAGAGGAAGGCAGATTGGTTACTGAAGTACAATAATGC-ACTT-GTAGCAGGAGTGGGAGTCAGCTCAGGAAACATATATTC-T---TAGTTGAAATGCATTTGTTAGTAACATACTATTGACCACTTGAGAAAGAATAGTAGAGGAAATATTT-------TCAAGCAAACCAATATACTTATTTTC----ACCTTTCTAGAAATGTTTGAAGAA---ATGAAACAAAGGAAAGTGACTCACTGGGACTTATAAC-TGAGAG-TCATGAGAGGG-TAAGAAGTTATAGTGATAGAAAATAAAAACAAATTGCTTCTTTGGGTGAAACTGTGAAGTCTG-TGGCAGATGGTTTC-TAAATCAATAACCTTTTCTTCAGATTCGCATGTGG--TGGAAGATAGTGTAACTATAGATTGTAATATACTGTCATAC-TTT-ATTAGCATTACTAAACCTTTCTGTTTGAAACCTAGGGGCACTTCGAAGAAGTTT--CT s panTro5.chr5 20312774 863 + 181907262 AAAACATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTTAAGTTAATGTGAAAAACTTTTTTTT------ATCCCTTGGGAATACTCTTTCTGTGCATGCAATTTTAGGTAGCAGCAGGGTATGGATGATAAAGAAAA-TTTTGCCATAGAGAAA-----AAAGTAAAAATTGTGAATGTATCTAATTTTAAAAATATTGGC-TGTATAGTTAGGATTCTGACAAA-TTGCGTAATGACTAGCTCTGTCAACAATTGGGAGGTAAGGAAGAACAAAAATAAATTGCTTTT-AAAGTGTAGAATTTGTGAAAAGAATGAAGACCTCTATCTTCAGTGTACCTACTTGGAATTTGATTTCCAAAGCTCAAGTTTGTT--T-AAAATTTTAGCCTAGGAAAATATTGGTGTGCAATAGAAGAGGAAGGCAGATTGGTTACTGAAGTACAATAATGC-ACTT-GTAGCAGGAGTGGGAGTCAGCTCAGGAAACATATATTC-T---TAGTTGAAATGCATTTGTTAGTAACATACTATTGACCACTTGAGAAAGAATAGTAGAGGAAATATTT-------TCAAGCAAACCAATATACTTATTTTC----ACCTTTCTAGAAATGTTTGAAGAA---AT-----AAAGGAAAGTGACTCACTGGGACTTATAAC-TGAGAG-TCATGAGAGGG-TAAGAAGTTATAGTGATAGAAAATAAAAACAAATTGCTGCTTTGGGTGAAACTGTGAAGTCTG-TGGCAGATGGTTTC-TAAATCAATAACCTTTTCTTCAGATTCGCATGTGG--TGGAAGATAGTGTAACTATAGATTGTAATATACTGTCATAC-TTT-ATTAGCATTACTAAACCTTTCTGTTTGAAACCTAGGGGCACTTCGAAGAAGTTT--CT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20325098 868 + 183735486 AAAACATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTTAAGTTAATGTGAAAAACTTTTTTTT------ATCCCTTGGGAATACTCTTTCTGTGCATGCAATTTTAGGTAGCAGCAGGGTATGGATGATAAAGAAAA-TTTTGCCATAGAGAAA-----AAAGTAAAAATTGTGAATGTATCTAATTTTAAAAATATTGGC-TGTATAGTTAGGATTCTGACAAA-TTGCATAATGACTAGCTCTGTCAATAATTGGGAGGTAAGGAAGAACAAAACTAAATTGCTTTC-AAAGTGTAGAATTTGTGAAAAGAATGAAGACCTCTATCTTCAGTGTACCTACTTGGAATTTGATTTCCAAAGCTCAAGTTTGTT--T-AAAATTTTAGCCTAGGAAAATATTGGTGTGCAATAGAAGAGGAAGGCAGATTGGTTACTGAAGTACAATAATGC-ACTT-GTAGCAGGAGTGGGAGTCAGCTCAGGAAACATATATTC-T---TAGTTGAAATGCATTTGTTAGTAACATACTATTGACCACTTGAGAAAGAATAGTAGAGGAAATATTT-------TCAAGCAAACCAATATACTTATTTTC----ACCTTTCTAGAAATGTTTGAAGAA---ATGAAACAAAGGAAAGTGACTCACTGGGACTTATAAC-TGAGAG-TCATGAGAGGG-TAAGAAGTTATAGTGATAGAAAATAAAAACAAATTGCTGCTTTGGGTGAAACTGTGAAGTCTG-TGGCAGATGGTTTC-TAAATCAATAACCTTTTCTTCAGATTCGCATGTGG--TGGAAGATAGTGTAACTATAGATTGTAATATACTGTCATAC-TTT-ATTAGCATTACTAAACCTTTCTGTTTGAAACCTAGGGGCACTTCGAAGAAGTTT--CT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4811769 869 - 13748885 AAAACATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTTAAGTTAATGTGAAAAACTTTTTTTT-----AATCCCTTGGGAATACTCTTTCTGTGCACGCAATTTTAGGTAGCAGCAGGCTATGGATGATAAAGAAAA-TTTTGCCATAGAGAAA-----AAAGTAAAAATTGTGAATGTATCTAATTTTAAAAATATTGGC-TGTATAGTTAGGATTCTGACAAA-TTGCATAATGACTAGCTCTGTCAACAATTGGGAAGTAAGGAAGAACAAAAATAAATTGCTTTC-AAAGTGTAGAATTTGTCAAAAGAATGAAGACCTCTGTCTTCAGTGTACCTACTTGGAGTTTCATTTCCAAAGCTCAAGTTTGTT--T-AAAATTTTAGCCTAGGAAAATATTTGTGTGCAATAGAAGAGGAAGGCAGATGGGTTACTGAAGTACAATAATGC-ACTT-GTAACAGGAGTGGGAGTCAGCTCAGGAAACATATATTC-T---TAGTTGAAATGCATTTGTTAGTAACATACTATTGACCACTTGAGAAAGAATAGTAGAGGAAATATTT-------TCAAGCAAACCAGTATACTTATTTTC----ACCTTTCTAGAAATGTTTGAAGAA---ATGAAACAAAGGAAAGTGACTCACTGGGACTTATAAC-TGAGAG-TCATGAGAGGG-TAAGAAGTTATAGTGATAGAAAATAAAAACAAATTGCTTCTTTGGGTGAAAATGTGAAGTCTG-TGGCAGATGGTTTC-TAAATCAATAACCTTTTCTTCAGATTCGCATGTGG--TGGAAGATAGTGTAACTATAGATTGTAATATACTGTCATAC-TTT-ATTAGCATTACTAAACCTTTCTGTTTGAAACCTAGGGGCACTTCGAAGAAGTTT--CT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53844319 869 - 163208435 GAAACATGTCTGTTTTACTAA--ATTTGTA-TTTTTAATTACTTTGCTTAAGTTAATGTGAAAAACTTTTTTTT------ATCCCTTGGGAATACTCTTTCTGTGCACACAATTTTAGGTAGCAGCAGGGTATGGATGATAAAAAAAA-TTTTGCCATAGAGAAA-----AAAGTAAAAATTGTGAATGTATCTAATTTAAAAAATATTGGC-TGTATAGTTAGGATTCTGACAAA-TTGCATAATGACTAGCTCTGTCAACAATTGGGAAGTAAGGAAGAACAAAAATAAATTGCTTTC-AAAGTGTAGAATTTATCAAAAGAATGAAGACCTCTATCTTCAGTGTACCTACTTGGAGTTTGATTTCCAAAGCTCAAGTTTCCT--T-AAAATTTTAGCCTAGGAAAATATTTGTGTGCAATAGAAGAGGAAGGCAGATTGGTTACTGAACTACAATAATGC-ACTT-GTAACAGGAGTGGGAGTCAGCTGAGGAAACATATATTC-T---TAGTTGAAATGCATTTGTTAGTAGCATGCTATTGACCACTTGAGAAAGAATAGTAGAGGAAATATTT-------TCAAACAAACCAATATACTTATTTTC----ACCTTTCTAGAAATGTTTGAAGAA---ATGAAACAAAGGAAAGTGACTCACTGGGACTTATAAC-TGAGAG-TCATGAGAGGGATAAGAAGTTATAGTGATAGAAAATAAAAACAAATTGCTTCTTTGGGTGAAACTGTGAAGTCTG-TGGCAGATGGTTTC-TAAATCAATAACCTTTTCTTCGGATTCGCATGTGG--TAGAAGATAGTGTAACTATAGATTGTAATATACTGTTGTAC-TTT-ATTAGCATCAGTAAACCTTTCTGTTTGAAACCTAGGGACACTTCGAAAAAGTTT--CT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87867197 875 - 180051392 AAAACATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTTAAGTTAATGTGAAAAACTTTTTTTT------ATCCCTTGGGAATACTCTTTCTGTGCACACAATTTTAGGTTGCAGCAGGGTACGGATGATAAAGAAAA-TTTTGCCATAGAGAAA-----AAAGTAAAAATTGTGAATGTATCTAATTTTAAAAATATTGGC-TGTATAGTTAGGATTCTGACAAA-TTCCATAATGACTAGCTTTGTCAACAATTGTGAAGTAAGGAAGAACAAAAATAAATTGCTTTC-AAAATGTAGAATTTGTCAAAAGAATGAAGACCTCTATCTTCAGCGTACCTACTTAGAGTTTGATTTCCAAAGCTCAAGTTTCTT--T-AAAAACTTAGCCTAGAAAAATATTTGTGTGCAATAGAAGAGTAAGGCAGATTGATTACTGAACTACAGTAATTC-ACTT-GTAACAGGAGTGGGAGTCAGCTCAGGAAACATATATTC-TTCATAGTTGAAATTCATTTGTTAGTAACATACTATTGACCACTTGAGAGAGAATAGTAGAGGAAATATCT-------TCAAGCAAACCAATATACTTATTTTC----ACCTTTCTAGAAATTTTTGGAGAAATGATGAAACAAAGGAAAGTGATTCACTGGGACTTACAAC-TGAGAG-TCGTGAGAGGGATAAGAAGTTATAGTGATAGAAAATAAAAACAAATTGCTTCTTTGGGTGAAACTGTGAGGTCTG-TGGCAGATGGTTTC-TAAATCAATAACCTTTTCTTCAGATTCACATGTGG--TAGAAGATAGTGTAACTATAGATTGTAATATACTGTTGTAC-TTT-ATTAGCATTACTAAACCTTTCTGTTTGAAACCTAGGGGCACTTCAAAGAAGTTT--CT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87971603 875 - 181584905 AAAACATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTTAAGTTAATGTGAAAAACTTTTTTTT------ATCCCTTGGGAATACTCTTTCTGTGCACACAATTTTAGGTTGCAGCAGGGTACGGATGATAAAGAAAA-TTTTGCCATAGAGAAA-----AAAGTAAAAATTGTGAATGTATCTAATTTTAAAAATATTGGC-TGTATAGTTAGGATTCTGACAAA-TTCCATAATGACTAGCTTTGTCAACAATTGTGAAGTAAGGAAGAACAAAAATAAATTGCTTTC-AAAATGTAGAATTTGTCAAAAGAATGAAGACCTCTATCTTCAGCGTACCTACTTAGAGTTTGATTTCCAAAGCTCAAGTTTCTT--T-AAAAACTTAGCCTAGAAAAATATTTGTGTGCAATAGAAGAGTAAGGCAGATTGATTACTGAACTACAGTAATTC-ACTT-GTAACAGGAGTGGGAGTCAGCTCAGGAAACATATATTC-TTCATAGTTGAAATTCATTTGTTAGTAACATACTATTGACCACTTGAGAGAGAATAGTAGAGGAAATATCT-------TCAAGCAAACCAATATACTTATTTTC----ACCTTTCTAGAAATTTTTGGAGAAATGATGAAACAAAGGAAAGTGACTCACTGGGACTTACAAC-TGAGAG-TCGTGAGAGGGATAAGAAGTTATAGTGATAGAAAATAAAAACAAATTGCTTCTTTGGGTGAAACTGTGAGGTCTG-TGGCAGATGGTTTC-TAAATCAATAACCTTTTCTTCAGATTCACATGTGG--TAGAAGATAGTGTAACTATAGATTGTAATATACTGTTGTAC-TTT-ATTAGCATTACTAAACCTTTCTGTTTGAAACCTAGGGGCACTTCAAAGAAGTTT--CT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1199004 875 - 8785636 AAAACATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTTAAGTTAATGTGAAAAACTTTTTTTT------ATCCCTTGGGAATACTCTTTCTGTGCACACAATTTTAGGTTGCAGCAGGGTACGGATGATAAAGAAAA-TTTTGCCATAGAGAAA-----AAAGTAAAAATTGTGAATGTATCTAATTTTAAAAATATTGGC-TGTATAGTTAGGATTCTGACAAA-TTCCATAATGACTAGCTTTGTCAACAATTGTGAAGTAAGGAAGAACAAAAATAAATTGCTTTC-AAAATGTAGAATTTGTCAAAAGAATGAAGACCTCTATCTTCAGCGTACCTACTTAGAGTTTGATTTCCAAAGCTCAAGTTTCTT--T-AAAAACTTAGCCTAGAAAAATATTTGTGTGCAATAGAAGAGTAAGGCAGATTGATTACTGAACTACAGTAATTC-ACTT-GTAACAGGAGTGGGAGTCAGCTCAGGAAACATATATTC-TTCATAGTTGAAATTCATTTGTTAGTAACATACTATTGACCACTTGAGAAAGAATAGTAGAGGAAATATCT-------TCAAGCAAACCAATATACTTATTTTC----ACCTTTCTAGAAATTTTTGGAGAAATGATGAAACAAAGGAAAGTGACTCACTGGGACTTACAAC-TGAGAG-TCgtgagagggataggaagttatagtgatagAAAATAAAAACAAATTGCTTCTTTGGGTGAAACTGTGAGGTCTG-TGGCAGATGGTTTC-TAAATCAATAACCTTTTCTTCAGATTCACATGTGG--TAGAAGATAGTGTAACTATAGATTGTAATATACTGTTGTAC-TTT-GTTAGCATTACTAAACCTTTCTGTTTGAAACCTAGGGGCACTTCAAAGAAGTTT--CT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1662685 872 + 27333823 AAAACATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTTAAGTTAATGTGAAAAACTTTTTTTT------ATCCCTTGGGAATACTCTTTCTGTGCACACAATTTTAGGTTGCAGCAGGGTACGGATGATAAAGAAAA-TTTTGCCATAGAGAAA-----AAAGTAAAAATTGTGAATGTATCTAATTTTAAAAATATTGGC-TGTATAGTTAGGATTCTGACAAA-TTCCATAATGACTAGCTTTGTCAACAATTGTGAAGTAAGGAAGAACAAAAATAAATTGCTTTC-AAAATGTAGAATTTGTCAAAAGAATGAAGACCTCTATCTTCAGCGTACCTACTTAGAGTTTGATTTCCAAAGCTCAAGTTTCTT--T-AAAAACTTAGCCTAGAAAAATATTTGTGTGCAATAGAAGAGTAAGGCAGATTGATTACTGAACTACAGTAATTC-ACTT-GTAACAGGAGTGGGAGTCAGCTCAGGAAACATATATTC-TTCATAGTTGAAATTCATTTGTTAGTAACATACTATTGACCACTTGAGAAAGAATAGTAGAGGAAATATCT-------TCAAGCAAACCAATATACTTATTTTC----ACCTTTCTAGAAATTTTTGGAGAA---ATGAAACAAAGGAAAGTGACTCACTGGGACTTACAAC-TGAGAG-TCATGAGAGGGATAAGAAGTTATAGTGATAGAAAATAAAAACAAATTGCTTCTTTGGGTGAAACTGTGAGGTCTG-TGGCTGATGGTTTC-TAAATCAATAACCTTTTCTTCAGATTCACATGTGG--TAGAAGATAGTGTAACTATAGATTGTAATATACTGTTGTAC-TTT-ATTAGCATTACTAAACCTTTCTGTTTGAAACCTAGGGGCACTTCAAAGAAGTTT--CT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1932310 872 - 91010382 AAAACATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTTAAGTTATTGTGAAAAACTTTTTTTT------ATCCCTTGGGAATACTCTTTCTGTGCACACAATTTTAGGTTGCAACAGGGTATGGATGATAAAGAAAA-TTTTGCCATAGAGAAA-----AAAGTAAAAATTGTGAATGTATCTAATTTTAAGAATATTGGC-TGTATAGTTAGGATTCTGACAAA-TTCCATAATGACTAGCTTTGTCAACAATTGTGAAGTAAGGAAGAACAAAAATAAATTGCTTTC-AAAATGTAGAATTTGTCAAAAGAATGAAGACCTCTATCTTCAGCGTACCTACTTAGAGTTTGATTTCCAAAGCTCAAGTTTCTT--T-AAAAACTTAGCCTAGAAAAATATTTGTGTGCAATAGAAGAGGAAGGCAGATTGGTTACTGAACTACAATAATTC-ACTT-GGAACAGGAGTGGGAGTCAGCTCAGGAAACATATATTC-TTCATAGTTGAAATTCATTTGTTAGTAACATACTATTGACCACTTGAGAAAGAATAGTAGAGGACATAATT-------TCAAGCAAACCAATATACTTATTTTC----ACCTTTCTAGAAATTTTTGGAGAA---ATGAAACAAAGGAAAGTGACTCACTGGGACTTACAAC-TGAGAG-TCATGAGAGGGATAAGAAGTTATAGTGATAGAAAATAAAAACAAATTGCTTCTTTGGGTGAAACTGTGAGGTCTG-TGGCAGATGGTTTC-TAAATCAATAACCTTTTCTTCAGATTCACATGTGG--TAGAAGATAGTGTAACTATAGATTGTAATATACTGTTGTAC-TTT-GTTAGCATTACTAAACCTTTCTGTTTGAAACCTAGGGGCACTTCGAAGAAGTTT--CT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2051765 871 + 5179401 AAAACATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTTAAGTTAATGTGAAAAACTTTTTTTT------ATCCCTTGGGAATACTCTTTCTGTGCACACAATTTTAGGTTGCAGCAGGGTACGGATGATAAAGAAAA-TTTTGCCATAGAGAAA-----AAAGTAAAAATTGTGAATGTATCTAATTTTAAAAATATTGGC-TGTATAGTTAGGATTCTGACAAA-TTCCATAATGACTAGCTTTGTCAACAATTGTGAAGTAAGGAAGAACAAAAATAAATTGCTTTC-AAAATGTAGAATTTGTCAAAAGAATGAAGACCTCTATCTTCAGCGTACCTACTTAGAGTTTGATTTCCAAAGCTCAAGTTTCTT--T-AAAAACTTAGCCTAGAAAAATATTTGTGTGCAATAGAAGAGTAAGGCAGATTGATTACTGAACTACAGTAATTC-ACTT-GTAACAGGAGTGGGAGTCAGCTCAGGAAACATATATTC-TTCATAGTTGAAATTCATTTGTTAGTAACATACTATTGACCACTTGAGAAAGAATAGTAGAGGAAATATCT-------TCAAGCAAACCAATATACTTATTTTC----ACCTTTCTAGAAATTTTTGGAGAA---ATGAAACAAAGGAAAGTGACTCACTGGGACTTACAAC-TGAGAG-TCGTGAGAGGGATAAGAAGTTATAGTGATAGAAAATAAAAACAAATTGCTTCTTTGGGTGAAACTGTGAGGTCTG-TGGCAGATGGTTTC-TAAATCAATAACCTTTTCTTCAGATTCACATGTGG--TAGAAGATAGTGTAACTATAGATTGTAATATACTGTTGTAC-TTT-ATTAGCATTACTAAACCTTTCTGTTTGAAACCT-GGGGCACTTCGAAGAAATTT--CT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7754519 870 - 21726897 AAAACATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTTAAGTTAA-GTGAAAAAC-TTTTTTT------ATCCCTTGGGAATACTCTTTCTGTGCACACAATTTTAGGTAGCAGCAGAGTATGGATGATAAAGAAAA-TTTTGCGATAGAGAAA-----AAAGTAAAAATTGTGAATGTATCTAATTTAAAAAATATTGGC-TGTATAGTTAGGGTTCTGACAAA-TTCCATAATGACTAGCTTTGTCAACAATGGTGAAGTAAGGAAGAACAAAAATAAATTGCTTTC-AAAATGTAGAATTTGTCAAAAGAATGAAGACCTCTATCTTCAGCGTACCTACTTCGAGTTTGATTTCCAAAGCTCAAGTTTCTT--T-AAAAACTTAGCCTAGAAAAATATTTGTGTGCAATAGAAGAGGAAGGCAGATTGGTTACTGAACTACAATAATTC-ACTT-GTAACAGGAGTGGGAGTCAGCTCAGGAAACGTATATTC-TTCATAGTTGAAATTCATTTGTTAGTAACATACTATTGACCACTTGAGAAAGAATAGTAGAGGAAATATTT-------TCAAGCAAACCGATGTACTTAGTTTC----ACCTTTCTAGAAATTTTTGGAGAA---ATGAAACAAAGGAAAGTGACTCACTGGGACTTACAAC-TGAAAG-TCATGAGAGGGATAAGAAGTTATAGTGATAGAAAATAAAAACAAATTGCTTCTTTGGGTGAAACTGTGAGGTCTG-TGGCAGATGGTTTC-TAAACCAATAACCTTTTCTTCAGACTCACATGTGG--TAGAAGATAGTGTAACTATAGATTGTAATATACTGTTGTAC-TTT-ATTAGCATTACTAAACCTTTCTGTTTGAAACCTAGGGGCACTTCGAAGAAGTTT--CT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112564069 867 + 204313951 AAAACATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTTAAGTTAATGAGAAAGAC-TTTTTTT------ATCCCTTGGGAATACTCATTCTGTGCACACAATTTTAGGTAGCAGCAGGGTATGGATGAT---GAAAA-TTTTGCCATAGAGAAA-----AAAGTAAAAATTGTGAATGTATCTAATTTTAAAAATATTGAC-TGTATAGTCAGGATTCTGACAAA-TTCCATAGTGACTAGCTTTCTCAACAATTGGGAAGTATAGTTGAACAAAAACAAATTGCTTTC-AAAGTGGAGAATTTGTCAAAAGAATGAAGACTCCTATCTTCAATGTACGTACTTGGAGTTTGATTCCCAAAGCTCAAGTTTCTTTAT-AAAACCTTAGCCTAGGAAAAGATTTTTGTGCAATAGAAGATGAAGACAGATTGGTTACTGAACTATCATAATGC-ACTT-GTAACAGGAGTGGGAGTCAGTTCAGAAAACT--TATTC-TTCTTAGTTGATATGCATTTGTTAGTAACATGCTATTGACCACTTGAGAAAGAATAGTAGAGAAAACATTT-------TCAAGCAAACCAATATACTTATTTTC----ACCTTTCTAGAAATGTTTGAAGAA---ATGAAACAAAGGAAGGTGACTCATTGGGACTTATAAC-CGAGAG-CCATGAGAGGGATAAGAAGTTATAGTGATAGAAAATAAAAACAAATTGCTTCTTTGTGTGAAATTGTGAAGTCTC-TGGCAGATGGTTTC-TAAATCAATAAACTTTTTTTCAGATTCACATGTGG--TAGAAGATAGTGTAAT-ATAGATTGTAATATACTGTTGTAC-TTT-ATTAGCCTGACTAAACTTTTGTGTTTGAAACCTAGGGGCACTTTGAGAAGTTTC--TT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45017528 868 + 71252344 AAAGCATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTTAAGTTAACGTGAAAGAC-TTTTTTT------ATCCCTTGGGAATACTCATTCTGTGCACACAATTTTAGGTAGCAGAAGGGTATGGATGAT---GAAAA-TTTTGCCATAGAGAAA-----AAAGTAAAATTTGTGAATGTATCTAATTTTAAAAATATTGAC-TGTATAGTCAGGATTCTGACAAA-TTCCATAGTGACTAGCTTTCTCAACAATTGGGAAGTACAGTTGAACAAAAACAAATTGCTTTCAAAAGTGCAGAGTTTGTCAAAAGAATGAAGACTTCTATCTTCAATGTACCTACTTGGAGTTTGATTCCCAAAGTTCAAGTTTCTT--T-AAAACCTTAGTCTAGGAAAAGACTTTTGTGCAATAGAAGAGGAAGACAGATTGGTTACTGAACTATAATAATGC-ACTT-GTAACAAGAGTGGGAGTCAGTTCAGAAAACT--TATTC-TTCTTAGTCGAAATGCATTTGTTAGTAACATACTATTGACCACTTGAGAAAGAATAGTAGAGAAAACATTT-------TCAAGCAAACCAATATACTTATTTTC----ACCTTTCTAGAAATGTTTGAAGAA---ATGAAACAAAGGAAGGTGACTCATTGGGACTTATAAC-CGAGAG-CCATGAGAGGGATAAGAAGTTATAGTGATAGAAAATAAAAACAAATTGCTTCTTTGGGTGAGATTGTGAGGTCTC-TGGCAGATGGTTTC-TAAATCAATAAACTTTTTTTCAGTTTCACATGTGG--TAGAAGATAATGTAAC-ATAGATTGTAATATACTGTTGTAC-TTT-ATTAGCCTGACCAAACTTATGTGTTTGAAACCTAGGGGCACTTTGAGAAATTTCtttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 376613 865 - 1393929 AAAACATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTTGAGTTAATGGGAAAGGC-TTTTTTT------ATCCCTTGGGAATACTCATTCTGTGCACACAATTTTAGGTAGCAGCAGGGTATGGATGAT---GAAAA-TTTTGCCATAGAGAAA-----AAAGTAAAAATTGTGAATGTATCTAATTTTAAAAATATTGAC-TCTATAGTCAGGATTCTGACAAA-TTCCACAGTGACTAGCTTTCTCAACAATTGGGAAATACAGTTGAACAAAAACAAATTGCTTTC-AAAGTGCAGAGTTTGTCAAAAGAGTGAAGACCTCTATCTTCAATGTACCTACTTGGAGTTTGATTCCCAAAGCTCAAGTTTCTT--T-AAAACCTTAGTCTAGGAAAAGATTTTTGTGCAATAGAAGAGGAAGACAGATTGGTTACTGAACTATAATAATGC-ACTT-GTAACAGGAGTGGGAGTCAGTTCAGAAAACT--TATTC-TTCTCAGTTGAAATGCATTTGTTAGTAACATACTATTGACCACTTGAGAAAGAATAGTAGAGAAAACATTT-------TCAAGCAAACCAATATACTTATTTTC----ACCTTTCTAGAAATGTTTGAAGAA---ATGAAACAAAGGAAGGTGACTCATTGGGACTTATAAC-TGAGAG-CCATAAAAGGGATAAGAAGTTATAGTGATAGAAAATAAAAACAAATCGCTTCTTTGGGTGAAATTGTGAGGTCTC-TGGCAGATGGTTTC-TAAATCAATAAACTTTTTTTCAGATTCACATGTGG--TAGAAGATAGTGTAAC-ATAGATTGTAATATACTGTTTTAC-TTT-ATTAGCCTGGCCAAACTTTTGTATTTGAAACCCAGGGGCACATTGAGAAGTTTC--TT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1449075 865 - 15889662 AAAACATGTCTGTTTTACTAA--ATTTATA-TTTTTAATTACCTTGCTTAAGTTAATGTGAAAGACTTTTTTTT------ATCCCTTGGGAATACTCATTCTGTGCACACAATTTTAGGTAGCAGCAGGGTATGGATGAT---GCAAA-TTTTGCCATAGAG-AA-----AAAGTAAAAATTGTGAATGTACCTAATTTTAAAAATATTGAC-TGTATAGTCAGGATTCTGACAAA-TTCCATAGTGACTAGCTTTCTCAACAATTGGGAATTACAGTTGAACAAAAACAAATTGCTTTC-AAAGTGCAGAATTTGTCAAAAGAATGAAGACCTCTATCTTCAATGTACCTACTTGGAGTTTGATTCCTAAAGCTCAAGTTTCTT--T-AAAACCTTAGGCTAGGAAAAGATTTTTGTGCAATAGAAGAGGAAGACAGATTGGTGACTGAACTATAATAATGC-ACTT-GTAACAGGAGTGGGAGTCAGTTCAGAAAACT--TATTC-TTCTTAGCTGAAATGTATTTGTTCGTAACATACTATTGACCACTTGAGAAAGAATAGTGAAGAAAACATTT-------TCAAGCAAACCAATATACTTACCTTC----ACCTTTCTAGAAATGTTTGAAGAA---ATGAAACAAAGGAAGATGACTCATTGGGACTTATAAC-CGAGAG-TCATGAGAGGGATAAGAAGTTACAGTGATAGAAAATAAAAACAAATTGCTTCTTTGGGTGAAGTTGTGAAGTCTC-TGGCAGATGGTTTC-TATATCAATAAACTTTTTTTCAGATTCACATGTGG--TAGAAGATACTGTAAT-ATAGATTGTAATATACTGTTGTAC-TTT-ATTAGCCTGACTAAACTTTTGTGTTTGAAACCTAGCGGCACTTTGAGAAGTTTC--TT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84847417 866 + 108143057 CAAACATGTCTGTTTTACTaa--atttatc-tttttaattactttgcttaggttaatctgaaaagc-ttttttc------attccttaggcatacTCTTTTTGTGAACACAATTTTGGGTAGCAGCAGGGTATAGGTGATAAAAAAAA-TTTTGCTATAGAGAAA-----AAGGTGAAAATTGTGGATATGTCTAATTTTTAAAATATTGGCTTATATAGTTAGAATTCTGACTAGTTTGCTTAGTGACTAGCTGTCTCAATAATCAGGAAGTAAGGTTGAACAAAAATAAATTGGTTTC-AAAGCTTAGAATTTGTCTAGAGAATGAAGACCTATATTTTCAACGTATCTACTT-GAGTTTGATTGCCAAAGTTGAAGTCCCTT--T-AAAATCCTAGTCTAGGAAAATATTTTTATGCAATAGGAGAGGAAGACAAATGGGATACTCAACTATAATAGTGT-ACTT-ATAACAGGAATGAGAGTCTGTTCAGGAAACAAGTA----TTCTTGGTTGAAATGCATCTGTTGGTAAAATACTATTGACCACTTGAGAAAGAATAGTAGAGAAAATATTT-------TCAAGCAAATCAATATAATTATTTTTT---ACCTTCCTAGAAATCTTT-AAAAA---ATAAAAC-----AAAGTGACTCAGTGGGACTTATCTTATGAGAA-ACATGAGATATGTAAAAAGATATAGTGGTAGAAAATAAAAACAAATTGCTTCCTGGGATGAAGTCATGGGGACTC-TGGCAGATGGTTTC-TAAATCAATAGCTTCCTTTACAGAGTCACATGCCA--TAGAAGTTAGTATAAATATAGATTGTAATATACTCTTTTATTTTT-ATTAGCATTATTAAAAGTTTTGGTTTGAAACCTATGGGCATTTGGAAGAAGTTT--CT i micMur3.chr12 I 3 I 40 s proCoq1.NW_012147189v1 636827 871 - 10520994 AAAACATGTCTGTTTTACTaa--atttatcttttttaattactttgcttaggttaatctgaaaagt-ttttttc------atcccctgagcatacTCTTTCTGTGCACACAATTTTGGGTAGTAGCAGGGTATAGGTGATAAAAAAAATTTTTACCATAGAGAAA-----ATGGTGAAAATTGTGAGTATATCTAATTTTTAAAATACTAGC-TATATAGTTAGAATTATGACTAG-TTGCTTAGTGACTAGCTGTCTCAATAATTGGGAAGTAAGGTTGAGCAAAAACACATTGGTTTC-AAAGCTTATAATTTGTCTAGAGAATGAAGACCTGTATCTTCAACATATCTACTT-GAGTTTGATTGACAAAGTTCAAGTCCCTT--C-AACATCTTACCCTAGGAAAATGTTTTTATGCAATAGGAGAGGAAGACAAATGGGTTACTCAACGATAATAGTGT-ACTT-ATAACAGGAATGAGA----GTTCAGGAAACAGGTATTC-TTCTTGGTTGAAGTGCATCTGTTAGTAAAATACTGTTGACCACTTGAGAAAGAATAGTAGAGAAAATATTTAGAAATATAGAGAAAATCAATATAATTATTTCTT---ACCTTCCTAGAAATGTTTAAAAAA---ATAAAAC-----AAAGTGACTCAGTGGGACTCATAAC-TGAGAA-CCATGAGATACATAAAAAGGTATAGTGATAGAAAATAAAAACAAATTGCTTCCTGCG-TGAAGTCACAGAGACTC-TGGCAGATGGTTTC-CAAATCAATAGCTTCCTTTTCAGAGTCACATGTGA--TAGAAGTTAGTGTAAATATAGATTGTAATATACTCTTGTATTTTT-ATTAGCAATATTAAACCTTTTGGGTTGAAACCTACAGGCATTTTGAAGAAGTTT--CT i proCoq1.NW_012147189v1 I 34 I 2 s otoGar3.GL873536 1331021 854 - 29863360 AAAGCATGT-TGTTTTACTAA--ATTTATA-TTTTTAATTACTTTGCTGAGGTTAATCTGAAAAGG-TTTTTTTTATTTAATCCCCTGAGCATACTTTTTCTGTGCACACAATTTTGGGTATCAGTAGGGTATGAATGATAAATAAAAATTTTGCTCTATAGGAA-----AAGGTAAAAATTGTGGATATATATGATTTTTAAAATATTGGC-TGGATAGTTAGGATTTTGACAAG-TTGCTTAATGACTA----TCTTAACAATTGGGAAGTAAGGTTGAAGAAAAATCAATGGGTTTC-AAAGCTTAGAATTTGTCTAGAGAATGAAGACTTTTATCTTCAGTATATCTACTT-GAGTTTGAGTGCCAAACTTCAAATCCCTT----AAAATCTGAGCCTAGGACAATATTTTTATGTAATAGGAGAGGAAGACAGATGTGTTACTCATCCATAATAGTAC-ACTTAATAACCAGAGTGAGAGACAGTTCAGGGAATACGCATTC-TTCTTG------------------GTAAAATACTATTGACCGCTTTAGAAAGAATAGTAGAGAAAACATTT-------TCAAACAAACTAATAGCCTTTTTTTCTTTAACTTTCCTAGAAATGTTT-AGAAA---ATGAAACAAAGGAAAGTGGCTC-TTGAGACTCTTGCC-TGAGAG-CCATGCGGTGCATAAAAATCTATAGTGGTAGAAATTAAAAACAAATGGCTTCCTGGGGTGAAGTCACC-AGACTC-TGGCAGGTGGTTTC-CAAATCAGTAGCTTCCTTTTCAGTTTCACATGTGA--TGGAAGTCAGTGTTAATATAGATTATA--ATACTTTTATATGTTT-ATTAGCATTATTAAACCTCTTGGTTTGAAACCTAGGGGCATTTTGAAGAAGTTC--CT i otoGar3.GL873536 I 3 I 2 s canFam3.chr3 14339808 813 + 91889043 AAAACATGTCTCttttatttactatttata-tatttaattaCTT-----AGGTTGACAT-AAAAAC-TTTTTTC------ATTCCT---------------TGCATACACAGTTTTGGGTAACAGCAGAGTATGGGTGATTGGGAAGA-TGTTGCTGTAGAT-AA-----AAAGTGAAAATTTTGAATATATCCAAGTTTTAGAATACTGAC-TGTATAATTAGGATTCTGACTTG-TTGGACAGTAACTA----TTTCAATAATTGGGAAGTGAAGTTAAAT---------TTCATTTC-AAAGTTTGGAACTTGTCTAGGAAATGAATGTTT-TATTTTTACTATAGCTACTTGGAGTTTGATTCCCAAAGCACAAATCCCTT--TAAAAATCTTAGCCTAGGAAGATTTTTTTAAGCAATAGGAGGGAAAGACAA--TGTTTGCTCAACTGTAGTAATGTAACTT-GTAACAGGGGTTGGGGTTGGTTCTGGAAACATTTATTCATTCTTCGTGG--------TTGTTAGTGACATATTAGTGACCATTTTAAAGAGGATAGTAGAGAAAATATTT-------TCAAGCAAACCAATATACTTATTTTT----AACTTTCTTGAAA--------AAA---ATGAAGCAAAGGAAAGCAACTCAAAGGGACTCATAAC-TGAGAG-CCATGGGTTGGCTGAGAAGGTGTAGGCATAGAAAATAAAAACAAATTTCTCCTCTGGGTAAAAGGATAAAGACTC-CGGCAGATGGCTTCTTAGATTAATGGCCTCCTTTGCACATTCATAAGTAGAATAGAAAGTGGTGT----ATAGATTGGAATATATTGTTGTATTTTT-GTCATCATTATTAAAACTTCTT-TTTGAAACTTAGGGGCATTTAGAAG---------- i canFam3.chr3 I 3 C 0 s dasNov3.JH570378 1272362 846 - 11655695 AATATATGTCTATTTTACTAA--ATTTA---TTTATATTTACTTTGCTCAGA-----------------TTTTC------ATTTTCTGGACATAAATATTTGGTGCACACAAATTTGGGTAGCAGCAGGATGTGGATGATAGGAAAAA-TTTTGCCATAGAGAAATTCCTAAAGTGAAAATTGTAGCTATATCAAAATTTTAAAATG-TAGC-TGTATAGTTAAGATTCTGACTTA-TTGCATAGTAACTTGCTCCCTCAACAATTAGTAAGAAAGGCTGAACAAAAATAAATTGATTTC-AGAGCCTCGGATTTGTTTAGAGAATGAAGACTTATATCACCAATATAGCTACTTGGAGTTTGATT-CCACAGCTCAAGTTCCTT--T-AAAATCTTAAGTAAAAAAAAAATTTTTATGCAGTATGAGGGGAATTCAAATACACTAATCAACTATAATAATGC-ACTG---AACAGGGGTGAGAACTGATTCAGGAAACATATATTC-TTCTTGGTTTAAATGTATTTGTTAGTGACATACTATTCACCACTTGAGAAAGAATAGTAGAGAAAATCTCT-------TCAAGTAAATCAACGTAATTATTTTT----ACCTCCCTGAAAATGTTTTAAAAA---GT----TAAAGTAAAGTAACTCCTTGGGACTTATAGC-TGAAAGCCCATACAGTGAATAAGAAGATGAAGTGTTAAAAATT-----CAGATTGCTTTTTTAGGTGAAATCATGAAAACTCTTGGCAGGTAGCTTCTTGGATCAATAGCCTCCTTCCCAGATTCACTGGTGA--TCAGAGATAGTGTAAATATAGTTTGCCATATACTCTTAGAT-TTTAATTTGTATTATTAGAACT--CTGTTTGAACCCT-GGGACATTTTGAAGAAGTCT--CC i dasNov3.JH570378 C 0 C 0 a score=300488.000000 s hg38.chr5_GL383530v1_alt 79753 35 + 101241 -TTTTAAAAAA--TTTATTCTGC-----TTAAACT---GTCTAAAT s panTro5.chr5 20313637 35 + 181907262 -TTTTAAACAA--TTTATTCTGC-----TGAAACT---GTCTAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20325966 35 + 183735486 -TTTTAAAAAA--TTTATTCTGC-----TGAAACT---GTCTAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4812638 40 - 13748885 -TTTTAAAAAA--TTTATTCTGCTTAAATTAAACT---GTCTAAAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53845188 40 - 163208435 -TTTTAAAAAA--TTTATTCTGCTTAAATTAAACT---GTCTAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868072 40 - 180051392 -TTTTAAAAAA--TTTATTCTGCTTAAATTAAATT---GTCTAAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87972478 40 - 181584905 -TTTTAAAAAA--TTTATTCTGCTTAAATTAAATT---GTCTAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1199879 40 - 8785636 -TTTTAAAAAA--TTTATTCTGCTTAAATTAAATT---GTCTAAAT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1663557 40 + 27333823 -TTTTAAAAAA--TTTATTCTGCTTAAATTAAATT---GTCTAAAT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1933182 40 - 91010382 -TTTTAAAAAA--TTTATTCTGCTTAAATTAAATT---GTCTAAAT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2052636 40 + 5179401 -TTTTAAAAAA--TTTATTCTGCTTAAATTAAATT---GTCTAAAT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7755389 40 - 21726897 -TTTTAAAAAA--TTTATTCTGCTTAAATTAAATT---GTCTAAAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112564936 38 + 204313951 -TTTTTTAAAT--TTTAGTTTGCTTGAATTTTA-----GTCTAAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45018396 38 + 71252344 -ttttttaatt--tttattttGCTTGAATTTTA-----GTCTAAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 377478 38 - 1393929 -TTTTTAAAAT--TTTATTTTGCTTGAATTTTA-----GTCTAAGT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1449940 38 - 15889662 -TTCTTAAAAT--TTTATTTTGCTTGAATTTTA-----GTCTAAGT i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 637700 26 - 10520994 -TTTCAAAAGT--TTTATTCTCTCTAAAT----------------- i proCoq1.NW_012147189v1 I 2 I 7 s otoGar3.GL873536 1331877 43 - 29863360 -TTTCAAAAGT--TTTATTCTCTCTCAATTAAGTTGTAGTCTAAAC i otoGar3.GL873536 I 2 C 0 s canFam3.chr3 14340621 29 + 91889043 -TTTTAGAAAAGTTTTATTCTGCTTACATT---------------- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1273208 25 - 11655695 ttttttaaagt--tttat--tgtttaaat----------------- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84848283 40 + 108143057 I a score=274933.000000 s hg38.chr5_GL383530v1_alt 79788 28 + 101241 ACAaatgggt---acaaatatatagttagat s panTro5.chr5 20313672 28 + 181907262 ACAaatgggt---acaaatatatagttagat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326001 28 + 183735486 ACAaatgggt---acaaatatatagttagat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4812678 28 - 13748885 ACAaatgggt---acaaatatatagttagat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53845228 28 - 163208435 ACAaatgggt---acaaatatatagttagat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868112 28 - 180051392 ACAaatgggt---acaaatatatagttagat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87972518 28 - 181584905 ACAaatgggt---acaaatatatagttagat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1199919 28 - 8785636 ACAaatgggt---acaaatatatagttagat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1663597 28 + 27333823 ATAaatgggt---acaaatatatagttagat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1933222 28 - 91010382 ACAaatgggt---acaaatatatagttagat i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2052676 28 + 5179401 ACAaatgggt---acaaatatatggttagat i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7755429 28 - 21726897 ACAaatgggt---acaaatatatagttagat i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112564974 28 + 204313951 ACAaattggt---acaaatatatagttagat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45018434 28 + 71252344 ACAaatgggt---acaaatatgtagttagat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 377516 28 - 1393929 ACAaatgggt---acaaatatatagttagat i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1449978 28 - 15889662 ACAAGtgggt---acaaatatatagttaaat i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1331920 31 - 29863360 ACAGATATGTTTAACATACACATATTTGAAT i otoGar3.GL873536 C 0 I 9089 s canFam3.chr3 14340650 11 + 91889043 ----------------AAGTTTTAGTC---- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1273233 11 - 11655695 --------------taaatttttat------ i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84848283 40 + 108143057 I e proCoq1.NW_012147189v1 637726 7 - 10520994 I a score=354536.000000 s hg38.chr5_GL383530v1_alt 79816 37 + 101241 caaaggaataggatttgatagcacaacaggatgacta s panTro5.chr5 20313700 37 + 181907262 caaaggaataggatttgatagcacaacaggatgacta i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326029 37 + 183735486 caaaggaataggatttgatagcacaacaggatgacta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4812706 37 - 13748885 caaaggaataggatttgatagcacaacaggatgacta i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53845256 37 - 163208435 caaaggaataggatttggtagcacaacaggatgccta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868140 37 - 180051392 caaaggaataggatttgatagcacagcaggatgacta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87972546 37 - 181584905 caaaggaataggatttgatagcacagcaggatgacta i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1199947 37 - 8785636 caaaggaataggatttgatagcacagcaggatgacta i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1663625 37 + 27333823 caaaggaataagatttgatagcacagcaggatgacta i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1933250 37 - 91010382 caaaggaataggatttgatagcacagcaggatgacta i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2052704 37 + 5179401 caaaggaataggatttgatagcacagcaggatgacta i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7755457 37 - 21726897 caaaggaataggatttgatagcacagcaggatgacta i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565002 37 + 204313951 caaaggcatagaacttgatagcactacaggatgacta i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45018462 37 + 71252344 caaaggtatagaacttgatagcacaacaggatgacta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 377544 37 - 1393929 caaaggtatagaacttgatagcacatcaggatgacta i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1450006 37 - 15889662 caaaggtatagaacttgatagcacaacaggatgacta i aotNan1.NW_018506370v1 C 0 C 0 s dasNov3.JH570378 1273244 1 - 11655695 ----------------------------------c-- i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14340661 0 + 91889043 C e micMur3.chr12 84848283 40 + 108143057 I e proCoq1.NW_012147189v1 637726 7 - 10520994 I e otoGar3.GL873536 1331951 9089 - 29863360 I a score=32062.000000 s hg38.chr5_GL383530v1_alt 79853 3 + 101241 tag s panTro5.chr5 20313737 3 + 181907262 tag i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326066 3 + 183735486 tag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4812743 3 - 13748885 tag i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53845293 3 - 163208435 tag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868177 3 - 180051392 tag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87972583 3 - 181584905 tag i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1199984 3 - 8785636 tag i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1663662 3 + 27333823 tag i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1933287 3 - 91010382 tag i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2052741 3 + 5179401 tag i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7755494 3 - 21726897 tag i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565039 3 + 204313951 cag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45018499 3 + 71252344 cag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 377581 3 - 1393929 cag i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1450043 3 - 15889662 cag i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 637733 3 - 10520994 TAG i proCoq1.NW_012147189v1 I 7 C 0 e canFam3.chr3 14340661 0 + 91889043 C e micMur3.chr12 84848283 40 + 108143057 I e dasNov3.JH570378 1273245 0 - 11655695 C e otoGar3.GL873536 1331951 9089 - 29863360 I a score=583614.000000 s hg38.chr5_GL383530v1_alt 79856 49 + 101241 taaacaCAGATA-TTTTTCATGTAAGCCCTTT-GTACAGATACTTGAAGAG s panTro5.chr5 20313740 49 + 181907262 taaacaCAGATA-TTTTTCATGTAAGCCCTTT-GTACAGATACTTGAAGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326069 49 + 183735486 taaacaCAGATA-TTTTTCATGTAAGCCCTTT-GTACAGATACTTGAAGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4812746 49 - 13748885 taaacaCAGATA-TTTTTCATGTAAGCCCTTT-GTACAGATACTTGAAGAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53845296 49 - 163208435 taaacaCAGGTA-TTTTTCATGTAAGCCCTTT-GTACAGATACTTGAAGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868180 46 - 180051392 taaacaca--ta-ttttTCATGTAAGCCCTTT-GTACAGATACTT-AATAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87972586 46 - 181584905 taaacaca--ta-ttttTCATGTAAGCCCTTT-GTACAGATACTT-AATAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1199987 46 - 8785636 taaacaca--ta-ttttTCATGTAAGCCCTTT-GTACAGATACTT-AATAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1663665 46 + 27333823 taaacaca--ta-ttttTCATGTAAGCCCTTT-GTACAGATACTT-AATAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1933290 47 - 91010382 taaacaca--ta-ttttTCATGTAAGCCCTTT-GTACAGATACTTGAATAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2052744 46 + 5179401 taaacaca--ta-ttttTCATGTAAGCCCTTT-GTACAGATACTT-AATAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7755497 47 - 21726897 taaacata--ta-ttttTCATGTAAGCCCTTT-TTACAGATACTTGAATAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565042 50 + 204313951 taagcaCAGATATTTTTTCATGTAAGCTCTTT-GTATACATACTTGAATAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45018502 50 + 71252344 taagcaCAGATATTTTTTCATGTAAGCCCTTT-GTATACATACTTGAATAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 377584 50 - 1393929 taagcaCAGATATTTTTTCATGTAACCCCTTT-GTATACATACTTGAATAG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1450046 50 - 15889662 taagcacggatattttttcatataAGCCCTTT-GTATATATACTTGAATAG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84848323 49 + 108143057 TAAACATAGATA-TGTTTAATGTGATCCCTTT-GTACACATATTTGAATGG i micMur3.chr12 I 40 C 0 s proCoq1.NW_012147189v1 637736 49 - 10520994 TAAACACAGATA-TGTTTAATGTGATCCCTTT-GCACAGATATTTGAATGG i proCoq1.NW_012147189v1 C 0 C 0 s canFam3.chr3 14340661 50 + 91889043 TGAACACAGATG-TTTTTAATGTGAGCCCTTTGGTACTGATATTTAAATAG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1273245 46 - 11655695 taaacaca--ta--ttttaatataaaCCCTTT-ATACAGATATTTGAATAG i dasNov3.JH570378 C 0 C 0 e otoGar3.GL873536 1331951 9089 - 29863360 I a score=1786317.000000 s hg38.chr5_GL383530v1_alt 79905 139 + 101241 AGTTCCCTGGCCTATTTTTATATATGACGGTGGATAGA-TTTTATGTTTTCATTAT-TAAA--GTAAATTGGACAAAACAGAGAA----TAGTTAGCAATTTATATTTGTTTTTATATATTATGTGCTTTGATCTTCATTATCAAAT s panTro5.chr5 20313789 139 + 181907262 AGTTCCCTGGCCTATTTTTATATATGACGGTGGATAGA-TTTTATGTTTTCATTAT-TAAA--GTAAATTGGACAAAACAGAGAA----TAGTTAGCAATTTATATTTGTTTTTATATATTATGTGCTTTGATCTTCTTTCTCAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326118 139 + 183735486 AGTTCCCTGGCCTATTTTTGTATATGACGGTGGATAGA-TTTTATGTTTTCATTAT-TAAA--GTAAATTGGACAAAACAGAGAA----TAGTTAGCAATTTATATTTGTTTTTATATATTATGTGCTTTGATCTTCATTCTCAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4812795 139 - 13748885 AGTTCCCTGGCCTATTTTTATATATGGCGGTGGATAGA-GTTTATGTTTTCATTAT-TAAA--ATAAATTGGACAAAACAGAGAA----TAGTTAGCAATTTATATTTGTTTTTATATATTATGTGCTTTGATCTTCATTATCAAAT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53845345 139 - 163208435 AGTTCCCTGGTCTATTTTTATATATGACGGTGGATAGA-TTTTATGTTTTCATTAC-TAAA--GTAAATCGGACAAAACAGAGAA----TAGTTAACAATTTATATTTGTTTTTATATATTATGTGCTTTGATCTTCAGTATCAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868226 134 - 180051392 AGTTCCCTGGCCTATTTTTATATATGATGGTGGGTAGA-TTTTATGTTTTCATTAT--------TAAATTGGGCAAAATAGAGAA----TAGTTAACAATTTATATTTGTTTTTATATATTATGTGCTTTGATCTTCAGTGTCAAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87972632 134 - 181584905 AGTTCCCTGGCCTATTTTTATATATGATGGTGGGTAGA-TTTTATGTTTTCATTAT--------TAAATTGGGCAAAATAGAGAA----TAGTTAACAATTTATATTTGTTTTTATATATTATGTGCTTTGATCTTCAGTATCAAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200033 134 - 8785636 AGTTCCCTGGCCTATTTTTATATATGATGGTGGGTAGA-TTTTATGTTTTCATTAT--------TAAATTAGGCAAAATAGAGAA----TAGTTAACAATTTATATTTGTTTTTATATATTATGTGCTTTGATCTTCAGTATCAAAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1663711 134 + 27333823 AGTTCCCTGGCCTATTTTTATATATGATGGTGGGTAGA-TTTTATGTTTTCATTAT--------TAAATTGGACAAAATAGAGAA----TAGTTAACAATTTATATTTGTTTTTATATATTATGTGCTTTGATCTTCAGTATCAAAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1933337 134 - 91010382 AGTTCCCTGGCCTATTTTTATATATGATGGTGGGTAGA-TTTTATGTTTTCATTAT--------TAAATTGGACAAAATAGAGAA----TAGTTAACAATTTATATTTGTTTTTATATATTATGTGCTTTCATCTTCAGTATCAAAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2052790 134 + 5179401 AGTTCCCTGGCCTATTTTTATATATGATGGTGGGTAGA-TTTTATGTTTTCATTAT--------TAAATTGGACAAAATAGAGAA----TAGTTAACAATTTATATTTGTTTTTATATATTATGTGCTTTGATCTTCAGTATCAAAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7755544 134 - 21726897 AGTTCCCTGGCCTATTTTTATATATGATGGTGGGTAGA-TTTTATGTTTTCATTAT--------TAAATTGGACAAAATAGAGAA----TAGTTAACAATTTATATTTGTTTTTATATATTATGTGCTTTGATCTTCAGTATCAAAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565092 134 + 204313951 AGTTCCTTGGCCTATTTTCATATATAATGATGGATAGA-TTTTATGTTTTCATTAT-TAAA--ATAAAATGGACAAAATAAAGAA----TGGTTAACaattta-----ttttttatatattatGTGCTTTGATCTTGAGTATCAAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45018552 135 + 71252344 AGATCCTTAGCCTATTTTCATATATAATAATGGATAGA-TTTTATGTTTTTGTTAT-TAAA--ATAAAATGGACAAAATAAAGAA----TAGTTAACaattta----tttttttatatattatGTACTTTGATCTTGAGTATCAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 377634 132 - 1393929 AGATCCTTGGCCTATTTTCATATATAATGATGGATAGA-TTTTATGTTTTCATTAT-TAAA--ATAAAATGGACAAAATAAAGAA----TGGTTAACAATT-------TTTTAAATATATTATGTGCTTTGATCTTGAGTATCAAAT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1450096 133 - 15889662 AGTTCCTTGGCCTATTTTCATATATAATGATGGATAGATTTTTATGATT---TTAT-TAAA--ATAAAATGGACAAAATAAAGAA----TGGTTAACAATTTA----TTTTTTTATATATTATGTGCTTTGATCTTTAGTATCAAAT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84848372 141 + 108143057 AGTTCCCTGGCCTAATTTAATATATAATGATGGGTAGA-TTTCATGTTTTCATTAT-TAAA--GTAAAATGGAAAATATAGAGAACACATAGTTAAGAATTTTTATT--TTTTTATATGGTATGTGCTTTGTTATGCAATATCAAAT i micMur3.chr12 C 0 I 18 s proCoq1.NW_012147189v1 637785 139 - 10520994 AGTTTCCTGGCCC-TTTTAATACATAATGATGGGTAGA-TTTCATGTTTTCATTAT-TAAA--GTAAAATGGAAAA---AGAGAACATGTAGTTAAGAGTTTGTATTTGTTTTTGTATGTTATGTGCTTTGATCTGTAGTATCAAAT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1341040 142 - 29863360 AGTTCCCTGACCTATTTTAATATATAATAATGGGTAGA-TTTTGTGTTTTAATTAT-TAAA--GTAAAATGGAAAAAATAGATAAAATGGAGTTAACAGCTTGTATTTGGTTTTG-ATATCATGTGTTTAGATCTATAATATCAACC i otoGar3.GL873536 I 9089 C 0 s canFam3.chr3 14340711 134 + 91889043 CATTCCCTGGTATATTT-------TAATGATGAGTAGA-TTTTATGTTTTCATTATAAAAA--ATAAAATGGAAAGAATAGAGAATATTTACTTAACAATTTACATTTATTTCAGTCTATT---TACTTTGATCTTCAGAATCAAAT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1273291 139 - 11655695 AGTTCC-TGGCCTGTTTTAATGTATCATGATGTATAGA-TGTTATGATTTAATTAT-TAAAATGTAAAATGGAAGAAATAGAGAA----TATTTGTCAATTTGTATTTATTTTTCTTT-TTACGTACTTTGATCTCCATTGCCAAAT i dasNov3.JH570378 C 0 C 0 a score=164698.000000 s hg38.chr5_GL383530v1_alt 80044 11 + 101241 AACTTGTAATA s panTro5.chr5 20313928 11 + 181907262 AACTTGTAATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326257 11 + 183735486 AACTTGTAATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4812934 11 - 13748885 AACTTGTAATA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53845484 11 - 163208435 AACTTGTAATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868360 11 - 180051392 AACTTGTAATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87972766 11 - 181584905 AACTTGTAATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200167 11 - 8785636 AACTTGTAATA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1663845 11 + 27333823 AACTTGTAATA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1933471 11 - 91010382 AACTTGTAATA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2052924 11 + 5179401 AACTTGTAATA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7755678 11 - 21726897 AACTTGTAATA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565226 11 + 204313951 AACCTGTAATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45018687 11 + 71252344 AACCTGTAATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 377766 11 - 1393929 AACCTATAATA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1450229 11 - 15889662 AACCTGTAATA i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 637924 11 - 10520994 AACTTGTAATA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1341182 11 - 29863360 AGCTTTTAATA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14340845 11 + 91889043 AACTTGTAATA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1273430 11 - 11655695 AAGTAGTAATT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84848513 18 + 108143057 I a score=692597.000000 s hg38.chr5_GL383530v1_alt 80055 57 + 101241 AGGTCATGAGAATTCATAAACTAGCTTAAAATTATTTAATT-----GTACAAGTCTTTTCTT s panTro5.chr5 20313939 57 + 181907262 AGATCATGAGAATTCATAAACTAGCTTAAAATTATTTAATT-----GTACAAGTCTTTTCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326268 57 + 183735486 AGATCATGAGAATTCATAAACTAGCTTAAAATTATTTAATT-----GTACAAGTCTTTTCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4812945 52 - 13748885 AGGTCATGAGAATTCATAAACTAGCTTAAAATTATTTAATT-----GTACAAG-----TCTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53845495 52 - 163208435 AGGTTGTGAGAATTCATAAACTAGCTTAAAATTATTTAATT-----GTACAAG-----TCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868371 52 - 180051392 AGGTTGTAAGAATTCATAAACTAGCTTAAAATTATTCCATT-----GTACAAG-----TCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87972777 52 - 181584905 AGGTTGTAAGAATTCATAAACTAGCTTAAAATTATTCCATT-----GTACAAG-----TCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200178 52 - 8785636 AGGTTGTAAGAATTCATAAACTAGCTTAAAATTATTCCATT-----GTACAAG-----TCTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1663856 52 + 27333823 AGGTTGTAAGAATTCATAAACTAGCTTAAAATTATTCCATT-----GTACAAG-----TCTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1933482 52 - 91010382 AGGTTGTAAGAATTCATAAACTAGCTTAAAATTATTCCATT-----GTACAAG-----TATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2052935 52 + 5179401 AGGTTGTAAGAATTCATAAACTAGCTTTAAATTATTCCATT-----GTACAAG-----TCTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7755689 52 - 21726897 AGGTTGTAAGAATTCATAAACTAGCTTAAAATTATTCCATT-----GTACAAG-----TCTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565237 57 + 204313951 AAGTTGTGAGAAGTTATAAACTAGCTTAAAATTATTTAACT-----GTACAAGTCTTTTCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45018698 57 + 71252344 AAGTTGTGAAAATTTATAAACTAGCTTAAAATTATTTAATT-----GTACAAGTCTTTTCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 377777 57 - 1393929 AAGTTGTGAGAATATATAAAATAGCTTAAAATTATTTAATT-----GTACAAGCCTTTTCTT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1450240 57 - 15889662 AAGTTGTGAGAACTTATAAACTAGCTTAAAATTATTTAATT-----GTACAAGTCTTTTCTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84848531 51 + 108143057 AAGTTGTGAGAATTCATGAACTAGCTTAG------TTAATT-----GTACAAGACTTTTCTT i micMur3.chr12 I 18 C 0 s proCoq1.NW_012147189v1 637935 55 - 10520994 AAGTTGTGAGAATTTATGAACTAGCTTAG--TTATTTAATT-----GTACAAGACTTTTCTT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1341193 55 - 29863360 AAGTTATGAGAATTCGTGAACTAATTTAG--TCATTTAATT-----GTATAAGACTTTTCTT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14340856 62 + 91889043 AAGTTTTGGAGATTAGTGAACTAGCTATGAGCTATTTAACTATTTAGTTAAAGCTAtttttt i canFam3.chr3 C 0 I 202 s dasNov3.JH570378 1273441 55 - 11655695 AAATGGT--GAATTCATGAATTAGCTTAGAGTTATTTTACT-----TTACAAGATTTTTCTT i dasNov3.JH570378 C 0 C 0 a score=187435.000000 s hg38.chr5_GL383530v1_alt 80112 16 + 101241 TGTGTTTGACTGACTG-- s panTro5.chr5 20313996 16 + 181907262 TGTGTTTGACTGACTG-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326325 16 + 183735486 TGTGTTTGACTGACTG-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4812997 16 - 13748885 TGTGTTTGACTGACTG-- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53845547 16 - 163208435 TTCGTTTGACTGACTG-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868423 16 - 180051392 TGTGTTTGACTGACTG-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87972829 16 - 181584905 TGTGTTTGACTGACTG-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200230 16 - 8785636 TGTGTTTGACTGACTG-- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1663908 16 + 27333823 TGTGTTTGACTGACTG-- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1933534 16 - 91010382 TGTGTTTGACTGCCTG-- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2052987 16 + 5179401 TGTGTTTGACTGACTG-- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7755741 16 - 21726897 TGTGTTTGACTGACTG-- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565294 12 + 204313951 TGTGTTTGA----CTG-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45018755 12 + 71252344 TGTGTTTGA----CTG-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 377834 12 - 1393929 TGTGTTTGA----CTG-- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1450297 12 - 15889662 GGTGTTTGA----CTG-- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84848582 16 + 108143057 TATGTTTGGCTGACTG-- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 637990 16 - 10520994 TGTGTTTGGCTGACTG-- i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1341248 16 - 29863360 TGTGTTTGGCCGACTG-- i otoGar3.GL873536 C 0 C 0 s dasNov3.JH570378 1273496 18 - 11655695 TATGTTTGACTGATAGTG i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14340918 202 + 91889043 I a score=1471380.000000 s hg38.chr5_GL383530v1_alt 80128 99 + 101241 GTTTCACATTATTATCATATTGCTTCAAACCAAATATATAGGTTAAT---TTTCAACTCTAATGGAATTTGGCAGATTTAAG-ATTTTAGTTCTATAGAATAG s panTro5.chr5 20314012 99 + 181907262 GTTTCACGTTATTATCATATTGCTTAAAACCAAATATATAGGTTAAT---TTTCAACTCTAATGGAATTTGGCAGATTTAAG-ATTTTAGTTCTATAGAATAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326341 99 + 183735486 GTTTCACATTATTATCATATTGCTTAAAACCAAATATATAGGTTAAT---TTTCAACTCTAATGGAATTTGGCAAATTTAAG-ATTTTAGTTCTATAGAATAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4813013 99 - 13748885 GTTTCACATTATTATCATATTGCTTAAAACCAAATATATAGGTTAAT---TTTCAACTCTAATGGAATTTGGCAGATTTAAG-ATTTTAGTTCTATAGAATAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53845563 99 - 163208435 GTTTCACATTATTATCATATTGCTTAAAACCAAATATATAGGTTAAT---TTTCAACTCTATTGGAATTTTGCAGATTTAAG-ATTTTAGTTCTATAGAATAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868439 99 - 180051392 GTTTCACATTATTATCATATTGCTTGAAGCCAAATATATAGGTTAAT---TTTCAACTCTATTGGAATTGTGCAGATTTAAG-ATTTTAGTTCTATAGAATAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87972845 99 - 181584905 GTTTCACATTATCATCATATTGCTTGAAGCCAAATATATAGGTTAAT---TTTCAACTCTATTGGAATTTTGCAGATTTAAG-ATTTTAGTTCTATAGAATAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200246 99 - 8785636 GTTTCACATTATTATCATATTGCTTGAAACCAAATATATAGGTTAAT---TTTCAACTCTATTGGAATTTTGCAGATTTAAG-ATTTTAGTTCTATAGAATAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1663924 99 + 27333823 GTTTCACATTATTATCATATTGCTTAAAACCAAATATATAGGTTAAT---TTTCAACTCTATTGGAATTTTGCAGATTTAAG-ATTTTAGTTCTATAGAATAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1933550 99 - 91010382 GTTTCACATTATTATCATATTGCTTAAAACCAAATATATAGGTTAAT---TTTCAACTCTATTGGAATTTTGCAGATTTAAG-ATTTTAGTTCTATAGAATAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2053003 99 + 5179401 GTTTCACATTATTATCATATTGCGTAAAACCAAATATATAGGTTAAT---TTTCAACTCTATTGGAATTTTGCAGATTTAAG-ATTTTAGTTCTATAGAATAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7755757 99 - 21726897 GTTTCACATTATTATCATATTGCTTAAAACCAGATATATAGGTTAAT---TTTCAACTCTATTAGAATTTTGCAGATTTAAG-ATTTTAGTTCTATAGAATAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565306 99 + 204313951 GTTTCACATTATTATCATATTGCTTAAAACGAAATATATTGGTTAAT---TTTCAACTCCATTGGAATTTTGCAGATTCCAG-ATTTTAGTTCTTTAGAAGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45018767 97 + 71252344 GTTTCACATTATTATCATTTTGCTTAAAACGAAATATATTGGTTAAT---TTTCAACTC--TTGGAATTTTGCAGATTCCAG-ATTTTAGTTCTTTAGGATAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 377846 97 - 1393929 GTTTCACATTATTATCATATTGCTTAAAACGAAATATATTGGTTAAT---TTTTAACTC--TTGGAATTTTGCAGATTCCAG-ATTTTAGTTCATTAGAATAG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1450309 99 - 15889662 GTTTCACATTATTATCATATTGCTTAAAACGAAATATATTGGTTAAT---TTTCAACTCTATTGGAATTTTGCAGATTCCAG-ATTTTAGTTCTTTAGAATAG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84848598 99 + 108143057 GTTTCACATCATTATCATACTTAAGAAAACCAAATACATAGGTTAAT---TTTCAACTTTGTTGGAACTTTGCAGATTTCAG-ATTTTAATTCTATAGAACAG i micMur3.chr12 C 0 I 35 s proCoq1.NW_012147189v1 638006 99 - 10520994 GTTTCACATCATTATCATACTTCAGAAAACCAAATACATAGGTGAAT---TTTCAACTCTATTGGAACTTTGCAGATTTCAG-ATTTTAGTTCTATAGAATAG i proCoq1.NW_012147189v1 C 0 I 4 s otoGar3.GL873536 1341264 102 - 29863360 GTTTCACATCATTATCATACTTCAGAAAACCACATATATAGGTTAATTGGTTCCAACTTTATTGGAACTTTGCAGACTTCAG-ATTTTAATTCCATAGAATAG i otoGar3.GL873536 C 0 I 4 s canFam3.chr3 14341120 92 + 91889043 GTTTCATGCTGGTCTCATAC--CATAAAACCAAATATATAAGTTTAT---TTTCAAC---ACCGGAATTTTGAAGCTTTCCG-AATTTTAGTCCCTGGAAG-- i canFam3.chr3 I 202 C 0 s dasNov3.JH570378 1273514 97 - 11655695 GTTTCACAGCATTATCATACTATATAAAACCAAATATA-AGGTTAAT---TTTCAACTC--CTGGAATTTTATACACTTCAGAATTTTAGTTTCATAGAGTAT i dasNov3.JH570378 C 0 C 0 a score=218894.000000 s hg38.chr5_GL383530v1_alt 80227 26 + 101241 T-----TTCATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ s panTro5.chr5 20314111 26 + 181907262 T-----TTTATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326440 26 + 183735486 T-----TTTATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4813112 26 - 13748885 T-----TTTATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53845662 26 - 163208435 T-----TTTATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868538 26 - 180051392 T-----TTGATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87972944 26 - 181584905 T-----TTGATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200345 26 - 8785636 T-----TTGATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1664023 26 + 27333823 T-----TTTATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1933649 26 - 91010382 T-----TTTATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2053102 26 + 5179401 T-----TTTATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7755856 26 - 21726897 T-----TTTATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565405 30 + 204313951 TT-TTATTTATTTTGGG--------------------------------------------------------------------------TTCTTCATGTTGTT------------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45018864 30 + 71252344 TT-TTATTTATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 377943 30 - 1393929 TT-TTATTTATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1450408 30 - 15889662 TT-TTATTTATTTTGGG--------------------------------------------------------------------------TTGTTCATGTTGTT------------ i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 638109 26 - 10520994 -----ATTTATTTTAGG--------------------------------------------------------------------------TGGCTCATGATGTT------------ i proCoq1.NW_012147189v1 I 4 I 5 s otoGar3.GL873536 1341370 26 - 29863360 -----ATTTACTTGGGG--------------------------------------------------------------------------TTGCTCATTATAAA------------ i otoGar3.GL873536 I 4 I 2 s canFam3.chr3 14341212 28 + 91889043 -TTTTATTTCTTTTTGG--------------------------------------------------------------------------TT--TCATGTTGTC------------ i canFam3.chr3 C 0 I 5 s dasNov3.JH570378 1273611 115 - 11655695 --TTTATTTATTTTTGGGCACTGTTTGAGAATAAACCAAACTGTTGATTTAGAGATATTTTTCTAAAGAAAAATACCTTTCACTGGAATTTTGACTCTTGCTGCCTTGTCACATGCA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84848697 35 + 108143057 I a score=1562969.000000 s hg38.chr5_GL383530v1_alt 80253 119 + 101241 AAAAGTTAGTTTTTAAACTGTATCAAATATCTGTATTGTAAAT----CT---CTTCTATCAAGTGTCTTCTCAAATGTACATCAAATAGCAC---------TTATA-------TAATGTGTGGAATATACTTTATGTTTTAG s panTro5.chr5 20314137 119 + 181907262 AAAAGTTAGTTTTTAAACTGTATCAAATATCTGTATTGTAAAT----CT---CTTCTATCAAGTGTCTTCTCAAATGTACATCAAATAGCAC---------TTATA-------TAATGTGTGGAATATACTTTATGTTTTAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326466 119 + 183735486 AAAAGTTAGTTTTTAAACTGTATCAAATATCTGTATTGTAAAT----CT---CTTCTATCAAGTGTCTTCTCAAATGTACATCAAATAGCAC---------TTTTA-------TAATGTGTGGAATATACTTTATGTTTTAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4813138 119 - 13748885 AAAAGTTAGTTTTTAAACTGTATCAAATATCTGTATTGTAAAT----CT---CTTCTATCAAGTGTCTTCTCAAATGTACATCAAATAGCAC---------TTATA-------TAATGTGTGGAATATACTTTATGTTTTAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53845688 119 - 163208435 AAAAGTTAGTTTTTAAACTGTATCAAATATCTGTATTGTAAAT----CT---CTTCTATCAAGTGTCTTCTCAAATGTACATCAAATAGCGC---------TTATA-------TAATGTGTGGAATATACTTTATGTTTTAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868564 119 - 180051392 AAAAGTTAGTTTTTAAGCTGTATCAAATATCTGTATTGTAAAT----CT---CTTCTGTCAAGTGTCTTCTCAAATGTACATCAAATAGCAC---------TTATA-------TAATGCATGAAATATACTTTATGTTTTAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87972970 119 - 181584905 AAAAGTTAGTTTTTAAGCTGTATCAAATATCTGTATTGTAAAT----CT---CTTCTGTCAAGTGTCTTCTCAAATGTACATCAAATAGCAC---------TTATA-------TAATGCATGAAATATACTTTATGTTTTAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200371 119 - 8785636 AAAAGTTAGTTTTTAAGCTGTATCAAATATCTGTATTGTAAAT----CT---CTTCTGTCAAGTGTCTTCTCAAATGTACATCAAATAGCAC---------TTATA-------TAATGCATGAAATATACTTTATGTTTTAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1664049 119 + 27333823 AAAAGATAGTTTTTAAGCTGTATCAAATATCTGTATTGTAAAT----CT---CTTTTATCAAGTGTCTTCTCAAATGTACATCAAATAGCGC---------TTATA-------TAATGCATGAAATATACTTTATGTTTTAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1933675 119 - 91010382 AAAAGCTAGTTTTTAAGCTGTATCAAATATCTGTATTGTAAAT----CT---CTTTTATCAAGTGTCTTCTCAAATGTACATCAAATAGCGC---------TTATA-------TAATGCATGAAATATACTTTATGTTTTAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2053128 119 + 5179401 AAAAGATAGTTTTTAAGCTGTATCAAATATCTGTATTGTAAAT----CT---CTTTTATCAAGTGTCTTCTCAAATGTACATCAAATAGCTC---------TTATA-------TAATGCATGAAATATACTTTATGTTTTAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7755882 119 - 21726897 AAAAGTTAGTTTTTAAGCTGTATCAAATATCTGTATTGTAAAT----CT---CTTCTATCAAGTGTCTTCTCAAATGTACATAAAATAGCTC---------TTATA-------TAATGCATGAAATATATTTTATGTTTTAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565435 128 + 204313951 AAAAGTTAGTTTTTAAACTGTACTAAATATTGGTATGGTAAAT----CT---CTTCTGACAAGCGTCTTCTCAAATACACATCAAATACCACTATATAATGTTATA-------TAATGTGTGAAATATACTTTATGTTTCAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45018894 123 + 71252344 AAAAGTTAGTTTTTAAACTGTACTAAATATTGATATGGTAAAT----CT---AT-----CAAGTGTCTTCACAAATACACCTCAAATAGCACTATATAATGTTATA-------TAATGTGTGAAATATGCTTTATGTTTCAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 377973 128 - 1393929 AAAAGTTAGTTTTTAAACTGTACTAAATATTGGTATGGTAAAT----CT---CTTCTATCAAGTGTCTTCTCAAATACACATCAAATAACACTATATAATGTTTTA-------TAATGTGTGAAATATACTTTATGTTTCAG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1450438 128 - 15889662 AAAAGTTAGTTTTTAAACTGTACTAAATATTGGTATGGTAAAT----CT---CTTCTATCAAGTGTCTTCTCAAATACACATCAAATAGCACTATATAATGTTATA-------TAATGTCTCAAATATACTTTATGTTTCAG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84848732 123 + 108143057 AAAAGTTACTTCTCAAACTTTGTCGACTATCCATGTTGTAAATTTAACT---CTTCTATCGAGTCTCTTCTCAAATATATATCAAATGGCAC---------TTATA-------TAATGTGTGAAACATGCTTTGTGttttag i micMur3.chr12 I 35 I 563 s proCoq1.NW_012147189v1 638140 122 - 10520994 AAATGTTAATTCTTGAACTTTATCGAGTATCCATGTTGTAAATCTATCT---CTTCTTTCAAGTCTCTTCTCAAATATATATCAAA-AACAC---------TTATA-------TAATGCATGAAACATGCTTTgtgttttag i proCoq1.NW_012147189v1 I 5 C 0 s otoGar3.GL873536 1341398 85 - 29863360 AAAAGTTAATTCTCAAACTTTA------------------------------------TCAAGTCTATTCTTAAATATATATTAAAAAGCAC---------TT------------ATGCATAAAATATGCTTTGTGTTTTAG i otoGar3.GL873536 I 2 C 0 s canFam3.chr3 14341245 129 + 91889043 AAAAGTTAATTCTCAAACTTTATCAAGTATCCATATAGTAAAT----CTGTCTTTCTATCAAGTCTTTCCCCAAATATGCATCAAATAGCAT---------GCATACAATACTTAATACATAGAATATATTTTgcattttag i canFam3.chr3 I 5 C 0 s dasNov3.JH570378 1273726 102 - 11655695 AAAAATTAATTCTCAATTTTTATCAAGAATCCATATAGT--AT----CT---CTTCTATAAAGTCTTTCCTCCAAtatataccaagtagcat---------ttatg-------taataggc--------ttttat------- i dasNov3.JH570378 C 0 C 0 a score=758516.000000 s hg38.chr5_GL383530v1_alt 80372 65 + 101241 GTGAATTCTTTCATTT--ATTTG------CAAATAGCATTGTCAGGAAGATAGAAAAGGAATTATTTTTATTC s panTro5.chr5 20314256 65 + 181907262 GTGAATTCTTTCATTT--ATTTG------CAAATAGCGTTGTCAGGAAGATAGAAAAGGAATTATTTTTATTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326585 65 + 183735486 GTGAATTCTTTCATTT--ATTTG------CAAATAGCGTTGTCAGGAAGATAGAAAAGGAATTATTTTTATTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4813257 65 - 13748885 GTGAATTCTTTCATTT--ATTTG------CAAATAGCGTTGTCAGGAAGATAGAAAAGGAATTATTTTTATTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53845807 65 - 163208435 GTGAATTCTTTCATTT--ATTTG------CAAATAGCATTGTCAGGAAGATAGAAAAGGAATTATTTTTGTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868683 65 - 180051392 GTGAATTCTTTCATTT--ATTTG------CAAATAGCCTTGTCAGGAAGATACAAAAAGAATTATTTTTATTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87973089 65 - 181584905 GTGAATTCTTTCATTT--ATTTG------CAAATAGCCTTGTCAGGAAGATACAAAAAGAATTATTTTTATTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200490 65 - 8785636 GTGAATTCTTTCATTT--ATTTG------CAAATAGCCTTGTCAGGAAGGTACAAAAAGAATTATTTTTATTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1664168 65 + 27333823 GTGAATTCTTTCATTT--ATTTG------CAAATAGCCTTGTCAGGAAGATACAAAAAGAATTATTTTTATTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1933794 65 - 91010382 GTGAATTCTTTCATTT--ACTTG------CAAATAGCCTTGTCAGGAAGATACAAAAGGAATTATTTTTATTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2053247 65 + 5179401 GTGAATTCTTTCATTT--ATTTG------CAAATAGCCTTGTCAGGAAGATACAAAAGGAATTATTTTTATTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7756001 65 - 21726897 GTGAATTCTTTAATTT--ATTTG------CAAATAGCCTTGTCAGGAAGATACAAAAGGAATTATTTTTATTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565563 60 + 204313951 GTGATTTATTTCATTT--ATTTG------AAAATAGACTTTTCAGGAAGAT-----AGGAATCATTTTGATCC i calJac3.chr2 C 0 I 11 s saiBol1.JH378106 45019017 64 + 71252344 GTGAATTATTTCATTT--ATTTG------CAAATAGACTTTTCAGGACGATA-GAAAGGAATTATTTTGAttc i saiBol1.JH378106 C 0 I 14 s cebCap1.NW_016107830v1 378101 64 - 1393929 GTGAATTATTTCATTT--ATTTG------CAAATAGACTTTTCAGGATGATA-GAAAGGAATTATTTTGATTC i cebCap1.NW_016107830v1 C 0 I 17077 s aotNan1.NW_018506370v1 1450566 59 - 15889662 GTGAATTATTTCATTT--ATTTG------CAAATGGACTTTTCAGGAAGAT------GGAATTATTTTGATTC i aotNan1.NW_018506370v1 C 0 I 1 s proCoq1.NW_012147189v1 638262 71 - 10520994 atacattcattcattt--atttgatcttctaaacagccttatcaggaagatagggaaggaactatttttattc i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1341483 71 - 29863360 GTacattcattcattt--attcaatcttctgaatagccttatcaggaagataggcaaggaggtatttttattc i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14341374 67 + 91889043 atatgttcattcattt--gtttgat----cctccagtcttgtctgcaaaatagggaagtcattatttttagct i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1273828 65 - 11655695 gtgcactcattcatttgagcttc------caaataaccttataaagcacatagagac--aattatttttattc i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84848855 563 + 108143057 I a score=1467287.000000 s hg38.chr5_GL383530v1_alt 80437 144 + 101241 CCGTTTTTTTTTTAGTAAGGAAACTTGGAAGCAAGTAGCTAGT--------------------------------------------------------------------AA-A----------------------------------------TGACATGGAA-------------------------------------------------------------------------------TCCTGGTTTCAAAAGCTCAACTCTTTCCTGGGTTCCAGATTGGTAGTTGAC----AA----TGAATTTGCTCCCAAGTTTGCATGAGAGGAACCTC s panTro5.chr5 20314321 143 + 181907262 CCGTTTTTTTTT-AGTAAGGAAACTTGGAAGCAAGTAGCTAGT--------------------------------------------------------------------AA-A----------------------------------------TGACATGGAA-------------------------------------------------------------------------------TCCTGGTTTCAAAAGCTCAACTCTTTCCTGGGTTCCAGATTGGTAGTTGAC----AA----TGAATTTGCTCCCAAGTTTGCATGAGAGGAACCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326650 142 + 183735486 CCGTTTTTTTT--AGTAAGGAAACTTGGAAGCAAGTAGCTAGT--------------------------------------------------------------------AA-A----------------------------------------TGACATGGAA-------------------------------------------------------------------------------TCCTGGTTTCAAAAGCTCAACTCTTTCCTGGGTTCCAGATTGGTAGTTGAC----AA----TGAATTTGCTCCCAAGTTTGCATGAGAGGAACCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4813322 143 - 13748885 CTGTTTTTTTTT-AGTAAGGAAACTTGGAAGCAAGTAGCTAGT--------------------------------------------------------------------AA-A----------------------------------------TGACATGGAA-------------------------------------------------------------------------------TCCTGGTTTCAAAAGTTCAACTCTTTCCTGGGTTCCAGATTGGTAGTTGAC----AA----TGAATTTGCTCCCAAGTTTGCATGAGAGGAACCTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53845872 142 - 163208435 CTGTTTTTTTT--AGTAAGGAAACTTGGAAGCAAGTAGTTAGT--------------------------------------------------------------------AA-A----------------------------------------TGACATGGAA-------------------------------------------------------------------------------TCCTGGTTTCAAAAGCTCAACTCTTTCCTGGGTTCCAGATTGGTAGTTGAC----AA----TGAATTTGCTCCTAAGTTTGCATGGGAGGAACCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868748 142 - 180051392 CTGTTTTATTTT-ATTAAGGAAACTTGGAAGCAGGTAGCTACT--------------------------------------------------------------------AA-A----------------------------------------CGACATGGAA-------------------------------------------------------------------------------TCCTGGTTTCAAAAACTCAACTCTTTCCTGGGTT-CAGATTGGTAGTTGAC----AA----TGAATTTGCTCCCAAGTTTGCATGGGAGGAACCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87973154 142 - 181584905 CTGTTTTATTTT-ATTAAGGAAACTTGGAAGCAGGTAGCTACT--------------------------------------------------------------------AA-A----------------------------------------CGACATGGAA-------------------------------------------------------------------------------TCCTGGTTTCAAAAACTCAACTCTTTCCTGGGTT-CAGATTGGTAGTTGAC----AA----TGAATTTGCTCCCAAGTTTGCATGGGAGGAACCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200555 142 - 8785636 CTGTTTTATTTT-ATTAAGGAAACTTGGAAGCAGGTAGCTACT--------------------------------------------------------------------AA-A----------------------------------------CGACATGGAA-------------------------------------------------------------------------------TCCTGGTTTCAAAAACTCAACTCTTTCCTGGGTT-CAGATTGGTAGTTGAC----AA----TGAATTTGCTCCCAAGTTTGCATGGGAGGAACCTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1664233 142 + 27333823 CTGTTTTATTTT-ATTAAGGAAACTTGGAAGCAGGTAGCTACT--------------------------------------------------------------------AA-A----------------------------------------CAACATGGAA-------------------------------------------------------------------------------TCCTGGTTTCAAAAACTCAACTCTTTCCTGGGTT-TAGATTGGTAGTTGAC----AA----TGAATTTGCTCCCAAGTTTGCATGGGAGGAACCTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1933859 142 - 91010382 CTGTTCTATTTT-ATTAAGGAAACTTGGAAGTAGGTAGCTACT--------------------------------------------------------------------AA-A----------------------------------------CGACATGGAA-------------------------------------------------------------------------------TCCTGGTTTCAAAAACTCAACTCTTTCCTGGGTT-CAGATAGGTAGTTGAC----AA----CGAATTTGCTCCCAAGTTTGCACAGGAGGAACCTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2053312 142 + 5179401 CTGTTCTATTTT-ATTAAGGAAACTTGGAAGCAGGTAGCTACT--------------------------------------------------------------------AA-A----------------------------------------CGACATGGAA-------------------------------------------------------------------------------TCCTGGTTTCAAAAACTCAACTCTTTCCTGGGTT-CAGATTGGTAGTTGAT----AA----TGAATTTGCTCCCAAGTTTGCACGGGAGGAACCTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7756066 142 - 21726897 CTGTTTTATTTT-CTTAAGGAAACTTGGAAGCAGGTAGCTACT--------------------------------------------------------------------AA-A----------------------------------------CAACATGGAA-------------------------------------------------------------------------------TCCTGGTTTCAAAAACTCAACTCTTTCCTGGGTT-CAGACTAGTAGTTGAC----AA----TGAATTTGCTCCCAAGTTTGCACGGGAGGAACCTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565634 136 + 204313951 TTTTCTTTTTTA-AGTAAAGAAACTTGGAAGCAGGTAGCTAAT--------------------------------------------------------------------AA-A----------------------------------------TGGCATGGAA--------------------------------------------------------------------------------------TTCAGTATATCAACTCTTTCCTAGGTTCCAGACTGGTAGTTAAC----AA----TGAATTTGCTCCCAAGTTTTCATGGGAGGAGCCTC i calJac3.chr2 I 11 C 0 s saiBol1.JH378106 45019095 143 + 71252344 tttttttttttA-CGTAAAGAAACTTGGAAGCAGGTAGCTAGT--------------------------------------------------------------------AA-A----------------------------------------TGGCATGGAA-------------------------------------------------------------------------------TTCTGGTTTCAATATATCAACTCTTTCCTAGGTTCCAGACTGGTAGTTAAC----AA----TGAATTTGCTCCCAAGTGTTCATGGGAGGAGCTTC i saiBol1.JH378106 I 14 C 0 s aotNan1.NW_018506370v1 1450626 143 - 15889662 TTTTTTTTTTTA-AGTAAAGAAACTTGGAAGCAGGTAGCTAGT--------------------------------------------------------------------AA-A----------------------------------------TGGCATGGAA-------------------------------------------------------------------------------TTCTGGTTTCAATATATCAGCTCTTTCCTAGGTTCCAGACTGGTAGTTAAC----AA----TGAATTTGCTCCCAAGTTTTCATGGGAGGAGCCTC i aotNan1.NW_018506370v1 I 1 C 0 s proCoq1.NW_012147189v1 638333 145 - 10520994 --ttgttttcct-agtaaggaaacttggaagcaggcagctaat--------------------------------------------------------------------ag-g----------------------------------------taacatgTAT-------------------------------------------------------------------------------TTCTAGTTTCAATAGCTCCACTCTTTCATGGGTTCCAGATTGGAAGTTAACATTTAG----TGGATTTGCTCCCAAGTTTGCATGGGAAGAGGCTC i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1341554 146 - 29863360 --ttgttttCTC-TGTAAGTACACTCACAAGCAGGCAGGTAGG--------------------------------------------------------------------AACA----------------------------------------TGACATGTAA-------------------------------------------------------------------------------TTCTAGTTTCAATACGTCAGCTCTTTCATGGGTTCCAGATTGGAATTTAATGTTTAG----TGGATTTGCTCCTAAGTTTGCATGAGAGGAAACTC i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14341441 327 + 91889043 ---ctgtttttc-agtaagggaactaggaagcagagagCTGGTGTCATGTATTTCAGATTTCTTTTTTTtttttttttaagattttatttattcatgagagagagagaggcaa-agacacaggcagaaggagaagcaggctccatgcagggagcccgacatgggactcgatcctgggaatccaggatcatgccttgggctgaaggcaggcgttaaattgctgagccacccaggGATCCCAATATTTCAGGTTTCAATAGCTCCAGTCTTTCCTGGGTTCCATATGGAATGCCCTT----AG----TAGATTTCCTCCCAACTTTGAATGGGAAGAGATTA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1273893 144 - 11655695 ---tctttttcc-agtaaggaaactgggaagcagacagttagt--------------------------------------------------------------------aa-g----------------------------------------tgaTATATAT-------------------------------------------------------------------------------TTCTGGTTTCAACAGCTGAACTCTTTACTGAGTCCCAGACTGGAAATTAGC----AATTGGTGAATTTGTTCCAAAAGTTACAGGGGAAGAGATTA i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84848855 563 + 108143057 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=80237.000000 s hg38.chr5_GL383530v1_alt 80581 5 + 101241 AAAAA s panTro5.chr5 20314464 5 + 181907262 AAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326792 5 + 183735486 AAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4813465 5 - 13748885 AAAAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53846014 5 - 163208435 AAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868890 5 - 180051392 AAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87973296 5 - 181584905 AAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200697 5 - 8785636 AAAAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1664375 5 + 27333823 AAAAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1934001 5 - 91010382 AAAAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2053454 5 + 5179401 AAAAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7756208 5 - 21726897 AAAAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565770 5 + 204313951 AAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45019238 5 + 71252344 AAAAA i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1450769 5 - 15889662 AAAAA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84849418 5 + 108143057 AAAAA i micMur3.chr12 I 563 C 0 s proCoq1.NW_012147189v1 638478 5 - 10520994 AAAAA i proCoq1.NW_012147189v1 C 0 I 382 s otoGar3.GL873536 1341700 5 - 29863360 AAACA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14341768 5 + 91889043 GAAAA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1274037 5 - 11655695 AAAAA i dasNov3.JH570378 C 0 C 0 e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=111613.000000 s hg38.chr5_GL383530v1_alt 80586 9 + 101241 TCAATAGCT s panTro5.chr5 20314469 9 + 181907262 TCAATAGCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326797 9 + 183735486 TGAATAGCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4813470 9 - 13748885 TCAATAGCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53846019 9 - 163208435 TCAATAGCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868895 9 - 180051392 TCAATAGCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87973301 9 - 181584905 TCAATAGCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200702 9 - 8785636 TCAATAGCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1664380 9 + 27333823 TCAATAGCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1934006 9 - 91010382 TCAATAGCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2053459 9 + 5179401 TCAATAGCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7756213 9 - 21726897 TCAATAGCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565775 9 + 204313951 TCAATAGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45019243 9 + 71252344 TCAATAGTT i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1450774 9 - 15889662 TCAATAGTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84849423 9 + 108143057 TCAATAGTT i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1341705 9 - 29863360 TCAATAGCT i otoGar3.GL873536 C 0 I 1088 s canFam3.chr3 14341773 9 + 91889043 TCAGTATCT i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1274042 9 - 11655695 CCAAAGTAT i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 638483 382 - 10520994 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=314541.000000 s hg38.chr5_GL383530v1_alt 80595 26 + 101241 CTAGAATATAGATATCTAAAAGGAAG s panTro5.chr5 20314478 26 + 181907262 CTAGAATATAAATATCTAAAAAGAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326806 26 + 183735486 CTAGAATATAAATATCTAAAAAGAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4813479 26 - 13748885 CTAGAATATAAATATCTAAAAAGAAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53846028 26 - 163208435 CTAGAATATAAATATCTAAAAAGAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868904 26 - 180051392 CTAGAATATAAATATCTAAAAAGAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87973310 26 - 181584905 CTAGAATATAAATATCTAAAAAGAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200711 26 - 8785636 CTAGAATATAAATATCTAAAAAGAAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1664389 26 + 27333823 CTAGAATATAAATATCTAAAAAGAAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1934015 26 - 91010382 CTAGAATATAAATATCTAAAAAGAAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2053468 26 + 5179401 CTACATTATAAATATCTAAAAAGAAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7756222 26 - 21726897 CTAGAATATAAATATCTAAAAAGAAG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565784 26 + 204313951 CTAGAATATAAATATCTAAAAAGAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45019252 26 + 71252344 CTAGAATATAAATATCTAAAAAGAAG i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1450783 26 - 15889662 CTAGAATATAAATATCTATAAAAAAG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84849432 26 + 108143057 CTACAGTATAAAAGTCTAAAAAGAAG i micMur3.chr12 C 0 C 0 s canFam3.chr3 14341782 26 + 91889043 GTAGAATATAAATGTCTAAAAAGAAG i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1274051 24 - 11655695 CTAGAGTATAAATGTTTAAAAAGT-- i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 638483 382 - 10520994 I e otoGar3.GL873536 1341714 1088 - 29863360 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=204466.000000 s hg38.chr5_GL383530v1_alt 80621 21 + 101241 AGAGGTTTAGCAG----AAAGAAAA- s panTro5.chr5 20314504 21 + 181907262 AGAGGTTTAGCAG----AAAGAAAA- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326832 21 + 183735486 AGAGGTTTAGCAG----AAAGAAAA- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4813505 21 - 13748885 AGAGGTTTAGCAG----AAAGAAAA- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53846054 21 - 163208435 AGAGGTTAAGCAG----AAAGATAA- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868930 20 - 180051392 AGAGGTTTAGCAG----AAA-AAAA- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87973336 19 - 181584905 AGAGGTTTAGCAG-----AA-AAAA- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200737 20 - 8785636 AGAGGTTTAGCAG----AAA-AAAA- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1664415 20 + 27333823 AGAGGTTTAGCAG----AAA-AAAA- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1934041 20 - 91010382 AGAGGTTTAGCAG----AAA-AAAA- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2053494 20 + 5179401 AGAGGTTTAGCAG----AAA-AAAA- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7756248 20 - 21726897 AGAGGTTTAGCAG----AAA-AAAA- i colAng1.NW_012115488v1 C 0 I 1 s calJac3.chr2 112565810 20 + 204313951 AGGTGTTTAGCAG----AAA-AAAA- i calJac3.chr2 C 0 I 2 s saiBol1.JH378106 45019278 24 + 71252344 AGGTGTTCAGCAGAAAAAAA-AAAA- i saiBol1.JH378106 C 0 I 2 s aotNan1.NW_018506370v1 1450809 20 - 15889662 AGGTGTTTAGCTG----AAA-AAAA- i aotNan1.NW_018506370v1 C 0 I 2 s micMur3.chr12 84849458 18 + 108143057 --AGGTTTAGCAG----AAA-AAAC- i micMur3.chr12 C 0 I 1 s proCoq1.NW_012147189v1 638865 20 - 10520994 AGAGGTTTAGCAG----AAA-AAAC- i proCoq1.NW_012147189v1 I 382 I 1 s canFam3.chr3 14341808 18 + 91889043 --AGGTTTAGCAG----GAA-AAAA- i canFam3.chr3 C 0 I 3 s dasNov3.JH570378 1274075 21 - 11655695 AAAGGTTTGGCCA----AAA-AAATA i dasNov3.JH570378 C 0 C 0 e otoGar3.GL873536 1341714 1088 - 29863360 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=324359.000000 s hg38.chr5_GL383530v1_alt 80642 28 + 101241 --TTCATAAAGATAGTGGTGCATTGTTTTT s panTro5.chr5 20314525 27 + 181907262 --TTCATAAAGATAGTGGTGCATTGTTTT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326853 27 + 183735486 --TTCATAAAGATAGTGGTGCATTGTTTT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4813526 28 - 13748885 --TTCATAAAGATAGTGGTGCATTGTTTTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53846075 28 - 163208435 --TTCATAAAGATATTGGTGCATTGTTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868950 28 - 180051392 --TTCATAAAGATATTGGTGCATTGTTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87973355 28 - 181584905 --TTCATAAAGATATTGGTGCATTGTTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200757 28 - 8785636 --TTCATAAAGATATTGGTGCATTGTTTTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1664435 28 + 27333823 --TTCATAAAGATATTGGTGCATTGTTTTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1934061 28 - 91010382 --TTCATAAAGATATTGGTGCATTGTTTTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2053514 28 + 5179401 --TTCATAAAGATATTGGTGCATTGTTTTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7756269 28 - 21726897 --TTCATAAAGATATTGGTGCATTGTTTTT i colAng1.NW_012115488v1 I 1 C 0 s calJac3.chr2 112565832 28 + 204313951 --CTCATAAAGATATTGGTGCATTGTTTTT i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 45019304 28 + 71252344 --CTCATAAAGATATTGGTGCATTGTTTTT i saiBol1.JH378106 I 2 C 0 s aotNan1.NW_018506370v1 1450831 28 - 15889662 --CTCATAAAGATATTGGTGCATTGTTTTT i aotNan1.NW_018506370v1 I 2 C 0 s micMur3.chr12 84849477 28 + 108143057 --TATGTAAAGAGATAGGTGCATTGCTTTT i micMur3.chr12 I 1 C 0 s proCoq1.NW_012147189v1 638886 28 - 10520994 --TACGTAAAGAGATAGGTGCATTGCTTAT i proCoq1.NW_012147189v1 I 1 C 0 s otoGar3.GL873536 1342802 26 - 29863360 ----TTTACAATGATAGGTGCATTGCTTCT i otoGar3.GL873536 I 1088 C 0 s canFam3.chr3 14341829 28 + 91889043 --TACAAAAAGAGCTTGGTGTATTGCTTTT i canFam3.chr3 I 3 I 178 s dasNov3.JH570378 1274096 28 - 11655695 TATACATAAGAAGATGAATAGATTCTTT-- i dasNov3.JH570378 C 0 C 0 e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=6908635.000000 s hg38.chr5_GL383530v1_alt 80670 527 + 101241 GATAGTGAAGAATTTATTCTTTAAACTAGATAACTGACT-CAGAATAATTAAATGCTGTCTTTATATTTAGCATCTCAGGCA-TCTTTTCCTCATGTCTTAATTTCCTTTTATTTCAAAATTAAAATGATGGTGCACTTTCCAAGAATTGGCTTCTCTGCAGGCTAGTTGGATATTTCCAGTGTCAGGACA-TCAGAATTTCCATGGCA--GTTCCACAAGGCATAAA----TAGTAGAGAGCTGTTTGTAT--CC------TTACCAGATTTCCCTTTCAGGCTGTAATATGCTGCTGGAGTGTTTGTGTTAGAAACACATTATTTTGCTTTAAAAACACGGCA-AGCTTGAGGTAGTTGAAGGCCATTAATAAAGAAGCTGGTAGCTTCATC--TTCTAA---G----CTTTTCCCTGGAACATGCTTCAATCTCTTTGCATATATATACGTCTCTCCCACCAAGTACGGATATTAAGCCCACTAATTAATATTTTCCATATCATTTAATCTCCTGCTCTATTTGTTAATTCTCTGGAAATGTTCAGTAATC s panTro5.chr5 20314552 527 + 181907262 GATAGTGAAGAATTTATTCTTTAAACTAGATAACTGACT-CAGAATAATTAAATGCTGTCTTTATATTTAGCATCTCAGGCA-TCTTTTCCTCATGTCTTAATTTCCTTTTATTTCAAAATTAAAATGATGGTGCACTTTCCGAGAATTGGCTTCTCTGCAGGCTAGTTGGATATTCCCAGTGTCAGGACA-TCAGAATTTCCATGGCA--GTTCCACAAGGCATAAA----TAGTAGAGAGCTGTTTGTAT--CC------TTACCAGATTTCCCTTTCAGGCTGTAATATGCTGCTGGAGTGTTTGTGTTAGAAACACATTATTTTGCTTTAAAAACACGGCA-AGCTTGAGGTAGTTGAAGGCCATTAATAAAGAAGCTGGTAGCTTCATC--TTCTAA---G----CTTTTCCCTGGAACATGCTTCAATCTCTTTGCATATATATATGTCTCTCCCACCAAGTACGGATATTAAGCCCACTAATTAATATTTTCCATATCATTTAATATCCTGCTCTATTTGTTAATTCTCTGGAAATGTTCAGTAATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20326880 527 + 183735486 GATAGTGAAGAATTTATTCTTTAAACTAGATAACTGACC-CAGAATAATTAAATGCTGTCTTTATATTTAGCATCTCAGGCA-TCTTTTCCTCATGTCTTAATTTCCTTTTATTTCAAAATTAAAATGATGGTGCACTTTCCAAGAATTGGCTTCTCTGCAGGCTAGTTGGATATTCCCAGTGTCAGGACA-TCAGAATTTCCATGGCA--GTTCCACAAGGCATAAA----TAGTAGAGAGCTGTTTGTAT--CC------TTACCAGATTTCCCTTTCAGGCTGTAATATGCTGCTGGAGTGTTTGTGTTAGAAACACATTATTTTGCTTTAAAAACACGGCA-AGCTTGAGGTAGTTGAAGGCCATTAATAAAGAAGCTGGTAGCTTCATC--TTCTAA---G----CTTTTCCCTGGAACATGCTTCAATCTCTTTGCATATATATATGTCTCTCCCACCAAGTACGGATATTAAGCCCACTAATTAATATTTTCCATATCATTTAATATCCTGCTCTATTTGTTAATTCTCTGGAAATGTTCAGTAATC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4813554 527 - 13748885 GATAGTGAAGAATTTATTCTTTAAACTAGATAACTGACT-CAGAATAATTAAATGCTGTCTTTATATTCAGCATCTCAGGCA-TCTTTTCCTCATGTCTTAATTTCCTTTTATTTCAAAATTAAAATGATGGTGCACTTTCCAAGAATTGGCTTCTCTGCAGGCTAGTTGGATATTCCCAGTGTCAGGACA-TCAGAATTTCCATGGCA--GTTCCACAAGGCATAAA----TAGTAGAGAGCTGTTTGTAT--CC------TTACCAGATTTCCCTTTCAGGCTGTAATATGCTGCTGGAGTGTTTGTGTTAGAAACACATTATTTTGCTTTAAAAACACGGCA-AGCTTGAGGCAGTTGAAGGCCATTAATAAAGAAGCTGGTAGCTTCATC--TTCTAA---G----CTTTTCCCTGGAACATGCTTCAATCTCTTTGCATATATATATGTCTCTCCCACCAAGTATGGATATTAAGCCCACTAATTAATATTTTCCATGTCATTTAATCTCCTGCTCTATTTGTTAATTCTCTGGAAATGTTCAGTAATC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53846103 521 - 163208435 GATAGTGAAGAATTTATTCTTTAAACTAGATAACTGAC--CAGAATAATTAAATGCTGTCTTTATATTCAGCATCTCAGCCA-CCTTTTCCTCATGTCTTAATTTCCTTCTATTTCAAAATTAAA---ATGGTGCAATTTCCAAGAATTGGCTTCTCTGCAGGCTACTTGGATATTCCCAGTGTCAGGACA-TCAGAATTTCCATGGCA--GTTCCACAAGGCATAAA----TAGTAGAGAGCTGTTTGTAT--CC------TCACCAGATTTCCCTTTCAGGCTGTAATATGCTGCTGGAGCGTTTGTGTTAGAAACACATTATTTTGCTTTAAAAACACGGCA-AGCTTGAGGCAGTTGAAGGCCATTAATAAAGAAGCTGGTAGCTTCATC--TTCTAA---G----TTTTTCCCTGGAACATGCTTCAATCTCTTTGCATATATGTATA--TCTCCCACCAAGTATGGATATTAAGCCCACTAATTAATATTTTCTATATCATTTAATCTCCTGCTCTATTTGTTCATTCTCTGGAAATGTTCAGTAATC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87868978 521 - 180051392 GATAGTGAAGAATTTATTCTT-----TAGATAACTAACT-CAGAATAATTAAATGCTGTCTTTATATTCAGCATCTCAGGCA-TCTTTTTCTCATGTCTTAATTTCTTTTTATTTCAAAATTAAAATGATGGTGCAATTTCCAAGAATTGGCTTCTCTGCAAGCTAGTTGGATATTCCCAGTGTCAGGACA-TCAGAA-TTCAATGGCA--GTTCCACAAGGCATAAA----TAGTAGAGAGCTGTTTGTAT--CC------TTACCACATTTCCCTTTCAGGCTGTAATACGCTGCTGGAGTATTTGTGTTAGAAACACATTATTTTGCTTTAAAAACATGGCA-AGCTTGAGGCAGTTGAAGGCCATTAATAAAGAAGCTGGTAGCTTTATC--TGCTAA---A----CTTTCCCCTGGAACATGCTTCAATCTCTTTGCATATGTATGTGTCTCTCCCACCAAGTATGGATATTAAGCCCACTGATTAATGTTTTCCGTATCATTTAATCTACTGCTGTATTTGTTAATTCTCTGGAAATGTTCAGTAATC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87973383 521 - 181584905 GATAGTGAAGAATTTATTCTT-----TAGATAACTAACT-CAGAATAATTAAATGCTGTCTTTATATTCAGCATCTCAGGCA-TCTTTTTCTCATGTCTTAATTTCTTTTTATTTCAAAATTAAAATGATGGTGCAATTTCCAAGAATTGGCTTCTCTGCAAGCTAGTTGGATATTCCCAGTGTCAGGACA-TCAGAA-TTCAATGGCA--GTTCCACAAGGCATAAA----TAGTAGAGAGCTGTTTGTAT--CC------TTACCACATTTCCCTTTCAGGCTGTAATACGCTGCTGGAGTATTTGGGTTAGAAACACATTATTTTGCTTTAAAAACATGGCA-AGCTTGAGGCAGTTGAAGGCCATTAATAAAGAAGCTGGTAGCTTTATC--TGCTAA---A----CTTTCCCCTGGAACATGCTTCAATCTCTTTGCATATGTATGTGTCTCTCCCACCAAGTATGGATATTAAGCCCACTGATTAATGTTTTCCGTATCATTTAATCTACTGCTGTATTTGTTAATTCTCTGGAAATGTTCAGTAATC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1200785 521 - 8785636 GATAGTGAAGAATTTATTCTT-----TAGATAACTAACT-CAGAATAATTAAATGCTGTCTTTATATTCAGCATCTCAGGCA-TCTTTTTCTCATGTCTTAATTTCTTTTTATTTCAAAATTAAAATGATGGTGCAATTTCCAAGAATTGGCTTCTCTGCAAGCTAGTTGGATATTCCCAGTGTCAGGACA-TCAGAA-TTCAATGGCA--GTTCCACAAGGCATAAA----TAGTAGAGAGCTGTTTGTAT--CC------TTCCCACATTTCCCTTTCAGGCTGTAATACGCTGCTGGAGTATTTGTGTTAGAAACACATTATTTTGCTTTAAAAACATGGCA-AGCTTGAGGCAGTTGAAGGCCATTAATAAAGAAGCTGGTAGCTTTATC--TGCTAA---A----CTTTCCCCTGGAACATGCTTCAATCTCTTTGCATATGTATGTGTCTCTCCCACCAAGTATGGATATTAAGCCCACTGATTAATGTTTTCCCTATCATTTAATCTACTGCTGTATTTGTTAATTCTCTGGAAATGTTCAGTAATC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1664463 521 + 27333823 GATAGTGAAGAATTTATTCTT-----TAGATAACTGACT-CAGAATAATTAAATGCTGTCTTTATATTCAGCATCTCAGGCA-TCTTTTTCTCATGTCTTAATTTCTTTTTATTTCAAAATTAAAATGATGGTGCAATTTCCAAGAATTGGTTTCTCTGCAAGCTAGTTGGATATTCCCAGTGTCAGGACA-TCAGAA-TTCAATGGCA--GTTCCACAAGGCATAAA----TAGTAGAGAGCTGTTTGTAT--CC------TTACCACTTTTCCCTTTCAGGCTGTAATATGCTGCTGGAGTATTTGTGTTAGAAACACATTATTTTGCTTTAAAAACATGGCA-AGCTTGAGGCAGTTGAAGGCCATTAATAAAGAAGCTGGTAGCTTTATC--TGCTAA---A----CTTTCCCCTGGAACATGCTTCAATCTCTTTGCATATGTATGTGTCTCTCCCACCAAGTATGGATATTAAGCCCACTGATTAATGTTTTCCGTATCATTTAATCTACTGCTGTATTTGTTAATTCTCTGGAAATGTTCAGTAATC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1934089 520 - 91010382 GATAGTGAAGAATTTATTCTT-----TAGATAACTGACT-CGGAATAATTCAATGCTGTCTTTACATTCAGCATCTCAGGCA-TCTTTCCCTCATGTCTTAATTTCTTTTAATTTCAAAATTAAAATGATGGTGCAATTTCCAAGAATTGGCTTCTCTGCAAGCTAGTTGGATATTCCCAGTGTCAGGACA-TCAGAA-TTCAATGGCA--GTTCCAGAAGGTATAAA----TAGTAGAGAGCTGTTTGTAT--CC------TTACCAGATTTCCCTTTCAGGCTGTAATATGCTGCTGGAGTATTTGTGTTAGAAACACATTATTTTGCTTTAAAAACATGGCA-AGCTTGAGGCAGTTGAAGGCCATTAATAAAGAAGCTGGTAGCTTCATC--TGCTAA---G----CTTT-TCCTGGAACATGCTTCAATCTCTTTGCATATATATGTGTCTCTCCCACCAAGTATGGATATTAAGCCCACTAATTAATGTTTTCCATATCATTTAATCTCCTGCTGTATTTGTTAATTCTCTGGAAATGTTCAGTAATC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2053542 521 + 5179401 GATGGTGAAGAATTTATTCTT-----TAGATAACTGACT-CGGAATAATTCAATGCTGTCTTTATATTCAGCATCTCAAGCA-TCTTTTCCTCATGTCTTAATTTCTTTTAATTTCAAAATTAAAATGATGGTGCAATTCCCAAGAATTGGCTTCTCTGCAAGCTAGTTGGATATTCCCAGTGTCAGGACA-TCAGAA-TTCAATGGCA--GTTCCACAAGGCATAAA----TAGTAGAGAGCTGTTTGTAT--CC------TTACCACATTTCCCTTTCAGGCTGTAATATGCTGCTGGAGTATTTGTGTTAGAAACACATTATTTTGCTTTAAAAACATGGCA-AGCTTGAGGCAGTTGAAGGCCATTAATAAAGAAGCTGGTAGCTTTATC--TGCTAA---A----CTTTCCCCTGGAACATGCTTCAATCTCTTTGCATATGTATGTGTCTCTCCCACCAAGTATGGATATTAAGCCCACTGATTAATGTTTTCCGTATCATTTAATCTACTGCTGTATTTGTTAATTCTCTGGAAATGTTCAGTAATC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7756297 521 - 21726897 GATAGTGAAGAATTTATTCTT-----TAGATAACTGACT-CAGAATAATTAAATGCTGTCTTTATATTCAGCATCTCAGGCA-TCTTTTCCTCATGTTTTAATTTCTTTTTATTTCAAAATTAAAATGATGGTGCAATTTCCAAGAATTGGCTTCTCTGCAAGCTAGTTGGATATTCCCAGTGTCAGGACA-TCAGAA-TTCAATGGCA--GTTCCCCAAGGCATAGA----TAGTAGAGAGCTGTTTGTAT--CC------TTACCAGATTTCCGTTTCAGGCTGTAATATGCTGCTGGAGTATTTGTGTTAGAAACACATTATTTTGCTTTAAAAACACGGCA-AGCTTGAGGCAACTGAAGGCCATTAATAAAGAAGTTGGTAGCTTCATC--TGCTAA---G----CTTTTCCCTGGAGCATGCTTCAATCTCTTTGCATATATATGTGTCTCTTGCACCAAGTATGGATATTAAGCCCACTAATTAATATTTTCCATATTATTTAATCTCCTGCTGTATTTGTTAATTCTCTGGAAATGTTCAGTAATC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112565860 521 + 204313951 GGTAGTGAAGA----ATTCTTTAAATGAGATAACTGACT-CAGAATAATTAAATGCTGTCTTTGTATTCAGCATCTCAGATA-TCGTTTCCTCATGTCTTAATTTCTTTTTATTTCAAAATTAAAATGATGGTGAAATTTCCAGGGACTGACTTCTCTGCAAGCTAGTTGGCTGTTCCCAGTGTCAGGACA-TCAGAA-TTCAATGGTC--GTTTTGAAAGGCATAAATAAATAGTAGAGAGCTGTTTCTAT--CC-------CAGCAGATTTCCCTGTCAGGCTATAATGTGCTACTGGAACATTTGTGTTAGAAACACATTATTCTGCTTTAAAAACACAGCA-AGCTTGAGGCAATTGAAGCCCATTAATAAAGAGGCTGGTAGCTTCATC--TTCTAA---G----CATTTCCCTGGAACATGCTTCAGTCTCTTTGCATATAT----GCCTCTCCCACCAAGTATGGATATTTAGCCCACTAATTAATATTTTCCATATAATTTAATCTCCTGCTCTATTTGTTAATTCTCTGGAAATGTTCAGTAATC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45019332 521 + 71252344 GGTAGTGAAGA----ATTCTTTAAAAGAGATAACTGACT-TAGAATAATTAAATGCTCTCTTTATATTCAGCATCTCAGATA-TCATTTCCTCATGCCTTAATTTCTTTTTATTTCAAAATTTAAATGATGGTGAAATTTCCAGGAATTGACTTCTCTGTAAGCTAGTTGGCTGTTCCCAGTGTCAGGACA-TCAGAA-TTCAATGGCA--GTTTCGCAAGGCATAAATAAGTAGTAGAGAGCTGTTTCTAT--CC-------CGCCAGATTTCCCTATCAGGCTGTAATGTGCTGCTGGAGCATTTGTGTTAGAAACACATTATTTTGCTTTAAAAACACAGCA-AGCTTGAGGCAGTTGAAGCCCATTAATAAAGAGGCTGGTAGCTTCATC--TTCTAA---G----CATTTCCCTGGAACATGCTTCAGTCTCTTTGCATATAT----GCCTCTCTCACCAAGTATGGATATTTAGTCCACTAATTAATATTTTCCATATCATTTAATCTCCTGCTCTATTTGTTAATTCTCTGGAAATGTTCAGTAATC i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1450859 521 - 15889662 GGTAGTTAAGA----ATTCTTTAAATGAGATAACTGACT-CAGAATAATTAAATGCTGTGTTTATATTCAGCATCTCAGATA-TCGTTTCCTCGTGTCTTAATTTATTTTTATTTCGAAATTAAAATGATGGTGAAATTTCCAGGAATTGACTTCTCTGCAAGATAGTTGGCTGTTCCCAGTGTCAGGACA-TCAGAA-TTCAATGGCA--ATTTTGCAAGGCATAAATAAATAGTAGAGAGGTGTTTCTAT--CC-------CGTCAGATTTCCCTATCAGGCTGTAATGTGCTGCTGGAGCATTTGTGTTAGAAACACATTATTTTGCTTTAAAAACACAGCA-AGCTTGAGGTAGTTGAAGCCCATTAATAAAGAGGCTGGTAGCTTCATC--TTCTAA---G----CATTTCCCTGGAACATGCTTCAGTCTCTTTGCATATAT----GACTCTCCCACCAAGTATGGATATTTAGCCCACTAATTAATATTTTCCATATCATTTAATCTCCTGCTCTATTTGTTAATTCTCTGGAAATGTTCAGTAATC i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84849505 509 + 108143057 GATAGTGAAAAATTTATCCTTTAAATTATATAACCAATC-CAGAATAATTGCATGCTGTCATTATATTTAGCAAATTAGACA-TCTTTTTCTCATGTCTTAATTTATTTT--TTTCAAAATTAAGATGAGGATGCAATTCCCTAGAATTGGCTTCTCTGCAAGCTAGTTGGATATTCCCAGTGTC-GGGCA-TCAGAA-TTTAATGGCA--GTTCCAGAAGGCATAAA----TGATAGAGAACTATTTGTAT--CT------TTACCAGATTTCTCTTCCAGGCTGTAGTGCGCTTCTGGAGTGTTTGTGTTAGAAACACGTTATTTTGCTTTA---------------TTGAGGCAGTTGAAGGCCATTAACAAGGAGGCTGATAACTTCCTG--TTCTGA---GCTTGCTTTTCTGTGGAACATGCTTCAGTCTCTTTGCATATAT----GTCTTTCCTGCCAAGTGTAGAGATTAAGACTACCAATCAATATTTTCCATATCATTTAATCTCCCGATCTATTTGTTGATTCTCTGGAAATGCTCAGTAATC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 638914 528 - 10520994 -ATAGTGAAAAATGTATCCTTTAAATTAGATAACCAATC-CAGAATAATTGCATGCTGTCATTATATTCAGCAAATTAGACA-TCTTTTTCTGATGTGTTAATTTATTTT--TTCCAAAATTAAGATGAGGATGCAATTTCCTAGAATTGGCTTCTCTGCAAGCCAGTTGAATATTCCCAGTGTC-GAGCA-TCAGAA-TTCAATGGCA--GTTCCAGAAGGCCTAAA----AGATAAAGAGCTATTTGTAT--CTGTATCCTTACCAGATTTCCCTTCCAGGCTGTAGTGTGCGTCTGGAGTGTTTGTGTTAGAAACGAATTATTTTGCTTTAAAAACACAGCA-AGGTTGAGTCAGTTGAAGGCCATTAATAAAGAGGCTGACAGCTTCCTC--TTCTAA---GCTCATTTTTCTGTGGAACATGCTTCAGTCTCTTTGCATATAT----GTCTTTCCTACCAAGTGTGGAGATTAAGAATACCAATCAATATTTTCCATATCATTTAATCTCCTGATCTATTTGTTGATTCTCTGGAAATGCTCAGTAATC i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1342828 520 - 29863360 GATTGTGAAAATTTTATCCTTTGACTTAGATAACCAATT-CAGAGAAATTACATGCTGTCTTTATATTCAGCAAATTAGACA---TTTTACTCACATCTTAATTCATTCT--TTTCAAGCTTAAGATGAGGATGCAGTTTCCTAGAATTGGCTTCTCTGCAAACTAGCTGGATATTCTCAGTGTCTGAGCA-TCAGAA-TTCAATGGCA--ATTCCTGAAGGCAAAAA----TGACAGAAAGCTATTTGTAT--CC------TTAGTGGATTTCCCTTACAGGCTGTAGTGTCCTCCTGGAGTGTTTGTATTGGAAACACGTTATTCTGCTTTAAAAACACAGTG-AGGCTGAGGCAGTTGAAAGCCATTAGTAAGGAGGCAGATAGCTTCATC--TTCTAA---GTTCACTTTTCTGTGGAACATATTTCAGTCTCTTTGAACACA------TCTCTCCTGCCTATTGTGGATCTTAAGACCACCAATCAATATTTTCTATATCACTTAATCTCCTGATCTATTTGTTGATTTTCTGGAAATGCTTAGTAATC i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14342035 518 + 91889043 TATGGTGAATAACTGATCATC-----TAAATAACCAACTCCAGAATAGCTGAATGCTGCCTTTATACTCAGCATCTCAGACA-TCTTTTTCCCATGTCtaaattttttttaa---aaaaattaaCATGATGTTGCTATTTCGTAGAATTGACTTCCTTGCAGGCTCATTGGAGATGCCAAATATCTGGAAATTCAGAA-TTCAGTGCCA--GTTCCAGAAGACGTAAA----TAGTAGAGAGCTGTTTGTAT--CC------TTACCAGGTCTCTCTTCCAGACTGTGGTGTGCTGCTGGAGTATGTGTATTGGAAACACATTCTATTGCTTTAAAAACACAGCAGAAATTGAGGCAGTTGAAGGCCACTAATAAA-AGACTGATAGCATCATC--TTTAAACTTA----CTTTTCTCTAGTGTCTACTTCAGTCTCTTTGCATATGT----GCCACTCCTGCCAAGTGTGG-TATCAGAGCCACCAATCATTATTTTCCATGCCGTTTAATCTCCCAGTCTATTTGCTGATTCTCTGAAAGTCCTTGGTAATC i canFam3.chr3 I 178 C 0 s dasNov3.JH570378 1274124 514 - 11655695 GATAGTGAAGAATTGATCATTTAAATTAGATAACCAACTCCAGAATAACTGAGTACTGTCTTTATACTCAGCATCTCATACACTTTTTTCCTAAAATCTTTTTTTTTTTTAATTGAGAAGATAAAA------------TTTCAGGAATTGACTTCTCTG--GGCTAGTTTGAGATTCCCAATATCTGGACA-TCATAA-TTCAGTGGCAATATTCCAGAAGGCAAAAA----TGGTAGTGATCTGTTTGTATAAAT------TTACCAGATTTCCCTTTCCAGCTCAAGTGTACTGTTGGAGTAATTGTATTAGAAACATATTCTGTTGCTCTGAAATCTCAGCA-AGTTTGAGGCAGTTAAAGTCCATTAATAAGAATGCTGAGAACTTCATCCATGCTCA--------CTTTTCTCTGGAATATACTGCACTCTCTTTGCATATAA----TTCTCTCGTGCAAGATATGACTATTAAAGCCACTGGTCAACATTTTCTGTGT-ATTTAATCTCCTGGTCTAATTGCTGATTTTCTGGAAATGCTCAGTAATG i dasNov3.JH570378 C 0 I 5863 e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=2758062.000000 s hg38.chr5_GL383530v1_alt 81197 218 + 101241 AAAAGTGCATAGTCAAGGGAG-GATATGATAAGTCAGGTATGTCCTTGAACCAACAGACCCCTTTTGTTTACCCAGTAAGTCTTGAAGATAACACTAATTAGGCACATGG--AAAAATATGCAAATTATAGCCTGTACAAATTAAAAGTCATCATTAACAGTATCTCACGGAAATATAGACCTTAGGTTTCTCA-TTCCTCACAC-CCT-----CTGTGGTGTATAGA s panTro5.chr5 20315079 218 + 181907262 AAAAGTGCATAGTCAAGGGAG-GATATGATAAGTCAGGTATGTCCTTGAACCAACAGACCCCTTTTGTTTACCCAGTAAGTCTTGAAGATAACACTAATTAGGCACATGG--AAAAATATGCAAATTATAGCCTGTACAAATTAAAAGTCATCATTAACAGTATCTCACGGAAATATAGACCTTAGGTTTCTCA-TTCCTCACAC-CCT-----CTGTGGTGTATAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20327407 218 + 183735486 AAAAGTGCATAGTCAAGGGAG-GATATGATAAGTCAGGTATGTCCTTGAACCAACAGACCCCTTTTGTTTACCCAGTAAGTCTTGAAGATAACACTAATTAGGCACATGG--AAAAATATGCAAATTATAGCCTGTACAAATTAAAAGTCATCATTAACAGTATCTCACGGAAATATAGACCTTAGGTTTCTCA-TTCCTCACAC-CCT-----CTGTGGTGTATAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4814081 204 - 13748885 AAAAGTGCATAGTCAAGGGAG-GATATGATAAGTCAGGTATGTCCTTGAACCAACAGACCCCTT--------------AGTCTTGAAGATAACACTAATTAGGCACATGC--AAAAATACACAAATTATAGCCTGTACAAATTGTAAGTCATCATTAACAGTATCTCACGGAAATATAGACCTTAGGTTTCTCA-TTCGTCACAC-CCT-----CTGTGGTGTATACA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53846624 218 - 163208435 AAAAGTGCATAGTCAAGGGAG-GATATGATCAGTCAGGTATGTCCTTGAACCAACAGACCCCTTTTGTTTACCCAGTAAGTCTTGAAGATAACACTAATTAGCCACATGC--AAAAATATGCAAATTATGGCCTATGCAAATTATAAGTCATCATTAACAGTATCTCACGGAAATATAGACCTTAGGATTCTAA-TTCCTCACAC-CCT-----CTGAGATGTATAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87869499 217 - 180051392 AAAAGTGCGTAGTCAAGGGAG-GATATGATAAGTCAGGTGTGTTCTTGAACCAACAGACCCCTTTTGTTTACCCAGTAAATCTTGATGATAACACTAATTAAGCACAT-C--AAAAATATTCAAATTATAGCCTGTACAAATTATAAGTCATCATTAACAGTATCTCACTGAAATATAGACCTCAGGATTCTCA-TTCCCCACAC-CCT-----CTGTGGTGTAAAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87973904 217 - 181584905 AAAAGTGCGTAGTCAAGGGAG-GATATGATAAGTCAGGTGTGTTCTTGAACCAACAGACCCCTTTTGTTTACCTAGTAAATCTTTATGATAACACTAATTAAGCACAT-C--AAAAATATTCAAATTATAGCCTGTACAAATTATAAGTCATCATTAACAGTATCTCACTGAAATATAGACCTCAGGATTCTCA-TTCCCCACAC-CCT-----CTGTGGTGTAAAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1201306 217 - 8785636 AAAAGTGCGTAGTCAAGGGAG-GATATGATAAGTCAGGTGTGTTCTTGAACCAACAGACCCCTTTTGTTTACCTAGTAAATCTTGACGATAACACTAATTAAGCACAT-C--AAAAATATTCAAATTATAGCCTGTACAAATTATAAGTCATCATTAACAGTATCTCACTGAAATATAGACCTCAGGATTCTCA-TTCCCCACAC-CCT-----CTGTGGTGTAAAGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1664984 217 + 27333823 GAAAGTGCGTAGTCAAGGGAG-GATATGATAAGTCAGGTGTGTTCTTGAACCAACAGACCCCTTTTGTTTACCTAGTAAATATTGATGATAACACTAATTAAGCACAT-C--AAAAATATTCAAATTATAGCCTGTACAAATTATAAGTCATCATTAACAGTATCTCACTGAAATATAGACCTCAGGATTCTCA-TTCCCCACAC-CCT-----CTGTGGTGTAAAGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1934609 217 - 91010382 AAAAGTGCGTAGTCAAGGGAG-GATATGATAAGTCAGGTGTGTTCCTGAACCAACAGACCCCTTTTGTTTACCTAGTAAATCTTGATGATAACACTAATTAAGCACCT-C--AAAAATATTCAAATTCTAGCCTGTACAAATTATAAGTCATCATTAACAGTATCTCACTGAAATATAGACCTCAGGATTCTCA-TTCCCCACAC-CCT-----CTGTGGTGTAAAGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2054063 217 + 5179401 AAAAGTGCGTAGTCAAGGGAG-GATATGATAAGTCAGGTGTGTTCTTGAACCAACAGACCCCTTTTGTTTACCTAGTAAATCTTGATGATAACACTAATTAAGCACAT-C--AAAAATATTCAAATTATAGCCTGTACAAATTATAAGTCATCATTAACAGTATCTCACTGAAATATAGACCTCAGGATTCTCA-TTCCCCACAC-CCT-----CTGTGGTGTAAAGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7756818 216 - 21726897 AAAAGTGCATAGTCAAGGGAG-GATATGATAAGTCAAGTGTGTTCTTGAACCAACAGACCCCTTTTGTTTACCTAGAAAATCTTGAAGATAACACTAATTAAGCACAT-C--AAAAATATGCAAATTATA-CCTGTACAAATTATAAGTCATCATTAACAGTATCTCACTGAAATATAGACCTAAGGATTCTCA-TTCCCCACAC-CCT-----CTGTGGTGTAAAGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112566381 220 + 204313951 AAAAGTACATAGTCAAGAGAG-GATATGATAAGTCAGGTATGTTCTTGAACCAACAAACTCCTTTTGTTTACCTAATAAATCTTGAAGATAACACTAATTAAGCACATGCAAAAAAATATGCAAATTATAGCCTGTACAAATTATAAGTTATCATTAGCAGTATCTCACTGAAATATAGACCTTAGGATTCTTA-TTCCCCGCAC-ACT-----CTGTGGTGTAAAGA i calJac3.chr2 C 0 I 359 s saiBol1.JH378106 45019853 218 + 71252344 AAAAGTGCATAGTCAAGAGAG-GATATGATAAGTCAGGTATGTTCTTGAACCAACAAACTCCTTTTGTTTACCTAATACATCTTGAAGATAACACTAATTAAGCACATGC--AAAAGTATGCAAATTACAGCCTGTACAAATTATAAGTCATCATTAGCAGTATCTCACTGAAATATAGACCTTAGGATTCTTA-TTCCCCACAC-ACT-----CTGTGGTGTAAAGA i saiBol1.JH378106 C 0 I 318 s aotNan1.NW_018506370v1 1451380 218 - 15889662 AAAAGTGCATAGTCAAGGGAA-GATATGATAAGTCAGGTATGTTCTTGAACCAACAAACTCCTTTTGTTTACCTAATAAATCTTGAAGATAACACTAATTAAGCACATGC--AAAAATATGCAAATTATAGCCTGTACAAATTATAAGTCATCATTAGCAGTATCTCACTGAAATATAGACCTTAGGATTCTTA-TTCCCCACAC-ACT-----CTGTGGTGTAAAGA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84850014 206 + 108143057 AAAAGTGCACAGTCAAAGGAG-GGTGTGATAA---------GTTCCTCAACCCAAAAGCTTCTTTTGTTTACTTA---AACCTTGAAGATAACACTAATTAATCATGTGC--ATAAAAATTCAAATTATATCCTGTGCAAATTATAAATCATCATTAACAGTGTCTGACTGAAGTACAGGCCTTAGGATTCTCA-TTCCCCACAC-ACC-----GTGCAGTGTAAAGA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 639442 215 - 10520994 ACAAATGCACAGTCAAGGGAG-GGTGTGATAAGTTAGGTGTGTTCCTCAACCAAAAAGCTTCTTTCGTTTACTTA---AACCTTGAAGATAACACTAATTAATCATGTGC--ATAAAAATGCAAATTATATCTTGTGCAAATTATAAGTCATCATTGACAGTGTCTGACTGAAGTGTAGGCCTTAGGATTCTCA-TTCCTCACAC-ACC-----GTGCAGTGTAAAGA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1343348 198 - 29863360 ACAGGTACGCAGTCAA-GGAG-GGTGTGATAAGTTAGGTG----------------AGCTTCTTTTGTTTACTTA---GACATCAAAGATAACACTAATTAAGCTTGTGC--ATAAAAATGCAAAT--TATCCTGTGCAAATTATAAG---TCATTAACAGCGTCTCACTGATGTGTAGACCTGAGGATTCTCA-TTCCCCACAC-ACTGTGCAGTGCAGTGTAAAGA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14342553 212 + 91889043 AAAAGTGCATAGTCAAGGGAG-GGTGT-ATTAGTTCGATGAGTTCCTGAACTGACAAA-TTCATTTGTTTATTTA---AACCTTAAACATAACACTGATTAAGCGAATGT--GGAAAAATGCAAATTATAGCCTGTGCAAATTAT--GTCATCATCCGCAGTATCTCACTGAAGTGTAGGCTTTAGGATTTCCATTTCCCCACAC-ACT-----CTATGTTGTAGAAA i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1280501 216 - 11655695 AAAAGTGCACAACCAATGCAGAGGGATGATAAGTTAGGTGTGTTTCTGAATCTATAACCTTGTTTTGTTTACTTA---AGCTTTAAACATAATACTAATTAATCATCTGT--TGAAA-ATTCAAATTATAATTTGTGCAAATTGTAGGTCATCATTAGCAGTATCTTGCTGAAGGTTGGACCTTAGGGCTTTCT-TTCTCCACATGCCC-----TTATGGTGTAAAGA i dasNov3.JH570378 I 5863 C 0 e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=84854.000000 s hg38.chr5_GL383530v1_alt 81415 6 + 101241 GGTGTT s panTro5.chr5 20315297 6 + 181907262 GGTGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20327625 6 + 183735486 GGTGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4814285 6 - 13748885 GGTGTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53846842 5 - 163208435 GGTGT- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87869716 6 - 180051392 GGTGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87974121 6 - 181584905 GGTGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1201523 6 - 8785636 GGTGTT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1665201 6 + 27333823 GGTGTT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1934826 6 - 91010382 GGTGTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2054280 6 + 5179401 GGTGTT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7757034 6 - 21726897 GGTGTT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112566960 6 + 204313951 GGTGTT i calJac3.chr2 I 359 C 0 s saiBol1.JH378106 45020389 6 + 71252344 GGTGTT i saiBol1.JH378106 I 318 C 0 s aotNan1.NW_018506370v1 1451598 6 - 15889662 GGTGTT i aotNan1.NW_018506370v1 C 0 I 315 s micMur3.chr12 84850220 6 + 108143057 GGTGTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 639657 6 - 10520994 GGTGTT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1343546 6 - 29863360 GGTGTT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14342765 3 + 91889043 GGT--- i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1280717 6 - 11655695 GGTGTT i dasNov3.JH570378 C 0 C 0 e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=497487.000000 s hg38.chr5_GL383530v1_alt 81421 44 + 101241 GTAAT----------------------------------AGAGAAAAGAGG-CTTTACTACTCCCAGATTTCCTGGATT s panTro5.chr5 20315303 44 + 181907262 GTAAT----------------------------------AGAGAAAAGAGG-CTTTACTACTCCCAGATTTCCTGGATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20327631 44 + 183735486 GTAAT----------------------------------AGAGAAAAGAGG-CTTTACTACTCCCAGATTTCCTGGATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4814291 44 - 13748885 GTAAT----------------------------------AGAGAAAAGAGG-CTTTACTACTCCCAGATTTCCTGGATT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53846847 40 - 163208435 ----T----------------------------------AGAGAAAAGAGG-CTTTGCTGCTCCCGGATTTCCTGGATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87869722 44 - 180051392 GTAAT----------------------------------AGAAAAAAGAGG-CTTTACTGCTCCCGGATTTCCTGGATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87974127 44 - 181584905 GTAAT----------------------------------AGAAAAAAGAGG-CTTTACTGCTCCCGGATTTCCTGGATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1201529 44 - 8785636 GTAAT----------------------------------AGAAAAAAGAGG-CTTTACTGCTCCCGGATTTCCTGGATT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1665207 44 + 27333823 GTAAT----------------------------------AGAGAAAAGAGG-CTTTACTGCTCCCGGATTTCCTGGATT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1934832 44 - 91010382 GTAAT----------------------------------AGAGAAAAGAGG-CTTTACTGCTCCCGGATTACCTGGATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2054286 44 + 5179401 GTAAT----------------------------------AGAGAAAAGAGG-CTTTACTGCTCCCGGATTTCCTGGATT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7757040 44 - 21726897 GTAAT----------------------------------AGAGAAAAGAGG-CTTTACTGCTCCCAGATTTCCTGGATT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112566966 44 + 204313951 GTAAT----------------------------------AGAGAAAAGAGG-TTTTACTACTCCCAGATTTCTTGGCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45020395 44 + 71252344 GTAAT----------------------------------AGAGAAAAGAGG-TTTTACTACTCCCAGATTTCTTGGCTT i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1451919 44 - 15889662 GTAAT----------------------------------AGAGAAAAGAGG-TTTTACTACTCCCAGATTTCTTGGCTT i aotNan1.NW_018506370v1 I 315 C 0 s micMur3.chr12 84850226 43 + 108143057 GTAAC----------------------------------AGAGAAAAGAGG-CTTTACCTCTCCCTGATTT-TTGGCTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 639663 43 - 10520994 ATAAC----------------------------------AGTGAAAAGAGG-CTTTACCTCTCCCTGAGTT-TTGGCTT i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1343552 77 - 29863360 GTaaccttgtattaggctggaggagaaggcagccTAAAGAGAGAAAAGAGG-CCTTACGTCTCCCTGATTG-TTGGCAT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14342768 31 + 91889043 -------------------------------------------AACAGAGA-TTTTCTCACTCC----TTTTTTGGCTT i canFam3.chr3 C 0 I 599 s dasNov3.JH570378 1280723 45 - 11655695 GTAAC----------------------------------AGAAAAAAGGGGACTTTACCTATCATTTATCTATTGGTTT i dasNov3.JH570378 C 0 C 0 e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=97746.000000 s hg38.chr5_GL383530v1_alt 81465 8 + 101241 CCTATTCA s panTro5.chr5 20315347 8 + 181907262 CCTATTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20327675 8 + 183735486 CCTATTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4814335 8 - 13748885 CCTATTCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53846887 8 - 163208435 CCTATTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87869766 8 - 180051392 CCTATTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87974171 8 - 181584905 CCTATTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1201573 8 - 8785636 CCTATTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1665251 8 + 27333823 CCTATTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1934876 8 - 91010382 CCTATTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2054330 8 + 5179401 CCTATTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7757084 8 - 21726897 CCTATTTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112567010 8 + 204313951 CCTATTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45020439 8 + 71252344 CCTATTCA i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1451963 8 - 15889662 CCTATTCA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84850269 8 + 108143057 TCTGCTCA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012147189v1 639706 8 - 10520994 TCTGTTCA i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1343629 8 - 29863360 TCCATTCA i otoGar3.GL873536 C 0 C 0 s dasNov3.JH570378 1280768 8 - 11655695 TCTAATCA i dasNov3.JH570378 C 0 C 0 e canFam3.chr3 14342799 599 + 91889043 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=954802.000000 s hg38.chr5_GL383530v1_alt 81473 71 + 101241 ATGTGCCCTATTTCC-TTGACT--GG-TATACCCTTCCCTTTAAGGCCATCTGACCAGGATCAA---AGATGCCTGCA s panTro5.chr5 20315355 71 + 181907262 ATGTGCCCTATTTCC-TTGACT--GG-TATACCCTTCCCTTTAAGGCCATCTGACCAGGATCAA---AGATGCCTGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20327683 71 + 183735486 ATGTGCCCTATTTCC-TTGACT--GG-TATACCCTTCCCTTTAAGGCCATCTGACCAGGATCAA---AGATGCCTGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4814343 71 - 13748885 ATGTGCCCTATTTCC-TTGACT--GG-TATACCCTTCCCTTTAAGGCCATCTGACCAGGATCAA---AGATGCCTGCA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53846895 71 - 163208435 ACGTGCCCTATTTCC-TTGACT--GG-TATACCCTTCCCTTTAAGGCCATCTGACCAGGATCAA---AGCTGCCTGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87869774 71 - 180051392 ATGTGCCCTATTTCC-TTGACT--GG-TATACCCTTCCCTTTAAGGCCATCTGACCAGGATCAA---AGATGCCTGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87974179 71 - 181584905 ATGTGCCCTATTTCC-TTGACT--GG-TATACCCTTCCCTTTAAGGCCATCTGACCAGGATCAA---AGATGCCTGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1201581 71 - 8785636 ATGTGCCCTATTTCC-TTGACT--GG-TATACCCTTCCCTTTAAGGCCATCTGACCAGGATCAA---AGATGCCTGCA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1665259 71 + 27333823 ATGTGCCCTATTTCC-TTGACT--GG-TATACCCTTCCCTTTAAGGCCATCTGACCAGGATCAA---AGATGCCTGCA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1934884 71 - 91010382 ATATGCCCTATTTCC-TTGACT--GG-TATACCCTTCCCTTTAAGGCCGTCTGACCAGGATCAA---AGATGCCTGCA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2054338 71 + 5179401 ATGTGCCCTATTTCC-TTGACT--GG-TATACCCTTCCCTTTAAGGCCATCTGACCAGGATCAA---AGATGCCTGCA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7757092 71 - 21726897 ACGTGCCCTATTTCC-TTGACT--GG-TATACCCTTCCCTTGAAGACCATCTGACCGGGATCAA---AGATGCCTGCA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112567018 74 + 204313951 ATGTGCCCTGTTTCC-TTGACT--GA-TATGCCCTTCCCTTTAAGGCCATCTGTCCAGGATCTGGACAGATGCCTGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45020447 71 + 71252344 ATGTGCCCTGTTTTC-TTGACT--GA-TATGACCTTCCCTTTAAGGCCATCTGACCAGGATCAG---AGATACCTGCA i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1451971 71 - 15889662 ATGTGCCCTGTTTCC-TTGACT--GA-TATGCCCTTCCCTTTAAGACCATCTGACCAGGATCAG---AGATGCCTGCA i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84850277 71 + 108143057 ATGTTCCCTATTTCC-TTGACC--AG-TGTATCCTTCTCTTTAAGGCCATCTGACCAGGACCCA---AGATGTCTACA i micMur3.chr12 C 0 I 1 s proCoq1.NW_012147189v1 639714 71 - 10520994 ATGTTCCCTGTTTTC-TTGACT--GG-TGTGTCCCTCTCTTTAAGACCATCTGACCACGATTAA---AGATGTCTATA i proCoq1.NW_012147189v1 C 0 I 22 s otoGar3.GL873536 1343637 73 - 29863360 ACATTCCCTATTCTC-ATGACTAGAG-AGTATCATTCTCTTTAAGACCATCTGACTAGGATCAA---AGATGTCTGCA i otoGar3.GL873536 C 0 I 1 s canFam3.chr3 14343398 70 + 91889043 ATGTTCTCTCTTTTG-CTGACT--GG-TGTAGC-TTCCCTTTAAGGCCATCTAACCAGCATATA---AGATGCCTATA i canFam3.chr3 I 599 C 0 s dasNov3.JH570378 1280776 68 - 11655695 ACCTTCTCTATTTCCTTTTACT--GGATGAACTTTGCCCTTTAAGACCCTTTGACTGGGGT------ATATCTATG-- i dasNov3.JH570378 C 0 C 0 e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=198186.000000 s hg38.chr5_GL383530v1_alt 81544 22 + 101241 TTAGAAACTCCC-------------------------------------------------------------------------------CAGACATTT-C s panTro5.chr5 20315426 101 + 181907262 TTAGAAACTCCCAAGACATTTCCTTGACTGGTATACCCTTCCCTTTAAGGCCATCTGACCAGGATCAAAGATGCCTGCATTAGAAACTCCCCAGACATTT-C i panTro5.chr5 C 0 C 0 s panPan2.chr5 20327754 22 + 183735486 TTAGAAACTCCC-------------------------------------------------------------------------------CAGACATTT-C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4814414 22 - 13748885 TTAGAAACTCCC-------------------------------------------------------------------------------CAGACACTT-C i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53846966 22 - 163208435 TTAGAAACTCCC-------------------------------------------------------------------------------CAGACACTT-C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87869845 22 - 180051392 CTAGAAACTCCC-------------------------------------------------------------------------------CAGACACTT-C i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87974250 22 - 181584905 CTAGAAACTCCC-------------------------------------------------------------------------------CAGACACTT-C i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1201652 22 - 8785636 CTAGAAACTCCC-------------------------------------------------------------------------------CAGACACTT-C i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1665330 22 + 27333823 CTAGAAACTCCC-------------------------------------------------------------------------------CAGACACTT-C i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1934955 22 - 91010382 CTAGAAACTCCC-------------------------------------------------------------------------------CAGACACTT-C i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2054409 22 + 5179401 CTAGAAACTCCC-------------------------------------------------------------------------------CAGACACTT-C i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7757163 22 - 21726897 CTAGAAACTCCC-------------------------------------------------------------------------------CAGACACTT-C i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112567092 22 + 204313951 CTGGAAACTCCC-------------------------------------------------------------------------------CAGACACTT-T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45020518 22 + 71252344 CTGGAAACTCCC-------------------------------------------------------------------------------CAGACACTT-C i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1452042 22 - 15889662 CTGGAAACTCCC-------------------------------------------------------------------------------CAGACACTT-C i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84850349 21 + 108143057 TCACAACCCCCC-------------------------------------------------------------------------------CAAACACTT-- i micMur3.chr12 I 1 C 0 s otoGar3.GL873536 1343711 22 - 29863360 CCAGAACCTCCC-------------------------------------------------------------------------------CAAGCACTTA- i otoGar3.GL873536 I 1 C 0 s canFam3.chr3 14343468 22 + 91889043 CCACAACCTCCC-------------------------------------------------------------------------------CAAATACTT-G i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1280844 22 - 11655695 CTAGGATTTCCC-------------------------------------------------------------------------------AATAGGCTT-C i dasNov3.JH570378 C 0 C 0 e proCoq1.NW_012147189v1 639785 22 - 10520994 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=449865.000000 s hg38.chr5_GL383530v1_alt 81566 33 + 101241 CTTGCCTCCATCTTCAATATCCTAGACTCCTCT------ s panTro5.chr5 20315527 33 + 181907262 CTTGCCTCCATCTTCAATATCCTAGACTCCTCT------ i panTro5.chr5 C 0 C 0 s panPan2.chr5 20327776 33 + 183735486 CTTGCCTCCATCTTCAATATCCTAGACTCCTCT------ i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4814436 33 - 13748885 CTTGCCTCCATCTTCAATATCCTAGACTCCTCT------ i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53846988 33 - 163208435 CTCGCCTCCATCCTCAATATCCTAGACTCCTCT------ i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87869867 33 - 180051392 CTTGCCTCCATCCTCAATATCCTAGACTCCTCT------ i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87974272 33 - 181584905 CTTGCCTCCATCCTCAATATCCTAGACTCCTCT------ i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1201674 33 - 8785636 CTTGCCTCCATCCTCAATATCCTAGACTCCTCT------ i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1665352 33 + 27333823 CTTGCCTCCATCCTCAATATCCTAGACTCCTCT------ i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1934977 33 - 91010382 CTTGCCTCCATCGTCAATATCCTAGACTCCTCT------ i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2054431 33 + 5179401 CTTGCCTCCATCCTCAATATCCTAGACTCCTCT------ i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7757185 33 - 21726897 CTTGCCTCCGTCCTCAATATCCTAGACTCCTGT------ i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112567114 33 + 204313951 CTTGCCTCCATCCTCAATATCCTAGACTCCTCT------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45020540 33 + 71252344 CTTGCCTCCATCCTCAATATCCTAGACTCCTCT------ i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1452064 33 - 15889662 CTTGCCTCCATCCTCAATATCCTAGACTCCTGT------ i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84850370 33 + 108143057 CTTGCCTCCATCCTTAATATCCTAGACACCTCT------ i micMur3.chr12 C 0 I 9272 s proCoq1.NW_012147189v1 639807 33 - 10520994 CTTACCTCCATCCTTGATATCCTAGACTCCTCT------ i proCoq1.NW_012147189v1 I 22 I 5 s otoGar3.GL873536 1343733 22 - 29863360 CCTGCTTCCATCCTTGGTATCC----------------- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14343490 33 + 91889043 GTTGCTTCTATTCTCAAGTTCCTAACCTTTTTT------ i canFam3.chr3 C 0 I 5 s dasNov3.JH570378 1280866 39 - 11655695 CTTGCTTTCATTCTTAATATCTTAGCCTTTCTTTTACCT i dasNov3.JH570378 C 0 C 0 e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=235151.000000 s hg38.chr5_GL383530v1_alt 81599 23 + 101241 CTGTCTTACAACCATACCGA-----CAC-- s panTro5.chr5 20315560 23 + 181907262 CTGTCTTACAACCATACCGA-----CAC-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20327809 23 + 183735486 CTGTCTTACAACCATACCGA-----CAC-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4814469 23 - 13748885 CTGTCTTAAAACCACACTGA-----CAC-- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53847021 23 - 163208435 CTGTCTTACAACCACACCGA-----CAC-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87869900 23 - 180051392 CTGTCTTACAACCACGCCGA-----CAC-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87974305 23 - 181584905 CTGTCTTACAACCACGCCGA-----CAC-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1201707 23 - 8785636 CTGTCTTACAACCACGCCGA-----CAC-- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1665385 23 + 27333823 CTGTCTTACAACCACGCCGA-----CAC-- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1935010 23 - 91010382 CTGTCTTACAACCACGCCGA-----CAC-- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2054464 23 + 5179401 CTGTCTTACAACCACGCCGA-----CAC-- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7757218 23 - 21726897 CTGTCTTACAACCACGCCGA-----CAC-- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112567147 23 + 204313951 CTGTCTTACAGTTACACTGA-----CAC-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45020573 23 + 71252344 CTGTCTTACAGCCACACTGA-----CAC-- i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1452097 23 - 15889662 CTGTCTTACAGCCACACTGA-----CAC-- i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 639845 23 - 10520994 CTGTCCTACAACCATGCCAA-----TAC-- i proCoq1.NW_012147189v1 I 5 I 16 s otoGar3.GL873536 1343755 17 - 29863360 ------TATCACCATGGAGA-----TAT-- i otoGar3.GL873536 C 0 I 3 s canFam3.chr3 14343528 23 + 91889043 CTGTCCTACAAAAATGTGGA-----TAG-- i canFam3.chr3 I 5 I 2 s dasNov3.JH570378 1280905 30 - 11655695 TTGTTGTACATCTATCCTGAATGCCTATTT i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84850403 9272 + 108143057 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=104307.000000 s hg38.chr5_GL383530v1_alt 81622 16 + 101241 TTAAAAATAAC-----TTGTT s panTro5.chr5 20315583 16 + 181907262 TTAAAAATAAC-----TTGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20327832 16 + 183735486 TTAAAAATAAC-----TTGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4814492 16 - 13748885 TTAAAAATAAC-----TTGTT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53847044 11 - 163208435 ttaaaaataac---------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87869923 11 - 180051392 TTAAAAATAAC---------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87974328 11 - 181584905 TTAAAAATAAC---------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1201730 11 - 8785636 TTAAAAATAAC---------- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1665408 11 + 27333823 TTAAAAATAAC---------- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1935033 11 - 91010382 TTAAAAATAAC---------- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2054487 11 + 5179401 TTAAAAATAAC---------- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7757241 16 - 21726897 TCAAAAATAACTTgtt----- i colAng1.NW_012115488v1 C 0 I 2264 s calJac3.chr2 112567170 11 + 204313951 TTAAAAATAAC---------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45020596 11 + 71252344 TTAAAAATAAC---------- i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1452120 11 - 15889662 ttaaaaataac---------- i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1343775 11 - 29863360 TAAAAAATAAA---------- i otoGar3.GL873536 I 3 I 2 s canFam3.chr3 14343553 11 + 91889043 TTTAAAATAAC---------- i canFam3.chr3 I 2 C 0 s dasNov3.JH570378 1280935 11 - 11655695 TTAAAAATAAC---------- i dasNov3.JH570378 C 0 C 0 e micMur3.chr12 84850403 9272 + 108143057 I e proCoq1.NW_012147189v1 639868 16 - 10520994 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I a score=1866.000000 s hg38.chr5_GL383530v1_alt 81638 3 + 101241 GAG s panTro5.chr5 20315599 3 + 181907262 GAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20327848 3 + 183735486 GAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4814508 3 - 13748885 GAG i gorGor5.CYUI01014999v1 C 0 C 0 s otoGar3.GL873536 1343788 2 - 29863360 -AA i otoGar3.GL873536 I 2 I 1 e canFam3.chr3 14343564 0 + 91889043 C e micMur3.chr12 84850403 9272 + 108143057 I e proCoq1.NW_012147189v1 639868 16 - 10520994 I e dasNov3.JH570378 1280946 0 - 11655695 C e aotNan1.NW_018506370v1 1452131 0 - 15889662 C e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45020607 0 + 71252344 C e calJac3.chr2 112567181 0 + 204313951 C e colAng1.NW_012115488v1 7757257 2264 - 21726897 I e manLeu1.NW_012103732v1 2054498 0 + 5179401 C e chlSab2.chr4 1935044 0 - 91010382 C e cerAty1.NW_012002401v1 1665419 0 + 27333823 C e macNem1.NW_012011400v1 1201741 0 - 8785636 C e macFas5.chr6 87974339 0 - 181584905 C e rheMac8.chr6 87869934 0 - 180051392 C e nomLeu3.chr2 53847055 0 - 163208435 C a score=1081797.000000 s hg38.chr5_GL383530v1_alt 81641 102 + 101241 ttgttgaggtataatttgcatacacaataaaa-----------agcacaga-tttaaaggatatgctttgataagttttgataa-----------atgtgtgtcgtatgtaaccaccaccttaat s panTro5.chr5 20315602 102 + 181907262 ttgttgaggtataatttgcatacacaataaaa-----------agcacaga-tttaaaggatatgctttgataagttttgataa-----------atgtgtgtcgtatgtaaccaccaccttaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20327851 102 + 183735486 ttgttgaggtataatttgcatacacaataaaa-----------agcacaga-tttaaaggatatgctttgataagttttgataa-----------atgtgtgtcgtatgtaaccaccaccttaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4814511 102 - 13748885 ttgttgaggtataatttgcatacacaataaaa-----------agcacaga-tttaaaggatatgctttgataagttttgataa-----------atgtgtgtcatatgtaaccaccaccttaat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53847055 102 - 163208435 ttgttgaggtataatttgcatacacaataaaa-----------agcacaga-tttaaaggatacactttgataagttttgataa-----------atgtgtgtcatatgtaaccaccaccttaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87869934 102 - 180051392 ttgttgaggtataatttgtatctacaataaaa-----------agtacaga-tttaaaggatatgctttgataagttttgataa-----------atgtgtgtcgtatgtaaccaccacctcaat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87974339 102 - 181584905 ttgttgaggtataatttgtatctacaataaaa-----------agtacaga-tttaaaggatatgctttgataagttttgataa-----------atgtgtgtcgtatgtaaccaccacctcaat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1201741 102 - 8785636 ttgttgaggtataatttgtatctacaataaaa-----------agtacaga-tttaaaggatatgctttgataagttttgataa-----------atgtgtgtcgtatgtaaccaccacctcaat i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1665419 102 + 27333823 ttgttgaggtataatttgtatctacaataaaa-----------agtacaga-tttaaaggatatgctttgataagttttgataa-----------atgtgtgtcgtatgtaaccaccacctcaat i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1935044 102 - 91010382 ttgttgaggtataatttgtatctacaataaaa-----------agtacaga-tttaaaggatatgctttgataagttttgataa-----------atgtgtgtcgtatgtaaccaccacctcaat i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2054498 102 + 5179401 ttgttgaggtataatttgtatctacaataaaa-----------agtacaga-tttaaaggatatgctttgataagttttgataa-----------atgtgtgtcgtatgtaaccaccacctcaat i manLeu1.NW_012103732v1 C 0 C 0 s calJac3.chr2 112567181 102 + 204313951 ttgttgaggtataatttgcatatacaataaaa-----------agcacaga-tttaaaggatacactttgataagttttgataa-----------atgtgtgtcacatgtaaccaccaccctaat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45020607 102 + 71252344 ttgttgaagtataatttgcatacacaataaaa-----------agcacaga-tttaaaggatacactttgataagttttgataa-----------atgtgtgtcatatgtaaccaccaccctaat i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1452131 102 - 15889662 ttgttgaggtataatttgcatacacaataaaa-----------agcacaga-tttaaaggatacactttgataagttttgataa-----------atgtgtgtcacatgtaaccaccaccctaat i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 639884 102 - 10520994 ttattcgggtataatttgcatacacaataaaa-----------agcacaga-tttaaaggatacgctttgattagtttcgataa-----------atgtgtgtcccatgtaaccacaaccctagt i proCoq1.NW_012147189v1 I 16 C 0 s otoGar3.GL873536 1343791 117 - 29863360 TTAttggggtataatttgcatacacaataaaaaagcaataaacagcacaga-ttgaaaggatacactttga-------cactaaccagagcagtggtgtgtgtcccatgtaaccaccaccctacc i otoGar3.GL873536 I 1 C 0 s canFam3.chr3 14343564 99 + 91889043 ttgttgaggtataacttgcat--acagtacaa-----------agctgggaccttaagagaccagttttgt--ggttttgacag-----------atgtgtataccatgtaacccgcacactgat i canFam3.chr3 C 0 C 0 s dasNov3.JH570378 1280946 97 - 11655695 --Attgagatataacttgggttt--aataaaa-----------aatatcag-ttttatatgtacagtttgatgggtttttaca------------acatgtaaaccatgtaactaccatcccaat i dasNov3.JH570378 C 0 N 0 e micMur3.chr12 84850403 9272 + 108143057 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e colAng1.NW_012115488v1 7757257 2264 - 21726897 I a score=2963202.000000 s hg38.chr5_GL383530v1_alt 81743 310 + 101241 caagatgtctttatatttccatcatcctagaa-aggcctgcagattcttttgcagtcgc-ttcactcctccctttca---------ccaactctttaatttttttcatcaccattgattagttttatttgttctgc-aacttcatataaatgaaatattgtcttctttcattc--agtattgtctgggaaattaactatggtgttgcatgtatgaacaatttgttcatttctatttctgagtagg---------------------aaaatctgcttctccattcacctgttgttgggcatttgggttatttccggtctaggactgttatgaa-aatgctactatg s panTro5.chr5 20315704 310 + 181907262 caagatgtctttatatttccatcatcctagaa-aggcctgcagattcttttgcagtcgc-ttcactcctccctttca---------ccaactctttaatttttttcatcaccattgattagttttatttgttctgc-aacttcatacaaatgaaatattgtcttctttcattc--agtattgtctgggaaattaactatggtgttgcatgtatgaacaatttgttcattcctatttctgagtagg---------------------aaaatctgcttctccattcacctgttgttgggcatttgggttatttccggtctaggactgttatgaa-aatgctactatg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20327953 310 + 183735486 caagatgtctttatatttccatcatcctagaa-aggcctgcagattcttttgcagtcgc-ttcactcctccctttca---------ccaactctttaatttttttcatcaccattgattagttttatttgttctgc-aacttcatataaatgaaatattgtcttctttcattc--agtattgtctgggaaattaactatggtgttgcatgtatgaacaatttgttcatttctatttctgagtagg---------------------aaaatctgcttctccattcacctgttgttgggcatttgggttatttccagtctaggactgttatgaa-aatgctactatg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4814613 309 - 13748885 caagatgtctttatatttccatcatcctagaa-aggcctgcggattcttttgcagtcgc-ttcactcctccctttca---------ccaactctttaatttttttcatcaccattgattagttttatttgttctgc-aacttcatataaatgaaatattgttttctttcattc--agtattgtctgggaaattaactgtggtgttgcatgtatgaacaatttgttcatttctatttctgagtagg---------------------aaaatctgcttctcca-tcacctgttgatgggcatttgggttatttccggtctaggactgttatgaa-aatgctactatg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53847157 310 - 163208435 caagatgtctttatatttccatcatcctagaa-aggcctgcagattcttttgcagtcgt-ttcactcctccctttca---------ccaactctttaatttttttcatcaccattgattagttttatttgttctgg-aacttcatataaatgaaatattgtcttctttcattc--aatatggtctgggaaattaactatggtgttgcatgtatgaacaatttgttcatttctatttctgaatagg---------------------aaaatctgcttctccattcacctgttgatggacatttgggttatttctggtctaggactgttacgaa-aatgctactatg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87870036 310 - 180051392 caagatgtctttatatttccatcatcctagaa-aggcctgcagattcttttgcagtcac-ttcactcctccctttca---------ccaactctttaatttttttcatcaccattgattagttgtatttgttctag-aacttcatataaatgaaatactgtcttctttcattc--agtattgtctgggaaattaactatggtgttgcatgtatgaacaatttgttcatttctaattctgagtagg---------------------aaaatctgcctctccattcacctgttgatggacatttgggttatttccggtctaggactgttatgaa-aatgctgctatg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87974441 310 - 181584905 caagatgtctttatatttccatcatcctagaa-aggcctgcagattcttttgcagtcac-ttcactcctccctttca---------ccaactctttaatttttttcatcaccattgattagttgtatttgttctag-aacttcatataaatgaaatactgtcttctttcattc--agtattgtctgggaaattaactatggtgttgcatgtatgaacaatttgttcatttctaattctgagtagg---------------------aaaatctgcctctccattcacctgttgatggacatttgggttatttctggtctaggactgttatgaa-aatgctgctatg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1201843 310 - 8785636 caagatgtctttatatttccatcatcctagaa-aggcctgcagattcttttgcagtcac-ttcactcctccctttca---------ccaactctttaatttttttcatcaccattgattagttgtatttgttctag-aacttcatataaatgaaatactgtcttctttcattc--agtattgtctgggaaattaactatggtgttgcatgtatgaacaatttgttcatttctaattctgagtagg---------------------aaaatctgcctctccattcacctgttgatggacatttgggttatttccggtctaggactgttatgaa-aatgctgctatg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1665521 310 + 27333823 caagatgtctttatatttccatcatcctagaa-aggtctgcagattcttttgcagtcac-ttcactcctccctttca---------ccaactctttaatttttttcatcaccattgattagttgtatttgttccag-aacgtcatataaacgaaatactgtcttctttcattc--agtattgtctgggaaattaactatggtgttgcatgtatgaacaatttgttcatttctaattctgagtagg---------------------aaaatctgcctctccattcacctgttgatggacatttgggttatttccggtctaggactgttacgaa-aatgctgctatg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1935146 310 - 91010382 caagatgtctttatatttccatcatcctagaa-aggtctgcagattcttttgcagtcac-ttcactcctccctttca---------ccaactctttaatttttttcatcaccattgattagttgtatttgttctag-aacttcatataaatgaaatactgtcttctttcattc--agtattgtctgggaaattaactatggtgttgcatgtatgaacaatttgttcatttctaattctgagtagg---------------------aaaatctgcttctccattcacctgttgatggacatttgggttatttccggtctaggactgttatgaa-aatgctgctatg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2054600 310 + 5179401 caagatgtctttatatttccatcatcctagaa-aggtctgcagattcttttgcagtcac-ttcactcctccctttca---------ccaactctttaatttttttcatcaccattgattagttgtatttgttctag-aacttcatataaatgaaatactgtcttctttcattc--agtattgtctgggaaattaactatggtgttgcatgtatgaacaatttgttcatttctaattctgagtagg---------------------aaaatctgcctctccattcacctgttgatggacatttgggttatttccggtctaggactgttacgaa-aatgctgctatg i manLeu1.NW_012103732v1 C 0 C 0 s calJac3.chr2 112567283 311 + 204313951 caagatgtctttatatttccatcatcctagaa-agccctgcagattcttttgcagtcat-ttcactcctccctttta---------ccaactctgtaatttgtttcattgccactgattagttttatttgttctgg-agcttcatataaataaaatgctgtcttcttttattc--agtattgtgtgggaaattaactatggtgttgcatgtgtgaacagtttattcatttctatttctgagtagt---------------------ataatcgacttctccattcacctgttgatggacatttttgttatttccattctagggctgttaccaacagtgctactata i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45020709 311 + 71252344 caagatgtctttatatttccatcattctagaa-agctctgcagattcttttgcagtcat-tttactcctccctttta---------ccaactctgtaatttatttcattgccactgattagttttatttgttctgg-agcttcatataaataaaatactgtcttcttttattc--agtattgcgtgggaaattaactgtgatgttgcacgtgtgaacaatttgttcatttctatttctgagtact---------------------ataatctgcttctccattcacctgttgatggatatttttgttatttccattctagggctgttatgaacaatgctactatg i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1452233 311 - 15889662 caagatgtctttatatttccatcatcctagaa-agccctgcagattcttttgcagtcat-ttcactcctccctttta---------ccaactctgtaatttgtttcattgccactgattagttttatttgttctgg-agcttcatataaataaaatactgtcttcttttattc--agtattgtgtgggaaattaactatggtgttgcacgtgtgaacaattcgttcatttctatttctgagtatt---------------------ataatctgcttctccattcacctgttgatgaacatttttgttatttccattctagggctgttatgaacaatgctactgtg i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 639986 318 - 10520994 caagatgccttaacatttccgtcatcctggag-agccctgcgggtctctttgcagtcac-tctgctcctccctttcacccagccttccactgctctcattttttttgtcatcattgattaattttgtttgctttgg-aacttcatatacatgaaatactaacttcttcaa-----aataacatctggga----gactatggtgttgcatgtacaaatagttgtttcatttttatttctgagtagg----------------ttaccacaagttttttctccattcacctgtcaataaatatttggattattcccagttcaggactgttacgaacaatgctactgtg i proCoq1.NW_012147189v1 C 0 C 0 s otoGar3.GL873536 1343908 314 - 29863360 catgatgcctttacatttccatcatccgagaa-agccccacaggtccctctgcaggcaa-tccactcctcccttccaaccaggcttccactgctctaa--ttttttgtcaccattgattagttttgtttgttttggaaaccttacatacacgaagtact-ttttattcag-----aataacatctggga----gattgtggtgttgcaggtacaaatagtgagttcatttttatttctgagtagc----------------ttactgcaag-tgtttctctattcccctgtcaatggacatttggatcattcccag-tagggatggttatgagcaatgctgtgatg i otoGar3.GL873536 C 0 I 8869 s canFam3.chr3 14343663 335 + 91889043 caagatg-caaagtatatccatcatcccagaacactccctcctgtccctttgcaatgatgtttatccctctctttcattcaggcatccaccaatgtgat---tttgagcataagagattagttctgtttgttctag-aactttatataaatgaaatattgacttctttcattcaaaataatgtttgtgagattatctatggtgttgcatgtataaacaatttcttcatttctatttctgagtgagatttcatcatatcactgtaccataaattgttcctccattcacccattgatggacactt-----attcccagtttgggactcctataaacaatgtta-tatg i canFam3.chr3 C 0 C 0 e micMur3.chr12 84850403 9272 + 108143057 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e colAng1.NW_012115488v1 7757257 2264 - 21726897 I a score=8609631.000000 s hg38.chr5_GL383530v1_alt 82053 980 + 101241 agat--tgtattcaaatctttttgctttaatacacctttttattttgagatttttt-agattcacgtgtgattttaagacataacacagagagattccgtgtatcctttattcagttttctccagtagtaac--atcttacagaattatagtacagtatcatgaccagg-aattgacattgttatcatctactgat-gttatttagatttcccagttttac-----atgtactcgagtgtgtgtgtg------------------------tatatttagttctagacaattttatttcatgt-----------------------gtagttttgcatattcaccacccctgtc------agaacagttttgtcaccacaaagatctcccgcattgccctttaataaccacatacatctcctccatccccaacccctggaaatgagtaatatattctccatctctataatcttgttatttcaagaatgctatttaaacggaatcatataatatgcaacttttaagattgacatttttcactcagcatccttcccttgagatttatctaagctgtgtgtatatcaatggg-tttccttcccatcgaaggttgtttc--tagtttttggctgttactaataaagctgctgtgaacattagtgtacatgtttttgtgtaaagataagttttcat-tgctctggtataaatgcccaagagcacaattgctgggtcatatggtgatagtatgtttagttttatataaaactgctgagctgttttccagaataacggtaccgttttacatttccagcatcattgcaccggtgagccaacttctcagca---tcatc---agcatt----------tgatgttgtcactc--ttttttatctgagctattcttacaggtgtgcagtgatatctcactgtagttttaatttgtttctttaatggttaatggtgttgaacatcttttcatgtactcatttgccatctatgtatctgtcttggtaaaatatcttttccatgtct-------tttgtccattttctgtttgaa---tggtg--tttcttt s panTro5.chr5 20316014 981 + 181907262 agat--tgtattcaaatctttttgctttaatacacctttttattttgagatttttttagattcacgtgtggttttaagacataacacagagagattccgtgtatcctttattcagttttctccagtagtaac--atcttacagaattatagtacagtatcatgaccagg-aattgacattgttatcatctactgat-gttatttagatttcccagttttac-----atgtactcgagtgtgtgtgtg------------------------tatatttagttctagacaattttatttcatgt-----------------------gtagttttgcatattcaccacccctgtc------agaacagttttgtcaccacaaagatctcctgcattgccctttaataaccacatacatctcctccatccccaacccctggaaatgagtaatatattctccatctctataatcttgttatttcaagaatgctatttaaatggaatcatataatatgcaacttttaagattgacatttttcactcagcatccttcccttgagatttatctaagctgtgtgtatatcaatggg-tttccttcccatcgaaggttgtttc--tagtttttggctgttactaataaagctgctgtgaacattagtgtacatgtttttgtgtaaagataagttttcat-tgctctggtataaatgcccaagagcacaattgctgggtcatatggtgatagtatgtttagttttatataaaactgctgagctgttttccagaataacagtaccattttacatttccagcatcattgcactggtgagccagcttctcagca---tcatt---agcatt----------tgatgttgtcactc--ttttttatctgagctattcttacaggtgtgcagtgatatctcactgtagttttaatttgtttctttaatggttaatggtgttgaacatcttttcatgtactcatttgccatctatgtatctgtcttggtaaaatatcttttccatgtct-------tttgtccattttctgtttgaa---tggtg--tttcttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20328263 981 + 183735486 agat--tgtattcaaatctttttgctttaatacacctttttattttgagatttttttagattcacgtgtggttttaagacataacacagagagattccgtgtatcctttattcagttttctccagtagtaac--atcttacagaattatagtacagtatcatgaccagg-aattgacattgttatcatctactgat-gttatttagatttcccagttttac-----atgtactcgagtgtgtgtgtg------------------------tatatttagttctagacaattttatttcatgt-----------------------gtagttttgcatattcaccacccctgtc------agaacagttttgtcaccacaaagatctcctgcattgccctttaataaccacatacatctcctccatccccaacccctggaaatgagtaatatattctccatctctataatcttgttatttcaagaatgctatttaaatggaatcatataatatgcaacttttaagattgacatttttcactcagcatccttcccttgagatttatctaagctgtgtgtatatcaatggg-tttccttcccatcgaaggttgtttc--tagtttttggctgttactaataaagctgctgtgaacattagtgtacatgtttttgtgtaaagataagttttcat-tgctctggtataaatgcccaagagcacaattgctgggtcatatggtgatagtatgtttagttttatgtaaaactgctgagctgttttccagaataacagtaccattttacatttccagcatcattgcaccggtgagccagcttctcagca---tcgtt---agcatt----------tgatgttgtcactc--ttttttatctgagctattcttacaggtgtgcagtgatatctcactgtagttttaatttgtttctttaatggttaatggtgttgaacatcttttcatgtactcatttgccatctatgtatctgtcttggtaaaatatcttttccatgtct-------tttgtccattttctgtttgaa---tggtg--tttcttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4814922 978 - 13748885 agat--tgtattcaaatctttttgtTTTAATACACctttttattttgag--ttttttagattcacgtgtggttttaagacataacacagagagattccgtgtatcctttattcagttttctccagtagtaac--atcttacagaattatagtacagtatcatgaccagg-aattgacattgttatcatctactgat-gttatttagatttcccggttttac-----atgtactccagtgtgtgtgtg------------------------tatatttagttctagacaattttatttcatgt-----------------------gtagttttgcatatccacca-ccctgtc------agaacagttttgtcaccacaaagatctcctgcattgccctttaataaccacatacatctcctccatccgcaatccctggaaatgagtaatatattctccatctctataatcttgttatttcaagaatgctatttaagtggaatcatgtaatatgcaacttttaagattgacatttttcactcagcatccttcccttgagatttatctaagctgtgtgtatatcaatggg-tttccttcccatcgaaggttgtttc--tagtttttggctgttactaataaagctgctgtgaacattagtgtacatgtttttgtgtaaagataagttttcat-tgctctggtataaatgcccaagagcacaattgctgggtcatatggtgatagtatgtttagtttaacataaaactgctgagctgttttccagaataacagtaccgttttacatttccagcatcattgcaccagtgagccggcttctcagca---tcatc---agcatt----------tgatgttgtcactc--ttttttatctgagctattcttacagttgtgcagtgatatctcactgtagttttaatttgtttctttaatggttaatggtgttgaacatcttttcatggactcatttgccatctatgtatctgtcttggtaaaatatcttttccatgtct-------tttgtccattttctgtttgaa---tggtg--tttcttt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53847467 979 - 163208435 agat--tgtgttcaaatctttttgttttaatacacctttttattttgagatttttt-agattcacatgtggttttaagacataacacggagagattccgtgtatcctttattcagttttctcctgtagtaac--atcttacagaattataggacagtatcatgaccagg-aattgacatcgttatcatctactaat-gttatttagatttcctagttttac-----atgtactcgagtgtgtgtgta------------------------tatatttagttctaggcaattttatttcatgt-----------------------gtagttttgcgtattcaccacccctgtc------agaacagttttgtcaccacaaagatctcctgcattgccctttaataaccacatacatctcctccatccccaacccc-ggaaatgagtaatatattctccatctctataatcttgttatttcaagaatgctatttaaatgggatcatataatatgcaacttttaagattgacatttttcactcagcatccttcccttgagatttatctaagttgtgtgtatgtcaatggg-tttccttcccatcgaaggttgtttc--tagtttttggctgttactaataaagctgctgtgaacattagtgtacatgtttttgtgtaaagataagttttcat-tgctctggtataaatgcccaagagcacaattgctgggtcatatggtgatagtatgtttagttttatataaaactgctgagctattttccagaataacggtactgttttacatttccagcatcattgcaccggtgagccagcttctcagca---tcatc---agcatt----------tgatgttgtcactg--ttttttatctgagctattcttacaggtgtgcagtgatatctcgctgtagttttaatttgtttctttaatggttaatggtgttgaacatcttttcatgtactcatttgccatctatatgtctgtcttggtaaaatatcttttccatgtct-------tttgtccattttctgtttgaa---tggtg--tttcttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87870346 982 - 180051392 agat--tgtattcaaatctttttgttttaatacgcccttttattttgagatatttttagattcacgtgtggtttgaagacataacacggagagattccgtgtgcactttattcagttttctccagtggtaac--atcttacagaattatagtacagtatcatgaccagg-aattgatgttgatatcatctactgat-gttctttagatttcccagttttac-----atgtactc--gtgtgtgtgtg------------------------tgtatttagttctaggcaattttatttcatgt-----------------------gtagctttgtatattcaccacccctgtc------agaacagttttgtcaccacaaagatctcctgcgttgccctttaataaccgcatacatctcctccatccccaacccctggaaatgagtaatatattctccatctctataatcttgttacttcaagaatgctatataaatggaatcatataatatgcaacttttaagattgacatttttcactcagcatccttcccttgagggttatctaagttatatatttatcaatgggttttccttcccattgaaggttgtttctatagtttttggctcttactaacaaagctgctatgaacattagtgtacgtgtttttgtgtaaagataagttttcat-tgctctggcataaatgcccaagaacacaattgctgagtcatatggtgatagtatgtttagttttgtataaaactgctgagctgttttccagaataacagtaccattttacatttccagcgtcattgctccagtgagccagcttctcagca---tcatc---agcatt----------tgatgttgtccctg--ttttttatctgagctattcttacaggtgtgcagtgatctctcactgtagttttaatttgtttctttaatggttaatggtgttgaacatcttttcgtgtactcatttgccatctatatatctgtcctggtaaaatatctcttccatatct-------tttgtccattttctgtttgaa---ttgtc--tttcttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87974751 982 - 181584905 agat--tgtattcaaatctttttgttttaatacgcccttttattttgagatatttttagattcacgtgtggtttgaagacataacacggagagattccgtgtgcactttattcagttttctccagtggtaac--atcttacagaattatagtacagtatcatgaccagg-aattgatgttgatatcatctactgat-gttctttagatttcctagttttac-----atgtactc--gtgtgtgtgtg------------------------tgtatttagttctaggcaattttatttcatgt-----------------------gtagctttgtatattcaccacccctgtc------agaacagttttgtcaccacaaagatctcctgcattgccctttaataaccgcatacatctcctccatccccaacccctggaaatgagtaatatattctccatctctgtaatcttgttacttcaagaatgctatataaatggaatcatataatatgcaacttttaagattgacatttttcactcagcatccttcccttgagggttatctaagttatatatttatcaatgggttttccttcccattgaaggttgtttctatagtttttggctcttactaacaaagctgctatgaacattagtgtacgtgtttttgtgtaaagataagttttcat-tgctctggcataaatgcccaagaacacaattgctgagtcatatggtgatagtatgtttagttttgtataaaactgctgagctgttttccagaataacagtaccattttacatttccagcgtcattgctccagtgagccagcttctcagca---tcatc---agcatt----------tgatgttgtccctg--ttttttatctgagctattcttacaggtgtgcagtgatctctcactgtagttttaatttgtttctttaatggttaatggtgttgaacatcttttcgtgtactcatttgccatctatatatctgtcttggtaaaatatctcttccatatct-------tttgtccattttctgtttgaa---ttgtc--tttcttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1202153 982 - 8785636 agat--tgtattcaaatctttttgttttaatacgcccttttattttgagatatttttagattcacgtgtggtttgaagacataacacggagagattccgtgtgcactttattcagttttctccagtggtaac--atcttacagaattatagtacagtatcatgaccagg-aattgatgttgatatcatctactgat-gttctttagatttcccagttttac-----atgtactc--gtgtgtgtgtg------------------------tgtatttagttctaggcaattttatttcatgt-----------------------gtagctttgtatattcaccacccctgtc------agaacagttttgtcaccacaaagatctcctgcattgccctttaataaccgcatacatctcctccatccccaacccctggaaatgagtaatatattctccatctctataatcttgttacttcaagaatgctatataaatggaatcatataatatgcaacttttaagattgacatttttcactcagcatccttcccttgagggttatctaagttatatatttatcaatgggttttccttcccattgaaggttgtttctatagtttttggctcttactaacaaagctgctatgaacattagtgtacgtgtttttgtgtaaagataagttttcat-tgctctggcataaatgcccaagaacacaattgctgagtcatatggtgatagtatgtttagttttgtataaaactgctgagctgttttccagaataacagtaccattttacatttccagtgtcattgctccggtgagccagtttctcagca---tcatc---agcatt----------tgatgttgtccctg--ttttttatctgagctattcttacaggtgtgcagtgatctctcactgtagttttaatttgtttctttaatggttaatggtgttgaacatctttttgtgtactcatttgccatctatatatctgtcttggtaaaatatctcttccatatct-------tttgtccattttctgtttgaa---ttgtc--tttcttt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1665831 982 + 27333823 agat--tgtattcaaatctttttgttttaatacgcccttttattttgagatatttttagattcacgtgtggtttgaagacataacacggagagattccgtgtgcactttattcagttttctccagtggtaac--atcttacagaattatagtacagtatcatgaccagg-aattgatgttgatatcatctactgat-gttctttagatttcccagttttac-----atgtactc--gtgtgtgtgtg------------------------tatatttagttctaggcaattttatttcatgt-----------------------gtagctttgtatattcaccacccctgtc------agaacggttttgtcaccacaaagatctcctgcattgccctttaataaccgcatacatctcctccatccccaacccctggaaatgagtaatatattctccatctctataatcttgttacttcaagaatgctatataaatggaatcatataatatgcaacttttaagattgacatttttcactcagcatccttcccttgagagttatctaagttatatgtttatcaatgggttttccttctcattgaaggttgtttctatagtttttggctcttactaataaagctgctatgaacattagtgtacgtgtttttgtgtaaagataagttttcat-tgctctggcataaatgcccaagaacacaattgctgagtcatatggtgatagtatgtttagttttgtataaaactgctgagctgttttccagaataacagtaccattttacatttccagcatcattgctccggtgcgccagcttctcagca---tcatc---agcatt----------tgatgttgtccctg--ttttttatctgagctattcttacaggtgtgcggtgatctctcactgtagttttaatttgtttctttaatggttaatggtgttgaacatcttttcatgtactcatttgccatctatatatctgtcttggtaaaatatctcttccatgtct-------tttgtccattttctgtttgaa---ttgtc--tttcttt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1935456 973 - 91010382 agat--tgtattcaaatctttttgttttaatacacctttttactttgagatatttttagattcatgtatggtttgaagacataacacggagagattccgtgtaccctttattcagttttctccagtggtaac--atcttacagaattatagtacagtatcattaccagg-aattgatgttgatatcatctactgat-gttatttagatttcccagttttac-----atgtactc--gtgtgtgtgtg------------------------tatatttagttctgggcaattttatttcatgc-----------------------gtagcgttgcatattcaccacccctgtc------agaaca-ttttgtcaccacaaagatctcctgcattgccctttaataaccacatacatctcctccatccccaacccctggaaatgagtaatatattctccatctctataatcttgttacttcaagaatgctatataaatggaatcatataatatgcaacttttaagattgacatttttcactcagcatccttcgtttgagagttatctaagttatatgtttatcaatgggttttcttttccattgaaggttgtttctatagtttttggctcttactaataaagctgctatgaacattagtgtatgtgtttttgtgtaaagataagttttcat-tgctctg--------gcccaagagcacaattgctgagtcatatggtgatagtatgtttagttttatataaaactgctgagctgttttccagaataacagtaccattttacatttccagcgtcattgctctggtgcgccagcttctcagcg---tcatc---ggcatt----------tgatgttgtccctg--ttttttatctgagctattcttacaggtgcgcagtgatctctcactgtagttttaatttgtttctttaatggttaatggtgttgaacatcttttcgtgtactcatttgccatctatatgtctgtcttggtaaaatatctcttccatgtct-------tttgtccattttctgtttgaa---ttgtc--tttcttc i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2054910 984 + 5179401 agat--tgtattcaaatctttttgttttaatacgcctttttattttgagatatttttagattcatgtgtggtttgaagacataacacggagagattccgtgtgcactttattcagttttctccagtgataac--atcttacagaattatagtacagtatcatgaccagg-aattgatattgatatcatctactgat-gttctttagatttcccagttttac-----atgtactcgtgtgtgtgtgtg------------------------tgtatttagttctaggtaattttatttcatgt-----------------------gtagctttgtatattcaccacccctgtc------agaacagttttgtcaccacaaagatctcctgcattgccctttaataaccgcatacatctcctccatccccaacccctggaaatgagtaatatattctccatctctataatcttgttacttcaagaatgctatataaatggaatcatataatatgcaacttttaagattgacatttttcactcggcatccttcccttgagggttatctaagttatatatttatcaatgggttttccttcccattgaaggttgtttctatagtttttggctcttactaacaaagctgctatgaacattagtgtacgtgtttttgtgtaaagataagttttcat-tgctctggcataaatgcccaagaacacaattgctgagtcatatggtgatagtatgtttagttttgtataaaactgctgagctgttttccagagaaacagtaccattttacatttccagcgtcattgctccggtgagccagcttctcagca---tcatc---agcatt----------tgatgttgtccctg--ttttttatctgagctattcttacaggtgtgcagtgatctctcactgtagttttaatttgtttctttaatggttaatgatgttgaacatcttttcgtgtactcatttgccatctatatatctgtcttggtaaaatatctcttccatatct-------ttcgtccattttctgtttgaa---ttgtc--tttcttt i manLeu1.NW_012103732v1 C 0 C 0 s calJac3.chr2 112567594 1000 + 204313951 agat--tatattcaaatctttttgttttaatacaactttttattttgagatagttttagattcacgtgtggttttaagacctaacatgcagagattccgtgtactctttattcagttttctccagtggtaac--atgttacagaattatcgtacagtatcatgactgag-aattgacatcaatatcatctactgat-gttatttagatttcccagttttac-----atgtactcatgtgtgtgcgcg------tgtgtgtgtgtgtgtgtgtgtatttagttctaggcaattttatcgcatgt-----------------------gtagttttgcatattcataacccctgtc------agaacagttttgtcaccacaaagatctccttcattgccctttaataaccacatacatctcttccatctccaacccttggaaatgactaacatgttgtccatctctataatcttgttatttcaagaatgctacataaatggaatcataaaatatacaacttttaagattgacatttttcactcagcatctttcccttgagatttatctaagctgtgtgtatatcaatgggttttccttcccattgaaagttgtttc--tagtttttggcacttactaatgaaggtgctatgaacatcagtgtacatgtttttgtgtgaagat--attttcacacaaaatatcatacatgcctaagagcacaattgccaggtcatatgatgatagtatgtttagttttatataaaactgctgagctgttttccagaataacagtaccactttacattcccaggatcgttacaccagtaagccagcttctcagca---ccatc---agcatt----------tgatattgtcattgttttttttatctgagctattcttacaggtatgcagtggtatctcactgtagttttaatttgtttctttaatggttaatggtgttgaacatcttttcatgtactcatttgccatctgtatgtctgttttggtaaaatgtttcttct-tgtct-------tttgttcattttcttttttaa---ttgtc--tttcttt i calJac3.chr2 C 0 I 13003 s saiBol1.JH378106 45021020 966 + 71252344 agat--tatattcaaatctttttgtTTTAATACAACT-----ttttgagatatttttagattcacgtgtggttttaagacataacatggagagattccatgtactctttattccgttttctccaatggtaac--atcttacagaattatagtacagtatcatgaccaag-aattgacatcaatatcatgtactgat-gttatttagatttcccagttttac-----atgtatttgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtatttagttctaagcaattttatcgcatgt-----------------------gtagttttgcatattcacaacacctgtc------agaacagttttgtcaccacaaagatctccttcattgccctttaataaccacgtacatctcttccatctccaactcttggaaatgactaatatgttctctatctctataatcttgttatttcaagaatgctatataaatggaatcataaaatatacaacttttaagattgatatttttcactcagtatccttcccttgagatttatctaagttgtgtgtatatcaatggg--------------------------------ttttggcacttactaatgaagctgctatgaacatcagtgtacgtgtttttgtgtgaagat--gttttcat-tgctctgacatacatgcccaagagcacaattggcaggtcatatgatgatagtatgtttagttttatataaaactgctgagctattttccagaataacggtactgttttacattcccagcatcgttacaccagtaagccaacttctcagca---tcatc---agcatt----------tgatgttgtcactg--ttttttatctgagctattcgtacaggtatgcagtgatatctcactgtaa--ttaatttgtttctttaatggttaatggtgttgaacatcttttcatgtactcatttgccatctgtatatctgttttggtaaaatgtgtcttct-tgtct-------tttgttcattttcttttttaa---ttgtc--tttcttt i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1452544 1022 - 15889662 agat--tatattcaaatctttttgttttaatgcaactttttattttgagatatttttagattaatgtgtggttttaagacataacatggagagtttccatgtactctttattcagttttctctagtggtaac--atcttacagaattatggtacagtatcgtgaccaag-aattgacatcgatatcatctactgat-gttattaagatttcccagttttac-----atgtactcgtgtgtgtgtgtg------tgtgtgtgtgtgtgtgtgtgtatttagttctaggcaattttattgcatattcacaacccctgtcagaagtagaacagttttgcatattcacaacccctgtcagaaatagaacagttttgtcaccacaaagatctccttcattgccctttaataaccgcatacatctcttccatctccaacccttggaaatgactaatatgttctccatctctataatcttgttatttcaggaatgctatataaatggaatcataaaatatacaac-tttaagattgacatttgtcactcagcatccttcccttgagatttatctaagttgtgtgtatatcaatgggttttccttcccgttgaaagttgtttc--tagtttttggcacttactaatgaagcttctatgaacatcagtgtacatgtttatgtgtgaagat--gttttcat-tgctctggcatacatgcccaagagcacaattgccaggtcatatgatgatagtatgtttagttttatataaaactgctgagctattttccagaataacggtaccgttttacattcccagcatcgttacaccagtaagccagctt---agca---tcatc---agcatt----------tgatgttgtcactg--ttttttacctgagctgttcttacaggtatgcagtggtatctcactgtagttttaatttgtttctttaatggttaatggtgttgaacatcttttcatgtactcatttgccatctgtatatctgttttggtaaaatgtttcttct-tgtct-------tttgttcattttctcttttaa---ttgtc--tttcttt i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 640304 1007 - 10520994 agac--tgta--caaatatttttgttttaataaaactttctattttgaaacatttgtaggctcatatgtagttgtaagacatgatatcgagaaattccatgcacactttattcaattctctctaatggtaattagtcttacaaaattatagtacagtatcactagtaggaaattgccgttaatatgatccactgat-cttattcagatctcccagttttac-----atgtactc--gtgtgtgtgtg------------catgcatgcacgtgtatttagttctaagcagttttatcccatga-----------------------gtagctttgcatatctaccaccactgtcagaaacagaacagttctgtcaccacaaggatcccttatgttgctcttttataaccacacacatctcttccatcccttagcccttgaagccactcatatgttctccatctctataattttgtcacttcgagaatgtgatataaatggaattatgcagcatgcaacttgtaagattggcatttttcattcaacttcattctcttgagattt---taaatc-tgtgtgtatcaatgatttttccttcccattgaaggttatttc--tagtttttagctattactaaaaatgctgtcatgaacattagtgtacaggtttttgtgtgaacatatgttttcat-ttctctggcataaatgcccaagggcatgattgctgggatgtatggtaatattgtgtttagttttatatgaaactaccaaactatttttcagagcgactataccattgtacattcccagggttagtgtacgattgatccaacttctttgcaccttcatc---agcatttgatgttgtgtgatgttgtcacta--tgtcttattt-agctactcttatagttatgtggtaatatctctttgtag-tttaatacatttcattaatagttaatgatgttgaacatcttttcgtgtgcttatgtgccatctatatatctgttttggtgaaatatctcttc-atgctt-------tttgcccattttctgattgga---ttatctgtttcttt i proCoq1.NW_012147189v1 C 0 C 0 s canFam3.chr3 14343998 980 + 91889043 agatcatgtgtacaactctttttgttttaatgaaaccttttattttgagataattttagattcacatgtaattttaacaagtaatatggagagagtccacttactgtatatttagttttctccagtggtaac--atcctgtgaaattatgatatgttattacaactaggaaattgacattgatataattcacggatcctcattcagatttcccagttctactttttgtgtgtgtgcacatatgtgtg------------------------tgcctttatttctaggccattttatcccacgt-----------------------gtggttttgtatatttactgctgcagtc------ag---------------atacagatctctcatactgcctttttataaccacaggcatctcccgtatccctaactcccagaaaccactaatctgctctccatcttcataatttagtgacttcaagaacatcatataaatgaaatcacacagcatataacttttgagattggagttttttactcaacataattcgcttgagatttatctaacttctacctctaccactagttgttgcttcctattggagtttgtttt--tgaattggggctattataagtaaagctgtcatgaacattagtggagcagcttttgtgtgaacataagttttcat-ttctctggcataaatgctcaagagtgcaattgctgggtcatgtggtagtaataagtttcattta--aagaaactgctaacctgttttctagagtgtctgtaccattttgcatttccagcagctgagtatgaatgatgcaaatcttctgca---tcctcaatagcatt----------tgatgttgtcactt--tatatt-tct-agccatcctt---tatttagtgtgatacctcatag-ggatttaatttgtgtctttaatggctaatgatgctatatattttttcatgtgcttcttggccatttgtttatctcttttggtgagtgatctcttc-atgtctctacatacttacccttcttctgtgtggacttttttg--tttcttt i canFam3.chr3 C 0 C 0 e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e colAng1.NW_012115488v1 7757257 2264 - 21726897 I a score=134573.000000 s hg38.chr5_GL383530v1_alt 83033 24 + 101241 actgttgagttatgagaattcttt s panTro5.chr5 20316995 24 + 181907262 actgttgagttatgagaattcttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20329244 24 + 183735486 actgttgagttatgagaattcttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4815900 24 - 13748885 actgttgagttatgagaattcttt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53848446 24 - 163208435 actgttgagttgtgagaattcttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87871328 19 - 180051392 act-----gttatgagaattcttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87975733 19 - 181584905 act-----gttatgagaattcttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1203135 19 - 8785636 act-----gttatgagaattcttt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1666813 19 + 27333823 act-----gttatgagaattcttt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1936429 19 - 91010382 act-----gttatgagaattcttt i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2055894 19 + 5179401 act-----gttatgagaattcttt i manLeu1.NW_012103732v1 C 0 C 0 s saiBol1.JH378106 45021986 20 + 71252344 actgttgagttatgagaa----tt i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1453566 23 - 15889662 actgttgagttatgagaatt-ttt i aotNan1.NW_018506370v1 C 0 C 0 s proCoq1.NW_012147189v1 641311 24 - 10520994 actgttgagttatgaggattcttt i proCoq1.NW_012147189v1 C 0 N 0 s canFam3.chr3 14344978 24 + 91889043 cctgtttactttcaagaattcttc i canFam3.chr3 C 0 C 0 e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e calJac3.chr2 112568594 13003 + 204313951 I e colAng1.NW_012115488v1 7757257 2264 - 21726897 I a score=31473.000000 s hg38.chr5_GL383530v1_alt 83057 5 + 101241 ttaaa s panTro5.chr5 20317019 5 + 181907262 TTTAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20329268 5 + 183735486 ttaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4815924 5 - 13748885 ttaaa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53848470 5 - 163208435 ttaaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87871347 5 - 180051392 ttaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87975752 5 - 181584905 ttaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1203154 5 - 8785636 ttaaa i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1666832 5 + 27333823 ttaaa i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1936448 5 - 91010382 ttaaa i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2055913 5 + 5179401 ttaaa i manLeu1.NW_012103732v1 C 0 C 0 s saiBol1.JH378106 45022006 5 + 71252344 TAAAA i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1453589 5 - 15889662 tTAAA i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14345002 5 + 91889043 ataga i canFam3.chr3 C 0 I 3729 e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e calJac3.chr2 112568594 13003 + 204313951 I e colAng1.NW_012115488v1 7757257 2264 - 21726897 I a score=1933327.000000 s hg38.chr5_GL383530v1_alt 83062 299 + 101241 aatttttaataaTttttaattgtgtgcgtacatagtaggtgtatatatctatggggtacatgagacgttttgatacaggcatgcaatgtgtaataatcacatcatggagaatgggatatctatcccctcaagcatttatcctttatgttagaagcaatccaattatactctttcagttatttttaaatgtactattaacttaatattgactatagtcaccctgttgtgctatcaaatagtaggtcttattcattgtttcttttt--gtacccattaactatcctcacctgcttcttaccct s panTro5.chr5 20317024 299 + 181907262 AATGTTTAATAATttttaattgtgtgcgtacatagtaggtgtatatatctatggggtacatgagacgttttgatacaggcatgcaatgtgtaataatcacatcatggagaatgggatatctatcccctcaagcatttatcctttatgttagaagcaatccaattatactctttcagttatttttaaatgtactattaagttaatattgactatagtcaccctgttgtgctatcaaatagtaggtcttattcattgtttcttttt--gtacccattaactatcctcacttgcttcttaccct i panTro5.chr5 C 0 C 0 s panPan2.chr5 20329273 299 + 183735486 aatttttaataaTttttaattgtgtgcgtacatagtaggtgtatatatctatggggtacatgagacgttttgatacaggcatgcaatatgtaataatcacatcatggagaatgggatatctatcccctcaagcatttatcctttatgttagaagcaatccaattatactctttcagttatttttaaatgtactattaagttaatattgactatagtcaccctgttgtgctatcaaatagtaggtcttattcattgtttcttttt--gtacccattaactatcctcacctgcttcttaccct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4815929 299 - 13748885 aatttttaataaTttttaattgtgtgcgtacatagtaggtgtatatatctatggggtacatgagacgttttgatacaggcatgcaatgtgtaataatcacatcatggagaatgggatatctattccctcaagcatttatcctttatgttagaagcaatccaattatactctttcagttatttttaaatgtactattaagttaatattgactatagtcaccctgttgtgctatcaaatagtaggtcttattcattgtttcttttt--gtacccattaactatcctcacctgcttcttaccct i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53848475 299 - 163208435 atttttaaataATttttaattgtgtgcgtacatagtaggtgtatatatttatggggtacatgagacgttttgatacaggcatgcaatgtgtaataatcatataatggagaatgagatatctatcccctcaagcatttatcctttatgttagaagcaatccaattatactcttttagttatttttaaatgtactattaagttaagattgactatagtcaccctgttgtgctatcaaatagtaggtcttattcattgtttcttttt--gtacccattaactatcctcacctgcttcttaccct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87871352 297 - 180051392 aatttttaataaTttttaattttgtgggtacatagtaggtgtatatatttatggggtacatgagatgttttgatacaggcaggcaatgtgtaataatcacatcatggacaatgggctatctgtcctctcaagcatttatcctttatgttagaagcaatccaattata--cttttagttatttttaaatgtactattaagttagtattgactatagtcaccctgttgtgctatcaaatagtaggtcttattcattgtttcttttt--gtacccattaactatcctcacctgcttcttaccct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87975757 297 - 181584905 aatttttaataatttttaattttgtgggtacatagtaggtgtatatatttatggggtacatgagatgttttgatacaggcaggcaatgtgtaataatcacatcatggacaataggctatctgtcctctcaagcatttatcctttatgttagaagcaatccaattata--cttttagttatttttaaatgtactattaagttagtattgactatagtcaccctgttgtgctatcaaatagtaggtcttattcattgtttcttttt--gtacccattaactatcctcacctgcttcttaccct i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1203159 297 - 8785636 aatttttaataaTttttaattttgtgggtacatagtaggtgtatatatttatggggtacatgagatgttttgatacaggcaggcaatgtgtaataatcacatcatggacaatgggctatctgtcctctcaagcatttatcctttatgttagaagcaatccaattata--cttttagttatttttaaatgtactattaagttagtattgactatagtcaccctgttgtgctatcaaatagtaggtcttattcattgtttcttttt--gtacccattaactatcctcacctgcttcttaccct i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1666837 299 + 27333823 aatttttaataaTttttaattttgtgggtacatagtaggtgtatatatttatggggtacatgagatgttttgatacaggcaggcaatgtgtaataatcacatcatggagaatgggctatctgtcctctcaagcatttatcctttatgttagaagcaatccaattatattcttttagttatttttaaatgtactattaagttagtattgactatagtcaccctgttgtgctatcaaatagtaggtcttattcattgtttcttttt--gtacccattaactatcctcacctgcttcttaccct i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1936453 299 - 91010382 aatttttaataatttttaattttgtgggtacatagtaggtgtatatatttatggggtacatgagttgttttgatacaggcaggcaatgtgtaataatcacatcatggagaatgggctatctgtcctctcaagcatttatcctttatgttagaagcaatccaattatattcttttagttatttttaaatgtactattaagttagtattgactatagtcacccggttgtgctatcaaatagtaggtcttattcattgtttcttttt--gtacccattaaccatcctcacctgctttttaccct i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2055918 297 + 5179401 aatttttaataaTttttaattttgtgggtacatagtaggtgtatatatttatggggtacatgagatgttttgatacaggcaggcaatgtgtaataatcacatcatggagaatgggctatctgtcctctcaagcatttatcctttatgttagaagcaatccaattata--cttttagttatttttaaatgtactattaagttagtattgactatagtcaccctgttgtgctatcaaatagtaggtcttattcattgtttcttttt--gtacccattaactatcctcacctgcttcttaccct i manLeu1.NW_012103732v1 C 0 C 0 s saiBol1.JH378106 45022011 295 + 71252344 AAAATGTGA--TTTTTTTACtttgtgggtacatagtaggtgtata----tatgggatacatgagaggttttgatgcaggcatgcaatgtgtaataatcacatcatggagaatggggtatctatcccctcaagcatttatcctttatgttagaaaaaatccaattatactcttttagttattcttaaaggtacaattaagttagtattgattatagtcaccccatggtgctatcaaatagtgggtcttactcattgtttctttttatgtacccattaactacccttacctgcttcttaccct i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018506370v1 1453594 294 - 15889662 ATTTTGTGAT-TTTTTTTACtttatgggtacatagtaggtgtata----tatgggatacatgagaggttttgatacaggcatgcaatgtgtaataatcacatcatggagaatggggtatctatcccttcaagcatttatcctttatgttagaaacaatccaattatactc--ttagttattcttaaaggtactattaagttagtattgattatagtcactccgttgtgctatcaaataatgggtcttattcattgtttctttttaggtacccattaactatccttacctgcttcttaccct i aotNan1.NW_018506370v1 C 0 I 13149 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e calJac3.chr2 112568594 13003 + 204313951 I e colAng1.NW_012115488v1 7757257 2264 - 21726897 I a score=46026.000000 s hg38.chr5_GL383530v1_alt 83361 12 + 101241 tccccctacccc s panTro5.chr5 20317323 12 + 181907262 tccccctacccc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20329572 12 + 183735486 tccccctagccc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4816228 12 - 13748885 tccccctacccc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53848774 12 - 163208435 tccccctatccc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87871649 12 - 180051392 gacccccacccc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87976054 12 - 181584905 gacccccacccc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1203456 12 - 8785636 gacccccacccc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1667136 12 + 27333823 gacccccacccc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1936752 12 - 91010382 gacccccacccc i chlSab2.chr4 C 0 I 67 s manLeu1.NW_012103732v1 2056215 12 + 5179401 gacccccacccc i manLeu1.NW_012103732v1 C 0 C 0 s saiBol1.JH378106 45022306 11 + 71252344 gcctcccacct- i saiBol1.JH378106 C 0 C 0 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e calJac3.chr2 112568594 13003 + 204313951 I e colAng1.NW_012115488v1 7757257 2264 - 21726897 I a score=54417.000000 s hg38.chr5_GL383530v1_alt 83373 14 + 101241 caatcccttaccaa s panTro5.chr5 20317335 14 + 181907262 ccatcccttaccaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20329584 14 + 183735486 caatcccttaccaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4816240 14 - 13748885 ccatcccttaccaa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53848786 14 - 163208435 ccatcccttaccaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87871661 12 - 180051392 --accccttaccaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87976066 12 - 181584905 --accccttaccaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1203468 12 - 8785636 --accccttaccaa i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1667148 12 + 27333823 --accccttaccaa i cerAty1.NW_012002401v1 C 0 C 0 s manLeu1.NW_012103732v1 2056227 12 + 5179401 --accccttaccaa i manLeu1.NW_012103732v1 C 0 C 0 s saiBol1.JH378106 45022317 14 + 71252344 caacctttcaccaa i saiBol1.JH378106 C 0 I 3967 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e calJac3.chr2 112568594 13003 + 204313951 I e colAng1.NW_012115488v1 7757257 2264 - 21726897 I e chlSab2.chr4 1936764 67 - 91010382 I a score=1900.000000 s hg38.chr5_GL383530v1_alt 83387 3 + 101241 aaa s panTro5.chr5 20317349 3 + 181907262 aaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20329598 3 + 183735486 aaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4816254 3 - 13748885 aaa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53848800 3 - 163208435 aaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87871673 3 - 180051392 cta i rheMac8.chr6 C 0 I 52 s macFas5.chr6 87976078 3 - 181584905 cta i macFas5.chr6 C 0 I 52 s macNem1.NW_012011400v1 1203480 3 - 8785636 cta i macNem1.NW_012011400v1 C 0 I 52 s cerAty1.NW_012002401v1 1667160 3 + 27333823 cta i cerAty1.NW_012002401v1 C 0 I 51 s manLeu1.NW_012103732v1 2056239 3 + 5179401 cta i manLeu1.NW_012103732v1 C 0 I 52 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45022331 3967 + 71252344 I e calJac3.chr2 112568594 13003 + 204313951 I e colAng1.NW_012115488v1 7757257 2264 - 21726897 I e chlSab2.chr4 1936764 67 - 91010382 I a score=4247801.000000 s hg38.chr5_GL383530v1_alt 83390 936 + 101241 gatgggattgccaggcgcggtggctcacgcctgtaatcccagcactttaggagactgaggcgggtggatcacgaggtcaggagatcacaaccatcccggctaacatggtgaaaccctatctctactaaaaatat-----------caaacaattagccgggcgtggtggcgggtgcctgtagtcccagctacttgggaggctgaggcaggaaaatcacttgaacgcggaaggtggaggttaagatgagctgaggtcacaccaccgcactccatcctgggcaacagagcaagactccatctc---aaaacaaaaa-----caaaaa-------------aacttgatttgagcccacagataagtgagaacatatgatgtttgtctttctgggtctggcttatttcacttaacataatgatctccttttccaaccacgttgttgcaaatgacaggatctcattctttttatggctgaatagtattccattttgtatatgtaccacatttcctttatccattcacctgctgatggacacttacgttgcttccaaatcttagctattgtgaacagtgcagcaataaacatgggagtgcaaatatctcttcgatttactgctttcctttcttttgggtatatacccagcagttaggattgctggattatatgctagctttatttttagttttttaagcaacctccaaactgtattccatagtagttgtactaatttgcattcccaccaacagtgtatgagggttcccttttctccacattcttgccagcatttattgttgcctgtcttttggatataagccattttaactTTCAttggcatctttattaaaagccactggatgtattttgtgggtctgtttctggattctgggttctcttctgtggctctctctggatggatctaggaatagatctagagtctgttccctaaaacactaccatactgtcttg s panTro5.chr5 20317352 940 + 181907262 gatgtgattgccaggcgcggtggctcacgcctgtaatcccagcactttaggagactgaggcgggtggatcacgaggtcaggagatcacaaccatcccggctaacatggtgaaaccctatctctactaaaaatat-----------aaaacaattagctgggagtggtggcgggtgcctgtagtcccagctacttgggaggctgaggcaggaaaatcacttgaacgcaggaggtggaggttatgatgagctgaggtcgcaccaccgcactccatcctgggcaacagagcaagactccatctc---aacacaaaaa-----caaaaa--------caaaaaacttgatttgagcccatagataagtgagaacatatgatgtttgtctttctgtgtctggcttatttcacttaacataatgatctccttttccaaccacgttgttgcaaatgacaggatctcattctttttatggctgaatagtattccattttgtatatgtaccgcatttcctttatccattcacctgctgatggacacttatgttgcttccaaatcttagctattgtgaacagtgcagcaatgaacatgggagtgcaaatatctctttgatttactgctttcctttcttttgggtgtatacccagcagt-aggattgctggattatatgctagctttatttttagttttttaagcaacctccaaactgtattccatagtggttgtactaatttgcattcccaccaacagtgtatgagggttcccttttctccacattcttgccagcatttattgttgcctgtcttttggatataagccattttaactTTCAttggtatctttattaaaagccactgggtgtattttgtgggtctgtttctggattctgggttctcttctgtggatctctctggatggatctaggaatagatctagagtctgttccccaaaacactaccatactgtcttg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20329601 935 + 183735486 gatgtgattgccaggcgcggtggctcacgcctgtaatcccagcactttaggagactgaggcgggtggatcacgaggtcaggagatcacaaccatcccggctaacatggtgaaaccctatctctactaaaaatat-----------aaaacaattagccgggcgtggtggcgggtgcctgtagtcccagctacttgggaggctgaggcaggaaaatcacttgaacgcggaaggtggaggttacgatgagctgaggtcacaccaccgcactccatcctgggcaacagagcaagactccatctc---aaaacaaaaa-----caaaaa-------------aacttgatttgagcccacagataagtgagaacatgtgatgtttgtctttctgtgtctggcttatttcacttaacataatgatctccttttccaaccacgttgttgcaaatgacaggatctcattctttttatggctgaatagtattccattttgtatatgtaccacatttcctttatccattcacctgctgatggacacttacgttgcttccaaatcttagctattgtgaacagtgcagcaataaacatgggagtgcaaatatctcttcgatttactgctttcctttcttttgggtatatacccagcagt-aggattgctggattatatgctagctttatttttagttttttaagcaacctccaaactgtattccatagtagttgtactaatttgcattcccaccaacagtgtatgagggttcccttttctccgcattcttgccagcatttattgttgcctgtcttttggatataagccattttaactTTCAttggcatctttattaaaagccactggatgtattttgtgggtctgtttctggattctgggttctcttctgtggctctctctggatggatctagaaatagatctagagtctgttccctaaaacactaccatactgtcttg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4816257 931 - 13748885 gatgtgattgccaggcgcggtggctcacgcctgtaatcccagcactttaggagactgaggcgggtggatcatgaggtcaggagatcacaaccatcccggctaacatggtgaaaccctatctctactaaaaatat-----------aaaacaattagctgggcgtggtggtgggtgcctgtagtcccagctacttgggaagttgaggcaggaaaatcacttgaatgcgggaggtggaggttacgatgagctgaggttgcaccaccgcattccatcctgggcaacagagcaagactccatctc---aaaacaaaaa-----caaaaa-----acaaaaaaaacttgatctgagcccgcagataagtgagaacatatgatgtttgtctttctgtgtctggcttatttcacttaacataatgatctccttttccaaccacgttgttgcaaatgacaggatctcattctttttatggctgaatagtattccattttgtatatgtaccgcatttcctttatccattcacctgctgatggacacttatgttgcttccaaatcttagctattgtgagcagtgcagcaataaacatgggagtgcaaatatctcttcgatctactgctttcctttcttttgggtatatacccagcagt-aggattgctggattatatgctagctttatttttagttgtttaagcaacctccaaactgtattccataatggttgtactaatttgcattcccaccaacagtgtatgaaggttcccttttctccacattcttgccagcatttattgttgcctgtcttttggatataagccattttaactTTCAttggcatctttattaaaagccactgggtgtattttgtgggtctgtttctggattctgggttctcttctgtggatctctctggatg------------gatctagagtctgttccctaaaacactaccatactgtcttg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53848803 930 - 163208435 gatttgattgccaggcgtggtggctcacacctataatcccagcactttgagagactgaagcaggtggatcacgaggtcaggagatcacaaccatcctggctaacatggtgaaaccctatctctactaaaaatac-----------aaaacaattagctgggtgtggtggcgggtgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttcaacctgggaggtggaggttgcagtgagctgagatcgcaccaccgcactccagcctgggcaacacagcaagactctgtctcaaaaaaaaaaaaa-----caaaaacaaacaaaaaaaaaccttgatttgagcccacagataagtgagaacatgtgatgtttgtctttctgtgtctggcgtatttcacataacagaatgatctccttttccaaccatgttgttgcaaatgacaggatctcattctttttatggctgaatagtattccattttgtatatataccgcatttcctttagccattcacctgttgatggacatttacgttgcttccaaatcttagctattgtgaacagtgcagcaataaacatgggagtgcagatatctcttcgatttactgctttcctttcttttgggtatataccgagcagt-aggattgctggatcatatgccagctttatttttagttttttaagcaacctccgaactgtattccatagtggttgtactaatttgcattc---------------------tctcttttctccacattcttgccagcatttattgttgcatgtcttttggatataagccattttaactTTCAttggcatctttattaaaagccactgggtgtattttgtgggtctgtttctggattctgggttctcttctgtggatctctctggatggatctaagaatagatctagagtctgttccctaaaacactaccatactgtcttg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87871728 943 - 180051392 gattcgattgccaggcgtggtggctcacgcctgtaatcccagcac-ttgggagaccgaggcgggtggatcatgaggtcaggagatcacgaccatcctgactaacacagtgaaatcccgtctctactaaatatac-aaaaaaaaaaaaaaaaaatagcggggcatggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagctgagatcgcaccactgcactccagtctgggtgacagagcaagactcgatctc---aaaaaaaatt-----tttttt-------------ttttttatttgaacccacagataactgagaacatgtgatgtttgtctttctgtgtctggcttatttcacttaacataatgatctccttttccaagcatgttgttgcaaatgacaggatctcattctttttatggcggaatagtattccattttgtatatgtaccacatttcctttatccattcgcctgttgatggacacttatgttgcttccaaatcttagctattgtgaacagtgcagcaataaacatgggagtgcagatatatctttgatttactgctttcctttcttttgggtatatacccagcggt-gggattgctggatcatgtgctagctttatttttagttttttaagcaacctccaaactgtaatccat-gtggttgtactcatttgcatccccaccaacagtgtacgagggttccctttcctccacattcttgccagcatttattgttgcctgtcttttggatataagccattttatctTTCAttggcatctttattaaaagccactgggtgtattttgtgggtctatttctgggttctaggttctcttctgtggatctCTCTGGATGGATCTAGGAATAGATCTAGAGTCTGTTCCCTAAAACACTACCATAGTGTCTtg i rheMac8.chr6 I 52 I 545 s macFas5.chr6 87976133 942 - 181584905 gattcgattgccaggcgtggtggctcatgcctgtaatcccagcac-ttgggagaccgaggcgggtggatcatgaggtcaggagatcacgaccatcctgactaacacagtgaaatcccgtctctactaaatatac--aaaaaaaaaaaaaaaaatagctgggcatggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagctgagatcgcaccactgcactccagtctgggtgacagagcaagactcgatctc---aaaaaaaaaa-----tttttt-------------ttttaaatttgaacccacagataactgagaacatgtgatgtttgtctttctgtgtctggcttatttcacttaacataatgatctccttttccaagcatgttgttgcaaatgacaggatctcattctttttatggcggaatagtattccattttgtgtatgtaccacatttcctttatccattcacctgttgatggacacttatgttgcttccaaatcttagctattgtgaacagtgcagcaataaacatgggagtgcagatatatctttgatttactgctttcctttcttttgggtatatacccagcggt-gggattgctggatcatgtgctagctttatttttagttttttaagcaacctccaaactgtaatccat-gtggttgtactcatttgcatccccaccaacagtgtacgagggttccctttcctccacattcttgccagcatttattgttgcctgtcttttggatataagccattttatctTTCAttggcatctttattaaaagccactgggtgtattttgtgggtctatttctgggttctaggttctcttctgtggatctCTCTGGATGGATCTAGGAATAGATCTAGAGTCTGTTCCCTAAAACACTACCATAGTGTCTtg i macFas5.chr6 I 52 I 545 s macNem1.NW_012011400v1 1203535 944 - 8785636 gattcgattgccaggcgtggtggctcacgcctgtaatcccagcac-ttgggagaccgaggcgggtggatcatgaggtcaggagatcacgaccatcctgactaacacagtgaaatcccgtctctactaaatatacaaaaaaaaaaaaaaaaaaatagctgggcatggtggcaggcgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagctgagatcgcaccactgcactccagtctgggtgacagagcaagactcgatctc---aaaaaaaaaa-----tttttt-------------ttttaaatttgaacccacagataactgagaacatgtgatgtttgtctttctgtgtctggcttatttcacttaacataatgatctccttttccaagcatgttgttgcaaatgacaggatctcattctttttatggcggaatagtattccattttgtatatgtaccacatttcctttatccattcacctgttgatagacacttatgttgcttccaaatcttagctattgtgaacagtgcagcaataaacatgggagtgcagatatatctttgatttactgctttcctttcttttgggtatatacccagaggt-gggattgcaggatcatatgctagctttatttttagttttttaagcaacctccaaactgtaatccgt-gtggttgtactcatttgcatccccaccaacagtgtacgagggttccctttcctccacattcttgccagcatttattgttgcctgtcttttggatataagccattttatctTTCAttggcatctttattaaaagccactgggtgtattttgtgggtctatttctgggttctaggttctcttctgtggatctCTCTGGATGGATCTAGGAATAGATCTAGAGTCTGTTCCCTAAAACACTACCATAGTGTCTtg i macNem1.NW_012011400v1 I 52 I 536 s cerAty1.NW_012002401v1 1667214 942 + 27333823 gattcgattgccaggcgtggtggctcacacctgtaatcccagcac-ttgggagaccgatgcgggtggatcatgaggtcaggagatcacgaccatcctgactaacacagtgaaatcccgtctctactaaatatac--aaaaaaaaaaaaaaaaaaagctgggcatggtggcgggcgcctgtagtcccagctacttgggaggctgaggtaggagaatcgcttgaacccgggaggcggaggttgcagtgagctgagatcgcaccactgcactccagtctgggtgacagagcaagactcgatctc---aaaaaaaaaa-----tttttt-------------tttttaatttgaacccacagataactgagaacatgtggtatttgtctttctgtgtctggcttatttcacttaacataatgatctccttttccaagcatgttgttgcaaatgacaggatctcattctttttatggcggaatagtattccattttgtatatgtaccacatttcctttatccattcacccgttgatggacacttatgttgcttccaaatcttagctattgtgaacagtgcagcaataaacatgggagtgcagatatatctttgatttactgctttcctttcttttgggtatatacccagcggt-gggattgctggatcatgtgctagctttatttttagttttttaagcaacctccaaactgtaatccat-gtggttgtactcatttgcatccccaccaacagtgtacgagggttccctttcctccacattcttgccagcatttattgttgcctgtcttttggatataagccattttatctTTCAttggcatctttattaaaagccactgggtgtattttgtgggtctatttctgggttctaggttctcttctatggatctCTCTGGATGGATCTAGGAATAGATCTAGAGTCTGTTCCCTAAAACACTACCATAGTGTCTtg i cerAty1.NW_012002401v1 I 51 I 7614 s chlSab2.chr4 1936831 931 - 91010382 gatttgattgccaggcgtgatggctcacgcctgtaatcccagcactttgggagaccgaggcgggtggatgacgaggtcaggagatcacgaccatcctgactaacacggtgaaaccccatctctactaaatatacaaaaaaaaaaaaaaaaaaatagctgggcatagtggcaggcgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgaagtgagctgagatcgcaccactgcactccagtctgggtgacagagcaagactcgatctc---aaaaaaaaaaatttttttttt-------------tttttaatttgaacccacagataactgagaacatgtggtgtttgtctttctgtgtctggcttatttcacttaacataatgatctccttttccaagcatgttgttgcaaatgacaggatctcattctttttatggcggaatagtattccattttgtgtatgtaccacatttcctttatccattcacctgttgatggacacttacgttgcttccaaatcttagctattgtgaacagtgcagcaataaacgtgggagtgcagatatatttttgatttactgctttcctttcttttgggtatatacccagcagt-gggattgctggatcatatgctagctttatttttagttttttaagcaacctccaaactgtaatccat-gtggttgcactcatttgcatctgcaccaacagtgtacgagggttccctttcctccacattcttgccagcatttattgtt-------------------gccATTTTATCTTTCAttggcatctttattaaaagccactgggtgtattttgtgggtctatttctgggttctaggttctcttctgtggatctCTCTGGATGGATCTAGGAATAGATCTAGAGTCTGTTCCCTAAAACACTACCATAGTGTCTtg i chlSab2.chr4 I 67 I 539 s manLeu1.NW_012103732v1 2056294 940 + 5179401 gattcgattgccaggcatggtggctcacgcctgtaatcccagcac-ttgggagaccgaggcaggtggatcatgaggtcaggagatcacgaccatcctgactaacacagtgaaatcccatctctactaaatatac----aaaaaaaaaaaaaaatagctgggcatggtggcaggcgcctgtagtcccagctacttgggaggctgaggcaggagaattgcttgaacccgggaggcggaggttgcagtgagctgagctcgcaccactgcactccagtctgggtgacagagcaagactcgatctc---aaaaaaaaaa-----tttttt-------------tttttaatttgaacccacagataactgagaacatgtgatgtttgtctttctgtgtctggcttatttcacttaacataatgatctccttttccaagcatgttgttgcaaatgacaggatctcattctttttatggcggaatagtattccattttgtatatgtaccacatttcctttatccattcacccgttgatggacacttatgttgcttccaaatcttagctattgtgaacagtgcagcaataaacatgggagtgcagatatatctttgatttactgctttcctttcttttgggtatatacccagcggt-gggattgctggatcatgtgctagctttatttttagttttttaagcaacctccaaactgtaatccat-gtggttgcactcatttgcatccccaccaacagtgtacgagggttccctttcctccacattcttgccagcatttattgttgcctgtcttttggatataagccattttatctTTCATTAgcatctttattaaaagccactgggtgtattttgtgggtctatttctgggttctaggttctcttctgtggatctCTCTGGATGGATCTAGGGATAGATCTAGAGTCTGTTCCCTAAAACACTACCATAGTGTCTtg i manLeu1.NW_012103732v1 I 52 I 7621 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45022331 3967 + 71252344 I e calJac3.chr2 112568594 13003 + 204313951 I e colAng1.NW_012115488v1 7757257 2264 - 21726897 I a score=2347179.000000 s hg38.chr5_GL383530v1_alt 84326 2636 + 101241 atttttctagctaataatgtaagccttattaaaaggcagagtgatttctgtacctactttattcttctttatcaactttcttttagctattatagggctatgcatttccatataaattttctctatgtccacaaagctgggattttgataggaattatattaaactcatatgtcaacttggggagagttaaccacttcactatgttgagttttccaatccatgaacaaggtatatctctccatttatttctatctttcttttatttcatcagcattttgcaatttttagcataagatcccatgcacattttcttaatatatttttaagtatttcattttctttgaagtgattctaaatagtattatattttaaatttcagtttctgcatgttaattgttagtatatagaaatatgatggatttttgtggattgatcttctatcttgcaactttgcaaaacttgcttattaggtctgggagttttttttttct-----------------------tttttttcttttttttttggtagattccttgggattttctacatagacaattacgttatctgcaaatagagatgggtttacttcttctttcccagtctgaatatctttttttttctttctcttgccttatttcagtggctagaactgaacg------ttttatttttattttatttatgtatttattttgagacagagtatcgctccatcacccaggctggagtgcagtggcgcaatttcggctcactgcaacctctgcctcccaggGttttttgtttgtttgtttgttt-----------------gtttttgagatggagtctctctctattgcccaggcttgagtgcagtggcatgatcttgggtcactgcaacctctgcctcatgggttcaagcgattcttttgcctcagcctcctgagtagctgggattacaggtgcgtgccaccatgtccggct--------tatttttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccaactgcctcatcctcccaaagtgctgggattacaggcgtgaaccaccatgcctggccTcacttccc-aggttcaagggattctcctgcctcagcttcccgagtagctgggattacaggcatgcgctgccatgcctggctaattttctatttttagtagagacagggtttcaccatgttggtcaggctggtctccaactcctgaccttaggcaatccacccacttcgatctcccaaa-tactgggattacaggtatgagccactgcacctggcctgagagttctatttttaaaaaaccatgaatgatcctgtattttgttagctgccttttctgtgccaattgatatgatttctcatctctaacctgttgatatggtggatttcattgatcaattttccaaatattaaaccagcattaaatatagggaacaaatacaaacttggtcatggtatgttattggatttgaatttgctaatgttttgttgaggatttctgcatctaagttcatagaatatattttttgttttctttgtttgtactgtctttgttaggttttggtatcattacaatactagcctcataaagtaagttgagaaacattccctccacttccgttttctcagaatggttgtgtaaaattgtaactgcccagtgggttcaccttgcccactgcctagacagagctgctttcttaagacaggggaactgtaatggaaaaagagtaattcatgcagagccggctgtgcaagagaccggagttttatcattactcaaatcagtctccctgagcattcggggatcagaatttttaaagataatttggcagatagggccttgggaagtggggaatgctgattggtcaggttggagatggaatcatagggggttgaagttaggttttcttaatgtcttctgttcctgggtgagatggcagaactggttgaggcagattaccagtctgggtggtgtcagctgatccatcaagtgcagggtctgaaaaatgtctcaagtactgatcttaggttttacaatagtgatgttatccccaggagcaatttggggaggttcagacttttggagccagaagctgcatgacccctaaactgtaatttttaatcttgtagctaatttgttagtcctgtaaaggcagactggtccccaggcaagaagggggtcttttcaggaaagggctgttatcagttttgtttgatagttaaaccatgaactgaatccttcccaaagttagtttgccctacacccgggaatgaacaaggacagcttaaaggttagaagcaagatggagtcggttaggtctgatttctttcactgtcataatttgctcagttataattttgcaaaggtggtttcaaaattagtgtcaattttttaaatgtttggtaaaattctccagtgaaattatctggacctgaatatttttctttggagaactttttgattatggattcagtttctttattgttatTTGGAtgtgtaatcctttttgtggacacgtatttccttttgggcaaatatctagaagttggagattctatacctttgggtcagtagatgttaaacttcatttaaaaagtgccaaactcctttttttattattattattatactttaagatctggga s panTro5.chr5 20318292 2681 + 181907262 atttttctagctaataatgtaagccttattaaaaggcagagtgatttctgtacctactttattcttctttatcaactttcttttagctattacagggctatgcatttccatataaattttctctatgtccacaaagctgggattttgataggaattatattaaactcatatgtcaatttggggagagttaaccacttcactatgttgagttttccaatccatgaacaaggtatatctctccatttatttctatctttcttttatttcatcagcattttgcaatttttagcataagatcccatgcacattttgttaatatatttttaagtatttcattttctttgaagtgattctaaatagtattatattttaaatttcagtttctgcatgttaattgttagtatatagaaatatgatggatttttgtggattgatcttctatcttgcagctttgcaaaacttgcctattagttctgggagttttttttttttcttttttttttttttttttttttttttttttttttttttttggtagattccttgggattttctacatagacaattatgttatctgcaaatagagatgggtttacttcttctttcccagtctgaatatctttttttt-ctttctcttgccttatttcagtggctagaactgaaca------ttttatttttattttatttatgtatttattttgagacagagtatcgctccatcacccaggctggagtgcagtggcgcaatttcggctcactgcaacctctgcctcccagggttttttgtttggttgtttgttttg-ttttgttttgttttgtttttgagatggagcctctctctattgcccaggcttgagtgcaatggcatggtcttgggtcactgcaacctctgcctcatgggttcaagcgattctcttgcctcagcctcctgagtagctgggattacaggtgcgtgccaccatatccggctaatttttgtgtttttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccaactgcctcagcctcccaaagtgctgggattacaggcgtgaaccaccacgcccggccTcacttccc-aggttcaagggattctcctgcctcagcttcccgagtagctgggattacaggcatgtgctgccacgcctggctaattttctatttttagtagagacagggtttcaccgtgttggtcaggccggtctcaaactcctgaccttaggcaatccacccacttccatctcccaaa-tactgggattacaggtatgagccactgcacctggcctgagagttctatttttaaaaaaccatgaatgatcctgtattttgttagctgccttttctgtgccaattgatatgatttctcatctctaacctgttgatatggtggatttcattgatcaattttccaaatattaaaccagcattaaatatagggaacaaatacaaacttggtcatggcatgttattggatttgaatttgctaatgttttgttgaggatttcttcatctaagttcatagaatatattttttgttttctttgtttgtactgtctttgttaggttttggtatcattacaatactagcctcataaagtaagttgggaaacattccctccacttccgttttctcagaatggttgtgtaaaattgtaactgcccagtgggttcaccttgcccactgcctagacagagctgctttcttaagacaggggaactgtaatggaaaaagagtaattcatgcagagccggctgtgcaagagaccagagttttatcattactcaaatcagtctccctgagcatttggggatcagaatttttaaagataatttggcagatagggccttgggaattggtgaatgctgattggtcaggttggagatggaatcatagggggttgaagttaggttttcttaatgtcttctgttcctgggtgagatggcagaactggttgaggcagattaccagtctgggtggtgtcagctgatccatcaagtgcagggtctgaaaaatgtctcaagtactgatcttaggttttacaatagtgatgttatccccaggagcaatttggggaggttcagacttttggagccagaagctgcatgacccctaaactgtaatttttaatcttgtagctaatttgttagtcctgtaaaggcagactggtccccaggcaagaagggggtcttttcaggaaagggctgttatcagttttgtttgatagttaaaccgtgaactgaatccttcccaaagttagtttgccctacacccgggaatgaacaaggacagcttaaaggttagaagcaagatggagtcggttaggtctgatttctttcactgtcataatttgctcagttataattttgcaaaggtggtttcaaaattagtgtcaattttttaaatgtttggtaaaattctccagtgaaattatctggacctgaatatttttctttggagaactttttgattatggattcagtttctttattgttatTTGAAtgtgtaatcctttttgtggacacgtatttccttttgggcaaatatctagaagttggagattctgtacctttgggtcagtagatgttaaacttcatttaaaaagtgccaaactccttttttt-ttattattattatactttaagatctggga i panTro5.chr5 C 0 C 0 s panPan2.chr5 20330536 2642 + 183735486 atttttctagctaataatgtaagccttattaaaaggcagagtgatttctgtacctactttattcttctttatcaactttcttttagctactatagggctatgcatttccatataaattttctctatgtccacaaagctgggattttgataggaattatattaaactcatatgtcaatttggggagagttaaccacttcactatgttgagttttccaatccatgaacaaggtatatctctccatttatttctatctttcttttatttcatcagcattttgcaatttttagcataagatcccatgcacattttcttaatatatttttaagtatttcattttctttgaagtgattctaaatagtattatattttaaatttcagtttctgcatgttaattgttagtatatagaaatatgatggatttttgtggattgatcttctatcttgcaactttgcaaaacttgcttattagctctgggaggtttttttcttt-------------------------------------ttttggtagattccttgggattttctacatagacaattatgttatctgcaaatagagatgggtttacttcttctttcccagtctgaatatctttttttt-ctttctcttgccttatttcagtggctagaactgaacg------ttttatttttattttatttatgtatttattttgagacagagtatcgctccatcacccaggctggagtgcagtggcgcaatttcggctcactgcaacctctgcctcccagggttttttgtttgtttgtttgttttgtttttgttttgtt--ttttttgagatggagtctctctctattgcccaggcttgagtgcaatggcatgatcttgggtcactgcaacctctgcctcatgggttcaagcgattcttttgcctcagcctcctgagtagctgggattacaggtgcgtgccaccatgtccagctaatttttgtgtttttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccaactgcctcatcctcccaaagtgctgggattacaggcgtgaaccaccatgcccggccTcacttccc-aggttcaagggattctcctgcctcagcttcccgagtagctgggattaccgccatgcgctgccacgcctggctaattttctgtttttagtagagacagggtttcaccatgttggtcaggctggtctccaactcctgaccttaggcaatccacccacttcgatctcccaaa-tactgggattacaggtatgagccaatgcacctggcctgagagttctatttttaaaaaaacatgaatgttcctgtattttgttagctgccttttctgtgccaattgatatgatttctcatctctaacctgttgatatggtggatttcattgatcaattttccaaatattaaaccagcattaaatatagggaacaaatacaaacttggtcatggtatgttattggatttgaatttgctaatgttttgttgaggatttctgcatctaagttcatagaatatattttttgttttctttgtttgtactgtctttgttaggttttggtatcattacaatactagcctcataaagtaagttgagaaacattccctccacttccgttttctcagaatggttgtgtaaaattgtaactgcccagtgggttcaccttgcccactgcctagacagagctgctttcttaagacaggggaactgtaatggaaaaagagtaattcatgcagagccagctgtgcaagagaccggagttttatcattactcaaatcagtctccctgagcattcggggatcagaatttttaaagataatttggcagatagggccttgggaattggggaatgctgattggtcaggttggagatggaatcataggggattgaagttaggttttcttaatgtcttctgttcctgggtgagatcgcagaactggttgaggcagattaccagtctgggtggtgtcagctgatccatcaagtgcagggtctgaaaaatgtctcaagtactgatcttaggttttacaatagtgatgttatccccaggagcaatttggggaggttcagacttttggagccagaagctgcatgacccctaaactgtaatttttaatcttgtagctaatttgttagtcctgtaaaggcagactggtccccaggcaagaagggggtcttttcaggaaagggctgttatcagttttgtttgatagtgaaaccgtgaactgaatccttcccaaagttagtttgccctacacccgggaatgaacaaggacagcttaaaggttagaagcaagatggagtcggttaggtctgatttctttcactgtcataatttgctcagttataattttgcaaaggtggtttcaaaattagtgtcaattttttaaatgtttggtaaaattctccagtgaaattatctggacctgaatatttttctttggagaacttttcgattatggattcagtttctttattgttatTTGAAtgtgtaatcctttttgtggacacgtatttccttttgggcaaatatctagaagttggagattctgtacctttgggtcagtagatgttaaacttcatttaaaaagtgccaaactcctttttt--ttattattattatactttaagatctggga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4817188 2647 - 13748885 atttttctagctaataatgtaagccttattaaaaggcagagtgatttctgtacctactttattcttctttatcaactttcttttagctattatagggctatgcatttccatataaattttctctatgtccacaaagctgggattttgataggaattatattaaactcatatgtcaatttggggagagttaaccacttcactatgttgagttttccaatccatgaacaaggtatatctctccatttatttctgtctttcttttatttcatcagcattttgcaatttttagcataagatcccatgcacattttgttaatatatttttaagtatttcattttctttgaagtgattctaaatagtattatattttaaattt--gtttctgcatgttaattgttagtatatagaaatatgatggatttttgtggattgatcttctatcttgcaactttgcaaaacttgcttattagttctgggagtttttttttttt-----------------------ctttttttttttttttttggtagattccttgggattttctacatagacaattatgttatctgcaaatagagatgggtttacttcttctttcccagtctgaatatctttttttttctttctcttgccttatttcagtggctagaactgaac-------ttttatttttattttatttatgtatttattttgagacagagtatcgctccatcacccaggctggagtgcggtggcgcaatttcggctcactgcaacctctgcctcccagggttttttgtttgtttgtttgttttg-ttttgttttttt--ttttttgagatggagtctctctctattgcc--agcttaagtgcaatggcatgatcttgggtcactgcaacctctgcctcatgggttcaagcgattctcttgcctcagcctcctgagtagctgggattacaggtgcgtgccaccatgt-cggctaatttttgtgtttttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccaactgcctcatcctcccaaagtgctgggattacaggcgtgaaccacca-gcccggccTcacttccc-aggttcaagggattctcctgcctcagcttcccgagtagctgggattacaggcatgcggtgccacgcctggctaattttctatttttagtagagacagggtttcaccatgttggtcaggctggtctcaaactcctgaccttaggcaatccacccacttcgatctcccaaa-tactgggattacaggtatgagccactgcacctggcctgagagttctatttttaaaaaaccatgaatgatcctgtattttgttagctgcc-tttctgtgccaattgatatgatttctcatctctaacctgttgatatggtggatttcattgatcaattttccaaatattaaaccagcattaaatatagggaacaaatacaaacttggtcatggtatgtta-tggatttgaatttgctaatgttttgttgaggatttctgcatctaagttcatagaatatattttttgttttctttgtttgtactgtctttgttaggttttggtatcattacaatactagcctcataaagtaagttgggaaacattccctccacttccgttttctcagaatggttgtgtaaaattgtaactgcccagtgggttcaccttgcccactgcctagacagagctgctttcttaagacaggggaactgtaacggagaaagagtaattcatgcagagctggctgtgcaagagaccggagttttatcattactcaaatcagtctccctgagcattcggggatcagaatttttaaagataatttggcagatagggccttgggaagtgaggaatgctgattggtcaggttggagttggaatcatagggggttgaagttaggttttcttaatgtcttctgttcctgggtgagatggcagaactggttgaggcagattaccagtctgggtggtgtcagctgatccatcaagtgcagggtctgaaaaatgtctcaagtactgatcttaggttttacaatagtgatgttatccccaggagcaatttggggaggttcagacttttggagccagaagctgcatgacccctaaactgtaatttttaatcctgtagctaatttgttagtcctgtaaaggcagactggtccccaggcaagaagcgggtcttttcaggaaagggctgttatcagttttgtttgatagttaaaccgtgaactgaatccttcccaaagttagtttgccctacacccgggaatgaacaaggacagcttaaaggttagaagcaagatggagtcggttaggtctgatttctttcactgtcataattcgctcagttataattttgcaaaggtggtttcaaaattagtgtcaattttttaaatgtttggtaaaattctctagtgaaattatctggacctgaatatttttctttggagaactttttgactatggattcagtttctttattgttatTTGAAtgtgtaatcctttttgtggacacgtatttccttttgggcaaatatctagaagttggagattctgtacctttgggtcagtagatgttaaacttcatttaaaaagtgccaaactcctttttt--taattattattatactttaagatctggga i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53849733 2641 - 163208435 atttttctagctaataatgtaagccttattaaaaggcagagtgatttctgtacctactttattcttctttatcaactttcttttagctattatagggctatgcatttccatataaattttctctatgtccacaaagctgggattttgataggaattatgttaaactcatatgtcaatttggggagagttaaccacttcactatgttgagttttccaatccatgaacaaggtatatctctccatttatttctatctttcttttatttcatcagcattttgcaatttctagcataagatcccatgcacattttgttaatatatttttaagtatttcattttctttgaagcgattctaaatagtattatattttaaatttcagtttccgcatgttaattgttagtatatagaaatatgatggatttttgtgggttgatcttctatcttgcaactttgcaagactcacttattagttctgggagttttttattttt---------------------------------------ttggtagattccttgggattttctacatagataattatgttatctgcaaatagagatgggtttacttcttctttcccagtctgaatatcttttttt--ctttctcttgccttatttcagtggctagaactgaacattttatttttatttttattttatttatgtatttattttgagacagagtatcgctctgtcacccaggctggagtgcagtggtgcaatttcggctcactgcaacctctgcctcccagggttTTTTGT----TTGtttgttttgtttttgtttttgtttttttttgagatggag----tctctattgcccaggcttgagtgcaatggcatgatcttgggtcactgcaacctctgtctcatgagttcaagcgattctcttgcctcagcctcctgagtagctgggattacaggtacgtgccaccacatctggctaatttttgtgtttttttagtagagacaggatttcgccaggttggccaggctggtctcaaactcctgaccttgtggtccacctgtctcagcctcccaaagtgctgggattacaggcgtgaaccaccacgcccggccTTActtcccaaggttcaagggattctcctgcctcagcctcctgagtagctgggattacaggcatgcgctgccacgcctggctaattttctatttttagtagagacggggtttcaccatgttggtcaggctggtctcaaactctttaccttaggcgatccacccacttcagtctcccaaagtgctgggattacaggtatgagccactgcacctggcctgagagttctatttttaaaaaaccatgaatgatcctgtattttgttagctgccttttctgtgccaattgatatgatttctcatctctaacctgttgatatggtggatttcattgatcaattttccaaatattgaaccagcattacatatatggaacaaatacaaagttggtcatggtatgttattggatttgaatttgctaatattttgttgaggatttctgcatctaagttcatagaatatattttttgttttctttgtttgtactgtctttgttaggttttgttatcattacaatactagcctcataaagtaagttgggaaacattccctccacttcggttttctcagaatagttgtgtaaaattgtaactgcccggtgggttcaccttgcccactgcctagacagagctgctttcttaagacaggggaactgtaatggaaaaagagtaattcatgcagagccggctgtgcaagagaccagaattttatcattactcaaatcagcctccctgagcatttggggatcagaatttttaaagataatttggcagatagggccttgggaagtggggaatgccgactggtcaggttggagatggaatcacagggggtcgaagttaggttttcttaatgtgttctgttcctgggtgagatggcagaactggttgaggcagattactagtctgggtggtgtcagctgatccatcgagtgcacggtctgaaaaatgtctcaggtactgatcttaggttttacaatagtgatattatccccaggagcaatttggggaggttcagacttttggagcgagaagctgcatgacccctaaactgtaatttttaatcttgtagctaatttgttagtgctgcaaaggcagactggtccccaggcaagaagggggtcttttcaggaaagggctgttatcagttttgtttgatagttaaaccatgaactgaatccttcccaaagttagtttggcctacacccgggaatgaacaaggacagcttaaaggttagaagcaagatggagtcggttaggtctgatttctttcactgtcataatttcctcagttataattttgcaaaggtggtttcaaaattagtgtcaatttgttaaatgtttggtaaaattctccagtgacactatctggacctgaatatttttctttggagaactttttgattatgaattcaatttctttattgttatTTGAAtgtgtaatcctttttgtggagatgtatttccttttgggcaaatatctagaagttggagattctgtacctttgggtcagtagatgttaaacttcatttaaaaagtgccaaactcctttttt--tttttattattatactttaagatctggga i nomLeu3.chr2 C 0 C 0 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45022331 3967 + 71252344 I e calJac3.chr2 112568594 13003 + 204313951 I e colAng1.NW_012115488v1 7757257 2264 - 21726897 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e chlSab2.chr4 1937762 539 - 91010382 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e macNem1.NW_012011400v1 1204479 536 - 8785636 I e macFas5.chr6 87977075 545 - 181584905 I e rheMac8.chr6 87872671 545 - 180051392 I a score=5095482.000000 s hg38.chr5_GL383530v1_alt 86962 1353 + 101241 tacatgtgcagaacgtacaggtttgttacataggtatacatgtgccatggtggtttgctgcacccaccaacccatcatccacattaagtatttcttctaatgctatccctcccctagcccctcaccccccaacaggccccggtgtgtgatgttcccctccctgcgtccatgtgttctcattgttcaactcccaattatgagtgagaacatgcggtgtttgccaaactctttttcaaaatgttcacgccatattatactccaaagaacactgt-agcaagtttcagttgctcttcacccttctttggtattgtcagtctgattaatttcagccattccaatagatctgaagtagtatctaattgtgatttttatttttatttccttcattaatgaaggtggacatccttttatgtacttatttaccattctcatac-tttttttggcgaatgtcggctcaatctttgcccaattattttgcttgtttgcatgtttatttttagtcagtagtttgtctttttcttgagttgcaagatctcattatatattttggatatacaatatgtcagatatatgtatttcaaattcatgctccaaatttctggctttcctttgcattttcttgatatcctttgaaaagtaaaagttttaattttgatcaattgcagtgtattgtttttccttctatgtttgtgctttcatgttctcattaataaatttttaattctaataaatataaattatatttattttaaattaataaatgaacctactccatggctgtaaaatttttctcctatgtttcattctagaagttttaaggcttatgcttagatttatgttttaggctatgattcattc-------------------------------tttgtatggtgtgaggttgaggtttattatttttcataaagatgcccagttgattcagcataattttttgagaccactatccatttctctttgaattgccttggcacatttgacaaatatcaattaaccacttatgtatggatctatttctggactctattctgttccactgatatattcatctgtccttatactggcgctgtcctgatttgattattgtagctttataatat---tcttttttttttttttttt-----------gagacggagtcttgctctatcacccaggctggagtgcaatggtgcgatctcagcccactgcaacctctgtcttccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcacccgccaccatgtccggctaattt---------------------------ttatttt-------gtatt-tttagtagagac-ggattttaccatgttagccaggatggtcttgatctcctgaccttgtgatccacccgcctcggcctcc s panTro5.chr5 20320973 1360 + 181907262 tacatgtgcagaatgtacaggtttgttacataggtatacatgtgccatggtggtttgctgcacccaccaacccatcatccacattaggtatttcttctaatgctatccctcccctagcccctcaccccccaacaggccccggtgtgtgatgttcccctccctgcgtccatgggttcgcattgttcaactcccaattatgagtgagaacatgcggtgtttgccaaactctttttcaaagtgttcatgccacattatattccaaagaacactgt-agcaagtttcagttgctcttcacccttctttggtattgtcagtctgattaatttcagccattccaatagatctgaagtagtatctaattgtgatttttatttttatttccttcattaatgaaggtggacatccttttatgtacttatttaccaatctcatac-tttttttggcgaatatcggctcagtctttgcccaattatttttcttgtttgcatgttaatttttaatcagtagtttgtctttttcttgagttgtaagatctcattatatattttggatatacaatatgtcagatatatgtatttcaaattcatgctccaaatttctggctttcctttgcatttttttgatatcctttgaaaagtaaaagttttaattttgatcaattgcagtgtattatttttccttctatgtttgtgctttcatgttctcattaat----ttttaattctaataaatatatattatatttattttaaattaataaatgaacctactccatggctgtaaaatttttctcctatgtttcattctagaagttttaaggtttatgcttagatttatgttttaggctatgattcattc-------------------------------tttgtatggtgtgaggttgaggtttattatttttcataaagatgcccggttgattcagcataattttttgagactactatccatttctctttgaattaccttggcacatttgacaaatatcaattaaccacttatgtatggatctatttctggactctattctgttccactgatatattcatctatccttatactggcactatcctgatttgattattgtagctttataataT---TCttttttttttttttttttttttttttttgagatggagtctcgctctgtcacccaggctggagtgcaatggtgcgatctcagcccactgcaacctctgtcttccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcacccgccaccatgtccggctaattt---------------------------ttatttt-------gtatt-tttagtagagac-ggattttaccatgttagccaggatggtcttgatctcctgaccttgtgatccacccgcctcggcctcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20333178 1346 + 183735486 tacatgtgcagaacgtacaggtttgttacataggtatacatgtgccatggtggtttgctgcacccaccaacccatcatccacattaggtatttcttctaatgctatccctcccctagcccctcaccccccaacaggccccggtgtgtgatgttcccctccctgcgtccatgtgttctcattgttcaactcccaattatgagtgagaacatgcggtgtttgccaaactctttttcaaagtgttcatgccatattatattccaaagaacactgt-agcaagtttcagttgctcttcacccttctttggtattgtcagtctgattaatttcagccattccaatagatctgaagtagtatctaattgtgatttttatttttatttccttcattaatgaaggtggacatccttttatgtactcatttaccattctcatac-tttttttggcgaatatcggctcaatctttgcccaattattttgcttgtttgcatgtttatttttagtcagtagtttgtctttttcttgagttgtaagatctcattatatattttggatatacaatatgtcagatatatgtatttcaaattcatgctccaaatttctggctttcctttgcatttttttgatatcctttgaaaagtaaaagttttaattttgatcaattgcagtgtattatttttccttctatgtttgtgctttcatgttctcattaat----ttttaattctaataaatatatattatatttattttaaattaataaatgaacctactccatggctgtaaaatttttctcctatgtttcattctagaagttttaaggtttatgcttagatttatgttttaggctatgattcattc-------------------------------tttgtatggtgtgaggttgaggtttattatttttcataaagatgcccagttgattcagcataattttttgagactactatccatttctctttgaattaccttggcacatttgacaaatatcaattaaccacttatgtatggatctatttctggactctattctgttccactgatatattcatctatccttatactggcgctatcctgatttgattattgtagctttataatac---ttcttttttttttttt--------------gagatggagtctcgctctatcacccaggctggagtgcaatggtgcgatctcagcccactgcaacctctgtcttccaggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcacccgccaccatgtccggctaattt---------------------------ttatttt-------gtatt-tttagtagagac-ggattttaccatgttagccaggatggtcttgatctcctgaccttgtgatccacccgcctcggcctcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4819835 1349 - 13748885 tacatgtgcagaacatacaggtttgttacataggtatacatatgccatggtggtttgctgcacccaccaacccatcatccacattaggtatttcttctaatgctatccctcccctagcccctcaccccccaacaggcccc-gtgtgtgatgttcccctccctgcgtccatgtgttctcattgttcaactcccagttatgagtgagaacatgcggtgtttgccaaactctttttcaaagtgttcatgccatactatattccaaagaacactgt-agcaagtttcagttgctcttcacccttctttggtattgtcagtctgattaatttcagccattccaatagatctgaagtagtatctaattgtgatttttatttttatttccttcattaatgaaggtggacatccttttatgtacttatttaccattctcatac-tttttttggcgaatgtcggctcaatctttgcccaattattttgcttgtttgcatgtttatttttaatcagtagtttgtctttttcttgagttgtaagatctcattatatattttgg-tatatgatatgtcagatatatgtatttcaaattcatgctccaaatttctggctttcctttgcattttcttgatatcctttgaaaagtaaaagttttaattttgatcaattgcagtgtattgtttttccttctatgtttgtgctttcatgttctcattaataaatttttaattctaataaatataaattatatttattttaaattaataaatgaacctactccatggctgtaaaatttttctcctatgtttcattctagaagttttaaggtttatgcttagatttatgttttaggctatgattcattc-------------------------------tttgtatggtgtgaggttgaggtttattatttttcataaagatgcccagttgattcagcataattttttgag-ccactatccatttctctttgaattaccttggcacatttgacaaatatcaattaaccacttatgtatggatctatttctggactctattctgttccactgatatattcatctatccttatactggcgctatcctgatttgattattgtagctttataatat---tctttttttttttttttttt----------gagacggagtctcgctctatcacccaggctggagtgcaatggtgcaatctcagcccactgcaacctctgtcttccaggttcaggcgattctcctgcctcagcctcctgagtagctgggattacaggcacccgccaccatgtctggctaattt---------------------------ttatttt-------gtatt-tttagtagagac-ggattttaccatgttagcctggatggtcttgatc-cctgaccttgtgatccaccc-cctcggcctcc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53852374 1350 - 163208435 tacatgtgcagaatgtacaggtttgttacataggtatacatgtgccatggtggtttgctgcacccaccaacccatcatccacattaggtatttcttctaatgctatccctcccctagcccctcacgccccaacaggcccctgtgtgtgatgtttccctccctgcgtccatgtgttctcattgttcaactccgaattatgagtgagaacatgcagtgtttgccaaactctttttcaaagtgttcataccatattatactccaaagaacactgt-agcaagtttcagttgctcctcacccttctttggtattgtcagtctgattaattttagccattccaataggtctgaagtagtatctaattatgatttttatttttatttccttcattaatgaaggtggacatccttttatgtacttatttaccattctcatac-cttttttggtgaatatcggctcaatctttgcccaattattttgcttgtttgcatgtttatttttaatcagtagtttgtctttttcttgagttgtaagatctcattatatattttggatacacgatatgtcagatatatgtacttcaaattcatgctccaaatttctggctttcctttgcattttcttgatatcctttgaaaagtaaaagttttaattttgatcaattgcagtgtattgtttttccttctatgtttgcgctttcatattctcattaataaatttttaattctaataaatataaattatatttattttaaattaataaatgaacctactccatggttgtaaaatttttctcctatgtttcattctagaagttttaaggtttatgcttagatttatgttttaggctatgattcattc-------------------------------tttgtatggtgtgagactgaggtttattatttttcataaagatgcccagttgattcagcataattttttgagaccactgtccatttctctttgaattaccttggcatatttgacaaatatcaattaaccacatatgtatggatctatttctggactctattctgttccactgatatattcgtctatccttatactggtgctgtcctgatttgattattgtagctttataatat---tcttttttttttttttttttt---------gagacggagtctcgctctgtcacctaggctggagtgcaatggtg-----------cactgcaacctctgccttccagattcaagtgattct-ctgcctcagcctcctgagtagctgggattacaggcatccgccaccatgtccagctaattt---------------------------tttttttgttgttcgtatt-tttagtagagac-tggttttgccatgttagccaggatggtcttgatctcctgaccttgtgatccacctgcctcagcctcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87873216 1387 - 180051392 tacatgtgcagtacgtgcaggtttgttacataggtatacacgtgccatggtggtttgctgcacccaccaatccatcatccacattaggtatttcttctaatgctatccctcccctaa-cccccactccctaacaggccttggtgtgtgatgttcccatccctgagtccatgtgttctcattgttcaactcccaattatgagtgagaacatgtggtgtttgccaagctctttttcaaagtggttgtaccatattatactccaaagaacactgtaagcaagtttcagttgctcctcacccttctttggtttt----gtctgattaattctagctattccaataggtctgaaatagtatctaattgtgatttttatttttatttccttcattaatgaaggtggacatccttttatgtacttatttacaattctcatacttttttttggtgaatatctgttcagtctttgcccaattattttgcttgtttgcatgtttatttttaatcagtagtttgtcttttccttgagttgtaagatctcattatatattttggatacacgatttgtcagatatatgtatttcaaatgtatgctccaaatttctggctttcctttgcattttcttgatatcctttgaaaagtaaaagttttaattttgatcaattgctgtgtgttgtttttccttctatgtttgtgctttcatgctctcattaataaatttttaattataatacatataaattatatttattttaaattaataaatgaacctattccatggttgtaaaatttttctcctatgttttattctagaagttttaaggtttatgcttagatttatgttttaggctatgattcattctttgtatggtgcgaggttgagaaataaattatttgtatggtgtgaggttgaggtttattattttccataaagatgcccagttgattcagcataattttttgagaccactgtccatttctctttgaattaccttggcccatttgacaaatatcaattaaccacatatgtatggatctatttctggactctattctggtccactgatacattcatctatccttttactggtgctaccctgatttgattattgtagctttataataa---TAATATTATTATTAtttt------------gagatggaatcttgctctgtcacccaggctggagtgcaatggtgcaatctcagcccactgcaacctctgtctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcacccgccaccatgcctggctaattt---------------------tgtgtgtgtatgt-------gtgtg-tttagtagagatggggttttaccatgttagccaggatggtcttgatctcctgactttgtgatccacccaccttggccttg i rheMac8.chr6 I 545 C 0 s macFas5.chr6 87977620 1386 - 181584905 tacatgtgcagtacgtgcaggtttgttacataggtatacacgtgctatggtggtttgctgcacccaccaatccatcatccacattaggtatttcttctaatgctatccctcccctaa-cccccactccctaacaggccttggtgtgtgatgttcccatccctgagtccatgtgttctcattgttcaactcccaattatgagtgagaacatgtggtgtttgccaagctctttttcaaagtggttgtaccatattatactccaaagaacactgtaagcaagtttcagttgttcctcacccttctttggtttt----gtctgattaattctagctattccaataggtctgaaatagtatctaattgtgatttttatttttatttccttcattaatgaaggtggacatccttttatgtacttatttacaattctcatac-tttttttggtgaatatctgttcagtctttgcccaattattttgcttgtttgcatgtttatttttaatcagtagtttgtcttttccttgagttgtaagatctcattatatattttggatacacgatttgtcagatatatgtatttcaaatgtatgctccaaatttctggctttcctttgcattttcttgatatcctttgaaaagtaaaagttttaattttgatcaattgctgtgtgttgtttttccttctatgtttgtgctttCATGCTCTCATTAAtaaatttttaattataatacatataaattatatttattttaaattaataAATGAAcctattccatggttgtaaaatttttctcctatgttttattctagaagttttaaggtttatgcttagatttatgttttaggctatgattcattctttgtatggtgcgaggttgagaaataaattatttgtatggtgtgaggttgaggtttattattttccataaagatgcccagttgattcagcataattttttgagaccactgtccatttctctttgaattaccttggcccatttgacaaatatcaattaaccacatatgtatggatctatttctggactctattctggtccactgatacattaatctatccttttactggtgctaccctgatttgattattgtagctttataataa---TAATATTATTATTAtttt------------gagatggaatcttgctctgtcacccaggctggagtgcaatggtgcaatctcagcccactgcaacctctgtctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcacccgccaccatgcctggctaattt---------------------tgtgtgtgtatgt-------gtgtg-tttagtagagatggggttttaccatgttagccaggatggtcttgatctcctgactttgtgatccacccaccttggccttg i macFas5.chr6 I 545 C 0 s macNem1.NW_012011400v1 1205015 1386 - 8785636 tacatgtgcagtacgtgcaggtttgttacataggtatacacgtgccatggtggtttgctgcacccaccaatccatcatccacattaggtatttcttctaatgctattcctcccctaa-cccccactccctaacaggccttggtgtgtgatgttcccatccctgagtccatgtgttctcattgttcaactcccaattatgagtgagaacatgtggtgtttgccaagctctttttcaaagtggttgtaccatattatactccaaagaacactgtaagcaagtttcagttgctcctcacccttctttggtttt----gtctgattaattctagctattccaataggtctgaaatagtatctaattgtgatttttattttcatttccttcattaatgaaggtggacatccttttatgtacttatttacaattctcatac-tttttttggtgaatatctgttcagtctttgcccaattattttgcttgtttgcatgtttatttttaatcagtagtttgtcttttccttgagttgtaagatctcgttatatattttggatacacgatttgtcagatatatgtatttcaaatgtatgctccaaatttctggctttcctttgcattttcttgatatcctttgaaaagtaaaagttttaattttgatcaattgctgtgtgttgtttttccttctatgtttgtgctttcatgctctcattaataaatttttaattataatacatataaattatatttattttaaattaataaatgaacctattccatggttgtaaaatttttctcctatgttttattctagaagttttaaggtttatgcttagatttatgttttaggctatgattcattctttgtatggtgcgaggttgagaaataaattatttgtatggtgtgaggttgaggtttattattttccataaagatgcccagttgattcagcataattttttgagaccactgtccatttctctttgaattaccttggcccatttgacaaatatcaattaaccacatatgtatggatctatttctggactctattctggtccactgatacattcatctatccttttactggtgctaccctgatttgattattgtagctttataataa---TAATATTATTATTAtttt------------gagatggaatcttgctctgtcacccaggctggagtgcaatggtgcaatctcagcccactgcaacctctgtctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcacccgccaccatgcctggctaattt---------------------tgtgtgtgtatgt-------gtgtg-tttagtagagatggggttttaccatgttagccaggatggtcttgatctcctgactttgtgatccacccacctcggccttg i macNem1.NW_012011400v1 I 536 C 0 s chlSab2.chr4 1938301 1409 - 91010382 tacatgtgcagaacatgcaggtttgttacataggtatacacctgccatggtggtttgctgcacccaccaatccatcatccacattaggtatttcttctaatgctatccctcccttaaccccccaccccctaacaggccttggtgtgtgatgttcccatccctgagtccatgtgttctcattgttcaactcccaattataagtgagaacatgtggtgtttgccaagctctttttcaaagtggttgtaccatattatactccaaagaacactgtaagcaagtttcagttgctcctcacccttctttggtttt----gtctgattaattctagctattccaataggtctgaaatagtatctaattgtgatttttatttttatttccttcattaatgaaggtggacatccttttatgtacttatttacaattctcatac-tttttttggtgaatatctgttcagtctttgcccaattattttgcttgtttgcatgtttatttttaatcagtagtgtgtcttttccttgagttgtgagatctcattatatattttggatacacgatttgtcagatatatgtatttcaaatgtatgctccaaatttctggctttcctttgcattttcttgatatccttggaaaagtaaaagttttaattttgatcaattgcagtgtgttgtttttccttctgtgtttgtgctttCATGTTCTCATTAAtaaatttttaattctaatacatataaattatatttattttaaattaataAATGAAcctattccatggttgtaaaatttttctcctatgttttattctagaagttttaaggtttatgcttagatttatgttttaggctatgattcattctttgtatggtgtgaggttgagaaataaattctttgtatggtgtgaggttgaggtttattatttttcataaagatgcccagttgattcagcataattttttgagaccactgtccatttctctttgaattaccttggcccatttgacaaatatcaattaaccacatatgtatggatctctttctggactctattctgttccactgatatattcatctatccttttactggtgctaccctaatttgattattgtagctatattatat---tattattattattatttt------------gagatggagtctcactctgtcacccaggctggagtgcaatggtgcaatctcagcccactgcaacctctgcctcccaggttcaagccattctactgcctcagcctcccaagtagctgggattacaggcatccgccactatgcctggctaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-------gtgtgttttagtagagacggggttttaccgtgttagccaggatggtcttgatctcctggctctgtgatccacccacctcggccttg i chlSab2.chr4 I 539 C 0 s colAng1.NW_012115488v1 7759521 1404 - 21726897 tacatgtgcagaacgtgcagatttgttacataggtatacacgtgctatggtggtttgctgcacccagcagcccatcacccacattagatatttcttctaatgctatccctcccctaaccccccaccccctaacaggcctcggtgtgtgatgttcccctccctgagtccacgtgttctcattgtttaactcccaattatgagtgagaacatgtggtgtttgccaaactctttttcgaagtggttgtaccatattatactccaaagaacactgtaagcaagtttcagttgctcctcacccttctttggtattgtcagtctgattaattttagctcttccaataggtctgaaatagtatctaattgtgatttttatttttatttccttcattaatgaaggtggacatccttttatgtacttatttacaattctcatac-tttttttggtgaatatctgttcagtctttgcccaattattttgcttgtttgcatgtttatttttaatcagtagtttgtcttttccttgagttgtaagatctcattatatattttagatacacgatttgtcagatatatgtatttcaaatgtatgctccaaatttctgactttcctttgcattttcttgatatcctttgaaaagtaaaagttttaattttgatcaattgcagtgtgttgcttttccttctatgtttgtgctttcatgttctcattaataaatttttaattttaatacatataaattatatttattttaaattaataaatgaacctactccatggctgtaaaatttttctcctatgttttattctagaaggtttaaggtttatgcttagatttatgttttaggctatgattcattctttgtatggtgcgaggttgagaaataaattctttgtatggtgtgaggttgaggtttattatttttcataaagatggccagttgattcagcataattttttgagaccactgtccatttctctttgaattaccttggcccatttgacaaatatcaatttactacatatgtatggatctatttctggactctattctggtccactgatatattcatctatccttttactgatgctaccctgatttaattattgtagctttataataatattattattattattatttt------------gagatggaatctcgctctgtcacccaggctggagtgcaacggtgcaatctcagcccactgcaacctctgtctcccaggttcaagcaattcttctgcctcagcctcccgagtagctgggattacaggcacccgccaccatgcctggctaattt-----------tgtgtgtgtgtgtgtatgtgtgt-------gtgtt-ttcagtagagatggggttttaccatgttagccaggatggtcttgatctcctgactttgtgatccacccacctcaacctTG i colAng1.NW_012115488v1 I 2264 C 0 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45022331 3967 + 71252344 I e calJac3.chr2 112568594 13003 + 204313951 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I a score=5988070.000000 s hg38.chr5_GL383530v1_alt 88315 1349 + 101241 cagctttataatattctttaagccagttaacatgagtccccccc-attttttttataattttaaaaatgattctgactatggtagttatttttgtttctttatacaatgtttgctttccacagtggtgtgggactgtaaaaatggccatgcaagctgaaaccatgcaaaatgattgtaaaaatcaatg-aaaatattactattgttccataacctataaaacattttgatatt-aaaaaatctcttactgcttaaagttatgaaagtataagaaaatgaaaaaatagtacaaccaatactaatttaacatactatagtttcaaacattagaaacattcaaaattaaagtattttatattctgggaaaaaagtgtcaggagtagtttgaacagcgcttgccttcttc---ttgtataacctaccatacagagtgagcatcttctcaatatcttatcaaatcatcatgctcttttctaagtttgaatcaccttccaatgttttctcctttgtgccttcaatatcatgatgtatctttgagaattcctttaaggggaag---tttttcagcaagcgtgacttctggggcatcttcatccttttcttcacacccacttttcctcatgtgtgttgatagctgtgcttcactgagttcctttggttatagagctatagtttctcaaatgatgccagtatcaatattcccatggtcagatatttcttttgtaactctatttacattttatttttattttattttgtgttatcatttgttgtttctttgctgctttttcatctttgttgtctaattctctctttcagtgacccgttttcataaaacatcctatgggtttatcagtgggagacaaagaggcatccaaagtccatgctttgctgtctgtgatgaactgaataaca--aacacagtgagcaatcactaacggatggtgaaaggagtgatgcaattagttactgatcattatgcacatctctcttttcacatagcgatttgtggactgaagggctggtggcaaattttgtatcttatgcaattacttactgttaatctaccatgagaactgaaatttgaagcatgctgttgagggactagggtttttatttaaaatgttgtaactgaaccccatgcatatcaaaagtgtgctaagtgaggattgtctCTCTCTCTCTCTC--------------------------------TCACCCTGTGTATGTATGTGTGTGTGTACTTATAatggaatatcaagaggtatgataatttttatgaaggaaaatgaagagggaacagggatgcgaacaggaagtgctcttttatataaagtcatcatggaagacatcctgctgagctgacctttagg---------caatcaatcaataa s panTro5.chr5 20322333 1344 + 181907262 caGCTTTATAATATTCTTTAAACCAGTTAACATGAGTCCCCCCCCATTTTTTAAATAATTTTAAAAATGATTCTGACTATGGTAGTTATTTTTGTTTCTTTATAcagtgtttgctttccacagtggtgtgggaatgtaaaaatggccatgcaagctgaaaccatgcaaaatgattgtaaaaatcaatg-aaaatgttactattgttccataacctataaaacattttgatatt-aaaaaatctcttactgcttaatgttatgaatgtataagaaaatgaaaaaatagtacaactaatactaatttaacatactatagtttcaaacattagaaacattcaaaattaaagtattttatattctgggaaaaaagtgtcaggagtagtttgaacagcgcttgccttcttc---ttgtataacctaccatacagagtgagcatcttctcaatatcttatcaaatcgtcatgctcttttctaagtttgaatcaccttccaatgttttctcctttgtgccttcaatatcatgatgtatctttgagaattcctttaaggggaag---ttttttggcaagcatgacttctggggcatcttcatccttttcatcccacccacttttcctcatgtgtgttgatagctgtgcttcactgagttcctttggttatagatctatagtttctcaaatgatgccagtatcaatattcccatggtcagatatttcttttgtaactctatttacattttatttttattttattttgtgttatcatttgttgtttctttgctgctttttcatctttgttgtctaattctctctttcaatgacccattttcataaaacatcctatgggtttatcagtgggagacaaagaggcatccaaagtccatgctttgctgtctgtgatgaactgaataaca------cagtgagcaatcactaacggatggtgaaaggagtgatgcaattagttactgatcattatgcacatctctcttttcacatagcgatttgtggactgaagggctggtggcaaattttgtatcttatgcaattacttactgttaatctaccatgagaactgaaatttgaaccatgctgttgagggactagtgtttttatttaaaatgttgtaactgaaccccatgcatatcaaaagtgtgctaagtgaggattgcctCTCTCTCTCTCTC----------------------------------ACCCTGtgtatgtatgtgtgtgtgtatttatAatggaatatcaagaggtatgataatttttatgaaggaaaatgaagagggaacagggatgcgaacaggaagtgctcttttatataaagtcatcatggaagacatcctgctgagctgacctttagg---------caatcaatcaataa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20334524 1344 + 183735486 cagctttataatattctttaaaccagttaacatgagtccccccc-attttttaaataattttaaaaatgattctgactatggtagttatttttgtttctttatacaatgtttgctttccacagtggtgtgggactgtaaaaatggccatgcaagctgaaaccatgcaaaatgattgtaaaaatcaatg-aaaatgttactattgttccataacctataaaacattttgatattaaaaaaatctcttactgcttaatgttatgaatgtataagaaaatgaaaaaatagtacaactaatactaatttaacatactatagtttcaaacattagaaacattcaaaattaaagtattttatattctgggaaaaaagtgtcaggagtagtttgaacagcgcttgccttcttc---ttgtataacctaccatacagagtgagcatcttctcaatatcttatcaaatcgtcatgctcttttctaagtttgaatcaccttccaatgttttctcctttgtgccttcagtatcatgatgtatctttgagaattcctttaaggggaag---ttttttggcaagcatgacttctggggcatcttcatccttttcatcccacccacttttcctcatgtgtgttgatagctgtgcttcactgagttcctttggttatagatctatagtttctcaaatgatgccagtatcaatattcccatggtcagatatttcttttgtaactctatttacattttatttttattttattttgtgttatcatttgttgtttctttgctgctttttcatctttgttgtctaattctctctttcaatgacccattttcataaaacatcctatgggtttatcagtgggagacaaagaggcatccaaagtccatgctttgctgtctgtgatgaactgaataaca------cagtgagcaatcactaacggatggtgaaaggagtgatgcaattagttactgatcattatgcacatctctcttttcacatagcgatttgtggactgaagggctggtggcaaattttgtatcttatgcaattacttactgttaatctaccatgagaactgaaatttgaaccatgctgttgagggactagtgtttttatttaaaatgttgtaactgaaccccatgcatatcaaaagtgtgctaagtgaggattgcctCTCTCTCTCTCTC----------------------------------ACCCTGtgtatgtatgtgtgtgtgtatttatAatggaatgtcaagaggtatgataatttttatgaaggaaaatgaagagggaacagggatgcgaacaggaagtgctcttttatataaagtcatcatggaagacatcctgctgagctgacctttagg---------caatcaatcaataa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4821184 1347 - 13748885 cagctttataatattctttaaaccagttaacatgagtccccccc-catttttttataattttaaaaatgattctgactatggtagttatttttgtttctttatacaatgtttgctttccacagtggtgtgggactgtaaaaatggccatgcaagctgaaaccatgcaaaatgattgtaaaaatcaatg-aaaatgttactattgttccataacctataaaacattttgatatt-aaaaaatctcttactgcttaaagttatgaatgtataggaaaatgaaacaatagtacaactaatactaatttaacatactatagtttcaaacattagaaacattcaaaattaaagtattttatattctgggaaaaaagtgtcaggagtagtttgaacagcgcttgccttcttc---ttgtataacctaccatacagagtgagcatcttctcaatatcttatcaaatcgtcatgctcttttctaagtttgaatcaccttccaatgttttcttctttgtgccttcaatatcatgatgtatctttgagaattcctttaaggggaag---ttttttggcaagcatgacttctggggcatcttcatccttttcatcacacccacttttcctcatgtgtgttgatagctgtgcttcactgagttcctttggttatagatctgtagtttctcaaatgatgccagtatcaatatttccatggtcagatatttcttttgtaactctatttacattttatttttattttattttgtgttatcgtttgttgtttctttgctgctttttcatctttgttgtctaattctctctttcaatgacccattttcataaaacatcctatgggtttatcagtgggagacaaagaggcatccaaagtccatgctttgctgtctgtgatgaactgaataaca--aacacagtgagcaatcattaatggatggtgaaaggagtgatgcaattagttactgatcattatgcacatctctcttttcacatagtgatttgtggactgaagggctggtggcaaattttgtatcttatgcaattacttactgttaatctaccatgagaactgaaatttgaaccatgctgttgagggactagtgtttttatttaaaatgttgtaactgaaccccatgcatatcaaaagtgtgc----tgaggattgcctctctctctctctc------------------------------tctcACCCTGTGTATGTATGTGTGTGTGTATTTATAatggaatatcaagaggtatgataatttttatgaaggaaaatgaagagggaacacagattggaacaggaagtgctcttttatataaagtcatcatggaagacatcctgctgagctgacctttagg---------caatcaatcaataa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53853724 1358 - 163208435 cagctttataatattatttaaatcagttaacatgagtcccccca-ttttttttattcttttaaaaaatgattctgactatGGTAGTTATTTTTATTTCTTTATAcaatgtttgctttccacagtggtgtgggactgtaaaaatggccatgcaagctgaaaccatgcaaaatgattgtaaaaatcaatg-aaaatgctactattgttccataacgtataaaacattttgatatt-aaaaaatctcttactgcttaaagttatgaatgtataggaaaatgaaaaaatagtacaactaatactaatttaacatactatagtttcaaacattagaaacattcaaaattaaagtattttatattctgggaaaaaagtatcaggagtagtttgaacagtgcttgccttcttcttgttgtataacctaccatacagcctgagcatcttctcaatatcttatcaaatcgtcatactcttttctaagtttgaatcaccttccaatgttttctcctttgtgccttcaatatcatgatgtatctttgagaattcctttaaggggaag---ttttt-ggcaagcatgacttctggggcatcttcatccttttcatcacacccacttttcctcatgtgtgttgatagctgtgcttcactgagttcctttggttatagatctatagtttctcaaatgatgccagtatcaatattcccatggtcagatctttcttttgtgactctatttacattttat-----ttttattttgtgttatcatttgttgtttctttgctgctttttcatctttgttgtctaattctctctttcaatgacccattttcataaaatatcctatgggtttatcagtgggagacaaagaggcatccgaagtccatgctttgctgtctgtgatgaactgaataaca--aacacagtgagcaatcactaacggatgttgaaaggagtgatgcaattagttactgatcattatgcacatctcttttttcacatagcgatttgtggactgaagggctggtggcaaattttgtatcttatgcaattacttactgttaatctaccatgagaactgaaatttgaaccatgttgttgagggactagtgtttttatttaaaatgttgtaactgaaccccatgcatatcaaaagtgtgctaagtgaggattgcctctctctctctctctct--------------------ctctctctctcGCCCTGTGTATGTATGTGTGTGTGTATTTATAatggaatatcaagaggtatgataatttttatgaagtaaaataaagagggaacagggatgcgaacaggaagtgctcctttatataaagtcatcatggaagacatcctgctgagctgacctttagg---------caatcaatcaataa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87874603 1358 - 180051392 cagctttgtaatatgctttaaatcagttaacatgagtcccctc--aatttttcattctttttaaaaatggttctgattattgtagTTATTtttatttctttatacaatgtttgctttccacagtagtgtgggactgtaataatggccatgcaagctgaa---atgcaaaatgattg-----------------------tattgttccataacctataaaaca-tttaatatt-taaaaatctctgactgcttaaagttatgattgtataggaaattgaaaaaatagtacaactaatagtaatttaacatactatagtttcaaacattagaaacattcaaaattaaagtattttatattctgggaaaaaagtatcaggagtagtttgaacagtgcttgccttcttg---tcgtataacctaccatacagagtgagcgtcttctcaatatctggtcaaatcgtcatattcttttctgaatctgaagcaccttccaatgttttctcctttgtgccttcaatatcatgatgtatcttggagaattcctttaaggggaag--tttttttggcaagcatgacttccggggcatcttcatccttttcatcacacccacttttcctcatgtgtgttgatagctgcgcctcactgagttcctttggttatatatctatagtttctcaaacgatgccagtattaatatccccatggtcagatatttcttttgtaactctatttacattttatttctgttttattttgtgttatcatttgttgtttctttgctgctttttcatctttgttgtctaattgtctctttcagtgactcattttcataaaacatcatatgggtttatcagtgggagacaaagaggcatccaaagtccatgctttgctgtctgtgatgaactgaataacagaaacacagtgagcaatcactaacagatgttgaaagaagtgatgcagttagttactgatcattatacacatctctttttttacatagtgatttgtggactgaagggttggtggcaaattttgtaccttatggaattccttactgttaatctaccatgagaacggaaatttgaatcatattgttgagggactagtgtttttatttaaaatgttgtaactgaaccccatgcacatcaaaagtgtgc----tgaggattgcctctctttctctctttctgtctctctcgctcactctcgctctcGCCCTTGCCCTGTGTATGTATGTGTGTGTGTATTTATAATGAAatgtcaagaggtgtgataatttttatgaagtaaaatgaaggtggaacaggcatgtgaacaggaagtgctcctttatataaagtcatcatggaagacatcctgctgagctgacctctaag----taaataaataaataaataa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87979006 1356 - 181584905 cagctttgtaatatgctttaaatcagttaacatgagt-ccctc--aatttttcattctttttaaaaatggttctgattattgtagttatttttatttctttatacaatgtttgctttccacagtagtgtgggactgtaataatggccatgcaagctgaa---atgcaaaatgattg-----------------------tattgttccataacctataaaaca-tttaatatt-taaaaatctctgactgcttaaagttatgattgtataggaaattgaaaaaatagtacaactaatagtaatttaacatactatagtttcaaacattagaaacattcaaaattaaagtattttatattctgggaaaaaagtatcaggagtagtttgaacagtacttgccttcttg---tcgtataacctaccatacagagtgagcgtcttctcaatatctggtcaaatcgtcatattcttttctgagtctgaagcaccttccaatgttttctcctttgtgccttcaatatcatgatgtatcttggagaattcctttaaggcgaag--tttttttggcaagcatgacttccggggcatcttcatccttttcatcacacccacttttcctcatgtgtgttgatagctgcgcctcactgagttcctttggttatatatctgtagtttctcaaacgatgccagtattaatatccccatggtcagatatttcttttgtaactctatttacatttcatttctgttttattttgtgttatcatttgttgtttctttgctgctttttcatctttgttgtctaattctctctttcagtgactcattttcataaaacatcatatgggtttatcagtgggagacaaagaggcatccaaagtccatgctttgctgtctgtgatgaactgaataacagaaacacagtgagcaatca-taacggatgttgaaaggagtgatgcagttagttactgatcattatacacatctctttttttacatagtgatttgtggactgaagggttggtggcaaattttgtaccttatggaattccttactgttaatctaccatgagaacggaaatttgaatcatattgttgagggactagtgtttttatttaaaatgttgtaactgaaccccatgcacatcaaaagtgtgc----tgaggattgcctctctttctctctttctgtctctctcgctcacgctcgctctcGCCCTTGCCCTGTGTATGTATGTGTGTGTGTATTTATAATGAAatgtcaagaagtgtgataatttttatgaagtaaaatgaaggtggaacaggcatgtgaacaggaagtgctcctttatataaagtcatcatggaagacatcctgctgagctgacctctaag----taaataaataaataaataa i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1206401 1384 - 8785636 cagctttgtaatatgctttaaatcagttaacatgagtcccctc--aatttttcattctttttaaaaatggttctgattattgtagTTATTtttatttctttatacaatgtttgctttccacagtagtgtgggactgtaataatggccatgcaagctgaa---atgcaaaatgattgtaaaaatcaatg-aaaatgctactattgttccataacctataaaaca-tttaatatt-taaaaatctctgactgcttaaagttatgattgtataggaaattgaaaaaatagtacaactaatagtaatttaacatactatagtttcaaacattagaaacattcaaaattaaagtattttatattctgggaaaaaagtatcaggagtagtttgaacagtgcttgccttcttg---tcgtataacctaccatacagagtgagcgtcttctcaatatctggtcaaatcgtcatattcttttctgagtctgaagcaccttccaatgttttctcctttgtgccttcaatatcatgatgtatcttggagaattcctttaaggggaag--tttttttggcaagcatgacttccggggcatcttcatccttttcatcacacccacttttcctcatgtgtgttgatagctgcgcctcactgagttcctttggttatatatctatagtttctcaaacgatgccagtattaatatccccatggtcagatatttcttttgtaactctatttacattttatttctgttttattttgtgttatcatttgttgtttctttgctgctttttcatctttgttgtctaattctctctttcagtgactcattttcataaaacatcatatgggtttatcagtgggagacaaagaggcatccaaagtccatgctttgctgtctgtgatgaactgaataacagaaacacagtgagcaatcactaacggatgttgaaaggagtgatgcagttagttactgatcattatacacatctctttttttacatagtgatttgtggactgaagggttggtggcaaattttgtaccttatggaattccttactgttaatctaccatgagaacggaaatttgaatcatattgttgagggactagtgtttttatttaaaatgttgtaactgaaccccatgcacatcaaaagtgtgc----tgaggattgcctctctttctctctttctgtctctctcgctcactctcgctctcGCCCTTGCCCTGTGTATGTATGTGTGTGTGTATTTATAATGAAatgtcaagaggtgtgataatttttatgaagtaaaatgaaggtggaacaggcatgtgaacaggaagtgctcctttatataaagtcatcatggaagacatcctgctgagctgacctctaagtaaataaataaataaataaataa i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1939710 1383 - 91010382 cagctttacaatattctttaaatcagttaacatgagtcccctc--aatttttcattctttttaaaaatgattctgactattgtggttatttttatttctttatacaatgtttgctttccacagtaatgtgggactgtaataatggccatgcaagctgaa---atgcaaaatgattgtaaaagtcaatg-aaaatgctactattgttccataacctataaaacattttgatatt-taaaaatctctgactgcttaaagttatgaatgtataggagattgaaaaaatagtacaactaatagtaatttaacatactatagtttcaaacattagaaatattcaaaattaaagtattttatatcctgggaaaaaagtatcaggagtagtttgaacagtgcttgccttcttg---tcgtataacctaccatacagagtgagcgtcttctcaatatctggtcaaatcgtcatattcttttctgagtttgaagcaccttccaatgttttctcctttgtgccttcaatatcatgatgtatctttgagaattcctttaaggggaagtttttttttggcaagcatgacttctggggcatcttcatcctttgcatcacacccacttttcctcatgtgtgttgatagctgcgcctcactgagttcctttggttgtatatctatagtttctcaaacgatgccagtattaatattcccatggtcagatatttcttttgtaactctatttacattttatttctgttttattttgtgttatcatttgttgtttctttgctgctttttcatctttgttgtctaattctctctttcagtgactcattttcagaaaacatcatatgggtttatcagtgggagacaaagaggcatccaaagtccatgctttgctctctgtgatgaactgaataacagaaacacagtgagcaatcactaacggatgttgaaaggagtgatgcagttagttactgatcattatacacatctctttttttacatagcaatttgtggactgaagggttggtggcaaattttgtaccttatggaattccttactgttaatctaccatgagaatggaaatttgaatcatattgttgagggactagtgtttttatttaaaatgttgtaactgaaccccatgcatatcgaaagtgtgc----tgacgattgcctctctctctctctttctgtctctctcgctcgctctcgctctggcccttgccctGTGTATGTATGTGTGTGTGTATTTATAatggaatgtcaagatgtatgataatttttatgaagtaaaatgaagatggaacaggcatgtgaacaggaagtgctcctttataaaaagtcatcatggaagacatcctgctgagctgacctttaag----taaataaataaataaataa i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7760925 1373 - 21726897 CAGCTTTATAATATGCTTTAAATCAGTTAACATGAGTCCCCTC--AATTTTTCATTCTTTTTAAAAATGATTCTGGTTATTGTAGTTATTTTTATTTCTTTATAcaatgtttgctttccacagtagtgtgggactgtaataatggccatgcaagctgaa---atgcaaaatgattgtaaaaatcaatg-aaaatgctactcttgttccataacctataaaatattttgatatt-taaaaatctctgactgcttaaagttatgaatgtataggaaattgaaaaaatagtacaactaatagtaatttaacatactatagtttcaaacattagaaacattcaaaattgaagtattttatatcctgggaaaaaagtatcaggagtagtttgaacagtgcttgccttcttg---tcgtataacctaccatacagagtgagtgtcttttcagtatctggtcaaatcaccatactcttttctgagtttgaagcaccttccaatgttttctcctttgtgccttcaacatcatgatgtatctttgagaattcctttaaggggaag--tttttttggcaaacatgacttctggcgcatcttcatccttttcatcacacccacttttcctcatgtgtgttgatagctgtgcctcactgagttcctttggttatatatctatagtttctcaaatgatgccagtattaatattcccatggtcagatatttcttttgtaactctatttacattttatttctgttttattttgtgttatcatttgttgtttctttgctgctttttcatctttgttgtctaattctctctttcagtgactcattttcataaaacatcacatgggtttatcagtgggagaccaggaagcatccaaagtccgtgctttgctgtctgtgatgaactgaataacagaaacacagtgagcaatcactaacggatgttgaaaggagtgatgcagttagttactgatcattatgcacatctctttttttacatagtgatttgtggactgaagggttggtggcaaattttgtaccttatggaattccttactgttaatctaccatgagaactgaaatttgaaccatattgttgagggactagtgtttttgtttaaaatgttgtaactgaaccccatgcatatcaaaagtgtgc----tgaggattgcctctctttctctctct------------ctcactctcgctctcGCCTTTGCCCTGTGTATGTATGTGTGTGTGTATTTATAatggaatgtcaagaggtatgataatttttatgaagtaaaatgaagatggaacaggcatgtgaacaggaagtgctccttcatataaagtcatcatggaagacatcctgctgagctgacctttaagtaaataaataaataaataaataa i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 45026298 1333 + 71252344 cagctttataatattctttaaatcagttaacatgagtcccccc--aatattttattctttttaaaaatAATTA----TATTGTAG---TTTTCATTTCGTTATAcagtgtttgctttgcacagtagtatgggaatgtaaaaatggccatgcaagctgaaaccatgcaaaatgattgtggaaatcaatgaaaaatgctactattgttccataacctataaaacattttgatatt-aaaatatctctca-tgcttaaagttatgaatgtataggaaaatgaaaaaataatacaactaatattaatttaacatactgtagtttcaaacattagaaacattaaaaattaaagtattttatattctaggaaaaaactatcaggagtagt-------gtgcttgccttcttg---ttatataacctatgatacagagtgaatatcttctcaatatcttgtaaaattgtcatattcttttctgagtttgaagcagcttccagtgttttctccttcatgctttcaatattgtgatgtatctttgagaattcccttaaggggaag---gttattggcaagcatgacttctgggacatcttcattcttttcatcacacccacttttcctcatgggtattgacagctatgcttcactgagttcctttggttgtatacatagagtttctcaaatgatgccactataaatattccagtagtcagatatttcttttgtaagtcaatttatattttattcctatttta-tttgtgttatcatt-----tttctttgctgctttttcatctttgttgtctaattctctcttttaattactcgttttcataaaatatcatataggtttgtcgatgggacacaaagaggcatccaaagtccatgcttttctgtctgtgatgaactgaataacagaaacacagtgagcaatcactaatggatgctgaaag-agtgatgcaattagttactgattgttatgtgcatctctttttttacatagtgatttgtggactgaagagctggtggcaaatttggtaccttacacaattacttactgttactctaccacgagaactgaaatttgcaccatgttgttgaaggactggtgtttttatttaaaatgttgtaactgaaccccatgcatatcaaaagtgtgcaaagtgaggattgcctCTCTCTCTCTCTGTTT----------------------------CTCCCCCTGTGTATGTATGTGTGTGTGTATTTATAatggaatgtcaagatgtatgatcattgttttgaagtaaaataaagggggaacagggatataaatgggaagtgctcgttcatataaactaatcatgaaaggcattctgctgagctgaccttcaag---------caagcaagcaacaa i saiBol1.JH378106 I 3967 I 3893 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e calJac3.chr2 112568594 13003 + 204313951 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I a score=1714892.000000 s hg38.chr5_GL383530v1_alt 89664 471 + 101241 agcactgctaagattgaaggaggtggggaatattatgtggaaggaatagcaaatgcaaatcccccaaaagaggaatgagcttgtagtataaaaacagcagaatgtagac-gtgtagctagagtgagctagagggagagaattagaagatgagcttggagaagcacaaagaggacagatcacaggagcccttgtaggctgtggtaaagagtttggattttatactttgtgtgatgagaagctgccagacagttttaatcagaggagtgatgtgattcaatatgcatttttagaggatcattctggaaactgagctaaaagttgactatggaatagctatagtggaaacaagaaaaccccttcctggctggaggccaagttgggaggtttttgcagcagttcaggtgaggaataatgatggtttggaccagggttttagcaatagggtttaagaagaggtcagcttcagggtat s panTro5.chr5 20323677 471 + 181907262 agcactgctaagattgaaggaggtggggaatattatgtggaaggaatagcaaatgcaaatcccccaaaagaggaatgagcttgtagtataaaaagagcagaatgtagat-gtgtagatagagtgagcgagagggagagaattagaagatgagcttggagaagcacgaagaggacagatcacagaagcccttgtaggctgtggtaaagagtttggattttatacattgtgtgatgagaagccaccggacagttttaatcagaggagtgatgtgattcaatatgcatttttagaggatcattctggaaactgagctaaaagttgactatggaatagctatagtggaaacaagaaaaccccttcctggctggaggccaagttgggaggtttttgctgcagttcaggtgaggaataatgatggtttggaccagggttttagcaatagagtttaagaagaggtcagcttcagggtat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20335868 471 + 183735486 agcactgctaagattgaaggaggtggggaatattatgtggaaggaatagcaaatgcaaatcccccaaaagaggaatgagcttgtagtataaaaagagcagaatgtagat-gtgtagatagagtgagcgagagggagagaattagaagatgagcttagagaagcacgaagaggacagatcacagaagcccttgtaggctgtggtaaagagtttggattttatacattgtgtgatgagaagccaccggacagttttaatcagaggagtgatgtgattcaatatgcatttttagaggatcattctggaaactgagctaaaagttgactatggaatagctatagtggaaacaagaaaaccccttcctggctggaggccaagttgggaggtttttgctgcagttcaggtgaggaataatgatggtttggaccagggttttagcaatagagtttaagaagaggtcagcttcagggtat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4822531 471 - 13748885 agcactgctaagattgaaggaggtggggaatattatgtggaaggaatagcaaatgcaaatcccccaaaaggggaatgagcttgtagtataagaagagcagaatgtagac-gtgtagctagagtgagcgagagggagagaattagaagatgagcttggagaagcacgaagaggacagatcacagaagcccttgtaggctgtggtaaagagtttggattttatacattgtgtgatgagaagccaccagacagttttaatcagaggagtgaagtgattcaatatgcatttttagaggatcattctggaaactgagctaaaagttgactatggaatagctatagtggaaacaagaaaaccccttcctggctggaggccaagttgggaggtttttgcagcagttcaggtgaggaataatgatggtttggaccagggttttagcaatagggtttaagaagaggtcagcttcagggtat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53855082 453 - 163208435 agcactgctaagattgaaggaggtggggaatattatgtggaaggaatagcaaatgcaaatcccccaaaagaggaatgagcttgtagtataaaaagagcagaatgtagacagtgtagctagagtgagcgagagggagtgaattagaagatgagcttggagaagcacagagaggacagatcacataagtccttgtaggctgtggtaaagagttttgattttatactttgtgtgatgagaagccaccagaggattttagtcaggggagtgatgtgattcagtatgcatttttagagtatcattctggaaactgagttaaaagttgactgtggaatagctatagtggaaacaagaaaacc-------------------agttggggggtttttgcagcagttcaggtgcagaataatgatggtttggaccaaggttttagcaatggggttcaagaagaggtcagcttcaggacat i nomLeu3.chr2 C 0 I 100 s rheMac8.chr6 87875961 449 - 180051392 agcactgctaagattgaaggaggtagggaatattatgtggaaggaatagcaaatgcaaatcctccaaaacaggaatgagcttatagtataa----agcagaacatagacagtgtggctagagtgagccagaggtagagaattagaagatgagcttgaagaagcatggagaggacagatcacagaagcccttgtagattgtggtaaagagtttggattttatactttgtgtgatgagaagccaccagaaggttttaatcagaggagtgatgtgatgccatttgcatttttagaggatcattctggaaactgaactaatagttgactatggaatagctgtagtagaaacaagaaaacc-------------------agttgggaggtttttgcagcagtttaggtgaggaataatgatggtttggaccagggttttaggaatggagtttaagaagaggtcagcttcaggatat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87980362 449 - 181584905 agcactgctaagattgaaggaggtagggaatattatgtggaaggaatagcaaatgcaaatcctccaaaacaggaatgagcttgtagtataa----agcagaacatagacagtgtggctagagtgagccagaggtagagaattagaagatgagcttgaagaagcatggagaggacagatcacagaagcccttgtagattgtggtaaagagtttggattttatactttgtgtgatgagaagccaccagaaggttttaatcagaggagtgatgtgatgccatttgcatttttagaggatcattctggaaactgcactaatagttgactatggaatagctgtagtagaaacaagaaaacc-------------------agttgggaggtttttgcagcagtttaggtgaggaataatgatggtttggaccagggttttagcaatggagtttaagaagaggtcagcttcaggatat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1207785 449 - 8785636 agcactgctaagattgaaggaggtagggaatattatgtggaaggaatagcaaatgcaaaccctccaaaacaggaatgagcttgtagtataa----agcagaacatagacagtgtggctagagtgagccagaggtagagaattagaagatgagcttgaagaagcatggagaggacagatcacagaagcccttgtagattgtggtaaagagtttggattttatactttgtgtgatgagaagccaccagaaggttttaatcagaggagtgatgtgatgccatttgcatttttagaggatcattctggaaactgaactaatagttgactatggaatagctgtagtagaaacaagaaaacc-------------------agttgggaggtttttgcagcagtttaggtgaggaataatgatggtttggaccagggttttagcaatggagtttaagaagaggtcagcttcaggatat i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1941093 449 - 91010382 agcactgctaagattgaaggaggcagggaatattatgtggaaggaatagcaaatgcaaatgctccaaaacaggaatgagcttgtagtataa----agcagaacatagacagtgtagctagagtgagccagaggtagagaattagaagatgagcttgaagaagcgtggagaggacagatcacagaagcccttgtagattgtggtaaagagtttggattttatactttgtgtgatgagaagccaccagaaggttttaatcagaggagtgatgtgattccatttgcatttttagaggatcattctggaaactgaactaaaagttgactatggaatagctgtagtggaaacaagaaaacc-------------------agttgggaggtttttgcagcagtttaggtgaggaataatgatggtttggaccaggattttagcaatggagtttaagaagaggtcagcttcaggatat i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7762298 453 - 21726897 agcactgctaagattgaaggaggtagggaatattatgtggaaagaatagcaaatgcaaatcctccaaaacaggaatgagcttgtagtataaaaagagcagaatgtagacagtgtagctagagtgagccagaggtagacaattagaagacgagtttgaagaagcatggagaggacagatcacagaagcccttgtagattgtggtaaagagtttggattttatactttgtgtgatgagaagccaccagaaggttttaatcagagaagtgatgtgattccatttgcatttttagaggatcattctggaaactgagctaaaagttgactatggaatagctgtagtagaaacaagaaaacc-------------------agttgggaggtttttgcagcagttcaggtgaggaataatgatggtttggaccagggttttagcaatggagtttaagaagaggtcagcctcaggatat i colAng1.NW_012115488v1 C 0 C 0 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45027631 3893 + 71252344 I e calJac3.chr2 112568594 13003 + 204313951 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I a score=2203275.000000 s hg38.chr5_GL383530v1_alt 90135 691 + 101241 atcctgaagaccaaactgagcaa----actgatagattaggtatgggctgtgagggaaagaaaggaattaaagatcattcctaagtttttggctagggcaagtaagggtataatggtatgatatataaagatggagaagatgggaagcagcagctgggaagggaaaattaaaagttttcctttagatgtgataagttgagaggaatattatcacctattctagagctcagggaagagacggtggctagagatacaaatttgggagtcattgatatataaatgctatttaaaacctcaaactggttgagaatcatatagggagttacta---gatacagaacagtaagaggttaaggactatacccggtagtgccccgaactgtagacgtgagatagacagggaaagtttagcaaaagagaaagagcagccagagaggtggtggaaaagccaagaaagcacagtgcccagaaaccaaattttagtaacatgtgaagaaggaggaagctttcagctttggtcaaaatgctcctaagaggtcaagtagtgtggactaattaaccattgaaactggaatattaagatcaatctggacctagacagggttgttttgctggagtaacatggcctaaggcccaactggaatgtttggaggcagacagggaggtgggaatggagagggaaaatagTGACTGCCTCC s panTro5.chr5 20324148 691 + 181907262 atcctgaagaccaaactgagcaa----acggatagattaggtatgggctgtgagggaaagaaaggaattaaagatcattcctaagtttttggctagggcaagtaagggtataatggtatgatatataaagatggagaagatgggaagcagcagctgggaagggaaaattaaaagttttcctttagatgtgataagttgagaggaatattatcacctattctagagctcagggaagagacggtggctagagatacaaatttaggagtcattgatatataaatgctatttaaaacctcaaactggttgagaatcatatagggagttacta---gatacagaacagtaagaggttaaggactatacccagtagtgccccaaactgtagacgtgagatagacagggaaagtttagcaaaagagaaagagcagccagagaggtggtggaaaagccaagaaagcacagtgcccagaaaccaaattttagtagcatgtgaagaaggaggaagctttcagctttggtcaaaatgctcctaagaggtcaagtagagtggactaattaatcattgaaactggaatattaagatcaatctggacctagacagggttgttttggtggagtaacatggcctaatgcccaactggaatgtttggaggcagacagggaggtgggaatggagagggaaaatagTGACTGCCCCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20336339 691 + 183735486 atcctgaagaccaaactgagcaa----actgatagattaggtatgggctgtgagggaaagaaaggaattaaagatcattcctaagtttttggctagggcaagtaagggtataatggtatgatatataaagatggagaagatgggaagcagcagctgggaagggaaaattaaaagttttcctttagatgtgataagttgagaggaatattatcacctattctagagctcagggaagagacggtggctagagatacaaatttaggagtcattgatatataaatgctatttaaaacctcaaactggttgagaatcatatagggagttacta---gatacagaacagtaagaggttaaggactatacccggtagtgccccaaactgtagacgtgagatagacagggaaagtttagcaaaagagaaagagcagccagagaggtggtggaaaagccaagaaagcacagtgcccagaaaccaaattttagtagcatgtgaagaaggaggaagctttcagctttggtcaaaatgctcctaagaggtcaagtagagtggactaattaatcattgaaactggaatattaagatcaatctggacctagacagggttgttttggtggagtaacatggcctaatgcccaactggaatgtttggaggcagacagggaggtgggaatggagagggaaaatagTGACTGCCCCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4823002 691 - 13748885 atcctgaagaccaaactgagcaa----actgatagattaggtatgggctgtgagggaaagaaaggaattaaagatcattcctaagtttttggctagggcaagtaagggtataatggtatgatatataaagatggagaagatgggaagcagcagctgggaagggaaaattaaaagttttcctttagatgtgataagttgagaggaatattatcacctattctagagctcagggaagagacggtggctagagatacaaatttaggagtcattgatatataaatgctatttaaaacctcaaactggttgagaatcatatagggagttacta---gatacagaacagtaagaggttaaggactatacccggtagtgccccaaactgtagacgtgagatagacagggaaagtttagcaaaagagaaagagcagccagagaggtggtggaaaagccaagaaagcacagtgcccagaaaccaaattttagtagcatgtgaagaaggaggaagctttcagctttggtcaaaatgctcctaagaggtcaagtactgtggactaattaaccattgaaactggaatatcaagatcaatctggacctagacagggttgttttggtggagtaacatggcctaatgcccaactggaatgtttggaggcagacagggaggtgggaatggagagggaaaatagtgactgcccct i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87876410 695 - 180051392 atcctgaagaccaaactgagcaaactgactgatagattgggtatgggctgtgagggaaagaaaagaattaaagatcattcctaagattttggctagggcaagtaagggtataatggtatcatatataaagatggagaagatgggaagcaacagctgggaagtgaaaattaaaagttttcctttagatatgataggttgaaaggaatattatcacctattctaaagctcagggaagagatggtggctagtgatacaaatttaggagtcattgatatatagacgctatttaaaacctcaaactggttgacaatcatagaggaagttacta---gatatagaacagtaagaggttaaggactatacctgatagtgccccaaactgtagacgtgagatggacagggaaagtttggcaaaagagaaagagcagccagagaggtggtggaaaagccaagaaagcacagtgcccagaaaccaaattttagtagcatgtgaagaaggaggaagcactcagatttggtcaaaatgctcctaagaggtcaagtagtgtggactaattaaccgttgaaactggaatattaagatcaatctggacctagacagggttattttagtggagtaacagggcctaatgcccagctggaatgtttggaggcagacagggaggtgggaatggaaagggaaaatagTGACTGCACCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87980811 695 - 181584905 atcctgaagaccaaactgagcaaactgactgatagattgggtatgggctgtgagggaaagaaaagaattaaagatcattcctaagattttggctagggcaagtaagggtataatggtatcatatatatagatggagaagatgggaagcaacagctgggaagtgaaaattaaaagttttcctttagatatgataggttgaaaggaatattatcacctattctaaagctcagggaagagatggtggctagtgatacaaatttaggagtcattgatatatagatgctatttaaaacctcaaactggttgacaatcatagaggaagttacta---gatatagaacagtaagaggttaaggactatacctgatagtgccccaaactgtagacgtgagatggacagggaaagtttggcaaaagagaaagagcagccagagaggtggtggaaaagccaagaaagcacagtgcccagaaaccaaattttagtagcatgtgaagaaggaggaagcactcagatttggtcaaaatgctcctaagaggtcaagtagtgtggactaattaaccgttgaaactggaatattaagatcaatctggacctagacagggttattttagtggagtaacagggcctaatgcccagctggaatgtttggaggcagacagggaggtgggaatggaaaGGGAAAATAGTGACTGCACCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1208234 698 - 8785636 atcctgaagaccaaactgagcaaactgactgatagattgggtatgggctgtgagggaaagaaaagaattaaagatcattcctaagattttggctagggcaagtaagggtataatggtatcatatataaagatggagaagatgggaagcaacagctgggaagtgaaaattaaaagttttcctttagatatgataggttgaaaggaatattatcacctattctaaagctcagggaagagatggtggctagtgatacaaatttaggagtcattgatatatagatgctatttaaaacctcaaactggttgacaatcatagaggaagttactagatgatatagaacagtaagaggttaaggactatacctgatagtgcccccaactgtagacgtgagatggacagggaaagtttggcaaaagagaaagagcagccagagaggtggtggaaaagccaagaaagcacagtgcccagaaaccaaattttagtagcatgtgaagaaggaggaagcactcagatttggtcaaaatgctcctaagaggtcaagtagtgtggactaattaaccgttgaaactggaatattaagatcaatctggacctagacagggttattttagtggagtaacagggcctaatgcccagctggaatgtttggaggcagacagggaggtgggaatggaaagggaaaatagTGACTGTACCC i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1941542 695 - 91010382 atcctgaagatcaaactgagcaaactgactgatagattgggtatgggctgtgagggaaagaaaagaattaaagatcattcctaagattttggctagggcaagtaagggtataatggtatcatatataaagatggagaagatgggaagcaacagctgggaagtgaaaattaaaagttttcctttagatatggtaagttgaaaggaatattatcacctattctaaagctcagggaagagatagtggctagtgatacaaatttaggagtcattgatatatagatgctctttaaaacctcaaactggttgacaatcatagaggaagttacta---gatatagaacagtaagaggttaaggactatacctggtagtgccccaaactgtagacgtgagatagacaggaatagtttggcaaaagagaaagagcagccagaggggtggtggaaaagccaagaaagcacagtgcccagaaaccaaattttagtagcatgtgaagaaggaggaagctctcagatttggtcaaaatgctcctaagagatcaagtagtgtggactaattaaccgttgaaactgaaatattaagatcaatctagacctagacagggttgttttagtggagtaacacggcctaatgcccagctggaatgtttggaggcagacagggaggtgggaatggaaaGGAAAAATAGTGACTGCCCCC i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7762751 695 - 21726897 atcctgaagaccaaactgagcaaactgactgatagattaggtatgggctgtgagggaaagaaaagaattaaagatcattcctaagattttggctagggcaagtaagggcataatggtatcatatataaagatggagaagatgtgaagcaacagctgggaagcgaaaattaaaagttttcctttagatatgataagttgaaaggaatattatcacctattctaaagctcagggaagagatggtggctagtgatacaaatttaggagtcattgatatatagatgctatttaaaacctcaaactggttgacaatcatagaggaagttacta---gatatagaacagtaagaggttaaggactatacctggtagtgccccaaactgtagacgtgagatagacagggaaagttcagcaaaagagaaggggcagccagagaggtggtggaaaagccaagaaagcacagtgcccagaaaccaaagtttagtagcatgtgaagaaggaggaagctctcagatgtggtcaaaatgttcctaagaggtcaagtagtgtggactaattaaccgttgaaactggaatattaagatcaatctggacctagacagggttgttttagtggagtaacagggcctaatgcccagctggaatgtttggaggcagacagggaggtgggaatggaaagggaaaatagTGACTGCCCCC i colAng1.NW_012115488v1 C 0 C 0 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45027631 3893 + 71252344 I e calJac3.chr2 112568594 13003 + 204313951 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e nomLeu3.chr2 53855535 100 - 163208435 I a score=5059585.000000 s hg38.chr5_GL383530v1_alt 90826 1390 + 101241 TAcattgtttctttgttgactttttgtcttcatgacctgtctagtgctgacagtggagtattcaagtcccccactattgttgtgttgccttctgtttcatttggtaggtctagtagtaattgttttataaatttgggagctccagtgttaggtgcatatgtatatttaggattgtgatattttcctgttggattagtccttttatcattgtataatgtccctctttgtctttcttaactgctgttgctttaaagtttgttttattctgatataggaatagctactcctgcttgcttttggtttctatttgaatggaatatctttttctacctctttaccttaagtttatgtgagttc-ctatgtgttaggtgagtctcctgaagacagtagaaacttggttggtgaattcttatccatttgccattctgtatttgt-----------------------------------attgagatgtgagctactattctgtttattgtgctatttgttgcctgaataccttgtttattttttcattgtgttattgttacataagtcctgtgagatttatgctttaaggaggttctattttggtgtgttttgaggatttgtttcaagatttagagcgccttttagcagttcttgtagtgccagattggtagtggtgaattctctcagcatttgttatgtctggaaaagactgtatctttccttcatttatgaagcctagtttctctggat-aaaaaattcttggttgataattgttttgtttaaggaggctaaaataggaccccaattactctagcttgtatggtttctgctaagaaatctgttagtctgataggttttcctttataggttacctgatgcttttgcttcacagcttttaagattctttccttcatcttgactttagataacctgatgactatgtgcctagatgatgatctttttgtaatgaatttcctggatgttctttgagctactcgtatttggatatctagatctcttgcaaggccagaggagatttccttgattattccctgaaatgtgttttccagacttttagatttctcttcttcctcaggaacaccaccagttattcttaggtttggatgcctaacatagtcccaaacttcttggaggctttgttcatttttaaatattttttgtctttg-tctttgtcagattgggttaattcaaaagctttgtctttgagctctgaagttctttcttctgatcattttattctattactgagactttccaatgcattttgcatttctc-taagtgtatccttgatttccagaagtcgtgattgttttttatttatgctatctatttcactgaagatttttcctctcatatcgtgtatcatgtttttgatttctttaagttggagttcacgtttctctagtgcctc s panTro5.chr5 20324839 1390 + 181907262 TAcattgtttctttgttgactttttgtcttcatgacctgtctagtgctgacagtggagtattaaagtcccccactattgttgtgttgccttctatttcatttggtaggtctagtagtaattgttttataaatttgggagctccagtgttaggtgcatatgtatatttaggattgtgatattttcctgttggattagtccttttatcattgtataatgtccctctttgtctttcttaactgctgttgctttaaagtttgttttattctgatataggaatagctactcctgcttgcttttggtttctatttgaatggaatatctttttctacctctttaccttaagtttatgtgagttc-ctatgtgttaggtgagtctcctgaagacagcagaaacttggttggtgaattcttatccatttgccattctgtatttgt-----------------------------------attgagatgtgagctactattctgtttattgtgctatttgttgcctgaataccttgtttattttttcattgtgttattgttacataagtcctgtgagatttatgctttaaggaggttctattttggtgtgttttgaggatttgtttcaagatttagagcgccttttagcagttcttgtagtgccagattggtagtggtgaattctctcagcatttgttatgtctggaaaagactgtatctttccttcatttatgaagtctagtttctctggat-aaaaaattcttggttgataattgttttgtttaaggaggctaaaataggaccccaattactctagcttgtatggtttctgctaagaaatctgttagtctgataggttttcctttataggttacctgatgcttttgcttcacagcttttaagattctttccttcatcttgactttagataacctgatgactatgtgcctagatgatgatctttttgtaatgaatttcctggatattctttgagctactcgtatttggatatctagatctcttgcaaggccagaggagatttccttgattattccctgaaatgtgttttccagacttttagatttctcttcttcctcaggaacaccaccagttattcttaggtttggatgcctaacatagtcccaaacttcttggaggctttgttcatttttaaatattttttgtctttg-tctttgtcagattgggttaattcaaaagctttgtctttgagctctgaagttctttcttctgatcattttattctattactgagactttccaatgcattttgcatttctc-taagtgtatccttgatttccagaagtcgtgattgttttttatttatgctatctatttcactgaagatttttcctctcatatcgtgtatcatgtttttgatttctttaagttggagttcacgtttctctagtgcctc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20337030 1389 + 183735486 TAcattgtttctttgttgactttttgtcttcatgacctgtctggtgctgacagtggagtattaaagtcccccactattgttgtgttgccttctatttcatttggtaggtctagtagtaattgttttataaatttgggagctccagtgttaggtgcatatgtatatttaggattgtgatattttcctgttggattagtccttttatcattgtataatgtccctctttgtctttcttaactgctgttgctttaaagtttgttttattctgatataggaatagctactcctgcttgcttttggtttctatttgaatggaatatctttttctacctctttactttaagtttatgtgagttc-ctatgtgttaggtgagtctcctgaagacagcagaaacttggttggtgaattcttatccatttgccattctgtatttgt-----------------------------------attgagatgtgagctactattctgtttattgtgctatttgttgcctgaataccttgttta-tttttcgttgtgttattgttacataagtcctgtgagatttatgctttaaggaggttctattttggtgtgttttgaggatttgtttcaagatttagagcgccttttagcagttcttgtagtgccagattggtagtggtgaattctctcagcatttgttatgtctggaaaagactgtatctttccttcatttatgaagtctagtttctctggat-aaaaaattcttggttgataattgttttgtttaaggaggctaaaataggaccccaattactctagcttgtatggtttctgctaagaaatctgttggtctgataggttttcctttataggttacctgatgcttttgcttcacagcttttaagattctttccttcatcttgactttagataacctgatgactatgtgcctagatgatgatctttttgtaatgaatttcctggatgttctttgagctactcgtatttggatatctagatctcttgcaaggccagaggagatttccttgattattccctgaaatgtgttttccagacttttagatttctcttcttcctcaggaacaccaccagttattctcaggtttggatgcctaacatagtcccaaacttcttggaggctttgttcatttttaaatattttttgtctttg-tctttgtcagattgggttaattcaaaagctttgtctttgagctctgaagttctttcttctgatcattttattctattactgagactttccaatgcattttgcatttctc-taagtgtatccttgatttccagaagtcgtgattgttttttatttatgctatctatttcactgaagatttttcctctcatatcgtgtatcatgtttttgatttctttaagttggagttcacgtttctctagtgcctc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4823693 1387 - 13748885 tAcattg--tctctgttgactttttgtcttcatgacctgtctagtgctg-cagtggagtattaaagtcccccactattgttgtgttgccttctatttcatttggtaggtctagtagtagttattttataaatttgggagctccagtgttaggtgcatatgtatatttaggattgtgatattttcctgttggattagtccttttatcattgtataatgtccctctttgtctttcttaactgctgttgctttaaagtttgtttcattctgatataggaatagctactcctgcttgcttttggtttctatttgaatggaatatctttttctacctctttaccttaagtttatgtgagttc-ctatgtgttaggtgagtctcctgaagacagcagaaacttggttggtgaattcttatccatttgccattctgtatttgt-----------------------------------attgagatgcgagctactattctgtttattgtgctatttgttgcctgaataccttgtttattttttcgttgtgttattgttacataagtcctgtgagatttatgctttaaggaggttctattttggtgtgttttgaggatttgtttcaagatttagggcgccttttagcagttcttatagtgccagattggtagtggtgaattctctcagcatttgttatgtctggaaaagactgtatctttccttcatttatgaagcctagtttctctggat-aaaaaattcttggttgataattgttttgtttaaggaggctaaaataggaccccaattactctagcttgtacggtttctgctaagaaatctgttagtctgataggttttcctttataggttacctgatgcttttgcttcacagcttttaagattctttccttcatcttgactttagataacctgatgactatgtgcctagatgatgatctttttgtaatgaatttcctggatgttttttgagctactcgtatttggatatctagatctcttgcaaggccagaggagatttccttgattattccctgaaatgtgttttccagacttttagatttctcttcttcctcaggaacaccaccagttattcttaggtttggatgcctaacatagtcccaaacttcttggaggctttgttcatttttaaatattttttgtctttg-tctttgtcagattgggttaattcaaaagcttcgtctttgagctctgaagttctttcttctgatcattttattctattactgagactttccaatgcattttgcatttctc-taagtgtatccttgatttccagaagtcgtgattgttttttatttatgctatctatttcactgaaaatttttcctctcatatcgtgtatcatgtttttgatttctttaagttggagttcacgtttctctagtgcctc i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87877105 1357 - 180051392 TAcattgtttctttgttgactttctgtcttgatgacctgtctagtactgacagtggagtattagaataccccactattattatgttgccatctatctcatttcttaggtctagtagtaattgttttataaatttgggaactccagtgtta---gcatatatatatttaagattgtgatattttcctgttggactcgtccctttatcattgtataatgtccctctttgtcattcttaactgctgttgctttaaagtttgtttt-ttctgatatagaaatagctact-ctgcttgcttttggtttttatttgaatggaatatctttttccacccctttaccttaagtttatgtgaattc-ttatgtgttaggtgagtctcctgaagacagcagaaacttggttggtgaattcttatccatttgccattctgtgtttgt-----------------------------------attcagatgtgaggtactattctatttattgtgctatttgttgcctgaataccttgatta-ttttttagtgtgttattgttatataggtcctgtgagatttatgctttaaggaggttctattttggtgtgttttgaggatttgtttcaagatttagagctccttttagcagttcttgtagtgccagattggcagtgttgaattctctcagcatttgttatgtctagaaaagactatatctttc---------------ctagtttctctggat-aaaaaattcttggttgataattgttttgtttaaggaggctaaaataggaccccaattcctctagcttgtagggttgctgctaagaaatctgttaatctgataggctttcctttataggttacctgatgcttttgcctcacagatttt-agattctttccttcatcttgactttagataacctgatgactatgtgcctagacgatgatctttttgcgatgaatttcccagatcttctttgagctattcgtatttggatatctagatctcttgcaaggccaggggagatttccttgattattctctcaaatgtgttttccagacatttagatttctcttcttcctcaggaa---caccagttagtctcaggtttggatgcctaac--agtcccaaacttcttggagactttgttcatttttaa--agttttttttcttg-tctttgtcagattgggttaattcaaaagctttgtctttgaactctgaagttctttttttggatcattttattctattgctgagactttgcaatgcattttgcatttctc-taagtgtatacttgatttccagaagttctgattgttttttatttatg----ctatgtcactgaagatttttcctctcatattgcatgtcatgtttttgatttctttaagttggagttcacctttctctagtgcctc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87981506 1357 - 181584905 TAcattgtttctttgttgactttctgtcttgatgacctgtctagtactgacagtgaagtattagaataccccactattattatgttgccatctatctcatttcttaggtctagtagtaattgttttataaatttgggaactccagtgtta---gcatatatatatttaagattgtgatattttcctgttggactcgtccctttatcattgtataatgtccctctttgtcattcttaactgctgttgctttaaagtttgtttt-ttctgatatagaaatagctact-ctgcttgcttttggtttttatttgaatggaatatctttttccacccctttaccttaagtttatgtgaattc-ttatgtgttaggtgagtctcctgaagacagcagaaacttggttggtgaattcttacccatttgccattctgtgtttgt-----------------------------------attcagatgtgaggtactattctatttattgtgctatttgttgcctcaataccttgatta-ttttttagtgtgttattgttatataggtcctgtgagatttatgctttaaggaggttctattttggtgtgttttgaggatttgtttcaagatttagagctccttttagcggttcttgtagtgccagattggcagtgttgaattctctcagcatttgttatgtctagaaaagactatatctttc---------------ctagtttctctggat-aaaaaattcttggttgataattgttttgtttaaggaggctaaaataggaccccaattcctctagcttgtagggttgctgctaagaaatctgttaatctgataggctttcctttataggttacctgatgcttttgcctcacagatttt-agattctttccttcatcttgactttagataacctgatgactatgtgcctagacgatgatctttttgcgatgaatttcccagatcttctttgagctattcgtatttggatatctagatctcttgcaaggccaggggagatttccttgattattctctcaaatgtgttttccagtcatttagatttctcttcttcctcaggaa---caccagttagtctcaggtttggatgcctaac--agtcccaaacttcttggagactttgttcatttttaa--agttttttttcttg-tctttgtcagattgggttaattcaaaagctttgtctttgaactctgaagttctttctttggatcattttattctattgctgagactttgcaatgcattttgcatttctc-taagtgtatccttgatttccagaagttctgattgttttttatttatg----ctatgtcactgaagatttttcctctcatattgcatgtcatgtttttgatttctttaagttggagttcacctttctctagtgcctc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1208932 1357 - 8785636 TAcattgtttctttgttgactttctgtcttgatgacctgtctagtactgacagtggagtattagaataccccactattattatgttgccatctatctcatttcttaggtctagtagtaattgttttataaatttgggaactccagtgtta---gcatatatatatttaagattgtgatattttcctgttggactcgtccctttatcattgtataatgtccctctttgtcattcttaactgctgttgctttaaagtttgtttt-ttctgatatagaaatagctact-ctgcttgcttttggtttttatttgaatggaatatctttttccacccctttaccttaagtttatgtgaattc-ttatgtgttaggtgagtctcctgaagacagcagaaacttggttggtgaattcttatccatttgccattctgtgtttgt-----------------------------------attcagatgtgaggtactattctatttattgtgctatttgttgcctgaataccttgatta-ttttttagtgtgttattgttatataggtcctgtgagatttatgctttaaggaggttctattttggtgtgttttgaggatttgtttcaagatttagagctccttttagcagttcttgtagtgccagattggcagtgttgaattctctcagcatttgttatgtctagaaaagactatatctttc---------------ctagtttctctggat-aaaaaattcttggttgataattgttttgtttaaggaggctaaaataggaccccaattcctctagcttgtagggttgctgctaagatatctgttaatctgataggcttccctttataggttacctgatgcttttgcctcacagatttt-agattctttccttcatcttgactttagataacctgatgactatgtgcctagacgatgatctttttgcgatgaatttcccagatcttctttgagctattcgtatttggatatctagatctcttgcaaggccaggggagatttccttgattattctctcaaatgtgttttccagacatttagatttctcttcttcctcagaaa---caccagttagtctcaggtttggatgcctaac--agtcccaaacttcttggagactttgttcatttttaa--agttttttttcttg-tctttgtcagattgggttaattcaaaagctttgtctttgaactctgaagttctttctttggatcattttattctattgctgagactttgcaatgcattttgcatttctc-taagtgtatccttgatttccagaagttctgattgttttttatttatg----ctatgtcactgaagatttttcctctcatattgcatgtcatgtttttgatttctttaagttggagttcacctttctctagtgcctc i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1942237 1360 - 91010382 TAcattgtttctttgttgactttctgtcttgatgacctgtctagtgctgacagtggagtattaaagtcccccactattattgtgttgccatctatctcatttcttaggtctagtagtaattgttttataaatttgggagctccagtgttaggtgcatgtatatatttaggattgtgatattctcctgttggactcgtccttttatcattgtataatgtccctctttgtctttcttaactgctgttgctttaaagtttgtttt-ttctgatataggaatagctactcctgcttgcttttggtttccatttgaatggaatatctttttccacccctttaccttaagtttatatgaattc-ttatgtgttaggtgagtctcctgaagacagcagaaacttggttggtgaattcttatccatttgccattctgtgtttgt-----------------------------------attgagatgtgagggactattctatttattgtgctatttgttgcctgaataccttgatta-ttttttattgtgttattgttatataggtcctgtgagatttatgctttaaggaggttctattttggtgtgttttgaggatttatttcaagatttagagctccttttagcagttcttgtagtgccagattggcagtgttgaattctctcagcatttgttatgtctggaaaaggctatatctttc---------------ctagtttctctggat-aaaaaattctcggttgataattgttttgtttaaggaggctaaaataggaccccaattcctctagcgtgtggggtttctgctaagaaatctgttaatctgataggctttcctttataggttacctgatgcttttgcctcacagatttt-agattctttccttcatcttgactttagataacctgaagactatgtgcctagacgatgatctttttgtgatgaatttcccacatcctctttgagctactcgtatttggatatctagatctcttgcaaggccaggggagatttccctgattattccctcaaatgtgttttccagacatttagatttctcttcttcctccggaa---caccagttagtctcaggtttggatgcctaac--agtcccaaacatcttggagactttgttcatttttaa--agttttttttttttctctttgtcagattgggttaattcaaaagctttggctttgagctctgaagt--tttctttggatcgttttattctactgctgagactttgcaatgcattttgcatttctc-taagtgtatccttgatttccagaagttctgcttgttttttatttgtg----ctatgtcactgaagatttttcctctcatatcgcgtatcatgtttttgatttctttaagttggagttcacctttctctagtgcctc i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7763446 1361 - 21726897 TAcattgtttctttgttgactttctgtcttgatgacctgtctagtgctgacagtggagtgttaaagtcccccactattattgtgttgccgtctatctcatttcttaggtctagtagtaattgttttacacatttgggagctccagtgttaggtgcatagatatatttaggattgtgatattttcctgttggactcgtccttttatcgctgtataatgtccctctttgtctttcttaactgctgttgctttcaagtttgtttt-ttctgatagaggaatagctactcctgcttgcttttggtttttatttgaatggaatatctttttccacccctttaccttaagtttatatgaattc-ttatgtgttaggtgagtctcctgaagacagcagaaacttggttggtgaattcttatccatttgccattctgtgtttgt-----------------------------------attgagatatgaggtactattccatttattgtgctatttgttgactgaataccttgatta-ctttttattgtgttattgttatataggtcctgtgagatttttgctttaaggaggttctattttggtgtgttttgaggatttgtttcaagatttagagctccttttagcagttcttgtagtgccagattggcagtgttgaattctctcagcatttgttatgtctgggaaaaactatatctttc---------------ctagtttctctggat-aaaaaattctcggttgataattgttttgtttaaggaggctaaaataggaccccaattcctctagcttgtagggtttctgctaagaaatctgttaatctgataggctttcctttataggttacctgatgcttttgcctcacagatttt-agattctttccttcatcttgactttaaataacatgaagactatgtgcctagatgatgatcttcttgtgatgaatttcccacatcttctttgagctactcgtatttggatatctagatctcttgcaaggccaggggagatttccttgattattccctcaaatgtgttttccagacatttagatttctcttcttcctcaggaa---caccagttagtctcaggtttggatgcctaac--agtcccaaacttcttggagactttgttcatttttaa--agttttttttcttg-tctttgtcatattgggttaattcaaaagctttgtctttgagctctgaagttctttctttggatcgttttattctactgctgagacttcgcaatgcattttgcatttctc-taagtgtatccttgacttccagaagttctgattgttttttatttatt----ctatgtcactgaagatttttcctctcatatcgcgtatcatgtttttgatttctttaagttggagttcacctttctctagtgcctc i colAng1.NW_012115488v1 C 0 C 0 s saiBol1.JH378106 45031524 1397 + 71252344 tgcgttgtttctttgttgactttctgtcttgatgacctgtctagggctggcagtgcagcattaaagccccccactattattgtgttgccatatatctcatttcttaggtctagtagtaattgttttataaatttgggagctccagtgttgggtgcatatatatatttaggattgtgatattttcctgttggattagtcgttttatcattaaataatgtctctctttgtctttcttaactgccgttgctttgaaggttgtttt-ttctga-ataagaatagctactcctgcttgcctttggtgtctatttgaatagagtatctctttccacccctttaccttaagtttatgtgagttctttatgtgttaggtgagtatcctgaagagagcagaaacttggttggtgaattcttatctatttgccattctgtatcttttaagtggagtatttaagctgtttacattcaatgtgattgagatgtgaggtactattctatttattgtgctatttgttgcctgaatactttatt---tttttcattgtgttattgttatataggtcctgtggaatttatgctttaaggaggttctattttggtgtgttttgaggatttgtttcaagatttagagctccttttagcagttctcatagtgccagcttggtggtggttaattc---cagcatttgtcatgtctggaaaagactatatctttccttcatttatgaagcctagtttctttgggtaaaaaaattcttggttgataattgtattgtttaagaaggctaaaacaggaccccaattcctctagcttatagggtttctgccaagaaatctgttagtcggataggttttccattataggttacttgacgcttttgcctcacagcttttaagattcttatcttcatcttaactttagataacttgaggactatatgtctaggtgatgatctttttgtgatgaatttcctagatgttctttgagctactcatatttggatgtctagatcacttacaagg---ggggaattttccttgattat-------------tttttcaaactttcagatttctctt-ttcctctggaa---caccagttattcttaggtttggatgcctaacatagtcccaaacttcttggaggcttagttca-tttaaa--atcttttttctttg-tctttgtcagattgggttaattcaaaagccttgtctttgagctctgaagttctttcttctgcttgtttgattctattgctgaaactttccaatgcattttgcatttctcttaagtatatccttgatttctagaagttgtgattgtttattatttatgctatctatttcactgaagattttccctctcatatcatgtatcatgtttttgatttctttaaattggagttaacctttctctggtacctc i saiBol1.JH378106 I 3893 C 0 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e calJac3.chr2 112568594 13003 + 204313951 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e nomLeu3.chr2 53855535 100 - 163208435 I a score=2044528.000000 s hg38.chr5_GL383530v1_alt 92216 460 + 101241 cttgattagcttaataatgggccttctgaattctttttctggcaattcagaaattttgtcttggtttggatccattactggtgagctggtgtggtctttt-ggggatgttaaagaaacttgttttatcgtaataccagaattatttttctggttccttctcatttggataggctatgtcagagggaagatctggaactcaagtgctgctgttcagattcttttgctccatggggtgctcctttgatgtggtgttctcccccttcccctagggatggggcttcctgagaggcgaactgcagtgattgcttttgctcttctggg-tctagtcacccagcagagcctaccaggctctgagctggtactaaggaatgtctgcaaagtgaaatagac------------------tctgtgtgggtccttgcttgtatttttctttagtgtgctggttttgtgttggttggccttcagccaggaa s panTro5.chr5 20326229 460 + 181907262 cttgattagcttaataatggaccttctgaattctttttctggcaattcagaaatttcatcttggtttggatccattactggtgagctggtgtggtctttt-ggggatgttaaagaaacttgttttatcgtaataccagaattatttttctgattccttctcatttggataggctatgtcagagggaagatctggaactcaagtgctgctgttcagattcttttgctccatggggtgctcctttgatgtggtgttctcccccttcccctagggatggggcttcctgagaggcgaactgcagtgattgcttttgctcttctggg-tctagtcacccagcagagcctaccaggctctgagctggtcctaaggagtgtctgcaaagtgaaatagac------------------tctgtgtgggtccttgcttgtatttttctttagtgtgctggttttgtgttggttggccttcagccaggaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20338419 460 + 183735486 cttgattagcttaataatggaccttctgaattctttttctggcaattcagaaattttatcttggtttggatccattactggtgagctggtatggtctttt-ggggatgttaaagaaacttgttttatcgtaataccagaattatttttctgattccttctcatttggataggctgtgtcagagggaagatctggaactcaagtgctgctgttcagattcttttgctccatggggtgctcctttgatgtggtgttctcccccttcccctagggatggggcttcctgagaggcgaactgcagtgattgcttttgctcttctggg-tctagtcacccagcagagcctaccaggctctgagctggtcctaaggagtgtctgcaaagtgaaatagac------------------tctgtgtgggtccttgcttgtatttttctttagtgtgctggttttgtgttggttggccttcagccaggaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4825080 460 - 13748885 cttgattagcttaataatggaccttctgaattctttttctggcaattcagaaattttgtcttggtttggatccattactggtgagctggtgtggtctttt-ggggatgttaaagaaacttgttttatcgtaataccagaattatttttctggttccttctcatttggataggctatgtcagagggaagatctggaactcaagtgctgctgttcagattcttttgctccatggggtgctcctttgatgtggtgttctcccccttcccctagggatggggcttcctgagaggcgaactgcagtgattgcttttgctcttctggg-tctagtcacctagcagagcctaccaggctctgagctggtactaaggagtgtctgcaaagtgaaatagac------------------tctgtgtgggtccttgcttgtatttttctttagtgtgctggttttgtgttggttggccttcagccaggaa i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87878462 460 - 180051392 cttcattagcttaataatcgaccttctgaattctttttctggcaattcagagattttgtcttggtttggatccattactggtgagctggtgtggtcttct-gggggtaataaagaaacttgttttgttgtaattccagaattatttttctggttccttctcatttggatagactatgtctgagggaagatctggaactcaagtgctactgttcagattcttttgccccatgggatgttcccttgatgtggtgttctcccacttcccctagggatggggcttcctgagaggcaaactgcagtgattgtttttgctcttttggg-tctagtcacccagcgtagcctaccacgctctgaactggtactggggagtgtctgcaaagtgaaatagag------------------tctgtgtgggaccttgcttgtatttttctttagtgtgctggttttgtgttgactggcctctagccaggaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87982863 460 - 181584905 cttcattcgcttaataatcgaccttctgaattctttttctggcaattcagagattttgtcttggtttggatccattactggtgagctggtgtggtcttct-gggggtattaaagaaacttgttttgttgtaattccagaattatttttctggttccttctcatttggatagactatgtctgagggaagatctggaactcaagtgctgctgttcagattcttttgccccatgggatgttcccttgatgtggtgttctcccacttcccctagggatggggcttcctgagaggcaaactgcagtgattgtttttgctcttttggg-tctagtcacccagcggagcctaccaggctctgaactggtactggggagtgtctgcaaagtgaaatagag------------------tctgtgtgggaccttgcttgtatttttctttagtgtgctggttttgtgttgactggcctctagccaggaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1210289 460 - 8785636 cttcattaggttaataatcgaccttctgaattctttttctggcaattcagagattttgtcttggtttggatccattactggtgagctggtgtggtcttct-gggggtattaaagaaacttgttttgttgtaattccagaattatttttctggttccttctcatttggatagactatgtctgagggaagatctggaactcaagtgctgctgttcagattcttttgccccatgggatgttcccttgatgtggtgttctcccacttcccctagggatggggcttcctgagaggcaaactgcagtgattgtttttgctcttttggg-tctagtcacccagcggagcctaccaggctctgaactggtactggggagtgtctgcaaagtgaaatagag------------------tctgtgtgggaccttgcttgtatttttctttagtgtgctggttttgtgttgactggcctctagccaggaa i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1943597 456 - 91010382 cttgattaacttaataatcgaccttctgaattctttttctgtcaattcagagattttatcttggtttggatccattactggtgagctggtgtggtcttct-gggggtatt----aaacttgttttgttgtaataccagaattatttttctggttccttctgatttggatagactatgtctgagggaagatctggaactcaagtgctgctgttcagattcttttgccccatggggtgttcccttgatgtggtgttctcccccttcccctagggatggggcttcctgagaggcaaactgcagtgattgtttttgctcttttggg-tctagtcacccagcggagcctaccaggttctgaactggtactggggagtgtctgtaaagtgaaatagac------------------tctgtgtgggaccttgcttgtatttttctttagtgtgctggtttggggttgatgggcctccagccgggaa i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7764807 460 - 21726897 cttgattaacttaataatcgaccttctgaattctttttctggtaattcagagattttatcttggtttggatccattactggtgagctggtgtggtcttct-gggggtattaaagaaacttgttttgttgtaataccagaattatttttctggttccttctcatttggatagactatgtctgagggaaaatctggaactcaagtgctgctgttcagattcttttgcgccatggggtgttcccttgatgtggtgttctcccccttcccctagggatggggcttcctgagaggcaaactgcagtgattgtttttgctcttttgcg-tctagtcacccagcggagcctaccaggctctgaactggtacaggggtgtgtctgcaaagtgaagtagac------------------tctgtgtgtgaccttgcttgtatttttctttagtgtgctggttttgtgttgattggcctccagccaggaa i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112581597 455 + 204313951 cttgattagcttaataattgacgttctgaattctttttctggcaattcagagattttgtcttgatttggatccattactggtgagctagtgtgatcttttgggggatgttaaagaaccttgttttgttgtaataccagaattatatacctggttccttctcatttggatagactatgtcagagggaagatctggaactcaaatgctgctgttcagattcttttgccccagggggtgctcccttgatgtggtgttctccccctttccctaaggatggggctttctgaagggcaaactgcaatgattatttttgctgttctggtctctagccacccagcagag-ctactgggctctgggctggtagtggggagtgtctgcaaagtgaaatggac--------------------tctgtgggtccttggttttatttttcttcagtgtgctggttttgcgttggtggacctctagcca---- i calJac3.chr2 I 13003 C 0 s saiBol1.JH378106 45032921 464 + 71252344 cttggttagcttaataattgaccttccgaattctttttctggcaattcagagattttgtcttgatttggatccattactggtgagctagtgtgatcttttcggggatgttaaagaaccttgttttgtcgtaataccagaattatatatctgattccttctcatttgaatagactatgtcagagggaagatctggaactcaagtgctgctgttcagattcttttgccccagggggtgctcatttgatgtggtgttctcccactttccctagggatggggctttctgagaggcaaactgcagtcattgtttttgctgttctggtttctagccacccagcagag-ctcctgggcactgggctggtactggg---------------gaAATAGACTGTGGGTCTATTTTTTTTTTTTTGTGGGTCCTTGGTTTTATTTTTCTttggtgtgctggttttgtcttggtagacctccagccaagaa i saiBol1.JH378106 C 0 I 4 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e nomLeu3.chr2 53855535 100 - 163208435 I a score=-4832.000000 s hg38.chr5_GL383530v1_alt 92676 53 + 101241 cacaagagtgcaccactgcactctagcctgggcgacagagcaagactctgtct s panTro5.chr5 20326689 4 + 181907262 -------------------------------------------------gtgg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20338879 4 + 183735486 -------------------------------------------------gtgg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4825540 4 - 13748885 -------------------------------------------------gtgg i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87878922 4 - 180051392 -------------------------------------------------gtgg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87983323 4 - 181584905 -------------------------------------------------gtgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1210749 4 - 8785636 -------------------------------------------------gtgg i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1944053 4 - 91010382 -------------------------------------------------gtgg i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7765267 4 - 21726897 -------------------------------------------------gtgg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112582052 8 + 204313951 -acaa--------------------------------------------atgg i calJac3.chr2 C 0 C 0 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45033385 4 + 71252344 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e nomLeu3.chr2 53855535 100 - 163208435 I a score=2795677.000000 s hg38.chr5_GL383530v1_alt 92729 617 + 101241 cattttccagagcgtatcagctgcagctgtataagcaggatcaggcagtgggtggggttatagagctcccaagagattatgttctttgtcttcagctgccagggcaggcagagaaagaccactaggtgggg-------------------------------acaaggataggcctgtctgatctcagagtctccttgggtgggccttgctgcagctgctgtgggggatgggagtg-tggttctcagcccaatggaggtatgttcacagggggattatggctgcctttgctgagtcacacaggtcaccagggaagtgggggaaagacggcagtcacaggcctcacccagttcccacATAGCCTGCAGTCCACttaggagcatgctgaccaaagtcaagagtttccccattctcaaaacactacagaaatttgatttgtaggcactacatttttttg-ctttcccaccacctcactgactgctttatcgtaatctcttttactaaatttttcc----tattttacctctacaatttgggatcccacctggtatagtacttaacttcctcctgttttctgtctagtaattccttatatgatctcaaccagcttgggttttaaataGACacaagcaaaattccaattttggttacca s panTro5.chr5 20326693 617 + 181907262 cattttccagagcgtatcagctgcagctgtataagcaggatcaggcagtaggtggggttatagagctcccaagagattatgttctttgtcttcagctgccagggcaggcagagaaagaccactaggtgggg-------------------------------acaaggataggcctgtctgatctcagagtctccttgggtgggccttgctgcagctgctgtgggggatgggagtg-tggttctcagcccaatggaggtatgttcacagggggattatggctgcctttgctgagtcacacaggtcaccagggaagtaggggaaagacggcagtcacaggcctcacccagttcccacATAGCCTGCAGTCCACttaggagcatgctgaccaaagtcaagagtttccccattctcaaaacactacagaaatttgatttgtaggcactacattttcttg-ctttcccaccacctcactgactgctttatcgtaatctcttttactaaatttttcc----tattttacctctacaatttgggatcccacctggtatagtacttaacttcctcctgttttctgtctagtaattccttatatgatctcaaccagcttgggttttaaataGACacaagcaaaattccaattttggttacca i panTro5.chr5 C 0 C 0 s panPan2.chr5 20338883 617 + 183735486 cattttccagagcgtatcagctgcagctgtataagcaggatcaggcagtaggtggggttatagagctcccaagagattatgttctttgtcttcagctgccagggcaggcagagaaagaccactaggtgggg-------------------------------acaaggataggcctgtctgatctcagagtctccttgggtgggccttgctgcagctgctgtgggggatgggagtg-tggttctcagcccaatggaggtatgttcacagggggattatggctgcctttgctgagtcacacaggtcaccagggaagtaggggaaagatggcagtcacaggcctcacccagttcccacATAGCCTGCAGTCCACttaggagcatgctgaccaaagtcaagagtttccccattctcaaaacactacagaaatttgatttgtaggcactacattttcttg-ctttcccaccacctcactgactgctttatcgtaatctcttttactaaatttttcc----tattttacctctacaatttgggatcccacctggtatagtacttaacttcctcctgttttctgtctagtaattccttatatgatctcaaccagcttgggttttaaataGACacaagcaaaattccaattttggttacca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4825544 616 - 13748885 cattttccagagcgtatcagctgcagctgtataagcaggatcaggcagtgggtggggttatagggctcccaagagattatgttctttgtcttcagctgccagggcaggcagagaaagaccactaggtgggg-------------------------------acaaggataggcctgtctgatctcagagtctccttgggtgggccttgctgcagctgctgtgggggatgggagtg-tggttctcagcccaatggaggtatgttcacagggggattatggctgcctttgctgagtcacacaggtcaccagggaagtgggggaaagacagcagtcacaggcctcacccagttcccacatagcctgcaGTCCACttaggagcatgctgaccaaagtcaagagtttccccattctcacaacactacagaaatttgatttgtaggcactacattttcttg-ctttcccaccacctcactgactgctttatcataatctcttttactaaatttttcc----tattttacctctacaatttgtgatcccacctggtatagtacttaacttcct-ctgttttctgtctagtaattccttatatgatctcaaccagcttgggttttaaataGACacaagcaaaattccagttttggttacca i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87878926 617 - 180051392 cattttccagagtgtatcagctgcagctgtataggtaggataaggcagtgggtggggctatagagctcccaagagattatgtcctttgtcttcagcagctggggcaggtagagaaagactactaggtgggg-------------------------------ataaggataggcctgtctgatctcagagtctccttgggtgggccttggtgcagctgctgtgggggatgggggtg-tggttctcagcccaatggaggtatgttcacagggggattatggctgcctctgctgagtcacacaggtcaccagggaagtgggggaaagacggcggtcgcaggcctcacccagctcccacatagcctgcaGTCCACttaggagcattctgaccaaagtcaagagtttacccattctcaaaacactacagaaatttgatttctaggcactacattttcttg-ctttcccaccacctcactggctgctttatcataatctcttttactaaatttttcc----tattttacctctacaatttgggatcccacctggtgtagtccttaacttcctcctgttttctatctagtaattccttatatgatctcaaccagcttggattttaaataGACAGAAGCAAAATTTCaattttggttacca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87983327 617 - 181584905 cattttccagagtgtatcagctgtagctgtataggtaggatcaggcagtgggtggggctatagagctcccaagagattatgtcctttgtcttcagcagctggggcaggtagagaaagactactaggtgggg-------------------------------ataaggataggcctgtctgatctcagagtctccttgggtgggccttggtgcagctgctgtgggggatgggggtg-tggttctcagcccaatggaggtatgttcacagggggattatggctgcctctgctgagtcacacaggtcaccagagaagtgggggaaagacggcggtcgcaggcctcacccagctcccacATAGCCTGCAGTCCACttaggagcattctgaccaaagtcgagagtttacccattctcaaaacactacagaaatttgatttctaggcactacattttcttg-ctttcccaccacctcactggctgctttatcataatctcttttactaaatttttcc----tattttacctctacaatttgggatcccacctggtatagtccttaacttcctcctgttttctatctagtaattccttacatgatctcaaccagcttggattttaaataGACAGAAGCAAAATTTCaattttggttacca i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1210753 615 - 8785636 cattttccagagtgtatcagctgcagctgtataggtaggatcaggcagtgggtagggctatagagctcccaagagattatgtcctttgtcttcagcagctggggcaggtagagaaagactactaggtgggg-------------------------------ataaggataggcctgtctgatctcagagtctccttgggtgggccttggtgcagctgctgtaggggatgggggtg-tggttctcagcccaatggaggtatgttcacagggagattatggctgcctctgctgagtcacacacgtcagcagggaagtgggggaaagacggcggtcgcaggcctcacccagctcccacatagcctgcaGTCCACttaggagcattctgaccaaagtcgagagtttacccattctcaaaacactacagaaatttgatttctaggcactacattttcttg-ctttcccaccacctcactggctgctttatcataatctcttttactaaatttttcc----tattttacctctacaatttgggatcccacctggtatagtccttaacttcctcctgttttctatctagtaattccttatatgatctcaaccagcttggattttaaataGACAGAAGCAAAATTTCaattttggttac-- i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1944057 617 - 91010382 cattttccagagtgtatcagctgcagctgtataagtaggatcaggcagtgggtggggctatagagctcccaagagattatgtcctttgtcttcagcagctggggcaggtagagaaagactactaggtgggg-------------------------------ataaggataggcctgtctgatctcagagtctccttgggtgggccttggtgcagctgctgtgggggatgggggtg-tggttctcagcccaatggaggtatgttcacaaggcgattatggctgcctctgctgagtcacacaggtcaccagggaagtgggggaaagacggcggtcgcaggcctcacccagctcccacAGAGCGTGCAGTTCACttaggagcattctgaccaaagtcgagagtttacccattctcaaaacactacagaaatttgatttctaggcactacattttcttg-ctttcccagcacctcactggctgctttatcataatctcttttactaaatttttcc----tattttatctctacaatttgggatcccacctggtatagtccttaacttcctcctgttttctatctagtaattccttatatgatctcaaccagtttggattttaaataGACACAAGCAAAATTTCaattttggttacca i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7765271 616 - 21726897 cattttccagagtgtatcagctgcagctgtataagtaggatcaggcagtgggtgaggccatagacctcccaagagattatgtcatttgtcttcagcagctggggcaggtagagaaagactactaggtggag-------------------------------ataaggataggcctgtctgatctcagagtctccttgggtgggccttggtgcagctgctgtgggggatgggggtg-tggttctcagcccaatggaggtatgttcacagggggattatggctgcctctgctgagtcacacaggtcaccagggaagtggggcaaagacggcggtcgcaggcctca-ccagctcccacacagcctgcaGTCCACttaggagcattctgaccaaagtcgagagtttacccattctcaaaacactacagaaatttgatttctaggcactacattttcttg-ctttcccaccacctcactggctgctttatcataatctcttttactaaatttttcc----tattttacctctacaatttgggatcccacctggtatagtccttaacttcctcttgttttctatctagtaattccttatatgatctcaaccagtttggattttaaataGACACAAGCAAAATTTCaattttggttacca i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112582060 633 + 204313951 cattttccagagcttatcagctgcagctgtataggcaagagcaggcagttggtggggctatagagctcccaagagattatgtcctttgtcctcaataaccagggcaggtagagaaagaccaccaggtgaggacaaggataataggcatgtctgatctcatgcacaaggataggcatgtctga------------------tgggccttgctgcaggtgctgtgggggatgggagtg-tggttctcaggccaacagatgtatgttcacagagggattatggctgcccctactgagacataccagtcaccagggaagtgggggaaagattgcagtcacaggcctcacccagctcccacacaGCCTGCAGTCCACttaggagcattctgaccaaagtcgagagtttccccattctcaaaacactacagaactttgatttctaggcactacatttttttggtttttctacctcccaactgactgctttttcataatctcctttactaattttttactttctatttcacctctacaatttgagatctcacctggtataatccttaatttcctcctgttttctatctagtaattccttatgtgatatcaaccaatttgggttttaaataGACACAAGCAATAttccagttttggttac-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45033389 603 + 71252344 cattttccagagcttatcagctgtagctgtataggcaagagcaggcagtgggtggggctatagagctcccaagagattatgtcctttgtcttcaacaaccagggcaggtagagaaagaccaccaagtgggg-------------------------------acaaggataggcatgtctga------------------tggaccttgctgcaggtgctgtggggggtgggggggttggttctcaggccatcggatgtatgttcacagggggattatggctgcctctactgagacataccagtcacaagagaagtgggggaaagattgccgtcacaggcctcacccagctcccacacagccTACAGTCCACCTaggagcattctgaccaaagtcgagaatttccccattctgaaaacactacagaactttgatttctaggcactacatttttttgttttttccacctcccaactgactgctttttcataatctcctttactaattttttcctctttatttcacctctacagtttggaatcttacctggtatagtccttaacttcctcctgttttctatctagtaattccttatatgatcttaaccagtttgggttttaaataGACATAAGCAAAAttccagtgttagttac-- i saiBol1.JH378106 I 4 C 0 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1344222 8869 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e nomLeu3.chr2 53855535 100 - 163208435 I a score=27017.000000 s hg38.chr5_GL383530v1_alt 93346 6 + 101241 gtcagt s panTro5.chr5 20327310 6 + 181907262 gtcagt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20339500 6 + 183735486 gtcagt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4826160 6 - 13748885 gtcagt i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87879543 6 - 180051392 gtcagt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87983944 6 - 181584905 gtcagt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1211368 4 - 8785636 --cagt i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1944674 6 - 91010382 gtcagt i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7765887 6 - 21726897 gtcagt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112582693 4 + 204313951 --cagt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45033992 4 + 71252344 --cagt i saiBol1.JH378106 C 0 C 0 s otoGar3.GL873536 1353091 6 - 29863360 gccact i otoGar3.GL873536 I 8869 C 0 e canFam3.chr3 14345007 3729 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e nomLeu3.chr2 53855535 100 - 163208435 I a score=867424.000000 s hg38.chr5_GL383530v1_alt 93352 159 + 101241 gtacattaactgtg-gtaattgcaata-aagcacaa----------ctgctacctcttcagtccacaaatcactatgcaaataacgaatgtgcaacttg-------atcagtgaccaatcacgttactc---------ctttcactgcatgtctgttattcagctcatgcacagatggcaaagcata s panTro5.chr5 20327316 159 + 181907262 gtacattaactgtg-gtaattgcaata-aagcacaa----------ctgctacctcttcagtccacaaatcactatgcaaataacaaatgtgcaacttg-------atcagtgaccaatcacgttactc---------ctttcactgcatgtctgttattcagctcatgcacagatggcaaagcata i panTro5.chr5 C 0 C 0 s panPan2.chr5 20339506 159 + 183735486 gtacattaactgtg-gtaattgcaata-aagcacaa----------ctgctacctcttcagtccacaaatcactatgcaaataacaaatgtgcaacttg-------atcagtgaccaatcacgttactc---------ctttcactgcatgtctgttattcagctcatgcacagatggcaaagcata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4826166 158 - 13748885 gtacattaactgtg-gtaattgcaata-aagcacaa----------ctgctacctcttcagtccacaaatcactatgcaaataacaaatgtgcaacttg-------atcagtgaccaatca-gttactc---------ctttcactgcatgtctgttattcagctcatgcacagatggcaaagcata i gorGor5.CYUI01014999v1 C 0 C 0 s rheMac8.chr6 87879549 159 - 180051392 gtacattagctgtg-gtaattgcaata-aagcacag----------ttgctacctcttcagtccacaaatcactatgcaaataacaaatatggaacttg-------atcagtgaccaatcatgttactc---------ctttcactgcatgtctgttattcagctcatgcacagatggtaaagcata i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87983950 159 - 181584905 gtacattagctgtg-gtaattgcaata-aagcacag----------ctgctacctcttcagtccacaaatcactatgcaaataacaaatatggaacttg-------atcagtgaccaatcatgttactc---------ctttcactgcatgtctgttattcagctcatgcacagatggtaaagcata i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1211372 159 - 8785636 gtacattagctgtg-gtaattgcaata-aagcacag----------ttgctacctcttcagtccacaaatcactatgcaaataacaaatatggaacttg-------atcagtgaccaatcatgttactc---------ctttcactgcgtgtctgctattcagctcatgcacagatggtaaagcata i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1944680 159 - 91010382 gtacattagctgtg-gtaattgcaata-aagcacag----------ttgctacctcttcagtccacaaatcacgatgcaaataacaaatatgcaacttg-------atcagtgaccaatcacgttactc---------ctttcactgcatgtctgttattcagctcatgcacagatggtaaagcata i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7765893 159 - 21726897 gtacattagctgtg-gtaattgcaata-aagcacac----------ttgctacctcttcagtccacaaatcactatgcaaataacaaatatgcaacttg-------atcagtgaccaatcaggttactc---------ctttcactgcatgtctgttattcagctcatgcacagatggtaaagcatg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112582697 169 + 204313951 gtacattaactctg-gtaactgcaata-aagcaaaagctttgctgcttgctacctcttcagtccacaaatcattatgcaaataacaaatgtgcaacttg-------atcagtgaccaatcacgttgctc---------ctttcactgcatgtctgttattcagcttatgcacagatggcaaagcata i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45033996 169 + 71252344 gtacattaactgtg-gtaattgcaata-aagcacaagctttgctgcttgctacctcttcagtccacaaatcactatgcaaataacaaatgtgcaacttg-------atcagtgaccaatcacgttgctc---------ctttcactgcgtgtctgttattcagcttatgcacagacggcaaagcata i saiBol1.JH378106 C 0 C 0 s otoGar3.GL873536 1353097 175 - 29863360 gtgcgttatctgtgagtagctgccgtc-cagcacag--gctgctgcttgctgcctcttgaggccacacaccgctatgcagacaatgtgtgtgcaaattatcatgatatcagaagagagcaacagcactc---------ttttcattgcacatctgctactcagcacaggcacaggtgacaaagcata i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14348736 156 + 91889043 gtatattaactgtg----actgaagtattaactttg----------ctgctgcccctccagtacacaaattgtgatgtaattaaccta---------tg-------agcagtgac-agtcctatcacttaaagtgtagtagtgactgtgaatctgttatacagctcacacacagtctgcaaagcata i canFam3.chr3 I 3729 C 0 e micMur3.chr12 84850403 9272 + 108143057 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e nomLeu3.chr2 53855535 100 - 163208435 I a score=1078497.000000 s hg38.chr5_GL383530v1_alt 93511 180 + 101241 tagctatgtttcttgtcgctcagtgataTAACTGGATAATAGAGCTTTTAAGATACTACTCTTAATGCTTAATGTTTTTTTAATGCTCCAGATAACC----GTGATTCTCTTG-GGGACTTAAATGAAAATGTGAATA-TTTGCtttcta--------------ccat---------------taaacataacttcattaatccagccaatggat s panTro5.chr5 20327475 169 + 181907262 tagttatgtttcttgtcgctcagtgataTAACTGGataatagagcttttaagatactactct-----------gtttttttaatgctccagataacc----ctgattctcttg-gggacttaaatgaaaatgtgaata-tttgctttcta--------------ccat---------------taaacataacttcattaatccagccaatggat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20339665 169 + 183735486 tagttatgtttcttgtcgctcagtgatataaccGGGTAATAGAGcttttaagatactactct-----------gtttttttaatgctccagataacc----ctgattctcttg-gggacttaaatgaaaatgtgaata-tttgctttcta--------------ccat---------------taaacataacttcattaatccagccaatggat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4826324 169 - 13748885 tagttatgtttcttgtcgctcagtgataTAACTGGataatagagcttttaagatactactct-----------gtttttttaatgctccagataacc----ctgattctcttg-gggacttaaatgaaaatgtgaata-tttgctttcta--------------ccat---------------taaacataacttcattaatccagccaatggat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53855635 169 - 163208435 TAGTTATGTTTCTTGTCTCTCAGTGATATAACTGGACAATAGAGCTTTTAAGGTACTACTCT-----------GTTTTTTTAATGCTCCACATAACC----CTGATTCTCTTG-GGGACTTaaatgaaaatgtgagta-tttgctttcta--------------ccat---------------taaacataacttcattaatccagccaatggat i nomLeu3.chr2 I 100 C 0 s rheMac8.chr6 87879708 169 - 180051392 tagttatgtttcttgtccctcagtgataTAACTGGataatagagcttttaagatactactct-----------attgttttaatactccagatcacc----ctgattctcttg-gggacttaaatgaaaatgtgaaca-tttgctttcca--------------ccat---------------taaacatagcttcgttaatccaaccaatggat i rheMac8.chr6 C 0 I 319 s macFas5.chr6 87984109 169 - 181584905 tagttatgtttcttgtcgctcagtgataTAACTggataatagagcttttaagatactactct-----------attgttttaatactccagatcacc----ctgattctcttg-gggacttaaatgaaaatgtgaaca-tttgctttcca--------------ccat---------------taaacatagcttcattaatccaaccaatggat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1211531 169 - 8785636 tagttatgtttcttgtcgctcagtgataTAACTGGataatagagcttttaagatactactct-----------attgttttaatactccagatcacc----ctgattctcttg-gggacttaaatgaaaatgtgaaca-tttgctttcca--------------ccat---------------taaacatagcttcattaatccaaccaatggat i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1944839 169 - 91010382 tagttatgtttcttgtctctcagtgataTAACTgaataatagagcttttaagatactacttt-----------attgttttaatactccagatcacc----ctgattctcttg-gggacttaaatgaaaatgtgaaca-tttgctttcca--------------ccat---------------taaacatagcttcattaatccagccaatggat i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7766052 198 - 21726897 tagttatgtttcttgtctctcagtgataaaACTGGataatagagcttttaagatactactct-----------attgttttaatactccagatcacc----ctgattctcttg-gagacttaaatgaaaatgtgaaca-tttgctttccacataaacatagcttccatagttatgtttccacataaacatagcttcattaatccagccaatggat i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112582866 168 + 204313951 tagtcatgtttcttgtctctcagtgataTAACTGTATAATTGAGCTTTTAAGATACTCCTCT-----------GTTGTTTTAATGCTCCAGATCACC----GTGATTCTCTTG-GGGACTTAAATGAAAAAGTAAACA-TTTGCTTTCTA--------------CCAT---------------TAAACATAACTTCATT-ATCCAGCCAATGGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45034165 169 + 71252344 tagttatgtttcttgtctcttagtgataTAACTGTATAATTGAGCTTTTAAGATACTACTCT-----------GTTGTTTTAATGTTCCAGATCACC----GTGACGCTCTTG-GGGACTTAAATGAAAATGTGAACA-TTTGCTTTCTA--------------CCAT---------------TAAACATAACTTCATTAATCCAGCCAATGGAT i saiBol1.JH378106 C 0 C 0 s otoGar3.GL873536 1353272 169 - 29863360 ----tgtgtattccctc-ctCAGGGAGGGAACCACATCCTTGGGCTCTTTAAGCTCTATTCC-----------ATTGTTTTAATGGTCCAGACCATTGTGATTGATTTTTTGG-GGGACTTAAATGAAAATGCTAGCATTTTTTTTTTTA--------------TCAT---------------CAAGTGCAACTTACTTAATCTAGTCAACGGAC i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14348892 166 + 91889043 --gaggtgttgcttatttctcagtgatatacccGTATACTTGGGTTTTAAAAGCACTATTCT-----------GATG-AATAATGCTCCAGATGACC----TTGATCCTCTTGTGGGACTTGAAT-AAAATGTGAAAA-TCTGCTTCTTA--------------CCAT---------------CAAGCACAACTTCATTAATTTGGCCAGTGGAC i canFam3.chr3 C 0 C 0 e micMur3.chr12 84850403 9272 + 108143057 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I a score=509783.000000 s hg38.chr5_GL383530v1_alt 93691 77 + 101241 catagaattatttcaacttctaa--------atcttaGATGGACTTTCAGACAGAGTATTAAACCGGAGATCATACAATTTATCT----- s panTro5.chr5 20327644 77 + 181907262 catagaattatttcaacttctaa--------atcttagatggactttcagacagagtattaaaccggagatcatacaatttatct----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20339834 77 + 183735486 catagaattatttcaacttctaa--------atcttagatggactttcagacagagtattaaaccggagatcatacaatttatct----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4826493 77 - 13748885 catagaattatttcaacttctaa--------atcttagatggactttcagacagagtattaaaccggagatcatacaatttatct----- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53855804 77 - 163208435 catggaattattccaacttctaa--------atcttagatggactttcagacagagtattgAACCGGAGATCATACAATTTATCT----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87880196 77 - 180051392 catagaattatttcaacttctaa--------gtcttagatggactttcagacagagtattgaaccggagatcatacaatttatct----- i rheMac8.chr6 I 319 C 0 s macFas5.chr6 87984278 77 - 181584905 catagaattatttcaacttctaa--------gtcttaGATGGACTTTCAGACAGAGTATTGAACCGGAGATCATACAATTTATCT----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1211700 77 - 8785636 catagaattatttcaacttctaa--------gtcttagatggactttcagacagagtattgaaccggagatcatacaatttatct----- i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1945008 72 - 91010382 catagaattattttaacttctaa--------gtcttaGATGGACTTTCAGACAGAGTATTGAACTGGAGATCATACAA-----AT----- i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7766250 77 - 21726897 catagaattatttcaacttctaa--------gtcttagatggactttcagacagagtattgaaccggagatcatacaatttatct----- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112583034 77 + 204313951 CATAGTATTATATTATTTTCTAA--------ATTTTAGATGAACTTTCAGACAGAGTATTGAACCAGATATCATACAATTTATCT----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45034334 77 + 71252344 CATAGTATTATATTATTTTCTAA--------ATTTTAGATGAACTTTCAGATAGAGTATTGAACCAGAGATCATACAATTTATCT----- i saiBol1.JH378106 C 0 C 0 s otoGar3.GL873536 1353441 76 - 29863360 CATAGAATTATTTCAACTTCTAA--------ATTTTAAATGTATTTTTAGATAGAGTACTGAATT-GATATCATGCAAtttcttt----- i otoGar3.GL873536 C 0 I 2743 s canFam3.chr3 14349058 89 + 91889043 CACAGAATTATTTCAGTCTTCAAAACATCTTATCTTAAATGGACTTTCAGACAGGGTATTGAATT-AAGATCACGCTTTTTTTTTTAACC i canFam3.chr3 C 0 C 0 e micMur3.chr12 84850403 9272 + 108143057 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I a score=89029.000000 s hg38.chr5_GL383530v1_alt 93768 13 + 101241 GAGTTTTGTAAAA s panTro5.chr5 20327721 13 + 181907262 gagttttgtaaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20339911 13 + 183735486 gagttttgtaaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4826570 13 - 13748885 gagttttgtaaaa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53855881 13 - 163208435 GAGTTTTGTAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87880273 13 - 180051392 gagttttgtaaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87984355 13 - 181584905 GAGTTTTGTAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1211777 13 - 8785636 gagttttgtaaaa i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1945080 13 - 91010382 GAGTTTTGTAAAA i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7766327 13 - 21726897 gagttttataaaa i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112583111 13 + 204313951 GAGTTTTGTAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45034411 13 + 71252344 GAGTTTTGTAAAA i saiBol1.JH378106 C 0 C 0 s canFam3.chr3 14349147 13 + 91889043 GAGTTTTAGAAAA i canFam3.chr3 C 0 I 2074 e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1353517 2743 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I a score=918054.000000 s hg38.chr5_GL383530v1_alt 93781 191 + 101241 GCACATTGCCTTTGGAGtcttccctacagctctg-ccta-gggcccaactcatcagattttggactcattaaatctccacaatcacaggagccaattccttaaaataaatctctttctctctgtgtgtatGTGGGtacatgtaaatataaa------tatataaatatagatataaaAAtaaatatatatttctatgta s panTro5.chr5 20327734 191 + 181907262 GCACATTGCCTTTGGAGtcttccctacagctctg-ccta-gggcccaactcatcagattttggactcattaaatctccacaatcacatgagccaattccttaaaataaatctctttctctgtgtgtgtatGTGGGtacatgtaaatataaa------tatataaatatagatataaaAAtaaatatatatttctatgta i panTro5.chr5 C 0 C 0 s panPan2.chr5 20339924 191 + 183735486 GCACATTGCCTTTGGAGtcttccctatagctctg-ccta-gggcccaactcatcagattttggactcattaaatctccacaatcacatgagccaattccttaaaataaatctctttctctctgtgtgtatGTGGGtacatgtaaatataaa------tatataaatatagatataaaAAtaaatatatatttctatgta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4826583 191 - 13748885 GCACATTGCCTTTGGAGtcttccctacagctctg-ccta-gggcccaactcatcagattttggactcattaaatctccacaatcacatgagccaattccttaaaataagtctctttctctgtgtgtgtatGTGGGtacatgtaaatataaa------tatataaatatagatataaaAAtaaatatatatttctatgta i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53855894 198 - 163208435 GCACATTGCCTTTGGAGtcttccctacagctttgcccta-gggcccaactcatcagattttggactcattaaatctccacaatcacatgagccaattccttaaaataaatctctttctctgtgtgtgtatGTGGGtacatgtaaatataaatatatttatataaatatagatataaaaataaatatatatttctatgta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87880286 178 - 180051392 GCACATTGCCTTTGGAGTCTTCCttgcagctctg-ccta-gggcccaactcatcagattttagactcataaaatctccacaatcacatgagccaattcct-----taaacctctttctctttgtgtgtatGTGTGtacatataaatataaa--------------tatagatataaaaataaataCATATTTCtatgta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87984368 178 - 181584905 GCACATTGCCTTTGGAGTCTTCCttgcagctctg-ccta-gggcccaagtcatcagattttagactcataaaatctccacaatcacatgagccaattcct-----taaacctctttctCTTTGTGTGTATGTGTGtacatataaatataaa--------------tatagatataaaaataaataCATATttctatgta i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1211790 178 - 8785636 GCACATTGCCTTTGGAGTCTTCCtttcagctctg-ccta-gggcccaactcatcagattttagactcataaaatctccacaatcacatgagccaattcct-----taaacctctttctctttgtgtgtatGTGTGtacatataaatataaa--------------tatagatataaaaataaataCATATttctatgta i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1945093 183 - 91010382 GCAGATTGCCTTTGGAGTCTTCCttgcagctctg-ccta-gggcccaactcatcagattttagactcataaaatcaccacaatcacatgagacaattccttaaaataaatctctttctctttgtgtgtatGTGtatacatataaatataaa--------------tatagatataaaaataaataCATATttctatgta i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7766340 183 - 21726897 GCACATTGCCTTGGGAATCTTCCttgcagctctg-ccta-gggcccaactcatcagattttagactcataaaatctccacaatcacataagccaattccttaaaataaatctctttctctttgtgtgtatGTGTGTACATATAAATATAAA--------------TATAGATATAAAAATAAATACATATTTCTGTGTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112583124 182 + 204313951 GCACATTGCCTTTGGAGtcttccctgcaactctg-cctaggggcgcaactcatcagattttggactcattaaatctccacaatcacatgaaccaattccttaaaaaagataattttc------tGTGCGTGTGTGTACATATAAATATAAA------TGTA----TATTCATATAAATACACATTTATAGATTTATGTA i calJac3.chr2 C 0 I 184 s saiBol1.JH378106 45034424 181 + 71252344 GCACATAGCCTTTGGAGtcttccctgcaactctg-ccta-gggcccaactcatcagattttggactcattaaatcttcacaatcacatgaaccaattccttaaaataaatcttttcc------tgtatgtatgtgtacatATAAATATAAA------TGTA----TATTCATATAAATACAAATTTATAGATTtatgta i saiBol1.JH378106 C 0 I 2 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1353517 2743 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I a score=52826.000000 s hg38.chr5_GL383530v1_alt 93972 13 + 101241 tacacaccctaat s panTro5.chr5 20327925 13 + 181907262 tacacaccctaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340115 13 + 183735486 tacacaccctaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4826774 13 - 13748885 tacacaccctaat i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856092 13 - 163208435 tacacatcctaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87880464 13 - 180051392 tatatatcctaat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87984546 13 - 181584905 tatatatcctaat i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1211968 13 - 8785636 tatatatcctaat i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1945276 13 - 91010382 tatatatcctaat i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7766523 13 - 21726897 TACATATCCTAAT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112583490 13 + 204313951 tacatatcctaat i calJac3.chr2 I 184 C 0 s saiBol1.JH378106 45034607 5 + 71252344 tacat-------- i saiBol1.JH378106 I 2 C 0 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1353517 2743 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I a score=289692.000000 s hg38.chr5_GL383530v1_alt 93985 59 + 101241 tctgtttctccggataaccctaaTATATA-TTATGTGTATATATTATGTATGTGTATTTC s panTro5.chr5 20327938 59 + 181907262 tctgtttctccggataaccctaaTATATA-TTATGTGTATATATTATGTATGTGTATTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340128 59 + 183735486 tctgtttctccggataaccctaaTATATA-TTATGTGTATATATTATGTATGTGTATTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4826787 59 - 13748885 tctgtttctccggataaccctaaTATATA-TTATGTGTATATATTATGTATGTGTATTTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856105 59 - 163208435 tctgtttctctggataaccctaatataTA-TTATGTGTATATATTATGTATGTGTACTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87880477 59 - 180051392 tctgtttctctggataaccctaatataca-CTATGTGTATGTATTATGTATATGCATTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87984559 59 - 181584905 tctgtttctctggataaccctaatataTA-Ctatgtgtatgtattatgtatatgcatttc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1211981 59 - 8785636 tctgtttctctggataaccctaatataTA-Ctatgtgtatgtattatgtatatgcatttc i macNem1.NW_012011400v1 C 0 C 0 s chlSab2.chr4 1945289 59 - 91010382 tctgtttctctggataaccctaatataTA-Ctatgtgtatgtattatgtatatgcatttc i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7766536 59 - 21726897 TCTGTTTTTCTGGATAACCCTATTATATA-CTATGTGTATGTATTATGTATATGTATTTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112583503 59 + 204313951 tctgtttctctggataaccctaataaata-TTATATGTTTATATTATATAGTTGTATTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45034612 39 + 71252344 --------------------ttataaatatttttatatctata-tataaatatgcatttc i saiBol1.JH378106 C 0 I 248 s otoGar3.GL873536 1356260 58 - 29863360 TCTATTTCTCAGGAGGACCCGAGCCAGCA-C-ATGGCTGTGTGTTATGTATATGTATTGT i otoGar3.GL873536 I 2743 C 0 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I a score=39428.000000 s hg38.chr5_GL383530v1_alt 94044 8 + 101241 ATGTCTCT s panTro5.chr5 20327997 8 + 181907262 ATGTCTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340187 8 + 183735486 ATGTCTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4826846 8 - 13748885 ATGTCTCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856164 8 - 163208435 ATTTCTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87880536 8 - 180051392 ATCTCTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87984618 8 - 181584905 atctctct i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1212040 8 - 8785636 atctctct i macNem1.NW_012011400v1 C 0 I 47 s chlSab2.chr4 1945348 8 - 91010382 atctctct i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7766595 8 - 21726897 ATCTCTCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112583562 8 + 204313951 ATTTCTCT i calJac3.chr2 C 0 C 0 s otoGar3.GL873536 1356318 8 - 29863360 ACTTCTCT i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45034651 248 + 71252344 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I a score=10505.000000 s hg38.chr5_GL383530v1_alt 94052 2 + 101241 CT s panTro5.chr5 20328005 2 + 181907262 CT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340195 2 + 183735486 CT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4826854 2 - 13748885 CT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856172 2 - 163208435 CT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87880544 2 - 180051392 CT i rheMac8.chr6 C 0 I 2065 s macFas5.chr6 87984626 2 - 181584905 ct i macFas5.chr6 C 0 C 0 s chlSab2.chr4 1945356 2 - 91010382 ct i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7766603 2 - 21726897 CT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112583570 2 + 204313951 CT i calJac3.chr2 C 0 C 0 s otoGar3.GL873536 1356326 2 - 29863360 CT i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45034651 248 + 71252344 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e macNem1.NW_012011400v1 1212048 47 - 8785636 I a score=4455.000000 s hg38.chr5_GL383530v1_alt 94054 2 + 101241 C--T s panTro5.chr5 20328007 2 + 181907262 C--T i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340197 2 + 183735486 C--T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4826856 2 - 13748885 C--T i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856174 4 - 163208435 CTTT i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87984628 2 - 181584905 c--t i macFas5.chr6 C 0 I 803 s chlSab2.chr4 1945358 2 - 91010382 c--t i chlSab2.chr4 C 0 C 0 s colAng1.NW_012115488v1 7766605 2 - 21726897 C--T i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112583572 2 + 204313951 C--t i calJac3.chr2 C 0 I 65 s otoGar3.GL873536 1356328 2 - 29863360 C--T i otoGar3.GL873536 C 0 I 247 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45034651 248 + 71252344 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e macNem1.NW_012011400v1 1212048 47 - 8785636 I e rheMac8.chr6 87880546 2065 - 180051392 I a score=11247.000000 s hg38.chr5_GL383530v1_alt 94056 6 + 101241 CTCTCT s panTro5.chr5 20328009 6 + 181907262 CTCTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340199 6 + 183735486 CTCTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4826858 6 - 13748885 CTCTCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856178 6 - 163208435 CTCTCT i nomLeu3.chr2 C 0 C 0 s chlSab2.chr4 1945360 6 - 91010382 ttctct i chlSab2.chr4 C 0 I 44 s colAng1.NW_012115488v1 7766607 6 - 21726897 CTCTCT i colAng1.NW_012115488v1 C 0 I 37 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1356330 247 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45034651 248 + 71252344 I e calJac3.chr2 112583574 65 + 204313951 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e macNem1.NW_012011400v1 1212048 47 - 8785636 I e macFas5.chr6 87984630 803 - 181584905 I e rheMac8.chr6 87880546 2065 - 180051392 I a score=5550.000000 s hg38.chr5_GL383530v1_alt 94062 6 + 101241 Caaatt s panTro5.chr5 20328015 6 + 181907262 Caaatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340205 6 + 183735486 Caaatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4826864 6 - 13748885 Caaatt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856184 6 - 163208435 Caaatt i nomLeu3.chr2 C 0 C 0 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1356330 247 - 29863360 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45034651 248 + 71252344 I e calJac3.chr2 112583574 65 + 204313951 I e colAng1.NW_012115488v1 7766613 37 - 21726897 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e chlSab2.chr4 1945366 44 - 91010382 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e macNem1.NW_012011400v1 1212048 47 - 8785636 I e macFas5.chr6 87984630 803 - 181584905 I e rheMac8.chr6 87880546 2065 - 180051392 I a score=163243.000000 s hg38.chr5_GL383530v1_alt 94068 146 + 101241 agctgggcatggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggctgagcttgtagtgagcggagattgcaccactgcactctagcctgggcgacagagcaagactctgtct s panTro5.chr5 20328021 144 + 181907262 agctgggcatggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggctgagcttgtagtgagcagagattgcaccactgcactctagcctgggcgacagagcaagact--gtct i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340211 144 + 183735486 agctgggcatggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggctgagcttgtagtgagcagagattgcaccactgcactctagcctgggcgacagagcaagact--gtct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4826870 145 - 13748885 agctgggcatggtggcaggc-cctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggctgagcttgtagtgagcggagattgcaccactgcactctagcctgggcgacagagcaagactccgtct i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856190 146 - 163208435 agctgggcatagtggcaggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggctgagcttgtagtgagccgagattgcaccactgcactcccgcctgggcgacatagcaagactccgtct i nomLeu3.chr2 C 0 C 0 s otoGar3.GL873536 1356577 140 - 29863360 aactgggcattgtggcaggtgcct---gtcccagctacttgggaggctggggcaagagaatcgcttaagcccaagagttggaggttgctgtgagctgtga---ccccatggcactctacccagggtgacagcttgagactctgtct i otoGar3.GL873536 I 247 C 0 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45034651 248 + 71252344 I e calJac3.chr2 112583574 65 + 204313951 I e colAng1.NW_012115488v1 7766613 37 - 21726897 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e chlSab2.chr4 1945366 44 - 91010382 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e macNem1.NW_012011400v1 1212048 47 - 8785636 I e macFas5.chr6 87984630 803 - 181584905 I e rheMac8.chr6 87880546 2065 - 180051392 I a score=7230.000000 s hg38.chr5_GL383530v1_alt 94214 10 + 101241 c---aaaaaaaaa s panTro5.chr5 20328165 10 + 181907262 c---aaaaaaaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340355 10 + 183735486 c---aaaaaaaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4827015 10 - 13748885 c---aaaaaaaaa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856336 13 - 163208435 caaaaaaaaaaaa i nomLeu3.chr2 C 0 C 0 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1356717 0 - 29863360 C e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e saiBol1.JH378106 45034651 248 + 71252344 I e calJac3.chr2 112583574 65 + 204313951 I e colAng1.NW_012115488v1 7766613 37 - 21726897 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e chlSab2.chr4 1945366 44 - 91010382 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e macNem1.NW_012011400v1 1212048 47 - 8785636 I e macFas5.chr6 87984630 803 - 181584905 I e rheMac8.chr6 87880546 2065 - 180051392 I a score=1365.000000 s hg38.chr5_GL383530v1_alt 94224 1 + 101241 a s panTro5.chr5 20328175 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340365 1 + 183735486 a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4827025 1 - 13748885 a i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856349 1 - 163208435 a i nomLeu3.chr2 C 0 C 0 s saiBol1.JH378106 45034899 1 + 71252344 a i saiBol1.JH378106 I 248 C 0 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1356717 0 - 29863360 C e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e calJac3.chr2 112583574 65 + 204313951 I e colAng1.NW_012115488v1 7766613 37 - 21726897 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e chlSab2.chr4 1945366 44 - 91010382 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e macNem1.NW_012011400v1 1212048 47 - 8785636 I e macFas5.chr6 87984630 803 - 181584905 I e rheMac8.chr6 87880546 2065 - 180051392 I a score=19740.000000 s hg38.chr5_GL383530v1_alt 94225 14 + 101241 tgtaggtatatata s panTro5.chr5 20328176 14 + 181907262 TGTAGGTATATATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340366 14 + 183735486 TGTAGGTATATATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4827026 14 - 13748885 TGTAGGTATATATA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856350 14 - 163208435 TGTAGGTATTTATA i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87985433 14 - 181584905 tatatatatatgta i macFas5.chr6 I 803 I 6 s saiBol1.JH378106 45034900 14 + 71252344 tatacatatgtata i saiBol1.JH378106 C 0 I 14 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1356717 0 - 29863360 C e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e calJac3.chr2 112583574 65 + 204313951 I e colAng1.NW_012115488v1 7766613 37 - 21726897 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e chlSab2.chr4 1945366 44 - 91010382 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e macNem1.NW_012011400v1 1212048 47 - 8785636 I e rheMac8.chr6 87880546 2065 - 180051392 I a score=12574.000000 s hg38.chr5_GL383530v1_alt 94239 8 + 101241 tattttta s panTro5.chr5 20328190 8 + 181907262 TAttttta i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340380 8 + 183735486 TAttttta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4827040 8 - 13748885 ttttttta i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856364 8 - 163208435 GAttttta i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87985453 8 - 181584905 tatttttt i macFas5.chr6 I 6 C 0 s macNem1.NW_012011400v1 1212095 8 - 8785636 tatttttt i macNem1.NW_012011400v1 I 47 C 0 s calJac3.chr2 112583639 4 + 204313951 tatt---- i calJac3.chr2 I 65 C 0 s saiBol1.JH378106 45034928 8 + 71252344 TATTTTTT i saiBol1.JH378106 I 14 I 5 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1356717 0 - 29863360 C e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e colAng1.NW_012115488v1 7766613 37 - 21726897 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e chlSab2.chr4 1945366 44 - 91010382 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e rheMac8.chr6 87880546 2065 - 180051392 I a score=22880.000000 s hg38.chr5_GL383530v1_alt 94247 9 + 101241 ttttttata s panTro5.chr5 20328198 9 + 181907262 ttttttata i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340388 9 + 183735486 ttttttata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4827048 9 - 13748885 ttttttata i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856372 9 - 163208435 ttttttata i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87985461 9 - 181584905 tttttaatt i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1212103 9 - 8785636 tttttaatt i macNem1.NW_012011400v1 C 0 C 0 s colAng1.NW_012115488v1 7766650 9 - 21726897 tttttaatg i colAng1.NW_012115488v1 I 37 C 0 s calJac3.chr2 112583643 9 + 204313951 tttgttttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45034941 9 + 71252344 ttttttatt i saiBol1.JH378106 I 5 C 0 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1356717 0 - 29863360 C e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e manLeu1.NW_012103732v1 2057234 7621 + 5179401 I e chlSab2.chr4 1945366 44 - 91010382 I e cerAty1.NW_012002401v1 1668156 7614 + 27333823 I e rheMac8.chr6 87880546 2065 - 180051392 I a score=172283.000000 s hg38.chr5_GL383530v1_alt 94256 27 + 101241 tttgagacagtgtctcactctgttgcc s panTro5.chr5 20328207 27 + 181907262 tttgagacagagtctcactctgttgcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340397 27 + 183735486 tttgagacagagtctcactctgttgcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4827057 25 - 13748885 tttgag--agagtctcaccctgttgcc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856381 27 - 163208435 tttgagacagagtctcactctgttgcc i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87985470 27 - 181584905 tttgagacagagtctcactctgttgcc i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1212112 27 - 8785636 tttgagacagagtctcactctgttgcc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1675770 27 + 27333823 tttgagacagagtctcactttattgtc i cerAty1.NW_012002401v1 I 7614 C 0 s chlSab2.chr4 1945410 27 - 91010382 tttgagacagagtctcactctgttgcc i chlSab2.chr4 I 44 C 0 s manLeu1.NW_012103732v1 2064855 27 + 5179401 tttgagacagagtctcactttgttgcc i manLeu1.NW_012103732v1 I 7621 C 0 s colAng1.NW_012115488v1 7766659 27 - 21726897 tttgagacagagtctcactctgttgcc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112583652 23 + 204313951 tttgagacag----tcactctgttgcc i calJac3.chr2 C 0 I 19 s saiBol1.JH378106 45034950 27 + 71252344 tttgagacagagtctcactctgttgcc i saiBol1.JH378106 C 0 I 19 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1356717 0 - 29863360 C e aotNan1.NW_018506370v1 1453888 13149 - 15889662 I e cebCap1.NW_016107830v1 378165 17077 - 1393929 I e rheMac8.chr6 87880546 2065 - 180051392 I a score=165148.000000 s hg38.chr5_GL383530v1_alt 94283 18 + 101241 caatcttggcttactgca s panTro5.chr5 20328234 18 + 181907262 caatcttggcttactgca i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340424 18 + 183735486 caatcttggcttactgca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4827082 18 - 13748885 caatcttggcttactgca i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856408 18 - 163208435 caatcttggcttattgaa i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 87985497 18 - 181584905 caatcttggcttactgta i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1212139 18 - 8785636 caatcttggcttactgca i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1675797 18 + 27333823 caatcttagcttactgca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1945437 18 - 91010382 caatcttggcttactgca i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2064882 18 + 5179401 caatcttggcttactgca i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7766686 18 - 21726897 caatcttggcttactgca i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112583694 18 + 204313951 caatcttggcttactgta i calJac3.chr2 I 19 C 0 s saiBol1.JH378106 45034996 18 + 71252344 caatcttggcttactgta i saiBol1.JH378106 I 19 C 0 s cebCap1.NW_016107830v1 395242 18 - 1393929 caatcttggcttaccgta i cebCap1.NW_016107830v1 I 17077 C 0 s aotNan1.NW_018506370v1 1467037 18 - 15889662 caatcttggcttactgta i aotNan1.NW_018506370v1 I 13149 C 0 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1356717 0 - 29863360 C e rheMac8.chr6 87880546 2065 - 180051392 I a score=4686531.000000 s hg38.chr5_GL383530v1_alt 94301 494 + 101241 gcct--------cgatctcccaggctcaggtgattctccccacttcagcctcctgattagctgggactacagacattacaggcatgcaccaccatgcccagctaattttttgtatttttagtagagacagggttttggcatgttggccaggctggtctcaaactcccggactcacaaaatcta-tcctccttggcctcccaaagtatgtatatgtatttttaaatgAAAACTTATTGGAG-AAAAAGACTTTATATCAATACTG----------------CTGtttttgttgttgttt----aaaacagagtctcactttgtcgcccaggctggagtgcagtagtacaatctcagctcactccaacctctgcctcctggattcaagcgattctcctgcctcagcctcctcagtagctgggattacaggtgtgtgccatcacacctggctaatttttgtatttttagtagagatggggcttcaccatggtggccaggctagtctcgaactcctcggctcaagtga s panTro5.chr5 20328252 494 + 181907262 gcct--------cgatctcccaggctgaggtgattctccccacttcagcctcctgattagctgggactacagacattacaggcatgcaccaccatgcccagctaattttttgtatttttagtagagacagggttttggcatgttggccaggctggtctcaaactcctggactcacaaaatcta-tcctccttggcctcccaaagtATGTATACGTATTTTTAAATGAAAACTTATTGGAG-AAAAAGACTTTATATCAATACTG----------------CTGtttttgttgttgttt----aaaacagagtctcactctgtcgcccaggctagagtgcagtagtacaatctcagctcactccaacctctgcctcctggattcaagcgattctcctgcctcagcctcctcagtagctgggattacaggtgtgtgccatcatacctggctaatttttgtatttttagtagagatggggcttcaccatggtggccaggctagtctcgaactcctcggctcaagtga i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340442 495 + 183735486 gcct--------cgatctcccaggctgaggtgattctccccacttcagcctcctgattagctgggactacagacattacaggcatgcaccaccatgcccagctaattttttgtatttttagtagagacagggttttggcatgttggccaggctggtctcaaactcctggactcacaaaatcta-tcctccttggcctcccaaagtATGTATACGTATTTTTAAATGAAAACTTATTGGAGAAAAAAGACTTTATATCAATACTG----------------CTGtttttgttgttgttt----aaaacagagtctcactctgtcgcccaggctagagtgcagtagtacaatctcagctcactccaacctctgcctcctggattcaagcgattctcctgcctcagcctcctcagtagctgggattacaggtgtgtgccatcatacctggctaatttttgtatttttagtagagatggggcttcaccatggtggccaggctagtctcgaactcctcggctcaagtga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4827100 493 - 13748885 gcct--------cgatctcccaggctcaggtgattct-cccacttcagcctcctgattagctgggactacagacattacaggcatgcaccaccatgcccagctaattttttgtatttttagtagagacagggttttggcatgttggccaggctggtctcaaactcctggactcacaaaatcta-tcctccttggcctcccaaagtATGTATATGTATTTTTAaatgaaaacttattggag-aaaaagactttatatcaatattg----------------ctgtttttgttgttgttt----aaaacagagtctcactctgtcgcccaggctggagtgcagtagtacaatctcagctcactccaacctctgcctcctggattcaagcgattctcctgcctcagcctcctcagtagctgggattacaggtgtgtgccatcacacctggctaatttttgtatttttggtagagatggggcttcaccatggtggccaggctagtctcgaactcctcggctcaagtga i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856426 494 - 163208435 ggct--------caatctcccaggctcaggtgattctccccacttcagcctcctgattagctgggactacagacgttacaggcatgcaccaccatgcccagctaattttttgtatttttagtagagacagggttttggcatgttggccaggctggtctcaaactcctggactcacacaatctg-ccctccttggcctcccaaagtATGTATATGTATTTTTAaatgaaagcttaatggag-aaaaagactttatattaatattg----------------ctgtttttgttgttgttt----aaaacagagtctcactctgttgcccaggctggaatgcagtagcacagtctcggctccctccaacctctgcctcctgggttcaagcgattcttctgcctcagcctcctcagtagctgggattacaggtgtgtgccaccatacctggctaatttttgtatttttagtagagatgggacttcaccatggtagccaggctggtctcaaactcctcggctcaagtga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87882611 510 - 180051392 gcct--------cgacctcccaggctcaggtgattctgcccacctcagcctcctgagtagctgggactaccggcattacaggcatgtaccaccattcccggctaattttttgtatttttagtagagacagggttttgacatgttggccaggctggtctcaaactcctagactcacacaatctg-ccctccttagcctcccaaagtATGTATGTGTATTTTTAaatgaaagcttcttggag-aaaaagactttatattaatactgttggtttttgttgttcttgttgttgttgttgttt----aaaacagagtctcactctgtttcccaggctggagtgtagtagcacaatctcggctcactccaacctccacctcctaggttcaagtgattatctcgcctcagcctcctcagtagctgggattacaggtgtgcaccaccacacttggctaatttttgtattctttgtagagatggggcttcaccatggtggccaggctggtctcaaactcctgggctcaggtga i rheMac8.chr6 I 2065 T 2553 s macFas5.chr6 87985515 509 - 181584905 gcct--------cgacctcccaggctcaggtgattctgcccacctcagcctcctgagtagctgggactacaggcattacaggcatgtaccaccattcctggctaattttttgtatttttagtagagacagggttttgacatgttggccaggctggtctcaaactcctagactcacacaatctg-ccctccttagcctcccaaagtatgtatgtgtatTTTTAaatgaaagcttcttggag-aaaaagactttatattaatactgttggtttttgttgttcttgttgttgttgttgttt----aaaacagagtctcactctgtttcccaggctggagtgtagtagcacaatctcggctcactccaacctccacctcctaggttcaagtgattatctcgcct-agcctcctcagtagctgggattacaggtgtgcaccaccacacttggctaatttttgtattctttgtacagatggggcttcaccatggtggccaggctggtctcaaactcctgggctcaggtga i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1212157 510 - 8785636 gcct--------cgacctcccaggctcaggtgattctgcccacctcagcctcctgagtagctgggactacaggcattacaggcatgtaccaccattcccggctaattttttgtatttttagtagagacagggttttgacatgttggccaggctggtctcaaactcctagactcacacaatctg-ccctccttagcctcccaaagtatgtatgtgcatTTTTAaatgaaagcttcttggag-aaaaagactttatattaatactgttggtttttgttgttcttgttgttgttgttgttt----aaaacagagtctcactctgtttcccaggctggagtgtagtagcacaatctcggctcactccaacctccacctcctaggttcaagtgattatctcgcctcagcctcctcagtagctgggattacaggtgtgcaccaccacacttggctaatttttgtattctttgtagagatggggcttcaccatggtggccaggctggtctcaaactcctgggctcaggtga i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1675815 510 + 27333823 gcct--------cgacctcccaggctcaggtgattctgcccacctcagcctcctgagtagctgagactacaggcattacaggcatgtaccaccattcccggctaattttttgtatttttagtagagacagggttttgacatgttggccaggctggtctcaaactcctagactcacacaatctg-ccctccttagcctcccaaagtatgtatgtgtatTTTTAaatgaaagcgtcttggag-aaaaagactttatattaatactgttggtttttgttgttcttgttgttgttgttgttt----aaaacagagtctcactctgtttcccaggctggagtgtagtagcacaatctcggctcactccaacctccacctcctaggttcaagtgattatctcgcctcagcctcctcagtagctgggattacaggtgtgcaccaccacacttggctaatttttgtattctttgtagagatggggcttcaccatggtggccaggctggtctcaaactcctgggctcaggtga i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1945455 507 - 91010382 gcct--------cgacctcccaggctcaggtgattctgcccacctcagcctcctgagtaactgggactacaggcattacaggcatgtaccaccattcccggctaattttttgtatttttagtagagacagggttttgacatgttggccaggctgctctcaaactcctagactcacacaatctg-ccctcgttagcctcccaaagtatgtatgtgtatTTTTAaatgaaagcttcttggag-aaaaagactttatattaatactgttggtttttgttg---ttgttgttgttgttgttt----aaaacagagtctcactctgtttcccaggctggagtgtggtagcacaatctcggctcagtccaacctccacctcctaggttcaagtgattatctcgcctcagcctcctcagtagctgggattacaggtgtgcaccaccacgcttggctaatttttgtattctttttagagatggggcctcaccatggtggccaggctggtctcaaactcttgggctcaggtga i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2064900 510 + 5179401 gcct--------cgacctcccaggctcaggtgattctgcccacctcagcctcctgagtagctgggactacaggcattacaggcatgtaccaccattcccggctaattttttgtatttttagtagagacagggttttgacatgttggccaggctggtctcaaactcctagactcacacaatctg-ccctccttagcctcccaaagtatgtatgtgtatTTTTAaatgaaagcgtcttggag-aaaaagactttatattaatactgttggtttttgttgttcttgttgttgttgttgttt----aaaacagagtctcactctgtttcccaggctggagtgtagtagcacaatctcggctcactccaacctccacctcctaggtacaagtgattatctcgcctcagcctcctcagtagctgggattacaggtgtgcaccaccacacttggctaatttttatattctttgtagagatggggcttcaccatggtggccaggcttgtctcaaactcctgggctcaggtga i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7766704 497 - 21726897 gcct--------cgacctcccaggctcaggtgattctgcccacctcagcctcctgagtagctgggac---------tacaggcatgtaccaccattcccggctaattttttgtatttttagtagagacagggttttgacatgttggccaggc-agtctcaaactcctagactcacacaatctg-ccctctttggcctcccaaagtATGTATATGTATTTTTAAATGAAAGCTGCTTGGAG-AAAAAGACTTTATATTAATACTGCTGgtttttgtcg---ttgttattgttgttgttt----aaaacagagtctcactctgtttcccaggctggagtgcagtagcacaatctcggctcactccaacctccacctcctgggttcaaatgattgtctcgcctcagcctcctcagtagctaggattagaggtgtgcaccaccacacttggctaatttttgtattctttgtagagatggggcttcaccatggtggccaggctggtctcaaactcctgggctcaggtga i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112583712 501 + 204313951 ttctcgactttccgacttcccaggctcagg---ttcttcccacctcagcctcctgagtagctgaaag---------tacaagcatgtaccaccatgcctggctaatttgttgtatttttagtagagacagggtttttccatgttggtcaggctggtctcaaactcctagactcacacaatccg-ctcccgttggcctcccaaagtATGTATATGTATTTTTAAATGAAAGCTTATTGGAG-AAAAGGACTTTATATTAATACTGCTG-TTTTG-------CTGTTGCTGCTGTTGtttttt-aaggcagactctcactctgtcacccaggctggagtgcagtagcacaaacttggctccctgcaacctccatctcctgggttcaagtgattctcctgcctcagcctcctttgcagctgggattacaggtgtgcgccaccacccctggctaatttttgtatttttagtagaaatagggcttcaccatggtggccacactcgtcttgaactcctggcctcaaatga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45035014 495 + 71252344 gcct--------cgacctcccaggcttggg---ttcttcccacctcagcctcctgagtagctgagac---------tacaagcatgttccactatgcctggctaattttttgtatttttagtagcgacagggtttttccatgttggccaggctggtctcaaactcctggactcacacaatctg-cccgccttggcctcccaaagtATGTATATGTATTTTTAAATGAAAGCTTATTGGAG-AAAATGACTTTATATTAATACTGCTGTTTTTG-------CTGTTGCTGTTGTTGttttttcaagacagactctcaccctgtcacccaggctggagtgcaatagcacaaacatggctcactgcaacctccgtctcctgggttcaagtgattgtcctgcctcagcctcctcagcagctgggattacaggtgtgtgccaccacccctggctaatttttgtattttcagtagaaatagggcttcaccatggtggccaagctggtcttgaactcctggcctcaaacga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 395260 495 - 1393929 gcct--------cgacctcccaggctcaag---ttcttcccacctcagcctcctgagtagctgagac---------tacaggcatgtgccaccatgcctggctaattttttgtatttttagtagagacagggtttttccatgttggccaggctggtctcaaactcctggactcacacagccggcccccccttggcctcccaaagtatgtatatgtatttttaaatGAAAGCTTATTGGAG-AAAAGGACTTTATATTAATACTGCTGTTTTTC-------CTGTTGCTGCTGTTGtttttt-aagacagactctcactctgtcacccaggctggagtgcagtagcataaacatggctcactgcaacctccgtctcctgggttcaagtgattcttctgcctcagcctcctcagcagctgggattacaggtgtgcgccaccacccctggctaatttttgtatttttagtagaaatagggcttcaccatggcggccaggctggtcttgaactcctggcctcaaatca i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1467055 491 - 15889662 gcct--------caacctcccaggctcagg---ttcttcccacctcagcctcctgagtagctgagac---------tacaggcatgtaccaccatacctggctaattttttgtatttttagtagagacagggtttttccatgttggccaggctggtctcaaactcctggactcacacagtctg-cctcccttggcctcccaaagtatgtatatgtatttttaaatGAAAGCTTATTGGAG-AAAAGGACTTTATATTAATActgctgtttttg-------ctgttgctgttgttgttt----aagacagactctcactctgtcacccaggctggagtgcagtagcacaaacgtggctcactgcaacctctgtctcctgggttcaagtgattctcctgcctcagcctccttagcagctgggattacaggtgtgcgctaccacccctggctaatttttgtatttttagtagaaatagggcttcaccatggtggccaggctggtcttgaactcctggcctcaaatga i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1356717 0 - 29863360 C a score=606031.000000 s hg38.chr5_GL383530v1_alt 94795 66 + 101241 tctgcccacctttgcctcccaaagttctgggattacaggcgtgagccaccacgcat-ggccTACTAC s panTro5.chr5 20328746 66 + 181907262 tctgcccacctttgcctcccaaagttctgggattacaggcgtgagccaccacgcat-ggccTACTAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20340937 66 + 183735486 tctgcccacctttgcctcccaaagttctgggattacaggcgtgagccaccacgcat-ggccTACTAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4827593 66 - 13748885 tctgcccacctttgcctcccaaagttctgggattacaggcgtgagccaccacgcat-ggcctactac i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856920 66 - 163208435 tccgcccacctttgcctcccaaagttctgggattacaggcgtgagccaccatgcct-ggcctactac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87880568 67 - 180051392 tctgcccatcttggcctcccaaagttctgggattataggcgtgagccaccacttccggGCCTACTAC i rheMac8.chr6 T 2553 C 0 s macFas5.chr6 87986024 66 - 181584905 tctgcccatcttggcctcccaaagttctgggattataggcgtgagccaccacttcc-ggcctactac i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1212667 66 - 8785636 tctgcccatgttggcctcccaaagttctgggattataggcgtgagccaccacttcc-ggcctactac i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1676325 66 + 27333823 tctgcccatcttggcctcccaaagttctgggattataggcgtgagccaccacttcc-ggcctactac i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1945962 66 - 91010382 tccgcccatcttggcctcccaaagttctgggattacaggcgtgagccaccacttcc-ggcctactac i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2065410 66 + 5179401 tctgcccatcttggcctcccaaagttctgggattataggcgtgagccaccacttcc-ggcctactac i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7767201 66 - 21726897 tctgcccatcttggcctcccaaagttctgggattacaggcgtgagccaccacttcc-agccTACTAC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112584213 66 + 204313951 tccacctgccgcagcctcccaaagtttggggattacaggcgtgagccaccacgccc-AATGTACTAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45035509 66 + 71252344 tccacctgcctcagcctcccaaagttctgagattacaggcgtgagccaccacgccc-TACCTACTGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 395755 66 - 1393929 tccacctgtctcagcctcccaaagttctgggattatagccatgagccaccatgccc-aaccTACTAC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1467546 66 - 15889662 tccacctgcctcagcctctcaaagttctgggattataggcgtgagccaccatgccc-aacctactac i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14349160 2074 + 91889043 I e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1356717 0 - 29863360 C a score=479627.000000 s hg38.chr5_GL383530v1_alt 94861 40 + 101241 tgctcgttcttatgtgccccagacctagaatagtgctggg s panTro5.chr5 20328812 40 + 181907262 tgctcgttcttatgtgccccagacctagaatagtgctggg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20341003 40 + 183735486 tgctcgttcttatgtgccccagacctagaatagtgctggg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4827659 40 - 13748885 tgctcgttcttatgtgccccagacctagaatagtgctggg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53856986 40 - 163208435 tgctcgttctcatgtgccccagacctagaatagtgctggg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87880635 40 - 180051392 tgctcgttcttatgtgccccagacctagaatagtgctggg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87986090 40 - 181584905 tgctcgttcttatgtgccccagacctagaatagtgctggg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1212733 40 - 8785636 tgctcgttcttatgtgccccagacctagaatagtgctagg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1676391 40 + 27333823 tgctcgttcttatgtgccccagacctagaatagtgctggg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1946028 40 - 91010382 tgctcgttcttatgtgccccagacctagaatagtgctggg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2065476 40 + 5179401 tgctcgttcttatgtgccccagacctagaatagtgctggg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7767267 40 - 21726897 TGCTCATTCTTATGTGCACCAGACCTAGAATAGTGCTGGG i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112584279 40 + 204313951 TGCTCGTTCTTTTGTGCCCCAGACCTAGAATAGTGCTGGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45035575 40 + 71252344 TGCTCGTTCTTTTGTGCCCCAGACCTAAAATAGTGTTGGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 395821 40 - 1393929 TGCTCGTTCTTTTGTGCCCCAGACCTAGAATAGTGCTGGG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1467612 40 - 15889662 tgctcgttCTTTCGTGCCCCAGACCTAGAATAGTGCTGGG i aotNan1.NW_018506370v1 C 0 C 0 s canFam3.chr3 14351234 40 + 91889043 tgctcattgttatgtgccccagacctagaacagaggtggg i canFam3.chr3 I 2074 C 0 e micMur3.chr12 84850403 9272 + 108143057 I e otoGar3.GL873536 1356717 0 - 29863360 C a score=2189247.000000 s hg38.chr5_GL383530v1_alt 94901 202 + 101241 catactaaacaaatatttgttaaaAAAA----AATACATTTTATCAATTAGAATAACAAAGatagttttt-aagtcctttcacatcaagtagctcatttgattttctcaaggaggcaagaaggcctataaataggaatcaccagtattttataggg-aagaaatgcagactcagaACGCTGGCATGAGG-TTTTGGTGTTAGAGCCAGA s panTro5.chr5 20328852 204 + 181907262 catactaaacaaatatttgttaaaaaaat--aaatACATTTTATCAATTAGAATAACAAAGatagttttt-aagtcctttcacatcaagtagctcatctgattttctcaaggaggcaagaaggcctataaataggaatcaccagtattttataggg-aagaaatgcagactcagaACGCTGGCATGAGG-TTTTGGTGTTAGAGCCAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20341043 202 + 183735486 catactaaacaaatatttgttaaaAAAA----AATACATTTTATCAATTAGAATAACAAAGatagttttt-aagtcctttcacatcaagtagctcatctgattttctcaaggaggcaagaaggcctataaataggaatcaccagtattttataggg-aagaaatgcagactcagaaggctGGCATGAGG-TTTTGGTGTTAGAGCCAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4827699 203 - 13748885 catactaaacaaatatttgttaaaAAAA---AAATACATTTTATCAATTAGAATAACAAAGatagttttt-aagtcctttcacatcaagtagctcatttgattttctcaaggaggcaagaaggcctataaataggaatcaccagtattttataggg-aagaaatgcagactcagaACGCTGGCATGAGG-TTTTGGTGTTAGAGCCAGA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53857026 201 - 163208435 catactaaacaaatatttgttaaaaaaat--aaatAAATTTTATCAATTAGAATAACAAAGATAG---AT-aagtcctttcacatcaagtagctcatttgattttctcaaggaggcaagaaggcctataaataggaatcaccagtattttatagag-aagaaatgcagactcagaATGCTGGCATGAGG-TTTTGGTGTTAGagccaga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87880675 205 - 180051392 catactaaacaaatatttgttaaaAAAAAA-AAATAAATTTTATCAATTAGAATAACAAAGatagttttt-aagtcctttcacatcaagtagttcatctgattttctcaaggaggcaagaaggcctataaataggaattgtcactattttataggg-aagaaatgcggactcagaACACTGGCATGAAG-TTTTGGTGTTAGAGCCAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87986130 206 - 181584905 catactaaacaaatatttgttaaaAAAAAATAAATAAATTTTATCAATTAGAATAACAAAGatagttttt-aagtcctttcacatcaagtagctcatctgattttctcaaggaggcaagaaggcctataaataggaattgtcactattttataggg-aagaaatgcggactcagaACACTGGCATGAAG-TTTTGGTGTTAGAGCCAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1212773 205 - 8785636 catactaaacaaatatttgtttaaAAAAAA-AAATAAATTTTATCAATTAGAATAACAAAGatagttttt-aagtcctttcacatcaagtagctcatctgattttctcaaggaggcaagaaggcctataaataggaattgtcactattttataggg-aagaaatgcggactcagaACACTGGCATGAAG-TTTTGGTGTTAGAGCCAGA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1676431 205 + 27333823 catactaaacaaatatttgttaaaAAAAAA-AAATAAATTTTATCAATTAGAATAACAAAGatagttttt-aagtcctttcacatcaagtagctcatctgattttctcaaggaggcaagaaggcctataaataggaattgccactattttataggg-aagaaatgcggactcagaACACTGGCATGAAG-TTTTGGTGTTAGAGCCAGA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1946068 204 - 91010382 catactaaacaaatatttgttaaaaaaaa--aaatAAATTTTATCGATTAGAATAACAAAGatagttttt-aagtcctttcacatcaagtagctcatctgattttctcaaggaggcaagaaggcctataaataggaattgccactattttataggg-aagaaatgcagactcagaACATTGGCATGAAG-TTTTGGTGTTAGAGCCAGA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2065516 205 + 5179401 catactaaacaaatatttgttaaaaaaaat-aaatAAATTTTATCAATTAGAATAACAAAGatagttttt-aagtcctttcacatcaagtagctcatctgattttctcaaggaggcaagaaggcctataaataggaattgccactattttataggg-aagaaatgcagactcagaACACTGGCATGAAG-TTTTGGTGTTAGAGCCAGA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7767307 199 - 21726897 CATACTA---AAATATTTGTTAAAAAA----AAATAAATTTTATCAATTAAAATAACAAAGatagttttt-aagtcctttcacatcaagtagctcatctgattttctcaagaaggcaagaaggcctataaataggaattgccactattttataggg-aagaaatgcggactcagaACACTGGCATGAAG-TTTTGGTGTTAGAGCCAGA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112584319 202 + 204313951 CATACTAAACAAATACTTACTTTAAA-----AAATAAATTTTATCAATTAGAATAACAAAGatagttttcaaagtcctttcacatcaagtagctgatttgattttctcaaggaggcaagaaggcctataaatgggaatcaccactattttataggg-aagaaatacagactcagaACACTGGCATGAGG-TTTTGGTGTGCAAGCGCGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45035615 203 + 71252344 CATACTAAACAAATACTTGTTTTAAA-----AAATAAATTTTATCAATTAGAATAACAAAGatagtttttaaagtcctttcacattaagtagctcatttgattttctcaaggaggcaagaaggcctataaatgggaatcaccacttttttacagggaaaaaaatgcagactcagaACGCTGGCATGAGA-TTTTGGTGTTCAAGTCTGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 395861 200 - 1393929 CATACTAAACAAATACTTATTTTAAA-----AAATAAATTTTATCAATTAGAATAACAAAGatagtttttaaagtcctttcacatcaagtagctcatttgattttctcaaGGAGGCAAGAAGGCCTATAAATGGGAATCAGCGCTATTTTATGGGG-AAGAAATGAAGA--CAGATCGCTGGCCTGAGG-TTTTGGTGTTCAAGCCCGG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1467652 202 - 15889662 CATACTAAACAAATACTTATTTTAAA-----AAATAAATTTTATCAATTAGAATAACAAAGatagttttcaaagtcctttcacctcaagtagctcatttgattttctcaaggaggcaagaaggcctgtaaatgggaatcaccactattttataggg-aagaactgcggactcagaACCCTGGCATGAGG-TTTTGGTGTTCAAGCGCAG i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1356717 196 - 29863360 caaaataaataaata-------aaaaTA---AAATAAATTTTATTGATTGAAATAACGAAGGTCATTTCT-AAGTCCTTTTACATCACTTAGTTCATTTAATCTTCTGAAGGGTGTAATATGGTCTATAAACAGGAAACACTACTATTTTGTGAAA-AAGGAATGTAGACCTAGAAATGTTAAGTCAGC-TTTTCTTGTTAGAACTAGA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14351274 201 + 91889043 cacaccaag-aaatatttgtttaaAA-----GCGAAAATTCTATCAGTTGCAATAAGAAAGACAGTTTCT-GAGTCCTTTCACGTCAGTTAACTCGTTTGTTTTTGTCCAAGATGCAATAAGGTGTGTAAATAGTAACTACCACTACTTTACAGAG-AATAAACATGGTCCTGGAAAGTTTAAATCAGATTTTTGGTGTTGGAACTAGG i canFam3.chr3 C 0 C 0 e micMur3.chr12 84850403 9272 + 108143057 I a score=4593171.000000 s hg38.chr5_GL383530v1_alt 95103 382 + 101241 TTTCTTGCCTTTCAGCCTGCGTTTTGTCCATCTTATCCTGATATTCTGCTAGCACTTCTGGAAAACAAAAGGGTAATAGAGATGTCAG---TTTTTTATGTTTTTGTTTT-GTTTGGTTTTGAGA-AAACCTTATGTAATTTTTCTTTCTTTTGGAGTGA---ACTGAATTCACT-GGGGGAAGCATGTGCTGGAG-------------------GCCAGCAACATCCTGGCAGGTGTGAGTGGGTGGGCCTCTGAGGGCCGTGCTGAGGACACCTTGTTTACGTAGAGGAAACAGGACTGCAGAAAGGCATTTCTCCTTACACTTAAAATCCAGTTGTGCTGAAAATCTGGACCTACCCATAAGCT-ATTTCAAGCAGTCTTCACC-AAAGCCATCCTTTAGAATGCTTTA s panTro5.chr5 20329056 382 + 181907262 TTTCTTGCCTTTCAGCCTGCGTTTTGTCCATCTTATCCTGATATTCTGCTAGCACTCCTGGAAAACAAAAGGGTAATAGAGATGTCAG---TTTTTTCCGTTTTTGTTTT-GTTTGGTTTTGAGA-AAACCTTATTTAATTATTCTTTCTTTTGGAGTGA---ACTGAATTCGCT-GGGGGAAGCATGTGCTGGAG-------------------GCCAGCAACATCCTGGCAGGTGTGAGTGGGTGGGCCTCTGAGGGCCGTGCTGAGGACACCTTGTTTACGTAGAGGAAACAGGGCTGCAGAAAGGCATTTCTCCTTACACTTAAAATCCAGTTGTGCTGAAAATCTGGACCTACCCAGAAGCT-ATTTCAAGCAGTCTTCACC-AAAGCCATCCTTTAGAATGCTTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20341245 382 + 183735486 TTTCTTGCCTTTCAGCCTGCGTTTTGTCCATCTTATCCTGATATTCTGCTAGCACTTCTGGAAAACAAAAGGGTAATAGAGATGTCAG---TTTTTTCCGTTTTTGTTTT-GTTTGGTTTTGAGA-AAACCTTATTTAATTATTCTTTCTTTTGGAGTGA---ACTGAATTCGCT-GGGGGAAGCATGTGCTGGAG-------------------GCCAGCAACATCCTGGCAGGTGTGAGTGGGTGGGCCTCTGAGGGCCGTGCTGAGGACACCTTGTTTACGTAGAGGAAACAGGGCTGCAGAAAGGCATTTCTCCTTACACTTAAAATCCAGTTGTGCTGAAAATCTGGACCTACCCAGAAGCT-ATTTCAAGCAGTCTTCACC-AAAGCCATCCTTTAGAATGCTTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4827902 379 - 13748885 TTTCTTGCCTTTCAGCCTGCGTTTTGTCCATCTTATCCTGATATTCTGCTAGCACTTCTGGAAAACAAAA-GGTAATAGAGATGTCAG---TTTTTTCCGTTTTTGTTTT-GTTTGGTTTTGAGA-AAACCTTATTTAATTTTTCTTTCTTTTGGAGTGA---ACTGAATTCGCT-GGGGGAAGCATGTGCTGGAG-------------------GCCAGCAACATCCTGGCAGGTGTGAGTGGGTGGGCCTCTGAGGGCCGTGCTGAGGACACCTTGTTTACGTAGAGGAAACAGGGCTGCAGAAAGGCATTTCTCCTTACACTTAAAATCCAGAATT--TGAAAATCTGGACCTACCCAGAAGCT-ATTTCAAGCAGTCTTCACC-AAAGCCATCCTTTAGAATGCTTTA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53857227 382 - 163208435 tttcttgcctttcagcctgcgttttgtccatcttatcctgatattctgctagcactcctggaaaacaaaaggataATAGAAATGTCAG---TTTTTTCCGTTTTTGTTTT-GTTTGGTTTTGAGA-AAACCTTATTTAATTTTTCTTTCCTTTGGAGTGA---ACTAAATTCGCT-GGGGGAAGCATGTGCTGGAG-------------------GCCAGCAACATCCCAGCAGGTGTGAGTGGGTGGGCCTCTGAGGGCCGTGCTGAGGACACCTTGTTTATGTAGAGGAAACAGGGCTACAGAAAGGCATTTCCCCTTACACTTAAAATCCAGTTGTACTGAAAATCTGGACCTACCCAGAAGCT-ATTTCAAGCAGTCTTTACC-AAAGCCATCCTTTAGAATGCTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87880880 382 - 180051392 TTTCTTGCCTTTCAGCCTGCTTTTTGTCCATCTTATCCTGAGGTTCTGCTAGCACTCCTGGAAAACAAAAGGGTAATAGAAATGTCAG---ttttttctgtttttgtttt-gtttggttttGAGA-AAACCTTATTTAATTTTTCTTTCTTTTGGAGTGA---ACTGAATTTGCT-GGGGGAAGCGTGTGCTGGAG-------------------GCCAGCAACATCCTGGCAGGTATGAGTGGGTGGGCCTCTGAGGGCCTTGCTGAGGACACCTTGTTTACATAGATGAAACAGGGCTGCAGAAAGGCATTTCCTCTTACACTTAAAATCCAATCGTACTGAAAATCTGGACCTACCCGGAAGGT-ATTTCAAGCAGTCTTTACC-AAAGCCATCCTTTAGAATGCTTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87986336 382 - 181584905 TTTCTTGCCTTTCAGCCTGCTTTTTGTCCATCTTATCCTGAGGTTCTGCTAGCACTCCTGGAAAACAAAAGGGTAATAGAAATGTCAG---ttttttctgtttttgtttt-gtttggttttGAGA-AAACCTTATTTAATTTTTCTTTCTTTTGGAGTGA---ACTGAATTTGCT-GGGGGAAGCGTGTGCTGGAG-------------------GCCAGCAACATCCTGGCAGCTATGAGTGGGTGGGCCTCTGAGGGCCTTGCTGAGGACACCTTGTTTACATAGATGAAACAGGGCTGCAGAAAGGCATTTCCTCTTACACTTAAAATCCAATTGTACTGAAAATCTGGACCTACCCGGAAGGT-ATTTCAAGCAGTCTTTACC-AAAGCCATCCTTTAGAATGCTTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1212978 381 - 8785636 TTTCTTGCCTTTCAGCCTGCTTTTTGTCCATCTTATCCTGAGGTTCTGCTAGCACTCCTGGAAAACAAAAGGGTAATAGAAATGTCAG---ttttttctgtttttgtttt-gtttggttttGAGA-AAACCTTATTTAATTTTTCTTTCTTTTGGAGTGA---ACTGAATTTGCT-GGGGGAAGCGTGTGCTGGAG-------------------GCCAGCAACATCCTGGCAGGTATGAGTGGGTGGGCCTCTGAGGGCCTTGCTGAGGACACCTTG-TTACATAGATGAAACAGGGCTGCAGAAAGGCATTTCCTCTTACACTTAAAATCCAATTGTACTGAAAATCTGGACCTACCCGGAAGGT-ATTTCAAGCAGTCTTTACC-AAAGCCATCCTTTAGAATGCTTTA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1676636 382 + 27333823 TTTCTTGCCTTTCAGCCTGCTTTTTGTCCATCTTATCCTGAGGTTCTGCTAGCACTCCTGGAAAACAAAAGGGTAATAGAAATGTCAg---ttttttctgtttttgtttt-gtttggttttgAGA-AAACCTTATTTAATTTTTCTTTCTTTTGGAGTGA---ACTGAATTTGCT-GGGGGAAGCGTGTGCTGGAG-------------------GCCAGCAACATCCTGGCAGGTATGAGTGGGTGGGCCTCTGAGGGCCTTGCTGAGGACACCTTGTTTACATAGAGGAAACAGGGCTGCAGAAAGGCATTTCCTCTTACACTTAAAATCCAATTGTACTGAAAATCTGGACCTACCCGGAAGGT-ATTTCAAGCAGTCTTTACC-AAAGCCATCCTTTAGAATGCTTTA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1946272 382 - 91010382 TTTCTTGACTTTCAGCCTGCTTTTTGTCCATCTTATCCTGAGGTTCTGCTAGCACTCCTGGAAAACAAAAGGGTAATAGAAATGTCAg---ttttttctgttttcgtttg-gtttggttttgAGA-AAACCTTATTTAATTTTTCTTTCTTTTGGAGTGA---ACTAAATTTGCT-GGGGGAAGCGTGCGCTGGAG-------------------GCCAGCAACATCCTGGCAGGTATGAGTGGGTGGGCCTCTGAGGGCCTTGCTGAGGACACCTTGTTTACATAGAGGAAACAGGGCTGCAGAAAGGCATTTCCTCTTACACTTAAAATCCATTTGTACTGAAAATCTGGACCTACCCGGAAGGT-ATTTCAAGCAGTCTTTACC-AAAGCCATCCTTTAGAATGCTTTA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2065721 382 + 5179401 TTTCTTGCCTTTCAGTCTGCTTTTTGTCCATCTTATCCTGAGGTTCTGCTAGCACTCCTGGAAAACAAAAGGGTAATAGAAATGTCAg---ttttttctgtttttgtttt-gtttggttttgAGA-AAACCTTATTTAATTTTTCTTTCTTTTGGAGTGA---ACTGAATTTGCT-GGGGGAAGCGTGTGCTGGAG-------------------GCCAGCAACATCCTGGCAGGTATGAGTGGGTGGGCCTCTGAGGGCCTTGCTGAGGACACCTTGTTTACATAGAGGAAGCAGGGCTGCAGAAAGGCATTTCCTCTTACACTTAAAATCCAATTGTACTGAAAATCTGGACCTACCCGGAAGGT-ATTTCAAGCAGTCTTTACC-AAAGCCATCCTTTAGAATGCTTTA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7767506 382 - 21726897 TTTCTTGCCTTTCAGCCTGCTTTTTGTCCATCTTATCCTGAGGTTCTGCTAGCACTCCTGGAAAACAAAAGGGTAATAGAAATGTCAG---ttttttctgtttttgtttt-gtttggttttGAGG-AAACTTTATTTAATTTTTCTTTCTTTTGGAGTGA---ACTAAATGTGCT-GGGGGAAGCGTGTGCTGGAG-------------------GCCAGCAACATCCTGGCAGGTATGAGTGGGTGGGCCTCTGAGGGCCTTGCTGAGGACACCTTGTTTACATAGAGGAAACAGGGCTGCAGAAAGGCACTTCCCCTTACACTTAAAATCCAATTGTACTGAAAATCTGGACCTACCCGGAAGGT-ATTTCAAGCAGTCTTTACC-AAAGCTATCCTTTAGAATGCTTTA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112584521 384 + 204313951 CTTCTTCCCTTTCAGCCTGCCTTTTGTCCATAGTATCCTGATGTTCTGCTCGCACTCCTGGAAAACAAAGGGGTAATAGAAATGTCAGG--TTTTTTCTGGTTTTGTTTCAGTTTGGTTTTGAGA-AAACCTCTTTTAATTTTTCTTTCTTTTGGAGTGA---ACTAAATTTGCT-GGGGGAAGCGTGTGCTGGAG-------------------GCCAGCAATATCCTGGCAGGTATGAACGGGTGGGCCTCTGAGGACCGTGCTGAGGACACCTTGTTTACATAGAGGAAGCAGGGCTGCCGATAGGCATTTCCCCTTACACTTAAAATCCAATTGTACTGAAAATCTGGACCTACCCAAAAGCT-ATTTCAAGCATTCTTTACC-AACACTATCCTTTGGAATGCTTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45035818 385 + 71252344 TTTCTTCGCTTTCAGCCTGCCTTTTGTCCATAGTATCCTGATGTTCTGCTAGCACTCCTGGAAAACAAAGGGGTAATAGAAATGTCAGT--TTTTTTCTGGTTTTGTTTTGGTTTGGTTTTAAGA-AAACCTCTTTTAATTTTTCTTTCTTTTGGAGTGA---ACTAAAGTTGCTGGGGGGAAGCGTGTGTTGGAG-------------------GCCAGCAATATCCTGGCAGGTATGAACGGGTGGGCCTCTGAGGGCTGTGCTCAGGACACCTTGTTTACATAGAGGAAGCAGGGCTGCCAAAAGGCATTTCCCCTTACACTTAAAATTCAATTGTACTGAAAGTCTGGACCTACCCAGAAGCT-ATTTCAAGCCTTCTTTACC-AAAACCATCCTTTGGAATGCTTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 396061 385 - 1393929 TTTCTTCCCTTTCAGCCTGTCTTTTGTCCATAGTATCCTGATGTTCTGCCCGCACTCCTGGAAAACAAAGGGGTAATAGAAATGTCAGA--TTTTTTCTGGTTTTGTTTCGGTTTGGTTTTGAGA-AAACCTCTTTTAATTTTTCTTTCTTTTGGAGTGA---ACTAAATTTGCTGGGGGGAAGCATGTGCTGGAA-------------------GCCAGCAATATCCTGGCAGGTATGAACGGGTGGGCCTCTGAGGGCTGTGCTGAGGACACCTTGTTTACATGGAGGAAGCAGGGCTGCCGAAAGGCATTTCCCCTTGCACTTAAAATCCAATTGTACTGAAAGTCTGGACCTACCCAGAAGCT-ATTTCAAGCATTCTTTACC-AAAATCATCCTTTGGAATGCTTTA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1467854 387 - 15889662 TTTCTTCTCTTTCAGCCTGCCTTTAGTCCATAGTATCCTGATGTTCTGCTCACACTCCTGGAAAACGAAGGGGTAATAGAAATGTCAGGGTTTTTTTCTGGTTTTGTTTCGGTTTGGTTTTGAGA-AAACCTCTTCTAATTTTTCTTTCTTTTGGAGTCA---ACTAAATTTGCTGGGGGGAAGCATGTGCTGGAG-------------------GCCAGCAATATCCTGGCAGGTATGAATGGGTGGGCCTCTGAGGGCCATGCTGAGGACACCTTGTTTACATAGGGGAAGCAGAGCTGCTGAAAGTCATTTCCCCTTACACTTAAAATCCAATTGTACTGAAAGTCTGGACCTACCCAGAAGCT-ATTTCAAGCATTCTTTACC-AAAACCATCCTTTGGAATGCTTTG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84859675 374 + 108143057 TTTCTTGACTCTTAGCCTGTGTTTTGTGTATTGTATCCTGATGTTCTGGTAGCACTCCTGGAAAACAAATGGGTAATATAAATGTCAG--------TTTTTCTTGGTTTT-GTTTGGTTTTGAGAGGAGCCTTTTCTCATTTTTCTTTCTTTTGGACTGA---ACTCAATTCCCA-GGGAGTATTGTGTCTTCGAT-------------------GCCAACAGC-TCCTGGCAGGTGCGAGTGGGCAGAGCC---AAGGCTGTTCTGAGGACACCTTGTTTATGTAGAGGAAGTGGGGCTTCAGAAAGGCATTTCCCCTTACACTTAAAATGCAATTGTGCTGCAAATCTGGACCTAGCCACATGCT-ATTTCAAGCAGGCTTTGCT-GAAGCCACCCTTTAGAATGCTTTA i micMur3.chr12 I 9272 C 0 s otoGar3.GL873536 1356913 332 - 29863360 TTTCTTGACTCTGAGTATGTGTTTTGTCTATTATATCCTGATGTTCTGGTA-------------------GAGTAGAGTAAATTTC-----------CTGTTTTTGTTTT-CTTTTGTTTTCAGGTGAGACTTTTCTCATTTTTCTTTGTTTGGGACTGAAGTAATAAATTTTCC-AGGAGTGTGGTGTGGTGAAA-------------------GACAGCAAC-TCCTGGCAGGCGGAGTGGGGTAGGGCC-----------CCTGAAGGCGCCTTGTTTACCTGGAGGAAA------TTTAG---------TTCCTTTTCACTCTAAATGCAATTGTGCTGAAATTCTGGACCTAGCCAGAAGCTAATTATGAGTAAGCTTT-CC-AAAGCCATTGTTTAGAATGCTTTA i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14351475 373 + 91889043 TTTCTTGCCTCTTAATCTGTGTTATGTGCATTATGTCCTGA--------TAACATTCTTGGAAGACAA--GGGCAATATAAACGTCAG---TTTTTCCTGTTACAGTTTT-AC---GTTTGAAAA-GAACTTCTTTTAATTTTTGTTTCTCTTGGGCCAA---ACTGAATTTGCC-AGGGATATTGTGTGTTGGATAGGGTTGCTATTGGTCCACACCAACACCATCCC-TCAGGTAGGAGT---------------CACTGTCCTGAGGGCACCTCGATTATGTAGAGGAAATGAGGCTGCAGAAAGGCATTTCCCCTTACACTTAAAATGCAGTAATGCTGCAAATTTGGATTTCCCCAGAAGCA-ATTTCAAGCAATTTTTACCAAAAGTTATCCTTTAAAATGCTTTA i canFam3.chr3 C 0 I 754 a score=213429.000000 s hg38.chr5_GL383530v1_alt 95485 16 + 101241 GAATTTGATTTGCAAG s panTro5.chr5 20329438 16 + 181907262 GAATTTGATTTGAAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20341627 16 + 183735486 GAATTTGATTTGAAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4828281 16 - 13748885 GAATTTGATTTGAAAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53857609 16 - 163208435 GAATTTGATTTGAAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87881262 16 - 180051392 GAATTTGATTTGAAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87986718 16 - 181584905 GAATTTGATTTGAAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1213359 16 - 8785636 GAATTTGATTTGAAAG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1677018 16 + 27333823 GAATTTGATTTGAAAG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1946654 16 - 91010382 GAATTTGATTTGAAAG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2066103 16 + 5179401 GAATTTGATTTGAAAG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7767888 16 - 21726897 GAATTTGATTTGAAAG i colAng1.NW_012115488v1 C 0 I 218 s calJac3.chr2 112584905 16 + 204313951 GAATTTGATTTGAAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45036203 16 + 71252344 GAATTTGATTTGAAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 396446 16 - 1393929 GAATTTGATTTGAAGG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1468241 16 - 15889662 GAATTTGATTTGAGGG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84860049 16 + 108143057 GAATTTGATTTGAAAG i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1357245 16 - 29863360 GAATTTGATTTCAAAG i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14351848 754 + 91889043 I a score=411479.000000 s hg38.chr5_GL383530v1_alt 95501 38 + 101241 TGGA-TTTTTCTGT--TATGGGAGTCA-----GGGTTTAT-TGTGTG s panTro5.chr5 20329454 38 + 181907262 TGGA-TTTTTCTGT--TATGGGAGTCA-----GGGTTTAT-TGTGTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20341643 37 + 183735486 TGGA-TTTTTCTGT--TATGGGAGTCA-----GGG-TTAT-TGTGTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4828297 38 - 13748885 TGGA-TTTTTCTGT--TATGGGAGTCA-----GGGTTTAT-TGTGTG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53857625 38 - 163208435 TGGA-TTTTTCTGT--TACGGGAGTCA-----GGGTTTAT-TGTGTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87881278 38 - 180051392 TGGA-TTTTTCTGT--TACGGGAGTCA-----GGGTTTAT-TGTGTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87986734 38 - 181584905 TGGA-TTTTTCTGT--TACGGGAGTCA-----GGGTTTAT-TGTGTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1213375 38 - 8785636 TGGA-TTTTTCTGT--TACGGGAGTCA-----GGGTTTAT-TGTGTG i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1677034 38 + 27333823 TGGA-TTTTTCTTT--TACGGGAGTCA-----GGGTTTAT-TGTGTG i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1946670 38 - 91010382 TGGA-TTTTTCTGT--TACGGGAGTCA-----GGGTTTAT-TGTGTG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2066119 38 + 5179401 TGGA-TTTTTCTGT--TACGGGAGTCA-----GGGTTTAT-TGTGTG i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7768122 38 - 21726897 TGGA-TTTTTCTGT--TACGGGAGTCA-----GGGTTTAT-TGTGTG i colAng1.NW_012115488v1 I 218 C 0 s calJac3.chr2 112584921 38 + 204313951 TGGA-CTTTTCTGT--TGGGAGAGTCA-----GGGTTTAT-TGTGTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45036219 38 + 71252344 TGGA-TTTTTCTGT--TGGGAGAGTCA-----GGGTTTAT-TGTGTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 396462 38 - 1393929 TGGA-TTTTTCTGT--TGGGAGAGTCA-----GGGTTTAT-TGTGTG i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1468257 38 - 15889662 TGGA-TTTTTCTGT--TGGGAGAGTCA-----GGGTTTAT-TGTGTG i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84860065 43 + 108143057 TATATTTTTTCTGTGGTACGAGAGTCAA----GCTTTTTTATATGTG i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1357261 46 - 29863360 TAGA-TTTTTCTATGCTACAGGAGCCCAGGGGGGGTGTGTATGTGTT i otoGar3.GL873536 C 0 C 0 e canFam3.chr3 14351848 754 + 91889043 I a score=5817128.000000 s hg38.chr5_GL383530v1_alt 95539 479 + 101241 GTAGGAGGAGAA-TTTACTTTGGATATTCTTTTAATTCCTTCCATGTGCCCC-------AAATGTTTTTCTAAT-TGTTCCTCAGCTGAGAAG--ATAGCTTCATGAAGGAATAGAGGGAAAGGGTACCAATGTTTGTTGAAACAGGTGCCAGTCAGCCACACTGAGTGAAAACCAAACTGAGTCCA-GGAACACGAGTTTGGTTTCAAGCTTCTTGTGCCATTTCCTGCGTGTTTGC-CTGCTAAAGGGCAGTTGAGTGTTCAAAGCTATCCCTCTCAATTGAAAACTCATCTGACAATAATGAAGCGTGTCAGCTCAGAAAGGCATTAGGAGCTGGAGACATAGCCAAGTGC-T-TGTATT-CAACATTGATTAATGAATTGGTTCTAATCTCA-GAGCATCATTTTCACTTATAATTTTTAACTC-AAAAAATTGATTTAAAAGTGCAATATAAGTTTAATTC-TATTTTTTTCCCACTGTGTCTGGAGAACAAG----- s panTro5.chr5 20329492 479 + 181907262 GTAGGAGGAGAA-TTTACTTTGGATATTCTTTTAATTCCTTCCATGTGCCCC-------AAATGTTTTTCTAAT-TGTTCCTCAGCTGAGAAG--ATAGCTTCATGAAGGAATAGAGGGAAAGGGTACCAATGTTTGTTGAAACAGGTGCCAGTCAGCCACACTGAGTGAAAACCAAACTGAGTCCA-GGAACACGAGTTTGGTTTCAAGCTTCTTGTGCCATTTCCTGCGTGTTTGC-CTGCTAAAGGGCAGTTGAGTGTTCAAAGCTATCCCTCTCAGTTGAAAACTCATCTGACAATAATGAAGCGTGTCAGCTCAGAAAGGCATTAGGAGCTGGAGACATAGCCAAGTGC-T-TGTATT-CAACATTGATTAATGAATTGGTTCTAATCTCA-GAGCATCATTTTCACTTATAATTTTTAACTC-AAAAAATTGATTTAAAAGTGCAATATAAGTTTAATTA-TATTTTTTTCCCACTGTGTCTGGAGAACAAG----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20341680 479 + 183735486 GTAGGAGGAGAA-TTTACTTTGGATATTCTTTTAATTCCTTCCATGTGCCCC-------AAATGTTTTTCTAAT-TGTTCCTCAGCTGAGAAG--ATAGCTTCATGAAGGAATAGAGGGAAAGGGTACCAATGTTTGTTGAAACAGGTGCCAGTCAGCCACACTGAGTGAAAACCAAACTGAGTCCA-GGAACGCGAGTTTGGTTTCAGGCTTCTTGTGCCATTTCCTGCGTGTTTGC-CTGCTAAAGGGCAGTTGAGTGTTCAAAGCTATCCCTCTCAGTTGAAAACTCATCTGACAATAATGAAGCGTGTCAGCTCAGAAAGGCATTAGGAGCTGGAGACATAGCCAAGTGC-T-TGTATT-CAACATTGATTAATGAATTGGTTCTAATCTCA-GAGCATCATTTTCACTTATAATTTTTAACTC-AAAAAATTGATTTAAAAGTGCAATATAAGTTTAATTA-TATTTTTTTCCCACTGTGTCTGGAGAACAAG----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4828335 478 - 13748885 GTAGGAGGAGAA-TTTACTTTGGATATTCTTTTAATTCCTTCCATGTGCCCC-------AAATGTTTTTCTAAT-TGTTCCTCAGCTGAGAAG--ATAGCTTCATGAAGGAATAGAGGGAAAGGGTACCAATGTTTGTTGAAACA-GTGCCAGTCAGCCACACTGAGTGAAAACCAAACTGAGTCCA-GGAACACGAGTTTGGTTTCAAGCTTCTTGTGCCATTTCCTGCGTGTTTGC-CGGCTAAAGGGCAGTTGAGTGTTCAAAGCTATCCCTCTCAGTTGAAAACTCATCTGACAATAATGAAGCGTGTCAGCTCAGAAAGGCATTAGGAGCTGGAGACATAGCCAAGTGC-T-TGTATT-CAACATTGATTAATGAATTGGTTCTAATCTCA-GAGCATCATTTTCACTTATAATTTTTAACTC-AAAAAATTGATTTAAAAGTGCAATATAAGTTTAATTC-TATTTTTTTCCCACTGTGTCTGGAGAACAAG----- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53857663 479 - 163208435 GTAGGAGGAGAA-TTTACTTTGGATATTCTTTTAATTCCTTCCATGTGCCCC-------AAATGTTTTTCTAAT-TGTTCCTCAGCTGAGAAG--ATAGCTTCATGAAGGAATAGAGGGAAAGGGTACCAATGTTTGTTCAAACAGGTGCCAGTCAGCCACACTGAGTGAAAACCAAACTGAGTCCA-GGAACACGAGTTTGGTTTCAAGCTTCTTGTGCCATTTCCTGCGTGTTTGC-CTGCTAAAGGGCAG-TGAGTGTTCAAAGCTATCCCTCTCAGTTGAAAACTCATCTGACAGTAATGAAGCATGTCAGCTCAGAAAGGCATTAGGAGCTGGAGACATAGCCAAGTGC-TATGTATT-CAACAGTGATTAATGAATTGGTTCTAATCTCA-GAGGATAATTTTCACTTATAATTTTGAACTC-AAAAAATTGATTTAAAAGTCCAATATAAGTTTAATTG-TATTTTTTTCCCACTGTGTCTGGAGAACAAG----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87881316 478 - 180051392 GTAGGAGGAGAA-TTTACTTTGGATATTCTTTTAATTCCTTCCATGTGCCCC-------AAATGTTTTTCTAAT-TGTTCCTCAGCTGAGAAG--ATAGCTTCACGAAGGAATAGAGGGGAAGGGTACCAATGTTTGTTGAAGCAGGTGCCAGTCAGCCACACTGAGTGAAAACCAAACTGAGTCTA-GGAACGCGAGTTTGGTTTCAAGCTTCTTGTGCCATTTCCTGCGTGTTTGC-CTGCTAAAGGGCAG-TGAGTGTTCAAAGCTATCCCTCTCAGCTGAAAACTCATCTGACAGTAATGAAGCATGTCAGTTCAGAAAGGCATTAGGAACTGGAGACATAGCCAACTGC-T-TGTATT-CAACATTGATTAATGAATTGGTTCTAATCTCA-GAGGATAATTTTCACTTATATTTTTTAACTC-AAAAAATTGATTTAAAAGTCCAATATGAGTTTAATTC-TATTTTTTCCCCACTGTGTCTGGAGACAAGT----- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87986772 478 - 181584905 GTAGGAGGAGAA-TTTACTTTGGATATTCTTTTAATTCCTTCCATGTGCCCC-------AAATGTTTTTCTAAT-TGTTCCTCAGCTGAGAAG--ATAGCTTCACGAAGGAATAGAGGGGAAGGGTACTAATGTTTGTTGAAGCAGGTGCCAGTCAGCCACACTGAGTGAAAACCAAACTGAGTCTA-GGAACGCGAGTTTGGTTTCAAGCTTCTTGTGCCATTTCCTGCGTGTTTGC-CTGCTAAAGGGCAG-TGAGTGTTCAAAGCTATCCCTCTCAGCTGAAAACTCATCTGACAGTAATGAAGCATGTCAGTTCAGAAAGGCATTAGGAACTGGAGACATAGCCAACTGC-T-TGTATT-CAACATTGATTAATGAATTGGTTCTAATCTCA-GAGGATAATTTTCACTTATATTTTTTAACTC-AAAAAATTGATTTAAAAGTCCAATATGAGTTTAATTC-TATTTTTTCCCCACTGTGTCTGGAGACAAGT----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1213413 478 - 8785636 GTAGGAGGAGAA-TTTACTTTGTATATTCTTTTAATTCCTTCCATGTGCCCC-------AAATGTTTTTCTAAT-TGTGCCTCAGCTGAGAAG--ATAGCTTCACGAAGGAATAGAGGGGAAGGGTACCAATGTTTGTTGAAGCAGGTGCCAGTCAGCCACACTGAGTGAAAACCAAACTGAGTCTA-GGAACGCGAGTTTGGTTTCAAGCTTCTTGTGCCATTTCCTGCGTGTTTGC-CTGCTAAAGGGCAG-TGAGTGTTCAAAGCTATCCCTCTCAGCTGAAAACTCATCTGACAGTAATGAAGCATGTCAGTTCAGAAAGGCATTAGGAACTGGAGACATAGCCAACTGC-T-TGTATT-CAACATTGATTAATGAATTGGTTCTAATCTCA-GAGGATAATTTTCACTTATATTTTTTAACTC-AAAAAATTGATTTAAAAGTCCAATATGAGTTTAATTC-TATTTTTTCCCCACTGTGTCTGGAGACAAGT----- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1677072 478 + 27333823 GTAGGAGGAGAA-TTTACTTTGGATATTCTTTTAATTCCTTCCATGTGCCCC-------AAATGTTTTTCTAAT-TGTTCCTCAGCTGAGAAG--ATAGCTTCACGAAGGAATAGAGGGGAAGGGTACCAATGTTTGTTGAAGCAGGTACCAGTCAGCCACACTGAGTGAAAACCAAACTGAGTCTA-GGAACGCGAGTTTGGTTTCAAGCTTCTTGTGCCATTTCCTGCGTGTTTGC-CGGCTAAAGGGCAG-TGAGTGTTCAAAGCTATCCCTCTCAGCTGAAAACTCATCTGACAGTAATGAAGCATGTCAGTTCAGAAAGGCATTAGGAACTGGAGACATAGCCAACTGC-C-TGTATT-CAACATTGATTAATGAATTGGTTCTAATCTCA-GAGGATAATTTTCACTTATATTTTTTAACTC-AAAAAATTGATTTAAAAGTCCAATATGAGTTTAATTC-TATTTTTTCCCCACTGTGTCTGGAGACAAGT----- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1946708 478 - 91010382 GTAGGAGGAGAA-TTTATTTTGGATATTCTTTTAATTCCTTCCATGTGCCCC-------AAATGTTTTTCTAAT-TGTTCCTCAGCTGAGAAGATATAGCTTCACGAAGGAATAGAGGGGAC-GGTACCAATGTTTGTTGAAGCAGGTGCCAGTCAGCCACACTGAGTGAAAACCAAACGGAGTCTA-GGAACGCGAGTTTGGTTTCAAGCTTCTTGTGCCATTTCCTGCGTGTTTGC-CTGCTAAAGGGCAG-TGAGTGTTCAAAGCCATCCCTCTCAGTTGAAAACTCATCTGACAGTAATGAAGCATGTCAGTTCAGAAAGGCATTAGGAACTGGAGACATAGCCAACTGC-T-TGTATT-CAACATTGATTAATGAATTGGTTCTAATCTCA-GAGGATAATTTTCACTTATAATTTTTAACTC-AAAAAATTGATTTAAAAGTCCAATATGAGTTTAATTC-TA-TTTTTCCCCACTGTGTCTGGAGACAAGT----- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2066157 478 + 5179401 GTAGGAGGAGAA-TTTACTTTGGATATTCTTTTAATTCCTTCCATGTGCCCC-------AAATGTTTTTCTAAT-TGTTCCTCAGCTGAGAAG--ATAGCTTCACGAAGGAATAGAGGGGAAGGGTACCAATGTTTGTTGAAGCAGGTGCCAGTCAGCCACACTGAGTGAAAACCAAACTGAGTCTA-GGAACGCGAGTTTGGTTTCAAGCTTCTTGTGCCATTTCCTGCGTGTTTGC-CTGCTAAAGGGCAG-TGAGTGTTCAAAGCTATCCCTCTCAGCTGAAAACTCATCTGACAGTAATGAAGCATGTCAGTTCAGAAAGGCATTAGGAACTGGAGACATAGCCAACTGC-T-TGTATT-CAACATTGATTAATGAATTGGTTCTAATCTCA-GAGGATAATTTTCACTTATATTTTTTAACTC-AAAAAATTGATTTAAAAGTCCAATATGAGTTTAATTC-TATTTTTTCCCCACTGTGTCTGGAGACAAGT----- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7768160 477 - 21726897 GTAGGAGGAGAA-TTTACTTTGGATATTCTTTTAATTCCTTCCATGTGCACC-------ACATGTTTTTCTAAT-TGTTCCTCAGCTGAGAAG--ATAGCTTCACGAAGGAATAGAGGGGAAGGGTACCAATGTTTGTTGAAGCAGGTGCCAGTCAGCCACACTGAGTGAAAACCAAACTGAGTCTA-GGAACGCGAGTTTGGTTTCAAGCTTCTTGTGCCATTTCCTGCGTGTTTGC-CTGCTAAAGGGCAG-TGAGTGTTCAAAGCTATCCCTCTCAGTTGAAAACTCATCTGACAGTAATGAAGCATGTCAGCTCAGAAAGGCATTAGGAACTGGAGACATAGCCAGCTGC-T-TGTATT-CAACATTGATTAATGAATTGGTTCTAATCTTA-GAGGATAATTTTCACTTTTAATTTTTAACTC-AAAAAATTGATTTAAAAGTCTAATATGAGTTTAATTC-TA-TTTTTGCCCACTGTGTCTGGAGACAAGT----- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112584959 479 + 204313951 GTAAGAGGCGAA-TTTACTTTGGCTATTCTTTTAATTCCTTCCCCGTGCCCC-------AGATGTTTTTCTCAT-TGTTCCTCAGCTGAGAAG--ATAGCTTCATGAAGGAATAGAGGGGAAGGGTACCACTGTTTGTTGAAGCAGGTGCCAGTTAGCCACACTGAGTGAAAACCCAACAGAGTCCA-AGAACACGGGTTTGGTTTCAAGCCTCTTGTGCCATTTCCTGTGTGTTTTC-CTGCTAAAGGGCAG-TGAGTGTTCAAAGCTATCCCTCTCAGTTGAAAACTCATCTGACAGGAATGAAGCATGTCAGCTCAGAAAGGCATTAGGAGCTGGAGACATAGACAAGTGCTT-TGTATT-CAACATTGATTAATGAATTGGTTCTAATCTCA-GAGGATGATTTTCACTGATAATTTTTAACT--CAAAAATTAATTTAAAAGTAGAGCATGAATTTAATTCTTTTTTCCCCCCCACTGTGCAGGGAGAACAAG----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45036257 479 + 71252344 GTAAGAGGTGAA-TTTACTTTGGATATTCTTTTAATTCCTTCCATGTGCCCC-------AGATGTTTTTCTCAT-TGTTCCTCAGCTGAGAAC--ATAGCTTCATGAAGGAATAGAGGGGAAGGGTACCAATGTTTGTTGAAGCAGGTGCCAGTCAGCCACACTAAGTGAAAACCAAACAGAGTCCA-AGAACACGGGTTTGGTTTCAAGCCTCTTGTGCCATTTCCTGTGTGTTTTC-CTGCTAAAGGGCAG-TGAGTGTTCAAAGCTATCCCTCTCAGTTGAAAACTCACCTGCCAGTAATGAATCATGTCAGCTCAGAAAGGCATTAGGAGCTGGAGACATAGCCAAGTGC-T-TGTATT-CAACATTGATTAATGAATTGGTTCTAATCTCA-GAGGATGATTTTCACTTATAGTTTTTAACTG-AAAAAATTGATTTAAAAGTAAAGCCTGAATTTAATTCATTTTTTTTTCCCACTGTGTCTGGAGAACAAG----- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 396500 478 - 1393929 GTAAGAGGCGAA-TTTACTTTGGATATTCTTTTAATTCCTTCCATGTGCCCC-------AGATGTTTTTCTCAT-TGTTTCTCAGCTGAGAAG--ATAGCTTCATGAAGGAATAGAGGGGAAGGGTACCAATGTTTGTTGAAGCAGGTGCCAGTCAGCCACACTGAGTGAAAACTAAACAGAGTCCA-AGAACACGGGTATGGTTTCAAGCCTCTTGTGCCATTTCCTGTGTGTTTTC-CTGCTAAAGGGCAG-TGAGTGTTCAAAGCTATCCCTCTCAGTTGAAAACTCATCTGACATTAATGAAGCATGTCAGCTCAGAAAGGCATTAGGAGCTGGAGACATAGCCAAGTGC-T-CGTATT-CCACATTGATTAATGAATTGTTTCTAATCTCA-GAGGATGATTTTCACTTATAGTTTTTAACTC-AAAAAATTGATTTAAAAGTAGAGCATGAATTTACTTC-TTTTTTTTACCCACTGTGTGTGGAGAACAAG----- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1468295 476 - 15889662 GTAAGAGGCAAA-TTTACTTTGGATATACTTTTAATTCCTTCTGTGTGCCCC-------AGATGTTTTTCTCAT-TGTTCCTTGTCTGAGAAG--ATAGCTTCATGAAGGAATAGAGGGGAAGGGTACCAATGTTTGTTGAAGCAGATGCCAGTCAGCCACACTGAGTGAAAACCAAACAGAGTCCA-AGAACACGGGTTTGGTTTCAAGCCTCTTGTGCCATTTCCTGTGTGTTTTC-CTGCTAAAGGGCAG-TGAGTGTTCAAAGCTATCCCTCTCAGTTGAAAACTCATCTGACAATAATGAAGCATGTCAGCTCAGAAAGGCATTAGGAGCTGGAGACATAGCCAAGTGC-T-TGTATT-CAACATTGATTAATGAATTGGTTCTAATCTCA-GAGGATGATTTTCACTTATAATTTTTAACT--CAAAAATTGATTTAAAAGTAGAACATGAATTTAATTCATTTTTTT--CCCACTATGTCTGGAGAACAAG----- i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84860108 478 + 108143057 GCAGGAGGAGAA-TTTATTTTGGATATTTTTCTAGTTCTTTCTGCATGCCCCCAATTCTAAATGTTCTTTCTATTTTTTCCTCAGCTGAAAAG--ATAGCTTCACGAAGGAATAGAGTTGAAGGGTACCCGTGTTTGTTGAAGCAGGTGCTAATCAGCCACACTGAGGGAAAAACAAACTGAGTGTA-AGAATATGAAGTTGGTTTAAAGCTTC-TGTGCCATTTGCTGCGTGTGTGCTCTGCTAAAGGGCAG-CGGGCGTTCAAAGCTATCCCTCTCAGTTTAAAACGTGTCTGACAATAATGAATCATGTCAGTTCAGAAAGGCACTAAGAGCTGGAGAGATAGCTGAGTGC-T-TGTATT-CAACATCGAGGAAGGAATTG----TGATCTTA-CAAGAAAATTTTCACTTATAATTTTTAACTC-AGAAAACTAGTTTATAACT---ACATGAGTTTAACCC-TA-TTTTTTCCGATTGTGTCTGGAGAACAAA----- i micMur3.chr12 C 0 I 36 s otoGar3.GL873536 1357307 419 - 29863360 AC-----GAGAA-TTTGCTTTGGATATTCTTCTAGCTCTTTCTGCATGCCCCCAGTTCTAAATGTCCTTTTCTT--------------------------GTCAAAAAGGGGTAGAATTTAAGGGCACCAAAACCTGCTTGAGCAGGCGCTGATCAGCTGCACTG-GGGGAAAGCAAACTGAGCCCACAGAGCAGGAGGTTGG--CAAAGCTTC-TGTGCCCTTTGCTGCATGCATGCTCTGCTAGGGG------------------------CTCTCACTTTAAAACTTGTCTAAAAGTAATGAATTGTGCCAGTTCAGAAAGGCACCAAAAGCTGTGGACAGAGCTAAGTAC-T-GGCACT------TTGAGGAAGGAATTG----CAATCTTA-C---AGAATTTTCACTTACAATTTTTAACTC-AAGAAACTGGTCTATAAGTATAACATAAGTTTAATTC-TC-TTTTTGCCTGTTGTGTCTTAAGAACAAA----- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14352602 476 + 91889043 GTAAGAGGAGGATTTTGCTTGGGAAATTC---TAGTTTCTTCCATTTGCCCCCAATCCAAAATG---TTCTATT-TTCTCCCCAACTGAATAT--ATAGCTTTGTGAA-AAAGAGAGAGGAA-GGTACCGGTATCTGTTGAA-TAGGTACT-GTCAGCCACCCCAAAAGAAAACCA----GAGTCTA-ATATCAAGGGCTTGGTTTAAAGCTTAGTGTGCCATTTCCTGCATGTTTGCTGTGCTAAAGAGCAG-CAAATGTTTAAAACTATTCCCCTTAGTTTAAAACTCGCCTGACCATAATGAAGCACGTCAGTTCAGGATGCCGTGAAGAGCTGGAGAGGT-GTCAAGGGC-T-GATATTTCAACATTGATGAATGAATTG----CAATCTTACAAGGATGATGTTCACTTGTAATTTTTAACTTAAAAAAATTGGTCTAAAAGCACAACATGAGCTTAATTC-TATTTTGTTCCCATTGTATATGAAAAAAACCCCAAG i canFam3.chr3 I 754 I 11 a score=243667.000000 s hg38.chr5_GL383530v1_alt 96018 38 + 101241 TTTTTTTCTTGCATTTT------TCCCTTTTTCCCT-------------CA----------ATTTAC----------------- s panTro5.chr5 20329971 38 + 181907262 TTTTTTTCTTGCATTTT------TTCCTTTTTCCCT-------------CA----------ATTTAC----------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20342159 38 + 183735486 TTTTTTTCTTGCATTTT------TTCCTTTTTCCCT-------------CA----------ATTTAC----------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4828813 38 - 13748885 TTTTTTTCTTGCATTTT------TTCCTTTTTCCCT-------------CA----------ATTTAC----------------- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53858142 32 - 163208435 TTTTTCTCTTGCATT------------TTTTTCCCT-------------CA----------GTTTAC----------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87881794 31 - 180051392 TTTTTTTCTTGCAT-------------TTTTCCCCT-------------CA----------ATTTAC----------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87987250 31 - 181584905 TTTTTTTCTTGCAT-------------TTTTCCCCT-------------CA----------ATTTAC----------------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1213891 31 - 8785636 TTTTTTTCTTGCAT-------------TTTCCCCCT-------------CA----------ATTTAC----------------- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1677550 31 + 27333823 TTTTTTTCTTGCAT-------------TTTTTCCCT-------------CA----------ATTTAC----------------- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1947186 31 - 91010382 TTTTTTTCTTGCAT-------------TTTTTCCCT-------------CA----------ATTTGC----------------- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2066635 31 + 5179401 TTTTTTTCTTGCAT-------------TTTTTCCCT-------------CA----------ATTTAC----------------- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7768637 31 - 21726897 TTTTTTTCTTGCAT-------------TTTTTCCCT-------------CA----------GTTTAC----------------- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112585438 30 + 204313951 -TTTTTTCTTGCAT-------------TTATTCCTT-------------CA----------ATTTAC----------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45036736 30 + 71252344 -TTTTTTCTTGTAT-------------TTTTTCCCT-------------CA----------GTTTAC----------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 396978 30 - 1393929 TTTTTTTCTTGCAT-------------TT-TTCCCT-------------CA----------ACTTAC----------------- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1468771 30 - 15889662 -TTTTTTCTTGCAT-------------TTTTTCCCT-------------CA----------ATTTAC----------------- i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1357726 43 - 29863360 -TGTTTTCTTATTT-------------TTTTTTTACAATGGCACTGAAGTA----------ATTTAA----------------- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14353089 71 + 91889043 TTCTTTTCTTCAATGGTACTAAAGTTGTTTATCACT-------------CGCTTAAGTAATATTTGCTTATTATGCTTATTTAT i canFam3.chr3 I 11 C 0 e micMur3.chr12 84860586 36 + 108143057 I a score=3967761.000000 s hg38.chr5_GL383530v1_alt 96056 337 + 101241 TTAAGCATAGATTTTA----------TGTCATTCTCTCATCACATACCAAAAAACTTAGCAGTTGTGCCA----------------ATATAATAAATGTT-GAAGTAAGAAAGACAGGGAGAC-AAATGG----AAAAAAA-AGAGAATACAAA-AAGTATGGCTAACATTATGTAAGAAGAAAAATACAAATGGCTTTCTAGTAACCAAATAAGATGTACACATGAACTTCATAAAT-ATCCTATTGCTTTGTGGAGAC---TTTCGTTTTATTTTAGAATAATT-AAAaatagtaattaacagtttattgagtacttactttatgccaggctctgttctcaggactactcatgaaataa--ctcacagaatccata s panTro5.chr5 20330009 337 + 181907262 TTAAGCATAGATTTTA----------TGTCATTCTCTCATCACATACCAAAAAACTTAGCAGTTGTGCCA----------------ATATAATAAATGTT-GAAGTAAGAAAGACAGGGAGAC-AAATGG----AAAAAAA-AGAGAATACAAA-AAGTATGGCTAACATTATGTAAGAAGAAAAATACAAATGGCTTTCTAGTAACCAAATAAGATGTACACATGAACTTCATAAAT-ATCCTATTGCTTTGTGGAGAC---TTTCGTTTTATTTTAGAACAATT-AAAaatagtaattaacagtttattgagtacttactttatgccaggctctgttctcaggactactcatgaaataa--ctcacagaatccata i panTro5.chr5 C 0 C 0 s panPan2.chr5 20342197 337 + 183735486 TTAAGCATAGATTTTA----------TGTCATTCTCTCATCACATACCAAAAAACTTAGCAGTTGTGCCA----------------ATATAATAAATGTT-GAAGTAAGAAAGACAGGGAGAC-AAATGG----AAAAAAA-AGAGAATACAAA-AAGTATGGCTAACATTATGTAAGAAGAAAAATACAAATGGCTTTCTAGTAACCAAATAAGATGTACACATGAACTTCATAAAT-ATCCTATTGCTTTGTGGAGAC---TTTCGTTTTATTTTAGAACAATT-AAAaatagtaattaacagtttattgagtacttactttatgccaggctctgttctcaggactactcatgaaataa--ctcacagaatccata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4828851 334 - 13748885 TTAAGCATAGATTTTA----------TGTCATTCTCTCATCACATACCAAAAAACTTAGCAGTTGTGCCA----------------ATATAATAAATGTT-GAAGTAAGAAAGAC-GGGAGAC-AAATGG----AAAAAAA-AGAGAATAC-AA-AAGTATGGCTAACATTATGTAAGAAGAAAAATACAAATGGCTTTCTAGTAACCAAATAAGATGTACACATGAACTTCATAAAT-ATCCTATTGCTTTGTGGAGAC---TTTCGTTTTATTTTAGAATAATT-AAAaatagtaattaacagtttattgagtacttactttatgccaggctctgttctcaggactactcatgaaataa--ctcacagaatcc-ta i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53858174 335 - 163208435 TTAAGCATAGATTTTA----------TGTCATTCTCTCATCATGTACCAAAAAACTTAGCAGTTGTGCCA----------------ATATAATAAATGTT-GAAGTAAGAAAGACAGGGAGAC-AAATGG---AAAAAAAA-AGAGAATACAAA-AAGTATGGCTAACATTATGTAAGAAGAAAAATACAAATGGCTTTCTAGTAACCAAATAATATGTACACATGAACTTCATAAAT-ATCCTATTGCTTTGTAGAGAC---TT---TTTTATTTTAGGACAATT-AAAaatagtaattaacagtttattgagtacttactttatgccaggctctgttctcaggactactcatgaaataa--ctcacagaatccata i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87881825 337 - 180051392 TTAAGCATAGATTTTA----------TGTCATTCTCTCATCACATACCAAAAAACTCAGCAGTTGTGCTA----------------ACATAATAAATGTT-GAAGTAAGAAAGACAGGGAGAC-AAATGG---GGGAAAAA-AGAGAATACAAA-AAGTATGGCTGACATTATGTAAAAAGAAAAATACAAATGGCTTTCTAGTAACCAAATAAGATGTACACATGAACTTCAGAAAT-ATCCTATTGATTCGTAGAGAC---TTTCTTTTTATTTTACAATAATT-AAAaacagtaattaacaatttattgagtacttactttatgccaggctctgttctcaggattaatcatgcaataa--ctca-agaatccata i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87987281 337 - 181584905 TTAAGCATAGATTTTA----------TGTCATTCTCTCATCACATACCAAAAAACTCAGCAGTTGTGCTA----------------ACATAATAAATGTT-GAAGTAAGAAAGACAGGGAGAC-AAATGG---GGGAAAAA-AGAGAATACAAA-AAGTATGGCTGACATTATGTAAAAAGAAAAATACAAATGGCTTTCTAGTAACCAAATAAGATGTACACATGAACTTCAGAAAT-ATCCTATTGATTCGTAGAGAC---TTTCTTTTTATTTTACAATAATT-AAAaacagtaattaacaatttattgagtacttactttatgccaggctctgttctcaggattaatcatgcaataa--ctca-agaatccata i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1213922 337 - 8785636 TTAAGCATAGATTTTA----------TGTCATTCTCTCATCACATACCAAAAAACTCAGCAGTTGTGCTA----------------ACATAATAAATGTT-GAAGTAAGAAAGACAGGGAGAC-AAATGG---GGGAAAAA-AGAGAATACAAA-AAGTATGGCTGACATTATGTAAAAAGAAAAATACAAATGGCTTTCTAATAACCAAATAAGATGTACACATGAACTTCAGAAAT-ATCCTATTGATTCGTAGAGAC---TTTCTTTTTATTTTACAATAATT-AAAaacagtaattaacaatttattgagtacttactttatgccaggctctgttctcaggattaatcatgcaataa--ctca-agaatccata i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1677581 338 + 27333823 TTAAGCATAGATTTTA----------TGTCATTCTCTCATCACGTACCAAAAAACTCAGCAGTTGTGCTA----------------ACATAATAAATGTT-GAAGTAAGAAAGACAGGGAGAC-AAATGG---GGGAAAAA-AGAGAATACAAA-AAGTATGGCTGACATTATGTAAAAAGAAAAATACAAATGGCTTTCTAGTAACCAAATAAGATGTACACATGAACTTCAGAAAT-ATCCTATTGATTCATAGAGAC---TTTCTTTATATTTTACAATAATT-AAAaacagtaattaacaatttattgagtacttactttatgccaggctctgttctcaggattaatcatgcaataa--ctcacagaatccata i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1947217 338 - 91010382 TTAAGCATAGATTTTA----------TGTCATTCTCTCATCACGTTCCAAAAAACTCAGCAGTTGTGCTA----------------ATATAATAAATGTT-GAAGTAAGAAAGACAGGGAGAC-AAATGG---GGAAAAAA-AGAGAATACAAA-AAGTATGGCTGACATTATGTAAAAAGAAAAATACAAATTGCTTTCTAGTAACCAAATAAGATGTACACATGAACTTCAGAAAT-ATCCTATTGATTTGTAGAGAT---TTTCTTTTTATTTTACAATAATT-AAAaacagtaattaacaatttattgagtacttactttatgccatgctctgttctcaggactaatcatgcaataa--ctcacagaatccata i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2066666 338 + 5179401 TTAAGCATAGATTTTA----------TGTCATTCTCTCATCACGTACCAAAAAACTCAGCAGTTGTGCTA----------------ACATAATAAATGTT-GAAGTAAGAAAGACAGGGAGAC-AAATGG---GGGAAAAA-AGAGAATACAAA-AAGTATGGCTGACATTATGTAAAAAGAAAAATACAAATGGCTTTCTAGTAACCAAATAAGATGTACACATGAACTTCAGAAAT-ATCCTATTGATTCGTAGAGAC---TTTCTTTTTATTTTACAATAATT-AAAaacagtaattaacaatttattgagtacttactttatgccaggctctgttctcaggattaatcatgcaataa--ctcacagaatccata i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7768668 339 - 21726897 TTAAGCATAGATTTTA----------TGTCATTCTCTCATCACGTACCAAAAAACTCAGCAGTTGTGCTA----------------ATATAATAAATGTT-GAAGTAAGAAAGACAGGGAGAC-AAATGG---GGAAAAAA-AGAGAATACAAA-AAGTATGGCTGACATTATGTAAAAAGAAAAATACAAATGGCTTTCTAGTAACCAAATAAGATGTACACATGAACTTCATAAAT-ATCCTATTGATTTGTAGAGAC---TTTCTTTTTATTGTACAATAATTAAAAaacagtaattaacaatttatcgagtacttactttataccaggctctgttctcaggactaatcatgcaataa--ctcacagaatccata i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112585468 330 + 204313951 TTAAACATAGATCTTA----------TGTCATTCTCTTACCACATA----------TAGCAGTTGGGCCAAT--------------ATGTAATAAATGTT-GAAGTAAGGAAGACAGGGAGAC-AAATGG--AACAAAAAA-AGAGAATATAAA-AAGTATGGCTAACATTATGTAAGAAGAAAAATACAAATGGTTTTCTAGTAACCAAATAAGATATACACATGAACTTCACATAT-ACCCTATTGATCTGTAGAGAC---TTTA-TTTTACTTTAGAATAATT-AAAaatagtaattaacaatttattgagtacttactttatgctagcctctgttctccagactactcatgaaataa--ctcacagaatctata i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45036766 343 + 71252344 TTAAGCATAGGCCTTA----------TGTCATTCTCTTACCACATACCAAAAAACTTAGCAGTTGTGCCAATA-------------ATGTAATAAATGTT-GAAGTAAGGAAGACAGGGAGAC-AAATGG--AACAAAAAAGAGAGAATACAAG-AAGTATGGCTAATACTATGTAAGAAGAAAAATACAAATGGCTTTCTAGTAACCAAGTAAGATGTACACATGAACTTCATATAC-ACCCTCTTGATCTGTAGAGAC---TTTATTTTTACTTTAGAATAATT-AAAaatagtaattaacaatttattgagtgcttactttacgctagcctctgttctcaggaatactcatgaaataa--ctcacagaatccata i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 397008 341 - 1393929 TTAAGCATAGATCTTA----------TGTCATTCTCTTTCCATATACCAAAGAACTTAGCAGTTGTGCCAATA-------------ATGTAATAAATGTT-GAAGTAAGGAAGACAGGGAGAC-AAATGG--AAAAAAGAG-AGAGAATATAAC-AAGTATGGCTAATATTATGTAAGAAGAAAAATACAAATGGCTTTCTAGTAGCCAAGTAAGATGTACACATGAACTTCATATAC-ACCGTCTTGATCTGTAGAGAC---TTTT-TTTTACTTTAGAATAATT-AAAaatagtaattaacaatttattgagtacttactttatgctagcctctgttctcaggactactcatgaaataa--gccacagaatccata i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1468801 342 - 15889662 TTAAGCATAGATCTTA----------TGTCATTCTCCTACTACATACCAAAAAACTTAGCAGTTGTGCCAATA-------------ATGTAATAAATGTT-GAAGTAAGGAAGACAGGGAGAC-AAATGA--AAAAAAAAA-AGGGAATACAAG-AAGTATGGCTAACATCGTGTAAGAAGAAAAATACAAATGGCTTTCTAGTAACCAAATAAGATGTACACATGAACTTCATATAT-ACCCTATTGATCTGTAGAGAC---TTTATTTTTACCTTAGAATAATT-AAAaatagtaatgaacaatttgttgagtacttactttatgctagcctctgttctcaggactactcataaaataa--ctcacagaatccata i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84860622 359 + 108143057 TTAAGCATAGATC-TA----------TGTCATTCCTCC-TCACTCACCAAA-ATCTTAGCAGTTGTACTAATGATATCATCCAATCATGTAGTAAATGTC-GAAGTAAGGAAGACAGGGAGACGAAATGGGAAAAAATAAA-GCAGAATGCAAAAAAGCACGGCTAACATTGTGCAAGTAGAAAAATACAAGTGGCTTTCTAATAACCAAATAAAAGGTATACATGAACTTAGTAAAT-ATCGTATTAATTTGTAGAGGTAAACTTACTTTTATTTTAGAATAATT-AAAaataatgattaataacttattggttgcttactttatgccaggctctgtcctcagtattgttcatgaaataa--ctcacagaatccata i micMur3.chr12 I 36 I 1083 s otoGar3.GL873536 1357769 330 - 29863360 TTAAGCATAGACC-TA----------TGTCATTCTCTC-CTCTTCACCAGA-AACTTAGCAGTCATGCTAATAATATAACCCAATCTTGTAATAAATGTT-GAAGTAAGAA----AGGGACACAAAATAGGAGAAAATAAA-ACAGAACACAAA----------------CGTGTAAGCAGAACAGTA-AAGTGTCTTCCTGACAACCCAGTACAGGGTAAATGCAAACTTATT--CT-ATCCTATTCCTTGGTAGAGGC---TTTCTTTTTATTTAAGCAtcatt---aaacaataattaac-atttattgggtgcttactttttgccagactctgttctcagtacaatctatgaaataa--ctcacagaatctgca i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14353160 341 + 91889043 TTAAGCATGAATCTTGACTTAAGTATAGCCATTTTCTCCTCACCCA-----AAACTTAACATTTGTCCCAATA-------------ATATAATAAGTGCTAGAGATAAGAAAGACAGGGGGAC-AGAATA---GGAAAAAA-AGAAAGAATCCA-ATGTATAGCTAACACAATAGAGGTAGAAAAATACAAATGGCTTTCTAATAACTAAGTAAAATGTGTACATGAACTTAGTAAATAATACTGTTGGTTTGTAGACTT---TTTTTTTGTATTTTAGATTAATT-AAAaatggtaactgacagtttattgagtgcttactttacatctggttctgttctc---------catgaaaaaaacctctcagaatccaca i canFam3.chr3 C 0 C 0 a score=1161545.000000 s hg38.chr5_GL383530v1_alt 96393 111 + 101241 cagcaaccttatgaaggaggtctgagggga--gtccccatttta-catgtgaattacgctgtgaggcaagggagctgaagtagtttgccaaaggtcacacacctagtaagtagg s panTro5.chr5 20330346 111 + 181907262 cagcaaccttatgaaggaggtctgagggga--gtccccatttta-catgtgaattacgctgtgaggcaagggagctgaagtcgtttgccaaaggtcacacacctagtaagtagg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20342534 111 + 183735486 cagcaaccttatgaaggaggtctgagggga--gtccccatttta-catgtgaattacgctgtgaggcaagggagctgaagtagtttgccaaaggtcacacacctagtaagtagg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4829185 109 - 13748885 cagcaaccttatgaaggaggtctgagggga--gtccccatttta-catgtgaattacgctgtga-gcaagggagctgaagtagtttgcc-aaggtcacacacctagtaagtagg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53858509 111 - 163208435 cagcaaccttatgaaggaggtctgagggga--gtccccatttta-catgtgaattacgctgtgaggcaagggagctgaagtagtttgccaaaggtcacacacctagtaagtagg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87882162 111 - 180051392 cagcaaccttatgaaggaggtctgagggga--gtcgccatttta-catgtgaattacagtgtgaggcaagggagctgaagtagtttgccaaaggtcacacacctagtaagtagg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87987618 111 - 181584905 cagcaaccttatgaaggaggtctgagggga--gtcaccatttta-catgtgaattacagtgtgaggcaagggagctgaagtagtttgccaaaggtcacacacctagtaagtagg i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1214259 111 - 8785636 cagcaaccttatgaaggaggtctgagggga--gtcgccatttta-catgtgaattacagtgtgaggcaagggagctgaagtagtttgccaaaggtcacacacctagtaagtagg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1677919 111 + 27333823 cagcaaccttatgaaggaggtctgagggga--gtcgccatttta-catgtgaattacagtgtgaggcaagggagctgaagtagtttgccaaaggtcacacacctagtaagtagg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1947555 111 - 91010382 cagcaaccttatgaaggaggtctgagggga--gtcgccatttta-catgtgaattacagtgtgaggcaagggagctgaagtagtttgccaaaggtcacacacctagtaagtagg i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2067004 111 + 5179401 cagcaaccttatgaaggaggtctgagggga--gtcgccatttta-catgtgaattacagtgtgaggcaagggagctgaagtagtttgccaaaggtcacacacctagtaagtagg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7769007 111 - 21726897 cagcaaccttatgaaggaggtctgagggga--gtcgccatttta-cacgtgaattacaccatgaggcaagggagctgaagtagtttgccaaaggtcacacacctagtaagtagg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112585798 110 + 204313951 cagcaaccttacaaaggaggttcgagtgga--attcccatttta-catgtgaattacatt-tgagtagagagagctgaagtagttttccaaagatcacacagctaataagttgg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45037109 110 + 71252344 cagcaaccttacgaaggaggtttgagggga--attcccatttta-tatgtgaattacatt-tgagtagagagagctgaagtagttttccaaagatcacacagctagtaagttga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 397349 110 - 1393929 cagcaaccttacaaaggaggtttgagggga--attcccatttta-tatgtgaattacatt-tgagtagagagagctgaagtagttttccaaagatcacacagctagtaagttgg i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1469143 111 - 15889662 cagcaaccttacaaagaaggtttgagggga--attcctattttaccatgtgaattacatt-tgagtagagagagctgaagtagttttccaaagatcatacagctagtaagttgg i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1358099 107 - 29863360 -aacaagcttataaagcaagtatcagacca--gttcccctttta-catgtgaatta---tgtgaggcaagggaggtgaagtaatttgcctaagatcacgctgatactaagcatt i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14353501 103 + 91889043 caacaacctt------gaggtccactggaactgtccccatgttg-cataggaattgaa---ggtgactggagagatgaagcag-ttacctaaggccaccatgtttgtaaataag i canFam3.chr3 C 0 I 1321 e micMur3.chr12 84860981 1083 + 108143057 I a score=187448.000000 s hg38.chr5_GL383530v1_alt 96504 17 + 101241 ggaac--agattcaaacAA s panTro5.chr5 20330457 17 + 181907262 ggaac--agattcaaacAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20342645 17 + 183735486 ggaac--agattcaaacAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4829294 16 - 13748885 ggaa---agattcaaacAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53858620 17 - 163208435 ggaac--agattcaaacAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87882273 17 - 180051392 ggaac--agattcaaacAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87987729 17 - 181584905 ggaac--agattcaaacAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1214370 17 - 8785636 ggaac--agattcaaacAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1678030 17 + 27333823 ggaac--agattcaaacAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1947666 17 - 91010382 ggaac--agattcaaacAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2067115 17 + 5179401 ggaac--agattcaaacAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7769118 17 - 21726897 ggaac--aggttcaaacAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112585908 17 + 204313951 ggaag--agattcaaacAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45037219 17 + 71252344 ggaag--agattcaaacAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 397459 17 - 1393929 ggaag--agattcaaacAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1469254 17 - 15889662 ggaag--agattcaaacAA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1358206 19 - 29863360 ggaacaaagattcaaataa i otoGar3.GL873536 C 0 I 2097 e canFam3.chr3 14353604 1321 + 91889043 I e micMur3.chr12 84860981 1083 + 108143057 I a score=22920.000000 s hg38.chr5_GL383530v1_alt 96521 2 + 101241 GA s panTro5.chr5 20330474 2 + 181907262 GA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20342662 2 + 183735486 GA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4829310 2 - 13748885 GA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53858637 2 - 163208435 GA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87882290 2 - 180051392 GA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87987746 2 - 181584905 GA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1214387 2 - 8785636 GA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1678047 2 + 27333823 GA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1947683 2 - 91010382 GA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2067132 2 + 5179401 GA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7769135 2 - 21726897 GA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112585925 2 + 204313951 GA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45037236 2 + 71252344 GA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 397476 2 - 1393929 GA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1469271 2 - 15889662 GA i aotNan1.NW_018506370v1 C 0 C 0 e canFam3.chr3 14353604 1321 + 91889043 I e micMur3.chr12 84860981 1083 + 108143057 I e otoGar3.GL873536 1358225 2097 - 29863360 I a score=152986.000000 s hg38.chr5_GL383530v1_alt 96523 12 + 101241 atgagacagaca s panTro5.chr5 20330476 12 + 181907262 atgagacagaca i panTro5.chr5 C 0 C 0 s panPan2.chr5 20342664 12 + 183735486 atgagacagaca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4829312 12 - 13748885 atgagacagaca i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53858639 12 - 163208435 ATGAGACAGACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87882292 12 - 180051392 atgagacagaca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87987748 12 - 181584905 atgagacagaca i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1214389 12 - 8785636 atgagacagaca i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1678049 12 + 27333823 atgagacagaca i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1947685 12 - 91010382 atgagacagaca i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2067134 12 + 5179401 atgagacagaca i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7769137 12 - 21726897 atgagacagaca i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112585927 12 + 204313951 ATGAGACAGAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45037238 12 + 71252344 atgagacagaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 397478 12 - 1393929 atgagacagaaa i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1469273 12 - 15889662 atgagacagaaa i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84862064 12 + 108143057 atgagacagata i micMur3.chr12 I 1083 C 0 s otoGar3.GL873536 1360322 12 - 29863360 atggtacagata i otoGar3.GL873536 I 2097 C 0 e canFam3.chr3 14353604 1321 + 91889043 I a score=2324246.000000 s hg38.chr5_GL383530v1_alt 96535 187 + 101241 ttttctg-ttatttttcacatgcaaaaatgtctctattctacctcaccatttgattaataattctgggctaagaaataatttcttttagaatttgaaggcttg-ttcttataacttttaacttgtaatatttttttgagaaatctaagccattttgatttctcattctttgcatatggctagtttttgg- s panTro5.chr5 20330488 187 + 181907262 ttttctg-ttatttttcacatgcaaaaatgtccctattctacctcaccatttgattaataattctgggctaagaaataatttcttttagaatttgaaggcttg-ttcttataatttttaacttgtaatatttttttgagaaatctaagccattttgatttctcattctttgcatatggctagtttttgg- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20342676 187 + 183735486 ttttctg-ttatttttcacatgcaaaaatgtccctattctacctcaccatttgattaataattctgggctaagaaataatttcttttagaatttgaaggcttg-ttcttataacttttaacttgtaatatttttttgagaaatctaagccattttgatttctcattctttgcatatggctagtttttgg- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4829324 185 - 13748885 ttttctg-ttatttttcacatgcaaaaatgtctctattctacctcaccatttgattagtaattctgggctaagaaataatttcttttagaatttgaaggcttg-ttcttataacttttaacttgtaatatttttttgag--atctaagccattttgatttctcattctttgcatatggctagtttttgg- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53858651 186 - 163208435 TTTTCCG-TTATTTTTCACATGCAaaaatgtctctattctacctcaccatttgattaataattctgggctaagaaataatttctcttagaatttgaaggcttg-ttcttataacttttaacttctaatatttttttgagaaatctaagccattttgatttctcattatttgcatatggctagttttc-t- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87882304 186 - 180051392 ttttctg-ttatttttcacatgcaaaaatgtctctattctaccctgccatttgattaataattctgggctaagaaataatttctcttagaatttgaaggcttg-ttcttataacttttaacttctaggatttctttgagaaatctaagccattttcatttctcattctttgtatatggctagtttttg-- i rheMac8.chr6 C 0 I 2075 s macFas5.chr6 87987760 186 - 181584905 ttttctg-ttatttttcacatgcaaaaatgtctctattctaccctgccatttgattaataattctgggctaagaaataatttcccttagaatttgaaggcttg-ttcttataacttttaacttctaggatttctttgagaaatctaagccattttcatttctcattctttgtatatggctagtttttg-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1214401 186 - 8785636 ttttctg-ttatttttcacatgcaaaaatgtctctattctaccctgccatttgatgaataattctgggctaagaaataatttctcttagaatttgaaggcttg-ttcttataacttttaacttctaggatttctttgagaaatctaagccattttcatttctcattctttgtatatggctagtttttg-- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1678061 186 + 27333823 ttttctg-ttatttttcacatgcaaaaatgtctctattctaccctgccatttgattaataattctgggctaagaaataatttctcttagaatttgaaggcttg-ttcttataacttttaacctctaggatttctttgagaaatctaagccattttcatttctcattctttgtatatggctagtttttg-- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1947697 186 - 91010382 ttttctg-ttatttttcacatgcaaaaatgtctctattctaccccgccatttgattaataattctgggctaagaaaaaatttctcttagaatttgaaggcttg-ttcctataacttttaacttctaggatttctttgagaaatctaagccattttgatttctcattctttgtatatggctagtttttg-- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2067146 186 + 5179401 ttttctg-ttatttttcacatgcaaaaatgtctctattctaccctgccatttgattaataattctgggctaagaaataatttctcttagaatttgaaggcttg-ttcttataacttttaacttctaggatttctttgagaaatctaagccattttcatttctcattctttgtatatggctagtttttg-- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7769149 186 - 21726897 ttttctg-ttatttttcacatgcaaaaatgtctctattctaccccgccatttgattaataattctgggctaagaaataatttctcttagagtttgaaggcttg-ttcttataacttttaacttctaggatttctttgagaaatctaagccattttgatttctcattctttgtatatggctagtttttg-- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112585939 183 + 204313951 TTTT----TTATTTTTCACATGCAAAAATATCTGTATTCTACACCACCGTTTGATTAATaattctgggctaagaaataatttctcttagaatttgaaggcttg-ttcttataacttttaacttctaatatttctttgagaagtctaagccattttgatttcttattctttctatatggccagtttttg-- i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 45037250 187 + 71252344 ttttctggttttctttcacatgcaaaaatgtctgtattctatgccactgtttgattaataattctgggctaagaaataatttctctcagaatttgaaggcttg-ttcttataacttttaacttctaatatttctttgagaagtctaagtcattttgatttcttattctttctatatggccagtttttg-- i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107830v1 397490 186 - 1393929 ttttctg-ttatttttcacatgcaaaaatgtctgtattctatgccaccgtttgattaataactctgggctaagaaatgatttctcttagaatttgaaagcttg-tttttaaaacttttaacttctaatatttctttgagaagtctaagccattttgatttcttattctttctatatggccagtttttg-- i cebCap1.NW_016107830v1 C 0 I 1 s aotNan1.NW_018506370v1 1469285 185 - 15889662 ttttctg-ttatttttcacatgcaaaaatgtctgtattctatgccaccatttgattaataattctgggctaagaaataatttctcttagaatttgaaggctta-ttcttacaacttttaacttc-aatatttctttgagaagtctaagccattttgatttcttattctttctatatggccagtttttg-- i aotNan1.NW_018506370v1 C 0 I 1 s micMur3.chr12 84862076 181 + 108143057 ttttctg-ttagttttcacatacaaaaatgtctgtattctacct---ca-ttggttaatagttctgggctaagaaataatttctcttaaaatttgaaggcttg-ttcttttaactcttaatttctaatatttctttgagaaatttaagctattctgatttctaactctttctatgtggccagttttg--- i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1360334 180 - 29863360 ttttctg-ttacttttcacatacaaaaatttctgtattatacatttcca-ttaattgttagttctgggctaagaaataatttctcttaaaattggaaggcttg-ttc---taacttttaa-ttctaatagttctttaagaaattcaagctattctgacttctaactctttgtatatggccaatttta--- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14354925 177 + 91889043 ttttctc-ctacttttcacatacaaaaatgtctcagctat-------tgcatggttaatagttctggtccaaggaatagtt----ttaaaatttgaagacgtgattcttttgacttctagcttctaatatttctttgagaaattcaagccattttggtttctgattctctgtacttgacctgattttg-c i canFam3.chr3 I 1321 C 0 a score=5109392.000000 s hg38.chr5_GL383530v1_alt 96722 430 + 101241 ttcttgggtttagtatcttttcattatctctgattttgaaattttatgataatgagcattaataattaatacgggttttg-aaaaaaa---tgtgctggacagttgatgggccattttatatgatacatggtcttcattttggggaaggtttattttcgtcctcttttgatcccatcattatccctctgatttctctttggagcatgcatttattcattcaacaa--atagttatcatgcccctc-------cccta-gcaaggcattgtaattctgtgctagaggtaatagcagtgaac-aaaacattgcc------------ctcatggagccaattt----gatattgggccttcttgattgaccctttaa-----ttagcttgtttttcctg--tagtccatcct---ttcaactactttatattattttctgaaatatttccttggctttttcttccatttcttta- s panTro5.chr5 20330675 427 + 181907262 ttcttgggtttagtatcttttcattatctctgattttgaaattttatgataatgagcattaa----taatacgggttttgaaaaaaaa---tatgctggacagttgataggccattttatatgatatatggtcttcattttggggaaggtttattttcttcctcttttgatcccatcattatccctctgatttctctttggagcatgcatttattcattcaacaa--atagttatcatgcccctc-------cccta-gcaaggcattgtaattctgtgctagaggtaatagcagtgaac-aaaacattgcc------------ctcatggagccaattt----gatattgggccttcttgattgaccctttaa-----ttagcttgtttttcctg--tagtccatcct---ttcaactactttatattattttctgaaatatttccttggctttttcttccatttcttta- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20342863 426 + 183735486 ttcttgggtttagtatcttttcattatctctgattttgaaattttatgataatgagcattaa----taatacgggttttg-aaaaaaa---tgtgctggacagttgataggccattttatatgatacatggtcttcattttggggaaggtttattttcttcctcttttgatcccatcattatccctctgatttctctttggagcatgcatttattcattcaacaa--atagttatcatgcccctc-------cccta-gcaaggcattgtaattctgtgctagaggtaatagcagtgaac-aaaacattgcc------------ctcatggagccaattt----gatattgggccttcttgattgaccctttaa-----ttagcttgtttttcctg--tagtccatcct---ttcaactactttatattattttctgaaatatttccttggctttttcttccatttcttta- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4829509 429 - 13748885 ttcttgggtttagtatcttttcattatctctgattttgaaa-tttatgataatgagcattaataattaatacgggttttt-aaaaaaa---tgtgctggacagttgatgggccattttatatgatacatggtcttcattttggggaaggtttattttcttcctcttttgatcccatcattacccctctgatttctctttggagcatgcatttattcattcaacaa--atagttatcatgcccctc-------cccta-gcaaggtattgtaattctgtgctagaggtaatagcagtgaac-aaaacattgcc------------cttatggagccaattt----gatattgggccttcttgattgaccctttaa-----ttagcttgtttttcctg--tagtccatcct---tacaactactttatattattttctgaaatatttccttggctttctcttccatttctgta- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53858837 429 - 163208435 ttcttgggcttagtatcttttcattatctctgattttgaaattttatgatgatgagcattaataattaatatgggttttt-aaaaaaa---tatgctggacagttgatgggccattttgtataatacatggtcttcattttggggaaggtttgttttcttcctcttttggtcccatcattatccctctgttttctctttggagcatgcatttattcattcaacaa--atagttatcatgcccctc-------tcctt-gcaaggcattgtaattctgtgctacaggtaatagcagtgaac-aaaacattgcc------------ctcctggagccaattt-----atattgggccttcttgattgaccctttaa-----ttagcttgtttttcctg--tagtccatcct---ttcaactactttatattattttctgaaatatttccttggctttctcttccatttctgta- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87884565 429 - 180051392 ttcttgggtttagtatcttttcgttatctctgattttgaaattttatggtaatgaacattaataattaatacgggtttt--aaaaaaa---tgtgccggagagttgatgggccattttatctgatatctggtcttcatttttgggaaggtttattttcttcttcttttggtcccatcattctctctccgttttctctttggagcattcatttattcattcaacaa--atagttatcatgcccctc-------cccta-gcaaggcgttgtaattctgtgctagaggtaatagcagtgaac-aaaacattgcc------------ctcatggagccaattt----gatattgagccttcttgattgagcctttaa-----ttagcttatttttcctg--tagtccatcct---ttcaactactttatattattttctgaaatatttccttggctttctcttccatttctgta- i rheMac8.chr6 I 2075 C 0 s macFas5.chr6 87987946 429 - 181584905 ttcttgggtttagtatcttttcgttatctctgattttgaaattttatggtaatgaacattaataattaatacgggtttt--aaaaaaa---tgtgccggagagttgatgggccattttatctgatatatggtcttcatttttgggaaggtttattttcttcttcttttggtcccatcattctctctccgttttctctttGGAGCATTCatttattcattcaacaa--atagttatcatgcccctc-------cccta-gcaaggcgttgtaattctgtgctagaggtaatagcagtgaac-aaaacattgcc------------ctcatggagcCAATTT----gatattgagccttcttgattgagcctttaa-----ttagcttatttttcctg--tagtccatcct---ttcaactactttatattattttctgaaatatttccttggctttctcttccatttctgta- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1214587 429 - 8785636 ttcttgggtttagtatcttttcgttatctctgattttgaaattttatggtaatgaacattaataattaatacgggtttt--aaaaaaa---tgtgccggagagttgatgggccattttatctgatatatggtcttcatttttgggaaggtttattttcttcttcttttggtcccatcattctctctccgttttctctttggagcattcatttattcattcaacaa--atagttatcatgcccctc-------cccta-gcaaggcgttgtaattctgtgctagaggtaatagcagtgaac-aaaacattgcc------------ctcatggagccaattt----gatattgagccttcttgattgagcctttaa-----ttagcttatttttcctg--tagtccatcct---ttcaactactttatattattttctgaaatattttcttggctttctcttccatttctgta- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1678247 429 + 27333823 ttcttgggtttagtatcttttcgttatctctgattttgaaattttatggtaatgagcattaataattaatatgggtttt--aaaaaaa---tgtgccggagagttgatgggccattttatctgatacatggtcttcatttttgggaaggtttattttcttcttcttttggtcccatcattctctctccgttttctctttggagcattcatttattcattcaacaa--atagttatcatgcccctc-------cccta-gcaaggcgttgtaattctgtgctagaggtaatagcagtgaac-aaaacattgcc------------ctcatggagccaattt----gatattgagccttcttgattgagcctttaa-----ttagcttatttttcctg--tagtccatcct---ttcaactactttatattattttctgaaatatttccttggctttctcttccatttctgta- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1947883 429 - 91010382 ttcttgggtttagtatcttttcattatctctgattttgaaattttatggtaatgagcattaataattaatacgggtttt--taaaaaa---tgtgctggagagttgatgggccattttatctgatacatagtcttcatttttgggaaggtttattttcttcttcttttggtcccatcattctctctccgttttctctttGGAGCATTCatttattcattcaacaa--atagttatcatgcccctc-------cccta-gcaaggcgttgtaattctgtgctagaggtaatagcagtgaac-aaaacattgcc------------ctcatggagcCAATTT----gatattgggccttcttgattgagcctttaa-----ttagcttatttttcctg--tagtccatcct---ttcaactactttatattattttctaaaatatttccttggctttctctgccatttctgta- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2067332 429 + 5179401 ttcttgggtttagtatcttttcgttatctctgattttgaaattttatggtaatgagcattaataattaatacgggtttt--aaaaaaa---tgtgccggagagttgatgggccattttatctgatacatggtcttcatttttgggaaggtttattttcttcttcttttggtcccatcattctctctccgttttctctttggagcattcatttattcattcaacaa--atagttatcatgcccctc-------cccta-gcaaggcgttgtaattctgtgctagaggtaatagcagtgaac-aaaacattgcc------------ctcatggagccaattt----gatattgagccttcttgattgagcctttaa-----ttagcttatttttcctg--tagtccatcct---ttcaactactttatattattttctgaaatatttccttggctttctcttccatttctgta- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7769335 430 - 21726897 ttcttgggtttaatatcttttcgttttctctgattttgaaattttatggtaatgagcattaataattaatacgggtttt--taaaaaa---tgtgctggagagttgatgggccattttatctgatacatggtcttcatttttgggaaggtttattttcttcttcttttggtcccatcattctctctctgttttctctttggagcattcatgtattcattcaacaa--atagttatcatgcccctc-------cccta-gcaaggcattgtaattctgtgctagaggtaatagcagtgaacaaaaacattgcc------------ctcatggagccaattt----gatattgggcgttcttgattgagcctttaa-----ttagcttatttttcctg--tagtccatcct---ttcagctgctttatattattttctgaaatatttccttggctttcccttccatttctgta- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112586123 416 + 204313951 -ttctgggtttagtatctttttgttttccctgattttgaaattttatgataatgagtgttaataattaatatggatttt--taaaaaa---tgtgctggacatttgatgggccattttatatgatacatggtcttcattttggggaaggtttattttcttcttcttttggtcccatcgttctctctttgttttctctttggagcactcatttattcattcaacaa--gtagtt---atgcccctc-------ctcta-gcaagacattgtaattctgtgctagaggtaacagcagtgaac-aaatcattgcc------------ctcttggagcCAGTTT----gatactgggccttcttgattgagcctttaattatcttagcttatttttcctg--tagtccattct---ttcaattactttat--------------tatttccccagctttctcttccatttctgta- i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 45037438 424 + 71252344 -ttctgggtttagtatctttttgttttccctgattttgaaattttatgataatgagcattattaat---------tttt--ttaaaat---tgtgctggacatttgatggaccattttatatgatacatggtcttcattttggggaaggtttattttcttcttcttttggtcccatcattatctttctgttttctctttggagtactcatttattcattcaacaa--atagttaccatgcccctc-------ctcta-gcaaggcattgtaattctgtgctagaggtaacagcagtgaac-aaaacattgcc------------ctcttggagccaattt----gatactgtgccttcttgattgagcctttagttaccttagcttatttttcctg--tagtctatcct---ttcaattactttatattattttctgaaagatttccctggctttctcttccatttctgta- i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107830v1 397677 433 - 1393929 -ttctgggtttagtatctttttgttttccctgattctgaaattttataataataaacattaataattaatatggatttt--ttaaaaa---tgtgctggacatttgatgggccattttatatgatacatggtcgtcattttggggaaggtttattttcttcttcttttgttcccattgttatctttctgttttctctttggagcattcatttattaattcaacaa--atagttatcatgcccctc-------ctcta-gcaaagcattataattctgtgctagaggtaacagcagtgaac-aaaacattgct------------ctcttggagccaattt----gatactgggccttcatgattgagcctttaattatcttagcttatttttcctg--tagtccatcct---ttcaattactttatattattttctgaaatatttccccagctttctcctccatttctgta- i cebCap1.NW_016107830v1 I 1 C 0 s aotNan1.NW_018506370v1 1469471 433 - 15889662 -ttctgggtttagtatctttttgttttccctgattttgaaattttatgataatgagcattaataattaatatggatttt--ttaaaaa---cgtgctggacatttgatggaccattttatatgctacatggtcttcattttggggaaggtttattttctttttcttttggtcccatcgttatctctctgttttctctttggagcactcatttattcattcaacaa--gtagttatcatgcccctc-------ctcta-gcaaggcattgtaattctgtgctagaggtaacagcagtgaac-aaaacattgcc------------ctcttggagccaattt----gatactgggccttcttgattgagcctttaattatcttagcttatttttcctg--gattccatcct---ttcaattactttatattattttctgaaatatttccccggctttctcttccatttctgta- i aotNan1.NW_018506370v1 I 1 C 0 s micMur3.chr12 84862257 435 + 108143057 cccttgggtttaggatcttttctttatccctgagtttgaaatttcatgacaatgagcattga-------tatgggcttt--aaaaaaaaattgttttggacacttggtgagccacttcacatgatacatgttcttcatttaggggaaggtttgttttcttcttctttcggtcccatccctatctctatgttctctctttggagcactcat-tgctcacttaacaa--atagttattgtgccattc-------ctctgtgccaggcattgtaatcctgtactagaaggtacagcagtgaac-aaaacactgcc------------ctcatggatctaattaatcagatattgggccttatttattaaacc-ctaattttcttaatttatttttcctgtctagtctatcat---ttcaattaatttattctactttctgaaagatttctctggttttatcttccaattctgta- i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1360514 433 - 29863360 atcttggccttaggatc-tttctttatccataattttgaaatttcatgttaatgaa--------------atgggtttt--taaaaaaaattgtgctgggcacttggt--gctgtttcacatgacacatattcttcacttcggggaagatttgttttcttcttcctttggtcccaccactatctctatgctctctctttggaacactcac-tgttcagtcaacaa--atagttactatgctattatgctatgctctgtgtcagacactgtgattctgtgctagaaggcacagctacgaacaaaaacacgggccaattaatggagctcatggAGCCAATTTATCAGATTTTGGGCCTTCTTGATTAATCC-CTAATTTTCTTAATTTATTTCTTCTG--TAATCTATCCT---TTCAACTA---------TCTTTCTGAAAGATTCCCCTGGTTTTATCTTCT-ATTCTGTA- i otoGar3.GL873536 C 0 I 143 s canFam3.chr3 14355102 421 + 91889043 --tcttggtttaggatttttactttatctctgattctgaaatttcatgatcatgggcatcggtg-----tgaagatttt--tcatagt---tgggctcattggtttgtgggccatttcacatgatggatgctcttcatctttggaaa----tgttccgttcttcttttgcttctattgctagctctctg--ttccctttggaacattcacttatttgttcaacaaatatagttattaagcatctt-------ctctgtgccaggcattgggatgctgtgctggaggtggcagcagtg----aaagcattgtt------------ctcactgagcaagttagtcagacattgggccttctcaactgagcctttaa-----tt---ttctttttattg--tattcctcctttggttcatctactttgctctgttttctgaaagatgtctattgctttgtattccagatctccta i canFam3.chr3 C 0 C 0 a score=1261112.000000 s hg38.chr5_GL383530v1_alt 97152 103 + 101241 actgatttatttttaatttcagttctttcatttttaatttccaattactctttcttgttctctgatt--------------------------------tgtttcttatctctctctgagaaaattaattgttgc s panTro5.chr5 20331102 102 + 181907262 actgatttatttttaatttcagttctttcatttttaatttccaattactctttcttgttctctga-t--------------------------------tgtttcttatctctctctgagaaaattaattgttgc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20343289 102 + 183735486 actgatttatttttaatttcagttctttcatttttaatttccaattactctttcttgttctctga-t--------------------------------tgtttcttatctctctctgagaaaattaattgttgc i panPan2.chr5 C 0 I 2 s gorGor5.CYUI01014999v1 4829938 102 - 13748885 actgatttatttttaatttcagttctttcatttttaatttccaattactctttcttgttctctga-t--------------------------------tgtttcttatctctctctgagaaaattaattgttgc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53859266 102 - 163208435 actgatttatttttaatttcagttctttcatttttaatttccaattactctttcttgttctctga-t--------------------------------tgtttcttatctctctctgagaaaatgaattgttgc i nomLeu3.chr2 C 0 I 2 s rheMac8.chr6 87884994 102 - 180051392 actgatttatttttaacttcagttctttcatttttaatttccaattactctttcttgttctctga-t--------------------------------tgcttcttatctctctctgagaaaattaatagttgc i rheMac8.chr6 C 0 I 2 s macFas5.chr6 87988375 102 - 181584905 actgatttatttttaacttcagttctttcatttttaatttccaattactctttcttgttctctga-t--------------------------------tgcttcttatctctctctgagaaaattaatagttgc i macFas5.chr6 C 0 I 2 s macNem1.NW_012011400v1 1215016 102 - 8785636 actgatttatttttaacttcagttctttcatttttaatttccaattactctttcttgttctctga-t--------------------------------tgcttcttatctctctctgagaaaattaatagttgc i macNem1.NW_012011400v1 C 0 I 2 s cerAty1.NW_012002401v1 1678676 102 + 27333823 actgatttatttttaacttcagttctttcatttttaatttccaattactctttcttgttctctga-t--------------------------------tgcttcttatctctctctgagaaaattaatagttgc i cerAty1.NW_012002401v1 C 0 I 2 s chlSab2.chr4 1948312 102 - 91010382 actgatttatttttaacttcagttctttcatttttaatttccaattactctttcttgttctctgt-t--------------------------------tgcttcttatctctctctgagaaaattaatagttgc i chlSab2.chr4 C 0 I 2 s manLeu1.NW_012103732v1 2067761 102 + 5179401 actgatttatttttaacttcagttctttcatttttaatttccaattactctttcttgttctctga-t--------------------------------tgcttcttatctctctctgagaaaattaatagttgc i manLeu1.NW_012103732v1 C 0 I 2 s colAng1.NW_012115488v1 7769765 102 - 21726897 actgatttatttttaacttcagttctttcatttttaatttccagttactctttcttgttctctga-t--------------------------------tgtttcttatctctctctgagaaaatcaatagttgc i colAng1.NW_012115488v1 C 0 I 2 s calJac3.chr2 112586539 98 + 204313951 actgatttatttttaatttcagttctttcagttttaatttccaattactctttcttgttctctga-t--------------------------------tgtttctta----tatctgagaaaattaattgttgc i calJac3.chr2 C 0 I 164 s saiBol1.JH378106 45037862 98 + 71252344 actgatttatttttcatttcagttctttcatttttaatttccaattgctctttcttgttctctga-t--------------------------------tgtttctta----tctctgagaaaattaattgttgc i saiBol1.JH378106 C 0 I 5 s cebCap1.NW_016107830v1 398110 98 - 1393929 attgacttatttttaatttcagttctttcatttttaatttccaattactctttcttattctctga-t--------------------------------tgtttctta----tctctgagaaaattaattgttgt i cebCap1.NW_016107830v1 C 0 I 5 s aotNan1.NW_018506370v1 1469904 98 - 15889662 actggtttatttttaatttcagttctttcatttttgatttccaattactctttcttgttctctga-t--------------------------------tgtttctta----tctctgagaaaattaattgttgc i aotNan1.NW_018506370v1 C 0 I 5 s micMur3.chr12 84862692 123 + 108143057 attgatttatttttaatttcagtttttaaatttt--ttttccaattactctttcttgtcctttga-ttattccctttttatagtatcctg-----tttttgtttctta----tctctgagaaaattagttgttat i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1361090 127 - 29863360 ATTGATTTAtttttaatttcagttttttaatttt-aatttctaattactctttcttattctttga-ttattctctcttcaca-tctactg-----tttctgtttcttatctctctctgaggaaactagctttcat i otoGar3.GL873536 I 143 C 0 s canFam3.chr3 14355523 131 + 91889043 actgattaatttttaatttcaattcttttatttt---tttccagttgttccttcttattctctga-ttgtttcttttttatagtatcctgtggtttgtttttttcttctctgtctctgaggaaattaaccaaaac i canFam3.chr3 C 0 C 0 a score=4543196.000000 s hg38.chr5_GL383530v1_alt 97255 400 + 101241 ttt-------------tttttttttaagta-ttctccattcccttcatagcctctattaactccagattgctt-tgtgg-ttgtttatttgggtctcttttatgttggtggctttccctaaatgtctgatgattcttgtc--tctgtgctcatacttaagagttaagcactaaaatactgat-------taaattttctgcctacatgtgtgAATATATACTCTGGTAAATTGCTCTAAATGTCAATTATGTGGCCAGGAGGT----AAAGGGAGGAGAA----------AGTAGAATTGAGACTGGATGTAATTGTTAGGATCAGAATGTAGCATGCCTTGCCTACCAAGGTAAGCAGTTTAACCTTTACTTTATAAACACTGAGGAGCTAGATGATGGCTATACTTGAGGTGAGTTATTAGGAGTCTCTCCTTGTAG s panTro5.chr5 20331204 400 + 181907262 ttt-------------tttttttttaagta-ttctccattcccttcatagtctctattaactccagattcctt-tgtgg-ttgtttatttgggtctcttttatgttggtggctttccctaaatgtctgatgattcttgtc--tctgtgctggtacttaagagttaagcactaaaatactgat-------tAAATTTGCTGCCTACATGTGTGAATATATACTCTGGTAAATTGCTCTAAATGTCAATTATGTGGCCAGGAGGT----AAAGGGAGGAGAA----------AGTAGAATTGAGACTGGATGTAATTGTTAGGATCAGAATGTAGCATGCCTTGCCTACCAAGGTAAGCAGTTGAACCTTTACTTTATAAACACTGAGGAGCTAGATGATGGCTATACTTGAGGTGAGTTATTAGGAGTCTCTCCTTGTAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 20343393 398 + 183735486 ttt-------------tttttttttaagta-ttctccattcccttcatagtctctattaactccagattcctt-tgtgg-tcgtttatttgggtctcttttatgttggtggctttccctaaatgtctgatgattcttgtc--tctgtgctcatacttaagagttaagcactaaaatactgat-------tAAATTTGCTGCCTACATGTGTGAATATATACTCTGGTAAATTGCTCTAAATGTCAATTATGTGGCCAGGAGGT----AAAGGGAGGAGAA----------AGTAGAATTGAGACTGGATGTAATTGTTAGGATCAGAATGTAGCATGCCTTGCCTACCAAGGTAAGCAGTTGAACCTTTACTTTATAAACACTGAG--GCTAGATGATGGCTATACTTGAGGTGAGTTATTAGGAGTCTCTCCTTGTAG i panPan2.chr5 I 2 C 0 s gorGor5.CYUI01014999v1 4830040 399 - 13748885 -tt-------------tttttttttaagta-ttctccattcccttcatagtctctattaactccagattcctt-tgtgg-ttgtttatttgggtctcttttatgttggtggctttccctaaatgtctgatgattcttgtc--tctgtgctcatacttaagagttaagcactaaaatactgat-------taaatttgctgcctgcatgtgtgAATATATACTCTGGTAAATTGCTCTAAATGTCAACTATGTGGCCAGGAGGT----AAAGGGAGGAGAA----------AGTAGAATTGAGACTGGATGTAATTGTTAGGATCAGAATGTAGCATGCCTTGCCTACCAAGGTAAGCAGTTTAACCTTTACTTTATAAACACTGAGGAGCTAGATGATGGCTATACTTGAGGTGAGTTATTAGGAGTCTCTCCTTGTAG i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53859370 400 - 163208435 ttg-------------tttttttttaagta-ttctccgttcccttcatagtctctattaactccagattcctt-tgtgg-ttgtttatttgggtctcttttatgttggtggctttccctaaatgtctgatgattcttgtc--tctgtgctcatacttaagagttaagcattaaaatactgat-------taaatttgctgcctgcatgtgtgAATATATACTCTGGTAAATTGCTCTAAaggtcaattaggtggctgggaggt----aaagggaggagaa----------agtggaattgatactggatgtaattgttaggatcagaatgtagcatgccttgcctaccaaggtaagcagtttaacctttactttATAAACACTGAGGAGCTAGATGATGGCTATACTTGAGGTGAGTTATTAGGAGTCTCTCCTTGTAG i nomLeu3.chr2 I 2 C 0 s rheMac8.chr6 87885098 402 - 180051392 ttg----------ttttttttttttaaata-ttct-cgttcccttcatagtctctattaactccagattcctc-tgtgg-ttgtttatttgagtctctttcatgttggtggctttccctaaatgtctgatgattctggtc--tctgagctcatacttaagagttaagcactaaaatactgat-------taaatttgctgcctgcatgtgtgAATTTATACTCTGGTAAGTTGCTCTAAAGGGCAATTATGTGGCCAGGAGGT----AAAAGGAGGAGAA----------AGTAGAATTGAGACTGGATGTAATTGTTAGGATCAGAGTGTAGCATGCCTTGCCTACCAAGGTAAGCAGTTTAACCTTTACTTTATAAACACTGAGGAGCTGGATGATGGCTGTACTTGAGGTGAGTTATTAGGAGTCTCTCCCTGTAG i rheMac8.chr6 I 2 C 0 s macFas5.chr6 87988479 402 - 181584905 ttg----------ttttttttttttaaata-ttct-cgttcccttcatagtctctattaactccagattcctc-tgtgg-ttgtttatttgagtctctttcatgttggtggctttccctaaatgtctgatgattctggtc--tctgagctcatacttaagagttaagcactaaaatactgat-------taaatttgctgcctgcatgtgtgAATTTATACTCTGGTAAATTGCTCTAAAGGGCAATTATGTGGCCAGGAGGT----AAAAGGAGGAGAA----------AGTAGAATTGAGACTGGATGTAAATGTTAGGATCAGAGTGTAGCATGCCTTGCCTACCAAGGTAAGCAGTTTAACCTTTACTTTATAAACACTGAGGAGCTGGATGATGGCTGTACTTGAGGTGAGTTATTAGGAGTCTCTCCCTGTAG i macFas5.chr6 I 2 C 0 s macNem1.NW_012011400v1 1215120 337 - 8785636 ttgttt------tttttttttttttaaata-ttct-cgttcccttcatagtctctattaactccagattcctc-tgtgg-ttgtttatttgagtctctttgatgttggtggctttccctaaatgtctgatgattctggtc--tctgagctcatacttaagagttaagcactaaaatactgat-------taaatttgctgcctgcatgtgtgAATTTATACTCTGGTAAAT-----------------------------------------------------------------------------------TGTTAGGATCAGAGTGTAGCATGCCTTGCCTACCAAGGTAAGCAGTTTAACCTTTACTTTATAAACACTGAGGAGCTGGATGATGGCTGTACTTGAGGTGAGTTATTAGGAGTCTCTCCCTGTAG i macNem1.NW_012011400v1 I 2 C 0 s cerAty1.NW_012002401v1 1678780 392 + 27333823 ttg-----------tttttttaaaaaaata-ttct-cgttcccttcatagtctctattaactccagattcctc-tgtgg-ttgtttatttgagtctctttcatgttggtggctttccctaaatgtctgatgattctggtc--tctgagctcatacttaagagttaagcactaaaatactgat-------taaatttgctgcctgcatgtgtgAATTTATACTCTGGTAAATTGCTCTAAAGGGCAATTATGTGGCCAGGAGGT----AAAAGGAGGAGAA----------AGTAGAATTGAGACTGGATGTAATTGTTAGGATCAGAGTGTAGCATGCCTTGCCTACCAAGGTAAGCAGTTTAACCTTTACTTTATAAACACTGAGGAGCTGGATGATGGCTGTACTTGAGGTGAGTTA---------CATCCCTGTAG i cerAty1.NW_012002401v1 I 2 C 0 s chlSab2.chr4 1948416 400 - 91010382 ttg------------ttttttttaaaaata-ttct-cgttcccttcatagtctctattaactccagattcctc-tgtgg-ttgtttatttgagtctctttcatgttggtggctttccctaaatgtctgatgattctggtc--tctgagctcatacttaagagttaagcactaaaatactgat-------taaatttgctgcctgcatgtgtgAATTTATACTCTGGTAAATTGCTCTAAAGGTCAATTATGTGGCCAGGAGGT----AAAAGGAGGAGAA----------AGTGGAATTGAGACTGGATGTAATTGTTAGGATCAGAGTGTAGCATGCCTTGCCTACCAAGGTAAGCAGTTTAACCTTTACTTTATAAACACTGAGAAGCTGGATGATGGCTGTACTTGAGGTGAGTTATTAGGAGTCTCTCCCTGTAG i chlSab2.chr4 I 2 C 0 s manLeu1.NW_012103732v1 2067865 400 + 5179401 ttg------------ttttttttttaaata-ttct-cgttcccttcatagtctctattaactccagattcctc-tgtgg-ttgtttatttgagtctttttcatgttggtggctttccctaagtgtctgatgattctggtc--tctgagctcatacttaagagttaagcactaaaatactgat-------tAAATTTGCCGCCTGCATGTGTGAATTTATACTCTGGTAAATTGCTCTAAAGGGCAATTATGTGGCCAGGAGGT----AAAAGGAGGAGAA----------AGTAGAATTGAGACTGGATGTAATTGTTAGGATCAGAGTGTAGCATGCCTTGCCTACCAAGGTAAGCAGTTTAACCTTTACTTTATAAACACTGAGGAGCTGGATGATGGCTGTACTTGACGTGAGTTATTAGGAGTCTCTCCCTGTAG i manLeu1.NW_012103732v1 I 2 C 0 s colAng1.NW_012115488v1 7769869 400 - 21726897 ttg------------ttttgtttttaaata-ttct-cgtttccttcatagtctctattaactccagattcctc-tgtgg-ttgtttatttgggtctctttcatgttggtggcttcccctaaatgtctgatgattctggtc--tctgagctcatacttaagagttaagcactaaaatactgat-------tgaatttgctgcctgcatgtgtgAATTTATACTCTGGTAAATTGCTCTAAAGGTCAATTATGTGGCCAGGAGGT----AAAAGGAGGAGAA----------AGTGGAATTGAGACTGGATGTAATTGTTAGGATCAGAGTGTAGCATGCCTTGCCTACCAAGGTAAGCAGTTTCACCTTTACTTTATAAATACTGAGGAGCTGGATGATGGCTGTACTTGAGGTGAGTTATTAGGAGCCTCTCCCTGTAG i colAng1.NW_012115488v1 I 2 C 0 s calJac3.chr2 112586801 395 + 204313951 -------------tgttttctttttaagta-ttctctgttcaattcatagtctctattaacttcagattactt-tgtgg-----ttatttgggtctcttttatgttggtggctttccctaaatgtctgatgattcttgtc--tttgtgttcatacttaagagttaagcactaaaatactgat-------tacacttgctgcctgcatgtgtgAATTTATAGTCTGGTAAATTGCTCTAAAGGTCTATTATGTGGCCAGGAGGTTAAAAAAAAAAGGAAAA----------AGTGGAATTGATACTGGACGTAATTGTTAGGATCAGAGTGTAGCATGCCTTGCCTACCAAGGTAAGCAGTTTAAC-----CTTTATAAATACTGAGGAGCTAGATGATGGTTATAATTGAGGTGGGTTATTAGCAGTCTGTCCCTTTAG i calJac3.chr2 I 164 C 0 s saiBol1.JH378106 45037965 410 + 71252344 -------------tgttttctttttaagta-ttctctgtttcattcatagtctctattaacttcagattactt-tgtgg-----ttatttgggtcacttttatgttggtggctttccctaaatgtctgatgattcttgtc--tttgtgttcatacttaagagttaagcactaaaatgctgat-------tacatttgctgcctgcatgtgtgAATTTATAGTCTGGTAAATTGCCCTAAAGGTCTATTATGTGGCCAGGAGGTTaaaaaaaaaaaaaaaaaaaaGGAGACAGTGGAATTGATACTGGATGTAATTGTTAGGATCAGAGTGTAGCATGCCTTGCCTACCAAGGTAAGCAGTTTAACCTTTACTTTATAAACACTGAGGAGCTAGATGATGGTTATAATTGAGGTGAGTTATTAGCAGTCTGTCCCTTTAG i saiBol1.JH378106 I 5 C 0 s cebCap1.NW_016107830v1 398213 398 - 1393929 -------------tgttttcattttaagta-ttctctgttccattcatagtctctattaacttcagattactt-tgtgg-----ttatttgggtctcctttatgttggtggctttccctaaatgtctgatgattcttgtc--tttgtgttcatacttaagagttaagcactaaaatactgat-------tacatttgctgcctgcatgtgtgAATTTATAGTCTGGTAAATTGCTCTAAAGATCTATTATGTGGCCAGGAGGT--AAAAAAAAAGGAGAA----------AGTGGAATTGATACTGGACATAATTGTTAGGATCAGAGTATAGCATGCCTTGCCTACCAAGGTAAGCAGTTTAACCTTTACTTTATAAACACTGAGGAGCTAGATGATGGTTATAATTTAGGTGAGTTATTACCAGTCTGTCCCTTTAG i cebCap1.NW_016107830v1 I 5 C 0 s aotNan1.NW_018506370v1 1470007 407 - 15889662 -------------tgttttcttcttaagta-ttctctgttccatttatagtctctactaacttcagattactt-tgtgg-----ttatttgggtctcttttatgttggtggttttccctaaatgtctgatgattcttgtc--tttgtgttcatacttaagagttaagcactaaaatactgat-------tacatttgctgcctgcatgtgtgAATTTATAGTCTGGTAAATTGCTCTAAAGGTCTATTATGTGGCCAGGTGGTaaaaaaaaaaaaaaaaa---aGGAGAAAGTAGAATTGATACTAGACGTAATTGTTAGGATCAGAGTGTAGCATGCCTTGCCTACCAAGGTAAGCAGTTTAACCTTTACTTTATAAACACTGAGGAGCTAGATGATGGTTATAATTGAGGTGAGTTATTAGCAGTCTGTCCCTTTGG i aotNan1.NW_018506370v1 I 5 C 0 s micMur3.chr12 84862815 394 + 108143057 ------------tgtcattgttttaaacta-ttctcttttttctgtgtggtctctatttactccaaattccttttgtggttggttcatttggatctctttcatgttggtg--------------gctgatgatctctatc--tctgtgttcttatttaagagttaagcact-aaatactgattATTTAATAGACACTCTGCCATAATGTGTGAGTTTAAAGTCTGGCAAACTGCTCTAAAGGTCAATTATGTGGCCAGGAGGC---AAAGGGGAGGAGAA----------GGTAG-ATTGAGACTGAATGTAGTTGTTAGGATCAGAGTGTAGCATGCCCTGTGTACCAAGGTAAGCAGTTTAACCTT-TCTCTTTAAACACTAAGAATCTAGATGATGGTCATACTTGAGGCAAGTCTCTTGCAATCTCTCCCTTTAG i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1361217 396 - 29863360 ------------tgtcattttcttaaatta-tttactgggttctgtgtggtgtctgttgactcagaattccttgta----tggtttatttgcatctctttcgtgttggtgccttttcctaaatatctgatgatccaagtc--tctctgttcatatgtaagaggtagggact-aaatactgat-------tCGATACTCTGCCTTCACGTGTGAGTTTATAATCTAGTAAGTTGCTCTAAAGTTCAATTATGTGGCCAGGAGGT---AAAGGGGAGGAGAA----------ATTGGAATTGAGACCAGACATAATTGTTAGGATCAGAGTGTTGCACG-CCTGTGTAGCAAGGCCAGCAGTTAAACCTTCCCTCTGTAGACACTGAGAATCCAGATG-TGGCC-CACCTGAGGCAAGTCTTTTACAATCTCTCTCTTTAG i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14355654 397 + 91889043 -----aaaaaaaaaattttttttagaagtagtcctctgttatatgcatggtttctatttactctaaattgcttttgtggtttatttatttgagtctctttcgtgttagtggctttccctaaaggtgtgatgatccctgtctatatgtgttagtatttaagagttaagcactaaaaggctaat-------tagatactctgcctatctgtgtgagtttatagtctgtTAAA-------------CAATAGTGT-CCCAGGAGGC---AAAAGAGGACAGAA----------AGTGGAACTGAGGCAGGACAGGAGTGCTGGGATCAG--TGTAGTGTGTC-TGTGTACCTAGATAAGCAATTTAAGCTTTATTCTATAAACGCTGATAATCTCAATGATGTTCATATGTCAGGTGAGTCTTTTGCAGTTGCTCCttttaa i canFam3.chr3 C 0 I 246 a score=3480540.000000 s hg38.chr5_GL383530v1_alt 97655 290 + 101241 TCCTAGGATGCAAATTTTCTGTCTTTGTTTCATTCTCTCATAA--A-TTTTTTTTCTGGTTATGATTATATTTTACTTGTAGTGACTAAATATT-ATTTATTCCTTCCACTTGCCATATGCATTCCCAATATAATTTAGTTCTTGCAATTTGAATAGAGGAATCAAGTAGTAACTCTAGTCAGTTATTCTCCTGCTGCCTAGGAAATC-ACTGAGTTCTAATAGATTGAAA--TTGCTTGTAGCCTCATGGGCTCTAA---GAGTCAGTCAATAATGTGTATTTTCAAAGTAGATGTTTT s panTro5.chr5 20331604 294 + 181907262 TCCTAGGATGCAAATTTTCTGTCTTTGTTTCATTCTCTCATAA--ATTTTTTTTTCTGGTTATGATTATATTTTACTTGTAGTGACTAAATATT-ATTTATTCCTTCCACTTGCCGTATGCATTCCCAATATAATTTAGTTCTTGCAATTTGAATAGAGGAATCAAGTAGTAACTCTAGTCAGTTATTCTCCTGCTGCCTaggaaatc-actgagttctaatagattgaaa--ttgcttgtagcctcatgggctctaacaggagacagtcaataatgtgtattttcaaagtagatgtttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20343791 293 + 183735486 TCCTAGgatgcaaattttctgtctttgtttcattctctcataa--a-ttttttttctggttatgattatattttacttgtagtgactaaatatt-atttattccttccacttgccgtatgcattcccaatataatttagttcttgcaatttgaatagaggaatcaagtagtaactctagtcagttattctcctgctgcctaggaaatc-actgagttctaatagattgaaa--ttgcttgtagcctcatgggctctaacaggagtcagtcaataatgtgtattttcaaagtagatgtttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4830439 293 - 13748885 TCCTAGgatgcaaattttctgtctttgtttcattctctcataa--a-ttttttttctggttatgattatattttacttgtagtgactaaatatt-atttattccttccgcttgccgtatgcattcccaatataatttagttcttgcaatttgaatagaggaatcaaatagtaactctagtcagttattctcctgctgcctaggaaatc-actgagttctaatagattgaaa--ttgcttgtagcctcatgggctctaacatgagtcagtaaataatgtgtattttcaaagtagatgtttt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53859770 290 - 163208435 TCCTAGGATGCAAATTTTCTATCTTTGTTTCATTCTCTCATAA--A--TTTTTTTCTGGTTATGATTATATTTTACTTGTAGTGACTAAATATT-ATTTATTCCTTCCACTTGCCATATGCATTCCCAATATAATTTAGTTCTTGCAATTTAAATAGAGGCATCAAGGAGTAACTCTACTCAGTTATT---CTGCTGCCTAGGGAATCAACTGAGTTCTAATAGATTGAAA--TTGCTTGTAGCCTCATTGGCTCTAACATGAGTCAGTCAATAATGTGTATTTTCAAAGTAGATGTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87885500 291 - 180051392 TCCTGGgatgcaaattttctatctttgtttcattctctcataa----ttttttttctgattatg-ttatattttacttgtagtgactaaatatt-gtttattccttccacttgccatatgcattcccagtataatttagttcttgcaatttgaatagaggcatgaagtagtaactctagtcagatattctgctggtgtctagggaatc-actgaattctaatagattgaaa--ttgcttgtagcctcattggctctaacatgagtcagtcaataatgtgtattttcaaagcatatgtttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87988881 291 - 181584905 TCCTGGGATGCAAATTTTCTATCTTTGTTTCATTCTCTCATAA----TTTTTTTTCTGATTATG-TTATATTTTACTTGTAGTGACTAAATATT-GTTTATTCCTTCCACTTGCCGTATGCATTCCCAGTATAATTTAGTTCTTGCAATTTGAATAGAGGCATGAAGTAGTAACTCTAGTCAGATATTCTGCTGGTGTCTAGGGAATC-ACTGAATTCTAATAGATTGAAA--TTGCTTGTAGCCTCATTGGCTCTAACATGAGTCAGTCAATAATGTGTATTTTCAAAGCATATGTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1215457 291 - 8785636 TCCTGGGATGCAAATTTTCTATCTTTGTTTCATTCTCTCATAA----TTTTTTTTCTGATTATG-TTATATTTTACTTGTAGTGACTAAATATT-GTTTATTCCTTCCACTTGCCGTATGCATTCCCAGTATAATTTAGTTCTTGCAATTTGAATAGAGGCATGAAGTAGTAACTCTAGTCAGATATTCTGCTGGTGTCTagggaatc-actgaattctaatagattgaaa--ttgcttgtagcctcattggctctaacatgagtcagtcaataatgtgtattttcaaagcatatgtttt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1679172 291 + 27333823 TCCTGGGATGCAAATTTTCTATCTTTGTTTCATTCTCTCATAA----TTTTTTTTCTGATTATG-TTATATTTTACTTGTAGTGACTAAATATT-GTTTATTCCTTCCACTTGCCGTATGCATTCCCAGTATAATTTAGTTCTTGCAATTTGAATAGAGGCATGAAGTAGTAACTCTAGTCAGATATTCTGCTGGTGTCTagggaatc-actgaattctaatagattgaaa--ttgcttgtagcctcattggctctaacatgagtcagtcaataatgtgtattttcaaagcatatgtttt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1948816 292 - 91010382 TCCTGGGATTCAAATTTTCTATCTTTGTTTCATTCTCTCATAA----TTTTTTTTCTGATTATGATTATATTTTACTTGTAGTGACTAAATATT-GTTTATTCCTTCCACTTGCCATATGCATTCCCAGTATAATTTAGTTCTTGCCATTTGAATAGAGGCATGTAGTAGTAACTCTAGTCAGATATTCTGCTGCTGTCTAGGGAATC-ACTGAATTCTAATAGATTGAAA--TTGCTTGTAGCCTCATTGGCTCTAACATGAGTCAGTCAATAATGTGTATTTTCAAAGCATATGTTTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2068265 291 + 5179401 TCCTGGGATGCAAATTTTCTATCTTTGTTTCATTCTCTCATAA----TTTTTTTTCTGATTATG-TTATATTTTACCTGTAGTGACTAAATATT-GTTTATTCCTTCCACTTGCCGTATGCATTCCCAGTATAATTTAGTTCTTGCAATTTGAATAGAGGCACGAAGTAGTAACTCTAGTCAGATATTCTGCTGGTGTCTagggaatc-actgaattctaatagattgaaa--ttgcttgtagcctcattggctctaacatgagtcagtcaataatgtgtattttcaaagcatatgtttt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7770269 292 - 21726897 TCCTAGGATGCAAATTTTCTATCTTTGTTTCATTCTCGCATAA----TTTTTTTTCTGATTATGATTATATTTTACTTGTAGTGACTAAATATT-GTTTATTCCTTCCAGTTGCCATATGCATGCCCAATATAATTTAGTTCTTGCAATTTGAGTAGAGGCATGAAGTAGTAACTCTAGTCAGATATTCTCCTGCTGCCTagggaatc-actgaattctaatagattgaaa--ttgcttgtagcctcattggttctaacatgagtcagtcaataatgtgtattttcaaagcatatgtttt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112587196 293 + 204313951 TCCTAGGATGCAAATTTCCTGTCTTTGTTTCATTCTCTCATAA--A-TATTTTTTCTGGGTATGATTATATTTTATTTGTAGTGACTAAGCATT-ATTTATTTCCTCCACTTGCCATATGCAGTCCCGAAATAATTTAGTTCATGCAATCTCAATACAGGCATCAAGTAGTAATTCTAGCCAGTTGTTCTCCTGCTGCCTAGGGAATC-ACTAAGTTCTAATAGACTGAAA--TCACTTGTAGCCTCATTGGCTTTAACATGAGTCAGTCAATAATATGTATTTTCAAAGTAGATGTTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45038375 293 + 71252344 TCCTAGGATGCAAATATCCTGTCTTTGTTTCATTCTTGCATAA--A-TATTTTTTCCAGGTATGATTATATTTTATTTGTAGTGACTAAGCATT-ATTTATTTCCTCCACTTGCCATATGCATTCCTGACATAATTTAGTTCTTGCAATCTGAATAGAGGCATCAAGTAGTAATTCTAGCCAGTTATTCTCCTGCTGCCTAGGGAATC-ACTGAATTCTAATAGACTGAAA--TTGCTTGTAGCCTCATTGGCTTTAACATGAGTCAGTCAACAATACGCATTTTCAAAGTAGATGTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 398611 293 - 1393929 TCCTAGGATGCAAATTTCCTGTCTTTGTTTCATTCTCTCATAA--A-TATTTTTTCTGGGTATTATTATATTTTATTTGTGGTGACTAAGAATT-ATTTATTTTCTCCACTTGCCATATACATTCCTGACATAGTTTAGTTCGTGCAATCTGAATAGAGGCATCAAGTAGTAATTCTAGCCAGTTATTCTCCTGCTGCCTagggaatc-actgagttctaacagactgaaa--ttgcttgtagcctcattggctttaacatgagtcagtcaacaatgtgtattttcaaagtgaatgtctt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1470414 293 - 15889662 TCCTAGGATGCAAATTTCCTGTTTTTGTTTCATTCTCTCATAA--A-TATTTTTTCTGGGTATGATTATATTTTATTTGTAGTGACTAAGCATT-ATTTATTTCCTCCACTTGCCATATGCATTCCTGCCATAATTTAGTTCATGCAATCTGAATAGAGGCATCGAATAGTAATTCTAGCCAGTTATTCTCCTGCTGCCTagggaatc-actgagttctaatagactgaaa--ttgcttgtagcctcattggctttaacatgagtcagtcaataatatgtattttcaaagtagatgtttt i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84863209 292 + 108143057 TCCTAGAGTGCAAATTTCCCATCTTTCTTTTATTCTCTCATAAATA-TTTTTTTCCTGGCTCTGATTATATTATACTCCTAGTGACTAAGCA----TCTATTGCTTCCACTTATTGTATCTGTTGCTAATATAATTTAGTTCCTACATTCTGAATAGAGGTATCAAGTGATAACTCTAGCCAGTTATTCTCTTGTTGTCcagggaatc-attgtgttctaatcgattgaaa--tcacttgtggcctcattggctccaatatgagtcagttaataatgtatattttcagggtagatgtttt i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1361613 289 - 29863360 TCTTAGGGCACACATTTTCTGTCTTTGTTTTTTTCTCTCATGA--G-TTCTTTTCCTGGCTTTG---ATATTTTGCTTTTAGTGACTGAACA----CCTTTTGTTTCCACTTGCCATTTCTGTTGCTGATCTAATTTAGTTTCTGTATTCTGAACAGAGGCATCAGGTACTAACTCCAGCCAGTTACTCTCTCGCTGCCCAGGGGATC-ACTGTGTTCCATTTGATTGACATCTCACCTGTGGCTTCACTGGCTCCAACACAAGTCAGTTAATAAGGTATATTTTCAGGATAGAtttttt i otoGar3.GL873536 C 0 I 275 s canFam3.chr3 14356297 286 + 91889043 TCTTTAGATGCAAATTTCCTGCCTTAGTTCCATTGTCTCATAA--ACATTTCTCCCTAGCTAGGATAATCGTTTAATATTAGTGACTAAATATGAATCTATTGCTTTAAATTGCTTTATCTATTGT-------AATTAGTTCTTGC-TTTTGAGTACA-ATACCAAATTATCACTCTACCCAGTTATACTGTTGCTGTCTAGGAAAGA-TCTGAGTTCTAATTCACTGAAA--TCAATTACAGCCTCATTGGCCCCAGTGTTAGTCACTTAATGGTGAGTATTTTCTGGGTACGTGTTTC i canFam3.chr3 I 246 C 0 a score=328816.000000 s hg38.chr5_GL383530v1_alt 97945 29 + 101241 AGTAACTACT----------------------------------------------CTTTTGGT-----AAAGTAACATT s panTro5.chr5 20331898 29 + 181907262 agtaactact----------------------------------------------cttttggt-----aaagtaacatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20344084 29 + 183735486 agtaactact----------------------------------------------cttttggt-----aaggtaacact i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4830732 29 - 13748885 agtaactact----------------------------------------------cttttggt-----aaagtaacatt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53860060 29 - 163208435 AGTAACTACT----------------------------------------------CTTTTGGT-----AAAGTAACACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87885791 29 - 180051392 agtaactact----------------------------------------------cttttggt-----aaagtaacatt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87989172 29 - 181584905 AGTAACTACT----------------------------------------------CTTTTGGT-----AAAGTAACATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1215748 29 - 8785636 agtaactact----------------------------------------------cttttggt-----aaagtaacatt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1679463 29 + 27333823 agtaactact----------------------------------------------cttttggt-----aaagtaacatt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1949108 29 - 91010382 AGTAACTACT----------------------------------------------CTTTTGGT-----AAAGTAACATT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2068556 29 + 5179401 agtaactact----------------------------------------------cttttggt-----aaagtcacatt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7770561 29 - 21726897 agtaactact----------------------------------------------cttttggt-----aaagtaacatt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112587489 29 + 204313951 AGTAACTACT----------------------------------------------CTTTTGGT-----AAAGTAACACT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45038668 29 + 71252344 AGTAACTACT----------------------------------------------CTTTTGGT-----AAAGTAACACC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 398904 29 - 1393929 agtaactact----------------------------------------------cttttggt-----aaagtaacact i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1470707 29 - 15889662 agtaactact----------------------------------------------cttttggt-----aaagtaacact i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84863501 29 + 108143057 agtaactatt----------------------------------------------cttTTGAA-----AAAGTAGCTTT i micMur3.chr12 C 0 C 0 s canFam3.chr3 14356583 80 + 91889043 AGTAACTAATTAAAAAAAGATAGCATTATCAGTCTTTGTTCCATGGTACATAATAACTTTTATTTGTTCAAAGTAcaatt i canFam3.chr3 C 0 C 0 e otoGar3.GL873536 1361902 275 - 29863360 I a score=45909.000000 s hg38.chr5_GL383530v1_alt 97974 3 + 101241 GTG s panTro5.chr5 20331927 3 + 181907262 gtg i panTro5.chr5 C 0 C 0 s panPan2.chr5 20344113 3 + 183735486 gtg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4830761 3 - 13748885 gtg i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53860089 3 - 163208435 GTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87885820 3 - 180051392 gtg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87989201 3 - 181584905 GTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1215777 3 - 8785636 gtg i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1679492 3 + 27333823 gtg i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1949137 3 - 91010382 GTG i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2068585 3 + 5179401 gtg i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7770590 3 - 21726897 gtg i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112587518 3 + 204313951 GTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45038697 3 + 71252344 GTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 398933 3 - 1393929 gtg i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1470736 3 - 15889662 gtg i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84863530 3 + 108143057 GTG i micMur3.chr12 C 0 C 0 s otoGar3.GL873536 1362177 3 - 29863360 GTG i otoGar3.GL873536 I 275 C 0 s canFam3.chr3 14356663 3 + 91889043 gag i canFam3.chr3 C 0 I 109 a score=86436.000000 s hg38.chr5_GL383530v1_alt 97977 6 + 101241 AGTCTT s panTro5.chr5 20331930 6 + 181907262 actctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 20344116 6 + 183735486 actctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4830764 6 - 13748885 agtctt i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53860092 6 - 163208435 AGTCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87885823 6 - 180051392 agtctt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87989204 6 - 181584905 AGTCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1215780 6 - 8785636 agtctt i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1679495 6 + 27333823 agtctt i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1949140 6 - 91010382 AGTCTT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2068588 6 + 5179401 agtctt i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7770593 6 - 21726897 agtctt i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112587521 6 + 204313951 AGTCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45038700 6 + 71252344 AGTCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 398936 6 - 1393929 agtctt i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1470739 6 - 15889662 agtctt i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84863533 6 + 108143057 AGTCTT i micMur3.chr12 C 0 I 1 s otoGar3.GL873536 1362180 6 - 29863360 AGTTTT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14356775 6 + 91889043 agtctt i canFam3.chr3 I 109 I 2 a score=72010.000000 s hg38.chr5_GL383530v1_alt 97983 7 + 101241 CGATCTC s panTro5.chr5 20331936 7 + 181907262 cgatctc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20344122 7 + 183735486 cgatctc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4830770 7 - 13748885 cgatctc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53860098 7 - 163208435 CGATCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87885829 7 - 180051392 caatctc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87989210 7 - 181584905 CAATCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1215786 7 - 8785636 caatcgc i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1679501 7 + 27333823 caatctc i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1949146 7 - 91010382 CAATCTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2068594 7 + 5179401 caatctc i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7770599 7 - 21726897 caatctc i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112587527 7 + 204313951 CAATCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45038706 7 + 71252344 CAATCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 398942 7 - 1393929 caatctc i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1470745 7 - 15889662 cagtctc i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1362186 7 - 29863360 TGTTTTC i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14356783 7 + 91889043 cgataac i canFam3.chr3 I 2 I 130 e micMur3.chr12 84863539 1 + 108143057 I a score=3042331.000000 s hg38.chr5_GL383530v1_alt 97990 302 + 101241 CATACAAGAAAATAATCTTTAT-----------------------------TTGTTCTAA--------ATAATTCCAAGT-AAATACATGATAGTTTTCA-----------------GTTC-----------------------AACAGACTATACAAAAAAA-CATCAGA--ACAACTTCTTTTCCT-----AAAAAAAAGGCTG---------AAA------TTA--ATATGGTCTATAATCTGTGAAAATTACCATGTGTAAATGAAG-AGGGACTATGTTCCTATTCAATGAATGCATATAC----TTATTGTTAAGCTCT-AGGGTGTTTATTGTGTTCTCTCAGAGCCCTTTGCATTCCTAAGCTCTTGGAGATTTGACCTATGGTAACACTGCCCCTACCA--------------TAA s panTro5.chr5 20331943 302 + 181907262 catacaataaaataatctttat-----------------------------tagttctaa--------ataattccaagt-aaatacatgatagttttca-----------------gttc-----------------------aacagactatacaaaaaaa-catcaaa--acaacttcttttcct-----aaaaaaaaggctg---------aaa------tta--atatggtctataatctgtgaaaattactgtgtgtaaatgaag-agggactatgttcctattcaatgaatgcatatac----ttattgttaagctct-agggtgtttattgtgttctctcagagccctttgcactcctaagctcttggAGATTTGACCTATGGTAATACTGCCCCTACCA--------------TAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 20344129 303 + 183735486 catacaataaaataatctttat-----------------------------ttgttctaa--------ataattccaagt-aaatacatgatagttttca-----------------gttc-----------------------aacagactatacaaaaaaa-catcaaa--acaacttcttttcct----aaaaaaaaaggctg---------aaa------tta--atatggtctataatctgtgaaaattactgtgtgtaaatgaag-agggactatgttcctattcaatgaatgcatatac----ttattgttaagctct-aggatgtttattgtgttctctcagagccctttgcactcctaagctcttggAGATTTGACCTATGGTAATACTGCCCCTACCA--------------TAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4830777 300 - 13748885 catacaataaaataatctttat-----------------------------ttattctaa--------atagttccaagt-aaatacatgatagtgttca-----------------gttc-----------------------aacagactatacaaaaaaa--atcaaa--acaacttattttcct------aaaaaaaggctg---------aaa------tta--atatggtctataatctgtgaaaattactgtgtgtaaatgaag-agggactatgttcctattcaatgaatgcatatac----ttatcgttaaactct-agggtgtttattgtgttctctcagagccctttgcactcctaagctcttggAGATTTGACCTATGGTAATACTGCCCCTACCA--------------TAA i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53860105 307 - 163208435 CATACAACAAAATAGTCTTTAT-----------------------------TTGTTCTGA--------ATAATTCCAACT-AAATACATGACAGTGTTCA-----------------GTTC-----------------------AACAGACTATACAAAAAAAACATCAAA--ACAACTTCTTTTCCTAAAAAAAAAAAAAGGCTG---------AAA------TTA--ATATGGTCTATAATCTGCGAAAATTACCGTGTGT-AATGAAG-AGGGACTATGTTCCTATTCGATGAATGCATATAC----TTATTGTTAAGCTCT-AGGGTGTTTATTGTGTTCTCTCAGAGCCCTTTGCACTCCTAAGCTCTTGGAGATTTGACCTATGGTAATACTTCCCCTACCA--------------TAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87885836 302 - 180051392 catacaacaaaataacttttat-----------------------------ttgttctaa--------ataattccaagt-aaatacatggcagtgttca-----------------gttc-----------------------aacagattatactaaaaa--catcaaaacacaatttcttttcct-----aaaaaaatggcta---------aaa------tta--atatggtctataatctgtgaaaattattgtgtgtaaacgaag-agggactatgttcgtattcaatgaatgcatatac----ttatcgttaagctct-agggtgtttattgtgttctgccagagccctttgcactcctaagctcttggAGATTTG-CCTATGGTAATACTGCCCCTAACA--------------TAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87989217 302 - 181584905 CATACAACAAAATAACCTTTAT-----------------------------TTGTTCTAA--------ATAATTCCAAGT-AAATACATGGCAGTGTTCA-----------------GTTC-----------------------AACAGGTTATACTAAAAA--CATCAAAACACAATTTCTTTTCCT-----AAAAAAATGGCTA---------AAA------TTA--ATATGGTCTATAATCTGTGAAAATTATTGTGTGTAAACGAAG-AGGGACTATGTTCGTATTCAATGAATGCATATAC----TTATCGTTAAGCTCT-AGGGTGTTTATTGTGTTCTCCCAGAGCCCTTTGCACTCCTAAACTCTTGGAGATTTG-CCTATGGTAATACTGCCCCTAACA--------------TAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1215793 303 - 8785636 catacaacaaaataacctttat-----------------------------ttgttctaa--------ataattccaagt-aaatacatggcagtgttca-----------------gttc-----------------------aacagattatactaaaaa--catcaaaacacaatttcttttcct----aaaaaaaatggcta---------aaa------tta--atatggtctataatctgtgaaaattattgtgtgtaaacgaag-agggactatgttcgtattcaatgaatgcatatac----ttatcgttaagctct-agggtgtttattgtgttctcccagagccctttgcactcctaagctcttggAGATTTG-CCTATGGTAATACTGCCCCTAACA--------------TAA i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1679508 302 + 27333823 catacaacaaaataacctttat-----------------------------ttgttctaa--------ataattccaagt-aaatacatggtagtgttca-----------------gttc-----------------------aacagattatactaaaaa--catcaaaacacaatttcttttcct-----aaaaaaatggcta---------aaa------tta--atatggtctataatctgtgaaaattattgtgtgtaaatgaag-agggactatgttcgtattcaatgaatgcatatac----ttatcgttaagctct-agggtgtttattgtgttctCCTAGAGCCCTTTGCACTCCTAAGCTCTTGGAGATTTG-CCTATGGTAATACTGCCCCTAACA--------------TAA i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1949153 303 - 91010382 CATACAACAAAATAACCTTTAT-----------------------------TTGTTCTAA--------ATAATTCCAAGT-AAATACATGGCAGTGTTCA-----------------GTTC-----------------------AACAGATTATACAAAAAA--CATCAAAACACAATTTCTTTTCCT-----AAAAAAATGGCTA---------AAA------TTA--ATATGGTCTATAATCTGTGAAAATTATTGTGTGTAAATGAAG-AGGGACTATGTTTGTATTCATTGAATGCATATAC----TTATTGTTAAGCTCT-AGGGTGTTTATTGTGTTCTCCCAGAGCCCTTTGCACTCCTAAGCTCTTGGAGATCTGCCCTATGGTAATACTGCCCCTAACA--------------TAA i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2068601 302 + 5179401 catacaacaaaataacctttat-----------------------------ttgttctaa--------ataattccaagt-aaatacatggcagtgttca-----------------gttc-----------------------aacagattatactaaaaa--catcaaaacacaatttcttttcct-----aaaaaaatggcta---------aaa------tta--atatggtctataatctgtgaaaattattgtgtgtaaatgaag-agggactgtgttcgtattcaatgaatgcatatac----ttatcgttaagctct-agggtgtttattgtgttctcccagagccctttgcactcctaagctcttggAGATTTG-CCTATGGTAATACTGCCCCTAACA--------------TAA i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7770606 303 - 21726897 catacaacaaaataacctttat-----------------------------ttgttctaa--------ataattccaagt-aaatacatggctgtgttca-----------------gttc-----------------------aacagattatacaaaaaa--catcaaaacacaatttcttttcct-----aaaaaaatggcta---------aaa------tta--atatggtctataatctctgaaaattatcatgtgtaaatgaag-agggactatgttcgtattcaatgaatgcatatac----ttattgttaagctct-agggtgtttattgcgttctcccagagccctttgcactcctaagctcttggAGATTTGCCCTATGGTAATACTGCCCCTAACA--------------TAA i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112587534 331 + 204313951 CATATGACAAACTAACCTTTAT-----------------------------TTGTTCTAA--------ATAATTCCAAGT-AAATACATGACAGTGTCTACAAAAGAACCTTTATTTGTTCTAAATAATTCTAAGTAAATACATGACAGATTGCACAAAAAA--C--------ACAATTTCTTTTTCT--------AAAAAGCCTG---------AAA------TTA--ATATGGTCTATAATCTTTGAAAATCACTATGTGTAAATGAAG-AGGGAATATGTTCCTATTGAATGAATGCATATGC----TTCTTG-TAAGCTCT-CGAGTGTTTATTGTGTTCTCTCAGAACCCTTTGCACTCCCGAGTTCTTGGAGATTTGCCCTGTGGTAATATTGCCTCTACCA--------------TAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45038713 331 + 71252344 CATATGACAAAATAACCTTTAT-----------------------------TTTTTCTAA--------ATAATTCCAAGT-AAATACATGACAGTGTCTACAAAAGAACCTTTATTTGTTCTAAATAATTCTAAGTAAATATATGACAGATTATACAAAAAA--C--------ACAATTTCTTTTTCT--------AAAAAGTCTG---------AAA------TTA--ATATGGTCTATAATCTTTGAAAATTGCTATGTGTAAATGAAG-AGGGAATATGTTCCTACTGAATGAATGCATATAC----TTATTG-TGATCTCT-AGAGTGTTTACTGCGTTCTCTCAGAGCCCTTTGCACTTCTGAGTTCTTGGAGATTTGCCCTATGGTAATATTGCCCCTACCA--------------TAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 398949 331 - 1393929 catacaacaaaataacctttat-----------------------------ttgttctaa--------ataattccaagt-aaatacatgacagtgtctaCAAAAGAACCTTTATTTGTTCTAAATAATTCTAAGTAAATACATGACAGATTATACAAAAAA--C--------ACAATTTCTTTTTCT--------AAAAAGTCTG---------AAA------TTA--ATATGGTCTATAATCTTTGAAAATTACTATGTGTAAATGAAG-AGGGAATATGTTTCTGTTGAATGAATGCATATAC----TTATTG-TAAGCTCT-AGAGTGTTTATTGTGCTCTCTCAGAGCCCTTTGCACTCCTGAGTTCTTGGAGGTTTGCCCTATGGTAATATTGCCCCTACCA--------------TAA i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1470752 331 - 15889662 catacgacaaaataacttttat-----------------------------ttgttctaa--------ataattccaagt-aaatacatgacagtgtctaCAAAAGAACCTTTATTTGTTCTAAATAATTCTAAGTAAATACATGACAGATTATACAAAAAA--C--------ACAATTTCTTTTCCT--------AAAAAGTCTG---------AAA------TTA--ATATGGTCTATAATCTTTGAAAATTACTATGTGTAAATGAAG-AGGGAATATGTTCCTATTGAATGAATGCATATAC----TTATTG-TAAGCTCT-AGAGTGTTTATTGTGTTCTCTCAGAGCCCTTTGTGCTCCTGAGTTCTTGGAGATTTGCCCTATGGTAATTTTGCCCCTACCA--------------TAA i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1362193 311 - 29863360 CATAGGATGTAATGACTTTTAT-----------------------------TTGTTTTAA--------GTAATTCCAAGT-AAATAGGTGACAGTGTTCA-----------------TTTC-----------------------AACAGATTATACAAAATA--CTTTAAAACATAATTTCCTTTCCT-----AAAAAAAAGAATGCCatttaaaaaa------att--atatgtataataatttGTGCAAATTACTGGACATGAGTGAAG-AGGGCATGTGTTCCTATTCAGTTAATG-GCATCC----TTACTGCCAGGCTCTGAGGGTGTCCGCCGCAGTCACACAGAGCCCTCGCTACCCAGGTGCTCTTAGAGCTGCGCCCTGTGGT-ATGTCACCCTACCCA--------------TAA i otoGar3.GL873536 C 0 I 3 s canFam3.chr3 14356920 364 + 91889043 catatagaaaaataatccatgtgtaaagagactgtgcagtgtaaccctgtattgttcaagggtcaattATAACTCCAGGCAAAATAACTGATAGTGTTCA-----------------GCTC-----------------------AATAGACCAAACA-------CCTCAAG--ACAGTTTCTTTTCCT---TAAGAAAAATAGCTG---------AAAAATGGTTTAGTATGTGGTATACACCTTGTGTAAATCACTTGGTGTAAACAAAGTAGAAACAAAGTTCCTGTTCAGTGAATATGTATACTTTTTTATTGTGAGGCTCTGAGGCTGATTATTGTGGTCTCTCGGAGCCCTTTGCACCCATGAACTTTTGGAGCTTTGCCCTCTGGTAATACTGCCCCAACCAATGGGGCAATAAGTTAA i canFam3.chr3 I 130 C 0 e micMur3.chr12 84863539 1 + 108143057 I a score=818649.000000 s hg38.chr5_GL383530v1_alt 98292 67 + 101241 GCAATGGGGTAATTGGCTTTAAAGTAAGGAAATGGCACACAACAGAACAAGAGATA----CCATAGTTCTC s panTro5.chr5 20332245 67 + 181907262 GCAATGGGGTAATTGGCTTTAAAGTAAGGAAATGGCACACAACAGAACAAGAGATA----CCATAGTTCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 20344432 67 + 183735486 GCAATGGGGTAATTGGCTTTAAAGTAAGGAAATGGCACACAACAGAACAAGAGATA----CCATAGTTCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4831077 65 - 13748885 GCAATGGGGTAATTGGCTTTAAAGTAAGGAAATGGCACACAACAGAACAAGAG-TA-----CATAGTTCTC i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53860412 67 - 163208435 GCAATGGGGTAATTGGCTTTAAAGTAAGGAAGTGGCACACAGCAGAACAAGAGATA----CCATAGTTCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87886138 67 - 180051392 GCAATGGGGTAATTGGCTTCAAAGTAAGGAAATGGCACACAACAGAACAAGAGATA----CCATAGTTCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87989519 67 - 181584905 GCAATGGGGTAATTGGCTTCAAAGTAAGGAAATGGCACACAACAGAACAAGAGATA----CCATAGTTCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1216096 67 - 8785636 GCAATGGGGTAATTGGCTTCAAAGTAAGGAAATGGCACACAACAGAACAAGAGATA----CCATAGTTCTC i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1679810 67 + 27333823 GCAATGGGGTAATTGGCTTCAAAGTAAGGAAATGGCACACAACAGAACAAGAGATA----CCATAGTTCTC i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1949456 67 - 91010382 GCAGTGGAGTAATTGGCTTTAAAGTAAGGAAATGGCACACAACACAACAAGAGATA----CCATAGTTCTC i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2068903 67 + 5179401 GCAATGGGGTAATTGGCTTCAAAGTAAGGAAATGGCACACAACAGAACAAGAGATA----CCATAGTTCTC i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7770909 67 - 21726897 GCAATGGGGTAATTGGCTTTAAAGTAAGGAAATCGCACACAACAGAACAAGAGATA----CCAAAGTTCTC i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112587865 67 + 204313951 GCAGTGGGGTAATTGGCTTTATAGTAAGGAAATGGCACACAACAGAACAAGAGATA----CCATAGTTCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45039044 67 + 71252344 TCAGTAGGGTAATTGGCTTTATAGTAAGGAAATGGCACACAACAGAACAAGAGATA----CCATAGTTCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 399280 65 - 1393929 GCAGTGGGGTAATTGGCTTTATAGTAAGGAAATAGCACATAAC--AACAAGAGATA----CCATAGTTCTC i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1471083 67 - 15889662 GCAGTGGGGTAATTGGCTTTATAGTAAGGAAATGGCACAAAACAGAACAAGAGATA----CCATAGTTCTT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84863540 67 + 108143057 GCAATGGGGTTGTTGGCTTTAAAGCAAGGAAATGGCACACAACAGCACAAGAGATA----TGATAGTTCTC i micMur3.chr12 I 1 I 129 s otoGar3.GL873536 1362507 65 - 29863360 GCACT----TTGTGGGCTGTAAGGCAAGGACGTGGCACACGACAGCACAAGAGTCGCCCCTGCTTCTTC-- i otoGar3.GL873536 I 3 C 0 s canFam3.chr3 14357284 67 + 91889043 ATGGTGAGGTCCTAGGCCTCAATGCAAGGAGAGAGCACACAGCAGCCCAGAAGGTC----CCATACTTCTC i canFam3.chr3 C 0 C 0 a score=1588698.000000 s hg38.chr5_GL383530v1_alt 98359 157 + 101241 -TCACTCAGATCCttaatttattcaacaaatatgtattgtgcatatattatgaaccagacaccactgataaaaggcaaaATTCACATCTTGGTAGAGCTCTGCAGTGCCTCATGTAGTGCTAGACATCATACAGGCACCAAAAAAAAAAT--AGTTTGAT- s panTro5.chr5 20332312 157 + 181907262 -TCACTCAGATCCttaatttattcaacaaatatgtattgtgcatatattatgaaccagacaccactgataaaaggcaaaATTCACATCTTGGTAGAGCTCTGCAGTGCCTCATGTAGTGCTAGACATCATACAGGCACCAAAAAAAAAAT--AGTTTGAT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 20344499 156 + 183735486 -TCACTCAGATCCttaatttattcaacaaatatgtattgtgcatatattatgaaccagacaccactgataaaaggcaaaATTCACATCTTGGTAGAGCTCTGCAGTGCCTCATGTAGTGCTAGACATCATACAGGCACC-AAAAAAAAAT--AGTTTGAT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4831142 157 - 13748885 -TCACTCAGTTCCttaatttattcaacaaatatgtattgtgcatatattatgaaccagacaccacagataaaaggcaaaATTCACATTTTGGTAGAGCTCTGCAGTGCCTCATGTAGTGCTAGACATCATACAGGCACCAAAAAAAAAAT--AGTTTGAT- i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53860479 155 - 163208435 -TCACTCACTTCCttaatttattcagcaaatatgtattgtgcatatattatgaaccagacacCACTGATAAAAGGCAAAATTCGCATCTTGGTAGATCTCTGCAGTGCCTCATGTAGTGCTAGACATCATACAGGCACC--AAAAAAAAT--AGTTTGAT- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87886205 154 - 180051392 -TCACTCACTTCCttgatttattcagcaaatatgtattgtgcatatattatgaaccagacaccactgataaaaggcaaaATTCACATCTTGGTAGATCTCTGCAGTGCCTCATGTAGTGCTAGACATCATACAGGCACC---AAAAAAAA--AGCTCGAT- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87989586 154 - 181584905 -TCACTCACTTCCttgatttattcagcaaatatgtattgtgcatatattatgaaccagacacCACTGATAAAAGGCAAAATTCACATCTTGGTAGATCTCTGCAGTGCCTCATGTAGTGCTAGACATCATACAGGCACC---AAAAAAAA--AGTTCGAT- i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1216163 154 - 8785636 -TCACTCACTTCCttgatttattcagcaaatatgtattgtgcatatattatgaaccagacaccactgataaaaggcaaaATTCACATCTTGGTAGATCTCTGCAGTGCCTCATGTAGTGCTAGACATCATACAGGCACC---AAAAAAAA--AGTTCGAT- i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1679877 154 + 27333823 -TCACTCACTTCCttgatttattcagcaaatatgtattgtgcatatattatgaaccagacaccactgataaaaggcaaaATTCACATCTTGGTAGATCTCTGCAGTGCCTCATGTAGTGCTAGACATCATACAGGCACC---AAAAAAAA--AGTTCGCT- i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1949523 156 - 91010382 -TCACTCACTTCCttgatttattcagcaaatatgtattgtgcatatattatgaactagacacgattGATAAAAGGCAAAATTCACATCTTGGTAGATCTATGCAGTGCCTCATGTAGTGCTAGACATCATACAGGCACC-AAAAAAAAAA--AGTTCGAT- i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2068970 154 + 5179401 -TCACTCACTTCCttgatttattcagcaaatatgtattgtgcatatattatgaaccagacaccactgataaaaggcaaaATTCACATCTTGGTAGATCTCTGCAGTGCCTCATGTAGTGCTAGACATCATACAGGCACC---AAAAAAAA--AGTTCAAT- i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7770976 156 - 21726897 -TCACTCACTTCCttgattttttcagcaaatatgtattgtgcctatattatgaaccagacacCACTGATAAAAGGCAAAATTCACATCTTGGTAGATCTCTGCAGTGCCTCATGTAGTGCTAGACATCATAGAGGCACC---AAAAAAAAACAGTTCGAT- i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112587932 153 + 204313951 -CTATTCACTTCCttaatttattcagcaaatatgtattttgcatatattatgaaccagacacCACTGATAAAAGGCAAAATTCACATCTCGGTAAATCTCTGCAGTGCCTCATGTAGTGTGAGACATCATACAGGCACC---AAAATAAT---GTTTGTT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45039111 153 + 71252344 -CTATTCACTTCCttaatttattcagcaaatatgtattttgcatatattatgaaccagacacCACTGATAAAAGGCAAAATTCACATCTCGGTAAATCTCTGCAGTGCTTCATGTAGTGCTAGATGTCATACCGGCACC---AAAATAAT---GTTTGTT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 399345 153 - 1393929 -CTATTCACTTCCttaatttattcagcaaatatgtattttgcatatattatgaaccagacacCACTGATAAAAGGCAAAACTCACATCTTGGTAAATCTCTGCAGTGCTTCATGTAGTGCTAGACATCATACAGGCACC---AAAATAAT---GTTTGTT- i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1471150 153 - 15889662 -CTATTCGCTTCCTTAATTTATTCAGCACATATGTATTTTGCATATATTTTGAACCAGACACCACTGATAAAAGGCAAAATTCACATCTTGGTAAATCTCTGCAGTGCTTCATGTAGTGCTAGGCATCATACAGGCACC---AAAATAAT---GTTTGTT- i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1362572 64 - 29863360 -CTACTCAC---------TTATGGGCCACATGTGT---------------------------CACTGACAAAAGGCAAAATTCACAT-------------------------------------CATCTTCCTGGTAA----------------------- i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14357351 154 + 91889043 TTCGTTCACTTCATT-ATTCATTCAGCATATAGGTGTTTTGTGTAGATTATGGATCAGATACCACTAACAAAAGACAAATTTTCCATATTGGTAAATCTCTGCTGTACCTCCTGTAGTGCCAGACATCATACAGGCACC---AGAAAACT---GTTGGCTG i canFam3.chr3 C 0 C 0 e micMur3.chr12 84863607 129 + 108143057 I a score=386955.000000 s hg38.chr5_GL383530v1_alt 98516 29 + 101241 ATGAAGAAAGTAATAATTCATCTATGCCT s panTro5.chr5 20332469 29 + 181907262 ATGAAGAAAGTAATAATTCATCTATGCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20344655 29 + 183735486 ATGAAGAAAGTAATAATTCATCTATGCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4831299 29 - 13748885 ATGAAGAAAGTAATAATTCATCTATGCCT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53860634 29 - 163208435 ATGAAGAAAGTGATCATTCATCTATGCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87886359 29 - 180051392 ATGAAGAAAATGATAATTCATCTATGCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87989740 29 - 181584905 ATGAAGAAAATGATAATTCATCTATGCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1216317 29 - 8785636 ATGAACAAAATGATAATTCATCTATGCCT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1680031 29 + 27333823 ATGAAGAAAATGATAATTCATCTATGCCT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1949679 29 - 91010382 ATGAAGAAAATGATAATTCATCTATGCCT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2069124 29 + 5179401 ATGAAGAAAATGATAATTCATCTATGCCT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7771132 29 - 21726897 ATGAAGAAAATGATAATTCATCTATGCCT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112588085 29 + 204313951 ATGAAGAAAGTGATAATTCATCTATGCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45039264 28 + 71252344 ATAAAGAAAATGATAA-TCATCTATGCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 399498 29 - 1393929 ATGAAGAAAGTCATCATTCATCTATGCCT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1471303 29 - 15889662 ATGAAAAAAGTGATAATTCATCTATACCT i aotNan1.NW_018506370v1 C 0 C 0 s micMur3.chr12 84863736 29 + 108143057 ATGAAGAATGTAATAATTCATCTATGCCT i micMur3.chr12 I 129 N 0 s otoGar3.GL873536 1362636 29 - 29863360 ATGAAGGATGTGATAATTTATCTATGCCT i otoGar3.GL873536 C 0 C 0 s canFam3.chr3 14357505 27 + 91889043 ATGAAGAA--TGGTAATTCACCTATGCCT i canFam3.chr3 C 0 C 0 a score=393603.000000 s hg38.chr5_GL383530v1_alt 98545 32 + 101241 GTGAAGAAGTCCTGGGAGGGCTTTTTAGCACT s panTro5.chr5 20332498 32 + 181907262 GTGAAGAAGTCCTGGGAGGGCTTTTTAGCACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 20344684 32 + 183735486 GTGAAGAAGTCCTGGGAGGGCTTTTTAGCACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4831328 32 - 13748885 GTGAAGAAGTCCTGGGAGGGCTTTTTAGCACT i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53860663 32 - 163208435 GTGAAGAAGTCCTGGGAGGGCTTTTTAGCACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87886388 32 - 180051392 GTAAAGAAGTCCTGGGAGGACTTTTTAGCACT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 87989769 32 - 181584905 GTAAAGAAGTCCTGGGAGGACTTTTTAGCACT i macFas5.chr6 C 0 C 0 s macNem1.NW_012011400v1 1216346 32 - 8785636 GTAAAGAAGTCCTGGGAGGACTTTTTAGCACT i macNem1.NW_012011400v1 C 0 C 0 s cerAty1.NW_012002401v1 1680060 32 + 27333823 GTAAAGAAGTCCTGGGAGGACTTTTTAGCACT i cerAty1.NW_012002401v1 C 0 C 0 s chlSab2.chr4 1949708 32 - 91010382 GTAAAGAAGTCCTGGGAGGACTTTTTAGCACT i chlSab2.chr4 C 0 C 0 s manLeu1.NW_012103732v1 2069153 32 + 5179401 GTAAAGAAGTCCTGGGAAGACTTTTTAGCACT i manLeu1.NW_012103732v1 C 0 C 0 s colAng1.NW_012115488v1 7771161 32 - 21726897 GTAAAGAAGTCCTGGGAGGACTTTTTAGCACT i colAng1.NW_012115488v1 C 0 C 0 s calJac3.chr2 112588114 32 + 204313951 GTGAAAAAGTCCTGGGAGGGCTTTTTAGCACT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 45039292 32 + 71252344 GTAAAAAAGTCCTGGGAGGGCTTTTCAGCACT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107830v1 399527 32 - 1393929 GTGAAAAAGTCCTGGGAGGGCTTTTTAGCACT i cebCap1.NW_016107830v1 C 0 C 0 s aotNan1.NW_018506370v1 1471332 32 - 15889662 GTGAAAAAGTCCTGGGAGGGCTTTTTAGCACT i aotNan1.NW_018506370v1 C 0 C 0 s otoGar3.GL873536 1362665 31 - 29863360 ATGAAAAAGTCCAGGGAGG-TTTTCCAACACT i otoGar3.GL873536 C 0 N 0 s canFam3.chr3 14357532 32 + 91889043 TTGAAGAAGGTCAGGGAGGGCTTTCTAGCACG i canFam3.chr3 C 0 C 0 a score=721674.000000 s hg38.chr5_GL383530v1_alt 98577 71 + 101241 CTAATGGTTAAGCACAGTGGAATTTTTAGCACAGAAATT---ACAGAAAGGAGTCTTAGAAGTAATACGAATTa s panTro5.chr5 20332530 71 + 181907262 CTAATGGTTAAGCACTGTGGAATTTTTAGCACAGAAATT---ACAGAAAGGAGTCTTAAAAGTAATATGAATTa i panTro5.chr5 C 0 C 0 s panPan2.chr5 20344716 71 + 183735486 CTAATGGTTAAGCACTGTGGAATTTTTAGCACAGAAATT---ACAGAAAGGAGTCTTAAAAGTAATATGAATTa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4831360 71 - 13748885 CTAATGGTTAAGCACAGTGGAATTTTTAGCACAGAAATT---ACAGAAAGGAGTCTTAAAAGTAATACGAATTa i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53860695 71 - 163208435 GTAATGCTTAAGCAAAGGGGAATTTTTAGCACAGAAATT---ACAGAAAGGAGTCTTAAAAGTAATACGAATTa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 87886420 71 - 180051392 CTGATGGTTAAGCAGAGTGGAATTCTTAGCACAGAAATT---ACAGAAAGGAATCTTAAAAGTAATACAAATTA i rheMac8.chr6 C 0 N 0 s macFas5.chr6 87989801 71 - 181584905 CTGATGGTTAAGCAGAGTGGAATTCTTAGCACAGAAATT---ACAGAAAGGAATCTTAAAAGTAATACAAATTA i macFas5.chr6 C 0 N 0 s macNem1.NW_012011400v1 1216378 71 - 8785636 CTGATGGTTAAGCAGAGTGGAATTCTTAGCACAGAAATT---ACAGAAAGGAATCTTAAAAGTAATACAAATTA i macNem1.NW_012011400v1 C 0 N 0 s cerAty1.NW_012002401v1 1680092 71 + 27333823 CTGATGGTTAAGCAGAGTGGAATTCTTAGCACAGAAATT---ACAGAAAGGAATCTTAAAAGTAATACAAATTA i cerAty1.NW_012002401v1 C 0 N 0 s chlSab2.chr4 1949740 71 - 91010382 CTGATGGTTAAGCAGAGTGGAATTCTTAGCACAGAAATT---ACAGAAAGGAATCTTAAAAGTAATACCAATTA i chlSab2.chr4 C 0 N 0 s manLeu1.NW_012103732v1 2069185 71 + 5179401 CTGATGGTTAAGCAGAGTGGAATTCTTAGCACAGAAATT---ACAGAAAGGAATCTTAAAAGTAATACAAATTA i manLeu1.NW_012103732v1 C 0 N 0 s colAng1.NW_012115488v1 7771193 71 - 21726897 CTGATGGTTAAGCAGAGTGGAATTCTTAGCACAGAAATT---ACGGAAAGGAATCTTAAAAGTAATACAAATTA i colAng1.NW_012115488v1 C 0 N 0 s calJac3.chr2 112588146 70 + 204313951 CTGATG-TTAAGCAAAGTGGAATTCTTAGCACAGAAATT---ACAGAAAGGAGTCTTAAAAGTAATGTGAATTA i calJac3.chr2 C 0 N 0 s saiBol1.JH378106 45039324 70 + 71252344 CTGATG-TTAAGCAAAGTGGAATTCTTAGCACAGAAATT---ACAGAAAGGAGTCTTAAAAGTAATGTGAATTA i saiBol1.JH378106 C 0 N 0 s cebCap1.NW_016107830v1 399559 70 - 1393929 CTGATG-TTAAGCAAAGTGGAATTCTTAGCACAGAAATT---ACAGAAAGGGGTCTTAAAAGTAATGTGAATTA i cebCap1.NW_016107830v1 C 0 N 0 s aotNan1.NW_018506370v1 1471364 70 - 15889662 CTGATG-TTAAGCAAAGTGGAATTATTAGAACAGAAATT---ACAGAAAGGAGTCTTAAAAGTAATGTGAATTA i aotNan1.NW_018506370v1 C 0 N 0 s canFam3.chr3 14357564 74 + 91889043 CTGGCAGTTCAATAGAAGAAAATCCTCAGTGAAGCTACTAACACAGCAAAGAGTTTTAAAAGTAATGAGAATTA i canFam3.chr3 C 0 N 0 a score=227895.000000 s hg38.chr5_GL383530v1_alt 98648 246 + 101241 atgtccctgtctgacagctttgaagagagtagtggttctcccagcacagagtttgagatctgagaacggacagactgcctcctcaagtgggtccctgacccacaagtagcctaactgggaggcatcccccagtaggggcagactgacacctcacacggccaggtacccctctgagacaaagcttgcagaggaatgatcaggcagcaacatttgctgttcagcaatatgcgctgttctgcagcctcc s panTro5.chr5 20332601 246 + 181907262 atgtccctgtctgacagctttgaagagagtagtggttctcccagcacagagtttgagatctgagaacggacagactgcctcctcaagtgggtccctgacccacaagtagcctaactgggaggcatcccccagtaggggcagactgacacctcacacggccaggtacccctctgagacaaagcttgcagaggaatgatcaggcagcaacatttgctgttcagcaatatgtgctgttctgcagcctcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 20344787 246 + 183735486 atgtccctgtctgacagctttgaagagagtagtggttctcccagcacagagtttgagatctgagaacggacagactgcctcctcaagtgggtccctgacccacaagtagcctaactgggaggcatcccccagtaggggcagactgacacctcacacggccaggtacccctctgagacaaagcttgcagaggaatgatcaggcagcaacatttgctgttcagcaatatgcgctgttctgcagcctcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01014999v1 4831431 246 - 13748885 atgtccctgtctgacagctttgaagagagtagtggttctcccagcacagagtttgagatctgagaacggacagactgcctcctcaagtgggtccctgacccacaagtagcctaactgggaggcatcccccagtaggggcagactgacacctcacacggccaggtacccctctgagacaaagcttgcagaggaatgataaggcagcaacatttgctgttcagcaatattcgctgttctgcagcctcc i gorGor5.CYUI01014999v1 C 0 C 0 s nomLeu3.chr2 53860766 246 - 163208435 atgtccctgtctgacagctttaaagagagtagtggttctcctagcacacagtttgagatctgagaatggacagactgcctcctcaagtgggtccctgatccccaagtagcctaactgggaggcactccccagtaggggcagactgacacctcacatggccaggtacccctctgagacaaagcttgcagaggaatgatcaggcagcaacatttgctgttcagcaatattcgctgttctgcagcctcc i nomLeu3.chr2 C 0 N 0 a score=1284504.000000 s hg38.chr5_GL383530v1_alt 98894 2347 + 101241 actgctgatacgtaggcaaacggtctggagtggacctccagcaaactccaacagacctgcagctgagggtcctgactgttagaaggaaaactaacaaacagaaaggacatccacaccaaaaccccatctgtacctcaccatcatcaaagatcaaaggtagataaaactacaaagatggggaaaaaacagagcagaaaagctgaaatttctaaaaatcaaagcacctctccccctttaaaggaacgcagctcctctccagcaatggaacaagctggatggagaatgactttgacgagttgagagaagaaggcttcagacgattaaactcctccgagctaaaggagtaagttgaaacccatcgcaaagaagctaaaaaccttgaaaaaagatgagatgaatggctaactagattaaccagtgtagagaagtccttaaatgacctgatggagctgaaaaccatggcatgagaactacgcaacgaatgcacaagcttcagtaaccgattcgatcaactggaagaaagggtaccagcgatggaagatcaaataatgaaatgaagcgagaagagaagtttagagaaaaacgagtaaaaagaaatgaacaaagcctccaagaaatatgggactatgcgaaaagaccaaatctacgtctgattggtgtacctgaaagtgacacagagaatggaaccaagttggaaaacactctgcaggatattatccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagaaaacaccacaaagatactccttgagaagggcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagcccgagagaaaggtggggttatccacaaagggaagcccatcagactaacagcggatctctcggcagaaactctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatctcatatccagccacactaagcttcataagtgaaggagaaatataatcctttacagagaagcaaatgctgagtgattttgtcaccaccaggcctgccctacaagagctcctgaaataagcactaaacatggaaaggaac----aactggtaccagccactgcaaaaacatgccaaattgtaaagaccatcgagactaggaagaaactgcatcaactaaagagcagaataaccagctaacgtcataatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatggactaaatgctccaattaaaagacacagactggcaaattggataaagagccaagacccatcagtgtgctgttttcaggagacccatctcatgtgc--agagacacatataggctcaaaataaaggaatggaagaagatctaccaagcaaatagaaaacaaaaaaaggcaggggttgcaatcccagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtccttagagacttacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaacattagacagatcaacgagacagaaagttaaaaggatattcaggaattgaactcagctctgcaccaagcagacctaatagacatctacagaactctccacctgaaatcaacagaatatacattctactaagcaccacattgcactttttccaaaattgaccacatagttggaagtaaagcactcctcagcaaatgtaaaagaacagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactctggatgaagaaactcactgaaaaccactcaactacatggaaactgaacaaccagctcctgaatgactactggctacataacgaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatgtccacaagagaaagcagcaaagatctaaaatagacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaa--------------tgtgcaagaaaagttgtgcaagaaataactaagatcagagcagaactgaaggagatagagacacgaaaaacccttaaaaaaatcaat s panTro5.chr5 20332847 2347 + 181907262 actgctgatatgtaggcaaacggtctggagtggacctccagcaaactccaaaagacctgcagctgagggtcctgactgttagaaggaaaactaacaaacagaaaggacatccacaccaaaaccccatctgtacctcaccatcatcaaagatcaaaggtagataaaaccacaaagatggggaaaaaacagagcagaaaagctgaaaattctaaaaatcaaagcacctctccctcttcaaaggaacgcagctcctctccagcaatggaacaagctggatggagaatgactttgacgagttgagagaagaaggcttcagatgattaaactcctccaagctaaaggagtaagttgaaacccatcgcaaagaagctaaaaaccttgaaaaaagattagatgaatggctaactagattaaccagtgtagagaagtccttaaatgacctgatagagctgaaaaccatggcatgagaactacgtgacgaatgcacaagcttcagtaactgattcgatcaactggaagaaagggtaccagcgatggaagatcaaataatgaaatgaagcgagaagagaagtttagagaaaaaagagtaaaaagaaatgaacaaagcctccaagaaatatgggactatgcgaaaagaccaaatctacgtctgattggtgtacctgaaagtgacacagagaatggaaccaagttggaaaacactctgcaggatattatccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaatacggaaaacaccacaaagatactccttgagaagggcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtggggttatccacaaagggaagcccatcagactaacagcggatctcttggcagaaactctacaagccagaagagagtgggggccaatattcagcattcttaaagaaaagaattttcaacccagaatttcaaatccagccacactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagtgattttgtcaccaccaggcctgccctacaagagcttctgaaataagcactaaacatggaaaggaac----aactggtaccagccactgcaaaaacatgccaaattgtaaagaccatcgagactaggaagaaactgcctcaactaaagagcagaataaccagctaacgtcataatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatggactaaatgctccaattaaaagacacagactggcaaattggataaagagccaagacccatcagtgtgctgttttcaggagacccatctcatgtgc--agagacacatataggctcaaaataaaggaatggaagaagatctaccaagcaaatagaaaacaaaaaaaggcaggggttgcaatcccagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatgtgcacccaatacaggagcacccagattcataaagcaagtcctaagagacttacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaacattagacagatcaatgagacagaaagttgaaaggatattcaggaattgaactcagctctgcaccaagcagacctaatagacatctacagaactctccacccgaaatcaacagaatatacattctactaagcaccacattgcactttttccaaaattgaccacatagttggaagtaaagcactcctcagcaaatgtaaaagaacagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactctggatgaagaaactcactgaaaaccactcaactacatggaaactgaacaaccagctcctgaatgactactgggtacataacgaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatgtccacaagagaaagcagcaaagatctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaa--------------tgtgcaagaaaagttgtgcaagaaataactaagatcagagcataactgaaggagatagagacacgaaaaacccttaaaaaaatcaat i panTro5.chr5 C 0 N 0 s panPan2.chr5 20345033 2350 + 183735486 actgctgatatgtaggcaaacggtctggagtggacctccagcaaactccaaaagacctgcagctgagggtcctgactgttagaaggaaaactaacaaacagaaaggacatccacaccaaaaccccatctgtacctcaccatcatcaaagatcaaaggtagataaaaccacaaagatggggaaaaaacagagcagaaaagctgaaaattctaaaaatcaaagcacctctcccccttcaaaggaacgcagctcctctccagcaatggaacaagctggatggagaatgactttgacgagttgagagaagaaggcttcagacgattaaactcctccgagctaaaggagtaagttgaaacccatcgcaaagaagctaaaaaccttg-aaaaagattagatgaatggctaactagattaaccagtgtagagaagtccttaaatgacctgatagagctgaaaaccatggcatgagaactacgtgacgaatgcacaagcttcagtaactgattcgatcaactggaagaaagggtaccagtgatggaagatcaaataatgaaatgaagcgagaagagaagtttagagaaaaaagagtaaaaagaaatgaacaaagcctccaagaaatatgggactatgcgaaaagaccaaatctacgtctgattggtgtacctgaaagtgacacagagaatggaaccaagttggaaaacactctgcaggatattatccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaatacggaaaacaccacaaagatactccttcagaagggcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttatccacaaagggaagcccatcagactaacagcggatctcttggcagaaactctacaagccagaagagagtgggggccaatattcagcattcttaaagaaaagaattttcaacccagaatttcaaatccagccacactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagtgattttgtcaccacgaggcctgccctacaagagcttctgaaataagcactaaacatggaaaggaacaactaactggtaccagccactgcaaaaacatgccaaattgtaaagaccatcgagactaggaagaaactgcatcaactaaagagcagaataaccagctaacgtcataatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatggactaaatgcttcaattaaaagacacagactggcaaattggataaagagccaagacccatcagtgtgctgttttcaggagacccatctcatgtgc--agagacacatataggctcaaaataaaggaatggaagaagatctaccaagcaaatagaaagcaaaaaaaggcaggggttgcaatcccagtctctgataaaacagactttaaaccaacaaggatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatgtgcacccaatacaggagcacccagattcataaagcaagtcctaagagacttacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaacattagacagatcaatgagacagaaagttgaaaggatattcaggaattgaactcagctctgcaccaagcagacctaatagacatctacagaactctccacccgaaatcaacagaatatacattctactaagcaccacattgcactttttccaaaattgaccacatagttggaagtaaagcactcctcagcaaatgtaaaagaacagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactctggatgaagaaactcactgaaaaccactcaactacatggaaactgaacaaccagctcctgaatgactactggctacataacgaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacacatacaaagcagtgtgtagagggaaatttatagcactaaatgtccacaagagaaagcagcaaagacctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaa--------------tgtgcaagaaaagttgtgcaagaaataactaagatcagagcataactgaaggagatagagacacgaaaaacccttaaaaaaatcaat i panPan2.chr5 C 0 N 0 s gorGor5.CYUI01014999v1 4831677 2361 - 13748885 actgctgatacgtaggcaaacggtctggagtggacctccagcaaactccaacagacctgcagctgagggtcctgactcttagaaggaaaactaacaaacagaaaagacatccacaccaaaaccccatctgtacatcaccatcatcaaagatcaaaggtagataaaaccacaaagatggggaaaaaacagagcagaaaagctgaaaattctaaaaatcaaagcacctctccccgttcaaaggaacgcagctcctctccagcaacggaacaagctggatggagaatgactttgacgagttgagagaagaaggcttcagacgatcaaactcctccaagctaaaggagtaagttgaaacccatcgcaaagaagctaaaaaccttgaaaaaagattagatgaatggctaactagattaaccagtgtagagaagtccttaaatgacctgatggagctgaaaaccatggcatgagaactacgtgacgaatgcacaagcttcagtaac-gattcgatcaactggaagaaagggtaccagtgctggaagatcaaataatgaaatgaagcgagaagagaagtttagagaaaaaagagtaaaaagaaatgaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctgaatggtgtacctgaaagtgacagggagaatggaatcaagttggaaaacactctgcaggatattatccaggagagcttccccaacctatcaaggcaggccaacattcaaattcaggaaatacagaaaacaccacaaagatactccttgagaagggcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtggggttatccacaaagggaagcccatcagactaacagcggatctgtcagcagaaactctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatttcatatccagccacactaagcttcataaatgaaggagaaataaaatcctttacagacaagcaaatgctgagtgattttgtcaccaccaggcctgccctacaagagctcctgaaataagcactaaacatggaaaggagc----tactggtaccagccactgcaaaaacatgccaaattgtaaagaccatcgagactaggaagaaactgcatgaactaaagagcagaataaccagctaacgtcatagtgacaggatcaaattcacacataacaatattaaccttaaaggtaaatggactaaatgctccaattaaaagacacagactggaaaattggataaagagccaagacccatcagtgtgctgttttcaggagacccatctcatgtgcagagagacacatataggctcaaaataaaggaatggaagaagatctaccaagcaaatggaaaacaaaaaaaggcaggtgttgcaatcccagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtccttagagacttacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaacattagacagatcaacgagacagaaagttaaaaggatattcaggaattgaactcagctctgcaccaagcagacctaatagacatctacagaaatctccacccgaaatcaacagaatatacattctactaagcaccgcattgcacttattccaaaattgaccacatagttggaagtaaagcactcctcagcaaatgtaaaagaacagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactctggatgaagaaactcactgaaaaccactcaactacatggaaactgaacaaccagctcctgaatgactactggctacataacgaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaaga-acaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatgtccacaagagaaagtagcaaagatctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaatgtgcaagaaaagttgtgcaagaaaagttgtgcaagaaacaactaagatcagagcagaactgaaggagatagagacacgaaaaacccttaaaaaaatcaat i gorGor5.CYUI01014999v1 C 0 N 0